Query 036367
Match_columns 198
No_of_seqs 14 out of 16
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 11:58:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3654 Uncharacterized CH dom 56.3 7.8 0.00017 38.7 2.2 32 24-56 91-123 (708)
2 PF09851 SHOCT: Short C-termin 43.1 13 0.00028 22.9 0.9 22 125-156 2-23 (31)
3 PF06612 DUF1146: Protein of u 38.4 32 0.0007 23.4 2.4 34 22-67 7-40 (48)
4 PF12113 SVM_signal: SVM prote 36.4 29 0.00063 22.9 1.8 21 48-68 5-25 (33)
5 PHA03242 envelope glycoprotein 35.9 98 0.0021 29.6 5.9 85 89-174 327-428 (428)
6 PF09125 COX2-transmemb: Cytoc 34.8 74 0.0016 21.7 3.6 26 169-194 11-36 (38)
7 PF11970 Git3_C: G protein-cou 32.2 64 0.0014 23.6 3.2 15 96-110 47-61 (76)
8 PF06898 YqfD: Putative stage 29.1 55 0.0012 29.4 3.0 40 154-193 68-107 (385)
9 PF12273 RCR: Chitin synthesis 27.8 32 0.0007 26.2 1.1 13 52-64 2-14 (130)
10 PRK14444 acylphosphatase; Prov 27.3 34 0.00074 25.2 1.2 41 125-174 52-92 (92)
11 PF11204 DUF2985: Protein of u 26.2 49 0.0011 25.2 1.8 19 178-196 8-26 (81)
12 PF02985 HEAT: HEAT repeat; I 25.6 67 0.0015 18.8 2.0 14 18-31 16-29 (31)
13 PRK14585 pgaD putative PGA bio 25.2 3.4E+02 0.0073 22.7 6.6 55 90-151 50-126 (137)
14 PF14257 DUF4349: Domain of un 25.1 1.4E+02 0.0031 24.8 4.5 32 149-180 191-232 (262)
15 KOG1619 Cytochrome b [Energy p 24.8 4.2E+02 0.0091 24.0 7.6 71 76-193 154-224 (245)
16 cd01324 cbb3_Oxidase_CcoQ Cyto 24.1 1.2E+02 0.0027 20.4 3.3 20 50-69 12-31 (48)
17 PF14130 DUF4297: Domain of un 23.9 29 0.00064 27.8 0.3 10 107-116 10-19 (216)
18 TIGR02052 MerP mercuric transp 22.2 74 0.0016 20.0 1.9 9 77-85 32-40 (92)
19 PF12158 DUF3592: Protein of u 22.0 1.2E+02 0.0026 22.0 3.1 21 154-174 97-119 (148)
20 PF00957 Synaptobrevin: Synapt 21.6 1.9E+02 0.004 20.4 4.0 22 40-61 51-72 (89)
21 COG1598 Predicted nuclease of 21.1 90 0.002 22.0 2.3 29 17-45 31-59 (73)
No 1
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=56.33 E-value=7.8 Score=38.68 Aligned_cols=32 Identities=34% Similarity=0.574 Sum_probs=24.9
Q ss_pred HHHH-HHHhHhhhhhhhhhhhhhHhHHHHHHHHH
Q 036367 24 QAIN-TIIQLHFEKTLEKKRAIDLQKKKLHKHFL 56 (198)
Q Consensus 24 qaL~-tiiQlHFeKTleKKRAiD~QKkeLwklF~ 56 (198)
++|. .++|||- +.=||.|||.+|||++-.+|.
T Consensus 91 ~llasemv~l~m-~leekrraieaqkkkmea~fa 123 (708)
T KOG3654|consen 91 ELLASEMVELSM-RLEEKRRAIEAQKKKMEAIFA 123 (708)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4454 4788885 556899999999999988764
No 2
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=43.07 E-value=13 Score=22.91 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=15.0
Q ss_pred hHHHHHHHhHhcCCCCCCCCCCCCCccCccee
Q 036367 125 TEKLREMKIRLSNGEFGDGFAEDGGAGCGEFE 156 (198)
Q Consensus 125 tekLr~lk~~~s~g~~~d~~~~~~~v~~~e~E 156 (198)
.++|++|+.+... |.++++||+
T Consensus 2 ~~~L~~L~~l~~~----------G~IseeEy~ 23 (31)
T PF09851_consen 2 EDRLEKLKELYDK----------GEISEEEYE 23 (31)
T ss_pred hHHHHHHHHHHHc----------CCCCHHHHH
Confidence 4678888876433 477777765
No 3
>PF06612 DUF1146: Protein of unknown function (DUF1146); InterPro: IPR009526 Members of this protein family are small, typically about 80 residues in length, and are highly hydrophobic. The gene is found so far only in a subset of the firmicutes in association with genes of the ATP synthase F1 complex or NADH-quinone oxidoreductase. This family includes YwzB from Bacillus subtilis.
Probab=38.38 E-value=32 Score=23.39 Aligned_cols=34 Identities=21% Similarity=0.471 Sum_probs=22.8
Q ss_pred HHHHHHHHHhHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhh
Q 036367 22 ALQAINTIIQLHFEKTLEKKRAIDLQKKKLHKHFLLFFIFLGLTFN 67 (198)
Q Consensus 22 A~qaL~tiiQlHFeKTleKKRAiD~QKkeLwklF~~FFiFLal~f~ 67 (198)
|.+||+++ ++||-+.|.|.-.+| ++.+|+|+...
T Consensus 7 a~~aLq~l---~~ekf~k~~~~~q~~---------ll~vllsIalG 40 (48)
T PF06612_consen 7 AFWALQSL---RWEKFFKKPNVRQAR---------LLIVLLSIALG 40 (48)
T ss_pred HHHHHHhc---CHHHHhCCCCchHHH---------HHHHHHHHHHH
Confidence 56677766 999999998765443 45556665443
No 4
>PF12113 SVM_signal: SVM protein signal sequence; InterPro: IPR021970 This domain is presumed to be a signal peptide sequence found in Sequence-variable mosaic (SVM) proteins []. It is found in phytoplasmas. This presumed signal sequence is about 30 amino acids in length.
Probab=36.38 E-value=29 Score=22.89 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 036367 48 KKKLHKHFLLFFIFLGLTFNA 68 (198)
Q Consensus 48 KkeLwklF~~FFiFLal~f~~ 68 (198)
|+++..+-...|+||+++|--
T Consensus 5 knq~~ii~i~Lf~~LGL~fI~ 25 (33)
T PF12113_consen 5 KNQFKIINIFLFIFLGLFFIT 25 (33)
T ss_pred hhchhhhhhHHHHHHHHHhee
Confidence 455666666779999988754
No 5
>PHA03242 envelope glycoprotein M; Provisional
Probab=35.88 E-value=98 Score=29.61 Aligned_cols=85 Identities=14% Similarity=0.357 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhhhhhhccchhhhhhhhhhhhhhh-------HHHHHHHhHhcCCCCCCCCCCCCC------ccCcc-
Q 036367 89 LSLAHLFFYVSVAQTLRCINGFKYQRRCHKLTLGLAT-------EKLREMKIRLSNGEFGDGFAEDGG------AGCGE- 154 (198)
Q Consensus 89 lslaHl~fYvavAqtLRciNgFkYQRrCHKLTLgLAt-------ekLr~lk~~~s~g~~~d~~~~~~~------v~~~e- 154 (198)
..||=+.+-+.++--+||+-.+.|-||=+.-..|-.. +++|+.|..- ++...+..++|+. .+++|
T Consensus 327 ~~Laviail~l~~~vvRlvRa~~yHr~~~t~fy~~v~~~~~~~~~~~~r~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (428)
T PHA03242 327 VALALVALFALAMAVLRLVRAYLYHRRHRSRFYGHVRDARHRARSYIRRVRSSM-RNSREAPYAGESDVGRDDDYASTDG 405 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCcC-CCCccccccccccccccccccccCC
Confidence 3455555556667779999999999998888887653 3444444210 1111111111111 12222
Q ss_pred ---eeecccCCCchhhhhhhhhH
Q 036367 155 ---FEIHYQEPPESYFGKFKRNW 174 (198)
Q Consensus 155 ---~Ev~YQEPpesY~~KFkR~W 174 (198)
+|-.+-|.+|+|+++-.|.|
T Consensus 406 e~iYd~v~~~~~~~~~~~~~~~~ 428 (428)
T PHA03242 406 EPIYDEVAPDEDEVLYARIQHEW 428 (428)
T ss_pred CccccccCCCcchhHHHhhccCC
Confidence 45555588899998877777
No 6
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=34.78 E-value=74 Score=21.71 Aligned_cols=26 Identities=12% Similarity=0.413 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhh
Q 036367 169 KFKRNWALHFGFLIFIYGFMVSSSVV 194 (198)
Q Consensus 169 KFkR~WAlhf~FLi~t~afmVsssV~ 194 (198)
...|.|..+..+.|+.|...++-+++
T Consensus 11 aYEr~Wi~F~l~mi~vFi~li~ytl~ 36 (38)
T PF09125_consen 11 AYERGWIAFALAMILVFIALIGYTLA 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999988888876653
No 7
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=32.18 E-value=64 Score=23.55 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=11.0
Q ss_pred HHHHHhhhhhhhccc
Q 036367 96 FYVSVAQTLRCINGF 110 (198)
Q Consensus 96 fYvavAqtLRciNgF 110 (198)
-+..++.-+.|+|||
T Consensus 47 ~l~~i~~~~~~~~G~ 61 (76)
T PF11970_consen 47 WLFCIAGFMQPSQGF 61 (76)
T ss_pred HHHHHHHHHHHccCH
Confidence 445667778899987
No 8
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=29.10 E-value=55 Score=29.45 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=32.3
Q ss_pred ceeecccCCCchhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 036367 154 EFEIHYQEPPESYFGKFKRNWALHFGFLIFIYGFMVSSSV 193 (198)
Q Consensus 154 e~Ev~YQEPpesY~~KFkR~WAlhf~FLi~t~afmVsssV 193 (198)
.+.|--..-..-++.+++|++.+-+|+++++..+.+.|+.
T Consensus 68 rv~I~~r~GlpF~~~r~~~R~~~~~G~~~f~~~l~~lS~f 107 (385)
T PF06898_consen 68 RVRILKRYGLPFFLKRLRRRKGFVAGIVLFLALLYILSSF 107 (385)
T ss_pred EEEEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCe
Confidence 5666666666678999999999999999988887777654
No 9
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.81 E-value=32 Score=26.20 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 036367 52 HKHFLLFFIFLGL 64 (198)
Q Consensus 52 wklF~~FFiFLal 64 (198)
|-+|++|++++.|
T Consensus 2 W~l~~iii~~i~l 14 (130)
T PF12273_consen 2 WVLFAIIIVAILL 14 (130)
T ss_pred eeeHHHHHHHHHH
Confidence 4445444444333
No 10
>PRK14444 acylphosphatase; Provisional
Probab=27.30 E-value=34 Score=25.19 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=22.9
Q ss_pred hHHHHHHHhHhcCCCCCCCCCCCCCccCcceeecccCCCchhhhhhhhhH
Q 036367 125 TEKLREMKIRLSNGEFGDGFAEDGGAGCGEFEIHYQEPPESYFGKFKRNW 174 (198)
Q Consensus 125 tekLr~lk~~~s~g~~~d~~~~~~~v~~~e~Ev~YQEPpesY~~KFkR~W 174 (198)
.+++.+++..+..|.... -|. ++++...+| +.++..|.--|
T Consensus 52 ~~~i~~f~~~l~~gp~~a------~V~--~i~~~~~~~-~~~~~~F~I~~ 92 (92)
T PRK14444 52 RPAVQKMISWCYSGPSHA------RVE--RVEVHWEEP-TGEERTFTIVW 92 (92)
T ss_pred HHHHHHHHHHHHhCCCCc------EEE--EEEEEEccC-CCCCCCEEEeC
Confidence 567888877775443322 222 455555444 55667776555
No 11
>PF11204 DUF2985: Protein of unknown function (DUF2985); InterPro: IPR021369 This eukaryotic family of proteins has no known function.
Probab=26.18 E-value=49 Score=25.15 Aligned_cols=19 Identities=42% Similarity=0.658 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 036367 178 FGFLIFIYGFMVSSSVVIL 196 (198)
Q Consensus 178 f~FLi~t~afmVsssV~iL 196 (198)
.+|++++|++.|.++-++|
T Consensus 8 ~g~~i~iy~~~V~~~Ga~l 26 (81)
T PF11204_consen 8 MGFAITIYGLNVVAWGAML 26 (81)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5899999999998877665
No 12
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=25.61 E-value=67 Score=18.77 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHh
Q 036367 18 PKETALQAINTIIQ 31 (198)
Q Consensus 18 ~~etA~qaL~tiiQ 31 (198)
=|++|+++|+.|.+
T Consensus 16 VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 16 VRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 58999999999986
No 13
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=25.16 E-value=3.4e+02 Score=22.66 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhhhhhcc-----------chhhhhhhh--h---------hhhhhhHHHHHHHhHhcCCCCCCCCCCC
Q 036367 90 SLAHLFFYVSVAQTLRCING-----------FKYQRRCHK--L---------TLGLATEKLREMKIRLSNGEFGDGFAED 147 (198)
Q Consensus 90 slaHl~fYvavAqtLRciNg-----------FkYQRrCHK--L---------TLgLAtekLr~lk~~~s~g~~~d~~~~~ 147 (198)
++..+.||+.+|= .|| +|||-+=|+ . .+|+..|-+.+|+. ++.....+.++
T Consensus 50 ~l~tl~~Y~~iAv----~nAvvLI~WA~YNq~RF~~~~R~~~~~~~~~eLA~Sf~is~el~~qL~~---~~~lTvh~D~~ 122 (137)
T PRK14585 50 ARSRLQFYFLLAV----ANAVVLIVWALYNKLRFQKQQHHAAYQYTPQEYAESLAIPDELYQQLQK---SHRMSVHFTSQ 122 (137)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccCCCCCCChHHHHHHcCCCHHHHHHHhc---CCeEEEEEcCC
Confidence 8999999998873 455 444432233 2 46777888888875 33334445566
Q ss_pred CCcc
Q 036367 148 GGAG 151 (198)
Q Consensus 148 ~~v~ 151 (198)
|-+.
T Consensus 123 G~i~ 126 (137)
T PRK14585 123 GQIK 126 (137)
T ss_pred CCch
Confidence 6543
No 14
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.06 E-value=1.4e+02 Score=24.81 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=19.5
Q ss_pred CccCcceeecccCC------Cchhhhh----hhhhHHHHHHH
Q 036367 149 GAGCGEFEIHYQEP------PESYFGK----FKRNWALHFGF 180 (198)
Q Consensus 149 ~v~~~e~Ev~YQEP------pesY~~K----FkR~WAlhf~F 180 (198)
-|.-..+.|.+.|| +.+++.+ |+..|-....|
T Consensus 191 ~v~~sti~i~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 232 (262)
T PF14257_consen 191 RVDYSTITISLYEPESIKPESPSFGSRFRDALKNGWNALVSF 232 (262)
T ss_pred hhceEEEEEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 34455677777774 3566656 46667665555
No 15
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=24.82 E-value=4.2e+02 Score=23.95 Aligned_cols=71 Identities=27% Similarity=0.432 Sum_probs=46.9
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhhhhhhhhHHHHHHHhHhcCCCCCCCCCCCCCccCcce
Q 036367 76 RLQCRHCWIPITLLSLAHLFFYVSVAQTLRCINGFKYQRRCHKLTLGLATEKLREMKIRLSNGEFGDGFAEDGGAGCGEF 155 (198)
Q Consensus 76 rLqCRHcWaPi~LlslaHl~fYvavAqtLRciNgFkYQRrCHKLTLgLAtekLr~lk~~~s~g~~~d~~~~~~~v~~~e~ 155 (198)
+..||-=-+|+=. .++=.+|++++++- .+|+ .||+...-. | +++
T Consensus 154 ~~~~Rs~lmP~H~-~~Gl~~f~lai~ta----------------~~Gl-~ek~~f~~~----~-~~s------------- 197 (245)
T KOG1619|consen 154 PESYRSRLMPWHV-FLGLAIFILAIVTA----------------LTGL-LEKLTFLCF----G-DLS------------- 197 (245)
T ss_pred CccHHhhhhhHHH-HHHHHHHHHHHHHH----------------HHHH-HHHHHHhhc----C-ccc-------------
Confidence 4578888899864 45667899999875 3666 454433221 1 222
Q ss_pred eecccCCCchhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 036367 156 EIHYQEPPESYFGKFKRNWALHFGFLIFIYGFMVSSSV 193 (198)
Q Consensus 156 Ev~YQEPpesY~~KFkR~WAlhf~FLi~t~afmVsssV 193 (198)
+-|||+|.+.|- |-+++.|+++|-..|
T Consensus 198 ----~~~~e~~l~n~~-------gv~~il~g~~Vl~~v 224 (245)
T KOG1619|consen 198 ----TKNPEGYLVNFL-------GVFIILFGVLVLTLV 224 (245)
T ss_pred ----ccCHHHHHHHHH-------HHHHHHHHHHheEEE
Confidence 358999999874 666777777775544
No 16
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=24.05 E-value=1.2e+02 Score=20.45 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 036367 50 KLHKHFLLFFIFLGLTFNAQ 69 (198)
Q Consensus 50 eLwklF~~FFiFLal~f~~~ 69 (198)
..|-|+..+.+|+++++-+-
T Consensus 12 ~~~~l~~~~~~Figiv~wa~ 31 (48)
T cd01324 12 DSWGLLYLALFFLGVVVWAF 31 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46778888899999998887
No 17
>PF14130 DUF4297: Domain of unknown function (DUF4297)
Probab=23.86 E-value=29 Score=27.84 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=8.8
Q ss_pred hccchhhhhh
Q 036367 107 INGFKYQRRC 116 (198)
Q Consensus 107 iNgFkYQRrC 116 (198)
.|||+||+++
T Consensus 10 ~~gf~yQ~~~ 19 (216)
T PF14130_consen 10 QRGFRYQDHW 19 (216)
T ss_pred hcccHHHHHH
Confidence 6899999985
No 18
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=22.21 E-value=74 Score=20.00 Aligned_cols=9 Identities=33% Similarity=0.818 Sum_probs=5.2
Q ss_pred cccchhhhH
Q 036367 77 LQCRHCWIP 85 (198)
Q Consensus 77 LqCRHcWaP 85 (198)
..|.+|-..
T Consensus 32 ~~c~~c~~~ 40 (92)
T TIGR02052 32 MTCVACPIT 40 (92)
T ss_pred eEcHHHHHH
Confidence 457766544
No 19
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=21.98 E-value=1.2e+02 Score=21.98 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=15.0
Q ss_pred ceeecc--cCCCchhhhhhhhhH
Q 036367 154 EFEIHY--QEPPESYFGKFKRNW 174 (198)
Q Consensus 154 e~Ev~Y--QEPpesY~~KFkR~W 174 (198)
+++|.| +.|.+++..-.++.|
T Consensus 97 ~V~V~Y~P~~P~~~~l~~~~~~~ 119 (148)
T PF12158_consen 97 TVTVYYNPNNPEEARLEPRKRPW 119 (148)
T ss_pred EEEEEECCcCCCeEEEeeecCch
Confidence 788888 568888887445555
No 20
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=21.62 E-value=1.9e+02 Score=20.39 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=14.4
Q ss_pred hhhhhhHhHHHHHHHHHHHHHH
Q 036367 40 KKRAIDLQKKKLHKHFLLFFIF 61 (198)
Q Consensus 40 KKRAiD~QKkeLwklF~~FFiF 61 (198)
+|+|.++.++..|+-+-...++
T Consensus 51 ~k~a~~l~r~~~~~~~k~~~i~ 72 (89)
T PF00957_consen 51 KKNAKKLKRKMWWRNYKLYIII 72 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 5678888888887765444333
No 21
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=21.08 E-value=90 Score=21.98 Aligned_cols=29 Identities=38% Similarity=0.438 Sum_probs=25.7
Q ss_pred CchHHHHHHHHHHHhHhhhhhhhhhhhhh
Q 036367 17 IPKETALQAINTIIQLHFEKTLEKKRAID 45 (198)
Q Consensus 17 i~~etA~qaL~tiiQlHFeKTleKKRAiD 45 (198)
-+.|.|.+-+...|++|.|-.++.-|.+.
T Consensus 31 ~T~eea~~n~~eai~l~~e~~~~~~~~iP 59 (73)
T COG1598 31 ETLEEALQNAKEAIELHLEALLEEGEPIP 59 (73)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcCC
Confidence 38999999999999999999888877774
Done!