Query 036367
Match_columns 198
No_of_seqs 14 out of 16
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 20:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vmt_A Monofunctional glycosyl 46.3 13 0.00046 31.7 3.1 31 6-44 4-34 (263)
2 1vr8_A GTP binding regulator; 44.5 7.3 0.00025 31.4 1.1 24 5-28 5-28 (142)
3 1jlz_A Tityustoxin alpha-KTX; 37.9 4.5 0.00015 24.5 -0.8 8 79-86 2-9 (26)
4 3vol_A Aerotaxis transducer AE 23.2 26 0.0009 26.4 1.0 27 6-32 4-30 (233)
5 1lgh_B LH II, B800/850, light 21.5 1E+02 0.0036 20.3 3.5 20 45-64 10-30 (45)
6 3n00_A REV-ERBA-alpha; reverba 21.5 1.8E+02 0.0061 22.8 5.6 34 79-114 103-136 (245)
7 1nkz_B Light-harvesting protei 21.3 1.1E+02 0.0037 19.9 3.5 20 45-64 5-25 (41)
8 3bvf_A Ferritin; iron storage, 19.8 71 0.0024 24.1 2.8 26 7-32 5-30 (181)
9 2j73_A Pullulanase; alpha-gluc 19.5 32 0.0011 24.5 0.8 17 152-168 3-19 (103)
10 2eel_A Cell death activator CI 18.2 13 0.00044 27.5 -1.6 31 120-150 22-58 (91)
No 1
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=46.35 E-value=13 Score=31.72 Aligned_cols=31 Identities=35% Similarity=0.697 Sum_probs=0.0
Q ss_pred CCCCCCcCcccCchHHHHHHHHHHHhHhhhhhhhhhhhh
Q 036367 6 PHHHHSHHQTLIPKETALQAINTIIQLHFEKTLEKKRAI 44 (198)
Q Consensus 6 ~~~~h~~~~~~i~~etA~qaL~tiiQlHFeKTleKKRAi 44 (198)
.||||+|...++|+.+=.|-+ -|+..||.-.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--------~~~~kk~~~~ 34 (263)
T 3vmt_A 4 SHHHHHHSSGLVPRGSHMQPV--------GKPPKKKKSK 34 (263)
T ss_dssp ---------------------------------------
T ss_pred cccccccccCcccCCCccccc--------CCchhhhhHH
Confidence 355556666689998877765 4666666654
No 2
>1vr8_A GTP binding regulator; TM1622, structural genomics, joint CE structural genomics, JCSG, protein structure initiative, PS signaling protein; 1.75A {Thermotoga maritima} SCOP: d.312.1.1
Probab=44.49 E-value=7.3 Score=31.45 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=19.4
Q ss_pred CCCCCCCcCcccCchHHHHHHHHH
Q 036367 5 EPHHHHSHHQTLIPKETALQAINT 28 (198)
Q Consensus 5 ~~~~~h~~~~~~i~~etA~qaL~t 28 (198)
.-||||+.+|..-+.++|++.|++
T Consensus 5 ~~~~~~~vpP~sySl~sAi~iL~~ 28 (142)
T 1vr8_A 5 KIHHHHHHPPEAYSLDTAIFVLET 28 (142)
T ss_dssp CCCSSCSSCCTTSCHHHHHHTTCB
T ss_pred ccccccCCCCccccHHHHHHHhcC
Confidence 457777778888899999998865
No 3
>1jlz_A Tityustoxin alpha-KTX; scorpion venom, K+-channel blocker, structure; NMR {Synthetic} SCOP: g.3.7.2
Probab=37.91 E-value=4.5 Score=24.47 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=6.7
Q ss_pred cchhhhHH
Q 036367 79 CRHCWIPI 86 (198)
Q Consensus 79 CRHcWaPi 86 (198)
|+.||.|=
T Consensus 2 c~~C~~~C 9 (26)
T 1jlz_A 2 CGSCRKKC 9 (26)
T ss_dssp CSSHHHHT
T ss_pred chhhhhhh
Confidence 78899886
No 4
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=23.21 E-value=26 Score=26.43 Aligned_cols=27 Identities=30% Similarity=0.674 Sum_probs=9.6
Q ss_pred CCCCCCcCcccCchHHHHHHHHHHHhH
Q 036367 6 PHHHHSHHQTLIPKETALQAINTIIQL 32 (198)
Q Consensus 6 ~~~~h~~~~~~i~~etA~qaL~tiiQl 32 (198)
.||||+|...++|.+.-.+-+.+++.-
T Consensus 4 ~~~~~~~~~~~~~~~~e~~~l~~iLd~ 30 (233)
T 3vol_A 4 SHHHHHHSSGLVPRGSHMARIKSALDN 30 (233)
T ss_dssp --------------CTHHHHHHHHHTT
T ss_pred ccccccccccCCchHHHHHHHHHHHhc
Confidence 355555556688988888888777643
No 5
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=21.53 E-value=1e+02 Score=20.35 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=14.2
Q ss_pred hHhHHHHHHHHHH-HHHHHHH
Q 036367 45 DLQKKKLHKHFLL-FFIFLGL 64 (198)
Q Consensus 45 D~QKkeLwklF~~-FFiFLal 64 (198)
|.|-||+|+.|.- |.+|.++
T Consensus 10 ~~EA~EfH~~~~~~~~~F~~i 30 (45)
T 1lgh_B 10 EEEAIAVHDQFKTTFSAFIIL 30 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999865 4445443
No 6
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=21.52 E-value=1.8e+02 Score=22.85 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=14.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhhhhhccchhhh
Q 036367 79 CRHCWIPITLLSLAHLFFYVSVAQTLRCINGFKYQR 114 (198)
Q Consensus 79 CRHcWaPi~LlslaHl~fYvavAqtLRciNgFkYQR 114 (198)
=++||.++.++.++.. |-.-..++...||..|-+
T Consensus 103 Lk~~~~el~lL~~a~~--~~~~~~~l~~~~g~~~~~ 136 (245)
T 3n00_A 103 LKAGTFEVLMVRFASL--FNVKDQTVMFLSRTTYSL 136 (245)
T ss_dssp HHHHHHHHHHHHHHHT--CCSCC-------------
T ss_pred HHHHHHHHHHHHHHHH--hcCCCCeEEecCCCeecH
Confidence 5899999999987642 222233455678877754
No 7
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=21.32 E-value=1.1e+02 Score=19.87 Aligned_cols=20 Identities=40% Similarity=0.472 Sum_probs=14.1
Q ss_pred hHhHHHHHHHHHHH-HHHHHH
Q 036367 45 DLQKKKLHKHFLLF-FIFLGL 64 (198)
Q Consensus 45 D~QKkeLwklF~~F-FiFLal 64 (198)
|.|-||+|+.|.-- .+|.++
T Consensus 5 ~~EA~EfH~~~~~~~~~F~~i 25 (41)
T 1nkz_B 5 AEQSEELHKYVIDGTRVFLGL 25 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 67889999998654 445443
No 8
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=19.75 E-value=71 Score=24.09 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=13.1
Q ss_pred CCCCCcCcccCchHHHHHHHHHHHhH
Q 036367 7 HHHHSHHQTLIPKETALQAINTIIQL 32 (198)
Q Consensus 7 ~~~h~~~~~~i~~etA~qaL~tiiQl 32 (198)
||||+|.|..--.+.-..+||..|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~LN~~i~~ 30 (181)
T 3bvf_A 5 HHHHHHSQDPMLSKDIIKLLNEQVNK 30 (181)
T ss_dssp ----CCCCCCSSCHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHH
Confidence 33444434334445667788877765
No 9
>2j73_A Pullulanase; alpha-glucan binding, glucosyl- maltotriose, carbohydrate-binding module, hydrolase, glycosidase, beta-sandwich fold; HET: GLC; 1.4A {Thermotoga maritima} SCOP: b.3.1.3 PDB: 2j71_A* 2j72_A*
Probab=19.52 E-value=32 Score=24.46 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.0
Q ss_pred CcceeecccCCCchhhh
Q 036367 152 CGEFEIHYQEPPESYFG 168 (198)
Q Consensus 152 ~~e~Ev~YQEPpesY~~ 168 (198)
+..+.|||+.|...|.+
T Consensus 3 ~~~v~ihY~r~dg~Y~~ 19 (103)
T 2j73_A 3 ETTIVVHYHRYDGKYDG 19 (103)
T ss_dssp CEEEEEEEECTTCCCTT
T ss_pred CceEEEEEECCCCCcCC
Confidence 34799999999999954
No 10
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=18.25 E-value=13 Score=27.53 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=20.4
Q ss_pred hhhhhhHHHHHHHhHh------cCCCCCCCCCCCCCc
Q 036367 120 TLGLATEKLREMKIRL------SNGEFGDGFAEDGGA 150 (198)
Q Consensus 120 TLgLAtekLr~lk~~~------s~g~~~d~~~~~~~v 150 (198)
.-|+++.-|++|+... .++...-...|||..
T Consensus 22 k~GV~A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~ 58 (91)
T 2eel_A 22 RRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTV 58 (91)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCSSSCEEEEETTTCCB
T ss_pred EEeEEcCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcE
Confidence 3589999999999542 222333445688875
Done!