BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036367
MADYEPHHHHSHHQTLIPKETALQAINTIIQLHFEKTLEKKRAIDLQKKKLHKHFLLFFI
FLGLTFNAQSLSQSTRLQCRHCWIPITLLSLAHLFFYVSVAQTLRCINGFKYQRRCHKLT
LGLATEKLREMKIRLSNGEFGDGFAEDGGAGCGEFEIHYQEPPESYFGKFKRNWALHFGF
LIFIYGFMVSSSVVILCF

High Scoring Gene Products

Symbol, full name Information P value
AT3G18800 protein from Arabidopsis thaliana 2.5e-56

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036367
        (198 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2093989 - symbol:AT3G18800 "AT3G18800" species...   580  2.5e-56   1


>TAIR|locus:2093989 [details] [associations]
            symbol:AT3G18800 "AT3G18800" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
            GO:GO:0005886 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB026654
            EMBL:AY086724 EMBL:BT024770 IPI:IPI00538094 RefSeq:NP_566619.1
            UniGene:At.38492 UniGene:At.67956 PRIDE:Q9LS96
            EnsemblPlants:AT3G18800.1 GeneID:821413 KEGG:ath:AT3G18800
            TAIR:At3g18800 eggNOG:NOG316467 HOGENOM:HOG000241139
            InParanoid:Q9LS96 OMA:EVPYQEP PhylomeDB:Q9LS96
            ProtClustDB:CLSN2688539 Genevestigator:Q9LS96 Uniprot:Q9LS96
        Length = 197

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 122/200 (61%), Positives = 137/200 (68%)

Query:     1 MADYEPHHHHSHHQTLIPKETALQAINTIIQLHFEKTLEKKRAIDLQXXXXXXXXXXXXX 60
             MADY+     ++ Q  IPKETALQA+N+IIQLHFEKTLEKKRAID Q             
Sbjct:     1 MADYDDEIDQNN-QPFIPKETALQALNSIIQLHFEKTLEKKRAIDHQKKKLHKLFQLFFI 59

Query:    61 XXGLTFNAQSLSQ-STRLQCRHCWIPITLLSLAHLFFYVSVAQTLRCINGFKYQRRCHKL 119
                + F   SLSQ S RL CRHCW PI LLS +HLFFYVSVAQTLRCINGFKYQRRCHKL
Sbjct:    60 FLAVIFF--SLSQPSGRLHCRHCWAPICLLSFSHLFFYVSVAQTLRCINGFKYQRRCHKL 117

Query:   120 TLGLATEKLREMKIRLS-NXXXXXXXXXXXXXXXXXXXIHYQEPPESYFGKFKRNWALHF 178
             TLGLAT KLR +K R++                     + YQEPP+SYFGKFKRNWAL+F
Sbjct:   118 TLGLATHKLRFIKSRIAAGDFLGGGDGDEASAAAWDLEVPYQEPPDSYFGKFKRNWALYF 177

Query:   179 GFLIFIYGFMVSSSVVILCF 198
             GFLI +Y FM+S SVVILCF
Sbjct:   178 GFLILLYTFMISFSVVILCF 197


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.139   0.440    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      198       164   0.00088  107 3  11 22  0.40    31
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  157 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  13.15u 0.09s 13.24t   Elapsed:  00:00:01
  Total cpu time:  13.15u 0.09s 13.24t   Elapsed:  00:00:02
  Start:  Sat May 11 12:59:34 2013   End:  Sat May 11 12:59:36 2013

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