Query 036368
Match_columns 378
No_of_seqs 178 out of 1297
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 20:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hd1_A Squalene synthase HPNC; 100.0 5.1E-68 1.7E-72 513.8 30.1 280 88-375 7-286 (294)
2 3acx_A Dehydrosqualene synthas 100.0 8.3E-65 2.8E-69 491.0 35.3 275 91-375 9-290 (293)
3 3vj8_A Squalene synthase; farn 100.0 3.2E-54 1.1E-58 425.1 20.0 283 89-373 6-303 (343)
4 3rmg_A Octaprenyl-diphosphate 96.5 0.097 3.3E-06 50.7 16.6 139 188-326 141-308 (334)
5 3nf2_A Putative polyprenyl syn 96.4 0.027 9.4E-07 55.0 12.5 138 188-326 151-325 (352)
6 2q80_A Geranylgeranyl pyrophos 96.3 0.11 3.8E-06 49.5 15.5 136 188-326 119-282 (301)
7 1wmw_A Geranylgeranyl diphosph 96.1 0.42 1.4E-05 46.0 18.7 136 188-325 138-311 (330)
8 3apz_A Geranyl diphosphate syn 96.0 0.53 1.8E-05 45.6 19.3 139 188-326 161-324 (348)
9 2e8v_A Geranylgeranyl pyrophos 96.0 0.033 1.1E-06 54.1 10.5 92 188-279 139-246 (340)
10 2her_A Fragment, farnesyl pyro 95.9 0.18 6.1E-06 49.6 15.3 155 188-345 176-355 (368)
11 4f62_A Geranyltranstransferase 95.8 0.04 1.4E-06 53.1 10.1 123 191-325 152-278 (317)
12 2qis_A Farnesyl pyrophosphate 95.7 0.3 1E-05 47.9 16.1 135 189-326 185-356 (374)
13 3ts7_A Geranyltranstransferase 95.7 0.11 3.7E-06 50.3 12.4 115 190-326 158-286 (324)
14 1v4e_A Octoprenyl-diphosphate 95.6 0.21 7.3E-06 47.5 14.3 89 188-278 135-234 (299)
15 3p8r_A Geranyltranstransferase 95.6 0.064 2.2E-06 51.3 10.3 125 191-326 159-286 (302)
16 3lk5_A Geranylgeranyl pyrophos 95.6 0.19 6.5E-06 49.5 14.0 134 190-325 185-353 (380)
17 4dhd_A Polyprenyl synthetase; 95.5 0.091 3.1E-06 51.4 11.3 138 188-326 140-321 (358)
18 1wy0_A Geranylgeranyl pyrophos 95.5 0.23 7.9E-06 48.1 14.1 138 188-326 145-324 (342)
19 3lom_A Geranyltranstransferase 95.4 0.096 3.3E-06 50.3 11.1 114 190-326 158-287 (313)
20 3mzv_A Decaprenyl diphosphate 95.4 0.08 2.7E-06 51.5 10.4 138 188-326 147-315 (341)
21 1uby_A FPS, farnesyl diphospha 95.3 0.37 1.3E-05 47.2 15.2 135 189-326 178-349 (367)
22 3lmd_A Geranylgeranyl pyrophos 95.3 0.11 3.8E-06 50.9 11.3 138 188-326 168-334 (360)
23 3uca_A Geranyltranstransferase 95.2 0.11 3.8E-06 50.1 10.9 115 190-326 180-308 (324)
24 3p8l_A Geranyltranstransferase 95.2 0.2 7E-06 47.8 12.7 123 190-324 156-281 (302)
25 1ps1_A Pentalenene synthase; a 95.2 2.2 7.4E-05 40.4 20.8 198 111-319 52-272 (337)
26 3kb9_A EPI-isozizaene synthase 95.2 1.6 5.4E-05 42.6 19.3 200 111-320 92-315 (382)
27 3pko_A Geranylgeranyl pyrophos 95.1 0.25 8.4E-06 47.8 13.1 137 188-326 151-316 (334)
28 2ihi_A Pyrophosphate synthase; 95.1 1.4 4.6E-05 43.6 18.4 136 189-325 187-377 (395)
29 1rtr_A Geranyltranstransferase 95.0 0.15 5.3E-06 48.6 11.1 124 190-325 148-274 (301)
30 3lsn_A Geranyltranstransferase 94.9 0.096 3.3E-06 50.1 9.3 124 191-326 153-280 (304)
31 3tc1_A Octaprenyl pyrophosphat 94.6 0.22 7.6E-06 47.8 11.1 135 188-325 130-292 (315)
32 3aqb_B Component B of hexapren 94.6 0.45 1.5E-05 45.7 13.2 139 188-326 138-307 (325)
33 3oyr_A Trans-isoprenyl diphosp 94.5 0.48 1.7E-05 46.0 13.2 139 188-326 159-327 (345)
34 1yhl_A Farnesyl pyrophosphate 94.2 0.52 1.8E-05 45.9 12.9 135 189-326 160-342 (362)
35 3pde_A Farnesyl-diphosphate sy 93.8 0.31 1.1E-05 46.7 10.3 125 190-325 155-281 (309)
36 3ipi_A Geranyltranstransferase 93.8 0.45 1.5E-05 45.2 11.2 124 189-326 136-266 (295)
37 2h8o_A Geranyltranstransferase 93.5 0.19 6.5E-06 48.7 8.1 124 190-325 192-318 (335)
38 3dyh_A Farnesyl pyrophosphate 93.4 1.6 5.6E-05 43.0 14.8 136 189-326 188-370 (390)
39 3m0g_A Farnesyl diphosphate sy 93.2 0.059 2E-06 51.4 3.9 113 190-326 147-273 (297)
40 2ftz_A Geranyltranstransferase 92.5 1 3.6E-05 42.4 11.5 121 189-325 143-267 (284)
41 2j1p_A Geranylgeranyl pyrophos 92.4 1.2 4.1E-05 42.1 12.0 113 191-328 161-278 (293)
42 1di1_A Aristolochene synthase; 92.4 6.7 0.00023 36.2 19.1 194 112-320 49-267 (300)
43 1rqj_A Geranyltranstransferase 92.3 0.41 1.4E-05 45.5 8.5 124 190-325 152-279 (299)
44 1n1b_A (+)-bornyl diphosphate 91.9 5.9 0.0002 40.7 17.3 191 120-325 286-506 (549)
45 2azj_A Geranylgeranyl pyrophos 91.5 1.1 3.7E-05 42.4 10.4 112 188-325 143-261 (289)
46 3mav_A Farnesyl pyrophosphate 90.2 15 0.0005 36.0 17.9 136 189-326 187-378 (395)
47 3npk_A Geranyltranstransferase 89.5 2.2 7.5E-05 40.3 10.6 124 189-326 144-270 (291)
48 2ong_A 4S-limonene synthase; m 88.6 22 0.00075 36.3 18.1 183 120-317 280-491 (543)
49 3llw_A Geranyltranstransferase 87.9 3 0.0001 39.8 10.4 121 190-324 159-283 (311)
50 3kra_B Geranyl diphosphate syn 87.2 1.7 5.9E-05 40.7 8.1 69 190-258 149-219 (274)
51 3n0f_A Isoprene synthase; terp 86.3 32 0.0011 35.3 18.7 190 120-325 289-508 (555)
52 3g4d_A (+)-delta-cadinene synt 86.0 23 0.00077 36.4 16.3 180 120-317 291-502 (554)
53 3m00_A Aristolochene synthase; 85.6 35 0.0012 35.0 18.4 192 120-328 287-508 (550)
54 2j5c_A 1,8-cineole synthase; t 85.4 17 0.00057 37.5 15.1 188 122-326 309-526 (569)
55 2q58_A Fragment, farnesyl pyro 84.9 8.1 0.00028 37.5 11.9 138 188-326 176-338 (368)
56 3bny_A Aristolochene synthase; 75.1 52 0.0018 30.4 21.8 191 112-317 63-278 (320)
57 3qkc_B Geranyl diphosphate syn 74.3 4.4 0.00015 37.8 5.8 68 190-257 151-219 (273)
58 3v1v_A 2-MIB synthase, 2-methy 66.6 77 0.0026 31.3 13.3 177 112-288 162-370 (433)
59 3s9v_A Abietadiene synthase, c 64.6 1.5E+02 0.0052 31.6 20.2 190 120-326 522-742 (785)
60 3sdr_A Alpha-bisabolene syntha 62.0 1.7E+02 0.0059 31.3 16.0 182 120-317 550-765 (817)
61 3p5p_A Taxadiene synthase; cla 61.6 1.7E+02 0.0058 31.1 17.8 192 110-317 479-703 (764)
62 1yyq_A Trichodiene synthase; t 44.3 2.2E+02 0.0077 27.3 19.7 160 116-288 80-257 (374)
63 2p0t_A UPF0307 protein pspto_4 41.6 39 0.0013 29.4 5.5 64 149-220 105-170 (176)
64 2l66_A SSO7C4, transcriptional 35.5 15 0.00051 25.2 1.5 23 268-290 10-32 (53)
65 1yfb_A Transition state regula 34.4 10 0.00035 27.0 0.5 23 268-290 20-42 (59)
66 2qzc_A Transcriptional activat 33.9 1.2E+02 0.0039 26.4 7.6 62 276-348 90-151 (214)
67 4fn6_A Thiaminase-2, thiaminas 24.1 2.1E+02 0.0074 25.0 7.6 63 276-349 87-152 (229)
68 4fp4_A Polyprenyl synthetase; 23.5 28 0.00097 32.6 1.6 70 188-264 141-210 (285)
69 3ibx_A TENA, HP1287, putative 23.3 2.2E+02 0.0075 24.8 7.4 62 276-348 91-153 (221)
70 1y29_A Huwentoxin-X; A double- 21.5 42 0.0015 19.9 1.4 17 8-24 5-21 (28)
71 3no6_A Transcriptional activat 21.2 2.4E+02 0.0083 25.2 7.4 64 276-350 106-172 (248)
72 3mvu_A TENA family transcripti 20.4 3.3E+02 0.011 23.7 8.0 63 276-349 93-156 (226)
No 1
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=5.1e-68 Score=513.82 Aligned_cols=280 Identities=26% Similarity=0.397 Sum_probs=247.9
Q ss_pred ChhhHHHHHHHHHHHHHhcCcchHHHHhcCCHHHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHcCCC
Q 036368 88 HPMFLEEAYERCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFYGRP 167 (378)
Q Consensus 88 ~~~~l~~a~~~C~~i~r~~s~sfyla~~llP~~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~g~p 167 (378)
.++.++++|++|.++++++|+|||++++|||++.|+++++||+|||.+|||+|++.. .+..+|+||++.|++++.|.|
T Consensus 7 ~p~~l~~~y~~C~~i~~~~~~sF~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~~--~~~~~L~~~~~~l~~~~~g~~ 84 (294)
T 4hd1_A 7 VPVELRGDFEVCRRLTRSHYENFSVVSLFVPRHLRPHFYSVYAFCRGVDDLGDEFAG--DRMAALDAYEEELRRAFAGEA 84 (294)
T ss_dssp SCGGGHHHHHHHHHHHHHHCTTHHHHTTTCCTTTHHHHHHHHHHHHHHHHTSTTCCS--CHHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHhCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccCCCh--hHHHHHHHHHHHHHHHhcCCC
Confidence 467899999999999999999999999999999999999999999999999998764 345789999999999999999
Q ss_pred CcHHHHHHHHHHHhCCCChHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHHHHH
Q 036368 168 YDMLDAALTDTVFKFPLDIKPFRDMIEGMRMDTRKFRYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGA 247 (378)
Q Consensus 168 ~~pv~~aL~~~v~~~~l~~~~l~~lieg~~~DL~~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~~~A 247 (378)
.||+..+|.+++++|+||.++|.+||+||++|+.+.+|+|++||+.|||+|||+||+|+++++|..+ +...+.|
T Consensus 85 ~~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~~------~~~~~~A 158 (294)
T 4hd1_A 85 TTPAFRALQFTIATCNLPMEPFLRLIEANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCLD------DERARLS 158 (294)
T ss_dssp CSHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCCS------HHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccchHHHHHHHHhCCCC------HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999764 3456889
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCccC
Q 036368 248 LNLGVGNQLTNILRDVGEDASRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKDS 327 (378)
Q Consensus 248 ~~LG~AlQLtNiLRDl~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~~ 327 (378)
.++|+|+||||||||++||+++||||||.|+|++||++++|+..+..+++++.++.+++++|+.||++|+.++..||+++
T Consensus 159 ~~lG~AlQltNilRDv~eD~~~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~ 238 (294)
T 4hd1_A 159 DATCTALQVANHMQDIDRDLALGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRL 238 (294)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHH
T ss_pred HHHHHHHHHHHHHHhchhhhccCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCcccChHHHHHHHHHHHHhh
Q 036368 328 RWPVWSSLLIYREILDAIEENDYDNLTKRAYVGRMKKFLMLPQAYNRA 375 (378)
Q Consensus 328 r~~v~~~~~ly~~iL~~Ie~~~~~vf~~r~~ls~~~kl~~l~~a~~~~ 375 (378)
++++.++..+|+.||++|+++||++|++|+++|+++|+|++|+++.+.
T Consensus 239 r~~~~~~~~~y~~il~~i~~~~~~~~~~R~~vs~~~Kl~l~~~al~~~ 286 (294)
T 4hd1_A 239 ARQLKLYRLGGEAILAAIRRQGYNPFAGRPVVSGKQKLRIALSVLAGG 286 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998765
No 2
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=100.00 E-value=8.3e-65 Score=490.98 Aligned_cols=275 Identities=27% Similarity=0.425 Sum_probs=262.4
Q ss_pred hHHHHHHHHHHHHHhcCcchHHHHhcCCHHHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHcCC----
Q 036368 91 FLEEAYERCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFYGR---- 166 (378)
Q Consensus 91 ~l~~a~~~C~~i~r~~s~sfyla~~llP~~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~g~---- 166 (378)
.+++++++|.++++++|+|||+++++||++.|+++++||+|||++|||+|++..+.. |+||++.|++++.|.
T Consensus 9 ~~~~~~~~c~~~~~~~s~sF~~a~~~Lp~~~R~av~alYaf~R~~Ddi~D~~~~~~~----L~~w~~~l~~~~~g~~~~~ 84 (293)
T 3acx_A 9 MMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQF----LNQIKEDIQSIEKYPYEYH 84 (293)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGGTSSTHH----HHHHHHHHHHHHHCTTSCC
T ss_pred hhHHHHHHHHHHHhccCCcHHHHHHhCCHHHHHHHHHHHHHHHHHhhHhccCCCHHH----HHHHHHHHHHHhCCCCccc
Confidence 488999999999999999999999999999999999999999999999998775532 999999999999887
Q ss_pred ---CCcHHHHHHHHHHHhCCCChHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhH
Q 036368 167 ---PYDMLDAALTDTVFKFPLDIKPFRDMIEGMRMDTRKFRYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSI 243 (378)
Q Consensus 167 ---p~~pv~~aL~~~v~~~~l~~~~l~~lieg~~~DL~~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~ 243 (378)
+.|||..+|.+++++|+++.++|.+||+||++|+.+.+|+|++||+.|||+|||+||+|+++++|..+. +..
T Consensus 85 ~~~~~~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~~-----~~~ 159 (293)
T 3acx_A 85 HFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHET-----HQT 159 (293)
T ss_dssp CCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSCC-----HHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCc-----HHH
Confidence 569999999999999999999999999999999999999999999999999999999999999997542 346
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 036368 244 YNGALNLGVGNQLTNILRDVGEDASRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQL 323 (378)
Q Consensus 244 ~~~A~~LG~AlQLtNiLRDl~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~L 323 (378)
.+.|.+||.|+|+||||||++||+++||+|||.|+|++||++++++..+..++++++++.+++++|+.||.+|+.++..|
T Consensus 160 ~~~A~~lG~AlQltNilRDv~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~l 239 (293)
T 3acx_A 160 YDVARRLGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVF 239 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHTTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCcccChHHHHHHHHHHHHhh
Q 036368 324 DKDSRWPVWSSLLIYREILDAIEENDYDNLTKRAYVGRMKKFLMLPQAYNRA 375 (378)
Q Consensus 324 p~~~r~~v~~~~~ly~~iL~~Ie~~~~~vf~~r~~ls~~~kl~~l~~a~~~~ 375 (378)
|+++++++.++..+|+.||++|+++||+ |++|+++|+++|+|++|+++.+.
T Consensus 240 p~~~r~~~~~~~~~~~~iL~~i~~~~~~-~~~r~~v~~~~k~~~~~~a~~~~ 290 (293)
T 3acx_A 240 SIEAQPIIELAARIYIEILDEVRQANYT-LHERVFVEKRKKAKLFHEINSKY 290 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCceeCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 99999999999999999998864
No 3
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=100.00 E-value=3.2e-54 Score=425.12 Aligned_cols=283 Identities=19% Similarity=0.147 Sum_probs=238.7
Q ss_pred hhhHHHHHHHHHHHHHhcCcchHHHHhcCCHHHHHHHHHHHHHHHHhhhhccCCCCC-cccHHHHHHHHHHHHHH---Hc
Q 036368 89 PMFLEEAYERCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAT-YMGSVVLDRWEERLQDI---FY 164 (378)
Q Consensus 89 ~~~l~~a~~~C~~i~r~~s~sfyla~~llP~~~R~al~aLYAf~R~~DdivD~~~~~-~~~~~~L~~Wr~~L~~i---~~ 164 (378)
++.++++|++|.++++++|+|||+++++||++.|+++++||+|||.+|||+|++..+ .++..+|+||++.|.+. +.
T Consensus 6 ~~~l~~~~~~C~~~l~~~srsF~la~~lLp~~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~ 85 (343)
T 3vj8_A 6 QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFM 85 (343)
T ss_dssp --CCCHHHHHHHHHHHHHHGGGHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCC
T ss_pred cccchHHHHHHHHHHHhcCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhc
Confidence 445789999999999999999999999999999999999999999999999998643 34556899999998753 43
Q ss_pred CC-C-CcHHHHHHHHHHHhC-CCC-------hHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCC
Q 036368 165 GR-P-YDMLDAALTDTVFKF-PLD-------IKPFRDMIEGMRMDTRKFRYEDFQELYLYCYYVAGTVGLMSVPVMGIAP 234 (378)
Q Consensus 165 g~-p-~~pv~~aL~~~v~~~-~l~-------~~~l~~lieg~~~DL~~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~ 234 (378)
|. | .+++...+..++..| .++ ...+.+|++||++|+. .+|+|++||+.|||+|||+||+|+++++|..+
T Consensus 86 ~~~~~~~~ll~~~p~v~~~f~~l~~~~~~~i~~~~~~m~~gm~~dl~-~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~ 164 (343)
T 3vj8_A 86 ESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLD-KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASE 164 (343)
T ss_dssp CCCSTTTHHHHTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHGGG-CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred CCChhhHHHHhcCcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCC
Confidence 43 2 234443333233222 122 3456679999999998 79999999999999999999999999999754
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHH
Q 036368 235 DSSSSAQSIYNGALNLGVGNQLTNILRDVGEDASRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFN 314 (378)
Q Consensus 235 ~~~~~~~~~~~~A~~LG~AlQLtNiLRDl~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~ 314 (378)
......+...+.|.+||.|+|+||||||++||+.+||+|||.|+|++||++++|+..+..+++++.++.+++.+|+.||.
T Consensus 165 ~~~~~~~~~~~~A~~lG~AlQltNilRDv~eD~~~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~ 244 (343)
T 3vj8_A 165 FEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIP 244 (343)
T ss_dssp SSCHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHH
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHhHHHHhCCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 31111124568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCcc-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCcccChHHHHHHHHHHHH
Q 036368 315 MAEEGASQLDKD-SRWPVWSSLLIYREILDAIEENDYDNLTKRAYVGRMKKFLMLPQAYN 373 (378)
Q Consensus 315 ~A~~~~~~Lp~~-~r~~v~~~~~ly~~iL~~Ie~~~~~vf~~r~~ls~~~kl~~l~~a~~ 373 (378)
+|..++..||.. .+.++.++..++..+|++|+++ +++|++++++++++|+|++|++..
T Consensus 245 ~a~~~~~~L~~~~~~~~~~ip~~lA~~tL~~i~~~-~~v~~~rvkisr~~~~~l~~ra~~ 303 (343)
T 3vj8_A 245 DVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNN-QQVFKGAVKIRKGQAVTLMMDATN 303 (343)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTC-GGGGTSCCCCCHHHHHHHHHHCSS
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHhC-CccccCCCcccHHHHHHHHHHhCC
Confidence 999999999876 3446778889999999999775 799999999999999999998754
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=96.47 E-value=0.097 Score=50.69 Aligned_cols=139 Identities=10% Similarity=0.020 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHhhhHHHHHHHhhhCcCCC-CCCchhhHHHHHHHHHHHHHHHHHHHhH-
Q 036368 188 PFRDMIEGMRMDTRKFR--YEDFQELYLYCYYVAGTVGLMSVPVMGIAPD-SSSSAQSIYNGALNLGVGNQLTNILRDV- 263 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~~--~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~-~~~~~~~~~~~A~~LG~AlQLtNiLRDl- 263 (378)
.+.+|+.|...|+.... -.|++++..-.++-.|++..+++.+...-.. +....+.+...+.++|.|+|+.+=+-|+
T Consensus 141 ~~~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 141 LGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45689999999987532 3588888888888888887777665332111 1111345678999999999999888776
Q ss_pred ---------HHHHhcCCCCCCHHhHHhcCCCh--Hhh---h-hccCCHH-HH---H------HHHHHHHHHHHHHHHHHH
Q 036368 264 ---------GEDASRGRVYLPQDELAQFGLCD--KDV---F-ARKVTDN-WR---E------FMKEQIKRARTFFNMAEE 318 (378)
Q Consensus 264 ---------~eD~~~GR~YLP~d~L~~~Gvs~--edl---~-~~~~~~~-~~---~------~~~~l~~~A~~~l~~A~~ 318 (378)
+.|+..|.+-+|.=..-+..-.+ +.+ + .+..++. +. + .+..--..++.+.++|.+
T Consensus 221 ~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~ 300 (334)
T 3rmg_A 221 DSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFD 300 (334)
T ss_dssp CC------CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 48999999999876543332111 111 1 1122221 22 2 234445677889999999
Q ss_pred hhhccCcc
Q 036368 319 GASQLDKD 326 (378)
Q Consensus 319 ~~~~Lp~~ 326 (378)
.+..+|..
T Consensus 301 ~L~~lp~~ 308 (334)
T 3rmg_A 301 LLAALPDS 308 (334)
T ss_dssp HHTTSCCC
T ss_pred HHHhCCCc
Confidence 99988853
No 5
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=96.43 E-value=0.027 Score=55.01 Aligned_cols=138 Identities=14% Similarity=0.139 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCC-CCCchhhHHHHHHHHHHHHHHHHHHHhH-
Q 036368 188 PFRDMIEGMRMDTRKF--RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPD-SSSSAQSIYNGALNLGVGNQLTNILRDV- 263 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~--~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~-~~~~~~~~~~~A~~LG~AlQLtNiLRDl- 263 (378)
.+.+|++|...|+... .-.|++++..-.++-.|++..+.+.+..+-.. +....+.+...+.++|.|+|+.+=+-|+
T Consensus 151 ~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 151 ASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4578999999998632 35688888887888888887777665332111 1111345678999999999999877776
Q ss_pred ----------HHHHhcCCCCCCHHhHHhcCCCh--Hhh---hhc--------cCC-HHHHH---H------HHHHHHHHH
Q 036368 264 ----------GEDASRGRVYLPQDELAQFGLCD--KDV---FAR--------KVT-DNWRE---F------MKEQIKRAR 310 (378)
Q Consensus 264 ----------~eD~~~GR~YLP~d~L~~~Gvs~--edl---~~~--------~~~-~~~~~---~------~~~l~~~A~ 310 (378)
+.|+..|.+-+|.=..-+.+ ++ +.+ +.. ..+ +.+.. + +..-.+.++
T Consensus 231 gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~ 309 (352)
T 3nf2_A 231 GDPDATGKQTWSDLRQRKKSLPVVAALAAG-GAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEAR 309 (352)
T ss_dssp CCHHHHSSCTTHHHHTTCCCHHHHHHHHHC-SHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CChhhhCCCcCcccccCCccHHHHHHHHhC-ChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHH
Confidence 57899999999876544432 22 122 211 112 22222 2 344556788
Q ss_pred HHHHHHHHhhhccCcc
Q 036368 311 TFFNMAEEGASQLDKD 326 (378)
Q Consensus 311 ~~l~~A~~~~~~Lp~~ 326 (378)
.+.++|.+.+..+|..
T Consensus 310 ~~~~~A~~~L~~lp~~ 325 (352)
T 3nf2_A 310 RQHTIAIEALDAVDMP 325 (352)
T ss_dssp HHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 8999999999988863
No 6
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=96.27 E-value=0.11 Score=49.50 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhcCC---CCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhH-
Q 036368 188 PFRDMIEGMRMDTRK---FRYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNILRDV- 263 (378)
Q Consensus 188 ~l~~lieg~~~DL~~---~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl- 263 (378)
.+.+|++|...|+.. ....|++++..-.++-.|++..+.+.+...-.+.. +.+...+.++|.|+|+.+=+-|+
T Consensus 119 ~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~---~~l~~~g~~lG~aFQi~DD~ld~~ 195 (301)
T 2q80_A 119 QLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYK---EDLKPLLNTLGLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC---SCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCCh---HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456899999999853 22568888888888877777777776643322211 34678999999999999877776
Q ss_pred ----------HHHHhcCCCCCCHHhHHhcCCChHhh---h-hccCCHHHHH-H---------HHHHHHHHHHHHHHHHHh
Q 036368 264 ----------GEDASRGRVYLPQDELAQFGLCDKDV---F-ARKVTDNWRE-F---------MKEQIKRARTFFNMAEEG 319 (378)
Q Consensus 264 ----------~eD~~~GR~YLP~d~L~~~Gvs~edl---~-~~~~~~~~~~-~---------~~~l~~~A~~~l~~A~~~ 319 (378)
+.|+..|.+-+|.=..-+.+-....+ + .+..++.... + +...-+.++.+.++|.+.
T Consensus 196 ~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~ 275 (301)
T 2q80_A 196 SKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQ 275 (301)
T ss_dssp CC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 47888999999986544432111112 2 1222333332 1 234456778888888888
Q ss_pred hhccCcc
Q 036368 320 ASQLDKD 326 (378)
Q Consensus 320 ~~~Lp~~ 326 (378)
+..+|..
T Consensus 276 L~~l~~~ 282 (301)
T 2q80_A 276 IDARGGN 282 (301)
T ss_dssp HHHTTCC
T ss_pred HHcCCCC
Confidence 8888753
No 7
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=96.07 E-value=0.42 Score=46.02 Aligned_cols=136 Identities=12% Similarity=0.030 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhcCC---C-CCCCHHHHHHHHHHhhhHH-HHHHHhhhCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 036368 188 PFRDMIEGMRMDTRK---F-RYEDFQELYLYCYYVAGTV-GLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNILRD 262 (378)
Q Consensus 188 ~l~~lieg~~~DL~~---~-~~~t~~dL~~Y~~~vAG~V-G~l~~~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNiLRD 262 (378)
...+|+.|...|+.. . .-.|++++..-+++-.|++ ..+.+.+...-.+...... +.+.+.++|.|+|+.+=+-|
T Consensus 138 ~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~-l~~~g~~lG~aFQi~DD~ld 216 (330)
T 1wmw_A 138 VVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA-YEEGGLRLGTAFQIVDDVLN 216 (330)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHccCc
Confidence 356899999999864 2 3568888888888878888 7776665322111111122 77899999999999988888
Q ss_pred H----------HHHHhcCCCCCCHHhHHhcCCChH--h-h---hhc-cC---CHHHHHH---H------HHHHHHHHHHH
Q 036368 263 V----------GEDASRGRVYLPQDELAQFGLCDK--D-V---FAR-KV---TDNWREF---M------KEQIKRARTFF 313 (378)
Q Consensus 263 l----------~eD~~~GR~YLP~d~L~~~Gvs~e--d-l---~~~-~~---~~~~~~~---~------~~l~~~A~~~l 313 (378)
+ +.|+..|.+-+|.=..-+.. +++ . + +.. .. .+.+..+ + ...-+.++.+.
T Consensus 217 ~~~d~~~GK~~g~Dl~egK~T~p~i~al~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~ 295 (330)
T 1wmw_A 217 LEGGEAYGKERAGDLYEGKRTLILLRFLEEA-PPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQ 295 (330)
T ss_dssp HSCSCCCSSSTTHHHHHTCCCHHHHHHHHHS-CHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred ccCCcccCCCcCchhhCCCCCHHHHHHHHhC-CHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 6 68999999999875433322 211 1 1 111 11 1222222 2 23335677888
Q ss_pred HHHHHhhh----ccCc
Q 036368 314 NMAEEGAS----QLDK 325 (378)
Q Consensus 314 ~~A~~~~~----~Lp~ 325 (378)
++|...+. .+|.
T Consensus 296 ~~A~~~L~~~i~~lp~ 311 (330)
T 1wmw_A 296 AEGLALLEAAFQDLPG 311 (330)
T ss_dssp HHHHHHHHTGGGGCSC
T ss_pred HHHHHHHHHHhhcCCC
Confidence 88888887 7774
No 8
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=96.04 E-value=0.53 Score=45.64 Aligned_cols=139 Identities=16% Similarity=0.115 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCC-CchhhHHHHHHHHHHHHHHHHHHHhH-
Q 036368 188 PFRDMIEGMRMDTRKFR--YEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSS-SSAQSIYNGALNLGVGNQLTNILRDV- 263 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~~--~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~-~~~~~~~~~A~~LG~AlQLtNiLRDl- 263 (378)
...+|+.|..+|+.... -.|++++..-.++-.|++..+++.+..+-.... ...+.+.+.+.++|.|+|+.+=+-|+
T Consensus 161 ~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~ 240 (348)
T 3apz_A 161 AVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFT 240 (348)
T ss_dssp HHHHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35689999999997542 246777766666666777766665533221111 11234578899999999999888886
Q ss_pred ----------HHHHhcCCCCCCHHhHHhcCCChHhhhhccC--CHHHH---H------HHHHHHHHHHHHHHHHHHhhhc
Q 036368 264 ----------GEDASRGRVYLPQDELAQFGLCDKDVFARKV--TDNWR---E------FMKEQIKRARTFFNMAEEGASQ 322 (378)
Q Consensus 264 ----------~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~--~~~~~---~------~~~~l~~~A~~~l~~A~~~~~~ 322 (378)
+.|+..|.+-+|.=..-+..-...+++.... .+.+. + .+....+.++.+.++|...+..
T Consensus 241 gd~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~ 320 (348)
T 3apz_A 241 GTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGS 320 (348)
T ss_dssp TTTTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHc
Confidence 3688899999997653332212222222211 12222 2 2344456778888899888888
Q ss_pred cCcc
Q 036368 323 LDKD 326 (378)
Q Consensus 323 Lp~~ 326 (378)
+|..
T Consensus 321 l~~~ 324 (348)
T 3apz_A 321 LPET 324 (348)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 9
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=95.99 E-value=0.033 Score=54.10 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhcCCC-----CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 036368 188 PFRDMIEGMRMDTRKF-----RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNILRD 262 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~-----~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNiLRD 262 (378)
.+.+|++|...|+... ...|++++..-.++-.|++..+.+.+...-.+.....+.+...+.++|.|+|+.+=+-|
T Consensus 139 ~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~l~~~g~~lG~aFQi~DD~ld 218 (340)
T 2e8v_A 139 ELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLVPFINLLGIIYQIRDDYLN 218 (340)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4668999999998531 24588888888888778887777665432111100134567899999999999988887
Q ss_pred H-----------HHHHhcCCCCCCHHhH
Q 036368 263 V-----------GEDASRGRVYLPQDEL 279 (378)
Q Consensus 263 l-----------~eD~~~GR~YLP~d~L 279 (378)
+ +.|+..|.+-+|.=..
T Consensus 219 ~~~~~~~~GK~~g~Dl~egK~Tlp~i~a 246 (340)
T 2e8v_A 219 LKDFQMSSEKGFAEDITEGKLSFPIVHA 246 (340)
T ss_dssp HHC-----CCCTTHHHHTTCCCHHHHHH
T ss_pred ccCChhhhCCCchhhHhcCCchHHHHHH
Confidence 6 3688889998887543
No 10
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=95.91 E-value=0.18 Score=49.56 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhhcCCCC---CCCH-HHHHHHHHHhhhHH-HHHHHhh---hCcCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 036368 188 PFRDMIEGMRMDTRKFR---YEDF-QELYLYCYYVAGTV-GLMSVPV---MGIAPDSSSSAQSIYNGALNLGVGNQLTNI 259 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~~---~~t~-~dL~~Y~~~vAG~V-G~l~~~i---lg~~~~~~~~~~~~~~~A~~LG~AlQLtNi 259 (378)
...+|+.|...|+.... -.+. +++..-.++-.|.+ ..+.+.+ ++-.++.....+.+...+.++|.|+|+.+=
T Consensus 176 ~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD 255 (368)
T 2her_A 176 SIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHND 255 (368)
T ss_dssp HHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999997643 2344 44444445545554 3333332 332222210024578899999999999998
Q ss_pred HHhH------HHHHhcCCCCCCHHhHHhcCCChHh--hhhc---cCCHHHHHHH------HHHHHHHHHHHHHHHHhhhc
Q 036368 260 LRDV------GEDASRGRVYLPQDELAQFGLCDKD--VFAR---KVTDNWREFM------KEQIKRARTFFNMAEEGASQ 322 (378)
Q Consensus 260 LRDl------~eD~~~GR~YLP~d~L~~~Gvs~ed--l~~~---~~~~~~~~~~------~~l~~~A~~~l~~A~~~~~~ 322 (378)
+-|+ +.|+..|.+-+|.=..-+. .++++ ++.. ..+.++++++ ....+.++.++++|...+..
T Consensus 256 ~LD~~~~GK~g~Dl~egK~T~pvi~al~~-a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~ 334 (368)
T 2her_A 256 VSDYLFNDSNADDICRFKLTWPLQKSFEI-ADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKD 334 (368)
T ss_dssp HHHHHSCCSSSCTTTTTCCCHHHHSSTTT-CCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCChHhCCcccHHHHHHHHh-CCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 8887 4788899988876533221 12221 1111 1114444443 34556788999999999999
Q ss_pred cCccCCHHHHHHHHHHHHHHHHH
Q 036368 323 LDKDSRWPVWSSLLIYREILDAI 345 (378)
Q Consensus 323 Lp~~~r~~v~~~~~ly~~iL~~I 345 (378)
+|... +-.+...+...|.+.|
T Consensus 335 lp~~~--~k~~L~~l~~~i~~~~ 355 (368)
T 2her_A 335 ITDDS--LQKVFIHLIHQISELI 355 (368)
T ss_dssp CSCHH--HHHHHHHHHHHHHHHH
T ss_pred CCCcH--HHHHHHHHHHHHHHHh
Confidence 98741 1122333445555555
No 11
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=95.82 E-value=0.04 Score=53.08 Aligned_cols=123 Identities=17% Similarity=0.094 Sum_probs=76.5
Q ss_pred HHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCC-CC-CchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 036368 191 DMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPD-SS-SSAQSIYNGALNLGVGNQLTNILRDVGEDA 267 (378)
Q Consensus 191 ~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~-~~-~~~~~~~~~A~~LG~AlQLtNiLRDl~eD~ 267 (378)
+|+.|...|+... ...|++++..-.+.-.|++..+++.+..+-.+ .. ...+.+.+.+.++|.|+|+.+=+-|+-.|-
T Consensus 152 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 231 (317)
T 4f62_A 152 GMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDT 231 (317)
T ss_dssp THHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 5889999998653 34688888877777778777777665433222 11 112457789999999999998887773332
Q ss_pred -hcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 036368 268 -SRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 325 (378)
Q Consensus 268 -~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~ 325 (378)
..|+- .-+|+..|..+=-+.-.++.--+.++.+.++|.+.+..+|.
T Consensus 232 ~~~GK~------------~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 278 (317)
T 4f62_A 232 ETLGKT------------QFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD 278 (317)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HhhCCC------------cchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 11110 01344444444333335566677889999999999999886
No 12
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=95.71 E-value=0.3 Score=47.94 Aligned_cols=135 Identities=8% Similarity=-0.033 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhcCCCC---C----CCHHHHHHHHHHhhhHH-HHHHHhh---hCc-CCCCCCchhhHHHHHHHHHHHHHH
Q 036368 189 FRDMIEGMRMDTRKFR---Y----EDFQELYLYCYYVAGTV-GLMSVPV---MGI-APDSSSSAQSIYNGALNLGVGNQL 256 (378)
Q Consensus 189 l~~lieg~~~DL~~~~---~----~t~~dL~~Y~~~vAG~V-G~l~~~i---lg~-~~~~~~~~~~~~~~A~~LG~AlQL 256 (378)
..+++.|...|+.... . .|++++..-.++-.|.+ ..+.+.+ ++- .++ ...+.+...+.++|.|+|+
T Consensus 185 ~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~--~~~~~l~~~g~~lG~aFQI 262 (374)
T 2qis_A 185 SYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGE--KEHANAKKILLEMGEFFQI 262 (374)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHH
Confidence 4688999999986432 1 58888888888877777 5555543 321 221 1134567899999999999
Q ss_pred HHHHHhHH----------HHHhcCCCCCCHHhHHhcCCChH--hhhhc---cCCH-HHH---HHHH------HHHHHHHH
Q 036368 257 TNILRDVG----------EDASRGRVYLPQDELAQFGLCDK--DVFAR---KVTD-NWR---EFMK------EQIKRART 311 (378)
Q Consensus 257 tNiLRDl~----------eD~~~GR~YLP~d~L~~~Gvs~e--dl~~~---~~~~-~~~---~~~~------~l~~~A~~ 311 (378)
.+=+-|+- .|+..|++-+|.=..-+.. +++ +++.. ..++ .+. +++. .....++.
T Consensus 263 ~DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a-~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~ 341 (374)
T 2qis_A 263 QDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA-TPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEED 341 (374)
T ss_dssp HHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHccCChhhcCCchhHHHcCCccHHHHHHHHhC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHH
Confidence 99888874 4677888888875432221 221 11111 1112 222 2222 12334677
Q ss_pred HHHHHHHhhhccCcc
Q 036368 312 FFNMAEEGASQLDKD 326 (378)
Q Consensus 312 ~l~~A~~~~~~Lp~~ 326 (378)
++++|...+..+|..
T Consensus 342 ~~~~a~~~L~~lp~~ 356 (374)
T 2qis_A 342 SYSHIMALIEQYAAP 356 (374)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCc
Confidence 888888888777754
No 13
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=95.65 E-value=0.11 Score=50.25 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=77.9
Q ss_pred HHHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCC-CC-CchhhHHHHHHHHHHHHHHHHHHHhH---
Q 036368 190 RDMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPD-SS-SSAQSIYNGALNLGVGNQLTNILRDV--- 263 (378)
Q Consensus 190 ~~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~-~~-~~~~~~~~~A~~LG~AlQLtNiLRDl--- 263 (378)
.+|+.|...|+... .-.|++++..-.+.-.|++..+++.+..+-.+ .. ...+.+...+.++|.|+|+.+=+-|+
T Consensus 158 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d 237 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESD 237 (324)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 46899999998653 25688898888888888888777776443222 11 11235678999999999999877776
Q ss_pred --------HHHHhcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 036368 264 --------GEDASRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 264 --------~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
+.|+..|++-+|.= -.++.--+.++.+.++|...+..+|..
T Consensus 238 ~~~~GK~~g~Dl~egK~T~p~l----------------------~gle~a~~~a~~~~~~A~~~L~~l~~~ 286 (324)
T 3ts7_A 238 TQTLGKTRGKDRDHNKPNYPAL----------------------LGLSGAKEKAEEMHEAALESLAGFGPE 286 (324)
T ss_dssp ---------------CCCHHHH----------------------HCHHHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred HHHhCCCccchhhcCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34444455444433 234555677899999999999999875
No 14
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=95.64 E-value=0.21 Score=47.51 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhH---
Q 036368 188 PFRDMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNILRDV--- 263 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl--- 263 (378)
.+.+|++|...|+... ...|++++..-.++-.|++..+.+.+..+-..... +.+.+.+.++|.|+|+.+=+-|+
T Consensus 135 ~~~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~--~~l~~~g~~lG~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 135 VIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG--EDLYNLGVTIGTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 3568999999998631 22788888888888788887776665322111111 56788999999999999888776
Q ss_pred -------HHHHhcCCCCCCHHh
Q 036368 264 -------GEDASRGRVYLPQDE 278 (378)
Q Consensus 264 -------~eD~~~GR~YLP~d~ 278 (378)
+.|+..|.+-+|.=.
T Consensus 213 ~~~GK~~g~Dl~egK~T~p~l~ 234 (299)
T 1v4e_A 213 EKIGKDGFLDLKNGVASFPLVT 234 (299)
T ss_dssp CSCCTTSSCCCTTTTCCHHHHH
T ss_pred cccCCCcchHhhCCCchHHHHH
Confidence 456677888888654
No 15
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=95.55 E-value=0.064 Score=51.29 Aligned_cols=125 Identities=16% Similarity=0.093 Sum_probs=77.5
Q ss_pred HHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCC--CCCchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 036368 191 DMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPD--SSSSAQSIYNGALNLGVGNQLTNILRDVGEDA 267 (378)
Q Consensus 191 ~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~--~~~~~~~~~~~A~~LG~AlQLtNiLRDl~eD~ 267 (378)
+|+.|...|+... ...|++++..-.+.-.|++..+++.+..+-.+ +....+.+.+.+.++|.|+|+.+=+-|+-.|-
T Consensus 159 ~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~ 238 (302)
T 3p8r_A 159 GMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDT 238 (302)
T ss_dssp THHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 6889999998753 34588888877777777777777665433211 11113457789999999999988777763321
Q ss_pred hcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 036368 268 SRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 268 ~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
+.+.|- .-+|+..|..+=-+.-.+..--+.|+.+.++|.+.+..+|..
T Consensus 239 ---------~~~GK~--~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 286 (302)
T 3p8r_A 239 ---------ETLGKP--QGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN 286 (302)
T ss_dssp -------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred ---------HHhCCC--cchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 111110 113444444443333356666778899999999999999875
No 16
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=95.55 E-value=0.19 Score=49.54 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=83.6
Q ss_pred HHHHHHHHhhcCC--CCCCCHHHHHHHHHHhhhHH-HHHHHhh---hCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhH
Q 036368 190 RDMIEGMRMDTRK--FRYEDFQELYLYCYYVAGTV-GLMSVPV---MGIAPDSSSSAQSIYNGALNLGVGNQLTNILRDV 263 (378)
Q Consensus 190 ~~lieg~~~DL~~--~~~~t~~dL~~Y~~~vAG~V-G~l~~~i---lg~~~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl 263 (378)
.+|+.|...|+.. ..-.|++++..-.++-.|.+ ..+.+.+ ++-.++ ...+.+...+.++|.|+|+.+=+-|+
T Consensus 185 ~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~--~~~~~l~~~G~~lG~AFQI~DDiLd~ 262 (380)
T 3lk5_A 185 TEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSP--QLIDALLHYGHDIGIAFQLRDDLLGV 262 (380)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4778899999863 23458888877766666666 4444443 322221 11345778999999999999877776
Q ss_pred -----------HHHHhcCCCCCCHHhHHhcCC--Ch---Hhh---hhccCCH-H---HHHH------HHHHHHHHHHHHH
Q 036368 264 -----------GEDASRGRVYLPQDELAQFGL--CD---KDV---FARKVTD-N---WREF------MKEQIKRARTFFN 314 (378)
Q Consensus 264 -----------~eD~~~GR~YLP~d~L~~~Gv--s~---edl---~~~~~~~-~---~~~~------~~~l~~~A~~~l~ 314 (378)
+.|++.|++-+|.=..-+..- ++ +.| +....++ . +.++ +....+.++.+.+
T Consensus 263 ~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~ 342 (380)
T 3lk5_A 263 FGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTE 342 (380)
T ss_dssp HSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 678999999888654332210 11 111 1111122 1 2222 3345567889999
Q ss_pred HHHHhhhccCc
Q 036368 315 MAEEGASQLDK 325 (378)
Q Consensus 315 ~A~~~~~~Lp~ 325 (378)
+|...+..+|.
T Consensus 343 ~A~~~L~~lp~ 353 (380)
T 3lk5_A 343 SGLAHLDDVDI 353 (380)
T ss_dssp HHHHHGGGSCC
T ss_pred HHHHHHHhCCC
Confidence 99999999884
No 17
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=95.48 E-value=0.091 Score=51.41 Aligned_cols=138 Identities=15% Similarity=0.162 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhcCCC------------C--CCCHHHHHHHHHHhhhHHHHHHHhhhCcCCC-CCCchhhHHHHHHHHHH
Q 036368 188 PFRDMIEGMRMDTRKF------------R--YEDFQELYLYCYYVAGTVGLMSVPVMGIAPD-SSSSAQSIYNGALNLGV 252 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~------------~--~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~-~~~~~~~~~~~A~~LG~ 252 (378)
.+.+|+.|...|+... . -.|++++..-.++-.|++..+++.+..+-.+ +....+.+...+.++|.
T Consensus 140 ~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~ 219 (358)
T 4dhd_A 140 VIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGV 219 (358)
T ss_dssp HHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3458999999998753 2 4588888887888888887777665432111 11112456788999999
Q ss_pred HHHHHHHHHhH-----------HHHHhcCCC-CCCHHhHHhcCCChH---hh---h-hccCCH-HHHH---H------HH
Q 036368 253 GNQLTNILRDV-----------GEDASRGRV-YLPQDELAQFGLCDK---DV---F-ARKVTD-NWRE---F------MK 303 (378)
Q Consensus 253 AlQLtNiLRDl-----------~eD~~~GR~-YLP~d~L~~~Gvs~e---dl---~-~~~~~~-~~~~---~------~~ 303 (378)
|+|+.+=+-|+ +.|+..|.+ -+|.=..-+.. +++ .| + ++..++ .+.. + +.
T Consensus 220 aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~ 298 (358)
T 4dhd_A 220 AFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHL-GEGERRRLLEILAREVVEEADVREAVALLDSVGARE 298 (358)
T ss_dssp HHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHHS-CHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhC-ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHH
Confidence 99999877776 578899999 88875543331 221 11 1 111121 2222 2 23
Q ss_pred HHHHHHHHHHHHHHHhhhccCcc
Q 036368 304 EQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 304 ~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
.-.+.++.+.++|.+.+..+|..
T Consensus 299 ~a~~~a~~~~~~A~~~L~~lp~~ 321 (358)
T 4dhd_A 299 EALRLAARYREEAERHLAKIPNN 321 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 34667899999999999999853
No 18
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=95.45 E-value=0.23 Score=48.07 Aligned_cols=138 Identities=18% Similarity=0.189 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHhhhHHHHHHHhhhCcC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhH-
Q 036368 188 PFRDMIEGMRMDTRKF--RYEDFQELYLYCYYVAGTVGLMSVPVMGIA-PDSSSSAQSIYNGALNLGVGNQLTNILRDV- 263 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~--~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl- 263 (378)
...+|+.|...|+... .--|++++..-.+.-.|++..+++.+..+- ..+....+.+.+.+.++|.|+|+.+=+-|+
T Consensus 145 ~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 145 ASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3578999999998632 234888888888888888877776653321 111111245678899999999999877776
Q ss_pred ----------HHHHhcCCCCCCHHhHHhcCCChHh---hh---hccC-------------CHHHH---HH------HHHH
Q 036368 264 ----------GEDASRGRVYLPQDELAQFGLCDKD---VF---ARKV-------------TDNWR---EF------MKEQ 305 (378)
Q Consensus 264 ----------~eD~~~GR~YLP~d~L~~~Gvs~ed---l~---~~~~-------------~~~~~---~~------~~~l 305 (378)
+.|+..|.+-+|.=..-+.. ++++ +. .... .+.+. ++ +..-
T Consensus 225 ~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~-~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~ 303 (342)
T 1wy0_A 225 ADEKKLGKPVGSDIRKGKKTLIVAHFFENA-DEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYA 303 (342)
T ss_dssp SCHHHHTSCSCHHHHHTCCCHHHHHHHHHC-CHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHH
T ss_pred CChhhhCCCchhHHhCCCCcHHHHHHHHhC-CHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHH
Confidence 47888999999876543322 2211 11 1110 11122 22 2244
Q ss_pred HHHHHHHHHHHHHhhhccCcc
Q 036368 306 IKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 306 ~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
.+.++.+.++|...+..+|..
T Consensus 304 ~~~~~~~~~~A~~~L~~l~~~ 324 (342)
T 1wy0_A 304 AEIAKDMIKKANEALRILPKS 324 (342)
T ss_dssp HHHHHHHHHHHHTTGGGSCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 567788888998888888743
No 19
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=95.44 E-value=0.096 Score=50.33 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=76.4
Q ss_pred HHHHHHHHhhcCCCC--CCCHHHHHHHHHHhhhHHHHHHHhhhCcCCC--CC-CchhhHHHHHHHHHHHHHHHHHHHhHH
Q 036368 190 RDMIEGMRMDTRKFR--YEDFQELYLYCYYVAGTVGLMSVPVMGIAPD--SS-SSAQSIYNGALNLGVGNQLTNILRDVG 264 (378)
Q Consensus 190 ~~lieg~~~DL~~~~--~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~--~~-~~~~~~~~~A~~LG~AlQLtNiLRDl~ 264 (378)
..|+.|...|+.... -.|++++..-.+.-.|++..+++.+ .+-.+ .. ...+.+...+.++|.|+|+.+=+-|+-
T Consensus 158 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~ 236 (313)
T 3lom_A 158 SGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLY 236 (313)
T ss_dssp TTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368899999987532 5688888888877777777777666 43222 11 112457789999999999998777763
Q ss_pred -----------HHHhcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 036368 265 -----------EDASRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 265 -----------eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
.|+..|++-+|.= -.+..--+.++.+.++|.+.+..+|..
T Consensus 237 gd~~~~GK~~g~Dl~~gK~T~p~l----------------------~~l~~a~~~a~~~~~~A~~~L~~l~~~ 287 (313)
T 3lom_A 237 APTQILGKGRSSDQANQKTTFATL----------------------FNKQQLEEEIAVHYQIAMDSLRLFGSK 287 (313)
T ss_dssp CC---------------CCCHHHH----------------------SCHHHHHHHHHHHHHHHHHTTTTTGGG
T ss_pred CCHHhhCCCCcchhhcCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4444555544433 234555677889999999999988874
No 20
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=95.35 E-value=0.08 Score=51.45 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCC-CchhhHHHHHHHHHHHHHHHHHHHhH-
Q 036368 188 PFRDMIEGMRMDTRKF--RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSS-SSAQSIYNGALNLGVGNQLTNILRDV- 263 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~--~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~-~~~~~~~~~A~~LG~AlQLtNiLRDl- 263 (378)
.+.+|++|...|+... .-.|++++..-.++-.|++..+++.+..+-.+.. ...+.+...+.++|.|+|+.+=+-|+
T Consensus 147 ~~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~ 226 (341)
T 3mzv_A 147 ASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3568999999998642 3468888888778888888777766543211111 11245678999999999999877776
Q ss_pred ----------HHHHhcCCCCCCHHhHHhcCCChH------hhhh-cc-CCHHHHHH---------HHHHHHHHHHHHHHH
Q 036368 264 ----------GEDASRGRVYLPQDELAQFGLCDK------DVFA-RK-VTDNWREF---------MKEQIKRARTFFNMA 316 (378)
Q Consensus 264 ----------~eD~~~GR~YLP~d~L~~~Gvs~e------dl~~-~~-~~~~~~~~---------~~~l~~~A~~~l~~A 316 (378)
+.|+..|.+-+|.=..-+.. +++ +++. +. ..+.+..+ +..-.+.++.+.++|
T Consensus 227 ~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~-~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A 305 (341)
T 3mzv_A 227 GKSAEIGKNTGDDFRERKLTMPVIKAVALA-DEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTA 305 (341)
T ss_dssp ---------CCHHHHTTCCCHHHHHHHHTC-CHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CChhhcCCCCCcccccCchhHHHHHHHHhC-CHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 56889999999876544332 221 1111 11 12223222 345566788999999
Q ss_pred HHhhhccCcc
Q 036368 317 EEGASQLDKD 326 (378)
Q Consensus 317 ~~~~~~Lp~~ 326 (378)
...+..+|..
T Consensus 306 ~~~L~~lp~~ 315 (341)
T 3mzv_A 306 RKALAKLPDH 315 (341)
T ss_dssp HHHHTTSCCC
T ss_pred HHHHHhCCCC
Confidence 9999999864
No 21
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=95.33 E-value=0.37 Score=47.20 Aligned_cols=135 Identities=11% Similarity=-0.016 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCCC-------CCCHHHHHHHHHHhhhHH-HHHHHhh---hCc-CCCCCCchhhHHHHHHHHHHHHHH
Q 036368 189 FRDMIEGMRMDTRKFR-------YEDFQELYLYCYYVAGTV-GLMSVPV---MGI-APDSSSSAQSIYNGALNLGVGNQL 256 (378)
Q Consensus 189 l~~lieg~~~DL~~~~-------~~t~~dL~~Y~~~vAG~V-G~l~~~i---lg~-~~~~~~~~~~~~~~A~~LG~AlQL 256 (378)
..+++.|...|+.... -.|++++..-.++-.|.+ ..+.+.+ ++- .++. ..+.+...+.++|.|+|+
T Consensus 178 ~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~--~~~~l~~~g~~lG~aFQI 255 (367)
T 1uby_A 178 AYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKE--EHENAKAILLEMGEYFQI 255 (367)
T ss_dssp HHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHH--HHHHHHHHHHHHHHHHHH
Confidence 3578999999986422 358888877777777776 5444443 221 2211 134567889999999999
Q ss_pred HHHHHhHH----------HHHhcCCCCCCHHhHHhcCCChHh--hhh----ccCCHHHH---HHHH------HHHHHHHH
Q 036368 257 TNILRDVG----------EDASRGRVYLPQDELAQFGLCDKD--VFA----RKVTDNWR---EFMK------EQIKRART 311 (378)
Q Consensus 257 tNiLRDl~----------eD~~~GR~YLP~d~L~~~Gvs~ed--l~~----~~~~~~~~---~~~~------~l~~~A~~ 311 (378)
.+=+-|+- .|+..|++-+|.=..-+.. ++++ ++. ....+.+. +++. ..-..++.
T Consensus 256 ~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~ 334 (367)
T 1uby_A 256 QDDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRV-TPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEES 334 (367)
T ss_dssp HHHHHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhcCCchhhHHcCCchHHHHHHHHhC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888875 4677889888875432221 2221 111 11111222 2221 11135777
Q ss_pred HHHHHHHhhhccCcc
Q 036368 312 FFNMAEEGASQLDKD 326 (378)
Q Consensus 312 ~l~~A~~~~~~Lp~~ 326 (378)
++++|...+..+|..
T Consensus 335 ~~~~A~~~L~~lp~~ 349 (367)
T 1uby_A 335 SYRRLQELIEKHSNR 349 (367)
T ss_dssp HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhCCCc
Confidence 888888888877753
No 22
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=95.31 E-value=0.11 Score=50.87 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCC-CCCchhhHHHHHHHHHHHHHHHHHHHhH--
Q 036368 188 PFRDMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPD-SSSSAQSIYNGALNLGVGNQLTNILRDV-- 263 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~-~~~~~~~~~~~A~~LG~AlQLtNiLRDl-- 263 (378)
.+.+|+.|...|+... ...|++++..-.+.-.|++..+++.+..+-.. +....+.+...+.++|.|+|+.+=+-|+
T Consensus 168 ~~~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~ 247 (360)
T 3lmd_A 168 TFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFS 247 (360)
T ss_dssp HHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4568999999998743 22677777766777777777777665332111 1111345678899999999999877776
Q ss_pred ---------HHHHhcCCCCCCHHhHHhcCCCh--Hhh---hhc-cCCH-HHHH---------HHHHHHHHHHHHHHHHHH
Q 036368 264 ---------GEDASRGRVYLPQDELAQFGLCD--KDV---FAR-KVTD-NWRE---------FMKEQIKRARTFFNMAEE 318 (378)
Q Consensus 264 ---------~eD~~~GR~YLP~d~L~~~Gvs~--edl---~~~-~~~~-~~~~---------~~~~l~~~A~~~l~~A~~ 318 (378)
+.|+..|.+-+|.=..-+.+ ++ +.+ +.+ ..++ .+.. .+..--+.++.+.++|.+
T Consensus 248 d~~~~GK~~g~Dl~egK~Tlp~l~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~ 326 (360)
T 3lmd_A 248 ETHESGKTPGTDLREGVFTLPVLYALRED-TPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANA 326 (360)
T ss_dssp --------CCHHHHHTCCCHHHHHHHHCC-SHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhCCCchhHHhcCCchHHHHHHHHcC-CchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 46888999999976654442 22 112 111 1122 2222 234555678899999999
Q ss_pred hhhccCcc
Q 036368 319 GASQLDKD 326 (378)
Q Consensus 319 ~~~~Lp~~ 326 (378)
.+..+|..
T Consensus 327 ~L~~lp~~ 334 (360)
T 3lmd_A 327 ELDRLPDS 334 (360)
T ss_dssp HHTTSCCS
T ss_pred HHHhCCCc
Confidence 99999864
No 23
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=95.24 E-value=0.11 Score=50.11 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=73.9
Q ss_pred HHHHHHHHhhcCCCC--CCCHHHHHHHHHHhhhHHHHHHHhhhCcCCC-CCCchhhHHHHHHHHHHHHHHHHHHHhH---
Q 036368 190 RDMIEGMRMDTRKFR--YEDFQELYLYCYYVAGTVGLMSVPVMGIAPD-SSSSAQSIYNGALNLGVGNQLTNILRDV--- 263 (378)
Q Consensus 190 ~~lieg~~~DL~~~~--~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~-~~~~~~~~~~~A~~LG~AlQLtNiLRDl--- 263 (378)
.+|+.|...|+.... -.|++++..-.+.-.|++..+.+.+..+-.+ +....+.+.+.+.++|.|+|+.+=+-|+
T Consensus 180 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd 259 (324)
T 3uca_A 180 DGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGN 259 (324)
T ss_dssp TTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 368899999986532 4688888777767777777776665332111 1111345778999999999999877776
Q ss_pred --------HHHHhcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 036368 264 --------GEDASRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 264 --------~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
+.|+..|++-+|.= -.+..--+.++.+.++|.+.+..+|..
T Consensus 260 ~~~~GK~~g~Dl~egK~T~p~l----------------------~al~~a~~~a~~~~~~A~~~L~~l~~~ 308 (324)
T 3uca_A 260 AKDLGKNVHKDQESNKNNYITI----------------------FGLEECKKKCVNITEECIEILSSIKGN 308 (324)
T ss_dssp -----------------CHHHH----------------------HCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHhCCCcchHhhcCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 44555555544433 234555677888999999999999864
No 24
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=95.24 E-value=0.2 Score=47.78 Aligned_cols=123 Identities=13% Similarity=0.042 Sum_probs=71.5
Q ss_pred HHHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCC-CCCchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 036368 190 RDMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPD-SSSSAQSIYNGALNLGVGNQLTNILRDVGEDA 267 (378)
Q Consensus 190 ~~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~-~~~~~~~~~~~A~~LG~AlQLtNiLRDl~eD~ 267 (378)
.+|+.|...|+... .-.|++++..-.+.-.|++..+.+.+..+-.+ +....+.+.+.+.++|.|+|+.+=+-|+-.|-
T Consensus 156 ~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~ 235 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTE 235 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 36889999998643 24588888877777777777777665322111 11123457789999999999998777763221
Q ss_pred -hcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 036368 268 -SRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLD 324 (378)
Q Consensus 268 -~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp 324 (378)
..|+- .-+|+..|..+=-+.-.++.--+.++.+.++|.+.+..+|
T Consensus 236 ~~~GK~------------~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~ 281 (302)
T 3p8l_A 236 ADLGKK------------VGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIK 281 (302)
T ss_dssp ---------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCC------------hhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11110 0134444444433333445555667788888888887775
No 25
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=95.20 E-value=2.2 Score=40.43 Aligned_cols=198 Identities=10% Similarity=0.062 Sum_probs=116.9
Q ss_pred HHHHhcCCH---HHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHhC--
Q 036368 111 YLGTLLMTE---ERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFYGRP---YDMLDAALTDTVFKF-- 182 (378)
Q Consensus 111 yla~~llP~---~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~g~p---~~pv~~aL~~~v~~~-- 182 (378)
.+++.+.|. ++...+.-+.+|.-.+||+.|.... -....+..+.+.+.++..|.. ..|+..++.++..+.
T Consensus 52 ~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~--~~~ee~~~~~~~l~~~~~~~~p~~~~~~~~~l~d~~~~~~~ 129 (337)
T 1ps1_A 52 DLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRG--ENPEDTKQLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCE 129 (337)
T ss_dssp HHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGG--GCHHHHHHHHHHHHGGGTSCCCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCC--CCHHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHhc
Confidence 344556664 4444666777888899999997421 134556667778888776652 367888888776543
Q ss_pred CCCh-------HHHHHHHHHHHhhcC---CCCCC-CHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCC---chhhHHHHHH
Q 036368 183 PLDI-------KPFRDMIEGMRMDTR---KFRYE-DFQELYLYCYYVAGTVGLMSVPVMGIAPDSSS---SAQSIYNGAL 248 (378)
Q Consensus 183 ~l~~-------~~l~~lieg~~~DL~---~~~~~-t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~---~~~~~~~~A~ 248 (378)
..++ +.+.++++++.+... ...++ |++|...+-..+.|.--.+.+-.++....... ..........
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~l~~ 209 (337)
T 1ps1_A 130 GMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQ 209 (337)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHHHHHH
Confidence 2232 345566666665433 23567 89998888877777655444433322221110 0112224455
Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCC-CCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 036368 249 NLGVGNQLTNILRDVGEDASRGRV-YLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEG 319 (378)
Q Consensus 249 ~LG~AlQLtNiLRDl~eD~~~GR~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~ 319 (378)
..+....|+|=|-.......+|-+ =.-.-++.++|+|.++ ..+.+..+++.+.+.+.+....
T Consensus 210 ~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~~~~~~~~~~ 272 (337)
T 1ps1_A 210 IAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKSR---------SVSHMQNEVRARLEQYLLLESC 272 (337)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 667777778877777777778863 2234467888999774 3345566666666666665543
No 26
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=95.19 E-value=1.6 Score=42.64 Aligned_cols=200 Identities=16% Similarity=0.039 Sum_probs=115.8
Q ss_pred HHHHhcCCH---HHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHcCC---C--CcHHHHHHHHHHHhC
Q 036368 111 YLGTLLMTE---ERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFYGR---P--YDMLDAALTDTVFKF 182 (378)
Q Consensus 111 yla~~llP~---~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~g~---p--~~pv~~aL~~~v~~~ 182 (378)
.+++.+.|. ++-.-+.-+..|.-.+||+.|+...+ .....+..+.+.+.++..|. | .+|+..+|.++..+.
T Consensus 92 ~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g-~~~~~~~~~~~~l~~~l~~~~~~p~~~~p~~~al~dl~~~~ 170 (382)
T 3kb9_A 92 DLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVH-GRAGAWRRLRGLLHTALDSPGDHLHHEDTLVAGFADSVRRL 170 (382)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHSCGGGTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccc-cCHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHH
Confidence 345556555 44446667777788999999952211 12344555566666666552 2 468999999887755
Q ss_pred C--CChH-------HHHHHHHHHHhhcC---CCCCCCHHHHHHHHHHhhhHHHHHHHh--hhCcCCCCCC-chhhHHHHH
Q 036368 183 P--LDIK-------PFRDMIEGMRMDTR---KFRYEDFQELYLYCYYVAGTVGLMSVP--VMGIAPDSSS-SAQSIYNGA 247 (378)
Q Consensus 183 ~--l~~~-------~l~~lieg~~~DL~---~~~~~t~~dL~~Y~~~vAG~VG~l~~~--ilg~~~~~~~-~~~~~~~~A 247 (378)
. .++. .+.++++++..... ...++|++|...+-..+.|.--.+..- .+|..-.... .........
T Consensus 171 ~~~~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~p~~~~l~ 250 (382)
T 3kb9_A 171 YAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAA 250 (382)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhChHHHHHH
Confidence 3 3433 34566666655432 245789999999988888764433322 2443211000 011222344
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCC-CCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036368 248 LNLGVGNQLTNILRDVGEDASRGRV-YLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGA 320 (378)
Q Consensus 248 ~~LG~AlQLtNiLRDl~eD~~~GR~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~ 320 (378)
...+....|+|=|-.......+|.+ =+-.-++.++|+|.++ ..+.+..+++.+.+.+.++...+
T Consensus 251 ~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~k~~~~~~~~L 315 (382)
T 3kb9_A 251 LLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEE---------AIGEVRRRVEECITEFLAVERDA 315 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777766676777777864 2223356788999874 33445556665655555554433
No 27
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=95.14 E-value=0.25 Score=47.82 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCC-CchhhHHHHHHHHHHHHHHHHHHHhH-
Q 036368 188 PFRDMIEGMRMDTRKF--RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSS-SSAQSIYNGALNLGVGNQLTNILRDV- 263 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~--~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~-~~~~~~~~~A~~LG~AlQLtNiLRDl- 263 (378)
.+.+|+.|...|+... .-.|+++...-+++-.|++..+++.+..+-.+.. ...+.+...+.++|.|+|+.+=+-|+
T Consensus 151 ~~~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~ 230 (334)
T 3pko_A 151 AMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYA 230 (334)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4568999998888642 3457777766667777777776666533211111 11245678899999999999877765
Q ss_pred ----------HHHHhcCCCCCCHHhHHhcCCChHhh---h--hccCCHH-HH---HH------HHHHHHHHHHHHHHHHH
Q 036368 264 ----------GEDASRGRVYLPQDELAQFGLCDKDV---F--ARKVTDN-WR---EF------MKEQIKRARTFFNMAEE 318 (378)
Q Consensus 264 ----------~eD~~~GR~YLP~d~L~~~Gvs~edl---~--~~~~~~~-~~---~~------~~~l~~~A~~~l~~A~~ 318 (378)
+.|+..|.+-+|.=..-+.. ++++ + .+..++. +. ++ +..-.+.++.+.++|.+
T Consensus 231 ~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~--~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~ 308 (334)
T 3pko_A 231 GDPKRTQKPVLEDLRSGVYSLPLLLSLSHA--PRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALT 308 (334)
T ss_dssp SCTTSCCHHHHHHHHTTCCCHHHHHHGGGS--HHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCCCCCCccccCchhHHHHHHHHhC--cHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 67999999999976543321 1111 1 1112221 22 22 22445677888999998
Q ss_pred hhhccCcc
Q 036368 319 GASQLDKD 326 (378)
Q Consensus 319 ~~~~Lp~~ 326 (378)
.+..+|..
T Consensus 309 ~L~~lp~~ 316 (334)
T 3pko_A 309 LIQQLPVG 316 (334)
T ss_dssp HHTTSCSS
T ss_pred HHHhCCCc
Confidence 88888863
No 28
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=95.07 E-value=1.4 Score=43.63 Aligned_cols=136 Identities=12% Similarity=0.070 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhcC------------------CCC--------CCCHHHHHHHHHHhhhHH-HHHHHh---hhCcCCCCCC
Q 036368 189 FRDMIEGMRMDTR------------------KFR--------YEDFQELYLYCYYVAGTV-GLMSVP---VMGIAPDSSS 238 (378)
Q Consensus 189 l~~lieg~~~DL~------------------~~~--------~~t~~dL~~Y~~~vAG~V-G~l~~~---ilg~~~~~~~ 238 (378)
..+++.|...|+. ..+ -.|++++..-.++-.|.+ ..+.+. +++-.++...
T Consensus 187 ~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~ 266 (395)
T 2ihi_A 187 TLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNL 266 (395)
T ss_dssp HHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCT
T ss_pred HHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhH
Confidence 4688999999992 111 347777776666666665 333322 3332222110
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhH----------HHHHhcCCCCCCHHhHHhcCCChHh---hhh--ccCC-HHHHH--
Q 036368 239 SAQSIYNGALNLGVGNQLTNILRDV----------GEDASRGRVYLPQDELAQFGLCDKD---VFA--RKVT-DNWRE-- 300 (378)
Q Consensus 239 ~~~~~~~~A~~LG~AlQLtNiLRDl----------~eD~~~GR~YLP~d~L~~~Gvs~ed---l~~--~~~~-~~~~~-- 300 (378)
..+.+...+.++|.|+|+.+=+-|+ +.|+..|++-+|.=..-+. .++++ |.. +..+ +.+..
T Consensus 267 ~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~-~~~~~~~~L~~~~~~~~~~~~~~v~ 345 (395)
T 2ihi_A 267 IYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFEL-CSEPDKIKIVKNYGKNNLACVKVID 345 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHH-CCHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHHh-CCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 0355778999999999999988776 5678889998886543332 12221 211 1112 11111
Q ss_pred -------HHHHHHHHHHHHHHHHHHhhhccCc
Q 036368 301 -------FMKEQIKRARTFFNMAEEGASQLDK 325 (378)
Q Consensus 301 -------~~~~l~~~A~~~l~~A~~~~~~Lp~ 325 (378)
.+....+.++.++++|...+..+|.
T Consensus 346 ~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~ 377 (395)
T 2ihi_A 346 SLYEQYKIRKHYESYEKAQKAKILSAINELHH 377 (395)
T ss_dssp HC----CHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2334445677888888888888876
No 29
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=95.01 E-value=0.15 Score=48.56 Aligned_cols=124 Identities=16% Similarity=0.097 Sum_probs=78.7
Q ss_pred HHHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 036368 190 RDMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIA-PDSSSSAQSIYNGALNLGVGNQLTNILRDVGEDA 267 (378)
Q Consensus 190 ~~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl~eD~ 267 (378)
.+|++|...|+... .-.|++++..-.+.-.|++..+.+.+..+- ..+....+.+.+.+.++|.|+|+.+=+-|+-.|-
T Consensus 148 ~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~ 227 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE 227 (301)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 46899999998642 256888888888888888877776653221 1111113457789999999999998888886553
Q ss_pred h-cCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 036368 268 S-RGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 325 (378)
Q Consensus 268 ~-~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~ 325 (378)
. .|+- .-+|+..|..+=-+.-.++.--+.++.+.++|.+.+..+|.
T Consensus 228 ~~~GK~------------~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~ 274 (301)
T 1rtr_A 228 AKLGKK------------VGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDE 274 (301)
T ss_dssp CC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHhCCC------------cchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 2220 01344555544333344566677889999999999998984
No 30
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=94.92 E-value=0.096 Score=50.10 Aligned_cols=124 Identities=19% Similarity=0.116 Sum_probs=78.3
Q ss_pred HHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCC--CCCchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 036368 191 DMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPD--SSSSAQSIYNGALNLGVGNQLTNILRDVGEDA 267 (378)
Q Consensus 191 ~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~--~~~~~~~~~~~A~~LG~AlQLtNiLRDl~eD~ 267 (378)
.|+.|...|+... ...|++++..-.+.-.|++..+++.+..+-.+ +....+.+...+.++|.|+|+.+=+-|+-.|-
T Consensus 153 ~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~ 232 (304)
T 3lsn_A 153 GMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDT 232 (304)
T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 4899999998643 24688888887777778787777665332111 11113457789999999999999888875543
Q ss_pred -hcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 036368 268 -SRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 268 -~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
..|+- .-+|+..|..+=-+.-.++.--+.++.+.++|.+.+..+|..
T Consensus 233 ~~~GK~------------~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 280 (304)
T 3lsn_A 233 ATLGKR------------QGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA 280 (304)
T ss_dssp HHC------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHhCCC------------cccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 22321 113444454443333345666778899999999999999863
No 31
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=94.62 E-value=0.22 Score=47.77 Aligned_cols=135 Identities=19% Similarity=0.103 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhH--
Q 036368 188 PFRDMIEGMRMDTRKF--RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNILRDV-- 263 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~--~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl-- 263 (378)
.+.+|+.|...|+... .-.|++++..-.++-.|++..+.+.+...-.+.. .+.+...+.++|.|+|+.+=+-|+
T Consensus 130 ~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~~l~~~g~~lG~aFQI~DD~ld~~~ 207 (315)
T 3tc1_A 130 AVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--AKIYADFGLNFGMAFQIIDDLLDITQ 207 (315)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3568899999998642 3468888877777777777777766543321211 466788999999999999988886
Q ss_pred ---------HHHHhcCCCCCCHHhHHhcCCChH---hh---hhccCCHHHHH---------HHHHHHHHHHHHHHHHHHh
Q 036368 264 ---------GEDASRGRVYLPQDELAQFGLCDK---DV---FARKVTDNWRE---------FMKEQIKRARTFFNMAEEG 319 (378)
Q Consensus 264 ---------~eD~~~GR~YLP~d~L~~~Gvs~e---dl---~~~~~~~~~~~---------~~~~l~~~A~~~l~~A~~~ 319 (378)
+.|+..|++-+|.=..-+.. +++ .+ +.....+.+.. .+..-.+.++.+.++|.+.
T Consensus 208 d~~~~GK~~g~Dl~egK~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~ 286 (315)
T 3tc1_A 208 DAKTLGKPNFSDFKEGKTTLPYLLLYEKL-NQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEA 286 (315)
T ss_dssp CTTCCCCCCCCTGGGTCCCHHHHHHHTTS-CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHhCCChhhHHHcCChhHHHHHHHHhC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 56888999999876544432 222 12 22221122222 2334455778889999988
Q ss_pred hhccCc
Q 036368 320 ASQLDK 325 (378)
Q Consensus 320 ~~~Lp~ 325 (378)
+..+|.
T Consensus 287 L~~lp~ 292 (315)
T 3tc1_A 287 IKGENN 292 (315)
T ss_dssp TTTTCC
T ss_pred HHhCCC
Confidence 888875
No 32
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=94.56 E-value=0.45 Score=45.68 Aligned_cols=139 Identities=13% Similarity=0.052 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCC-CchhhHHHHHHHHHHHHHHHHHHHhH-
Q 036368 188 PFRDMIEGMRMDTRKF--RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSS-SSAQSIYNGALNLGVGNQLTNILRDV- 263 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~--~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~-~~~~~~~~~A~~LG~AlQLtNiLRDl- 263 (378)
...+|++|...|+... .-.|++++..-.++-.|++..+.+.+...-.+.. ...+.+.+.+.++|.|+|+.+=+-|+
T Consensus 138 ~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~ 217 (325)
T 3aqb_B 138 TILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3468999999998643 2468888888888888888877777643322211 11345678899999999999877775
Q ss_pred ----------HHHHhcCCCCCCHHhHHhcC-CCh-H------hhhhc-cCCHHHH---HH-----HHHHHHHHHHHHHHH
Q 036368 264 ----------GEDASRGRVYLPQDELAQFG-LCD-K------DVFAR-KVTDNWR---EF-----MKEQIKRARTFFNMA 316 (378)
Q Consensus 264 ----------~eD~~~GR~YLP~d~L~~~G-vs~-e------dl~~~-~~~~~~~---~~-----~~~l~~~A~~~l~~A 316 (378)
+.|+..|.+-+|.=..-+.. -.. + +++.. ...+.+. ++ +....+.++.+.++|
T Consensus 218 ~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A 297 (325)
T 3aqb_B 218 SDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKA 297 (325)
T ss_dssp SCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CChhhcCCccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999988875432211 000 0 11111 1111222 22 222345677888888
Q ss_pred HHhhhccCcc
Q 036368 317 EEGASQLDKD 326 (378)
Q Consensus 317 ~~~~~~Lp~~ 326 (378)
...+..+|..
T Consensus 298 ~~~L~~lp~~ 307 (325)
T 3aqb_B 298 KYHLSQLQDS 307 (325)
T ss_dssp HHHHHTSCCC
T ss_pred HHHHHhCCCc
Confidence 8888888754
No 33
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=94.47 E-value=0.48 Score=46.00 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCC-CchhhHHHHHHHHHHHHHHHHHHHhH-
Q 036368 188 PFRDMIEGMRMDTRKF--RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSS-SSAQSIYNGALNLGVGNQLTNILRDV- 263 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~--~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~-~~~~~~~~~A~~LG~AlQLtNiLRDl- 263 (378)
.+.+|++|...|+... .-.|++++..-.+.-.|++..+++.+..+-.+.. ...+.+...+.++|.|+|+.+=+-|+
T Consensus 159 ~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~ 238 (345)
T 3oyr_A 159 ASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYG 238 (345)
T ss_dssp HHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3458999999998653 2468888888888888888777776533211111 11345778999999999999877664
Q ss_pred ----------HHHHhcCCCCCCHHhHHhcCCChH-hhh----h-cc-CC---HHHHHH------HHHHHHHHHHHHHHHH
Q 036368 264 ----------GEDASRGRVYLPQDELAQFGLCDK-DVF----A-RK-VT---DNWREF------MKEQIKRARTFFNMAE 317 (378)
Q Consensus 264 ----------~eD~~~GR~YLP~d~L~~~Gvs~e-dl~----~-~~-~~---~~~~~~------~~~l~~~A~~~l~~A~ 317 (378)
+.|+..|.+-+|.=..-+.+-..+ +.+ . +. .. ..+.++ +..-.+.++.+.++|.
T Consensus 239 ~d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~ 318 (345)
T 3oyr_A 239 GATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAK 318 (345)
T ss_dssp ------------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 568889999998765544322211 111 1 11 11 122222 3455677889999999
Q ss_pred HhhhccCcc
Q 036368 318 EGASQLDKD 326 (378)
Q Consensus 318 ~~~~~Lp~~ 326 (378)
+.+..+|..
T Consensus 319 ~~L~~lp~~ 327 (345)
T 3oyr_A 319 AALAMFPAN 327 (345)
T ss_dssp HTTTTSCSS
T ss_pred HHHHhCCCc
Confidence 999999863
No 34
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=94.19 E-value=0.52 Score=45.92 Aligned_cols=135 Identities=10% Similarity=-0.051 Sum_probs=84.1
Q ss_pred HHHHHHHHHhhcCCC--------------C----CCCHHHHHHHHHHhhhHH-HHHHHhh---hCc-CCCCCCchhhHHH
Q 036368 189 FRDMIEGMRMDTRKF--------------R----YEDFQELYLYCYYVAGTV-GLMSVPV---MGI-APDSSSSAQSIYN 245 (378)
Q Consensus 189 l~~lieg~~~DL~~~--------------~----~~t~~dL~~Y~~~vAG~V-G~l~~~i---lg~-~~~~~~~~~~~~~ 245 (378)
..+|+.|...|+... . -.|++++..-+++-.|.+ ..+.+.+ ++- .++. ..+.+..
T Consensus 160 ~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~--~~~~l~~ 237 (362)
T 1yhl_A 160 DYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASV--EMNLVER 237 (362)
T ss_dssp HHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGS--CHHHHHH
T ss_pred HHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHH--HHHHHHH
Confidence 468999999999755 2 257888877777777777 5555543 322 1211 2356778
Q ss_pred HHHHHHHHHHHHHHHHhHH----------HHHhcCCCCCCHHhHHhcCCChHh---hh---hccCCHH---HHHHHH---
Q 036368 246 GALNLGVGNQLTNILRDVG----------EDASRGRVYLPQDELAQFGLCDKD---VF---ARKVTDN---WREFMK--- 303 (378)
Q Consensus 246 ~A~~LG~AlQLtNiLRDl~----------eD~~~GR~YLP~d~L~~~Gvs~ed---l~---~~~~~~~---~~~~~~--- 303 (378)
.+.++|.|+|+.+=+-|+- .|+..|.+-+|.=..-+.. ++++ +. .....+. +.+++.
T Consensus 238 ~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g 316 (362)
T 1yhl_A 238 VAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKA-NAAQVAEFKANYGDKDPAKVAVVKRLYSEAN 316 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Confidence 9999999999999888874 5777888888875433321 2221 21 1111112 222222
Q ss_pred ---HHHHHHHHHHHHHHHhhhccCcc
Q 036368 304 ---EQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 304 ---~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
...+.++.++++|...+..+|..
T Consensus 317 ~~~~~~~~~~~~~~~A~~~L~~lp~~ 342 (362)
T 1yhl_A 317 LQADFAAYEAEVVREVESLIEQLKVK 342 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 23356677778888777777754
No 35
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=93.85 E-value=0.31 Score=46.65 Aligned_cols=125 Identities=14% Similarity=0.036 Sum_probs=74.4
Q ss_pred HHHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 036368 190 RDMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIA-PDSSSSAQSIYNGALNLGVGNQLTNILRDVGEDA 267 (378)
Q Consensus 190 ~~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl~eD~ 267 (378)
.+|+.|...|+... .-.|++++..-.+.-.|++..+.+.+..+- +.+....+.+...+.++|.|+|+.+=+-|+-.|-
T Consensus 155 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~ 234 (309)
T 3pde_A 155 SGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSP 234 (309)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 36889999998653 245888888777777777877766643221 1111123567789999999999998777774321
Q ss_pred hcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 036368 268 SRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 325 (378)
Q Consensus 268 ~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~ 325 (378)
+.+.+- .-+|+..|..+=-+.-.++.--+.++.++++|...+..+|.
T Consensus 235 ---------~~~GK~--~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~~ 281 (309)
T 3pde_A 235 ---------AEMGKA--TQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLPT 281 (309)
T ss_dssp ---------------------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ---------HHhCCC--ccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 111110 11344444444333334444556677778888877776544
No 36
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=93.79 E-value=0.45 Score=45.21 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhcCCCC-CCCHHHHHHHHHHhhhHHHHHHHhhhCcC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 036368 189 FRDMIEGMRMDTRKFR-YEDFQELYLYCYYVAGTVGLMSVPVMGIA-PDSSSSAQSIYNGALNLGVGNQLTNILRDVGED 266 (378)
Q Consensus 189 l~~lieg~~~DL~~~~-~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl~eD 266 (378)
..+|+.|...|+.... ..|.+++..-.+.-.|++..+++.+..+- +.+....+.+...+.++|.|+|+.+=+-|+-.+
T Consensus 136 ~~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~ 215 (295)
T 3ipi_A 136 GMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEV 215 (295)
T ss_dssp HHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4579999999987532 34667776667777787777776653321 111111245678899999999999888887543
Q ss_pred -----HhcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 036368 267 -----ASRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 267 -----~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
...|.+-+|.=...+. .+ ...++.-.+.|+.+.++|...+..+|..
T Consensus 216 ~~gkd~~~gk~Tlp~l~al~~------------~~--~~~le~a~~~a~~~~~~A~~~L~~lp~~ 266 (295)
T 3ipi_A 216 VEGKESKFTSETLPHIYMKST------------SK--EEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp HHC-------CCHHHHHTTTS------------CH--HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred ccCCCcccCcccHHHHHHHhc------------Cc--hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4455555554322111 11 1236667778899999999999999853
No 37
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=93.45 E-value=0.19 Score=48.69 Aligned_cols=124 Identities=17% Similarity=0.064 Sum_probs=74.3
Q ss_pred HHHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 036368 190 RDMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIA-PDSSSSAQSIYNGALNLGVGNQLTNILRDVGEDA 267 (378)
Q Consensus 190 ~~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl~eD~ 267 (378)
.+|+.|...|+... .-.|++++..-.+.-.|.+..+.+.+..+- ..+....+.+.+.+.++|.|+|+.+=+-|+-.|-
T Consensus 192 ~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 271 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADA 271 (335)
T ss_dssp TSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 46889999998531 246888888888888888877766653221 1111113457789999999999998777763332
Q ss_pred h-cCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 036368 268 S-RGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 325 (378)
Q Consensus 268 ~-~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~ 325 (378)
. .|+ | .-+|+..|..+=-+.-.++.--+.++.+.++|.+.+..+|.
T Consensus 272 ~~~GK---~---------~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~ 318 (335)
T 2h8o_A 272 ATMGK---A---------TGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE 318 (335)
T ss_dssp --------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HHhCC---C---------cchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 1 111 0 01233333333222223456667788899999998888875
No 38
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=93.36 E-value=1.6 Score=42.95 Aligned_cols=136 Identities=10% Similarity=-0.025 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhcCCC------------------CCCCHHHHHHHHHHhhhHH-HHHHHhh---hCcCCCCCCchhhHHHH
Q 036368 189 FRDMIEGMRMDTRKF------------------RYEDFQELYLYCYYVAGTV-GLMSVPV---MGIAPDSSSSAQSIYNG 246 (378)
Q Consensus 189 l~~lieg~~~DL~~~------------------~~~t~~dL~~Y~~~vAG~V-G~l~~~i---lg~~~~~~~~~~~~~~~ 246 (378)
..+++.|...|+... .-.|++++..-+++-.|.+ ..+.+.+ ++-.++.. ..+.+...
T Consensus 188 ~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~-~~~~l~~~ 266 (390)
T 3dyh_A 188 DYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTV-DMGVTEEL 266 (390)
T ss_dssp HHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGS-CHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHH-HHHHHHHH
Confidence 457899999999651 1357888877777777766 4444443 32211110 12456789
Q ss_pred HHHHHHHHHHHHHHHhHH----------HHHhcCCCCCCHHhHHhcCCChHh---hhh--ccCCH-H---HHHH------
Q 036368 247 ALNLGVGNQLTNILRDVG----------EDASRGRVYLPQDELAQFGLCDKD---VFA--RKVTD-N---WREF------ 301 (378)
Q Consensus 247 A~~LG~AlQLtNiLRDl~----------eD~~~GR~YLP~d~L~~~Gvs~ed---l~~--~~~~~-~---~~~~------ 301 (378)
+.++|.|+|+.+=+-|+- .|+..|++-+|.=..-+.. ++++ |.. +..++ . ++++
T Consensus 267 g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~pvi~al~~~-~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~ 345 (390)
T 3dyh_A 267 AMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKA-SSAQVAEFKANYGSGDSEKVATVRRLYEEADL 345 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHHHC-CHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHhhcCChHHhCCCcchhhcCCccHHHHHHHHhC-CHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCc
Confidence 999999999999888874 4788899988765433321 2221 211 11122 2 2222
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcc
Q 036368 302 MKEQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 302 ~~~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
+..-...++.+++++.+.+..||..
T Consensus 346 ~~~~~~~~~~~~~~a~~~i~~l~~~ 370 (390)
T 3dyh_A 346 QGDYVAYEAAVAEQVKELIEKLRLC 370 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 2223334567777777777777653
No 39
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=93.16 E-value=0.059 Score=51.41 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=71.2
Q ss_pred HHHHHHHHhhcCCC---CCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhH---
Q 036368 190 RDMIEGMRMDTRKF---RYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNILRDV--- 263 (378)
Q Consensus 190 ~~lieg~~~DL~~~---~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl--- 263 (378)
.+|+.|...|+... .-.|++++..-.+.-.|++..+++.+..+-.+.. .+.+.+.+.++|.|+|+.+=+-|+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~--~~~l~~~g~~lG~aFQI~DDilD~~~~ 224 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGAD--RGPLTAYATALGLAFQIADDILDVEGN 224 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 46899999998643 3568888888888888888777666532211111 126788999999999998755554
Q ss_pred --------HHHHhcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 036368 264 --------GEDASRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 264 --------~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
+.|+..|++-+|.=. .++.--+.++.+.++|...+..+|..
T Consensus 225 ~~~~GK~~g~Dl~~gK~T~p~l~----------------------~l~~a~~~~~~~~~~A~~~L~~~~~~ 273 (297)
T 3m0g_A 225 EEAAGKRLGKDAEAHKATFVSLL----------------------GLAGAKSRAADLVAEAEAALAPYGEA 273 (297)
T ss_dssp ----------------CCHHHHH----------------------CSSHHHHHHHHHHHHHHHHTGGGGGG
T ss_pred HHHhCCCccchhhcCCccHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 445555555555432 23334456788888998888888865
No 40
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=92.45 E-value=1 Score=42.40 Aligned_cols=121 Identities=15% Similarity=0.050 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 036368 189 FRDMIEGMRMDTRKF--R-YEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNILRDVGE 265 (378)
Q Consensus 189 l~~lieg~~~DL~~~--~-~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl~e 265 (378)
..+|+.|...|+... . -.|++++..-.+.-.|++..+.+.+..+-.+.. .+.+.+.+.++|.|+|+.+=+-|+-.
T Consensus 143 ~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~--~~~l~~~g~~lG~aFQI~DD~lD~~~ 220 (284)
T 2ftz_A 143 AYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXD--HTXMXLLGEXFGVAFQIYDDLXDILG 220 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 468999999998532 2 568899988888888888777766533211111 12678899999999999988888866
Q ss_pred HHh-cCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 036368 266 DAS-RGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 325 (378)
Q Consensus 266 D~~-~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~ 325 (378)
|-. .|+- .- +|+. ..+=-+.-.++.--+.++.+.++|.+.+..+|.
T Consensus 221 d~~~~GK~-~g-----------~Dl~--K~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 267 (284)
T 2ftz_A 221 SFEKVGKD-LG-----------KDTE--XVTLVXXVGIQXAREMADXYYEEVLXGIESEGL 267 (284)
T ss_dssp HCCCC-------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHhhCCC-cc-----------hhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 642 3321 00 1221 111111222445567788888888888888874
No 41
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=92.44 E-value=1.2 Score=42.11 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=69.0
Q ss_pred HHHHHHHhhcCCCCC----CCHHHHHHHHHHhhhHHHHHHHhhhCcC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhHHH
Q 036368 191 DMIEGMRMDTRKFRY----EDFQELYLYCYYVAGTVGLMSVPVMGIA-PDSSSSAQSIYNGALNLGVGNQLTNILRDVGE 265 (378)
Q Consensus 191 ~lieg~~~DL~~~~~----~t~~dL~~Y~~~vAG~VG~l~~~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl~e 265 (378)
+|++|...|+....- .|++++..-.+.-.|++..+.+.+..+- ..+....+.+.+.+.++|.|+|+.+=+-|+-.
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~ 240 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTK 240 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 588999999975331 2444554445566677766666543221 11111134567899999999999988878765
Q ss_pred HHhcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCC
Q 036368 266 DASRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKDSR 328 (378)
Q Consensus 266 D~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~~r 328 (378)
|. +.-+|.= -.++.-.+.++.+.++|.+.+..+|...+
T Consensus 241 ~~---K~T~p~l----------------------~gle~a~~~a~~~~~~A~~~L~~l~~~~~ 278 (293)
T 2j1p_A 241 SS---KLTYPKL----------------------MGLEKSREFAEKLNTEARDQLLGFDSDKV 278 (293)
T ss_dssp -----CCCHHHH----------------------HHHHHHHHHHHHHHHHHHHHTTTSCTTTT
T ss_pred Cc---cccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 54 2223311 13445556788889999999888874444
No 42
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=92.40 E-value=6.7 Score=36.18 Aligned_cols=194 Identities=12% Similarity=0.048 Sum_probs=104.0
Q ss_pred HHHhcCCH---HHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHcCC--C--CcHHHHHHHHHHHhCCC
Q 036368 112 LGTLLMTE---ERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFYGR--P--YDMLDAALTDTVFKFPL 184 (378)
Q Consensus 112 la~~llP~---~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~g~--p--~~pv~~aL~~~v~~~~l 184 (378)
+++.+.|. ++...+.-+..|.-.+||+.|... ...+..+-+.+.++..|. | ..|+..+|.++..+..-
T Consensus 49 ~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~~~-----~~e~~~~~~~~~~~~~~~~lp~~~~~~~~~l~d~~~~~~~ 123 (300)
T 1di1_A 49 VTCLYFPLALDDRIHFACRLLTVLFLIDDVLEHMS-----FADGEAYNNRLIPISRGDVLPDRTKPEEFILYDLWESMRA 123 (300)
T ss_dssp HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHHSC-----HHHHHHHHHHHHHHHHTSSCCCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHhccccCC-----HHHHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHh
Confidence 44555565 444466677888889999999732 223444556666665553 2 35777777766553311
Q ss_pred -----ChHHHHHHHHHHHh--hcCCCCCCCHHHHHHHHHHhhhHHHHHHHhh--hCcCCCCCCchhhHHHHHHHHHHHHH
Q 036368 185 -----DIKPFRDMIEGMRM--DTRKFRYEDFQELYLYCYYVAGTVGLMSVPV--MGIAPDSSSSAQSIYNGALNLGVGNQ 255 (378)
Q Consensus 185 -----~~~~l~~lieg~~~--DL~~~~~~t~~dL~~Y~~~vAG~VG~l~~~i--lg~~~~~~~~~~~~~~~A~~LG~AlQ 255 (378)
-++.+..++.++.. +.....++|++|...+-..+.|.--.+.+-. +|..-+.. ..+.........+....
T Consensus 124 ~~~~~~~~~~~~~~~~~~ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e-~~~~~~~l~~~~~~~~~ 202 (300)
T 1di1_A 124 HDAELANEVLEPTFVFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSAD-ELQDMKALEANCAKQLS 202 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHH-HHHTTHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHH
Confidence 11234556666532 2223467899999888887777544333333 44321100 01122233344444444
Q ss_pred HHHHHHhHHHHHhcCCC---------CCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036368 256 LTNILRDVGEDASRGRV---------YLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGA 320 (378)
Q Consensus 256 LtNiLRDl~eD~~~GR~---------YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~ 320 (378)
|+|=|-.......+|-. -.-.=++.++|+|.++ ..+.+..+++.+.+.+....+.+
T Consensus 203 l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~~~~~l 267 (300)
T 1di1_A 203 VVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPA---------TKRVLWSMTREWETVHDEIVAEK 267 (300)
T ss_dssp HHHHHHHTTTTCCC----------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHhhccccccccccchhHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433333333344431 2334467788998763 34456667777766666665433
No 43
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=92.28 E-value=0.41 Score=45.46 Aligned_cols=124 Identities=19% Similarity=0.133 Sum_probs=76.2
Q ss_pred HHHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcC-CCC-CCchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 036368 190 RDMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIA-PDS-SSSAQSIYNGALNLGVGNQLTNILRDVGED 266 (378)
Q Consensus 190 ~~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~-~~~-~~~~~~~~~~A~~LG~AlQLtNiLRDl~eD 266 (378)
.+|+.|...|+... ...|++++..-.+.-.|++..+.+.+..+- ... ....+.+.+.+.++|.|+|+.+=+-|+-.|
T Consensus 152 ~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~ 231 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299)
T ss_dssp TTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 47889999998642 245888888888777788877777654332 111 011235678899999999999877776433
Q ss_pred H-hcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 036368 267 A-SRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 325 (378)
Q Consensus 267 ~-~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~ 325 (378)
- ..|+- .-+|+..|..+=-+.-.++.--+.++.+.++|.+.+..+|.
T Consensus 232 ~~~~GK~------------~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~ 279 (299)
T 1rqj_A 232 TATLGKR------------QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAE 279 (299)
T ss_dssp HHHHSSC------------TTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCC------------hhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 11210 01233333333222223344456778888888888877764
No 44
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=91.92 E-value=5.9 Score=40.70 Aligned_cols=191 Identities=15% Similarity=0.078 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHcC----CCC--cHHHHHHHHHHHhC--------CCC
Q 036368 120 ERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFYG----RPY--DMLDAALTDTVFKF--------PLD 185 (378)
Q Consensus 120 ~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~g----~p~--~pv~~aL~~~v~~~--------~l~ 185 (378)
..|-.+.-+.+|.-.+||+-|.... ...++.+-+.+++...+ .|. .++..+|.+++.+. +..
T Consensus 286 ~~Rl~~aK~~~l~tviDD~yD~~gt----~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~ 361 (549)
T 1n1b_A 286 YQRKMAATIIVLATVIDDIYDVYGT----LDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFF 361 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3455666666777889999997542 34455555666544221 132 34556666655422 211
Q ss_pred -----hHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHH-------HHHHHH
Q 036368 186 -----IKPFRDMIEGMRMDT---RKFRYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIY-------NGALNL 250 (378)
Q Consensus 186 -----~~~l~~lieg~~~DL---~~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~-------~~A~~L 250 (378)
++.+.++++++.... .....+|++|.......++|.--.++...++..+... .+.+. ......
T Consensus 362 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt--~e~~~e~~~~~p~i~~~~ 439 (549)
T 1n1b_A 362 CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASH--DTAVIDSLYQYHDILCLA 439 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCC--CHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCc--HHHHHhhhcccHHHHHHH
Confidence 345667777775443 3345689999999988888765555555555443221 12201 223333
Q ss_pred HHHHHHHHHHHhHHHHHhcCCCC-CCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 036368 251 GVGNQLTNILRDVGEDASRGRVY-LPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 325 (378)
Q Consensus 251 G~AlQLtNiLRDl~eD~~~GR~Y-LP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~ 325 (378)
+....|.|=|........+|.+- .=.-.|.++|+|.++ ..+-+..+++.+.+-+++..-....+|.
T Consensus 440 ~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~ee---------A~~~i~~~i~~~wk~ln~e~l~~~~vp~ 506 (549)
T 1n1b_A 440 GIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEE---------AVEHVKFLIREAWKDMNTAIAAGYPFPD 506 (549)
T ss_dssp HHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHHHHTCCSSCH
T ss_pred HHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 44444444444444455566531 113467889999874 4456777888888877775422223454
No 45
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=91.46 E-value=1.1 Score=42.40 Aligned_cols=112 Identities=13% Similarity=0.025 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhHHHHHHHhh---hCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhHH
Q 036368 188 PFRDMIEGMRMDTRKFRYEDFQELYLYCYYVAGTVGLMSVPV---MGIAPDSSSSAQSIYNGALNLGVGNQLTNILRDVG 264 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~~~~t~~dL~~Y~~~vAG~VG~l~~~i---lg~~~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl~ 264 (378)
...+|++|...|+.. ++++....++-.|++..+.+.+ ++ .++. ..+.+.+.+.++|.|+|+.+=+-|+-
T Consensus 143 ~~~~~~~GQ~~dl~~-----~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~--~~~~l~~~g~~lG~aFQi~DDilD~~ 214 (289)
T 2azj_A 143 LWKDTSVGALRDMYD-----NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYN--TKQQMLDVGKYLGIIYQVIDDFVDYK 214 (289)
T ss_dssp HHHHHHHHHHHTTTT-----TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGG--GHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh-----HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHH--HHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 356899999999974 4555555666667776666554 44 3221 23457789999999999998777774
Q ss_pred HH----HhcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 036368 265 ED----ASRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 325 (378)
Q Consensus 265 eD----~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~ 325 (378)
.+ +..|.+-+|.=. .+.| ....+ -..++.+.++|.+.+..+|.
T Consensus 215 ~~~K~dl~~gk~Tlp~l~-~~~g--------------~~~a~---~~~a~~~~~~A~~~L~~lp~ 261 (289)
T 2azj_A 215 TKKVEEIDGSAKQLFKYY-REGK--------------LEEYV---RSVYLEYKQKYDELISNIPF 261 (289)
T ss_dssp TSCTTTCCTTGGGGHHHH-TTTC--------------HHHHH---HHHHHHHHHHHHHHHHTSCC
T ss_pred CCCChhhhcCcccHHHHH-HcCC--------------HHHHH---HHHHHHHHHHHHHHHHhCCC
Confidence 32 222333333322 1111 11111 24788999999999988886
No 46
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=90.22 E-value=15 Score=36.01 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=75.7
Q ss_pred HHHHHHHHHhhcCCCC--------------------------CCCHHHHHHHHHHhhhHH-HHHHHh---hh-CcCCCCC
Q 036368 189 FRDMIEGMRMDTRKFR--------------------------YEDFQELYLYCYYVAGTV-GLMSVP---VM-GIAPDSS 237 (378)
Q Consensus 189 l~~lieg~~~DL~~~~--------------------------~~t~~dL~~Y~~~vAG~V-G~l~~~---il-g~~~~~~ 237 (378)
..++++|..+|+.... -.|++++..=.++=.|.+ ..+.+. ++ |...+ .
T Consensus 187 ~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d-~ 265 (395)
T 3mav_A 187 TLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVD-N 265 (395)
T ss_dssp HHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTT-C
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch-h
Confidence 3578999988874211 125666655555555544 332222 22 22222 1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhH----------HHHHhcCCCCCCHHhHHhcCCChHh---hhh--ccCCHH----H
Q 036368 238 SSAQSIYNGALNLGVGNQLTNILRDV----------GEDASRGRVYLPQDELAQFGLCDKD---VFA--RKVTDN----W 298 (378)
Q Consensus 238 ~~~~~~~~~A~~LG~AlQLtNiLRDl----------~eD~~~GR~YLP~d~L~~~Gvs~ed---l~~--~~~~~~----~ 298 (378)
...+.+.+.+.++|.|+|+.+=+-|+ +.|+..|++-+|.=..-+.. ++++ |.. +..++. +
T Consensus 266 ~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~p~i~al~~~-~~~~r~~L~~~~~~~d~~~~~~v 344 (395)
T 3mav_A 266 LIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELC-SEPDKIKIVKNYGKNNLACVKVI 344 (395)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTTTTCCCHHHHHHHHHS-CHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCCchHHHHHHHHhC-CHHHHHHHHHHhCCCCHHHHHHH
Confidence 12345778999999999999888886 35777888888865433221 2221 111 222222 2
Q ss_pred HHHH------HHHHHHHHHHHHHHHHhhhccCcc
Q 036368 299 REFM------KEQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 299 ~~~~------~~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
+.++ ....+.++.+.+++...+..+|..
T Consensus 345 ~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~ 378 (395)
T 3mav_A 345 DSLYEQYKIRKHYESYEKAQKAKILSAINELHHE 378 (395)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCCH
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 2222 223345667777777777777753
No 47
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=89.53 E-value=2.2 Score=40.33 Aligned_cols=124 Identities=17% Similarity=0.145 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 036368 189 FRDMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIA-PDSSSSAQSIYNGALNLGVGNQLTNILRDVGED 266 (378)
Q Consensus 189 l~~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl~eD 266 (378)
+.+|+.|...|+... .-.|.+++..-.+.-.|++..+.+.+-.+- ..+....+.+.+.+.++|.|+|+.+=+-|+-.|
T Consensus 144 ~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 223 (291)
T 3npk_A 144 LNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTS 223 (291)
T ss_dssp TTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 346889999998643 346888888877777888877766643221 111111245778999999999999988888665
Q ss_pred H-hcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 036368 267 A-SRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 267 ~-~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
- ..|+-. |. | .|+.+=-+.-.++.--..++.++++|...+..++..
T Consensus 224 ~~~~GK~~---------~~---d--~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~ 270 (291)
T 3npk_A 224 QEQSGKPT---------NN---D--IHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEK 270 (291)
T ss_dssp ----------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHCCcc---------ch---h--cCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhchh
Confidence 4 233321 11 1 333333333344445567788888888888777654
No 48
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=88.57 E-value=22 Score=36.34 Aligned_cols=183 Identities=11% Similarity=0.079 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHcC----CCC--cHHHHHHHHHHHhC--------CCC
Q 036368 120 ERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFYG----RPY--DMLDAALTDTVFKF--------PLD 185 (378)
Q Consensus 120 ~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~g----~p~--~pv~~aL~~~v~~~--------~l~ 185 (378)
..|-.+.-+-+|.-.+||+-|.... ...++.+-+.+++...+ -|. .++..+|.+++.+. +..
T Consensus 280 ~~Rl~~aK~~~litviDD~fD~~gt----~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~ 355 (543)
T 2ong_A 280 SARIMMGKVNALITVIDDIYDVYGT----LEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVN 355 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSC----HHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3355555577777889999997532 33466566666654322 132 35666666654432 211
Q ss_pred -----hHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhH------HHHHHHHH
Q 036368 186 -----IKPFRDMIEGMRMDT---RKFRYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSI------YNGALNLG 251 (378)
Q Consensus 186 -----~~~l~~lieg~~~DL---~~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~------~~~A~~LG 251 (378)
++.+.++++++.... .....+|++|.......+.|.--.++...++..+... .+.+ -......+
T Consensus 356 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t--~e~~e~~~~~p~i~~~~~ 433 (543)
T 2ong_A 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFT--KETVDSLYKYHDLVRWSS 433 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCC--HHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCC--HHHHHHhcccHHHHHHHH
Confidence 345677777776543 3445689999988888887765555555544333211 1111 12233344
Q ss_pred HHHHHHHHHHhHHHHHhcCCCC-CCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 036368 252 VGNQLTNILRDVGEDASRGRVY-LPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAE 317 (378)
Q Consensus 252 ~AlQLtNiLRDl~eD~~~GR~Y-LP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~ 317 (378)
....|.|=|........+|-+- .=.-.|.++|+|.++ ..+-+..+++.+.+.+++..
T Consensus 434 ~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~ee---------A~~~i~~~ie~~wk~ln~e~ 491 (543)
T 2ong_A 434 FVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAE---------ARKHVKWLIAEVWKKMNAER 491 (543)
T ss_dssp HHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHh
Confidence 4445556566666666777641 113467888999774 33456777888877777743
No 49
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=87.89 E-value=3 Score=39.79 Aligned_cols=121 Identities=15% Similarity=0.029 Sum_probs=74.2
Q ss_pred HHHHHHHHhhcCCC-CCCCHHHHHHHHHHhhhHHHHHHHhhhCcC-CCCCCch-hhHHHHHHHHHHHHHHHHHHHhHHHH
Q 036368 190 RDMIEGMRMDTRKF-RYEDFQELYLYCYYVAGTVGLMSVPVMGIA-PDSSSSA-QSIYNGALNLGVGNQLTNILRDVGED 266 (378)
Q Consensus 190 ~~lieg~~~DL~~~-~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~-~~~~~~~-~~~~~~A~~LG~AlQLtNiLRDl~eD 266 (378)
..|+.|...|+... .-.|++++..-.++-.|.+..+.+.+..+- ..+.... +.+...+.++|.|+|+.+=+-|+--|
T Consensus 159 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 238 (311)
T 3llw_A 159 KGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQD 238 (311)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 46889999998753 345888888777777777776666543221 1111112 45778999999999999988888655
Q ss_pred H-hcCCCCCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 036368 267 A-SRGRVYLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLD 324 (378)
Q Consensus 267 ~-~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp 324 (378)
- ..|+ +..+ ..|+.+=-+.-.++.--..++.++++|.+.+..++
T Consensus 239 ~~~~GK-------------~~g~-~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~ 283 (311)
T 3llw_A 239 EEESGK-------------TTHL-DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALK 283 (311)
T ss_dssp --------------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hHHHCc-------------cccc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3 1222 1111 33444433334455556778888888888887754
No 50
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=87.21 E-value=1.7 Score=40.65 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCCCC-CCCHHHHHHHHHHhhhHHHHHHHhhhCcC-CCCCCchhhHHHHHHHHHHHHHHHH
Q 036368 190 RDMIEGMRMDTRKFR-YEDFQELYLYCYYVAGTVGLMSVPVMGIA-PDSSSSAQSIYNGALNLGVGNQLTN 258 (378)
Q Consensus 190 ~~lieg~~~DL~~~~-~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtN 258 (378)
.+|+.|...|+.... ..|++++..-++.-.|++..+++.+..+- +.+....+.+.+.+.++|.|+|+.+
T Consensus 149 ~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~D 219 (274)
T 3kra_B 149 EGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMME 219 (274)
T ss_dssp TTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999997543 57888888777777788877776653321 1111112457789999999999954
No 51
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=86.28 E-value=32 Score=35.28 Aligned_cols=190 Identities=12% Similarity=0.094 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhC--------CCC
Q 036368 120 ERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFY----GRPYD--MLDAALTDTVFKF--------PLD 185 (378)
Q Consensus 120 ~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~----g~p~~--pv~~aL~~~v~~~--------~l~ 185 (378)
..|..+.-+-++.-.+||+-|... +...|+-+-+.+++... .-|.. ++..+|.+++.+. +..
T Consensus 289 ~~R~~~aK~~~l~tviDD~yD~yg----t~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~ 364 (555)
T 3n0f_A 289 DCRNSVAKMFSFVTIIDDIYDVYG----TLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGEN 364 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHhccccC----CHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 347777778888899999999643 23456666666665422 22322 3555665544322 222
Q ss_pred -----hHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHHH-------HHHHH
Q 036368 186 -----IKPFRDMIEGMRMDT---RKFRYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYN-------GALNL 250 (378)
Q Consensus 186 -----~~~l~~lieg~~~DL---~~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~~-------~A~~L 250 (378)
++.+.+++.|+.... .....+|++|......-+.|..-.++...++..+.. + +++.+ .....
T Consensus 365 ~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~l--t-~e~~e~~~~~p~i~~~~ 441 (555)
T 3n0f_A 365 ILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNI--K-KEEIENLQKYHDIISRP 441 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSC--C-HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCC--C-HHHHHhcccchHHHHHH
Confidence 245667788776543 234578999999998887776444444444322221 1 22222 22333
Q ss_pred HHHHHHHHHHHhHHHHHhcCCCC-CCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 036368 251 GVGNQLTNILRDVGEDASRGRVY-LPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDK 325 (378)
Q Consensus 251 G~AlQLtNiLRDl~eD~~~GR~Y-LP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~ 325 (378)
+....|.|=|........+|-+- .=.-.|.++|+|.++ ..+-+..+++.+.+-+++..-....+|.
T Consensus 442 ~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~e~l~~~~~p~ 508 (555)
T 3n0f_A 442 SHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEEL---------ATESVMNLIDETWKKMNKEKLGGSLFAK 508 (555)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHHSCCSSCH
T ss_pred HHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 33344444444444444566541 112367788999874 3445677777777766654322233444
No 52
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=85.98 E-value=23 Score=36.45 Aligned_cols=180 Identities=12% Similarity=0.086 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhC--------CCC
Q 036368 120 ERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFY----GRPYD--MLDAALTDTVFKF--------PLD 185 (378)
Q Consensus 120 ~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~----g~p~~--pv~~aL~~~v~~~--------~l~ 185 (378)
..|..+.-+-++.-.+||+-|... +...|+-+-+.++++.. .-|.. ++..+|.+++.+. +..
T Consensus 291 ~~R~~~aK~~~l~tviDD~yD~yg----TleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~ 366 (554)
T 3g4d_A 291 LGRKMLTKVIAMASIVDDTYDSYA----TYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQY 366 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSC----CHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC----CHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 347777777788889999999643 34556666677776432 22433 4566666554322 211
Q ss_pred -----hHHHHHHHHHHHhhcC---CCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHHHHHH---HHHH-H
Q 036368 186 -----IKPFRDMIEGMRMDTR---KFRYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGAL---NLGV-G 253 (378)
Q Consensus 186 -----~~~l~~lieg~~~DL~---~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~~~A~---~LG~-A 253 (378)
++.+.++++|+..... ....+|++|......-++|..-.++...+|..+.. + +++.+... .+-. +
T Consensus 367 ~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~l--t-~e~~e~~~~~p~i~~~~ 443 (554)
T 3g4d_A 367 RVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIV--T-PETFKWAASDPKIIQAS 443 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTS--C-HHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCC--C-HHHHHhccccHHHHHHH
Confidence 2456778888866543 34578999998888888887655555566654322 1 22333221 1222 2
Q ss_pred HHHHHHHHhHHHH---HhcCCCCCCH---HhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 036368 254 NQLTNILRDVGED---ASRGRVYLPQ---DELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAE 317 (378)
Q Consensus 254 lQLtNiLRDl~eD---~~~GR~YLP~---d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~ 317 (378)
.-++.++-|+.-. ..+|- ++. -.|.++|+|.++ ..+-+..+++.+.+-+++..
T Consensus 444 ~~I~RL~NDI~S~k~E~~rG~--van~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~e~ 502 (554)
T 3g4d_A 444 TIICRFMDDVAEHKFKHRRED--DCSAIECYMEEYGVTAQE---------AYDVFNKHVESAWKDLNQEF 502 (554)
T ss_dssp HHHHHHHHHHHHHCC--------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhhhccCC--ccHHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 2233444555543 33443 333 357788999874 34456777777777666543
No 53
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=85.64 E-value=35 Score=35.03 Aligned_cols=192 Identities=9% Similarity=0.063 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhC--------CCC
Q 036368 120 ERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFY----GRPYD--MLDAALTDTVFKF--------PLD 185 (378)
Q Consensus 120 ~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~----g~p~~--pv~~aL~~~v~~~--------~l~ 185 (378)
..|..+.-+-++.-.+||+-|... +...|+-+-+.++++.. .-|.. ++..+|.+++.+. +..
T Consensus 287 ~~R~~~aK~~~l~tviDD~yD~yg----TleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~ 362 (550)
T 3m00_A 287 QARVMLVKTISMISIVDDTFDAYG----TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 362 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHHHHHHHHHHHHHHHHHccccC----CHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 447777778888889999999643 34556666677776432 22322 3556665544322 211
Q ss_pred -----hHHHHHHHHHHHhhcC---CCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHHHH-------HHHH
Q 036368 186 -----IKPFRDMIEGMRMDTR---KFRYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNG-------ALNL 250 (378)
Q Consensus 186 -----~~~l~~lieg~~~DL~---~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~~~-------A~~L 250 (378)
++.+.+++.|+..... ....+|++|......-++|..-.++...+|. +.. + +++.+. ....
T Consensus 363 ~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~l--t-~e~~e~~~~~p~i~~~~ 438 (550)
T 3m00_A 363 IVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSA--T-EQDFEWLSKNPKILEAS 438 (550)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTC--C-HHHHHHHHTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCC--c-HHHHHhhcccHHHHHHH
Confidence 2456778888866543 2346899999999888888765555566775 211 1 222222 2333
Q ss_pred HHHHHHHHHHHhHHHHHhcCCC-CCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCC
Q 036368 251 GVGNQLTNILRDVGEDASRGRV-YLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKDSR 328 (378)
Q Consensus 251 G~AlQLtNiLRDl~eD~~~GR~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~~r 328 (378)
+.-..|.|=|........+|-+ =.=.-.|.++|+|.++ ..+-+..+++.+.+-+++..-....+|..+.
T Consensus 439 ~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~ 508 (550)
T 3m00_A 439 VIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKE---------AMAKFQNMAETAWKDINEGLLRPTPVSTEFL 508 (550)
T ss_dssp HHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHTSSSCSSCGGGT
T ss_pred hhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 3344444444444455567754 1123367888999874 3445677777777766654322234666554
No 54
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=85.39 E-value=17 Score=37.50 Aligned_cols=188 Identities=15% Similarity=0.109 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHcC----CCC--cHHHHHHHHHHHhC--------CCC--
Q 036368 122 QKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFYG----RPY--DMLDAALTDTVFKF--------PLD-- 185 (378)
Q Consensus 122 R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~g----~p~--~pv~~aL~~~v~~~--------~l~-- 185 (378)
|-.+.-+.+|.-.+||+-|... +...|+.+-+.++++..+ -|. .++..+|.+++.+. +..
T Consensus 309 Rl~~aK~~~litviDD~fD~yg----T~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~ 384 (569)
T 2j5c_A 309 RIMLTKINALVTTIDDVFDIYG----TLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDST 384 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 5545556777788999999754 234466566666654321 231 34566666554432 111
Q ss_pred ---hHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHH-------HHHHHHHH
Q 036368 186 ---IKPFRDMIEGMRMDT---RKFRYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIY-------NGALNLGV 252 (378)
Q Consensus 186 ---~~~l~~lieg~~~DL---~~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~-------~~A~~LG~ 252 (378)
++.+.++++++.... .....+|++|.......+.|.--.++...++..+.. + +++. ......+.
T Consensus 385 ~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~l--t-~e~~e~l~~~p~i~~~~~~ 461 (569)
T 2j5c_A 385 PYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSI--E-EEAAESMHKYHDIVRASCT 461 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSC--C-HHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCC--C-HHHHHHhhccHHHHHHHHH
Confidence 345667777776543 334567999988888888775555555555443322 1 1111 12233333
Q ss_pred HHHHHHHHHhHHHHHhcCCCC-CCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 036368 253 GNQLTNILRDVGEDASRGRVY-LPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 253 AlQLtNiLRDl~eD~~~GR~Y-LP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
...|.|=|........+|-+- .=.-.|.++|+|.++ ..+-+..+++.+.+.+++..-. ..+|..
T Consensus 462 i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~ee---------A~~~i~~~ie~~wk~ln~e~l~-~~vp~~ 526 (569)
T 2j5c_A 462 ILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEE---------AREHVRSLIDQTWKMMNKEMMT-SSFSKY 526 (569)
T ss_dssp HHHHHHHHHC----------CCHHHHC------CCHH---------HHHHHHHHHHHHHHHHHHHHHH-CCSCHH
T ss_pred HHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHhc-cCCCHH
Confidence 333444444444444555431 113456778888763 3345667777777776664322 445553
No 55
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=84.89 E-value=8.1 Score=37.53 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhcCCCC----CCCHHHHHHH-HHHhhhHHHHHHHh---hhCcCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 036368 188 PFRDMIEGMRMDTRKFR----YEDFQELYLY-CYYVAGTVGLMSVP---VMGIAPDSSSSAQSIYNGALNLGVGNQLTNI 259 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~~----~~t~~dL~~Y-~~~vAG~VG~l~~~---ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNi 259 (378)
...++..|...|+.... -.+.++...- -+-||+-...+++. +++....+....+.+...+..+|.|+|+.+=
T Consensus 176 ~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DD 255 (368)
T 2q58_A 176 SIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHND 255 (368)
T ss_dssp HHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578889999986422 2244444333 34445443333332 2321111111134577899999999999988
Q ss_pred HHhH------HHHHhcCCCCCCHHhHHhcCCChHh---hhh--ccCCHHHHHHHH------HHHHHHHHHHHHHHHhhhc
Q 036368 260 LRDV------GEDASRGRVYLPQDELAQFGLCDKD---VFA--RKVTDNWREFMK------EQIKRARTFFNMAEEGASQ 322 (378)
Q Consensus 260 LRDl------~eD~~~GR~YLP~d~L~~~Gvs~ed---l~~--~~~~~~~~~~~~------~l~~~A~~~l~~A~~~~~~ 322 (378)
+-|+ +.|+..|.+-+|.=..-+. .++++ |.+ +...+.++++.. ...+.++..++.+...+..
T Consensus 256 iLD~~~gK~~g~Dl~egK~T~p~i~al~~-~~~~~r~~L~~~~~~~~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~ 334 (368)
T 2q58_A 256 VSDYLFNDSNADDICRFKLTWPLQKSFEI-ADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKD 334 (368)
T ss_dssp HHHHHSCCCSSCTTTSCCCCHHHHSSTTT-CCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhcccCCCCCchHhcCCcHHHHHHHHHh-CCHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 8884 5789999998886432111 12222 111 222233333322 2234567777777777777
Q ss_pred cCcc
Q 036368 323 LDKD 326 (378)
Q Consensus 323 Lp~~ 326 (378)
+|..
T Consensus 335 l~~~ 338 (368)
T 2q58_A 335 ITDD 338 (368)
T ss_dssp CSCH
T ss_pred ccch
Confidence 7754
No 56
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=75.09 E-value=52 Score=30.37 Aligned_cols=191 Identities=13% Similarity=0.024 Sum_probs=100.7
Q ss_pred HHHhcCCH---HHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHcCC--C--CcHHHHHHHHHHHhCC-
Q 036368 112 LGTLLMTE---ERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFYGR--P--YDMLDAALTDTVFKFP- 183 (378)
Q Consensus 112 la~~llP~---~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~g~--p--~~pv~~aL~~~v~~~~- 183 (378)
+++.+.|. ++...+.-+.+|.-.+||+.|... ...+..+.+.+.++..|. | ..|+..+|.++..++.
T Consensus 63 ~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~-----~~e~~~~~~~l~~~~~~~~~p~~~~~~~~al~d~~~e~~~ 137 (320)
T 3bny_A 63 VTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMS-----FEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRA 137 (320)
T ss_dssp HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTTSC-----HHHHHHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHH
T ss_pred hHhhhCCCCCHHHHHHHHHHHHHHHHhhcccccCC-----hhhHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 44555564 444466778888899999999732 223444556666665553 2 3678777776654331
Q ss_pred -CC---hHHHHHHHHHHHh--hcCCCCCCCHHHHHHHHHHhhhHHHHHHHhh--hCcCCCCCCchhhHHHHHHHHHHHHH
Q 036368 184 -LD---IKPFRDMIEGMRM--DTRKFRYEDFQELYLYCYYVAGTVGLMSVPV--MGIAPDSSSSAQSIYNGALNLGVGNQ 255 (378)
Q Consensus 184 -l~---~~~l~~lieg~~~--DL~~~~~~t~~dL~~Y~~~vAG~VG~l~~~i--lg~~~~~~~~~~~~~~~A~~LG~AlQ 255 (378)
.+ .+.++.++..+.. +-....++|++|...+-..+.|.--.+.+-. +|..-+.. ..+.........+....
T Consensus 138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e-~~~~~~~l~~~~~~~~~ 216 (320)
T 3bny_A 138 HDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPS-ELQRVREIDANCSKHLS 216 (320)
T ss_dssp HHHHHHHHTHHHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHH-HHHHTHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHHHH
Confidence 00 1112233332211 2223457899999888888877544333332 44321100 01122334445556666
Q ss_pred HHHHHHhHHHHHhcCC--------C-CCCHHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 036368 256 LTNILRDVGEDASRGR--------V-YLPQDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAE 317 (378)
Q Consensus 256 LtNiLRDl~eD~~~GR--------~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~ 317 (378)
|+|=|-.......+|- + =.-.=++.++|+|.++ ..+.+..+++...+.+.+..
T Consensus 217 L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 217 VVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEA---------AKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHHHHCC-----------CCSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHhhcccccccccccchHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555554 1 2234467788998764 23344555555555455443
No 57
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=74.30 E-value=4.4 Score=37.79 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=42.1
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcC-CCCCCchhhHHHHHHHHHHHHHHH
Q 036368 190 RDMIEGMRMDTRKFRYEDFQELYLYCYYVAGTVGLMSVPVMGIA-PDSSSSAQSIYNGALNLGVGNQLT 257 (378)
Q Consensus 190 ~~lieg~~~DL~~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLt 257 (378)
.+|+.|...|+....-.+.+.++.-+++-.|.+..+.+.+..+- +.+....+.+.+.+.++|.|+|+.
T Consensus 151 ~~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~ 219 (273)
T 3qkc_B 151 EGIVEGQYHELGLNQLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLL 219 (273)
T ss_dssp TTHHHHHHHHTTCCSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999764434555555444555566666666543221 111111345678999999999994
No 58
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=66.58 E-value=77 Score=31.29 Aligned_cols=177 Identities=11% Similarity=-0.022 Sum_probs=88.8
Q ss_pred HHHhcCCHH----HHHHHHHHHHHHHHhhhh-ccCCCC-CcccHHHHHHHHHHHHHH---HcCC-------CCcHHHHHH
Q 036368 112 LGTLLMTEE----RQKAIWAIYVWCRRTDEL-VDGPNA-TYMGSVVLDRWEERLQDI---FYGR-------PYDMLDAAL 175 (378)
Q Consensus 112 la~~llP~~----~R~al~aLYAf~R~~Ddi-vD~~~~-~~~~~~~L~~Wr~~L~~i---~~g~-------p~~pv~~aL 175 (378)
++++..|.. .=..+.-+..|.-..||. .|+... ......++..++..+..+ ..|. +.+|+..+|
T Consensus 162 laa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~~~~g~p~~~~~~~~dp~~~al 241 (433)
T 3v1v_A 162 YMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHSTAEYTPTWQASLAADAPRRAY 241 (433)
T ss_dssp HHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCCCTTTHHHHHHHTTSSHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhcccCCCCccccccCCchHHHHH
Confidence 344455544 333444455566788999 786321 111122333333222211 1121 246788888
Q ss_pred HHHHHhCC--CCh-------HHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHhhhHHHH-HHHhhhCcCCCCCC-chh
Q 036368 176 TDTVFKFP--LDI-------KPFRDMIEGMRMDT---RKFRYEDFQELYLYCYYVAGTVGL-MSVPVMGIAPDSSS-SAQ 241 (378)
Q Consensus 176 ~~~v~~~~--l~~-------~~l~~lieg~~~DL---~~~~~~t~~dL~~Y~~~vAG~VG~-l~~~ilg~~~~~~~-~~~ 241 (378)
.+++.++. .+. +.+.++++++.... ....++|++|...+-..+++.... |+...+|..-.... ...
T Consensus 242 ~d~~~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~sg~~p~~~l~e~~~g~~lp~~v~~~p 321 (433)
T 3v1v_A 242 DSAMGYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPCPTITDTVGGYELPADLHARP 321 (433)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSSSTTTGGGHHHHHTCCCCHHHHTSH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhHHHHHHHHHHHcCCCCCHHHHhCc
Confidence 88876552 232 33445556555443 235688999998887766332211 11222443211000 011
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhcC-CC-CCCHHhHHhcCCChHh
Q 036368 242 SIYNGALNLGVGNQLTNILRDVGEDASRG-RV-YLPQDELAQFGLCDKD 288 (378)
Q Consensus 242 ~~~~~A~~LG~AlQLtNiLRDl~eD~~~G-R~-YLP~d~L~~~Gvs~ed 288 (378)
.+.+.-...+....|+|=|-.......+| .+ =+-.-+|.++|+|.++
T Consensus 322 ~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S~ee 370 (433)
T 3v1v_A 322 DMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLCERD 370 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCCHHH
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCCHHH
Confidence 22233455666667777666666666664 33 3344567889999874
No 59
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=64.64 E-value=1.5e+02 Score=31.60 Aligned_cols=190 Identities=10% Similarity=0.044 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHcC----CCC--cHHHHHHHHHHHhC--------CCC
Q 036368 120 ERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFYG----RPY--DMLDAALTDTVFKF--------PLD 185 (378)
Q Consensus 120 ~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~g----~p~--~pv~~aL~~~v~~~--------~l~ 185 (378)
..|..+.-+-++.-.+||+-|... +.+.|+-+-+.+++.... -|. ..+..+|.+++.+. +..
T Consensus 522 ~~R~~~aK~~~l~tviDD~yD~yg----T~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~ 597 (785)
T 3s9v_A 522 KCREVYTKTSNFTVILDDLYDAHG----SLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRD 597 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCC----CHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 347777777788889999999543 345566666777765322 232 13555665543322 212
Q ss_pred -----hHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHH-------HHHHHH
Q 036368 186 -----IKPFRDMIEGMRMDT---RKFRYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIY-------NGALNL 250 (378)
Q Consensus 186 -----~~~l~~lieg~~~DL---~~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~-------~~A~~L 250 (378)
++.+.+++.++.... .....+|++|.......+.|.--.++..+++..+... +++. +.....
T Consensus 598 ~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt---~e~~e~~~~~~~l~~~~ 674 (785)
T 3s9v_A 598 VLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLT---DEVLSKIDRESRFLQLM 674 (785)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCC---HHHHTTTSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCC---HHHHhcccccHHHHHHH
Confidence 244667787776554 2345789999888887777754444444444432211 1111 122233
Q ss_pred HHHHHHHHHHHhHHHHHhcCCC-CCCHHhHHhc-CCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 036368 251 GVGNQLTNILRDVGEDASRGRV-YLPQDELAQF-GLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKD 326 (378)
Q Consensus 251 G~AlQLtNiLRDl~eD~~~GR~-YLP~d~L~~~-Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~ 326 (378)
+.-..|.|=|........+|-+ -.=.-.|.++ |+|.++ ..+-+..+++.+.+-+++..-... +|..
T Consensus 675 ~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEe---------A~~~i~~~Ie~~wKeln~e~l~~~-~p~~ 742 (785)
T 3s9v_A 675 GLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEE---------ALQHVYSVMENALEELNREFVNNK-IPDI 742 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHH---------HHHHHHHHHHHHHHHHHHHHHHSC-CCHH
T ss_pred HHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHH---------HHHHHHHHHHHHHHHHHHHHhcCC-CCHH
Confidence 3333344444444444556654 1124467888 899874 333466777777666665432223 5554
No 60
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=61.98 E-value=1.7e+02 Score=31.33 Aligned_cols=182 Identities=12% Similarity=0.023 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHc----CCCC--cHHHHHHHHHHHhC--------CCC
Q 036368 120 ERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFY----GRPY--DMLDAALTDTVFKF--------PLD 185 (378)
Q Consensus 120 ~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~----g~p~--~pv~~aL~~~v~~~--------~l~ 185 (378)
..|..+.-+-++.-.+||+-|... +.+.|+-+-+.+++... +-|. ..+..+|.+++.+. +..
T Consensus 550 ~~R~~~aK~~~l~tviDD~yD~yg----T~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~ 625 (817)
T 3sdr_A 550 KCRFLFTKVACLQTVLDDMYDTYG----TLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRE 625 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcccCC----CHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 347777777788889999999743 34456666666665422 2232 23555665544322 222
Q ss_pred -----hHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHhhhHHH-HHHHhhhCcCCCCCCchhhHHHHHH-----HHH
Q 036368 186 -----IKPFRDMIEGMRMDT---RKFRYEDFQELYLYCYYVAGTVG-LMSVPVMGIAPDSSSSAQSIYNGAL-----NLG 251 (378)
Q Consensus 186 -----~~~l~~lieg~~~DL---~~~~~~t~~dL~~Y~~~vAG~VG-~l~~~ilg~~~~~~~~~~~~~~~A~-----~LG 251 (378)
++.+.+++.++.... .....+|++|.......+.|.-- .++..+++..+.. + +++.+... .+-
T Consensus 626 ~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~l--t-~e~~e~~~~~s~p~l~ 702 (817)
T 3sdr_A 626 LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLL--S-QEALEKVDYPGRRVLT 702 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCC--C-HHHHHTTCCTTSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCC--C-HHHHhcccccchHHHH
Confidence 244567777776554 23456899888777777766533 2333333332221 1 22222211 111
Q ss_pred HHHH-HHHHHHhHHH---HHhcCCC-CCCHHhHHhc-CCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 036368 252 VGNQ-LTNILRDVGE---DASRGRV-YLPQDELAQF-GLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAE 317 (378)
Q Consensus 252 ~AlQ-LtNiLRDl~e---D~~~GR~-YLP~d~L~~~-Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~ 317 (378)
.+.. +..++-|+.- ...+|.+ =.=.-.|.++ |+|.++ ..+-+..+++.+.+-+++..
T Consensus 703 ~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~Ee---------A~~~i~~~Ie~~wKeln~e~ 765 (817)
T 3sdr_A 703 ELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEE---------ALDHIYSILEPAVKELTREF 765 (817)
T ss_dssp HHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 1211 2233344443 2334433 1113467888 798874 33446677777776666543
No 61
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=61.60 E-value=1.7e+02 Score=31.13 Aligned_cols=192 Identities=12% Similarity=0.009 Sum_probs=100.6
Q ss_pred hHHHHhcCCH--HHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHcC----CCC--cHHHHHHHHHHHh
Q 036368 110 FYLGTLLMTE--ERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFYG----RPY--DMLDAALTDTVFK 181 (378)
Q Consensus 110 fyla~~llP~--~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~g----~p~--~pv~~aL~~~v~~ 181 (378)
||++.-|-|. ..|..+.-+-++.-.+||+-|... +.+.|+-+-+.+++.... -|. ..+..+|.+++.+
T Consensus 479 Yfw~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yg----T~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~e 554 (764)
T 3p5p_A 479 YFSSATFEPEYSATRIAFTKIGCLQVLFDDMADIFA----TLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEE 554 (764)
T ss_dssp HHHTCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccchHHHHHHHHHHHHHHHHHHHcccCC----CHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHH
Confidence 4444443343 346667777778889999999633 244566666666664322 232 1355555554332
Q ss_pred C--------CCC-----hHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHHH
Q 036368 182 F--------PLD-----IKPFRDMIEGMRMDT---RKFRYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYN 245 (378)
Q Consensus 182 ~--------~l~-----~~~l~~lieg~~~DL---~~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~~ 245 (378)
. +.. ++.+.+++.++.... .....+|++|.......+.|.--.++..+++..+.. + +++.+
T Consensus 555 i~~~~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~l--t-~e~~e 631 (764)
T 3p5p_A 555 VNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELV--K-DDVVE 631 (764)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCC--C-GGGHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCC--c-HHHHh
Confidence 2 212 244567777776554 234568999888887777665323333333332221 1 22222
Q ss_pred HH---HHHHHHH-HHHHHHHhHHH---HHhcCCC-CCCHHhHHhc-CCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHH
Q 036368 246 GA---LNLGVGN-QLTNILRDVGE---DASRGRV-YLPQDELAQF-GLCDKDVFARKVTDNWREFMKEQIKRARTFFNMA 316 (378)
Q Consensus 246 ~A---~~LG~Al-QLtNiLRDl~e---D~~~GR~-YLP~d~L~~~-Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A 316 (378)
.. ..+-.+. -+..++-|+.- ...+|-+ =.=.-.|.++ |+|.++ ..+-+..+++.+.+-+++.
T Consensus 632 ~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEe---------A~~~i~~~Ie~~wKeln~e 702 (764)
T 3p5p_A 632 KVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEED---------AIKHICRVVDRALKEASFE 702 (764)
T ss_dssp HHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 22 1122221 22333344443 3445543 1113467889 799874 3344667777777766654
Q ss_pred H
Q 036368 317 E 317 (378)
Q Consensus 317 ~ 317 (378)
.
T Consensus 703 ~ 703 (764)
T 3p5p_A 703 Y 703 (764)
T ss_dssp H
T ss_pred H
Confidence 3
No 62
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=44.33 E-value=2.2e+02 Score=27.33 Aligned_cols=160 Identities=13% Similarity=0.050 Sum_probs=88.7
Q ss_pred cCCHHHHHHHHHHHHHHHHhhhhccCCCCCcccHHHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhC--CCChHHH---
Q 036368 116 LMTEERQKAIWAIYVWCRRTDELVDGPNATYMGSVVLDRWEERLQDIFYGRP-YDMLDAALTDTVFKF--PLDIKPF--- 189 (378)
Q Consensus 116 llP~~~R~al~aLYAf~R~~DdivD~~~~~~~~~~~L~~Wr~~L~~i~~g~p-~~pv~~aL~~~v~~~--~l~~~~l--- 189 (378)
..+.+....+.-.+.|.=.+||+.|++. ..+..+.+.+- .|.+ .||+..++.+...+. ..++.+.
T Consensus 80 ~a~~e~l~liad~~~~~F~lDD~~d~~~------~~l~~~~~~ll---~G~~~~~Pl~~al~dl~~rl~~~~~p~~~~rf 150 (374)
T 1yyq_A 80 KVSKECMADLSIHYTYTLVLDDSKDDPY------PTMVNYFDDLQ---AGREQAHPWWALVNEHFPNVLRHFGPFCSLNL 150 (374)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCSCSH------HHHTTHHHHHH---HTCCCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccccCcH------HHHHHHHHHHh---cCCCCCChHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3456778888888888889999998753 23444444432 3664 589999888876642 3444443
Q ss_pred ----HHHHHHHHhhcC-CCCCCCHHHHHHHHHHhhhHHHHHHHhh-hCcCCC-CCCchhhHHHHHHHHHHHHHHHHHHHh
Q 036368 190 ----RDMIEGMRMDTR-KFRYEDFQELYLYCYYVAGTVGLMSVPV-MGIAPD-SSSSAQSIYNGALNLGVGNQLTNILRD 262 (378)
Q Consensus 190 ----~~lieg~~~DL~-~~~~~t~~dL~~Y~~~vAG~VG~l~~~i-lg~~~~-~~~~~~~~~~~A~~LG~AlQLtNiLRD 262 (378)
.+.+.|...+.. ...+++.++.-.|-+...|. ++.+... +..... ..............+.. .+++.-|
T Consensus 151 ~~s~~~~~~a~~~Ea~n~~~~p~~~~Y~~~rR~~sG~-~E~~~~~~~P~~~~~e~~~~~~~~~~i~am~~---~i~~~ND 226 (374)
T 1yyq_A 151 IRSTLDFFEGCWIEQYNFGGFPGSHDYPQFLRRMNGL-GHCVGASLWPKEQFNERSLFLEITSAIAQMEN---WMVWVND 226 (374)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCTTCTTHHHHHHHHHHC-HHHHHHTTCCTTTCCTTTTHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhccH-HHHHHHhhccccccchhhcchhHHHHHHHHHH---HHHhhhh
Confidence 455555544432 23345666776777777774 4444332 221110 10001112333444444 5555556
Q ss_pred HHHHH---h--cCCCCCCHHhHHhcCCChHh
Q 036368 263 VGEDA---S--RGRVYLPQDELAQFGLCDKD 288 (378)
Q Consensus 263 l~eD~---~--~GR~YLP~d~L~~~Gvs~ed 288 (378)
|---. . ..+.=+...+....|+|.++
T Consensus 227 IlSf~KE~~~~Gd~~NlV~vl~~~~g~S~~e 257 (374)
T 1yyq_A 227 LMSFYKEFDDERDQISLVKNYVVSDEISLHE 257 (374)
T ss_dssp HHHHHHHTTCSSCCCCHHHHHHHHHTCCHHH
T ss_pred hhccchhhhccCCccchhhhehhcCCCCHHH
Confidence 54433 2 22445567777778888764
No 63
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=41.65 E-value=39 Score=29.38 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhC-CCChHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHhhh
Q 036368 149 SVVLDRWEERLQDIFYGRPYDMLDAALTDTVFKF-PLDIKPFRDMIEGMRMDTRK-FRYEDFQELYLYCYYVAG 220 (378)
Q Consensus 149 ~~~L~~Wr~~L~~i~~g~p~~pv~~aL~~~v~~~-~l~~~~l~~lieg~~~DL~~-~~~~t~~dL~~Y~~~vAG 220 (378)
.-++..|++.|-. .|. .++.+++..| ..+.+.|..+|..-..+... .+....-+|..|+..++.
T Consensus 105 ~h~lE~wRdrLi~--~gd------~al~e~~~~~P~~DrQ~LRqLiR~A~kE~~~~kppka~ReLFqyLr~~~~ 170 (176)
T 2p0t_A 105 FHNLERWRDRLIA--GDD------ADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYIRELDE 170 (176)
T ss_dssp HHHHHHHHHHHHH--SCH------HHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CCH------HHHHHHHHHCchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 3468889998643 232 5666777777 58899999999998887653 566789999999987544
No 64
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=35.51 E-value=15 Score=25.21 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.0
Q ss_pred hcCCCCCCHHhHHhcCCChHhhh
Q 036368 268 SRGRVYLPQDELAQFGLCDKDVF 290 (378)
Q Consensus 268 ~~GR~YLP~d~L~~~Gvs~edl~ 290 (378)
+.|++.||.++.++.|+.+.|-.
T Consensus 10 ~kgqi~IPk~ir~~lgi~~Gd~v 32 (53)
T 2l66_A 10 RNYQVTIPAKVRQKFQIKEGDLV 32 (53)
T ss_dssp SSSCBCCCHHHHHHSCCCTTCEE
T ss_pred CCCEEEeCHHHHHHcCcCCCCEE
Confidence 47999999999999999987643
No 65
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=34.40 E-value=10 Score=26.97 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.1
Q ss_pred hcCCCCCCHHhHHhcCCChHhhh
Q 036368 268 SRGRVYLPQDELAQFGLCDKDVF 290 (378)
Q Consensus 268 ~~GR~YLP~d~L~~~Gvs~edl~ 290 (378)
+.||+.||.++.++.|+.+.|-+
T Consensus 20 ~kGqItIPkeiR~~Lgi~~Gd~l 42 (59)
T 1yfb_A 20 ELGRVVIPIELRRTLGIAEKDAL 42 (59)
T ss_dssp TTCEEECCHHHHHHTTCCTTCEE
T ss_pred CCCEEEeCHHHHHHcCCCCCCEE
Confidence 57999999999999999987654
No 66
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=33.92 E-value=1.2e+02 Score=26.42 Aligned_cols=62 Identities=6% Similarity=-0.037 Sum_probs=43.6
Q ss_pred HHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHC
Q 036368 276 QDELAQFGLCDKDVFARKVTDNWREFMKEQIKRARTFFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEEN 348 (378)
Q Consensus 276 ~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~ 348 (378)
.+.+++.|++++++......+........+...+..-+..+ ..++.....+|..+.+++.+.
T Consensus 90 ~~~~~~~Gi~~~~~~~~~~~p~t~aY~~~l~~~a~~~~~~~-----------~aAl~pc~~~Y~~ig~~l~~~ 151 (214)
T 2qzc_A 90 GKLYSKLDISRDVIVKTGYNLINYAYTRHLYYYANLDWNKF-----------LVAWTPCMFGYSIVGDYVIDS 151 (214)
T ss_dssp HHHHHHTTCCHHHHHHSCCCHHHHHHHHHHHHHHHHCHHHH-----------HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHhhCCCChHHHHHHHHHHHHHhcCHHHH-----------HHHHHHHHHHHHHHHHHHHhC
Confidence 34578899999999888888888888888877664322211 123455567899999888554
No 67
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=24.06 E-value=2.1e+02 Score=25.01 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=44.0
Q ss_pred HHhHHhcCCChHhh-hhccCCHHHHHHHHHHHHHHHH--HHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHCC
Q 036368 276 QDELAQFGLCDKDV-FARKVTDNWREFMKEQIKRART--FFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEEND 349 (378)
Q Consensus 276 ~d~L~~~Gvs~edl-~~~~~~~~~~~~~~~l~~~A~~--~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~~ 349 (378)
.+.+++.|++++++ ......+........+...+.. -+..+.. ++.....+|..+.+++.+.+
T Consensus 87 ~~~~~~~gi~~~~~~~~~~~~p~~~aY~~~l~~~a~~~~~~~~~~a-----------Al~pC~~~Y~~ig~~l~~~~ 152 (229)
T 4fn6_A 87 DILAQIVGESYEEIIKTKVWPPSGDHYIKHMYFQAHSRENAIYTIA-----------AMAPCPYIYAELAKRSQSDH 152 (229)
T ss_dssp HHHHHHHTSCHHHHHHSCCCCHHHHHHHHHHHHHHHHCCSHHHHHH-----------HHTHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHcCCCHHHHhhhcCCCHHHHHHHHHHHHHHhhcCCHHHHHH-----------HHHHHHHHHHHHHHHHHHcC
Confidence 45677899999998 7777888888888887766654 2333221 23345678899999887654
No 68
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=23.54 E-value=28 Score=32.56 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhhhHHHHHHHhhhCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhHH
Q 036368 188 PFRDMIEGMRMDTRKFRYEDFQELYLYCYYVAGTVGLMSVPVMGIAPDSSSSAQSIYNGALNLGVGNQLTNILRDVG 264 (378)
Q Consensus 188 ~l~~lieg~~~DL~~~~~~t~~dL~~Y~~~vAG~VG~l~~~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNiLRDl~ 264 (378)
.+.+|+.|...|+.... .. -++.-.|++..+++.+..+-.+.....+.+.+.+.++|.|+|+.+=+-|+.
T Consensus 141 ~~~~~~~GQ~lDl~~~~----~~---~i~~KTg~Lf~~a~~lGa~lag~~~~~~~l~~~G~~lGlAFQI~DDiLD~~ 210 (285)
T 4fp4_A 141 VAQRLSVGQALDLEGER----DK---AAEFKTAPLIEAALVMPLVILGRRELIETAKKLGTKLGILYQYSDDYSDEN 210 (285)
T ss_dssp HHHHHHHHHHHHHTTCH----HH---HHHHHTHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHhHHHHHhccc----cc---hhhcCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34589999999997532 11 344444555555554422111110123567789999999999977555554
No 69
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=23.32 E-value=2.2e+02 Score=24.78 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=43.4
Q ss_pred HHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHH-HHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHC
Q 036368 276 QDELAQFGLCDKDVFARKVTDNWREFMKEQIKRART-FFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEEN 348 (378)
Q Consensus 276 ~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~-~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~ 348 (378)
.+.+++.|++++++......+.....+..+...+.. -+..+ ..++.....+|..+.+.|.+.
T Consensus 91 ~~~~~~~Gi~~~~~~~~~~~p~~~aY~~~l~~~a~~~~~~~~-----------~aAl~pc~~~Y~~ig~~l~~~ 153 (221)
T 3ibx_A 91 NHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSIKEV-----------AAAVLSCGWSYLVIAQNLSQI 153 (221)
T ss_dssp HHHHHHTTCCHHHHHHCCCCHHHHHHHHHHHHHHHHSCHHHH-----------HHHTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHcCCCHHHHhhccCCHHHHHHHHHHHHHHhcCCHHHH-----------HHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999888888888888887766543 11111 123344567888888888654
No 70
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=21.52 E-value=42 Score=19.94 Aligned_cols=17 Identities=24% Similarity=0.639 Sum_probs=14.7
Q ss_pred cccCccccCCCcccccc
Q 036368 8 AANPCIGVSNDKIMCQK 24 (378)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (378)
+.|||..+.-+-|+|+-
T Consensus 5 ~GKpC~~~~~riPCCG~ 21 (28)
T 1y29_A 5 PGKPCYGATQKIPCCGV 21 (28)
T ss_dssp TTCCCCTTCCSCCBSSC
T ss_pred CCCcccCCccccccccc
Confidence 57999999999999974
No 71
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=21.17 E-value=2.4e+02 Score=25.23 Aligned_cols=64 Identities=8% Similarity=-0.080 Sum_probs=44.1
Q ss_pred HHhHHhcCCChHhh-hhccCCHHHHHHHHHHHHHHHH--HHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHCCC
Q 036368 276 QDELAQFGLCDKDV-FARKVTDNWREFMKEQIKRART--FFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEENDY 350 (378)
Q Consensus 276 ~d~L~~~Gvs~edl-~~~~~~~~~~~~~~~l~~~A~~--~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~~~ 350 (378)
.+.++++|++++++ ......+........|...+.. -+..+. .++.....+|..+.+++.+.+-
T Consensus 106 ~~~~~~~gi~~~~~~~~~~~~p~~~aYt~~ll~~a~~~g~~~~~l-----------aAl~PC~w~Y~eig~~l~~~~~ 172 (248)
T 3no6_A 106 EVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTI-----------AAMAPCPYVYAVIGKRAMEDPK 172 (248)
T ss_dssp HHHHHHTTSCHHHHCCSCCCCHHHHHHHHHHHHHHHHCSSTHHHH-----------HHHTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCCHHHHhhhcCCCHHHHHHHHHHHHHHhcCCCHHHHH-----------HHHHHHHHHHHHHHHHHHhcCC
Confidence 45678899999998 7777788888888887766654 222221 1334456789999998877643
No 72
>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} SCOP: a.132.1.0
Probab=20.36 E-value=3.3e+02 Score=23.72 Aligned_cols=63 Identities=10% Similarity=0.055 Sum_probs=43.7
Q ss_pred HHhHHhcCCChHhhhhccCCHHHHHHHHHHHHHHHH-HHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHCC
Q 036368 276 QDELAQFGLCDKDVFARKVTDNWREFMKEQIKRART-FFNMAEEGASQLDKDSRWPVWSSLLIYREILDAIEEND 349 (378)
Q Consensus 276 ~d~L~~~Gvs~edl~~~~~~~~~~~~~~~l~~~A~~-~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~~ 349 (378)
.+.+++.|++.+++......+........+...+.. -+.. ...++.....+|..+.+.+.+.+
T Consensus 93 ~~~~~~~Gi~~~~~~~~~~~p~~~aY~~~l~~~a~~~~~~~-----------~~aAl~pc~~~Y~~ig~~l~~~~ 156 (226)
T 3mvu_A 93 IGICEASGISQEALFATRERAENLAYTRFVLEAGYSGDLLD-----------LLAALAPCVMGYGEIGKRLTAEA 156 (226)
T ss_dssp HHHHHHTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHSCHHH-----------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHhhCCCCHHHHHHHHHHHHHHhcCCHHH-----------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 456788999999998888888888888877766543 1111 11244555678889988887653
Done!