BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036371
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 19/201 (9%)
Query: 58 DITFRIDGTLVAPADYCVLGQADNW----LSFEG----VSGVSIIGGALDAKGSSLWACK 109
D+T GT V G + W +SF G ++G S G ++D +GS W K
Sbjct: 35 DMTGLKSGTTVTFQGKTTFGYKE-WEGPLISFSGTNININGAS--GHSIDCQGSRWWDSK 91
Query: 110 AS--GTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVI-APGNSP-- 164
S G P + L++ I GL LN+ + IN + + V + + G+S
Sbjct: 92 GSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGG 151
Query: 165 -NTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMN 223
NTD V ST I +K DDC+ I GT N+ TC HG+SIGS+G +
Sbjct: 152 HNTDAFDVGSSTGVYISGANVKNQDDCLAINSGT-NITFTGGTCSGGHGLSIGSVG-GRS 209
Query: 224 DEGVQNVTVIRTVFTGTQNGL 244
D V+ VT+ + + NG+
Sbjct: 210 DNTVKTVTISNSKIVNSDNGV 230
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 95 GGALDAKGSSLWACKAS--GTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHI 152
G +D GS W K + G P ++ +++ G+ N+ + I + +VH+
Sbjct: 77 GAVIDGDGSRWWDSKGTNGGKTKPKFMYIHDVEDSTFKGINIKNTPVQAISVQ-ATNVHL 135
Query: 153 EGVTVI-APGNS---PNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCG 208
T+ + G+ NTDG + ST I T+K DDCI I G +++ TC
Sbjct: 136 NDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGGTCS 194
Query: 209 PAHGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGL 244
HG+SIGS+G +D V+NVT+ + + + NG+
Sbjct: 195 GGHGLSIGSVGG-RDDNTVKNVTISDSTVSNSANGV 229
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 65/161 (40%), Gaps = 16/161 (9%)
Query: 95 GGALDAKGSSLWACKASGT------NCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCK 148
G L K S W A N P + + +N + + +NS FH+V +
Sbjct: 124 GVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGD 183
Query: 149 DVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIG-----PGTKNLWIE 203
T+ P + NTDGI S N I I TGDD + I T+N+ I
Sbjct: 184 GFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISIL 243
Query: 204 RVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGL 244
G HG+SIGS GV NVTV GT NGL
Sbjct: 244 HNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGL 279
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 83 LSFEGVSGVSIIGGALDAKGSSLWACKAS--GTNCPDGATLYQLQNIRINGLLSLNSQMF 140
L+ G SG SI G GS W + G P + L N I+GL +NS +
Sbjct: 74 LTITGASGHSING-----DGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQ 128
Query: 141 HIVINGCKDVHIEGVTVI-APGNS---PNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG 196
+ G + ++ +T+ + G+ NTD + ST I T+ DDC+ + G
Sbjct: 129 VFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG 188
Query: 197 TKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGL 244
+N++ C HG+SIGS+G +D V+NVT + + + NG+
Sbjct: 189 -ENIYFSGGYCSGGHGLSIGSVGG-RSDNTVKNVTFVDSTIINSDNGV 234
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 25/166 (15%)
Query: 89 SGVSIIGGA--LDAKGSSLWACKAS--GTNCPDGATLYQLQNIRINGLLS----LNSQMF 140
+G++ +G D G+ W K + GT+ P + I+ +G LNS
Sbjct: 66 TGINFVGADHIFDGNGALYWDGKGTNNGTHKP-----HPFLKIKGSGTYKKFEVLNSPAQ 120
Query: 141 HIVINGCKDVHI--EGVTVIA-PGNSPN----TDGIHVQLSTNAKIMNCTIKTGDDCIPI 193
I + G D H+ +G+TV G++ N TDG V + N I NC +K DDCI I
Sbjct: 121 AISV-GPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDVS-ANNVTIQNCIVKNQDDCIAI 178
Query: 194 GPGTKNLWIERVTCGPAHGISIGSL--GKDMNDEGVQNVTVIRTVF 237
G N+ E C HGISIGS+ GK +++ ++ TV R+++
Sbjct: 179 NDG-NNIRFENNQCSGGHGISIGSIATGKHVSNVVIKGNTVTRSMY 223
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 78 QADNW------LSFEGVSGVSIIGGALDAKGSSLWACK-ASGTNCPDGATLYQLQNIRIN 130
Q + W +S E ++ G ++ G+ W K SG P + L + I
Sbjct: 81 QYEEWAGPLISMSGEHITVTGASGHLINCDGARWWDGKGTSGKKKPKFFYAHGLDSSSIT 140
Query: 131 GLLSLNSQMFHIVINGCKDVHIEGVTVI-APGNSP---NTDGIHVQLSTNAKIMNCTIKT 186
GL N+ + + D+ VT+ A G++ NTD V S I+ +
Sbjct: 141 GLNIKNTPLMAFSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHN 199
Query: 187 GDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGL 244
DDC+ + G +N+W TC HG+SIGS+G D ++ V+NVT+ + + ++N +
Sbjct: 200 QDDCLAVNSG-ENIWFTGGTCIGGHGLSIGSVG-DRSNNVVKNVTIEHSTVSNSENAV 255
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 121 LYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIM 180
L + + ++ ++ +++ FH ++ C D + + I GN DGI V +N +
Sbjct: 132 LTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNM-AIRGGNEGGLDGIDV-WGSNIWVH 189
Query: 181 NCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGT 240
+ + D+C+ + N+ +E + C + G ++GSLG D + + V R V+T +
Sbjct: 190 DVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTDVTDI----VYRNVYTWS 245
Query: 241 QNGL 244
N +
Sbjct: 246 SNQM 249
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 85/206 (41%), Gaps = 24/206 (11%)
Query: 60 TFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSII-----GGALDAKGSSLWACKASGTN 114
+ + D T+ ADN + +SG +I G +D G + W K S +N
Sbjct: 38 SLQNDSTVTFKGTTTFATTADNDFNPIVISGSNITITGASGHVIDGNGQAYWDGKGSNSN 97
Query: 115 C---PDGATLYQLQ--NIRINGLLSLNSQMFHIVINGCKDVHIEGVTVI-APGNSPN--- 165
PD + Q N +I L N + I G + I G+ + G+ PN
Sbjct: 98 SNQKPDHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKS 157
Query: 166 --------TDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGS 217
TDG + S + + N + DDC+ + GT N+ + + C HG+SIGS
Sbjct: 158 GSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSGT-NIVVSNMYCSGGHGLSIGS 216
Query: 218 LGKDMNDEGVQNVTVIRTVFTGTQNG 243
+G +D V V + + +QNG
Sbjct: 217 VGG-KSDNVVDGVQFLSSQVVNSQNG 241
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 116 PDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLST 175
P Y+ +N+ + G+ +NS M+ I ++V I + + + G PN DGI +
Sbjct: 190 PSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTG--PNNDGIDPESCK 247
Query: 176 NAKIMNCTIKTGDDCIPIGPG 196
I C TGDD + I G
Sbjct: 248 YMLIEKCRFDTGDDSVVIKSG 268
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 120 TLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPG------NSPNTDGIHVQL 173
TL ++N+ + G ++ + FH ++N +E V+A G ++ N DGI
Sbjct: 335 TLRGVENVYLAGF-TVRNPAFHGIMN------LENHNVVANGLIHQTYDANNGDGIEFGN 387
Query: 174 STNAKIMNCTIKTGDDCIPIGPGT 197
S N + N TGDDCI GT
Sbjct: 388 SQNVMVFNNFFDTGDDCINFAAGT 411
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 16/111 (14%)
Query: 93 IIGGALDAKGSSLWACKA-SGTNCPDGATLYQLQ-------NIRINGLLSLNSQ----MF 140
I+GG+LDAKGS W K S N GATL Q N+R+ ++
Sbjct: 103 IMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLGHKNDTKAKDIAPTL 162
Query: 141 HIVINGCKDVHIEGVTVIAPGNSPNTDG---IHVQLSTNAKIMNCTIKTGD 188
+ + ++V IE V + P NS G + ++ N ++M + + D
Sbjct: 163 RLYVGKKQEVEIEKV-IFHPDNSTVDIGLIKLKQKVPVNERVMPICLPSKD 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,410,441
Number of Sequences: 62578
Number of extensions: 307200
Number of successful extensions: 847
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 13
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)