Query 036371
Match_columns 245
No_of_seqs 143 out of 1268
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 12:01:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 6.8E-62 1.5E-66 423.3 27.9 244 1-245 28-274 (394)
2 PLN02218 polygalacturonase ADP 100.0 6.4E-61 1.4E-65 421.6 28.5 244 1-245 68-321 (431)
3 PLN02793 Probable polygalactur 100.0 3.7E-60 8.1E-65 418.5 28.6 244 1-245 53-306 (443)
4 PLN02188 polygalacturonase/gly 100.0 1.8E-58 3.9E-63 403.6 28.9 242 1-245 37-284 (404)
5 PLN03003 Probable polygalactur 100.0 1.5E-58 3.2E-63 405.6 27.2 241 1-245 24-267 (456)
6 PLN03010 polygalacturonase 100.0 2.6E-57 5.5E-62 395.5 28.2 235 1-245 47-286 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 9.2E-44 2E-48 306.1 16.9 216 28-245 1-221 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 5.8E-40 1.3E-44 292.1 23.5 234 1-245 83-374 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 100.0 7.2E-28 1.6E-32 208.6 20.6 217 1-244 38-311 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 3.9E-25 8.4E-30 180.8 19.8 211 1-244 2-224 (225)
11 TIGR03805 beta_helix_1 paralle 99.8 1.4E-16 3E-21 136.5 20.8 190 20-240 1-203 (314)
12 PLN02793 Probable polygalactur 99.7 2.7E-15 5.9E-20 133.4 20.5 166 58-245 144-335 (443)
13 PLN02218 polygalacturonase ADP 99.7 5.1E-15 1.1E-19 131.1 20.4 143 82-245 194-350 (431)
14 PLN03003 Probable polygalactur 99.7 1E-14 2.2E-19 129.2 20.4 166 58-245 114-296 (456)
15 PLN02188 polygalacturonase/gly 99.7 2.1E-14 4.6E-19 126.4 20.4 167 58-244 123-314 (404)
16 PF03718 Glyco_hydro_49: Glyco 99.7 2.1E-14 4.6E-19 126.4 20.1 183 33-240 232-441 (582)
17 PLN02155 polygalacturonase 99.6 6.5E-14 1.4E-18 122.8 19.3 145 81-245 146-304 (394)
18 PLN03010 polygalacturonase 99.6 1.3E-13 2.8E-18 121.3 20.1 162 58-245 140-315 (409)
19 PF00295 Glyco_hydro_28: Glyco 99.6 4.5E-14 9.7E-19 121.9 15.3 143 80-244 92-249 (326)
20 TIGR03805 beta_helix_1 paralle 99.4 2.2E-11 4.7E-16 104.5 14.8 141 83-244 27-177 (314)
21 COG5434 PGU1 Endopygalactoruna 99.2 3.6E-10 7.9E-15 101.9 13.2 146 81-241 239-399 (542)
22 PF12541 DUF3737: Protein of u 99.2 3.9E-10 8.5E-15 91.6 11.4 141 88-242 57-227 (277)
23 PF05048 NosD: Periplasmic cop 98.8 2.3E-07 5.1E-12 76.6 14.0 79 124-209 65-143 (236)
24 PF07602 DUF1565: Protein of u 98.8 1.1E-06 2.4E-11 72.2 17.6 159 16-215 14-194 (246)
25 PF13229 Beta_helix: Right han 98.7 2.4E-07 5.3E-12 70.9 10.1 135 83-244 3-142 (158)
26 PF13229 Beta_helix: Right han 98.6 6.1E-07 1.3E-11 68.6 11.0 129 81-237 24-158 (158)
27 PF14592 Chondroitinas_B: Chon 98.6 6.5E-06 1.4E-10 72.4 17.6 45 16-64 3-49 (425)
28 COG3866 PelB Pectate lyase [Ca 98.6 1.9E-06 4.2E-11 71.6 13.2 118 124-241 100-230 (345)
29 smart00656 Amb_all Amb_all dom 98.6 1.4E-06 3.1E-11 69.5 11.9 98 142-240 34-144 (190)
30 PF05048 NosD: Periplasmic cop 98.5 6.6E-06 1.4E-10 67.9 15.7 105 124-244 43-149 (236)
31 COG3420 NosD Nitrous oxidase a 98.5 1.1E-05 2.3E-10 68.2 16.4 106 80-195 69-179 (408)
32 TIGR03808 RR_plus_rpt_1 twin-a 98.5 1.4E-06 3E-11 76.8 11.6 50 122-175 112-167 (455)
33 PLN02480 Probable pectinestera 98.5 0.00012 2.6E-09 63.4 22.0 203 10-239 54-276 (343)
34 PF00544 Pec_lyase_C: Pectate 98.3 2.6E-06 5.7E-11 68.5 8.4 77 164-241 73-159 (200)
35 PRK10531 acyl-CoA thioesterase 98.3 0.00016 3.4E-09 63.9 19.8 53 9-65 87-141 (422)
36 COG3866 PelB Pectate lyase [Ca 98.2 0.00015 3.2E-09 60.6 16.3 162 60-244 78-280 (345)
37 PF03718 Glyco_hydro_49: Glyco 98.1 0.0002 4.4E-09 64.3 15.2 191 32-244 255-493 (582)
38 PLN02665 pectinesterase family 98.1 0.0033 7.1E-08 55.0 22.3 206 10-239 74-297 (366)
39 PLN02176 putative pectinestera 98.1 0.0034 7.5E-08 54.3 22.1 206 10-239 45-270 (340)
40 PLN02682 pectinesterase family 98.1 0.00074 1.6E-08 58.9 18.0 48 15-65 80-128 (369)
41 PLN02773 pectinesterase 98.1 0.0021 4.5E-08 55.2 20.5 52 10-65 11-63 (317)
42 PLN02170 probable pectinestera 98.0 0.0015 3.3E-08 59.5 19.2 52 10-65 231-284 (529)
43 PF12541 DUF3737: Protein of u 98.0 9.6E-05 2.1E-09 60.6 10.4 113 85-209 94-224 (277)
44 PLN02708 Probable pectinestera 97.9 0.0015 3.2E-08 60.3 18.9 51 11-65 248-300 (553)
45 PLN02916 pectinesterase family 97.9 0.0019 4E-08 58.6 18.4 52 10-65 193-248 (502)
46 PLN02634 probable pectinestera 97.9 0.0033 7.2E-08 54.7 19.1 52 10-65 62-114 (359)
47 PLN02713 Probable pectinestera 97.9 0.0016 3.4E-08 60.2 17.8 52 10-65 256-311 (566)
48 PLN02432 putative pectinestera 97.9 0.01 2.2E-07 50.4 21.1 52 10-65 17-69 (293)
49 PLN03043 Probable pectinestera 97.9 0.0024 5.2E-08 58.7 18.5 134 10-187 229-374 (538)
50 PLN02671 pectinesterase 97.8 0.0041 8.9E-08 54.1 18.8 52 10-65 65-117 (359)
51 PLN02484 probable pectinestera 97.8 0.0047 1E-07 57.4 20.3 52 11-65 279-331 (587)
52 PF12218 End_N_terminal: N ter 97.8 2.2E-05 4.8E-10 49.3 3.5 41 8-51 1-41 (67)
53 PF01696 Adeno_E1B_55K: Adenov 97.8 0.0043 9.4E-08 54.1 18.6 144 19-213 56-204 (386)
54 PLN02933 Probable pectinestera 97.8 0.0056 1.2E-07 56.0 20.1 47 16-65 229-276 (530)
55 PLN02416 probable pectinestera 97.8 0.0031 6.8E-08 58.0 18.6 152 10-208 236-396 (541)
56 PF01095 Pectinesterase: Pecti 97.8 0.0031 6.7E-08 53.9 17.3 48 15-65 10-58 (298)
57 PLN02745 Putative pectinestera 97.8 0.0035 7.7E-08 58.3 18.7 47 16-65 296-343 (596)
58 smart00656 Amb_all Amb_all dom 97.8 0.0017 3.7E-08 51.8 14.7 35 199-240 155-189 (190)
59 PLN02468 putative pectinestera 97.8 0.004 8.6E-08 57.7 18.9 47 16-65 269-316 (565)
60 PLN02313 Pectinesterase/pectin 97.8 0.0043 9.4E-08 57.7 18.9 47 16-65 286-333 (587)
61 PLN02488 probable pectinestera 97.8 0.006 1.3E-07 55.3 19.1 51 11-65 204-255 (509)
62 PLN02201 probable pectinestera 97.7 0.0042 9.2E-08 56.8 18.2 52 10-65 212-264 (520)
63 PLN02197 pectinesterase 97.7 0.0049 1.1E-07 57.2 18.7 47 16-65 286-333 (588)
64 PLN02217 probable pectinestera 97.7 0.0062 1.3E-07 57.2 19.2 47 16-65 261-308 (670)
65 PLN02314 pectinesterase 97.7 0.0048 1E-07 57.4 18.2 47 16-65 289-336 (586)
66 PLN02301 pectinesterase/pectin 97.7 0.0065 1.4E-07 55.9 18.9 47 16-65 247-294 (548)
67 PLN02995 Probable pectinestera 97.7 0.0051 1.1E-07 56.6 17.7 51 11-65 230-283 (539)
68 PLN02506 putative pectinestera 97.7 0.0067 1.5E-07 55.8 18.1 51 11-65 239-290 (537)
69 PLN02990 Probable pectinestera 97.6 0.012 2.7E-07 54.5 19.6 52 10-65 265-317 (572)
70 PLN02304 probable pectinestera 97.6 0.0062 1.3E-07 53.3 16.0 52 10-65 81-133 (379)
71 PRK10123 wcaM putative colanic 97.5 0.0024 5.2E-08 53.3 11.8 45 14-69 43-90 (464)
72 PLN02497 probable pectinestera 97.4 0.078 1.7E-06 45.9 21.8 207 9-239 37-263 (331)
73 PF00544 Pec_lyase_C: Pectate 97.3 0.0026 5.7E-08 51.2 9.8 18 142-159 78-95 (200)
74 PF12708 Pectate_lyase_3: Pect 97.2 0.012 2.6E-07 47.5 12.6 101 127-244 94-202 (225)
75 COG4677 PemB Pectin methyleste 96.7 0.042 9.1E-07 46.7 11.7 48 15-65 92-141 (405)
76 PLN02480 Probable pectinestera 96.5 0.37 8.1E-06 42.0 16.9 108 120-240 127-252 (343)
77 COG3420 NosD Nitrous oxidase a 95.9 0.2 4.3E-06 43.1 11.5 57 124-185 128-191 (408)
78 TIGR03804 para_beta_helix para 95.8 0.012 2.7E-07 34.9 3.2 39 142-185 2-40 (44)
79 PF07602 DUF1565: Protein of u 95.8 0.12 2.5E-06 42.9 9.8 95 142-244 91-192 (246)
80 TIGR03804 para_beta_helix para 95.6 0.024 5.2E-07 33.6 3.8 41 168-209 1-41 (44)
81 PF08480 Disaggr_assoc: Disagg 95.2 0.58 1.3E-05 36.7 11.2 114 125-243 2-146 (198)
82 PLN02665 pectinesterase family 93.7 4.7 0.0001 35.6 16.3 107 122-241 151-273 (366)
83 PF08480 Disaggr_assoc: Disagg 93.6 0.86 1.9E-05 35.8 8.9 90 148-241 2-110 (198)
84 PF14592 Chondroitinas_B: Chon 93.4 0.48 1E-05 42.3 8.2 116 124-241 222-364 (425)
85 PF03211 Pectate_lyase: Pectat 92.7 4.6 9.9E-05 32.8 14.8 80 119-204 55-135 (215)
86 PRK10123 wcaM putative colanic 92.7 4.4 9.5E-05 34.3 12.4 11 33-43 71-81 (464)
87 PLN02497 probable pectinestera 91.8 8.2 0.00018 33.6 14.6 107 122-240 112-239 (331)
88 PLN02773 pectinesterase 91.0 4.2 9.1E-05 35.1 10.9 108 122-241 99-213 (317)
89 PLN02698 Probable pectinestera 88.5 10 0.00022 34.9 12.0 79 121-208 266-349 (497)
90 PLN02176 putative pectinestera 87.8 18 0.00039 31.6 14.6 106 123-240 120-246 (340)
91 PLN02432 putative pectinestera 86.6 19 0.00042 30.7 17.9 78 122-208 91-172 (293)
92 PF03211 Pectate_lyase: Pectat 85.8 4.8 0.0001 32.7 7.4 54 148-207 61-115 (215)
93 PLN02708 Probable pectinestera 84.4 10 0.00022 35.5 9.8 108 122-241 327-450 (553)
94 PF01696 Adeno_E1B_55K: Adenov 84.0 30 0.00065 30.7 17.9 171 3-211 46-221 (386)
95 PF01095 Pectinesterase: Pecti 83.1 6.4 0.00014 33.7 7.5 110 121-241 83-203 (298)
96 PLN02506 putative pectinestera 83.1 11 0.00024 35.1 9.5 109 122-240 316-434 (537)
97 PLN02682 pectinesterase family 82.3 24 0.00051 31.3 10.8 107 122-240 160-280 (369)
98 PLN02713 Probable pectinestera 82.2 18 0.00039 33.9 10.6 108 122-241 337-456 (566)
99 PLN02301 pectinesterase/pectin 82.1 12 0.00026 34.9 9.3 106 124-241 322-439 (548)
100 PRK10531 acyl-CoA thioesterase 80.9 22 0.00047 32.0 10.2 112 123-241 204-337 (422)
101 PLN02671 pectinesterase 80.7 19 0.00041 31.7 9.6 106 122-240 151-270 (359)
102 PLN02933 Probable pectinestera 80.6 16 0.00036 33.9 9.6 106 123-240 303-420 (530)
103 PLN02416 probable pectinestera 80.5 14 0.0003 34.5 9.2 64 144-210 313-378 (541)
104 PLN03043 Probable pectinestera 80.3 22 0.00048 33.2 10.4 94 143-240 308-428 (538)
105 PLN02197 pectinesterase 79.8 20 0.00042 33.8 10.0 111 122-241 361-481 (588)
106 PLN02314 pectinesterase 79.5 16 0.00034 34.5 9.3 108 124-241 364-481 (586)
107 PLN02916 pectinesterase family 79.5 21 0.00046 32.9 9.9 107 123-241 275-393 (502)
108 PLN02170 probable pectinestera 79.5 20 0.00043 33.3 9.7 107 122-240 310-427 (529)
109 PLN02468 putative pectinestera 79.3 18 0.00038 34.0 9.5 108 122-241 342-461 (565)
110 PLN02313 Pectinesterase/pectin 79.3 15 0.00033 34.6 9.2 108 124-241 361-478 (587)
111 smart00722 CASH Domain present 79.2 22 0.00047 25.9 11.6 66 124-192 75-144 (146)
112 PLN02201 probable pectinestera 79.2 24 0.00053 32.7 10.2 107 122-240 290-408 (520)
113 PLN02304 probable pectinestera 79.1 35 0.00075 30.3 10.8 107 122-240 159-287 (379)
114 PLN02698 Probable pectinestera 78.2 21 0.00046 32.9 9.5 64 144-210 266-331 (497)
115 PLN02488 probable pectinestera 78.0 26 0.00056 32.3 9.9 108 124-241 283-400 (509)
116 PLN02745 Putative pectinestera 77.8 22 0.00049 33.5 9.7 107 123-241 370-488 (596)
117 PLN02990 Probable pectinestera 76.1 24 0.00051 33.2 9.4 110 122-241 344-463 (572)
118 PLN02484 probable pectinestera 76.0 20 0.00044 33.8 8.9 107 123-241 358-476 (587)
119 PLN02217 probable pectinestera 76.0 20 0.00042 34.4 8.9 110 122-241 334-453 (670)
120 PLN02634 probable pectinestera 76.0 33 0.00072 30.2 9.7 107 122-240 146-266 (359)
121 PLN02995 Probable pectinestera 75.4 24 0.00051 33.0 9.1 109 122-240 309-427 (539)
122 smart00710 PbH1 Parallel beta- 66.8 8.3 0.00018 18.7 2.6 9 177-185 4-12 (26)
123 PF14262 DUF4353: Domain of un 66.4 79 0.0017 26.6 13.2 37 32-69 5-49 (264)
124 smart00722 CASH Domain present 60.6 61 0.0013 23.4 8.1 19 166-184 93-111 (146)
125 PF10162 G8: G8 domain; Inter 51.5 53 0.0012 24.0 5.6 54 32-99 11-65 (125)
126 COG4677 PemB Pectin methyleste 45.1 1E+02 0.0022 26.9 6.8 112 124-242 188-321 (405)
127 KOG1777 Putative Zn-finger pro 40.8 2.9E+02 0.0062 25.3 10.6 183 15-245 33-247 (625)
128 PRK09752 adhesin; Provisional 39.0 4.7E+02 0.01 27.2 12.3 100 142-241 115-235 (1250)
129 PF02741 FTR_C: FTR, proximal 35.4 47 0.001 25.1 3.0 32 14-47 109-142 (150)
130 PHA00672 hypothetical protein 33.3 1.1E+02 0.0023 22.7 4.5 15 34-48 50-64 (152)
131 PF11429 Colicin_D: Colicin D; 30.7 45 0.00097 23.2 2.1 39 4-46 10-49 (92)
132 COG0033 Pgm Phosphoglucomutase 26.3 74 0.0016 28.9 3.2 37 10-47 61-97 (524)
133 cd07990 LPLAT_LCLAT1-like Lyso 26.1 73 0.0016 24.9 3.0 29 15-44 86-116 (193)
134 PF13918 PLDc_3: PLD-like doma 25.3 84 0.0018 24.7 3.1 18 10-27 77-94 (177)
135 PF07986 TBCC: Tubulin binding 24.3 2.8E+02 0.006 20.0 6.9 12 83-94 23-34 (120)
136 COG0098 RpsE Ribosomal protein 22.7 82 0.0018 24.8 2.5 25 14-42 67-91 (181)
137 PRK13301 putative L-aspartate 22.5 88 0.0019 26.4 2.8 23 19-42 101-123 (267)
138 cd06840 PLPDE_III_Bif_AspK_Dap 21.4 1.4E+02 0.003 26.3 4.0 32 16-47 227-258 (368)
139 cd07986 LPLAT_ACT14924-like Ly 21.2 1.2E+02 0.0025 24.3 3.3 27 15-43 83-109 (210)
140 KOG2107 Uncharacterized conser 20.9 66 0.0014 25.0 1.6 14 31-44 121-134 (179)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=6.8e-62 Score=423.35 Aligned_cols=244 Identities=51% Similarity=0.990 Sum_probs=225.0
Q ss_pred CceecccccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCceeEEEeEEeeccCCCCCeEEEECCEEEeeccccccCCCc
Q 036371 1 YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQAD 80 (245)
Q Consensus 1 ~~v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g~l~~~~~~~~~~~~~ 80 (245)
|||++|||+|||++|||+|||+||++||++.+|++|+||+|+|++++|.|.|+||| +++|+++|+|++++++..|....
T Consensus 28 ~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~l~G~l~~~~d~~~~~~~~ 106 (394)
T PLN02155 28 FNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQVAGTVVAPEDYRTFGNSG 106 (394)
T ss_pred EEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEEEeeEEECccccccccccc
Confidence 68999999999999999999999987788889999999999999999999999999 99999999999998888886555
Q ss_pred ceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEE---EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEE
Q 036371 81 NWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ---LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTV 157 (245)
Q Consensus 81 ~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~---~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i 157 (245)
.|+.+.+.+++.|+||+|||+|+.||.....+..++.+|+++. |+|++|++++++|+|.|++++..|++++|++++|
T Consensus 107 ~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I 186 (394)
T PLN02155 107 YWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKL 186 (394)
T ss_pred eeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEE
Confidence 6899999999999999999999999986544344444443333 9999999999999999999999999999999999
Q ss_pred ECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCCceEEEeccCcCCCCCCeEEEEEEeEEE
Q 036371 158 IAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVF 237 (245)
Q Consensus 158 ~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~ni~i~n~~~ 237 (245)
.++.+++|+|||++.+|++|+|+||+|.++||||+++++++||+|+||+|.++||++|||+|++.+.+.|+||+|+||+|
T Consensus 187 ~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~ 266 (394)
T PLN02155 187 VAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVF 266 (394)
T ss_pred ECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEE
Confidence 99998999999999999999999999999999999999999999999999999999999999887678899999999999
Q ss_pred ECCccccC
Q 036371 238 TGTQNGLL 245 (245)
Q Consensus 238 ~~~~~g~~ 245 (245)
.++.+|++
T Consensus 267 ~~t~~Gir 274 (394)
T PLN02155 267 TGSQNGVR 274 (394)
T ss_pred eCCCcEEE
Confidence 99999874
No 2
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=6.4e-61 Score=421.60 Aligned_cols=244 Identities=41% Similarity=0.719 Sum_probs=224.9
Q ss_pred CceecccccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCc-eeEEEeEEeeccCCCCCeEEEECCEEEeeccccccCCC
Q 036371 1 YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKG-RYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQA 79 (245)
Q Consensus 1 ~~v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~~l~l~~~~~s~~~~l~~~g~l~~~~~~~~~~~~ 79 (245)
|||+||||+|||++|||+|||+||++||++.++++|+||+| +|+++++.|+|+||+ +++|+++|+|++++++..|+..
T Consensus 68 ~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s~d~~~y~~~ 146 (431)
T PLN02218 68 VSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSASQKRSDYKDI 146 (431)
T ss_pred EEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeCCChhhcccc
Confidence 68999999999999999999999987888888899999999 699999999999999 9999999999999999988776
Q ss_pred cceEEEcCeeceEEEc---cEEeCCCCcccccccC-C--CCCCCCceEEE---EecEEEEeeEEecCCCeEEEEeCcccE
Q 036371 80 DNWLSFEGVSGVSIIG---GALDAKGSSLWACKAS-G--TNCPDGATLYQ---LQNIRINGLLSLNSQMFHIVINGCKDV 150 (245)
Q Consensus 80 ~~~i~~~~~~nv~I~G---g~idG~g~~~w~~~~~-~--~~~~~~~~~~~---~~nv~i~~v~i~n~~~~~i~~~~~~~i 150 (245)
..|+.+.+.+||+|+| |+|||+|+.||..... + ..+..+|+++. |+|++|++++++|+|.|++++..|+++
T Consensus 147 ~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~~~~~~nV 226 (431)
T PLN02218 147 SKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNV 226 (431)
T ss_pred ccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEEEEceeeE
Confidence 7899999999999999 9999999999974321 1 12335676654 999999999999999999999999999
Q ss_pred EEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCCceEEEeccCcCCCCCCeEEE
Q 036371 151 HIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNV 230 (245)
Q Consensus 151 ~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~ni 230 (245)
+|+|++|.++.++||+||||+.+|+||+|+||+|.+|||||+++++++||+|+||+|.++|||+|||+|.+.....|+||
T Consensus 227 ~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV 306 (431)
T PLN02218 227 QVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGV 306 (431)
T ss_pred EEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987656789999
Q ss_pred EEEeEEEECCccccC
Q 036371 231 TVIRTVFTGTQNGLL 245 (245)
Q Consensus 231 ~i~n~~~~~~~~g~~ 245 (245)
+|+|++|.++.+|++
T Consensus 307 ~v~n~~~~~t~nGvR 321 (431)
T PLN02218 307 TVDGAKLSGTDNGVR 321 (431)
T ss_pred EEEccEEecCCcceE
Confidence 999999999999974
No 3
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=3.7e-60 Score=418.52 Aligned_cols=244 Identities=39% Similarity=0.736 Sum_probs=222.9
Q ss_pred CceecccccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCc-eeEEEeEEeeccCCCCCeEEEECCEEEeeccccccCCC
Q 036371 1 YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKG-RYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQA 79 (245)
Q Consensus 1 ~~v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G-~Y~~~~l~l~~~~~s~~~~l~~~g~l~~~~~~~~~~~~ 79 (245)
|||+||||+|||++|||+|||+||++||++.+|++|+||+| +|+++++.|.|+||| +++|+++|+|+++.++..|+..
T Consensus 53 ~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~w~~~ 131 (443)
T PLN02793 53 LHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDVWKGL 131 (443)
T ss_pred EEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHHccCC
Confidence 68999999999999999999999997888888999999999 599999999999889 9999999999999999999743
Q ss_pred --cceEEEcCeeceEEEc-cEEeCCCCccccccc--C-CCCCCCCceEEE---EecEEEEeeEEecCCCeEEEEeCcccE
Q 036371 80 --DNWLSFEGVSGVSIIG-GALDAKGSSLWACKA--S-GTNCPDGATLYQ---LQNIRINGLLSLNSQMFHIVINGCKDV 150 (245)
Q Consensus 80 --~~~i~~~~~~nv~I~G-g~idG~g~~~w~~~~--~-~~~~~~~~~~~~---~~nv~i~~v~i~n~~~~~i~~~~~~~i 150 (245)
+.|+.+.+++|++|+| |+|||+|+.||.... . ......+|+++. |+|++|++++++|+|.|++++..|+++
T Consensus 132 ~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~nv 211 (443)
T PLN02793 132 NPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRV 211 (443)
T ss_pred CCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEccCcE
Confidence 5799999999999999 999999999996421 1 111223465544 999999999999999999999999999
Q ss_pred EEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCCceEEEeccCcCCCCCCeEEE
Q 036371 151 HIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNV 230 (245)
Q Consensus 151 ~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~ni 230 (245)
+|++++|.++.+++|+||||+.+|++|+|+||+|.++||||+++++++||+|+||+|.++|||+|||+|++...+.|+||
T Consensus 212 ~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV 291 (443)
T PLN02793 212 TISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVRDI 291 (443)
T ss_pred EEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcEEEE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999988766789999
Q ss_pred EEEeEEEECCccccC
Q 036371 231 TVIRTVFTGTQNGLL 245 (245)
Q Consensus 231 ~i~n~~~~~~~~g~~ 245 (245)
+|+||+|.++.+|++
T Consensus 292 ~v~n~~~~~t~~Gir 306 (443)
T PLN02793 292 TVDGAFLSNTDNGVR 306 (443)
T ss_pred EEEccEEeCCCceEE
Confidence 999999999999874
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.8e-58 Score=403.58 Aligned_cols=242 Identities=40% Similarity=0.772 Sum_probs=218.6
Q ss_pred CceecccccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCceeEEEeEEeeccCCCCCeEEEECCEEEeeccccccCCCc
Q 036371 1 YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQAD 80 (245)
Q Consensus 1 ~~v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g~l~~~~~~~~~~~~~ 80 (245)
|||+||||+|||++|||+|||+||++||++.++++|+||+|+|+++++.|+|+|++ ...|.+ +|++++++.+|+...
T Consensus 37 ~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~-~s~v~l--~L~~s~d~~~y~~~~ 113 (404)
T PLN02188 37 FDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTN-VSSLTF--TLKAATDLSRYGSGN 113 (404)
T ss_pred EehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCc-ceeEEE--EEEcCCCHHHCCCcc
Confidence 68999999999999999999999987888888899999999999999999999865 444544 999999999998766
Q ss_pred ceEEEcCeeceEEEc-cEEeCCCCccccccc--CCCCCCCCceEEE---EecEEEEeeEEecCCCeEEEEeCcccEEEEe
Q 036371 81 NWLSFEGVSGVSIIG-GALDAKGSSLWACKA--SGTNCPDGATLYQ---LQNIRINGLLSLNSQMFHIVINGCKDVHIEG 154 (245)
Q Consensus 81 ~~i~~~~~~nv~I~G-g~idG~g~~~w~~~~--~~~~~~~~~~~~~---~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n 154 (245)
.|+.+..++|++|+| |+|||+|+.||.... ....+..+|+++. |+|++|++++++|+|.|++++..|++++|++
T Consensus 114 ~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~ 193 (404)
T PLN02188 114 DWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSG 193 (404)
T ss_pred ceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEEEE
Confidence 789998899999999 999999999997432 1122334565544 9999999999999999999999999999999
Q ss_pred EEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCCceEEEeccCcCCCCCCeEEEEEEe
Q 036371 155 VTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIR 234 (245)
Q Consensus 155 ~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~ni~i~n 234 (245)
++|.++.+++|+|||++.+|++|+|+||+|.++||||+++++++||+|+|++|.++|||+|||+|++...+.++||+|+|
T Consensus 194 v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n 273 (404)
T PLN02188 194 LKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRD 273 (404)
T ss_pred EEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEe
Confidence 99999988999999999999999999999999999999999999999999999999999999999876667899999999
Q ss_pred EEEECCccccC
Q 036371 235 TVFTGTQNGLL 245 (245)
Q Consensus 235 ~~~~~~~~g~~ 245 (245)
|+|.++.+|++
T Consensus 274 ~~~~~t~~Gir 284 (404)
T PLN02188 274 CTFTGTTNGIR 284 (404)
T ss_pred eEEECCCcEEE
Confidence 99999999874
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1.5e-58 Score=405.60 Aligned_cols=241 Identities=44% Similarity=0.775 Sum_probs=217.0
Q ss_pred CceecccccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCce-eEEEeEEeeccCCCCCeEEEECCEEEeeccccccCC-
Q 036371 1 YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGR-YLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQ- 78 (245)
Q Consensus 1 ~~v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~-Y~~~~l~l~~~~~s~~~~l~~~g~l~~~~~~~~~~~- 78 (245)
|||++|||+|||++|||+|||+||++||++.++++|+||+|+ |++++|.|+|+||+..+.++++|+++++.. ..|..
T Consensus 24 fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~-~~w~~~ 102 (456)
T PLN03003 24 LDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK-GNWKGD 102 (456)
T ss_pred EehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-ccccCC
Confidence 689999999999999999999999998988889999999995 899999999988762478888999998764 35653
Q ss_pred CcceEEEcCeeceEEEc-cEEeCCCCcccccccCCCCCCCCceEEEEecEEEEeeEEecCCCeEEEEeCcccEEEEeEEE
Q 036371 79 ADNWLSFEGVSGVSIIG-GALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTV 157 (245)
Q Consensus 79 ~~~~i~~~~~~nv~I~G-g~idG~g~~~w~~~~~~~~~~~~~~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i 157 (245)
...||.+.++++++|+| |+|||+|+.||... ..+|....+..|+|++|++++++|+|.|++++..|++++|++++|
T Consensus 103 ~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~---~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I 179 (456)
T PLN03003 103 KDQWILFTDIEGLVIEGDGEINGQGSSWWEHK---GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRI 179 (456)
T ss_pred CcceEEEEcccceEEeccceEeCCchhhhhcc---cCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEE
Confidence 35799999999999999 99999999999753 123333333349999999999999999999999999999999999
Q ss_pred ECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCCceEEEeccCcCCCCCCeEEEEEEeEEE
Q 036371 158 IAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVF 237 (245)
Q Consensus 158 ~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~ni~i~n~~~ 237 (245)
.++.+++|+||||+.+|++|+|+||.|.++||||+++++++||+|+||+|.++|||+|||+|++.....|+||+|+||+|
T Consensus 180 ~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~ 259 (456)
T PLN03003 180 NAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNF 259 (456)
T ss_pred eCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEE
Confidence 99988999999999999999999999999999999999999999999999999999999999876557799999999999
Q ss_pred ECCccccC
Q 036371 238 TGTQNGLL 245 (245)
Q Consensus 238 ~~~~~g~~ 245 (245)
.++.+|++
T Consensus 260 ~~T~nGvR 267 (456)
T PLN03003 260 RGTMNGAR 267 (456)
T ss_pred ECCCcEEE
Confidence 99999974
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=2.6e-57 Score=395.52 Aligned_cols=235 Identities=44% Similarity=0.832 Sum_probs=214.8
Q ss_pred CceecccccCCCCcchHHHHHHHHHHHhhcCC-CcEEEecCc-eeEEEeEEeeccCCCCCeEEEECCEEEeeccccccCC
Q 036371 1 YNVLRFGAKGNGVADSTQAFAKAWAAACASTE-SATINVPKG-RYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQ 78 (245)
Q Consensus 1 ~~v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~-g~~v~ip~G-~Y~~~~l~l~~~~~s~~~~l~~~g~l~~~~~~~~~~~ 78 (245)
|||+||||+|||++|||+|||+||++||+..+ +++|+|||| +|+++++.|+++||+.+++|+++|+|++++++..|+.
T Consensus 47 ~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~~w~~ 126 (409)
T PLN03010 47 YNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIVAWSN 126 (409)
T ss_pred EeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChhhccC
Confidence 68999999999999999999999998775322 379999999 7999999999988743799999999999999999964
Q ss_pred --CcceEEEcCeeceEEEc-cEEeCCCCcccccccCCCCCCCCceEEEEecEEEEeeEEecCCCeEEEEeCcccEEEEeE
Q 036371 79 --ADNWLSFEGVSGVSIIG-GALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGV 155 (245)
Q Consensus 79 --~~~~i~~~~~~nv~I~G-g~idG~g~~~w~~~~~~~~~~~~~~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~ 155 (245)
...|+.+.+++|+.|+| |+|||+|+.||. ...+..|+|++|++++++|+|.|++++..|++++|+++
T Consensus 127 ~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~----------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i 196 (409)
T PLN03010 127 PKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE----------ALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKI 196 (409)
T ss_pred CCCcceEEEecccccEEeeceEEeCCCccccc----------eEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEE
Confidence 35689999999999999 999999999996 12333499999999999999999999999999999999
Q ss_pred EEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCCceEEEeccCcCCCCCCeEEEEEEeE
Q 036371 156 TVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRT 235 (245)
Q Consensus 156 ~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~ni~i~n~ 235 (245)
+|.++..++|+||||+..|++|+|+||+|.++||||++|+++.++.|+++.|.++|||+|||+|.......|+||+|+||
T Consensus 197 ~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~ 276 (409)
T PLN03010 197 NILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHC 276 (409)
T ss_pred EEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEee
Confidence 99999888999999999999999999999999999999999999999999999999999999998765567999999999
Q ss_pred EEECCccccC
Q 036371 236 VFTGTQNGLL 245 (245)
Q Consensus 236 ~~~~~~~g~~ 245 (245)
+|.++.+|++
T Consensus 277 ~i~~t~~Gir 286 (409)
T PLN03010 277 TFNQTTNGAR 286 (409)
T ss_pred EEeCCCcceE
Confidence 9999999874
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=9.2e-44 Score=306.13 Aligned_cols=216 Identities=36% Similarity=0.628 Sum_probs=183.1
Q ss_pred hhcCCCcEEEecCceeEEEeEEeeccCCCCCeEEEECCEEEeeccccccCCCcceEEEcCeeceEEEc-cEEeCCCCccc
Q 036371 28 CASTESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIG-GALDAKGSSLW 106 (245)
Q Consensus 28 ~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-g~idG~g~~~w 106 (245)
|++.++++|+||+|+|+++++.|++++++ ++.+.++|++.++.....+.. .++|.+.+++|+.|+| |+|||+|+.||
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~ 78 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWW 78 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECET-TCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTC
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhh
Confidence 56667889999999999999999876666 899999999999866655554 6889999999999999 99999999999
Q ss_pred ccccC-CCCCCCCceEEE---EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEec
Q 036371 107 ACKAS-GTNCPDGATLYQ---LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNC 182 (245)
Q Consensus 107 ~~~~~-~~~~~~~~~~~~---~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~ 182 (245)
+.... ......+|+++. |+|++|++++++|+|.|++++..|++++|++++|.++...+++|||++.+|++|+|+||
T Consensus 79 ~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~ 158 (326)
T PF00295_consen 79 DGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENC 158 (326)
T ss_dssp SSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESE
T ss_pred ccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEe
Confidence 85532 012234455444 99999999999999999999999999999999999988789999999999999999999
Q ss_pred EEeeCCeeEEecCCCeeEEEEeeEEcCCceEEEeccCcCCCCCCeEEEEEEeEEEECCccccC
Q 036371 183 TIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGLL 245 (245)
Q Consensus 183 ~i~~~dD~i~i~~~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~g~~ 245 (245)
+++++||||++|++..||+|+||+|.++||++|||++.......|+||+|+||+|.++.+|++
T Consensus 159 ~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~ 221 (326)
T PF00295_consen 159 FIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIR 221 (326)
T ss_dssp EEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEE
T ss_pred ecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEE
Confidence 999999999999998899999999999999999999866433469999999999999998863
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.8e-40 Score=292.07 Aligned_cols=234 Identities=30% Similarity=0.458 Sum_probs=196.0
Q ss_pred CceecccccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCceeEEEeEEeeccCCCCCeEEEEC-C-EEEeeccccccCC
Q 036371 1 YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRID-G-TLVAPADYCVLGQ 78 (245)
Q Consensus 1 ~~v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~-g-~l~~~~~~~~~~~ 78 (245)
++|.+|||+|||.+|+++|||+||++ |++.+|++|+||+|+|+.++|.|+ | +++|+++ | +|+.+.++..|+.
T Consensus 83 ~sv~~~ga~gDG~t~~~~aiq~AI~~-ca~a~Gg~V~lPaGtylsg~l~LK----S-~~~L~l~egatl~~~~~p~~y~~ 156 (542)
T COG5434 83 FSVSDDGAVGDGATDNTAAIQAAIDA-CASAGGGTVLLPAGTYLSGPLFLK----S-NVTLHLAEGATLLASSNPKDYPS 156 (542)
T ss_pred eeeccccccccCCccCHHHHHHHHHh-hhhhcCceEEECCceeEeeeEEEe----c-ccEEEecCCceeeCCCChhhccc
Confidence 58999999999999999999999985 577899999999999999999998 8 9999995 7 9999999988883
Q ss_pred --------Ccc-----------------------eEEEcCeeceE-EEc-cEEeCCC----Cccccccc--CC--CCCCC
Q 036371 79 --------ADN-----------------------WLSFEGVSGVS-IIG-GALDAKG----SSLWACKA--SG--TNCPD 117 (245)
Q Consensus 79 --------~~~-----------------------~i~~~~~~nv~-I~G-g~idG~g----~~~w~~~~--~~--~~~~~ 117 (245)
..+ .+.....+|.. |.| ++++|++ ..||.... .. ...+.
T Consensus 157 ~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~i~~~~~ 236 (542)
T COG5434 157 FTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIGGKGV 236 (542)
T ss_pred cccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhcccccCc
Confidence 111 12222345555 888 8999865 12564322 00 11112
Q ss_pred CceEEE---EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEec
Q 036371 118 GATLYQ---LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIG 194 (245)
Q Consensus 118 ~~~~~~---~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~ 194 (245)
+|.++. |+|+.+++++|.+++.|.+++..|++++++|++|.++... ++|||++.+|+||+|++|+|+.+||||+++
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~ik 315 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIK 315 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceEEee
Confidence 344333 9999999999999999999999999999999999998665 999999999999999999999999999999
Q ss_pred CC-----------CeeEEEEeeEEcCCc-eEEEeccCcCCCCCCeEEEEEEeEEEECCccccC
Q 036371 195 PG-----------TKNLWIERVTCGPAH-GISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGLL 245 (245)
Q Consensus 195 ~~-----------~~ni~i~n~~~~~~~-Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~g~~ 245 (245)
++ +++|.|++|++..+| ++.+||| ..+.++||+++||.|.++.+|++
T Consensus 316 sg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLR 374 (542)
T COG5434 316 SGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLR 374 (542)
T ss_pred cccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceee
Confidence 86 699999999999998 5999999 46789999999999999999875
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.96 E-value=7.2e-28 Score=208.57 Aligned_cols=217 Identities=19% Similarity=0.228 Sum_probs=168.2
Q ss_pred CceecccccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCceeEEEeEEeeccCCCCCeEEEEC-CEEEeeccccccCCC
Q 036371 1 YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRID-GTLVAPADYCVLGQA 79 (245)
Q Consensus 1 ~~v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~-g~l~~~~~~~~~~~~ 79 (245)
+++++|||++||++|+|+|||+||++| + .++++|.+|||+|+.+++.|+ + +++|.++ |.....-+ ..
T Consensus 38 ~dv~~fGa~~dG~td~T~ALQaAIdaA-a-~gG~tV~Lp~G~Y~~G~L~L~----s-pltL~G~~gAt~~vId-----G~ 105 (455)
T TIGR03808 38 RDATQYGVRPNSPDDQTRALQRAIDEA-A-RAQTPLALPPGVYRTGPLRLP----S-GAQLIGVRGATRLVFT-----GG 105 (455)
T ss_pred CCHHHcCcCCCCcchHHHHHHHHHHHh-h-cCCCEEEECCCceecccEEEC----C-CcEEEecCCcEEEEEc-----CC
Confidence 588999999999999999999999976 4 357899999999999999998 6 8999987 43211001 11
Q ss_pred cceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEE-EecEEEEeeEEecCCCeEEEEeCcc----------
Q 036371 80 DNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ-LQNIRINGLLSLNSQMFHIVINGCK---------- 148 (245)
Q Consensus 80 ~~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~-~~nv~i~~v~i~n~~~~~i~~~~~~---------- 148 (245)
..++...++++|+|+|.+|+|+|..|.. ++ ..+.+. |++++|++++|.++..|++.+..|+
T Consensus 106 ~~lIiai~A~nVTIsGLtIdGsG~dl~~-------rd-AgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g 177 (455)
T TIGR03808 106 PSLLSSEGADGIGLSGLTLDGGGIPLPQ-------RR-GLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQ 177 (455)
T ss_pred ceEEEEecCCCeEEEeeEEEeCCCcccC-------CC-CEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEec
Confidence 3456566799999999999999975421 11 234445 9999999999999999999999999
Q ss_pred ------------cEEEEeEEEECCCC--------------------------------CCCCCeeeccCeecEEEEecEE
Q 036371 149 ------------DVHIEGVTVIAPGN--------------------------------SPNTDGIHVQLSTNAKIMNCTI 184 (245)
Q Consensus 149 ------------~i~i~n~~i~~~~~--------------------------------~~~~dGi~~~~s~~v~I~n~~i 184 (245)
+..|++.+|....+ ....+||+++.+.+++|++++|
T Consensus 178 ~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I 257 (455)
T TIGR03808 178 IAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRI 257 (455)
T ss_pred cccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEE
Confidence 88888888887544 2356899999999999999999
Q ss_pred eeCC-eeEEecCCCeeEEEEeeEEcCCceEEEeccCcCCCCCCeEEEEEEeEEEECCcccc
Q 036371 185 KTGD-DCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGL 244 (245)
Q Consensus 185 ~~~d-D~i~i~~~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~g~ 244 (245)
+..+ |+|.+.+ ++|++|++|+|....-.+|-++ +..+.-.|+||++.++..|+
T Consensus 258 ~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym------fs~~g~~i~~N~~~g~~~G~ 311 (455)
T TIGR03808 258 RNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE------FAFEGAVIANNTVDGAAVGV 311 (455)
T ss_pred eccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE------EeCCCcEEeccEEecCcceE
Confidence 9998 9998888 7788999998885543344343 33433467777777776654
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.94 E-value=3.9e-25 Score=180.85 Aligned_cols=211 Identities=27% Similarity=0.366 Sum_probs=138.8
Q ss_pred CceecccccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCceeEEEe-EEeeccCCCCCeEEEECC---EEEe-eccccc
Q 036371 1 YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGY-VAFNGDCKSSDITFRIDG---TLVA-PADYCV 75 (245)
Q Consensus 1 ~~v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~-l~l~~~~~s~~~~l~~~g---~l~~-~~~~~~ 75 (245)
+||++|||+|||++|||+|||+||+++ ++.++++|+||||+|++++ +.++ + +++|+++| +++. ......
T Consensus 2 inv~~fGa~~dG~tDdt~Aiq~Ai~~~-~~~~g~~v~~P~G~Y~i~~~l~~~----s-~v~l~G~g~~~~~~~~~~~~~~ 75 (225)
T PF12708_consen 2 INVTDFGAKGDGVTDDTAAIQAAIDAA-AAAGGGVVYFPPGTYRISGTLIIP----S-NVTLRGAGGNSTILFLSGSGDS 75 (225)
T ss_dssp EEGGGGT--TEEEEE-HHHHHHHHHHH-CSTTSEEEEE-SEEEEESS-EEE-----T-TEEEEESSTTTEEEEECTTTST
T ss_pred cceeecCcCCCCChhHHHHHHHhhhhc-ccCCCeEEEEcCcEEEEeCCeEcC----C-CeEEEccCCCeeEEEecCcccc
Confidence 589999999999999999999999655 6678999999999999986 8887 6 99999986 3333 222222
Q ss_pred cCCCcceEEEcC-eec--eEEEccEEeCCCCcccccccCCCCCCCCceEEE-EecEEEEeeEEecCCCeEEEEeCcccEE
Q 036371 76 LGQADNWLSFEG-VSG--VSIIGGALDAKGSSLWACKASGTNCPDGATLYQ-LQNIRINGLLSLNSQMFHIVINGCKDVH 151 (245)
Q Consensus 76 ~~~~~~~i~~~~-~~n--v~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~-~~nv~i~~v~i~n~~~~~i~~~~~~~i~ 151 (245)
+........+.. ..+ +.|++.+|++++...-. ....+.+. +++++|++|++.+....++.+..+....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~~~--------~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~ 147 (225)
T PF12708_consen 76 FSVVPGIGVFDSGNSNIGIQIRNLTIDGNGIDPNN--------NNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYR 147 (225)
T ss_dssp SCCEEEEEECCSCSCCEEEEEEEEEEEETCGCE-S--------CEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECE
T ss_pred cccccceeeeecCCCCceEEEEeeEEEcccccCCC--------CceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCc
Confidence 221111122222 122 33666677776542110 00122223 8999999999999888888888665555
Q ss_pred EEeEEEECCCCCCCCCeeeccC-eecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcC-C-ceEEEeccCcCCCCCCeE
Q 036371 152 IEGVTVIAPGNSPNTDGIHVQL-STNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGP-A-HGISIGSLGKDMNDEGVQ 228 (245)
Q Consensus 152 i~n~~i~~~~~~~~~dGi~~~~-s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~-~-~Gi~igs~g~~~~~~~~~ 228 (245)
+.+..... ++.+.. +.++.+.++.+..++.++ ..+.+++.++||++.. . .||.+... .
T Consensus 148 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~i~n~~~~~~~~~gi~i~~~---------~ 208 (225)
T PF12708_consen 148 IIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGI--ILGNNNITISNNTFEGNCGNGINIEGG---------S 208 (225)
T ss_dssp EECCEEEE--------EEEEESCEEEEEEECEEEESSSCSE--ECEEEEEEEECEEEESSSSESEEEEEC---------S
T ss_pred Eeecccce--------eeeeccceeEEEECCccccCCCcee--EeecceEEEEeEEECCccceeEEEECC---------e
Confidence 54433221 333333 467778999999988884 3334899999999986 3 58888443 2
Q ss_pred EEEEEeEEEECCcccc
Q 036371 229 NVTVIRTVFTGTQNGL 244 (245)
Q Consensus 229 ni~i~n~~~~~~~~g~ 244 (245)
++.|+|++|+++..|+
T Consensus 209 ~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 209 NIIISNNTIENCDDGI 224 (225)
T ss_dssp EEEEEEEEEESSSEEE
T ss_pred EEEEEeEEEECCccCc
Confidence 3899999999999886
No 11
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.76 E-value=1.4e-16 Score=136.46 Aligned_cols=190 Identities=20% Similarity=0.198 Sum_probs=121.3
Q ss_pred HHHHHHHHhhcCCCcEEEecCceeEE-EeEEeeccCCCCCeEEEECC---EEEeeccccccCCCcceEEEcCeeceEEEc
Q 036371 20 FAKAWAAACASTESATINVPKGRYLL-GYVAFNGDCKSSDITFRIDG---TLVAPADYCVLGQADNWLSFEGVSGVSIIG 95 (245)
Q Consensus 20 iq~Ai~~a~~~~~g~~v~ip~G~Y~~-~~l~l~~~~~s~~~~l~~~g---~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G 95 (245)
||+||++| .+|.+|+||||+|.+ +++.+.. + +++|+.+| +++-..... . ....+... +++|+|++
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~~---~-~Iti~G~g~~~tvid~~~~~--~-~~~~i~v~-a~~VtI~~ 69 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLDA---D-GVTIRGAGMDETILDFSGQV--G-GAEGLLVT-SDDVTLSD 69 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEeC---C-CeEEEecCCCccEEecccCC--C-CCceEEEE-eCCeEEEe
Confidence 69999977 679999999999987 5788862 4 89999876 333211111 0 12234443 78999998
Q ss_pred cEEeCCCCcccccccCCCCCCCCceEEE-EecEEEEeeEEe-------cCCCeEEEEeCcccEEEEeEEEECCCCCCCCC
Q 036371 96 GALDAKGSSLWACKASGTNCPDGATLYQ-LQNIRINGLLSL-------NSQMFHIVINGCKDVHIEGVTVIAPGNSPNTD 167 (245)
Q Consensus 96 g~idG~g~~~w~~~~~~~~~~~~~~~~~-~~nv~i~~v~i~-------n~~~~~i~~~~~~~i~i~n~~i~~~~~~~~~d 167 (245)
.++...+. ..+.+. |++++|+++++. ....+++.+..|++++|+++.+... ...
T Consensus 70 ltI~~~~~--------------~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~----~d~ 131 (314)
T TIGR03805 70 LAVENTKG--------------DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGA----SDA 131 (314)
T ss_pred eEEEcCCC--------------CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECC----Ccc
Confidence 66654321 123333 778888888775 1246778888888888888888764 223
Q ss_pred eeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCC-ceEEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 168 GIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPA-HGISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 168 Gi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
||.+..|++++|++|++...+.+|.+.. +.++.|.+|++... .|+.+.++.... ...-++++|++|++.++
T Consensus 132 GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~~-~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 132 GIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGLP-QPGGSNVRVFDNIIFDN 203 (314)
T ss_pred cEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCCC-cCCccceEEECCEEECC
Confidence 7777777777777777776666666654 55667777776653 366664432211 12345666666666544
No 12
>PLN02793 Probable polygalacturonase
Probab=99.70 E-value=2.7e-15 Score=133.40 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=128.4
Q ss_pred CeEEEECCEEEeeccccccCC------------CcceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEEEe
Q 036371 58 DITFRIDGTLVAPADYCVLGQ------------ADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQ 125 (245)
Q Consensus 58 ~~~l~~~g~l~~~~~~~~~~~------------~~~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~~~ 125 (245)
+++|.+.|+|-..-. .-|.. ...++.+.+++|+.|+|-++.... .|. ..+..|+
T Consensus 144 ni~ItG~G~IDG~G~-~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp--~~~-----------i~~~~~~ 209 (443)
T PLN02793 144 HLTVEGGGTVNGMGH-EWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ--QMH-----------IAFTNCR 209 (443)
T ss_pred eEEEEeceEEECCCc-ccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC--CeE-----------EEEEccC
Confidence 788888777764321 11110 123688999999999996554332 232 2333399
Q ss_pred cEEEEeeEEecCC----CeEEEEeCcccEEEEeEEEECCCCCCCCCeeecc-CeecEEEEecEEeeCCeeEEecC-----
Q 036371 126 NIRINGLLSLNSQ----MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNAKIMNCTIKTGDDCIPIGP----- 195 (245)
Q Consensus 126 nv~i~~v~i~n~~----~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~-~s~~v~I~n~~i~~~dD~i~i~~----- 195 (245)
|++|++++|.++. .-+|++..|++|+|+|++|.+ ..|+|.+. +|+||+|+||.+..+. +|++++
T Consensus 210 nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I~n~~c~~Gh-GisIGSlg~~~ 283 (443)
T PLN02793 210 RVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKIRNIACGPGH-GISIGSLGKSN 283 (443)
T ss_pred cEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEEEEeEEeCCc-cEEEecccCcC
Confidence 9999999998743 347999999999999999998 57899995 6899999999998886 599987
Q ss_pred ---CCeeEEEEeeEEcCC-ceEEEeccCcCCCCCCeEEEEEEeEEEECCccccC
Q 036371 196 ---GTKNLWIERVTCGPA-HGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGLL 245 (245)
Q Consensus 196 ---~~~ni~i~n~~~~~~-~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~g~~ 245 (245)
+.+||+|+||++.++ .|+.|.+.-.. .+.++||+|+|++|.+..++|+
T Consensus 284 ~~~~V~nV~v~n~~~~~t~~GirIKt~~g~--~G~v~nItf~ni~m~nv~~pI~ 335 (443)
T PLN02793 284 SWSEVRDITVDGAFLSNTDNGVRIKTWQGG--SGNASKITFQNIFMENVSNPII 335 (443)
T ss_pred CCCcEEEEEEEccEEeCCCceEEEEEeCCC--CEEEEEEEEEeEEEecCCceEE
Confidence 279999999999986 59999997322 3579999999999999998863
No 13
>PLN02218 polygalacturonase ADPG
Probab=99.69 E-value=5.1e-15 Score=131.11 Aligned_cols=143 Identities=13% Similarity=0.207 Sum_probs=116.9
Q ss_pred eEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEEEecEEEEeeEEecCC----CeEEEEeCcccEEEEeEEE
Q 036371 82 WLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQ----MFHIVINGCKDVHIEGVTV 157 (245)
Q Consensus 82 ~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~~~nv~i~~v~i~n~~----~~~i~~~~~~~i~i~n~~i 157 (245)
++.+.+++|+.|+|-++..... |. ..+..|+|++|++++|.++. .-+|++..|++|+|+|+.|
T Consensus 194 ~i~f~~~~nv~I~gitl~nSp~--w~-----------i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I 260 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNAQQ--IQ-----------ISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSII 260 (431)
T ss_pred EEEEEccccEEEeCeEEEcCCC--EE-----------EEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEE
Confidence 6888999999999977654332 32 33344999999999998632 3479999999999999999
Q ss_pred ECCCCCCCCCeeeccC-eecEEEEecEEeeCCeeEEecCC--------CeeEEEEeeEEcCC-ceEEEeccCcCCCCCCe
Q 036371 158 IAPGNSPNTDGIHVQL-STNAKIMNCTIKTGDDCIPIGPG--------TKNLWIERVTCGPA-HGISIGSLGKDMNDEGV 227 (245)
Q Consensus 158 ~~~~~~~~~dGi~~~~-s~~v~I~n~~i~~~dD~i~i~~~--------~~ni~i~n~~~~~~-~Gi~igs~g~~~~~~~~ 227 (245)
.. ..|+|.+.+ |+||+|+||++..+. +|+|++. .+||+|+||++.++ .|+.|.+.-.. .+.+
T Consensus 261 ~t-----GDDcIaIksgs~nI~I~n~~c~~GH-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg--~G~v 332 (431)
T PLN02218 261 GT-----GDDCISIESGSQNVQINDITCGPGH-GISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGG--SGTA 332 (431)
T ss_pred ec-----CCceEEecCCCceEEEEeEEEECCC-CEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCC--CeEE
Confidence 98 578888874 789999999998775 5999773 58999999999986 59999998322 3679
Q ss_pred EEEEEEeEEEECCccccC
Q 036371 228 QNVTVIRTVFTGTQNGLL 245 (245)
Q Consensus 228 ~ni~i~n~~~~~~~~g~~ 245 (245)
+||+|+|++|.+..++|+
T Consensus 333 ~nI~f~ni~m~~V~~pI~ 350 (431)
T PLN02218 333 SNIIFQNIQMENVKNPII 350 (431)
T ss_pred EEEEEEeEEEEcccccEE
Confidence 999999999999988763
No 14
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.67 E-value=1e-14 Score=129.19 Aligned_cols=166 Identities=14% Similarity=0.176 Sum_probs=128.5
Q ss_pred CeEEEECCEEEeeccccccC---CCcceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEEEecEEEEeeEE
Q 036371 58 DITFRIDGTLVAPADYCVLG---QADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLS 134 (245)
Q Consensus 58 ~~~l~~~g~l~~~~~~~~~~---~~~~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~~~nv~i~~v~i 134 (245)
+++|.+.|+|-..-. .-|. ....++.+.+++|+.|+|-++.... +|. ..+..|+|++|++++|
T Consensus 114 ~i~I~G~GtIDGqG~-~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp--~w~-----------i~i~~c~nV~i~~l~I 179 (456)
T PLN03003 114 GLVIEGDGEINGQGS-SWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP--MAH-----------IHISECNYVTISSLRI 179 (456)
T ss_pred ceEEeccceEeCCch-hhhhcccCCceEEEEEecCCcEEeCeEEecCC--cEE-----------EEEeccccEEEEEEEE
Confidence 788888887765321 1222 1234688889999999996654332 232 3333499999999999
Q ss_pred ecCC----CeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccC-eecEEEEecEEeeCCeeEEecCC--------CeeEE
Q 036371 135 LNSQ----MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQL-STNAKIMNCTIKTGDDCIPIGPG--------TKNLW 201 (245)
Q Consensus 135 ~n~~----~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~-s~~v~I~n~~i~~~dD~i~i~~~--------~~ni~ 201 (245)
.++. ..+|++..|++|+|+|+.|.+ ..|+|.+.+ |+||+|+||.+..+. +|+|++. .+||+
T Consensus 180 ~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDDCIaiksgs~NI~I~n~~c~~GH-GISIGSlg~~g~~~~V~NV~ 253 (456)
T PLN03003 180 NAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDDCIAINSGTSNIHISGIDCGPGH-GISIGSLGKDGETATVENVC 253 (456)
T ss_pred eCCCCCCCCCcEeecCcceEEEEecEEec-----CCCeEEeCCCCccEEEEeeEEECCC-CeEEeeccCCCCcceEEEEE
Confidence 9742 346999999999999999998 578999874 789999999998775 6998762 79999
Q ss_pred EEeeEEcCC-ceEEEeccCcCCCCCCeEEEEEEeEEEECCccccC
Q 036371 202 IERVTCGPA-HGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGLL 245 (245)
Q Consensus 202 i~n~~~~~~-~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~g~~ 245 (245)
|+||++.++ .|+.|.+.-.. .+.++||+|+|++|.++.++|+
T Consensus 254 v~n~~~~~T~nGvRIKT~~Gg--~G~v~nItf~nI~m~nV~~pI~ 296 (456)
T PLN03003 254 VQNCNFRGTMNGARIKTWQGG--SGYARMITFNGITLDNVENPII 296 (456)
T ss_pred EEeeEEECCCcEEEEEEeCCC--CeEEEEEEEEeEEecCccceEE
Confidence 999999987 59999998322 2579999999999999998763
No 15
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.65 E-value=2.1e-14 Score=126.36 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=128.3
Q ss_pred CeEEEECCEEEeeccccccC-----------CCcceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEEEec
Q 036371 58 DITFRIDGTLVAPADYCVLG-----------QADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQN 126 (245)
Q Consensus 58 ~~~l~~~g~l~~~~~~~~~~-----------~~~~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~~~n 126 (245)
+++|.+.|+|-..-. .-|. ....++.+.+++|+.|+|-++..... |. ..+..|+|
T Consensus 123 ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~--w~-----------i~~~~~~~ 188 (404)
T PLN02188 123 GLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKF--FH-----------IALVECRN 188 (404)
T ss_pred eEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCC--eE-----------EEEEcccc
Confidence 677777777765332 1221 11236788889999999966654322 32 33344999
Q ss_pred EEEEeeEEecCC----CeEEEEeCcccEEEEeEEEECCCCCCCCCeeecc-CeecEEEEecEEeeCCeeEEecC------
Q 036371 127 IRINGLLSLNSQ----MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQ-LSTNAKIMNCTIKTGDDCIPIGP------ 195 (245)
Q Consensus 127 v~i~~v~i~n~~----~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~-~s~~v~I~n~~i~~~dD~i~i~~------ 195 (245)
++|++++|.++. .-+|++..|++++|+|+.|.. ..|+|.+. .+++|+|+|+....+. +|++++
T Consensus 189 v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~gh-GisiGSlG~~~~ 262 (404)
T PLN02188 189 FKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGPGH-GISVGSLGRYPN 262 (404)
T ss_pred EEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcCCC-cEEeCCCCCCCc
Confidence 999999998643 346999999999999999998 57899996 5789999999998775 599877
Q ss_pred --CCeeEEEEeeEEcCC-ceEEEeccCcCCCCCCeEEEEEEeEEEECCcccc
Q 036371 196 --GTKNLWIERVTCGPA-HGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGL 244 (245)
Q Consensus 196 --~~~ni~i~n~~~~~~-~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~g~ 244 (245)
+.+||+|+||++.++ .|+.|.+.....+.+.++||+|+|++|.+..++|
T Consensus 263 ~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI 314 (404)
T PLN02188 263 EGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPI 314 (404)
T ss_pred CCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceE
Confidence 279999999999986 5999998743333467999999999999998876
No 16
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.65 E-value=2.1e-14 Score=126.44 Aligned_cols=183 Identities=20% Similarity=0.276 Sum_probs=112.0
Q ss_pred CcEEEecCceeEEEe---EEeeccCCCCC-eEEEEC-CEEEeeccccccCCCcceEEEcCeeceEEEc-cEEeCCCCccc
Q 036371 33 SATINVPKGRYLLGY---VAFNGDCKSSD-ITFRID-GTLVAPADYCVLGQADNWLSFEGVSGVSIIG-GALDAKGSSLW 106 (245)
Q Consensus 33 g~~v~ip~G~Y~~~~---l~l~~~~~s~~-~~l~~~-g~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-g~idG~g~~~w 106 (245)
-.+|||+||+|-+++ +.|. + + ..++++ |.+.. +++.....++|+.|.| |++.|....|-
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~----s-n~~~VYlApGAyVk----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy~ 296 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLP----S-NTKWVYLAPGAYVK----------GAFEYTDTQQNVKITGRGVLSGEQYVYE 296 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-----T-T--EEEE-TTEEEE----------S-EEE---SSEEEEESSSEEE-TTS-TT
T ss_pred cceEEeCCceEEeCCCccEEEC----C-CccEEEEcCCcEEE----------EEEEEccCCceEEEEeeEEEcCcceeEe
Confidence 479999999999975 7777 4 5 478887 65542 2344445789999999 99999876553
Q ss_pred ccccCC-------CCCCC-CceEEE------EecEEEEeeEEecCCCeEEEEeCccc----EEEEeEEEECCCCCCCCCe
Q 036371 107 ACKASG-------TNCPD-GATLYQ------LQNIRINGLLSLNSQMFHIVINGCKD----VHIEGVTVIAPGNSPNTDG 168 (245)
Q Consensus 107 ~~~~~~-------~~~~~-~~~~~~------~~nv~i~~v~i~n~~~~~i~~~~~~~----i~i~n~~i~~~~~~~~~dG 168 (245)
...... .+++. ...++. ++++.+++++|.++|+|.+.+....+ ..|+|..+.... ..++||
T Consensus 297 A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW-~~qtDG 375 (582)
T PF03718_consen 297 ADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW-YFQTDG 375 (582)
T ss_dssp BBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT---
T ss_pred ccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeE-EeccCC
Confidence 222111 11111 123332 77999999999999999999997664 899999998753 348999
Q ss_pred eeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCCc-e--EEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 169 IHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAH-G--ISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 169 i~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~-G--i~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
|.+. ++-+|+||+++..||+|.+.. +++.|+||+++..+ | +.+|-. ...+++|.|+|+.+..+
T Consensus 376 i~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~ 441 (582)
T PF03718_consen 376 IELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHN 441 (582)
T ss_dssp -B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE-
T ss_pred cccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEee
Confidence 9996 566789999999999997654 59999999999754 3 777644 35699999999999876
No 17
>PLN02155 polygalacturonase
Probab=99.62 E-value=6.5e-14 Score=122.80 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=116.7
Q ss_pred ceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEEEecEEEEeeEEecCC----CeEEEEeCcccEEEEeEE
Q 036371 81 NWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQ----MFHIVINGCKDVHIEGVT 156 (245)
Q Consensus 81 ~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~~~nv~i~~v~i~n~~----~~~i~~~~~~~i~i~n~~ 156 (245)
.++.+.+++++.|+|-++.... .|. ..+..|+|++|++++|.++. .-++++..|++++|+|+.
T Consensus 146 ~~i~~~~~~nv~i~gitl~nSp--~w~-----------i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~ 212 (394)
T PLN02155 146 RSISFNSAKDVIISGVKSMNSQ--VSH-----------MTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGST 212 (394)
T ss_pred cceeEEEeeeEEEECeEEEcCC--CeE-----------EEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeE
Confidence 3588889999999996664332 232 33334999999999998753 247999999999999999
Q ss_pred EECCCCCCCCCeeeccC-eecEEEEecEEeeCCeeEEecCC--------CeeEEEEeeEEcCC-ceEEEeccCcCCCCCC
Q 036371 157 VIAPGNSPNTDGIHVQL-STNAKIMNCTIKTGDDCIPIGPG--------TKNLWIERVTCGPA-HGISIGSLGKDMNDEG 226 (245)
Q Consensus 157 i~~~~~~~~~dGi~~~~-s~~v~I~n~~i~~~dD~i~i~~~--------~~ni~i~n~~~~~~-~Gi~igs~g~~~~~~~ 226 (245)
|.. ..|+|.+.+ |+||+|+||.+..+. +|+|++. .+||+|+||++.++ .|+.|.+.... ..+.
T Consensus 213 I~~-----gDDcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~-~gG~ 285 (394)
T PLN02155 213 VQT-----GDDCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARP-STGF 285 (394)
T ss_pred Eec-----CCceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCC-CCEE
Confidence 998 578898875 789999999998875 5999872 59999999999986 59999985221 2367
Q ss_pred eEEEEEEeEEEECCccccC
Q 036371 227 VQNVTVIRTVFTGTQNGLL 245 (245)
Q Consensus 227 ~~ni~i~n~~~~~~~~g~~ 245 (245)
++||+|+|++|.++.++++
T Consensus 286 v~nI~f~ni~m~~v~~pI~ 304 (394)
T PLN02155 286 VRNVFFQDLVMKNVENPII 304 (394)
T ss_pred EEEEEEEeEEEcCccccEE
Confidence 9999999999999988763
No 18
>PLN03010 polygalacturonase
Probab=99.61 E-value=1.3e-13 Score=121.28 Aligned_cols=162 Identities=15% Similarity=0.171 Sum_probs=125.0
Q ss_pred CeEEEECCEEEeeccccccCCCcceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEEEecEEEEeeEEecC
Q 036371 58 DITFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNS 137 (245)
Q Consensus 58 ~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~~~nv~i~~v~i~n~ 137 (245)
++.|.+.|+|...- ..|. .++.+.+++|+.|+|-++.... .|. ..+..|+|++|++++|.++
T Consensus 140 nv~I~G~G~IDG~G--~~ww---~~l~~~~~~nv~v~gitl~nsp--~~~-----------i~i~~~~nv~i~~i~I~a~ 201 (409)
T PLN03010 140 GLMIDGSGTIDGRG--SSFW---EALHISKCDNLTINGITSIDSP--KNH-----------ISIKTCNYVAISKINILAP 201 (409)
T ss_pred ccEEeeceEEeCCC--cccc---ceEEEEeecCeEEeeeEEEcCC--ceE-----------EEEeccccEEEEEEEEeCC
Confidence 78888888886522 2332 2588899999999996664332 232 2233499999999999975
Q ss_pred C----CeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccC-eecEEEEecEEeeCCeeEEecCC--------CeeEEEEe
Q 036371 138 Q----MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQL-STNAKIMNCTIKTGDDCIPIGPG--------TKNLWIER 204 (245)
Q Consensus 138 ~----~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~-s~~v~I~n~~i~~~dD~i~i~~~--------~~ni~i~n 204 (245)
. .-++++..|++|+|+|+.|.+ ..|+|.+.+ +.++.|+++....+. +|+|++. .+||+|+|
T Consensus 202 ~~s~NTDGiDi~~s~nV~I~n~~I~~-----gDDcIaiksgs~ni~I~~~~C~~gH-GisIGS~g~~~~~~~V~nV~v~n 275 (409)
T PLN03010 202 ETSPNTDGIDISYSTNINIFDSTIQT-----GDDCIAINSGSSNINITQINCGPGH-GISVGSLGADGANAKVSDVHVTH 275 (409)
T ss_pred CCCCCCCceeeeccceEEEEeeEEec-----CCCeEEecCCCCcEEEEEEEeECcC-CEEEccCCCCCCCCeeEEEEEEe
Confidence 3 336999999999999999998 478888874 457888877776664 6998773 69999999
Q ss_pred eEEcCC-ceEEEeccCcCCCCCCeEEEEEEeEEEECCccccC
Q 036371 205 VTCGPA-HGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGLL 245 (245)
Q Consensus 205 ~~~~~~-~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~g~~ 245 (245)
|++.++ .|+.|.+.-.. .+.++||+|+|++|.++.++|+
T Consensus 276 ~~i~~t~~GirIKt~~G~--~G~v~nItf~nI~m~~v~~pI~ 315 (409)
T PLN03010 276 CTFNQTTNGARIKTWQGG--QGYARNISFENITLINTKNPII 315 (409)
T ss_pred eEEeCCCcceEEEEecCC--CEEEEEeEEEeEEEecCCccEE
Confidence 999987 59999998322 3579999999999999988863
No 19
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.59 E-value=4.5e-14 Score=121.93 Aligned_cols=143 Identities=24% Similarity=0.329 Sum_probs=115.3
Q ss_pred cceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEE-EecEEEEeeEEecCCC----eEEEEeCcccEEEEe
Q 036371 80 DNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ-LQNIRINGLLSLNSQM----FHIVINGCKDVHIEG 154 (245)
Q Consensus 80 ~~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~-~~nv~i~~v~i~n~~~----~~i~~~~~~~i~i~n 154 (245)
..++.+.+++++.|+|-++.... .| ...+. |+|++|++++|.+++. -++++..|++++|+|
T Consensus 92 p~~i~~~~~~~~~i~~i~~~nsp--~w------------~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n 157 (326)
T PF00295_consen 92 PRLIRFNNCKNVTIEGITIRNSP--FW------------HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIEN 157 (326)
T ss_dssp SESEEEEEEEEEEEESEEEES-S--SE------------SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEES
T ss_pred cceeeeeeecceEEEeeEecCCC--ee------------EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEE
Confidence 35688999999999996665332 23 33344 9999999999997654 379999999999999
Q ss_pred EEEECCCCCCCCCeeeccCee-cEEEEecEEeeCCeeEEecC---C-----CeeEEEEeeEEcCC-ceEEEeccCcCCCC
Q 036371 155 VTVIAPGNSPNTDGIHVQLST-NAKIMNCTIKTGDDCIPIGP---G-----TKNLWIERVTCGPA-HGISIGSLGKDMND 224 (245)
Q Consensus 155 ~~i~~~~~~~~~dGi~~~~s~-~v~I~n~~i~~~dD~i~i~~---~-----~~ni~i~n~~~~~~-~Gi~igs~g~~~~~ 224 (245)
+.|.+ ..|+|.+.+.+ +|+|+||++..+.. +++++ + .+||+|+||++.++ .|+.|.+.- ...
T Consensus 158 ~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~ghG-isiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~ 229 (326)
T PF00295_consen 158 CFIDN-----GDDCIAIKSGSGNILVENCTCSGGHG-ISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGG 229 (326)
T ss_dssp EEEES-----SSESEEESSEECEEEEESEEEESSSE-EEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET--TTS
T ss_pred eeccc-----ccCcccccccccceEEEeEEEecccc-ceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEec--ccc
Confidence 99998 57899998766 99999999987754 88864 2 48999999999986 599998863 123
Q ss_pred CCeEEEEEEeEEEECCcccc
Q 036371 225 EGVQNVTVIRTVFTGTQNGL 244 (245)
Q Consensus 225 ~~~~ni~i~n~~~~~~~~g~ 244 (245)
+.++||+|+|++|++..+++
T Consensus 230 G~v~nI~f~ni~~~~v~~pi 249 (326)
T PF00295_consen 230 GYVSNITFENITMENVKYPI 249 (326)
T ss_dssp EEEEEEEEEEEEEEEESEEE
T ss_pred eEEeceEEEEEEecCCceEE
Confidence 67999999999999988765
No 20
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.36 E-value=2.2e-11 Score=104.52 Aligned_cols=141 Identities=24% Similarity=0.334 Sum_probs=110.4
Q ss_pred EEEcCeeceEEEc-c----EEeCCCCcccccccCCCCCCCCceEEEEecEEEEeeEEecCCCeEEEEeCcccEEEEeEEE
Q 036371 83 LSFEGVSGVSIIG-G----ALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTV 157 (245)
Q Consensus 83 i~~~~~~nv~I~G-g----~idG~g~~~w~~~~~~~~~~~~~~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i 157 (245)
+.+. .++++|+| | ++++.++. .....+.+.+++++|+++++.++..++|.+..|++++|+++++
T Consensus 27 l~I~-~~~Iti~G~g~~~tvid~~~~~----------~~~~~i~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i 95 (314)
T TIGR03805 27 LSLD-ADGVTIRGAGMDETILDFSGQV----------GGAEGLLVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRV 95 (314)
T ss_pred EEEe-CCCeEEEecCCCccEEecccCC----------CCCceEEEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEE
Confidence 4443 47888888 4 46665541 0123555669999999999999999999999999999999999
Q ss_pred ECCCC---CCCCCeeeccCeecEEEEecEEeeCC-eeEEecCCCeeEEEEeeEEcCCc-eEEEeccCcCCCCCCeEEEEE
Q 036371 158 IAPGN---SPNTDGIHVQLSTNAKIMNCTIKTGD-DCIPIGPGTKNLWIERVTCGPAH-GISIGSLGKDMNDEGVQNVTV 232 (245)
Q Consensus 158 ~~~~~---~~~~dGi~~~~s~~v~I~n~~i~~~d-D~i~i~~~~~ni~i~n~~~~~~~-Gi~igs~g~~~~~~~~~ni~i 232 (245)
..... ....+||.+..|++++|++|+++... .+|.++. +++++|++|++.... ||-+.. -.++.+
T Consensus 96 ~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v 165 (314)
T TIGR03805 96 EWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADV 165 (314)
T ss_pred EeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEE
Confidence 85422 12578999999999999999999864 5898886 789999999998765 888732 246788
Q ss_pred EeEEEECCcccc
Q 036371 233 IRTVFTGTQNGL 244 (245)
Q Consensus 233 ~n~~~~~~~~g~ 244 (245)
+||++.++..|+
T Consensus 166 ~~N~~~~N~~Gi 177 (314)
T TIGR03805 166 YNNIATNNTGGI 177 (314)
T ss_pred ECCEEeccceeE
Confidence 899888887776
No 21
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=3.6e-10 Score=101.92 Aligned_cols=146 Identities=19% Similarity=0.298 Sum_probs=110.6
Q ss_pred ceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEEEecEEEEeeEEecCC---CeEEEEeCcccEEEEeEEE
Q 036371 81 NWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQ---MFHIVINGCKDVHIEGVTV 157 (245)
Q Consensus 81 ~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~~~nv~i~~v~i~n~~---~~~i~~~~~~~i~i~n~~i 157 (245)
..+.+.++.||.++|-.|.-. .+|. .+...|+|++++|++|.+.. ..++++..|+|+.|++|+|
T Consensus 239 ~~~~l~~c~NV~~~g~~i~ns--~~~~-----------~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~f 305 (542)
T COG5434 239 RTVVLKGCRNVLLEGLNIKNS--PLWT-----------VHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRF 305 (542)
T ss_pred ceEEEeccceEEEeeeEecCC--CcEE-----------EeeecccCceecceEEECCCCCCCCccccccceeEEEeccEE
Confidence 356778899999998444322 2343 33344999999999998653 3479999999999999999
Q ss_pred ECCCCC------CCCCe-eeccCeecEEEEecEEeeCCeeEEecCC----CeeEEEEeeEEcCC-ceEEEeccCcCCCCC
Q 036371 158 IAPGNS------PNTDG-IHVQLSTNAKIMNCTIKTGDDCIPIGPG----TKNLWIERVTCGPA-HGISIGSLGKDMNDE 225 (245)
Q Consensus 158 ~~~~~~------~~~dG-i~~~~s~~v~I~n~~i~~~dD~i~i~~~----~~ni~i~n~~~~~~-~Gi~igs~g~~~~~~ 225 (245)
+..++. ...++ =....|++++|++|.+..+...+.+.+. .+||++++|.+.+. .|+.|++.-.. .+
T Consensus 306 dtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~--gG 383 (542)
T COG5434 306 DTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGR--GG 383 (542)
T ss_pred ecCCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeeccc--ce
Confidence 985431 11221 1223589999999999999888888653 79999999999885 59999887433 37
Q ss_pred CeEEEEEEeEEEECCc
Q 036371 226 GVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 226 ~~~ni~i~n~~~~~~~ 241 (245)
.++||+|+++.|.+..
T Consensus 384 ~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 384 GVRNIVFEDNKMRNVK 399 (542)
T ss_pred eEEEEEEecccccCcc
Confidence 7999999999998763
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=99.17 E-value=3.9e-10 Score=91.60 Aligned_cols=141 Identities=13% Similarity=0.206 Sum_probs=95.6
Q ss_pred eeceEEEccEE-eCCCCccccccc--CCCCCCCCceEEE-EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCCCC
Q 036371 88 VSGVSIIGGAL-DAKGSSLWACKA--SGTNCPDGATLYQ-LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNS 163 (245)
Q Consensus 88 ~~nv~I~Gg~i-dG~g~~~w~~~~--~~~~~~~~~~~~~-~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~~~ 163 (245)
++++.|+...+ .+..+..|.... .....-..|.+|+ |+++.++++++.+++.. +..|++++++|+.+.+..-.
T Consensus 57 ~~~~~i~~~~f~~~aRa~iWYs~~i~m~d~~i~apK~fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~ 133 (277)
T PF12541_consen 57 SDNIKIENCYFTEMARAAIWYSNNITMKDSVIQAPKMFRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFF 133 (277)
T ss_pred ECCeEEEeeEEeecceeeeeEeCCEEEEeeeccCchHhhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEee
Confidence 57788888333 344444454221 1012234577888 99999999999888764 45778888888888553211
Q ss_pred C-----CCCeee------ccCeecEEEEecEEeeCC-----eeEEecCC----------CeeEEEEeeEEcCCceEEEec
Q 036371 164 P-----NTDGIH------VQLSTNAKIMNCTIKTGD-----DCIPIGPG----------TKNLWIERVTCGPAHGISIGS 217 (245)
Q Consensus 164 ~-----~~dGi~------~~~s~~v~I~n~~i~~~d-----D~i~i~~~----------~~ni~i~n~~~~~~~Gi~igs 217 (245)
. .-|++. +++|+||.|+|+.+.+.| ..+++..+ ++|+++.||++.+..|+-
T Consensus 134 m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS~i~GEYLgW~SkNltliNC~I~g~QpLC--- 210 (277)
T PF12541_consen 134 MNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDAFWNCENVTVYDSVINGEYLGWNSKNLTLINCTIEGTQPLC--- 210 (277)
T ss_pred eeccceEEeceEEeCCEEeeceeeEEEEccEEecccccccCCceEEEcceEeeeEEEEEcCCeEEEEeEEeccCccE---
Confidence 1 223333 346899999999998765 23444442 788888888888666644
Q ss_pred cCcCCCCCCeEEEEEEeEEEECCcc
Q 036371 218 LGKDMNDEGVQNVTVIRTVFTGTQN 242 (245)
Q Consensus 218 ~g~~~~~~~~~ni~i~n~~~~~~~~ 242 (245)
.++|++.+||+|.+++.
T Consensus 211 --------Y~~~L~l~nC~~~~tdl 227 (277)
T PF12541_consen 211 --------YCDNLVLENCTMIDTDL 227 (277)
T ss_pred --------eecceEEeCcEeeccee
Confidence 58899999999998764
No 23
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.78 E-value=2.3e-07 Score=76.56 Aligned_cols=79 Identities=24% Similarity=0.159 Sum_probs=38.0
Q ss_pred EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEE
Q 036371 124 LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIE 203 (245)
Q Consensus 124 ~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~ 203 (245)
+.+++|++..+.+.. .++.+..+.+.+|++.++... ..||.+..+.+.+|+++++.+...+|.+... .+.+|+
T Consensus 65 s~~~~i~~n~i~~n~-~Gi~l~~s~~~~I~~N~i~~n-----~~GI~l~~s~~~~I~~N~i~~~~~GI~l~~s-~~n~I~ 137 (236)
T PF05048_consen 65 SSNNTIENNTISNNG-YGIYLMGSSNNTISNNTISNN-----GYGIYLYGSSNNTISNNTISNNGYGIYLSSS-SNNTIT 137 (236)
T ss_pred cCCCEEEeEEEEccC-CCEEEEcCCCcEEECCEecCC-----CceEEEeeCCceEEECcEEeCCCEEEEEEeC-CCCEEE
Confidence 444555555554443 445555544445555555442 2255555545555555555544444544442 444455
Q ss_pred eeEEcC
Q 036371 204 RVTCGP 209 (245)
Q Consensus 204 n~~~~~ 209 (245)
+|+|..
T Consensus 138 ~N~i~~ 143 (236)
T PF05048_consen 138 GNTISN 143 (236)
T ss_pred CeEEeC
Confidence 555543
No 24
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.77 E-value=1.1e-06 Score=72.23 Aligned_cols=159 Identities=21% Similarity=0.224 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEecCceeEEE-----eEEeeccCCCCCeEEEECCEEEeeccccccCCCcceEEEcCeec
Q 036371 16 STQAFAKAWAAACASTESATINVPKGRYLLG-----YVAFNGDCKSSDITFRIDGTLVAPADYCVLGQADNWLSFEGVSG 90 (245)
Q Consensus 16 dt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~-----~l~l~~~~~s~~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~n 90 (245)
--+-|++|+++| .+|.+|++-||+|.-. ||.++ + +++|..+..-+.. ..
T Consensus 14 P~~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i~----~-gVtl~G~~~~kG~------------------~~ 67 (246)
T PF07602_consen 14 PFKTITKALQAA---QPGDTIQLAPGTYSEATGETFPIIIK----P-GVTLIGNESNKGQ------------------ID 67 (246)
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeccccCCcccEEec----C-CeEEeecccCCCc------------------ce
Confidence 345799999876 6789999999999753 46665 5 7888665321110 11
Q ss_pred eEEEc-c---EEeCCCCcccccccCCCCCCCC-ceEEEEecEEEEeeEEecC---CCeEEEEeCcccEEEEeEEEECCCC
Q 036371 91 VSIIG-G---ALDAKGSSLWACKASGTNCPDG-ATLYQLQNIRINGLLSLNS---QMFHIVINGCKDVHIEGVTVIAPGN 162 (245)
Q Consensus 91 v~I~G-g---~idG~g~~~w~~~~~~~~~~~~-~~~~~~~nv~i~~v~i~n~---~~~~i~~~~~~~i~i~n~~i~~~~~ 162 (245)
+.+.| + +|+|.+... +.. ..++...+.+|+++++.|+ ...++.+..+ +.+|+|++|...
T Consensus 68 il~~g~~~~~~I~g~~~~~----------~~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~-- 134 (246)
T PF07602_consen 68 ILITGGGTGPTISGGGPDL----------SGQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNN-- 134 (246)
T ss_pred EEecCCceEEeEeccCccc----------cceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECC--
Confidence 22222 0 233333210 011 2233377899999999988 4567888877 999999999986
Q ss_pred CCCCCeeeccCe------ecEEEEecEEeeCCeeEEecCCC--eeEEEEeeEEcC-CceEEE
Q 036371 163 SPNTDGIHVQLS------TNAKIMNCTIKTGDDCIPIGPGT--KNLWIERVTCGP-AHGISI 215 (245)
Q Consensus 163 ~~~~dGi~~~~s------~~v~I~n~~i~~~dD~i~i~~~~--~ni~i~n~~~~~-~~Gi~i 215 (245)
..+||.+... .+++|+++.+.....+|++.... ...+|+|+.+.. ..||.+
T Consensus 135 --~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~~ 194 (246)
T PF07602_consen 135 --GREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNAAPVENKIENNIIENNNIGIVA 194 (246)
T ss_pred --ccccEEEEeeecCCcccceEeecceEEecCcCeEEEcccCCccceeeccEEEeCCcCeEe
Confidence 4678866543 45667777776655577765432 224678888874 347664
No 25
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.67 E-value=2.4e-07 Score=70.87 Aligned_cols=135 Identities=26% Similarity=0.282 Sum_probs=88.4
Q ss_pred EEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEE-EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCC
Q 036371 83 LSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ-LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPG 161 (245)
Q Consensus 83 i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~-~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~ 161 (245)
+.+.+..+++|++.+|...+. ..+.+. ...++|++++|.+ ...++.+....+++++++.+...
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~--------------~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~- 66 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGG--------------DGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN- 66 (158)
T ss_dssp EEETTCEC-EEESEEEESSSS--------------ECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES--
T ss_pred EEEECCcCeEEeeeEEEeCCC--------------eEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc-
Confidence 456677788888877765422 245555 5567888888888 67788888889999999999875
Q ss_pred CCCCCCeeeccCeecEEEEecEEeeCC-eeEEecCCCeeEEEEeeEEcCC--ceEEEeccCcCCCCCCeEEEEEEeEEEE
Q 036371 162 NSPNTDGIHVQLSTNAKIMNCTIKTGD-DCIPIGPGTKNLWIERVTCGPA--HGISIGSLGKDMNDEGVQNVTVIRTVFT 238 (245)
Q Consensus 162 ~~~~~dGi~~~~s~~v~I~n~~i~~~d-D~i~i~~~~~ni~i~n~~~~~~--~Gi~igs~g~~~~~~~~~ni~i~n~~~~ 238 (245)
..|+.+..+..++|++|.+.... .+|.+....++++|++|++... .|+.+... .-.+++|++|++.
T Consensus 67 ----~~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~i~ 135 (158)
T PF13229_consen 67 ----GSGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNTIS 135 (158)
T ss_dssp ----SEEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEEEE
T ss_pred ----cceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEEEE
Confidence 27888888899999999998654 4888874367899999999864 57777443 1346788888888
Q ss_pred CCc-ccc
Q 036371 239 GTQ-NGL 244 (245)
Q Consensus 239 ~~~-~g~ 244 (245)
++. .|+
T Consensus 136 ~~~~~gi 142 (158)
T PF13229_consen 136 NNGGNGI 142 (158)
T ss_dssp CESSEEE
T ss_pred eCcceeE
Confidence 765 554
No 26
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.61 E-value=6.1e-07 Score=68.61 Aligned_cols=129 Identities=24% Similarity=0.272 Sum_probs=82.1
Q ss_pred ceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEE-EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEEC
Q 036371 81 NWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ-LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIA 159 (245)
Q Consensus 81 ~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~-~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~ 159 (245)
..+.+.+...+.|++-+|...+. .+.+. ..++.|+++++.+.. .++.+..+..++|+++.+..
T Consensus 24 ~gi~~~~~~~~~i~n~~i~~~~~---------------gi~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~i~~~~i~~ 87 (158)
T PF13229_consen 24 DGIHVSGSSNITIENCTISNGGY---------------GIYVSGGSNVTISNNTISDNG-SGIYVSGSSNITIENNRIEN 87 (158)
T ss_dssp ECEEE-SSCESEEES-EEESSTT---------------SEEEECCES-EEES-EEES-S-EEEECCS-CS-EEES-EEEC
T ss_pred eEEEEEcCCCeEEECeEEECCCc---------------EEEEecCCCeEEECeEEEEcc-ceEEEEecCCceecCcEEEc
Confidence 35666666667777755555221 33334 688999999999887 88999999999999999998
Q ss_pred CCCCCCCCeeeccC-eecEEEEecEEeeC-CeeEEecCCC-eeEEEEeeEEcCC--ceEEEeccCcCCCCCCeEEEEEEe
Q 036371 160 PGNSPNTDGIHVQL-STNAKIMNCTIKTG-DDCIPIGPGT-KNLWIERVTCGPA--HGISIGSLGKDMNDEGVQNVTVIR 234 (245)
Q Consensus 160 ~~~~~~~dGi~~~~-s~~v~I~n~~i~~~-dD~i~i~~~~-~ni~i~n~~~~~~--~Gi~igs~g~~~~~~~~~ni~i~n 234 (245)
. ...||.+.. +++++|++|++... ..++.+..+. .+++|++|++... .|+.+-+. -.+++|.|
T Consensus 88 ~----~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~--------~~~~~v~~ 155 (158)
T PF13229_consen 88 N----GDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISG--------SSNCTVTN 155 (158)
T ss_dssp S----SS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT---------SS--EEES
T ss_pred C----CCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECC--------CCeEEEEC
Confidence 6 344999987 89999999999865 4778777654 6999999999874 47877333 22778888
Q ss_pred EEE
Q 036371 235 TVF 237 (245)
Q Consensus 235 ~~~ 237 (245)
|+|
T Consensus 156 n~~ 158 (158)
T PF13229_consen 156 NTF 158 (158)
T ss_dssp -E-
T ss_pred CCC
Confidence 875
No 27
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.58 E-value=6.5e-06 Score=72.40 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEecCceeEEEeEEeecc--CCCCCeEEEEC
Q 036371 16 STQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGD--CKSSDITFRID 64 (245)
Q Consensus 16 dt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~--~~s~~~~l~~~ 64 (245)
+.++||+||++| .+|.+|+++.|+|.-..+.+.+. ... +++|+-+
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~~~~GT~~~-PItl~Ae 49 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVFKGSGTAAK-PITLRAE 49 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE-S--BTTB--EEEEES
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEEEecccCCC-CEEEEec
Confidence 468999999987 68999999999998445666532 112 5777665
No 28
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=1.9e-06 Score=71.63 Aligned_cols=118 Identities=21% Similarity=0.141 Sum_probs=82.9
Q ss_pred EecEEEEeeEEe-cCCCeEEEEeCcccEEEEeEEEECCC-CCCCCCeeec-cCeecEEEEecEEee---------CCeeE
Q 036371 124 LQNIRINGLLSL-NSQMFHIVINGCKDVHIEGVTVIAPG-NSPNTDGIHV-QLSTNAKIMNCTIKT---------GDDCI 191 (245)
Q Consensus 124 ~~nv~i~~v~i~-n~~~~~i~~~~~~~i~i~n~~i~~~~-~~~~~dGi~~-~~s~~v~I~n~~i~~---------~dD~i 191 (245)
|.|.+|.++--. ....+++.+...+||.|+|++|.... ..++-|+|.+ ..++||.|+.|++.. +|..+
T Consensus 100 ~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~ 179 (345)
T COG3866 100 GSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV 179 (345)
T ss_pred ccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence 555555544321 22356677777788888888888643 2344688988 678899999999875 46667
Q ss_pred EecCCCeeEEEEeeEEcCCc-eEEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 192 PIGPGTKNLWIERVTCGPAH-GISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 192 ~i~~~~~ni~i~n~~~~~~~-Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
-++.++..|+|.+|+|+... ++-+|+--....+.+-..|++++|.|.+..
T Consensus 180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccccccc
Confidence 78888999999999998754 677766532222244678999999998754
No 29
>smart00656 Amb_all Amb_all domain.
Probab=98.56 E-value=1.4e-06 Score=69.46 Aligned_cols=98 Identities=22% Similarity=0.300 Sum_probs=55.8
Q ss_pred EEEeCcccEEEEeEEEECCCC--CCCCCeeeccCeecEEEEecEEeeC----------CeeEEecCCCeeEEEEeeEEcC
Q 036371 142 IVINGCKDVHIEGVTVIAPGN--SPNTDGIHVQLSTNAKIMNCTIKTG----------DDCIPIGPGTKNLWIERVTCGP 209 (245)
Q Consensus 142 i~~~~~~~i~i~n~~i~~~~~--~~~~dGi~~~~s~~v~I~n~~i~~~----------dD~i~i~~~~~ni~i~n~~~~~ 209 (245)
+.+..++||.|+|++|+.... ....|+|.+..+++|.|+.|.+..+ |..+.++.++.+|+|++|+|..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 333344566666666665422 1245677776677777777777654 4445666667777777777764
Q ss_pred Cc-eEEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 210 AH-GISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 210 ~~-Gi~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
-+ ++-+|+--... .....+|++.+|.+.++
T Consensus 114 h~~~~liG~~d~~~-~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 114 HWKVMLLGHSDSDT-DDGKMRVTIAHNYFGNL 144 (190)
T ss_pred CCEEEEEccCCCcc-ccccceEEEECcEEcCc
Confidence 43 56665531111 11244667777766553
No 30
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.53 E-value=6.6e-06 Score=67.89 Aligned_cols=105 Identities=25% Similarity=0.208 Sum_probs=61.8
Q ss_pred EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEE
Q 036371 124 LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIE 203 (245)
Q Consensus 124 ~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~ 203 (245)
+.+++|++.++.+. .+++++..+.+++|+++.+... ..||.+..+.+.+|+++.+.....+|.+.. +.+.+|+
T Consensus 43 s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s~~~~I~ 115 (236)
T PF05048_consen 43 SDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG-SSNNTIS 115 (236)
T ss_pred cCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee-CCceEEE
Confidence 66666666666665 5666666666666666666663 356666666655666666665555665554 4456666
Q ss_pred eeEEcCC-ceEEEeccCcCCCCCCeEEEEEEeEEEECC-cccc
Q 036371 204 RVTCGPA-HGISIGSLGKDMNDEGVQNVTVIRTVFTGT-QNGL 244 (245)
Q Consensus 204 n~~~~~~-~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~-~~g~ 244 (245)
+|++... .||.+... .+.+|+++++.++ ..||
T Consensus 116 ~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi 149 (236)
T PF05048_consen 116 NNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGI 149 (236)
T ss_pred CcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccce
Confidence 6666532 35665221 3445556666655 4444
No 31
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.52 E-value=1.1e-05 Score=68.21 Aligned_cols=106 Identities=23% Similarity=0.283 Sum_probs=81.5
Q ss_pred cceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEE--EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEE
Q 036371 80 DNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ--LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTV 157 (245)
Q Consensus 80 ~~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~--~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i 157 (245)
+..+... ++++.++|.+..+.|..... -...+++. +..-.|+...+... .+++.+..+.++.|+..+|
T Consensus 69 G~~vtv~-aP~~~v~Gl~vr~sg~~lp~--------m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i 138 (408)
T COG3420 69 GSYVTVA-APDVIVEGLTVRGSGRSLPA--------MDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTI 138 (408)
T ss_pred ccEEEEe-CCCceeeeEEEecCCCCccc--------ccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEE
Confidence 3456665 89999999888887763221 11233333 66677777776644 5789999999999999999
Q ss_pred ECCCC---CCCCCeeeccCeecEEEEecEEeeCCeeEEecC
Q 036371 158 IAPGN---SPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGP 195 (245)
Q Consensus 158 ~~~~~---~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~ 195 (245)
....+ ....+||+++.+.+..|..+.++-++|||....
T Consensus 139 ~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~ 179 (408)
T COG3420 139 QGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT 179 (408)
T ss_pred eeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc
Confidence 98654 247789999999999999999999999998876
No 32
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.52 E-value=1.4e-06 Score=76.82 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=39.3
Q ss_pred EEEecEEEEeeEEecCC------CeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccCee
Q 036371 122 YQLQNIRINGLLSLNSQ------MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLST 175 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~------~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~ 175 (245)
+.+++++|++++|.++. ...|.+..|++++|+++++.... .-||+++.|+
T Consensus 112 i~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~ 167 (455)
T TIGR03808 112 EGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS 167 (455)
T ss_pred ecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc
Confidence 33899999999999864 44689999999999999999862 2455555555
No 33
>PLN02480 Probable pectinesterase
Probab=98.46 E-value=0.00012 Score=63.41 Aligned_cols=203 Identities=12% Similarity=0.066 Sum_probs=96.0
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCCc----EEEecCceeEEEeEEeeccCCCCCeEEEECC---EEEeeccccccCCCcce
Q 036371 10 GNGVADSTQAFAKAWAAACASTESA----TINVPKGRYLLGYVAFNGDCKSSDITFRIDG---TLVAPADYCVLGQADNW 82 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~~~g~----~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g---~l~~~~~~~~~~~~~~~ 82 (245)
.||. .|-.-||+||++| ..+. +|+|.+|+|. ..|.+... |. +++|.+++ ++..-.+...-...++.
T Consensus 54 ~~G~-g~f~TIQ~AIdaa---p~~~~~~~~I~Ik~GvY~-E~V~I~~~-kp-~ItL~G~g~~~TvI~~~~~~~~~~~saT 126 (343)
T PLN02480 54 INGK-GDFTSVQSAIDAV---PVGNSEWIIVHLRKGVYR-EKVHIPEN-KP-FIFMRGNGKGRTSIVWSQSSSDNAASAT 126 (343)
T ss_pred CCCC-CCcccHHHHHhhC---ccCCCceEEEEEcCcEEE-EEEEECCC-Cc-eEEEEecCCCCeEEEccccccCCCCceE
Confidence 3453 5688999999976 2333 4889999998 66667421 13 68887765 33211111000011233
Q ss_pred EEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEE--EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECC
Q 036371 83 LSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ--LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAP 160 (245)
Q Consensus 83 i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~--~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~ 160 (245)
+.+. ++++.+++.+|...- ..... .........+. .+.+.+++|+|.... -.+. .....--+++|.|...
T Consensus 127 vtV~-a~~f~a~nLTf~Nta----~~g~~-~~~~~QAVAl~v~gDra~f~~c~f~G~Q-DTLy-~~~gR~yf~~C~IeG~ 198 (343)
T PLN02480 127 FTVE-APHFVAFGISIRNDA----PTGMA-FTSENQSVAAFVGADKVAFYHCAFYSTH-NTLF-DYKGRHYYHSCYIQGS 198 (343)
T ss_pred EEEE-CCCEEEEeeEEEecC----CCCCC-CCCCCceEEEEecCCcEEEEeeEEeccc-ceeE-eCCCCEEEEeCEEEee
Confidence 4333 355555554443320 00000 00001122332 555555665554321 1111 2223444555555542
Q ss_pred CCCCCCCeeeccCeecEEEEecEEeeCC-------eeEEecC----CCeeEEEEeeEEcCCceEEEeccCcCCCCCCeEE
Q 036371 161 GNSPNTDGIHVQLSTNAKIMNCTIKTGD-------DCIPIGP----GTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQN 229 (245)
Q Consensus 161 ~~~~~~dGi~~~~s~~v~I~n~~i~~~d-------D~i~i~~----~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~n 229 (245)
.|- +.+.-..++++|+|..-. ..|+..+ ......|.||++.+..-+.+| .+ ......
T Consensus 199 -----VDF--IFG~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~g~~yLG---RP--W~~ya~ 266 (343)
T PLN02480 199 -----IDF--IFGRGRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGIGEVYLG---RA--KGAYSR 266 (343)
T ss_pred -----eeE--EccceeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEcccCceeee---cC--CCCcce
Confidence 221 133456677777776431 2233221 134677777777653333332 11 234667
Q ss_pred EEEEeEEEEC
Q 036371 230 VTVIRTVFTG 239 (245)
Q Consensus 230 i~i~n~~~~~ 239 (245)
++|.|+.|.+
T Consensus 267 vVf~~t~l~~ 276 (343)
T PLN02480 267 VIFAKTYLSK 276 (343)
T ss_pred EEEEecccCC
Confidence 7777777643
No 34
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.34 E-value=2.6e-06 Score=68.54 Aligned_cols=77 Identities=29% Similarity=0.400 Sum_probs=48.2
Q ss_pred CCCCeeeccCeecEEEEecEEeeC---------CeeEEecCCCeeEEEEeeEEcCCc-eEEEeccCcCCCCCCeEEEEEE
Q 036371 164 PNTDGIHVQLSTNAKIMNCTIKTG---------DDCIPIGPGTKNLWIERVTCGPAH-GISIGSLGKDMNDEGVQNVTVI 233 (245)
Q Consensus 164 ~~~dGi~~~~s~~v~I~n~~i~~~---------dD~i~i~~~~~ni~i~n~~~~~~~-Gi~igs~g~~~~~~~~~ni~i~ 233 (245)
...|+|.+..+++|.|+.|.+..+ |..+.++.++.+|+|++|.|.... +.-+|+.-....... .+|++.
T Consensus 73 ~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~h 151 (200)
T PF00544_consen 73 SDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFH 151 (200)
T ss_dssp CS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEE
T ss_pred cCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEE
Confidence 356788888888888888887654 555777777888888888887542 455665322211233 788888
Q ss_pred eEEEECCc
Q 036371 234 RTVFTGTQ 241 (245)
Q Consensus 234 n~~~~~~~ 241 (245)
+|.+.++.
T Consensus 152 hN~f~~~~ 159 (200)
T PF00544_consen 152 HNYFANTN 159 (200)
T ss_dssp S-EEEEEE
T ss_pred eEEECchh
Confidence 88886543
No 35
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=98.33 E-value=0.00016 Score=63.91 Aligned_cols=53 Identities=25% Similarity=0.174 Sum_probs=34.3
Q ss_pred cCCCCcchHHHHHHHHHHHhhcC--CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 9 KGNGVADSTQAFAKAWAAACAST--ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 9 ~~dg~tddt~Aiq~Ai~~a~~~~--~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
.+||.. |-.-||+||+++.... .-.+|+|.||+|.- .|.+... |. +++|.++|
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~E-kV~Ip~~-kp-~ItL~G~G 141 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQG-TVYVPAA-AP-PITLYGTG 141 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCceeEE-EEEeCCC-Cc-eEEEEecC
Confidence 455533 4778999999763321 23578899999984 4455321 24 88888764
No 36
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.23 E-value=0.00015 Score=60.61 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=90.5
Q ss_pred EEEECCEEEeeccccccCCCcceEEEcCeeceEEEc----cEEeCCCCcccccccCCCCCCCCceEEE-EecEEEEeeEE
Q 036371 60 TFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIG----GALDAKGSSLWACKASGTNCPDGATLYQ-LQNIRINGLLS 134 (245)
Q Consensus 60 ~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G----g~idG~g~~~w~~~~~~~~~~~~~~~~~-~~nv~i~~v~i 134 (245)
.|.+.|+|.++. ++. ..+.++.++|++|.| .++-|-| ..++ +.||.|++++|
T Consensus 78 ii~v~Gti~~s~-ps~-----~k~~iki~sNkTivG~g~~a~~~g~g-----------------l~i~~a~NVIirNltf 134 (345)
T COG3866 78 IIVVKGTITAST-PSD-----KKITIKIGSNKTIVGSGADATLVGGG-----------------LKIRDAGNVIIRNLTF 134 (345)
T ss_pred EEEEcceEeccC-CCC-----ceEEEeeccccEEEeeccccEEEece-----------------EEEEeCCcEEEEeeEE
Confidence 556667776542 100 125566677777777 2444432 2223 66777777777
Q ss_pred ecCC-----CeEEEE-eCcccEEEEeEEEECCCC---CCCCCe-eecc-CeecEEEEecEEeeCCeeEEecCC-------
Q 036371 135 LNSQ-----MFHIVI-NGCKDVHIEGVTVIAPGN---SPNTDG-IHVQ-LSTNAKIMNCTIKTGDDCIPIGPG------- 196 (245)
Q Consensus 135 ~n~~-----~~~i~~-~~~~~i~i~n~~i~~~~~---~~~~dG-i~~~-~s~~v~I~n~~i~~~dD~i~i~~~------- 196 (245)
...+ .-.|.+ ..+.++-|++|++..... ....|| +++. .+..|+|.+|.+...+-..-++..
T Consensus 135 ~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~ 214 (345)
T COG3866 135 EGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDD 214 (345)
T ss_pred EeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccC
Confidence 7665 345666 777888888888876321 113344 4443 356788888888766655555432
Q ss_pred -CeeEEEEeeEEcCC--c--eEEEeccCcCC-------------CCCCeEEEEEEeEEEECCcccc
Q 036371 197 -TKNLWIERVTCGPA--H--GISIGSLGKDM-------------NDEGVQNVTVIRTVFTGTQNGL 244 (245)
Q Consensus 197 -~~ni~i~n~~~~~~--~--Gi~igs~g~~~-------------~~~~~~ni~i~n~~~~~~~~g~ 244 (245)
-.+|++.+|.|.+. . -+.+|...-.. ..+.-.-|.+|++.|++.+.|+
T Consensus 215 ~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~ 280 (345)
T COG3866 215 GKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGL 280 (345)
T ss_pred CceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEeeccceEEEEecceeccCCCCc
Confidence 23466666655432 0 13332221111 1123357788999999876654
No 37
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.08 E-value=0.0002 Score=64.27 Aligned_cols=191 Identities=15% Similarity=0.152 Sum_probs=100.5
Q ss_pred CCcEEEecCceeEEEeEEeeccCCCCCeEEEECCEEEeeccc------cccCCC--------c--ceEE---EcCeeceE
Q 036371 32 ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADY------CVLGQA--------D--NWLS---FEGVSGVS 92 (245)
Q Consensus 32 ~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g~l~~~~~~------~~~~~~--------~--~~i~---~~~~~nv~ 92 (245)
...+|||.||-|.-+.+.+.+. ++ ++.+.+.|.|-...-. +.|... . .++. ..+..++.
T Consensus 255 n~~~VYlApGAyVkGAf~~~~~-~~-nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~ 332 (582)
T PF03718_consen 255 NTKWVYLAPGAYVKGAFEYTDT-QQ-NVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLT 332 (582)
T ss_dssp T--EEEE-TTEEEES-EEE----SS-EEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEE
T ss_pred CccEEEEcCCcEEEEEEEEccC-Cc-eEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEE
Confidence 4679999999999998877633 24 7888888888753211 112100 0 1122 23345677
Q ss_pred EEccEEeCCCCcccccccCCCCCCCCceEEE--Ee---cEEEEeeEEecCCCeEE-EEeCcccEEEEeEEEECCCCCCCC
Q 036371 93 IIGGALDAKGSSLWACKASGTNCPDGATLYQ--LQ---NIRINGLLSLNSQMFHI-VINGCKDVHIEGVTVIAPGNSPNT 166 (245)
Q Consensus 93 I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~--~~---nv~i~~v~i~n~~~~~i-~~~~~~~i~i~n~~i~~~~~~~~~ 166 (245)
+.|-+|... |...+.++ +. ...|++.+...+.+|.- -+.-+.+-+|+||.++. +.
T Consensus 333 ~~GiTI~~p--------------P~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~-----nD 393 (582)
T PF03718_consen 333 CEGITINDP--------------PFHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV-----ND 393 (582)
T ss_dssp EES-EEE----------------SS-SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEEEEEE-----SS
T ss_pred EEeeEecCC--------------CcceEEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeeeEEEe-----cC
Confidence 777555432 23345555 43 57899999988766642 13334677889999998 67
Q ss_pred CeeeccCeecEEEEecEEeeCCe--eEEecC---CCeeEEEEeeEEcC----------CceEEEeccC-----cCCC---
Q 036371 167 DGIHVQLSTNAKIMNCTIKTGDD--CIPIGP---GTKNLWIERVTCGP----------AHGISIGSLG-----KDMN--- 223 (245)
Q Consensus 167 dGi~~~~s~~v~I~n~~i~~~dD--~i~i~~---~~~ni~i~n~~~~~----------~~Gi~igs~g-----~~~~--- 223 (245)
|+|.+.. +++.|++|++-..+. .|-++- ..++|.|+|+.+-. ..+|---|.. ....
T Consensus 394 D~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp 472 (582)
T PF03718_consen 394 DAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADP 472 (582)
T ss_dssp -SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEE
T ss_pred chhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCc
Confidence 8998887 699999999975332 222221 25788888887631 1232211111 1110
Q ss_pred CCCeEEEEEEeEEEECCcccc
Q 036371 224 DEGVQNVTVIRTVFTGTQNGL 244 (245)
Q Consensus 224 ~~~~~ni~i~n~~~~~~~~g~ 244 (245)
...|++++|+|+++++.-.++
T Consensus 473 ~~ti~~~~~~nv~~EG~~~~l 493 (582)
T PF03718_consen 473 STTIRNMTFSNVRCEGMCPCL 493 (582)
T ss_dssp EEEEEEEEEEEEEEECCE-EC
T ss_pred ccceeeEEEEeEEEeccccee
Confidence 123689999999999876655
No 38
>PLN02665 pectinesterase family protein
Probab=98.07 E-value=0.0033 Score=54.97 Aligned_cols=206 Identities=12% Similarity=0.043 Sum_probs=99.3
Q ss_pred CCCCcchHHHHHHHHHHHhhcC-CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC----EEEeeccccccCC-CcceE
Q 036371 10 GNGVADSTQAFAKAWAAACAST-ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG----TLVAPADYCVLGQ-ADNWL 83 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g----~l~~~~~~~~~~~-~~~~i 83 (245)
.||.. |-.-||+||+++-+.+ .-.+|+|.||+|. ..|.+... |. +++|.+++ .|........+.. .++.+
T Consensus 74 ~dG~G-df~TIq~AIdaiP~~~~~r~vI~Ik~GvY~-EkV~Ip~~-kp-~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv 149 (366)
T PLN02665 74 KDGSG-DFKTITDAIKSIPAGNTQRVIIDIGPGEYN-EKITIDRS-KP-FVTLYGSPGAMPTLTFDGTAAKYGTVYSATL 149 (366)
T ss_pred CCCCC-CccCHHHHHhhCcccCCceEEEEEeCcEEE-EEEEecCC-CC-EEEEEecCCCCCEEEECCccCCCCCcceEEE
Confidence 34533 4778999999763221 2347889999998 45555321 23 78888874 3332211111111 12223
Q ss_pred EEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEE--EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCC
Q 036371 84 SFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ--LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPG 161 (245)
Q Consensus 84 ~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~--~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~ 161 (245)
.+. ++++..++-+|...-. .... .........++ .+...+.+|+|... +-.+. .....--+++|.|...
T Consensus 150 ~v~-a~~F~a~nitf~Nta~--~~~~---~~~g~QAVAl~v~gDka~f~~C~f~G~-QDTL~-~~~gr~yf~~CyIeG~- 220 (366)
T PLN02665 150 IVE-SDYFMAANIIIKNSAP--RPDG---KRKGAQAVAMRISGDKAAFYNCRFIGF-QDTLC-DDKGRHFFKDCYIEGT- 220 (366)
T ss_pred EEE-CCCeEEEeeEEEeCCC--CcCC---CCCCcceEEEEEcCCcEEEEcceeccc-cceeE-eCCCCEEEEeeEEeec-
Confidence 222 3444444433332100 0000 00001122333 55566666666532 22222 2223455566666652
Q ss_pred CCCCCCeeeccCeecEEEEecEEeeCCe----eEEecC-----CCeeEEEEeeEEcCCc-eEEEeccCcCCCCCCeEEEE
Q 036371 162 NSPNTDGIHVQLSTNAKIMNCTIKTGDD----CIPIGP-----GTKNLWIERVTCGPAH-GISIGSLGKDMNDEGVQNVT 231 (245)
Q Consensus 162 ~~~~~dGi~~~~s~~v~I~n~~i~~~dD----~i~i~~-----~~~ni~i~n~~~~~~~-Gi~igs~g~~~~~~~~~ni~ 231 (245)
.|-| .+.-....++|+|..-.+ .|+..+ ......+.||++.+.. .+.+| .. ......++
T Consensus 221 ----VDFI--FG~g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLG---Rp--W~~ysrvV 289 (366)
T PLN02665 221 ----VDFI--FGSGKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLG---RA--WMSRPRVV 289 (366)
T ss_pred ----ccee--ccccceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceeec---CC--CCCcceEE
Confidence 2321 233466777777764322 343321 1356788888887643 34432 11 23456778
Q ss_pred EEeEEEEC
Q 036371 232 VIRTVFTG 239 (245)
Q Consensus 232 i~n~~~~~ 239 (245)
|.|+.|.+
T Consensus 290 f~~t~m~~ 297 (366)
T PLN02665 290 FAYTEMSS 297 (366)
T ss_pred EEccccCC
Confidence 88777764
No 39
>PLN02176 putative pectinesterase
Probab=98.06 E-value=0.0034 Score=54.30 Aligned_cols=206 Identities=14% Similarity=0.055 Sum_probs=101.8
Q ss_pred CCCCcchHHHHHHHHHHHhhcC-CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC---EEEeeccccccCCCcceEEE
Q 036371 10 GNGVADSTQAFAKAWAAACAST-ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG---TLVAPADYCVLGQADNWLSF 85 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g---~l~~~~~~~~~~~~~~~i~~ 85 (245)
.||. -|-.-||+||+++-... ..-+|+|++|+|.- .|.+... |. +++|.++| ++..-.+. .....++-+..
T Consensus 45 ~dGs-Gdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~E-kV~Ip~~-k~-~vtl~G~g~~~TiIt~~~~-~~t~~saT~~v 119 (340)
T PLN02176 45 PNDA-RYFKTVQSAIDSIPLQNQNWIRILIQNGIYRE-KVTIPKE-KG-YIYMQGKGIEKTIIAYGDH-QATDTSATFTS 119 (340)
T ss_pred CCCC-CCccCHHHHHhhchhcCCceEEEEECCcEEEE-EEEECCC-Cc-cEEEEEcCCCceEEEEeCC-cccccceEEEE
Confidence 3553 34788999999763222 23468899999984 4555321 24 89998885 33321111 11111223333
Q ss_pred cCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEE--EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCCCC
Q 036371 86 EGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ--LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNS 163 (245)
Q Consensus 86 ~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~--~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~~~ 163 (245)
. ++++..++.+|...-.. .............++ .+...+.+|+|... +-.+. .....-.+++|.|...
T Consensus 120 ~-a~~F~a~nlT~~Nt~~~----~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~-QDTLy-~~~gRqyf~~CyIeG~--- 189 (340)
T PLN02176 120 Y-ASNIIITGITFKNTYNI----ASNSSRPTKPAVAARMLGDKYAIIDSSFDGF-QDTLF-DGKGRHYYKRCVISGG--- 189 (340)
T ss_pred E-CCCEEEEeeEEEeCCCc----cCCCCCCccceEEEEecCccEEEEccEEecc-cceeE-eCCcCEEEEecEEEec---
Confidence 2 45555555443322100 000000011123333 66677777777632 22222 2334566667777663
Q ss_pred CCCCeeeccCeecEEEEecEEeeCC---------eeEEecC-----CCeeEEEEeeEEcCCceEEEeccCcCCCCCCeEE
Q 036371 164 PNTDGIHVQLSTNAKIMNCTIKTGD---------DCIPIGP-----GTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQN 229 (245)
Q Consensus 164 ~~~dGi~~~~s~~v~I~n~~i~~~d---------D~i~i~~-----~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~n 229 (245)
.|-| .+.-..++++|.|..-+ ..|...+ ......|.||++.+..-..+| .+ ......
T Consensus 190 --VDFI--FG~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g~~yLG---RP--W~~yar 260 (340)
T PLN02176 190 --IDFI--FGYAQSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFKDCTVTGVGKALLG---RA--WGSYAR 260 (340)
T ss_pred --ccEE--ecCceEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEECCEEccCcceeee---cC--CCCCce
Confidence 3322 23346777777776421 2233311 134678888887753323332 11 234567
Q ss_pred EEEEeEEEEC
Q 036371 230 VTVIRTVFTG 239 (245)
Q Consensus 230 i~i~n~~~~~ 239 (245)
++|.|+.|.+
T Consensus 261 vVf~~t~m~~ 270 (340)
T PLN02176 261 VIFYRSRFSD 270 (340)
T ss_pred EEEEecCcCC
Confidence 7777776654
No 40
>PLN02682 pectinesterase family protein
Probab=98.05 E-value=0.00074 Score=58.92 Aligned_cols=48 Identities=21% Similarity=0.121 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHhhcC-CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 15 DSTQAFAKAWAAACAST-ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 15 ddt~Aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
-|-.-||+||+++-+.+ ...+|+|.||+|.- .|.+... |. +++|.++|
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~E-kV~Ip~~-k~-~Itl~G~g 128 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAGTYRE-KVNIPPL-KA-YITLEGAG 128 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCceeeE-EEEEecc-Cc-eEEEEecC
Confidence 35778999999763222 23578999999973 4455311 24 88888875
No 41
>PLN02773 pectinesterase
Probab=98.05 E-value=0.0021 Score=55.16 Aligned_cols=52 Identities=21% Similarity=0.090 Sum_probs=33.9
Q ss_pred CCCCcchHHHHHHHHHHHhhcC-CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 10 GNGVADSTQAFAKAWAAACAST-ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
.||.. |-.-||+||+++-+.. .--+|+|.||+|. ..|.+... |. +++|.+++
T Consensus 11 ~dGsG-df~TIq~Aida~P~~~~~~~~I~Ik~G~Y~-E~V~I~~~-k~-~itl~G~~ 63 (317)
T PLN02773 11 QDGSG-DYCTVQDAIDAVPLCNRCRTVIRVAPGVYR-QPVYVPKT-KN-LITLAGLS 63 (317)
T ss_pred CCCCC-CccCHHHHHhhchhcCCceEEEEEeCceEE-EEEEECcC-Cc-cEEEEeCC
Confidence 34533 3778999999763322 2357889999998 45556421 13 78887764
No 42
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.98 E-value=0.0015 Score=59.53 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=33.9
Q ss_pred CCCCcchHHHHHHHHHHHhh--cCCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 10 GNGVADSTQAFAKAWAAACA--STESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~--~~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
.||. -|-.-||+||+++.. ....-+|+|.||+|. ..|.+... |. +++|.++|
T Consensus 231 ~dGs-G~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~-nItl~G~g 284 (529)
T PLN02170 231 ADGS-GTHKTIGEALLSTSLESGGGRTVIYLKAGTYH-ENLNIPTK-QK-NVMLVGDG 284 (529)
T ss_pred CCCC-CchhhHHHHHHhcccccCCceEEEEEeCCeeE-EEEecCCC-Cc-eEEEEEcC
Confidence 3553 347889999986522 123468999999997 34555321 24 88887775
No 43
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.97 E-value=9.6e-05 Score=60.62 Aligned_cols=113 Identities=18% Similarity=0.257 Sum_probs=63.5
Q ss_pred EcCeeceEEEccEEeCCCCcccccccCC-CCC--CCCceEEEEecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCC
Q 036371 85 FEGVSGVSIIGGALDAKGSSLWACKASG-TNC--PDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPG 161 (245)
Q Consensus 85 ~~~~~nv~I~Gg~idG~g~~~w~~~~~~-~~~--~~~~~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~ 161 (245)
|..++++.|++-.+.-..+..|.+..-. .+. ...=.+|.++|+.++++.+..- -.++.|+|+.|+|.++.+.+
T Consensus 94 fR~~~~i~L~nv~~~~A~Et~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~Gn----Y~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADETLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGN----YSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred hhcccCcEEEeeEeCCCcccCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCC----EEeeceeeEEEEccEEeccc
Confidence 4457777777766644445556543210 000 0011233477777777776432 35678888888888888752
Q ss_pred CCCCCCeeeccCeecEEEEecEEeeCC-----eeEEe-----cC-----CCeeEEEEeeEEcC
Q 036371 162 NSPNTDGIHVQLSTNAKIMNCTIKTGD-----DCIPI-----GP-----GTKNLWIERVTCGP 209 (245)
Q Consensus 162 ~~~~~dGi~~~~s~~v~I~n~~i~~~d-----D~i~i-----~~-----~~~ni~i~n~~~~~ 209 (245)
.++.|+||+|.|+++.+.- ..+.+ .+ ..+|++++||++..
T Consensus 170 --------AFWn~eNVtVyDS~i~GEYLgW~SkNltliNC~I~g~QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 170 --------AFWNCENVTVYDSVINGEYLGWNSKNLTLINCTIEGTQPLCYCDNLVLENCTMID 224 (277)
T ss_pred --------ccccCCceEEEcceEeeeEEEEEcCCeEEEEeEEeccCccEeecceEEeCcEeec
Confidence 2355666666666665310 11211 11 16799999998763
No 44
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.95 E-value=0.0015 Score=60.28 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=33.6
Q ss_pred CCCcchHHHHHHHHHHHhhc--CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 11 NGVADSTQAFAKAWAAACAS--TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 11 dg~tddt~Aiq~Ai~~a~~~--~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
||. -+-.-||+||+++-.. ..-.+|+|.+|+|.- .|.+... |. +++|.++|
T Consensus 248 dGs-g~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E-~V~i~~~-k~-~v~l~G~g 300 (553)
T PLN02708 248 DGN-CCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEE-TVRVPLE-KK-NVVFLGDG 300 (553)
T ss_pred CCC-CCccCHHHHHHhhhhccCCccEEEEEeCceEEe-eeeecCC-Cc-cEEEEecC
Confidence 443 3477899999977331 234589999999984 4444321 23 88888876
No 45
>PLN02916 pectinesterase family protein
Probab=97.91 E-value=0.0019 Score=58.64 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=33.6
Q ss_pred CCCCcchHHHHHHHHHHHhh----cCCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 10 GNGVADSTQAFAKAWAAACA----STESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~----~~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
.||. -|-.-||+||+++.+ +...-+|+|.||+|.- .+.+... |. +++|.++|
T Consensus 193 ~dGs-G~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-~i~l~G~g 248 (502)
T PLN02916 193 RDGS-GTHRTINQALAALSRMGKSRTNRVIIYVKAGVYNE-KVEIDRH-MK-NVMFVGDG 248 (502)
T ss_pred CCCC-CCccCHHHHHHhcccccCCCCceEEEEEeCceeeE-EEEecCC-Cc-eEEEEecC
Confidence 3443 346789999987632 1123589999999984 5555421 23 78888776
No 46
>PLN02634 probable pectinesterase
Probab=97.89 E-value=0.0033 Score=54.68 Aligned_cols=52 Identities=29% Similarity=0.291 Sum_probs=33.7
Q ss_pred CCCCcchHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 10 GNGVADSTQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
.||. -|-.-||+||+++-.. ....+|+|-||+|.- .|.+... |. +++|.++|
T Consensus 62 ~dGs-Gdf~TIQaAIda~P~~~~~r~vI~Ik~GvY~E-kV~Ip~~-k~-~ItL~G~g 114 (359)
T PLN02634 62 ANGH-GDFRSVQDAVDSVPKNNTMSVTIKINAGFYRE-KVVVPAT-KP-YITFQGAG 114 (359)
T ss_pred CCCC-CCccCHHHHHhhCcccCCccEEEEEeCceEEE-EEEEcCC-CC-eEEEEecC
Confidence 3453 3578899999976221 123578999999984 4444311 24 88888875
No 47
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.88 E-value=0.0016 Score=60.24 Aligned_cols=52 Identities=29% Similarity=0.288 Sum_probs=33.3
Q ss_pred CCCCcchHHHHHHHHHHHhhc----CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 10 GNGVADSTQAFAKAWAAACAS----TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~----~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
.||. -|-.-||+||+++-.. ..--+|+|.+|+|.- .|.+... |. +++|.++|
T Consensus 256 ~dGs-G~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~E-~V~i~~~-k~-~i~l~G~g 311 (566)
T PLN02713 256 QNGT-GNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEE-YVSIPKN-KK-YLMMIGDG 311 (566)
T ss_pred CCCC-CCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEEE-EEEecCC-Cc-eEEEEecC
Confidence 3443 3477899999876221 112579999999984 4555321 23 78887776
No 48
>PLN02432 putative pectinesterase
Probab=97.86 E-value=0.01 Score=50.44 Aligned_cols=52 Identities=23% Similarity=0.149 Sum_probs=32.9
Q ss_pred CCCCcchHHHHHHHHHHHhhcC-CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 10 GNGVADSTQAFAKAWAAACAST-ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
.||.. |-.-||+||+++.+.. ...+|+|.||+|.- .|.+... |. +++|.+++
T Consensus 17 ~~Gsg-~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~E-~V~ip~~-k~-~itl~G~~ 69 (293)
T PLN02432 17 QSGKG-DFRKIQDAIDAVPSNNSQLVFIWVKPGIYRE-KVVVPAD-KP-FITLSGTQ 69 (293)
T ss_pred CCCCC-CccCHHHHHhhccccCCceEEEEEeCceeEE-EEEEecc-Cc-eEEEEEcC
Confidence 34433 4788999999763222 23578899999954 4444211 23 78887764
No 49
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.85 E-value=0.0024 Score=58.73 Aligned_cols=134 Identities=17% Similarity=0.143 Sum_probs=71.8
Q ss_pred CCCCcchHHHHHHHHHHHhhcC----CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC---EEEeeccccccCCCcce
Q 036371 10 GNGVADSTQAFAKAWAAACAST----ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG---TLVAPADYCVLGQADNW 82 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~~----~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g---~l~~~~~~~~~~~~~~~ 82 (245)
.||. -+-.-||+||+++-... .--+|+|.+|+|.- .|.+... |. +++|.++| ++.
T Consensus 229 ~dGs-G~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~E-~V~i~~~-k~-~i~l~G~g~~~tiI-------------- 290 (538)
T PLN03043 229 PYGT-DNFTTITDAIAAAPNNSKPEDGYFVIYAREGYYEE-YVVVPKN-KK-NIMLIGDGINKTII-------------- 290 (538)
T ss_pred CCCC-CCCcCHHHHHHhccccCCCCcceEEEEEcCeeeEE-EEEeCCC-CC-cEEEEecCCCCeEE--------------
Confidence 3553 34778999998762211 12489999999974 4555321 23 78887776 221
Q ss_pred EEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEEEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEE
Q 036371 83 LSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTV 157 (245)
Q Consensus 83 i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i 157 (245)
... .++ .|| |... ......+..+++..++++|+|.... .+ .-..++...+.+|.|
T Consensus 291 -t~~--~~~------~dg-----~~T~------~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~ 350 (538)
T PLN03043 291 -TGN--HSV------VDG-----WTTF------NSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSF 350 (538)
T ss_pred -EeC--Ccc------CCC-----Cccc------cceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEE
Confidence 111 000 111 1100 0112233377888888888876432 22 233457788888888
Q ss_pred ECCCCCCCCCeeeccCeecEEEEecEEeeC
Q 036371 158 IAPGNSPNTDGIHVQLSTNAKIMNCTIKTG 187 (245)
Q Consensus 158 ~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~ 187 (245)
.+..|....+ . ..-..++|+|.+.
T Consensus 351 ~gyQDTLy~~-----~-~rq~y~~c~I~Gt 374 (538)
T PLN03043 351 EGYQDTLYVH-----S-LRQFYRECDIYGT 374 (538)
T ss_pred eccCcccccC-----C-CcEEEEeeEEeec
Confidence 8865433222 1 2345555555543
No 50
>PLN02671 pectinesterase
Probab=97.84 E-value=0.0041 Score=54.14 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=33.3
Q ss_pred CCCCcchHHHHHHHHHHHhhcC-CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 10 GNGVADSTQAFAKAWAAACAST-ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
.||. -|-.-||+||+++.+.. ...+|+|.||+|.- .|.+... |. +++|.++|
T Consensus 65 ~dGs-Gdf~TIQ~AIdavP~~~~~~~~I~Ik~GvY~E-kV~I~~~-k~-~Itl~G~g 117 (359)
T PLN02671 65 KNGG-GDSLTVQGAVDMVPDYNSQRVKIYILPGIYRE-KVLVPKS-KP-YISFIGNE 117 (359)
T ss_pred CCCC-CCccCHHHHHHhchhcCCccEEEEEeCceEEE-EEEECCC-CC-eEEEEecC
Confidence 3453 34778999999763322 24589999999984 4445311 23 77887764
No 51
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.84 E-value=0.0047 Score=57.43 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=35.0
Q ss_pred CCCcchHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 11 NGVADSTQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 11 dg~tddt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
||.. |-.-||+||+++-.. ...-+|+|.+|+|.-..|.+... |. +++|.++|
T Consensus 279 dGsG-~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~-k~-ni~l~G~g 331 (587)
T PLN02484 279 DGNG-TFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRK-KT-NLMFIGDG 331 (587)
T ss_pred CCCC-CcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCC-Cc-eEEEEecC
Confidence 4432 477899999876322 12468899999998765666422 23 78887775
No 52
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.84 E-value=2.2e-05 Score=49.35 Aligned_cols=41 Identities=29% Similarity=0.308 Sum_probs=23.6
Q ss_pred ccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCceeEEEeEEee
Q 036371 8 AKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFN 51 (245)
Q Consensus 8 a~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~ 51 (245)
|+|||+||||+||.+||++. +.|.+|---.=||.+++|.-.
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~~IDg~GlTykVs~lPd~ 41 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGRKIDGAGLTYKVSSLPDI 41 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS---G
T ss_pred CCCccccCcHHHHHHHHhcc---CCCeEEecCCceEEEeeCccH
Confidence 78999999999999999753 455555443347999887544
No 53
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.82 E-value=0.0043 Score=54.15 Aligned_cols=144 Identities=13% Similarity=0.147 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhcCCCcEEEecCce-eEEE-eEEeeccCCCCCeEEEECC-EEEeeccccccCCCcceEEEcCeeceEEEc
Q 036371 19 AFAKAWAAACASTESATINVPKGR-YLLG-YVAFNGDCKSSDITFRIDG-TLVAPADYCVLGQADNWLSFEGVSGVSIIG 95 (245)
Q Consensus 19 Aiq~Ai~~a~~~~~g~~v~ip~G~-Y~~~-~l~l~~~~~s~~~~l~~~g-~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G 95 (245)
.+..||+. -++|.+-||. |.+. ++.++ + ...|.+.| +++.. .+.. ..|....
T Consensus 56 Dle~~I~~------haKVaL~Pg~~Y~i~~~V~I~----~-~cYIiGnGA~V~v~-~~~~-----~~f~v~~-------- 110 (386)
T PF01696_consen 56 DLEEAIRQ------HAKVALRPGAVYVIRKPVNIR----S-CCYIIGNGATVRVN-GPDR-----VAFRVCM-------- 110 (386)
T ss_pred CHHHHHHh------cCEEEeCCCCEEEEeeeEEec----c-eEEEECCCEEEEEe-CCCC-----ceEEEEc--------
Confidence 35666653 3688888885 9875 78888 4 67777777 33321 1100 0011110
Q ss_pred cEEeCCCCcccccccCCCCCCCCceEEEEecEEEEeeEEecCC-CeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccCe
Q 036371 96 GALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQ-MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLS 174 (245)
Q Consensus 96 g~idG~g~~~w~~~~~~~~~~~~~~~~~~~nv~i~~v~i~n~~-~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s 174 (245)
. ...|.++...++++.|+.|...+ .-++.+....++++.+|.+.+. ....++.+
T Consensus 111 -----~--------------~~~P~V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~g~cl~~~-- 165 (386)
T PF01696_consen 111 -----Q--------------SMGPGVVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----HGTCLESW-- 165 (386)
T ss_pred -----C--------------CCCCeEeeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----cceeEEEc--
Confidence 0 11244445667777777777655 5556666667777777777764 23334333
Q ss_pred ecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCCc-eE
Q 036371 175 TNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAH-GI 213 (245)
Q Consensus 175 ~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~-Gi 213 (245)
....|++|.+..-.-+| ...+...+.|++|+|.... ||
T Consensus 166 ~~~~VrGC~F~~C~~gi-~~~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 166 AGGEVRGCTFYGCWKGI-VSRGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred CCcEEeeeEEEEEEEEe-ecCCcceEEeeheeeeheEEEE
Confidence 35667777765543333 2223456666666666654 55
No 54
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.82 E-value=0.0056 Score=56.01 Aligned_cols=47 Identities=28% Similarity=0.295 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 16 STQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 16 dt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
+-.-||+||+++-.. ..--+|+|.||+|. ..|.+... |. +++|.++|
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~-~itl~G~g 276 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGGEYF-ENVELPKK-KT-MIMFIGDG 276 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCceEE-EEEEecCC-Cc-eEEEEEcC
Confidence 477899999876322 12458999999998 46666422 23 78888775
No 55
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.82 E-value=0.0031 Score=57.99 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=79.7
Q ss_pred CCCCcchHHHHHHHHHHHhhcC-CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC---EEEeeccccccCCCcceEEE
Q 036371 10 GNGVADSTQAFAKAWAAACAST-ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG---TLVAPADYCVLGQADNWLSF 85 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g---~l~~~~~~~~~~~~~~~i~~ 85 (245)
.||. -|-.-||+||+++-... ..-+|+|.+|+|.- .|.+... |. +++|.++| ++.. .
T Consensus 236 ~dGs-G~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~E-~V~i~~~-k~-~i~l~G~g~~~TiIt---------------~ 296 (541)
T PLN02416 236 ADGT-GNFSTITDAINFAPNNSNDRIIIYVREGVYEE-NVEIPIY-KT-NIVLIGDGSDVTFIT---------------G 296 (541)
T ss_pred CCCC-CCccCHHHHHHhhhhcCCceEEEEEeCceeEE-EEecCCC-Cc-cEEEEecCCCceEEe---------------C
Confidence 3443 34778999998763322 23578899999974 4555321 23 78887776 2221 1
Q ss_pred cCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEEEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECC
Q 036371 86 EGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAP 160 (245)
Q Consensus 86 ~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~ 160 (245)
. .++ .+| |... ......+..+++..+|++|+|.... .+ ....++...+.+|.|.+.
T Consensus 297 ~--~~~------~~g-----~~T~------~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~ 357 (541)
T PLN02416 297 N--RSV------VDG-----WTTF------RSATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGY 357 (541)
T ss_pred C--Ccc------CCC-----CCcc------ceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecc
Confidence 0 000 011 1000 0011223367777788888776432 11 123457788888888876
Q ss_pred CCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEc
Q 036371 161 GNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCG 208 (245)
Q Consensus 161 ~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~ 208 (245)
.|....+ +.....++|+|.+.=|-| .|.-...++||++.
T Consensus 358 QDTLy~~------~~Rqyy~~C~I~GtVDFI---FG~a~avfq~c~i~ 396 (541)
T PLN02416 358 QDTLYVH------SFRQFYRECDIYGTIDYI---FGNAAVVFQACNIV 396 (541)
T ss_pred cchhccC------CCceEEEeeEEeecccee---eccceEEEeccEEE
Confidence 5443322 234466666666543321 22335666666664
No 56
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.81 E-value=0.0031 Score=53.91 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHhhcC-CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 15 DSTQAFAKAWAAACAST-ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 15 ddt~Aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
-|-.-||+||+++.... ..-+|+|.||+|.- .|.+... |. +++|.+++
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G~Y~E-~V~i~~~-k~-~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPGTYRE-KVTIPRS-KP-NVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SEEEE---EEE-ST-ST-TEEEEES-
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCeeEcc-ccEeccc-cc-eEEEEecC
Confidence 45778999999763211 23589999999984 4555521 13 78887774
No 57
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.80 E-value=0.0035 Score=58.27 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 16 STQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 16 dt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
|-.-||+||+++-.. ...-+|+|.+|+|.- .|.+... |. +++|.++|
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-~i~l~G~g 343 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQGIYDE-TVTVDKK-MV-NVTMYGDG 343 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCCeeEE-EEEEcCC-Cc-eEEEEecC
Confidence 578899999876322 124578999999984 4555422 23 78888776
No 58
>smart00656 Amb_all Amb_all domain.
Probab=97.79 E-value=0.0017 Score=51.80 Aligned_cols=35 Identities=9% Similarity=-0.034 Sum_probs=17.1
Q ss_pred eEEEEeeEEcCCceEEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 199 NLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 199 ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
.+.+-||.+.+.++.+++.- .-..+.+|++.|++.
T Consensus 155 ~~hv~NN~~~n~~~~~~~~~-------~~~~v~~E~N~F~~~ 189 (190)
T smart00656 155 YVHVYNNYYTGWTSYAIGGR-------MGATILSEGNYFEAP 189 (190)
T ss_pred EEEEEeeEEeCcccEeEecC-------CCcEEEEECeEEECC
Confidence 45555555554333333221 122566777776654
No 59
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.79 E-value=0.004 Score=57.68 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 16 STQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 16 dt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
+-.-||+||+++-.. ...-+|+|.||+|.- .+.+... |. +++|.++|
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~E-~V~i~~~-k~-~i~~~G~g 316 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKGVYFE-NVRVEKK-KW-NVVMVGDG 316 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCceEE-EEEecCC-CC-eEEEEecC
Confidence 467899999876322 234689999999984 5555321 23 78887775
No 60
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.77 E-value=0.0043 Score=57.69 Aligned_cols=47 Identities=30% Similarity=0.295 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 16 STQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 16 dt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
|-.-||+||+++-.. ...-+|+|.+|+|.- .+.+... |. +++|.++|
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~E-~V~i~~~-k~-ni~l~Gdg 333 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAGVYRE-NVEVTKK-KK-NIMFLGDG 333 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCceeEE-EEEeCCC-CC-eEEEEecC
Confidence 577899999876322 234589999999985 4444321 23 77777775
No 61
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.76 E-value=0.006 Score=55.26 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=33.9
Q ss_pred CCCcchHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 11 NGVADSTQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 11 dg~tddt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
|| .-+-.-||+||+++-+. ..--+|+|.+|+|.- .|.+... |. +++|.++|
T Consensus 204 dG-sG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-nItliGdg 255 (509)
T PLN02488 204 DG-SGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDE-IVRIGST-KP-NLTLIGDG 255 (509)
T ss_pred CC-CCCccCHHHHHHhchhcCCCcEEEEEeCCeeEE-EEEecCC-Cc-cEEEEecC
Confidence 44 34577899999876322 224589999999984 4555321 24 88888876
No 62
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.75 E-value=0.0042 Score=56.75 Aligned_cols=52 Identities=29% Similarity=0.296 Sum_probs=34.3
Q ss_pred CCCCcchHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 10 GNGVADSTQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
.||. -|-.-||+||+++-.. ...-+|+|.+|+|.- .|.+... |. +++|.++|
T Consensus 212 ~dGs-G~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-~i~l~G~g 264 (520)
T PLN02201 212 ADGT-GNFTTIMDAVLAAPDYSTKRYVIYIKKGVYLE-NVEIKKK-KW-NIMMVGDG 264 (520)
T ss_pred CCCC-CCccCHHHHHHhchhcCCCcEEEEEeCceeEE-EEEecCC-Cc-eEEEEecC
Confidence 3453 3578899999876321 234689999999973 4555422 23 78887775
No 63
>PLN02197 pectinesterase
Probab=97.74 E-value=0.0049 Score=57.18 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhhcC-CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 16 STQAFAKAWAAACAST-ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 16 dt~Aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
|-.-||+||+++-... .--+|+|.+|+|.- .+.+... |. +++|.++|
T Consensus 286 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-ni~l~G~g 333 (588)
T PLN02197 286 QFKTISQAVMACPDKNPGRCIIHIKAGIYNE-QVTIPKK-KN-NIFMFGDG 333 (588)
T ss_pred CcCCHHHHHHhccccCCceEEEEEeCceEEE-EEEccCC-Cc-eEEEEEcC
Confidence 4778999998763222 23478999999984 4445321 23 78887775
No 64
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.72 E-value=0.0062 Score=57.17 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 16 STQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 16 dt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
|-.-||+||+++-.. ..--+|+|.+|+|.- .|.+... |. +++|.++|
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-~i~l~Gdg 308 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAGIYKE-YVQVNRS-MT-HLVFIGDG 308 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCCceEE-EEEEcCC-CC-cEEEEecC
Confidence 477899999876221 124579999999976 4445321 23 77777765
No 65
>PLN02314 pectinesterase
Probab=97.71 E-value=0.0048 Score=57.42 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 16 STQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 16 dt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
|-.-||+||+++-+. ..--+|+|.+|+|.- .+.+... |. +++|.++|
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~E-~V~i~~~-k~-~i~l~G~g 336 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEGTYVE-NVLLDKS-KW-NVMIYGDG 336 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCceEEE-EEEecCC-Cc-eEEEEecC
Confidence 466799999876221 124579999999984 4445321 23 78887775
No 66
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.71 E-value=0.0065 Score=55.93 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhhcC-CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 16 STQAFAKAWAAACAST-ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 16 dt~Aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
|-.-||+||+++-+.. ..-+|+|.+|+|.- .|.+... |. +++|.++|
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E-~V~i~~~-k~-~i~l~G~g 294 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKGTYKE-NVEIGKK-KK-NLMLVGDG 294 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCceeeE-EEEecCC-Cc-eEEEEecC
Confidence 4788999998763322 23589999999974 4555321 23 78887776
No 67
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.68 E-value=0.0051 Score=56.58 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=33.8
Q ss_pred CCCcchHHHHHHHHHHHhh---cCCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 11 NGVADSTQAFAKAWAAACA---STESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 11 dg~tddt~Aiq~Ai~~a~~---~~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
||. -|-.-||+||+++-+ +....+|+|.+|+|.-. |.+... |. +++|.++|
T Consensus 230 dGs-G~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~~-k~-~i~l~G~g 283 (539)
T PLN02995 230 DGS-GHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQEN-INVRLN-ND-DIMLVGDG 283 (539)
T ss_pred CCC-CCccCHHHHHHhcccccCCCceEEEEEeCCEeEEE-EEecCC-CC-cEEEEEcC
Confidence 443 357789999997622 12346789999999864 444321 24 88888876
No 68
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.65 E-value=0.0067 Score=55.76 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCCcchHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 11 NGVADSTQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 11 dg~tddt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
||. -+-.-||+||+++-.. ...-+|+|.+|+|.-. +.+... |. +++|.++|
T Consensus 239 dGs-G~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E~-V~I~~~-k~-~i~l~G~g 290 (537)
T PLN02506 239 DGS-GHYRTITEAINEAPNHSNRRYIIYVKKGVYKEN-IDMKKK-KT-NIMLVGDG 290 (537)
T ss_pred CCC-CCccCHHHHHHhchhcCCCcEEEEEeCCeeeEE-EeccCC-Cc-eEEEEEcC
Confidence 443 2477899999876332 2345899999999753 233211 23 78887765
No 69
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.63 E-value=0.012 Score=54.54 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=34.0
Q ss_pred CCCCcchHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 10 GNGVADSTQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
.||. -|-.-||+||+++-.. ..--+|+|.||+|.- .+.+... |. +++|.++|
T Consensus 265 ~dGs-G~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~E-~V~i~~~-k~-~i~l~G~g 317 (572)
T PLN02990 265 QDGS-GQYKTINEALNAVPKANQKPFVIYIKQGVYNE-KVDVTKK-MT-HVTFIGDG 317 (572)
T ss_pred CCCC-CCCcCHHHHHhhCcccCCceEEEEEeCceeEE-EEEecCC-CC-cEEEEecC
Confidence 3443 3467799999876221 123579999999985 4555421 23 88888876
No 70
>PLN02304 probable pectinesterase
Probab=97.58 E-value=0.0062 Score=53.34 Aligned_cols=52 Identities=25% Similarity=0.259 Sum_probs=34.1
Q ss_pred CCCCcchHHHHHHHHHHHhhc-CCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 10 GNGVADSTQAFAKAWAAACAS-TESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~-~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
.||. -|-.-||+||+++-+. ...-+|+|.||+|. ..|.+... |. +++|.++|
T Consensus 81 ~dGs-Gdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~-EkV~Ip~~-K~-~Itl~G~g 133 (379)
T PLN02304 81 PNGC-CNFTTVQSAVDAVGNFSQKRNVIWINSGIYY-EKVTVPKT-KP-NITFQGQG 133 (379)
T ss_pred CCCC-CCccCHHHHHhhCcccCCCcEEEEEeCeEeE-EEEEECCC-CC-cEEEEecC
Confidence 3453 3477899999976221 12457899999998 34555321 24 89998876
No 71
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=97.50 E-value=0.0024 Score=53.29 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHHHhhcCCCcEEEecCcee--EEE-eEEeeccCCCCCeEEEECCEEEe
Q 036371 14 ADSTQAFAKAWAAACASTESATINVPKGRY--LLG-YVAFNGDCKSSDITFRIDGTLVA 69 (245)
Q Consensus 14 tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y--~~~-~l~l~~~~~s~~~~l~~~g~l~~ 69 (245)
.|=-++|.+|+.. +.+|++|+|-- -+. .+.+. . +-+|++.|.|+.
T Consensus 43 ~dwiasfkqaf~e------~qtvvvpagl~cenint~ifip----~-gktl~v~g~l~g 90 (464)
T PRK10123 43 HDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFIP----P-GKTLHILGSLRG 90 (464)
T ss_pred ccHHHHHHHHhcc------CcEEEecCccEecccccceEeC----C-CCeEEEEEEeec
Confidence 3556778888853 57999999952 232 34444 2 667777766653
No 72
>PLN02497 probable pectinesterase
Probab=97.37 E-value=0.078 Score=45.86 Aligned_cols=207 Identities=13% Similarity=0.016 Sum_probs=95.8
Q ss_pred cCCCCcchHHHHHHHHHHHhhcC-CCcEEEecCceeEEEeEEeeccCCCCCeEEEECC----EEEeeccccccCCCcceE
Q 036371 9 KGNGVADSTQAFAKAWAAACAST-ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG----TLVAPADYCVLGQADNWL 83 (245)
Q Consensus 9 ~~dg~tddt~Aiq~Ai~~a~~~~-~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g----~l~~~~~~~~~~~~~~~i 83 (245)
..||. -|-.-||+||+++-... .-.+|+|-||+|+- .|.+... |. +++|.++| .|........+ .++-+
T Consensus 37 a~dGs-Gdf~TIq~AIdavP~~~~~~~~I~Ik~G~Y~E-kV~Ip~~-k~-~itl~G~g~~~tiIt~~~~~~t~--~SaT~ 110 (331)
T PLN02497 37 DQSGH-GNFTTIQSAIDSVPSNNKHWFCINVKAGLYRE-KVKIPYD-KP-FIVLVGAGKRRTRIEWDDHDSTA--QSPTF 110 (331)
T ss_pred CCCCC-CCccCHHHHHhhccccCCceEEEEEeCcEEEE-EEEecCC-CC-cEEEEecCCCCceEEEecccccc--CceEE
Confidence 34554 34788999998763221 22469999999965 3444211 24 88888875 23222111111 12223
Q ss_pred EEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEE--EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCC
Q 036371 84 SFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ--LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPG 161 (245)
Q Consensus 84 ~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~--~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~ 161 (245)
... ++++..++.+|...-. +..... .........++ .+...+.+|+|... +-.+. .....-.+++|.|...
T Consensus 111 ~v~-a~~f~a~nlT~~Nt~~--~~~~~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~-QDTLy-~~~gRqyf~~C~IeG~- 183 (331)
T PLN02497 111 STL-ADNTVVKSITFANSYN--FPSKGN-KNPRVPAVAAMIGGDKSAFYSCGFAGV-QDTLW-DSDGRHYFKRCTIQGA- 183 (331)
T ss_pred EEe-cCCeEEEccEEEeCCC--CccccC-CCCCcceEEEEecCCcEEEEeeEEecc-cccee-eCCCcEEEEeCEEEec-
Confidence 222 3444444433332110 000000 00001122232 55566666666532 11221 2233455566666552
Q ss_pred CCCCCCeeeccCeecEEEEecEEeeCC--------eeEEecC-----CCeeEEEEeeEEcCCceEEEeccCcCCCCCCeE
Q 036371 162 NSPNTDGIHVQLSTNAKIMNCTIKTGD--------DCIPIGP-----GTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQ 228 (245)
Q Consensus 162 ~~~~~dGi~~~~s~~v~I~n~~i~~~d--------D~i~i~~-----~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~ 228 (245)
.|-| .+.-...+++|.|..-. ..|+..+ ......+.||++.+..-..+| .+ .....
T Consensus 184 ----VDFI--FG~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g~~yLG---RP--W~~ys 252 (331)
T PLN02497 184 ----VDFI--FGSGQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGTGSAYLG---RP--WRGYS 252 (331)
T ss_pred ----ccEE--ccCceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccCCCEEEe---CC--CCCCc
Confidence 2211 23345667777765421 2333211 124677777777654333332 11 13456
Q ss_pred EEEEEeEEEEC
Q 036371 229 NVTVIRTVFTG 239 (245)
Q Consensus 229 ni~i~n~~~~~ 239 (245)
.++|.|+.|.+
T Consensus 253 rvvf~~t~m~~ 263 (331)
T PLN02497 253 RVLFYNSNLTD 263 (331)
T ss_pred eEEEEecccCC
Confidence 77777776654
No 73
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.31 E-value=0.0026 Score=51.19 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=8.8
Q ss_pred EEEeCcccEEEEeEEEEC
Q 036371 142 IVINGCKDVHIEGVTVIA 159 (245)
Q Consensus 142 i~~~~~~~i~i~n~~i~~ 159 (245)
+.+..+++|-|++|++..
T Consensus 78 i~i~~~~nVWIDH~sfs~ 95 (200)
T PF00544_consen 78 ISIDNSSNVWIDHCSFSW 95 (200)
T ss_dssp EEEESTEEEEEES-EEEE
T ss_pred EEEEecccEEEeccEEec
Confidence 444555555555555554
No 74
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.18 E-value=0.012 Score=47.51 Aligned_cols=101 Identities=27% Similarity=0.403 Sum_probs=67.3
Q ss_pred EEEEeeEEecCC------CeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeE
Q 036371 127 IRINGLLSLNSQ------MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNL 200 (245)
Q Consensus 127 v~i~~v~i~n~~------~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni 200 (245)
+.++++++.... ..++.+..++++.|+||++... +.+|+.+..+....+.++.... ++.+..+..++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeeccceeEE
Confidence 347777776432 2568888999999999999876 4678887755555554443321 23344345678
Q ss_pred EEEeeEEcCC-ceEEEeccCcCCCCCCeEEEEEEeEEEEC-Ccccc
Q 036371 201 WIERVTCGPA-HGISIGSLGKDMNDEGVQNVTVIRTVFTG-TQNGL 244 (245)
Q Consensus 201 ~i~n~~~~~~-~Gi~igs~g~~~~~~~~~ni~i~n~~~~~-~~~g~ 244 (245)
.+.++.+..+ .|+..++ ++++++||++.. ..+|+
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi 202 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGI 202 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeE
Confidence 8889888765 4643322 799999999998 66665
No 75
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=96.68 E-value=0.042 Score=46.73 Aligned_cols=48 Identities=21% Similarity=0.113 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHhhcCC--CcEEEecCceeEEEeEEeeccCCCCCeEEEECC
Q 036371 15 DSTQAFAKAWAAACASTE--SATINVPKGRYLLGYVAFNGDCKSSDITFRIDG 65 (245)
Q Consensus 15 ddt~Aiq~Ai~~a~~~~~--g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g 65 (245)
++-.-||+|+++|..... ...|.+-||.|.- .|.+... .+.++|++++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e-~v~Vp~~--~~~ITLyGed 141 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQE-TVYVPAA--PGGITLYGED 141 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceece-eEEecCC--CCceeEEecC
Confidence 677889999998743323 3456678999853 2333311 0147776653
No 76
>PLN02480 Probable pectinesterase
Probab=96.51 E-value=0.37 Score=41.98 Aligned_cols=108 Identities=13% Similarity=0.066 Sum_probs=71.4
Q ss_pred eEEEEecEEEEeeEEecCCC---------eEEEE-eCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCe
Q 036371 120 TLYQLQNIRINGLLSLNSQM---------FHIVI-NGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDD 189 (245)
Q Consensus 120 ~~~~~~nv~i~~v~i~n~~~---------~~i~~-~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD 189 (245)
..+..+++++++|+|+|+.. ..+.+ ..++++.++||.+....|. +.... ..-..++|+|.+.=|
T Consensus 127 vtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDT-----Ly~~~-gR~yf~~C~IeG~VD 200 (343)
T PLN02480 127 FTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNT-----LFDYK-GRHYYHSCYIQGSID 200 (343)
T ss_pred EEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccce-----eEeCC-CCEEEEeCEEEeeee
Confidence 34448999999999999832 33433 5689999999999996543 33222 457889999987644
Q ss_pred eEEecCCCeeEEEEeeEEcCC-------ce-EEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 190 CIPIGPGTKNLWIERVTCGPA-------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 190 ~i~i~~~~~ni~i~n~~~~~~-------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
+-.|.-...+++|++..- .| |.--+- . ...-....|.||++...
T Consensus 201 ---FIFG~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r--~--~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 201 ---FIFGRGRSIFHNCEIFVIADRRVKIYGSITAHNR--E--SEDNSGFVFIKGKVYGI 252 (343)
T ss_pred ---EEccceeEEEEccEEEEecCCCCCCceEEEcCCC--C--CCCCCEEEEECCEEccc
Confidence 323345789999998732 23 332221 1 12345679999999763
No 77
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.2 Score=43.07 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=31.9
Q ss_pred EecEEEEeeEEecC-------CCeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEe
Q 036371 124 LQNIRINGLLSLNS-------QMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIK 185 (245)
Q Consensus 124 ~~nv~i~~v~i~n~-------~~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~ 185 (245)
+.++++++.++..- ..-+|++..+.+..|...+|.- ..|||....|++-.++++.++
T Consensus 128 s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy-----~rDgIy~~~S~~~~~~gnr~~ 191 (408)
T COG3420 128 SADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISY-----GRDGIYSDTSQHNVFKGNRFR 191 (408)
T ss_pred cCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCcccc-----ccceEEEcccccceecccchh
Confidence 55666666666521 2335666666666666666654 355555555555555555443
No 78
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=95.81 E-value=0.012 Score=34.90 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEe
Q 036371 142 IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIK 185 (245)
Q Consensus 142 i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~ 185 (245)
|.+..+.+.+|++.++.. ..+||++..|++-+|+++.+.
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 444455555555555554 344555555555555555543
No 79
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=95.79 E-value=0.12 Score=42.89 Aligned_cols=95 Identities=24% Similarity=0.336 Sum_probs=68.2
Q ss_pred EEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEee-CCeeEEe-----cCCCeeEEEEeeEEcCC-ceEE
Q 036371 142 IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKT-GDDCIPI-----GPGTKNLWIERVTCGPA-HGIS 214 (245)
Q Consensus 142 i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~-~dD~i~i-----~~~~~ni~i~n~~~~~~-~Gi~ 214 (245)
+.+....+.+|++++|.++. ....-|+.+.++ +.+|+||+|.+ ..++|.+ +....++.|+++.+... .||+
T Consensus 91 ~tI~~~~~~~i~GvtItN~n-~~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~ 168 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPN-IARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGIS 168 (246)
T ss_pred EEEEecCCCEEEEEEEEcCC-CCcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeE
Confidence 44555688899999999972 124568999876 99999999986 4677755 33467888999988864 5888
Q ss_pred EeccCcCCCCCCeEEEEEEeEEEECCcccc
Q 036371 215 IGSLGKDMNDEGVQNVTVIRTVFTGTQNGL 244 (245)
Q Consensus 215 igs~g~~~~~~~~~ni~i~n~~~~~~~~g~ 244 (245)
+... ...+. -.++|+.+.++..||
T Consensus 169 i~~~-----~~~~~-n~I~NN~I~~N~~Gi 192 (246)
T PF07602_consen 169 ISDN-----AAPVE-NKIENNIIENNNIGI 192 (246)
T ss_pred EEcc-----cCCcc-ceeeccEEEeCCcCe
Confidence 8544 12233 356888888877775
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=95.57 E-value=0.024 Score=33.62 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=32.3
Q ss_pred eeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcC
Q 036371 168 GIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGP 209 (245)
Q Consensus 168 Gi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~ 209 (245)
||.++.|.+.+|+++.+...+++|.+.. +.+-+++++++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEEEc
Confidence 6788888888899999988888888877 4677777777653
No 81
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=95.23 E-value=0.58 Score=36.73 Aligned_cols=114 Identities=17% Similarity=0.105 Sum_probs=70.7
Q ss_pred ecEEEEeeEEecCCCeEEEEeCc---------ccEEEEeEEEECCCCCC---CCCeeeccCeecEEEEecEEeeC-CeeE
Q 036371 125 QNIRINGLLSLNSQMFHIVINGC---------KDVHIEGVTVIAPGNSP---NTDGIHVQLSTNAKIMNCTIKTG-DDCI 191 (245)
Q Consensus 125 ~nv~i~~v~i~n~~~~~i~~~~~---------~~i~i~n~~i~~~~~~~---~~dGi~~~~s~~v~I~n~~i~~~-dD~i 191 (245)
++|.|.+-.|.+...++|-+... ++|.|.+..|..++..+ ...||-..+-.+.+|+|++|... .-+|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai 81 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAI 81 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceE
Confidence 56777777777777777655433 58888888888766443 45688888878889999998754 3344
Q ss_pred Eec--------C-CCeeEEEEeeEEcCC---------ceEEEeccCcCCCCCCeEEEEEEeEEEECCccc
Q 036371 192 PIG--------P-GTKNLWIERVTCGPA---------HGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNG 243 (245)
Q Consensus 192 ~i~--------~-~~~ni~i~n~~~~~~---------~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~g 243 (245)
+-. . +..-.+|+|+.+.++ .|-.+--. -..--.+.++|+-+.++..|
T Consensus 82 ~~~y~~~~~sp~gsgyttivRNNII~NT~~r~~~~~GtGYgv~N~-----L~~tHsFvLenNclYnN~aG 146 (198)
T PF08480_consen 82 AQMYPDYDLSPKGSGYTTIVRNNIIVNTRKRKSSPAGTGYGVINY-----LPETHSFVLENNCLYNNAAG 146 (198)
T ss_pred EEEecccccCCCCCceEEEEEcceEeeeeecccCCCCceeEEEec-----CCCcceEEEEccceeccCcC
Confidence 432 0 123466777766432 23333211 12334557777777776654
No 82
>PLN02665 pectinesterase family protein
Probab=93.67 E-value=4.7 Score=35.55 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=68.8
Q ss_pred EEEecEEEEeeEEecCCC---------eE--EEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCee
Q 036371 122 YQLQNIRINGLLSLNSQM---------FH--IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDC 190 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~---------~~--i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~ 190 (245)
+.++++..++++|+|... .. +. ...+...+.||++.+..|. +.... ..-..++|+|.+.=|-
T Consensus 151 v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~-v~gDka~f~~C~f~G~QDT-----L~~~~-gr~yf~~CyIeG~VDF 223 (366)
T PLN02665 151 VESDYFMAANIIIKNSAPRPDGKRKGAQAVAMR-ISGDKAAFYNCRFIGFQDT-----LCDDK-GRHFFKDCYIEGTVDF 223 (366)
T ss_pred EECCCeEEEeeEEEeCCCCcCCCCCCcceEEEE-EcCCcEEEEcceeccccce-----eEeCC-CCEEEEeeEEeeccce
Confidence 348999999999999642 12 33 3469999999999986543 33222 3577899999876453
Q ss_pred EEecCCCeeEEEEeeEEcCC-c---e-EEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 191 IPIGPGTKNLWIERVTCGPA-H---G-ISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 191 i~i~~~~~ni~i~n~~~~~~-~---G-i~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
| .|.-...+++|++..- . | |.- .+. .....-....|.||++....
T Consensus 224 I---FG~g~a~fe~C~i~s~~~~~~g~ITA--~~r-~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 224 I---FGSGKSLYLNTELHVVGDGGLRVITA--QAR-NSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred e---ccccceeeEccEEEEecCCCcEEEEc--CCC-CCCCCCceEEEEeeEEecCC
Confidence 3 2344778999998731 1 2 222 111 11123456789999998754
No 83
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=93.60 E-value=0.86 Score=35.80 Aligned_cols=90 Identities=19% Similarity=0.162 Sum_probs=59.0
Q ss_pred ccEEEEeEEEECCCCCCCCCeeeccC---------eecEEEEecEEee-CC-eeE-----EecCCCeeEEEEeeEEcCCc
Q 036371 148 KDVHIEGVTVIAPGNSPNTDGIHVQL---------STNAKIMNCTIKT-GD-DCI-----PIGPGTKNLWIERVTCGPAH 211 (245)
Q Consensus 148 ~~i~i~n~~i~~~~~~~~~dGi~~~~---------s~~v~I~n~~i~~-~d-D~i-----~i~~~~~ni~i~n~~~~~~~ 211 (245)
++|+|.|..|... ..-||.+.+ .++|.|..+.|.. |- -.+ .+.+|..|.+|+|+.|-+..
T Consensus 2 ~dIEIYnN~I~~T----~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 2 DDIEIYNNTIYNT----YGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVY 77 (198)
T ss_pred CceEEecceeecc----cCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccc
Confidence 5788899999876 455676642 3599999999863 21 111 24556899999999999875
Q ss_pred eEEEeccCcC---CCCCCeEEEEEEeEEEECCc
Q 036371 212 GISIGSLGKD---MNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 212 Gi~igs~g~~---~~~~~~~ni~i~n~~~~~~~ 241 (245)
+.+|...-.. ...+.-.-.+++|+.+.++.
T Consensus 78 ~aai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 78 HAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred cceEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 4333332111 11234455889999988875
No 84
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=93.38 E-value=0.48 Score=42.28 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=57.0
Q ss_pred EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeC-----CeeEEecCC--
Q 036371 124 LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTG-----DDCIPIGPG-- 196 (245)
Q Consensus 124 ~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~-----dD~i~i~~~-- 196 (245)
+..-++++-+|+++.+ .+.+.+..+.+|++..+...+...++-||.+.. ++-+|.|++|..- +.++++..+
T Consensus 222 S~~N~ir~Ntf~es~G-~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~-~~H~I~nNY~~gl~g~~~~~~~~v~ng~p 299 (425)
T PF14592_consen 222 SSDNTIRNNTFRESQG-SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIG-EGHTIYNNYFEGLTGTRFRGALAVMNGVP 299 (425)
T ss_dssp SBT-EEES-EEES-SS-EEEEEE-SS-EEES-EEEE-SSSS-B--EEE-S-BS-EEES-EEEESSB-TTTTSEE-EEE--
T ss_pred cCCceEeccEEEeccc-eEEEecCCCceEeccEEecCCCcCCCCceEEec-CCcEEEcceeeccccceeecceeeccCCC
Confidence 3344555555655533 466666677777777777654444677899987 6677888888642 234442111
Q ss_pred ---------CeeEEEEeeEEcCCc-eEEEeccCcC----------CCCCCeEEEEEEeEEEECCc
Q 036371 197 ---------TKNLWIERVTCGPAH-GISIGSLGKD----------MNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 197 ---------~~ni~i~n~~~~~~~-Gi~igs~g~~----------~~~~~~~ni~i~n~~~~~~~ 241 (245)
.+|++|.++++-++. +|.+|.-... .......+++|+|+.+.+.+
T Consensus 300 ~s~ln~y~qv~nv~I~~NT~In~~~~i~~g~g~~~~~~~~~~~~~i~s~~p~~~~~~nN~i~~~~ 364 (425)
T PF14592_consen 300 NSPLNRYDQVKNVLIANNTFINCKSPIHFGAGSDEERKDVLPASNIRSARPINSTFANNIIYNDD 364 (425)
T ss_dssp BSTTSTT---BSEEEES-EEES-SEEEESST-THHHHHHHHHHCT---B---SEEEES-EEE--S
T ss_pred CCCcccccccceeEEecceEEccCCceEEccccccccccccccccccccCCceEEeeCCeEEcCC
Confidence 688999999988775 6777651100 01234678888888887665
No 85
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=92.74 E-value=4.6 Score=32.79 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=50.6
Q ss_pred ceEEEEecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccCee-cEEEEecEEeeCCeeEEecCCC
Q 036371 119 ATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLST-NAKIMNCTIKTGDDCIPIGPGT 197 (245)
Q Consensus 119 ~~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~-~v~I~n~~i~~~dD~i~i~~~~ 197 (245)
|.|+--.+.+|+++.|-....-+||-.. +.+|+|+....- -.|++.+.... .++|.+.-..+.+|=|-=..+.
T Consensus 55 ~vF~le~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~ 128 (215)
T PF03211_consen 55 PVFILEDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGG 128 (215)
T ss_dssp -SEEEETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SS
T ss_pred eEEEecCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCc
Confidence 5555467788888888777677888888 888888888875 35667776555 6677777666655544333333
Q ss_pred eeEEEEe
Q 036371 198 KNLWIER 204 (245)
Q Consensus 198 ~ni~i~n 204 (245)
-.+.|+|
T Consensus 129 Gtv~I~n 135 (215)
T PF03211_consen 129 GTVTIKN 135 (215)
T ss_dssp EEEEEEE
T ss_pred eeEEEEe
Confidence 3444444
No 86
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=92.72 E-value=4.4 Score=34.34 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=7.7
Q ss_pred CcEEEecCcee
Q 036371 33 SATINVPKGRY 43 (245)
Q Consensus 33 g~~v~ip~G~Y 43 (245)
..-+++|+|+-
T Consensus 71 nt~ifip~gkt 81 (464)
T PRK10123 71 NTGIFIPPGKT 81 (464)
T ss_pred ccceEeCCCCe
Confidence 35678888863
No 87
>PLN02497 probable pectinesterase
Probab=91.77 E-value=8.2 Score=33.57 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=68.7
Q ss_pred EEEecEEEEeeEEecCCCe-----------EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCe
Q 036371 122 YQLQNIRINGLLSLNSQMF-----------HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDD 189 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~-----------~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD 189 (245)
+.++++..++++|.|...+ .+ .....+...+.+|.+.+..|... .. ...-..++|+|.+.=|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy-----~~-~gRqyf~~C~IeG~VD 185 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLW-----DS-DGRHYFKRCTIQGAVD 185 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecccccee-----eC-CCcEEEEeCEEEeccc
Confidence 3388999999999987431 22 22346899999999999754432 22 2457889999987644
Q ss_pred eEEecCCCeeEEEEeeEEcCC--------ce-EEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 190 CIPIGPGTKNLWIERVTCGPA--------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 190 ~i~i~~~~~ni~i~n~~~~~~--------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
-| .|.-...+++|++... .| |.--+- .....-....|.||++...
T Consensus 186 FI---FG~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r---~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 186 FI---FGSGQSIYESCVIQVLGGQLEPGLAGFITAQGR---TNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred EE---ccCceEEEEccEEEEecCcCCCCCceEEEecCC---CCCCCCceEEEEccEEccC
Confidence 22 2344789999988631 12 322111 1123345679999999764
No 88
>PLN02773 pectinesterase
Probab=91.00 E-value=4.2 Score=35.13 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=70.8
Q ss_pred EEEecEEEEeeEEecCCCe----E-EEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCC
Q 036371 122 YQLQNIRINGLLSLNSQMF----H-IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG 196 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~----~-i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~ 196 (245)
+.++++.+++++|+|.... . -....++.+.+.+|++.+..|. +.... ....+++|+|...=|-| + |
T Consensus 99 v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDT-----L~~~~-gr~yf~~c~IeG~VDFI-F--G 169 (317)
T PLN02773 99 VEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDT-----LYLHY-GKQYLRDCYIEGSVDFI-F--G 169 (317)
T ss_pred EECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccce-----eEeCC-CCEEEEeeEEeecccEE-e--e
Confidence 3489999999999998432 1 2233469999999999986543 33332 35788999998765533 2 3
Q ss_pred CeeEEEEeeEEcCC-ce-EEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 197 TKNLWIERVTCGPA-HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 197 ~~ni~i~n~~~~~~-~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
.-...+++|++... .| |.--+- .....-....|.||++....
T Consensus 170 ~g~a~Fe~c~i~s~~~g~ITA~~r---~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 170 NSTALLEHCHIHCKSAGFITAQSR---KSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ccEEEEEeeEEEEccCcEEECCCC---CCCCCCceEEEEccEEecCC
Confidence 45689999999743 34 322111 11123346799999998753
No 89
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=88.53 E-value=10 Score=34.94 Aligned_cols=79 Identities=9% Similarity=-0.074 Sum_probs=47.8
Q ss_pred EEEEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecC
Q 036371 121 LYQLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGP 195 (245)
Q Consensus 121 ~~~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~ 195 (245)
.+..+++..++++|+|.... .+ .-..++...+.+|.+.+..|... ... ..-..++|+|.+.=|-| .
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy-----~~~-~rqyy~~C~I~G~vDFI---F 336 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLY-----AAA-LRQFYRECDIYGTIDFI---F 336 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchhe-----eCC-CcEEEEeeEEEeccceE---e
Confidence 34488999999999987542 22 22346999999999998654332 222 23456666666543322 1
Q ss_pred CCeeEEEEeeEEc
Q 036371 196 GTKNLWIERVTCG 208 (245)
Q Consensus 196 ~~~ni~i~n~~~~ 208 (245)
|.-...++||++.
T Consensus 337 G~a~avf~~C~i~ 349 (497)
T PLN02698 337 GNAAAVFQNCYLF 349 (497)
T ss_pred cccceeecccEEE
Confidence 2234566666664
No 90
>PLN02176 putative pectinesterase
Probab=87.84 E-value=18 Score=31.63 Aligned_cols=106 Identities=17% Similarity=0.088 Sum_probs=68.6
Q ss_pred EEecEEEEeeEEecCCC----------eEE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeE
Q 036371 123 QLQNIRINGLLSLNSQM----------FHI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCI 191 (245)
Q Consensus 123 ~~~nv~i~~v~i~n~~~----------~~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i 191 (245)
.++++..++++|+|... ..+ .....+...+.+|.+.+..|. +... ...-..++|+|.+.=|-|
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDT-----Ly~~-~gRqyf~~CyIeG~VDFI 193 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDT-----LFDG-KGRHYYKRCVISGGIDFI 193 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccce-----eEeC-CcCEEEEecEEEecccEE
Confidence 38899999999998742 122 233469999999999986543 3333 246788999999765533
Q ss_pred EecCCCeeEEEEeeEEcCC---------ce-EEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 192 PIGPGTKNLWIERVTCGPA---------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 192 ~i~~~~~ni~i~n~~~~~~---------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
+ |.-...+++|++..- .| |.--+- .....-....|.||++...
T Consensus 194 -F--G~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r---~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 194 -F--GYAQSIFEGCTLKLTLGIYPPNEPYGTITAQGR---PSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred -e--cCceEEEeccEEEEecccCCCCCCcEEEEeCCC---CCCCCCcEEEEECCEEccC
Confidence 2 344789999998621 22 332111 1112345789999999764
No 91
>PLN02432 putative pectinesterase
Probab=86.65 E-value=19 Score=30.75 Aligned_cols=78 Identities=13% Similarity=0.035 Sum_probs=45.3
Q ss_pred EEEecEEEEeeEEecCCCe---E-EEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCC
Q 036371 122 YQLQNIRINGLLSLNSQMF---H-IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGT 197 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~---~-i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~ 197 (245)
+..+++.+++++|+|.... . -.....+...+.+|.+....|.. .... ..-..++|.|.+.=|-| + |.
T Consensus 91 v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTL-----y~~~-gr~yf~~c~I~G~VDFI-F--G~ 161 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTL-----LDDT-GRHYYRNCYIEGATDFI-C--GN 161 (293)
T ss_pred EECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEeccccee-----EECC-CCEEEEeCEEEecccEE-e--cC
Confidence 3388999999999987431 1 22234699999999999865432 2221 23455566655443322 1 12
Q ss_pred eeEEEEeeEEc
Q 036371 198 KNLWIERVTCG 208 (245)
Q Consensus 198 ~ni~i~n~~~~ 208 (245)
-...+++|++.
T Consensus 162 g~a~Fe~c~i~ 172 (293)
T PLN02432 162 AASLFEKCHLH 172 (293)
T ss_pred ceEEEEeeEEE
Confidence 23555555553
No 92
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=85.77 E-value=4.8 Score=32.68 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=42.0
Q ss_pred ccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEe-eCCeeEEecCCCeeEEEEeeEE
Q 036371 148 KDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIK-TGDDCIPIGPGTKNLWIERVTC 207 (245)
Q Consensus 148 ~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~-~~dD~i~i~~~~~ni~i~n~~~ 207 (245)
+..+++|+.|-.+ ..||||-.. +.+|+|.+.. .+.|+++++...-.++|.+.-.
T Consensus 61 ~GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga 115 (215)
T PF03211_consen 61 DGATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGA 115 (215)
T ss_dssp TTEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEE
T ss_pred CCCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcc
Confidence 7899999999654 689999987 7889999886 5789999998665777777644
No 93
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=84.43 E-value=10 Score=35.51 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=71.3
Q ss_pred EEEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCC
Q 036371 122 YQLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG 196 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~ 196 (245)
+..+++..++++|+|.... .+ .-..++...+.||.|.+..|.... .. .....++|+|.+.=|-| .|
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~-----~~-~rq~y~~C~I~GtVDFI---FG 397 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYA-----HS-LRQFYKSCRIQGNVDFI---FG 397 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecccccee-----CC-CceEEEeeEEeecCCEE---ec
Confidence 3388999999999997532 22 234579999999999997554333 33 34578999999764422 33
Q ss_pred CeeEEEEeeEEcC---------C-c-eEEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 197 TKNLWIERVTCGP---------A-H-GISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 197 ~~ni~i~n~~~~~---------~-~-Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
.-...++||++.. + . .|.. .+ ......-..+.|.||++....
T Consensus 398 ~a~avfq~c~i~~~~~~~~~~~~~~~~iTA--~~-r~~~~~~~G~vf~~C~it~~~ 450 (553)
T PLN02708 398 NSAAVFQDCAILIAPRQLKPEKGENNAVTA--HG-RTDPAQSTGFVFQNCLINGTE 450 (553)
T ss_pred CceEEEEccEEEEeccccCCCCCCceEEEe--CC-CCCCCCCceEEEEccEEecCC
Confidence 4578999998862 1 1 2332 11 112234568899999998753
No 94
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=84.01 E-value=30 Score=30.70 Aligned_cols=171 Identities=13% Similarity=0.115 Sum_probs=100.5
Q ss_pred eecccccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCceeEEEeEEeeccCCCCCeEEEECC---E-EEeeccccccCC
Q 036371 3 VLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRIDG---T-LVAPADYCVLGQ 78 (245)
Q Consensus 3 v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g---~-l~~~~~~~~~~~ 78 (245)
|+.|=..++. |=.+||++=-+-|. .++.+=.+-+..-..+...+.|. +.++++++ . +... ....+|
T Consensus 46 vkt~~~~P~e--Dle~~I~~haKVaL--~Pg~~Y~i~~~V~I~~~cYIiGn----GA~V~v~~~~~~~f~v~-~~~~~P- 115 (386)
T PF01696_consen 46 VKTYWMEPGE--DLEEAIRQHAKVAL--RPGAVYVIRKPVNIRSCCYIIGN----GATVRVNGPDRVAFRVC-MQSMGP- 115 (386)
T ss_pred EEEEEcCCCc--CHHHHHHhcCEEEe--CCCCEEEEeeeEEecceEEEECC----CEEEEEeCCCCceEEEE-cCCCCC-
Confidence 3444555544 77778877555332 24444334444444444555553 56666642 1 2211 112222
Q ss_pred CcceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEE-EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEE
Q 036371 79 ADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ-LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTV 157 (245)
Q Consensus 79 ~~~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~-~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i 157 (245)
. +.+..+|++.+-.+++.+. .....+. ..++.+.++.|.+..+..+... ....+++|++
T Consensus 116 ---~--V~gM~~VtF~ni~F~~~~~-------------~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~--~~~~VrGC~F 175 (386)
T PF01696_consen 116 ---G--VVGMEGVTFVNIRFEGRDT-------------FSGVVFHANTNTLFHGCSFFGFHGTCLESW--AGGEVRGCTF 175 (386)
T ss_pred ---e--EeeeeeeEEEEEEEecCCc-------------cceeEEEecceEEEEeeEEecCcceeEEEc--CCcEEeeeEE
Confidence 2 2335666666655555431 1244444 8899999999999888777666 6899999999
Q ss_pred ECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCCc
Q 036371 158 IAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAH 211 (245)
Q Consensus 158 ~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~ 211 (245)
.+. .-|+.-.+-..+.|+.|.+.-- -+.|.+ .....|++|.+..+.
T Consensus 176 ~~C-----~~gi~~~~~~~lsVk~C~FekC--~igi~s-~G~~~i~hn~~~ec~ 221 (386)
T PF01696_consen 176 YGC-----WKGIVSRGKSKLSVKKCVFEKC--VIGIVS-EGPARIRHNCASECG 221 (386)
T ss_pred EEE-----EEEeecCCcceEEeeheeeehe--EEEEEe-cCCeEEecceecccc
Confidence 885 3466656556788888888742 244443 336777777776654
No 95
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=83.08 E-value=6.4 Score=33.71 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=64.0
Q ss_pred EEEEecEEEEeeEEecCCCe------EEEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEec
Q 036371 121 LYQLQNIRINGLLSLNSQMF------HIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIG 194 (245)
Q Consensus 121 ~~~~~nv~i~~v~i~n~~~~------~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~ 194 (245)
.+..+++.+++|+|.|.... .+. ..+++..+.+|.+.+.. |-+.... ....+++|+|...=|-| ++
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g~Q-----DTL~~~~-~r~y~~~c~IeG~vDFI-fG 154 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLGYQ-----DTLYANG-GRQYFKNCYIEGNVDFI-FG 154 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE-ST-----T-EEE-S-SEEEEES-EEEESEEEE-EE
T ss_pred cccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEcccc-----ceeeecc-ceeEEEeeEEEecCcEE-EC
Confidence 34488999999999986432 244 45689999999999864 4444443 45788999999876643 33
Q ss_pred CCCeeEEEEeeEEcCC-----ceEEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 195 PGTKNLWIERVTCGPA-----HGISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 195 ~~~~ni~i~n~~~~~~-----~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
. -...+++|++... .+-.|--.+. .+...-....|.||++....
T Consensus 155 ~--~~a~f~~c~i~~~~~~~~~~~~ItA~~r-~~~~~~~G~vF~~c~i~~~~ 203 (298)
T PF01095_consen 155 N--GTAVFENCTIHSRRPGGGQGGYITAQGR-TSPSQKSGFVFDNCTITGDS 203 (298)
T ss_dssp S--SEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEES-EEEEST
T ss_pred C--eeEEeeeeEEEEeccccccceeEEeCCc-cccCCCeEEEEEEeEEecCc
Confidence 2 3678999998621 1122211111 12234668899999998653
No 96
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=83.06 E-value=11 Score=35.05 Aligned_cols=109 Identities=7% Similarity=0.011 Sum_probs=69.6
Q ss_pred EEEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCC
Q 036371 122 YQLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG 196 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~ 196 (245)
+..+++..++++|+|.... .+ ....++...+.+|.+.+..|.... .. ..-..++|+|.+.=| +-.|
T Consensus 316 v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~-----~~-~rqyy~~C~I~GtVD---FIFG 386 (537)
T PLN02506 316 VSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYA-----HS-LRQFYRECEIYGTID---FIFG 386 (537)
T ss_pred EEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccccccee-----cC-CceEEEeeEEecccc---eEcc
Confidence 3388999999999988432 22 233479999999999987554333 32 346889999987644 2233
Q ss_pred CeeEEEEeeEEcCC-----ceEEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 197 TKNLWIERVTCGPA-----HGISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 197 ~~ni~i~n~~~~~~-----~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
.-...++||++..- ..-.|--.|.. ....-..+.|.||++...
T Consensus 387 ~a~avfq~C~i~~r~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 387 NGAAVLQNCKIYTRVPLPLQKVTITAQGRK-SPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred CceeEEeccEEEEccCCCCCCceEEccCCC-CCCCCcEEEEEcCEEccC
Confidence 45789999998631 11122112211 122346789999998753
No 97
>PLN02682 pectinesterase family protein
Probab=82.27 E-value=24 Score=31.25 Aligned_cols=107 Identities=10% Similarity=0.067 Sum_probs=69.2
Q ss_pred EEEecEEEEeeEEecCCCe---------EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeE
Q 036371 122 YQLQNIRINGLLSLNSQMF---------HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCI 191 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~---------~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i 191 (245)
+..+++..+|++|+|.... .+ .....+...+.+|++....|.. ... ...-..++|+|.+.=|-|
T Consensus 160 v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTL-----y~~-~gRqyf~~C~IeG~VDFI 233 (369)
T PLN02682 160 VNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTL-----YDH-LGRHYFKDCYIEGSVDFI 233 (369)
T ss_pred EECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccce-----EEC-CCCEEEEeeEEcccccEE
Confidence 3488999999999997421 22 2234799999999999965433 222 245788999998764422
Q ss_pred EecCCCeeEEEEeeEEcC---Cce-EEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 192 PIGPGTKNLWIERVTCGP---AHG-ISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 192 ~i~~~~~ni~i~n~~~~~---~~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
.|.-...+++|++.. ..| |.--+- .....-....|.||++...
T Consensus 234 ---FG~g~a~Fe~C~I~s~~~~~G~ITA~~r---~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 234 ---FGNGLSLYEGCHLHAIARNFGALTAQKR---QSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred ---ecCceEEEEccEEEEecCCCeEEecCCC---CCCCCCceEEEEeeEecCC
Confidence 234578999999973 123 322111 1112345789999999764
No 98
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=82.19 E-value=18 Score=33.94 Aligned_cols=108 Identities=11% Similarity=0.064 Sum_probs=70.8
Q ss_pred EEEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCC
Q 036371 122 YQLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG 196 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~ 196 (245)
+..+++..++++|+|.... .+ .-..++...+.+|.|.+..| -+.... ..-..++|+|.+.=| +-.|
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD-----TLy~~~-~Rqyy~~C~I~GtVD---FIFG 407 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQD-----TLYTHS-LRQFYRECDIYGTVD---FIFG 407 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCc-----ceEECC-CCEEEEeeEEecccc---eecc
Confidence 3489999999999997432 22 23456899999999999654 333333 356899999987644 3334
Q ss_pred CeeEEEEeeEEcCC------ce-EEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 197 TKNLWIERVTCGPA------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 197 ~~ni~i~n~~~~~~------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
.-...++||++..- .| |.-- |. .....-..+.|.||++....
T Consensus 408 ~a~avfq~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~G~vf~~c~i~~~~ 456 (566)
T PLN02713 408 NAAVVFQNCNLYPRLPMQGQFNTITAQ--GR-TDPNQNTGTSIQNCTIKAAD 456 (566)
T ss_pred cceEEEeccEEEEecCCCCCcceeeec--CC-CCCCCCCEEEEEcCEEecCC
Confidence 56789999998631 12 3321 11 11234567899999998643
No 99
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=82.08 E-value=12 Score=34.93 Aligned_cols=106 Identities=7% Similarity=0.018 Sum_probs=70.4
Q ss_pred EecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCe
Q 036371 124 LQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTK 198 (245)
Q Consensus 124 ~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ 198 (245)
.+++..++++|+|.... .+ .-..++...+.+|.|.+..|.... .. .....++|+|.+.=| +-.|.-
T Consensus 322 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~-----~~-~Rqyy~~C~I~GtVD---FIFG~a 392 (548)
T PLN02301 322 GDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYA-----HS-LRQFYRDSYITGTVD---FIFGNA 392 (548)
T ss_pred CCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecccccee-----cC-CcEEEEeeEEEeccc---eecccc
Confidence 88999999999987532 22 233469999999999997554333 33 345889999997644 333445
Q ss_pred eEEEEeeEEcCC------ce-EEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 199 NLWIERVTCGPA------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 199 ni~i~n~~~~~~------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
...++||++..- .+ |.. .|. .....-..+.|.||++....
T Consensus 393 ~avfq~c~i~~~~~~~~~~~~iTA--qgr-~~~~~~tG~vf~~c~i~~~~ 439 (548)
T PLN02301 393 AVVFQNCKIVARKPMAGQKNMVTA--QGR-TDPNQNTGISIQKCDIIASS 439 (548)
T ss_pred eeEEeccEEEEecCCCCCCceEEe--cCC-CCCCCCCEEEEEeeEEecCc
Confidence 789999988631 12 332 111 12234568899999998753
No 100
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=80.93 E-value=22 Score=32.04 Aligned_cols=112 Identities=12% Similarity=0.106 Sum_probs=71.4
Q ss_pred EEecEEEEeeEEecCCCe--------EE-EEeCcccEEEEeEEEECCCCCCCCC------eeeccCeecEEEEecEEeeC
Q 036371 123 QLQNIRINGLLSLNSQMF--------HI-VINGCKDVHIEGVTVIAPGNSPNTD------GIHVQLSTNAKIMNCTIKTG 187 (245)
Q Consensus 123 ~~~nv~i~~v~i~n~~~~--------~i-~~~~~~~i~i~n~~i~~~~~~~~~d------Gi~~~~s~~v~I~n~~i~~~ 187 (245)
..+++..++++|+|.... .+ .....+.+.+.+|.|....|....+ +...........++|+|.+.
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~ 283 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGD 283 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeec
Confidence 389999999999998532 22 2345699999999999976543321 11111223678999999976
Q ss_pred CeeEEecCCCeeEEEEeeEEcCC------ce-EEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 188 DDCIPIGPGTKNLWIERVTCGPA------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 188 dD~i~i~~~~~ni~i~n~~~~~~------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
=|-| .|.-...++||++..- .| |.-.+- ....-....|.||++....
T Consensus 284 VDFI---FG~g~AvFenC~I~s~~~~~~~~g~ITA~~t----~~~~~~GfvF~nCrit~~g 337 (422)
T PRK10531 284 VDFV---FGRGAVVFDNTEFRVVNSRTQQEAYVFAPAT----LPNIYYGFLAINSRFNASG 337 (422)
T ss_pred ccEE---ccCceEEEEcCEEEEecCCCCCceEEEecCC----CCCCCCEEEEECCEEecCC
Confidence 4433 2345788999998641 13 222211 1233557899999998743
No 101
>PLN02671 pectinesterase
Probab=80.65 E-value=19 Score=31.74 Aligned_cols=106 Identities=14% Similarity=0.170 Sum_probs=68.2
Q ss_pred EEEecEEEEeeEEecCCC--------e--EEEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeE
Q 036371 122 YQLQNIRINGLLSLNSQM--------F--HIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCI 191 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~--------~--~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i 191 (245)
+..+++..++++|+|... . .+.+ ..+.+.+.+|.+....|... ... ..-..++|+|...=|-|
T Consensus 151 v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv-~gDra~f~~c~f~G~QDTLy-----~~~-gR~yf~~CyIeG~VDFI 223 (359)
T PLN02671 151 IESDYFCATGITFENTVVAEPGGQGMQAVALRI-SGDKAFFYKVRVLGAQDTLL-----DET-GSHYFYQCYIQGSVDFI 223 (359)
T ss_pred EECCceEEEeeEEEcCCCCCCCCCCccEEEEEE-cCccEEEEcceEeccccccE-----eCC-CcEEEEecEEEEeccEE
Confidence 338889999999998721 1 2333 46999999999998654432 222 35688999998764533
Q ss_pred EecCCCeeEEEEeeEEcCC---ce-EEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 192 PIGPGTKNLWIERVTCGPA---HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 192 ~i~~~~~ni~i~n~~~~~~---~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
+ |.-...+++|++... .| |.--+-. ....-....|.||++...
T Consensus 224 -F--G~g~A~Fe~C~I~s~~~~~G~ITA~~r~---~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 224 -F--GNAKSLYQDCVIQSTAKRSGAIAAHHRD---SPTEDTGFSFVNCVINGT 270 (359)
T ss_pred -e--cceeEEEeccEEEEecCCCeEEEeeccC---CCCCCccEEEEccEEccC
Confidence 2 344789999998632 23 3332210 112345679999999753
No 102
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=80.58 E-value=16 Score=33.85 Aligned_cols=106 Identities=8% Similarity=0.005 Sum_probs=69.3
Q ss_pred EEecEEEEeeEEecCCCe----EEE-EeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCC
Q 036371 123 QLQNIRINGLLSLNSQMF----HIV-INGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGT 197 (245)
Q Consensus 123 ~~~nv~i~~v~i~n~~~~----~i~-~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~ 197 (245)
..+++..++++|+|.... .+. -..++...+.+|.+.+..|.... .. ..-..++|+|.+.=| +-.|.
T Consensus 303 ~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~-----~~-~Rqyy~~C~IeGtVD---FIFG~ 373 (530)
T PLN02933 303 KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYV-----HS-AKQFYRECDIYGTID---FIFGN 373 (530)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEeccccccc-----CC-CceEEEeeEEecccc---eeccC
Confidence 388999999999987532 222 23479999999999997554332 22 346889999987634 33334
Q ss_pred eeEEEEeeEEcCC------ce-EEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 198 KNLWIERVTCGPA------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 198 ~ni~i~n~~~~~~------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
-...++||++..- .| |.--+- .....-..+.|.||++...
T Consensus 374 a~avFq~C~i~~~~~~~~~~~~iTAq~r---~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 374 AAVVFQNCSLYARKPNPNHKIAFTAQSR---NQSDQPTGISIISSRILAA 420 (530)
T ss_pred ceEEEeccEEEEeccCCCCceEEEecCC---CCCCCCceEEEEeeEEecC
Confidence 5688999988521 12 222111 1123355789999999864
No 103
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=80.52 E-value=14 Score=34.48 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=47.8
Q ss_pred EeCcccEEEEeEEEECCCCC--CCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCC
Q 036371 144 INGCKDVHIEGVTVIAPGNS--PNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPA 210 (245)
Q Consensus 144 ~~~~~~i~i~n~~i~~~~~~--~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~ 210 (245)
....+++..+|++|.+.... ..+.++.+. +..+.+.+|.|.+..|.+..++ ..-.+++|++.+.
T Consensus 313 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~-~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~Gt 378 (541)
T PLN02416 313 AVSGEGFLARDITIENTAGPEKHQAVALRVN-ADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGT 378 (541)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEc-CccEEEEcceEecccchhccCC--CceEEEeeEEeec
Confidence 33468999999999987543 244455555 4889999999999989877665 3568899988764
No 104
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=80.31 E-value=22 Score=33.16 Aligned_cols=94 Identities=5% Similarity=0.069 Sum_probs=57.9
Q ss_pred EEeCcccEEEEeEEEECCCCCC--CCCeeeccCeecEEEEecEEeeCCeeEEecCC------------------CeeEEE
Q 036371 143 VINGCKDVHIEGVTVIAPGNSP--NTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG------------------TKNLWI 202 (245)
Q Consensus 143 ~~~~~~~i~i~n~~i~~~~~~~--~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~------------------~~ni~i 202 (245)
.....+++..+|++|.+..... .+.++.+. +....+.+|.|....|.+..+++ .-...+
T Consensus 308 ~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~-~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avf 386 (538)
T PLN03043 308 FAVSGERFVAVDVTFRNTAGPEKHQAVALRNN-ADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIF 386 (538)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEc-CCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeee
Confidence 3445589999999999865332 33444444 47899999999998887766553 234455
Q ss_pred EeeEEcCC------ce-EEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 203 ERVTCGPA------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 203 ~n~~~~~~------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
+||++..- .+ |..-+ ......-..+.|.||++...
T Consensus 387 q~c~i~~r~~~~~~~~~iTA~~---r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 387 QNCNLYARKPMANQKNAFTAQG---RTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred eccEEEEecCCCCCCceEEecC---CCCCCCCceEEEEecEEecC
Confidence 55555320 11 22211 11112345789999999864
No 105
>PLN02197 pectinesterase
Probab=79.83 E-value=20 Score=33.85 Aligned_cols=111 Identities=8% Similarity=-0.060 Sum_probs=70.6
Q ss_pred EEEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCC
Q 036371 122 YQLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG 196 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~ 196 (245)
+..+++..++++|+|.... .+ ....++...+.+|.|.+..|. +.... ..-..++|+|.+.=| +-.|
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDT-----Ly~~~-~Rqyy~~C~I~GtVD---FIFG 431 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDT-----LYVNN-GRQFYRNIVVSGTVD---FIFG 431 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcc-----eEecC-CCEEEEeeEEEeccc---cccc
Confidence 3388999999999997432 22 234479999999999996543 33333 456889999997644 3233
Q ss_pred CeeEEEEeeEEcCC---ce--EEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 197 TKNLWIERVTCGPA---HG--ISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 197 ~~ni~i~n~~~~~~---~G--i~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
.....++||++... .| -.|--.|.......-..+.|.||++....
T Consensus 432 ~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 432 KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCC
Confidence 44589999988631 12 12212221100123457899999998753
No 106
>PLN02314 pectinesterase
Probab=79.54 E-value=16 Score=34.48 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=70.2
Q ss_pred EecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCe
Q 036371 124 LQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTK 198 (245)
Q Consensus 124 ~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ 198 (245)
.+++..++++|+|.... .+ .-..++...+.+|.+.+..|.... .. ..-..++|+|.+.=| +-.|.-
T Consensus 364 ~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~-----~~-~rq~y~~C~I~GtvD---FIFG~a 434 (586)
T PLN02314 364 GKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA-----HS-NRQFYRDCDITGTID---FIFGNA 434 (586)
T ss_pred cCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchhee-----CC-CCEEEEeeEEEeccc---eeccCc
Confidence 88999999999987432 22 234568899999999996544333 33 346889999987644 333445
Q ss_pred eEEEEeeEEcCC-----ceEEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 199 NLWIERVTCGPA-----HGISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 199 ni~i~n~~~~~~-----~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
...++||.+..- ..-.|--.|.. +...-..+.|.||++....
T Consensus 435 ~avf~~c~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 435 AVVFQNCNIQPRQPLPNQFNTITAQGKK-DPNQNTGISIQRCTISAFG 481 (586)
T ss_pred eeeeeccEEEEecCCCCCCceEecCCCC-CCCCCCEEEEEeeEEecCC
Confidence 789999998631 11122112111 1234567899999998754
No 107
>PLN02916 pectinesterase family protein
Probab=79.48 E-value=21 Score=32.90 Aligned_cols=107 Identities=7% Similarity=-0.030 Sum_probs=70.1
Q ss_pred EEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCC
Q 036371 123 QLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGT 197 (245)
Q Consensus 123 ~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~ 197 (245)
..+++..++++|+|.... .+ .-..++...+.+|.+.+..|. +.... ..-..++|+|.+.=| +-.|.
T Consensus 275 ~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDT-----Ly~~~-~Rqyy~~C~I~GtVD---FIFG~ 345 (502)
T PLN02916 275 SGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDT-----LFVHS-LRQFYRDCHIYGTID---FIFGD 345 (502)
T ss_pred ECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCce-----eEeCC-CCEEEEecEEecccc---eeccC
Confidence 388999999999987432 22 223569999999999996543 33333 346789999997644 33345
Q ss_pred eeEEEEeeEEcCC------ce-EEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 198 KNLWIERVTCGPA------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 198 ~ni~i~n~~~~~~------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
-...++||++..- .| |.--+- .....-..+.|.||++....
T Consensus 346 a~avFq~C~I~~~~~~~~~~g~ITAq~r---~~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 346 AAVVFQNCDIFVRRPMDHQGNMITAQGR---DDPHENTGISIQHSRVRASP 393 (502)
T ss_pred ceEEEecCEEEEecCCCCCcceEEecCC---CCCCCCcEEEEEeeEEecCc
Confidence 6788999988631 12 322111 11234568899999998753
No 108
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=79.46 E-value=20 Score=33.31 Aligned_cols=107 Identities=9% Similarity=0.032 Sum_probs=69.5
Q ss_pred EEEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCC
Q 036371 122 YQLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG 196 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~ 196 (245)
+..+++..+|++|+|.... .+ ....++...+.+|.+.+..|.. .... ..-..++|+|.+.=| +-.|
T Consensus 310 v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTL-----y~~~-~Rqyy~~C~I~GtVD---FIFG 380 (529)
T PLN02170 310 AMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSL-----YTHS-KRQFYRETDITGTVD---FIFG 380 (529)
T ss_pred EEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcc-----eeCC-CCEEEEeeEEccccc---eecc
Confidence 3489999999999997432 22 2344699999999999965443 3333 355779999987644 2233
Q ss_pred CeeEEEEeeEEcCC-----ce-EEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 197 TKNLWIERVTCGPA-----HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 197 ~~ni~i~n~~~~~~-----~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
.-...++||++..- .| |.- .|. .....-..+.|.||++...
T Consensus 381 ~a~avFq~C~I~~~~~~~~~g~ITA--q~R-~~~~~~~Gfvf~~C~it~~ 427 (529)
T PLN02170 381 NSAVVFQSCNIAARKPSGDRNYVTA--QGR-SDPNQNTGISIHNCRITAE 427 (529)
T ss_pred cceEEEeccEEEEecCCCCceEEEe--cCC-CCCCCCceEEEEeeEEecC
Confidence 45788999988631 12 322 111 1123345789999999764
No 109
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=79.30 E-value=18 Score=33.99 Aligned_cols=108 Identities=9% Similarity=0.028 Sum_probs=71.5
Q ss_pred EEEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCC
Q 036371 122 YQLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG 196 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~ 196 (245)
+..+++..++++|+|.... .+ .-..++...+.+|.+.+..|....+ . ..-..++|+|.+.=| +-.|
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~-----~-~rq~y~~C~I~GtvD---FIFG 412 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAH-----A-QRQFYRECNIYGTVD---FIFG 412 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccC-----C-CceEEEeeEEecccc---eeec
Confidence 3388999999999987532 22 2345799999999999976544333 2 346789999987644 3334
Q ss_pred CeeEEEEeeEEcCC------ce-EEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 197 TKNLWIERVTCGPA------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 197 ~~ni~i~n~~~~~~------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
.-...++||++..- .+ |..- |. .....-..+.|.||++....
T Consensus 413 ~a~avfq~c~i~~~~~~~~~~~~iTA~--~r-~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 413 NSAVVFQNCNILPRRPMKGQQNTITAQ--GR-TDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred cceEEEeccEEEEecCCCCCCceEEec--CC-CCCCCCceEEEEccEEecCC
Confidence 56789999998621 12 3321 11 11234567899999998653
No 110
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=79.27 E-value=15 Score=34.56 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=70.8
Q ss_pred EecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCe
Q 036371 124 LQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTK 198 (245)
Q Consensus 124 ~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ 198 (245)
.+++..++++|+|.... .+ .-..++...+.+|.|.+..|... ... ..-..++|+|.+.=|-| .|.-
T Consensus 361 ~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy-----~~~-~rq~y~~c~I~GtvDFI---FG~a 431 (587)
T PLN02313 361 GERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLY-----VHS-NRQFFVKCHITGTVDFI---FGNA 431 (587)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhc-----cCC-CcEEEEeeEEeecccee---ccce
Confidence 88999999999987542 22 23457999999999998654433 332 34588999999764433 3456
Q ss_pred eEEEEeeEEcCC---ce--EEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 199 NLWIERVTCGPA---HG--ISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 199 ni~i~n~~~~~~---~G--i~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
...++||++..- .| -.|--.|.. +...-..+.|.||++....
T Consensus 432 ~avfq~c~i~~r~~~~~~~~~iTAqgr~-~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 432 AAVLQDCDINARRPNSGQKNMVTAQGRS-DPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred eEEEEccEEEEecCCCCCcceEEecCCC-CCCCCceEEEEecEEecCC
Confidence 899999998631 11 122112211 1234568899999998654
No 111
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=79.23 E-value=22 Score=25.90 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=46.8
Q ss_pred EecEEEEeeEEecCC---CeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEe-cEEeeCCeeEE
Q 036371 124 LQNIRINGLLSLNSQ---MFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMN-CTIKTGDDCIP 192 (245)
Q Consensus 124 ~~nv~i~~v~i~n~~---~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n-~~i~~~dD~i~ 192 (245)
+.+..+.+-.+.+.. .+++.+..+.+..+.+..+. .. .. .+|++++.+....+.+ ..+....|++.
T Consensus 75 ~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 75 TGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred ccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 566677777776653 88898888888877777776 21 11 6899999888888877 55566666654
No 112
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=79.22 E-value=24 Score=32.70 Aligned_cols=107 Identities=6% Similarity=-0.037 Sum_probs=69.9
Q ss_pred EEEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCC
Q 036371 122 YQLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG 196 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~ 196 (245)
+..+++..++++|+|.... .+ ....++...+.+|.+.+..| -+.... ..-..++|+|.+.=| +-.|
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QD-----TLy~~~-~Rqyy~~C~I~GtVD---FIFG 360 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQD-----TLYTHT-MRQFYRECRITGTVD---FIFG 360 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCC-----eeEeCC-CCEEEEeeEEeeccc---EEec
Confidence 3388999999999987532 22 23346899999999998654 343333 345778999987644 2233
Q ss_pred CeeEEEEeeEEcCC------ce-EEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 197 TKNLWIERVTCGPA------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 197 ~~ni~i~n~~~~~~------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
.-...++||++..- .| |.--+- .....-....|.||++...
T Consensus 361 ~a~avf~~C~i~~~~~~~~~~~~iTAq~r---~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 361 DATAVFQNCQILAKKGLPNQKNTITAQGR---KDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred CceEEEEccEEEEecCCCCCCceEEecCC---CCCCCCcEEEEEeeEEecC
Confidence 45789999998631 12 332211 1123455789999999864
No 113
>PLN02304 probable pectinesterase
Probab=79.11 E-value=35 Score=30.32 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=68.9
Q ss_pred EEEecEEEEeeEEecCCC---------eEE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeE
Q 036371 122 YQLQNIRINGLLSLNSQM---------FHI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCI 191 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~---------~~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i 191 (245)
+..+++..++|+|+|... ..+ ....++...+.+|.+....|.. .... .....++|+|.+.=|-|
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTL-----y~~~-gR~Yf~~CyIeG~VDFI 232 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTL-----HDDR-GRHYFKDCYIQGSIDFI 232 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEeccccee-----EeCC-CCEEEEeeEEcccccEE
Confidence 338899999999998742 122 2334799999999999965433 3222 35778999998764422
Q ss_pred EecCCCeeEEEEeeEEcCC-----------ce-EEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 192 PIGPGTKNLWIERVTCGPA-----------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 192 ~i~~~~~ni~i~n~~~~~~-----------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
.|.-...+++|++..- .| |.--+ ......-....|.||++...
T Consensus 233 ---FG~g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~---Rt~~~~~~GfvF~~C~itg~ 287 (379)
T PLN02304 233 ---FGDARSLYENCRLISMANPVPPGSKSINGAVTAHG---RTSKDENTGFSFVNCTIGGT 287 (379)
T ss_pred ---eccceEEEEccEEEEecCCcccccccCceEEEecC---CCCCCCCceEEEECCEEccC
Confidence 2334678999988631 12 22211 11224466899999999764
No 114
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=78.18 E-value=21 Score=32.95 Aligned_cols=64 Identities=6% Similarity=0.055 Sum_probs=47.6
Q ss_pred EeCcccEEEEeEEEECCCCC--CCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCC
Q 036371 144 INGCKDVHIEGVTVIAPGNS--PNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPA 210 (245)
Q Consensus 144 ~~~~~~i~i~n~~i~~~~~~--~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~ 210 (245)
....+++..+|++|.+.... ..+.++.+. +....+.+|.|.+..|.+..+.+ .-.+++|++.+.
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~-~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~ 331 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSIT-SDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGT 331 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEec-CCcEEEEcceeecccchheeCCC--cEEEEeeEEEec
Confidence 34558999999999986432 245556665 48899999999999998887764 357888887653
No 115
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=78.01 E-value=26 Score=32.34 Aligned_cols=108 Identities=8% Similarity=-0.035 Sum_probs=70.6
Q ss_pred EecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCe
Q 036371 124 LQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTK 198 (245)
Q Consensus 124 ~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ 198 (245)
.+++..++++|+|.... .+ .-..++...+.+|.|.+..|.. ... +..-..++|+|.+.=|-| .|.-
T Consensus 283 g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTL-----y~~-~~RqyyrdC~I~GtVDFI---FG~a 353 (509)
T PLN02488 283 GDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDAL-----YPH-RDRQFYRECFITGTVDFI---CGNA 353 (509)
T ss_pred cCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcce-----eeC-CCCEEEEeeEEeeccceE---ecce
Confidence 88899999999987532 22 2334699999999999865443 333 345788999999764433 3456
Q ss_pred eEEEEeeEEcCC-----ceEEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 199 NLWIERVTCGPA-----HGISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 199 ni~i~n~~~~~~-----~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
...++||++..- ..-.|--.+. .....-..+.|.||++....
T Consensus 354 ~avFq~C~I~sr~~~~~~~~~ITAq~R-~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 354 AAVFQFCQIVARQPMMGQSNVITAQSR-ESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred EEEEEccEEEEecCCCCCCEEEEeCCC-CCCCCCcEEEEEeeEEecCC
Confidence 899999998631 1112211211 11233457899999998754
No 116
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=77.82 E-value=22 Score=33.55 Aligned_cols=107 Identities=6% Similarity=-0.047 Sum_probs=71.3
Q ss_pred EEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCC
Q 036371 123 QLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGT 197 (245)
Q Consensus 123 ~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~ 197 (245)
..+++..++++|+|.... .+ ....++...+.+|.+.+..|.... . ...-..++|+|.+.=| +-.|.
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~-----~-~~Rqyy~~C~I~GtVD---FIFG~ 440 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYA-----Q-THRQFYRSCVITGTID---FIFGD 440 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeeccccccc-----C-CCcEEEEeeEEEeecc---EEecc
Confidence 389999999999996432 22 234579999999999997654433 2 2457899999997644 33345
Q ss_pred eeEEEEeeEEcCC------ce-EEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 198 KNLWIERVTCGPA------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 198 ~ni~i~n~~~~~~------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
-...++||++..- .| |.--+- .+...-..+.|.||++....
T Consensus 441 a~avf~~C~i~~~~~~~~~~~~iTAq~r---~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 441 AAAIFQNCLIFVRKPLPNQQNTVTAQGR---VDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred eeEEEEecEEEEecCCCCCCceEEecCC---CCCCCCceEEEEeeEEecCc
Confidence 6789999998632 12 332111 11234567899999998753
No 117
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=76.10 E-value=24 Score=33.24 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=70.8
Q ss_pred EEEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCC
Q 036371 122 YQLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG 196 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~ 196 (245)
+..+++..++++|+|.... .+ .-..++...+.+|.|.+..|.... .. ..-..++|+|.+.=|-| .|
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~-----~~-~Rqyy~~C~I~GtVDFI---FG 414 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYV-----HS-HRQFFRDCTVSGTVDFI---FG 414 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhcc-----CC-CcEEEEeeEEecccceE---cc
Confidence 3388999999999987542 22 233469999999999986544332 32 35678999998764432 24
Q ss_pred CeeEEEEeeEEcC---Cce--EEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 197 TKNLWIERVTCGP---AHG--ISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 197 ~~ni~i~n~~~~~---~~G--i~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
.-...++||++.. ..| -.|--.+.. ....-..+.|.||++....
T Consensus 415 ~a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 415 DAKVVLQNCNIVVRKPMKGQSCMITAQGRS-DVRESTGLVLQNCHITGEP 463 (572)
T ss_pred CceEEEEccEEEEecCCCCCceEEEeCCCC-CCCCCceEEEEeeEEecCc
Confidence 4578999999863 111 222111111 1233457899999998754
No 118
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=76.01 E-value=20 Score=33.80 Aligned_cols=107 Identities=7% Similarity=0.020 Sum_probs=70.8
Q ss_pred EEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCC
Q 036371 123 QLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGT 197 (245)
Q Consensus 123 ~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~ 197 (245)
..+++..++++|+|.... .+ .-..++...+.+|.+.+..|.... .. ..-..++|+|.+.=| +-.|.
T Consensus 358 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~-----~~-~Rqyy~~C~I~GtVD---FIFG~ 428 (587)
T PLN02484 358 TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYV-----HS-NRQFFRECDIYGTVD---FIFGN 428 (587)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCccccc-----CC-CcEEEEecEEEeccc---eeccc
Confidence 388999999999987532 22 233469999999999997554333 32 456889999987634 33345
Q ss_pred eeEEEEeeEEcCC------ce-EEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 198 KNLWIERVTCGPA------HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 198 ~ni~i~n~~~~~~------~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
-...++||++..- .| |.--+- .....-..+.|.||++....
T Consensus 429 a~avfq~C~i~~~~~~~~~~~~ITAq~r---~~~~~~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 429 AAVVLQNCSIYARKPMAQQKNTITAQNR---KDPNQNTGISIHACRILAAS 476 (587)
T ss_pred ceeEEeccEEEEecCCCCCceEEEecCC---CCCCCCcEEEEEeeEEecCC
Confidence 6789999998631 12 332111 11234568899999998643
No 119
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=75.98 E-value=20 Score=34.37 Aligned_cols=110 Identities=10% Similarity=0.027 Sum_probs=71.9
Q ss_pred EEEecEEEEeeEEecCCC----eEE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCC
Q 036371 122 YQLQNIRINGLLSLNSQM----FHI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG 196 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~----~~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~ 196 (245)
+..+++..+|++|+|... ..+ ....++...+.+|.|.+..|.... . ...-..++|+|.+.=|-| .|
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~-----~-~~Rqyy~~C~I~GtVDFI---FG 404 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYA-----H-SHRQFYRDCTISGTIDFL---FG 404 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhcc-----C-CCcEEEEeCEEEEeccEE---ec
Confidence 338899999999998753 222 234479999999999986554333 3 245688999998764422 34
Q ss_pred CeeEEEEeeEEcCC-----ceEEEeccCcCCCCCCeEEEEEEeEEEECCc
Q 036371 197 TKNLWIERVTCGPA-----HGISIGSLGKDMNDEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 197 ~~ni~i~n~~~~~~-----~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~ 241 (245)
.-...++||++..- ..-.|--.|.. +...-..+.|.||++....
T Consensus 405 ~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 405 DAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred CceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEecCc
Confidence 45789999998631 11222112211 1234567899999998753
No 120
>PLN02634 probable pectinesterase
Probab=75.95 E-value=33 Score=30.21 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=68.6
Q ss_pred EEEecEEEEeeEEecCCC---------eEE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeE
Q 036371 122 YQLQNIRINGLLSLNSQM---------FHI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCI 191 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~---------~~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i 191 (245)
+..+++..++++|+|... ..+ ....++...+.+|.+....|.. ... ...-..++|+|.+.=|-|
T Consensus 146 V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL-----~~~-~gR~yf~~CyIeG~VDFI 219 (359)
T PLN02634 146 VYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTL-----CDD-AGRHYFKECYIEGSIDFI 219 (359)
T ss_pred EECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEeccccee-----eeC-CCCEEEEeeEEcccccEE
Confidence 338889999999998742 111 2334689999999999865433 322 246788999998764433
Q ss_pred EecCCCeeEEEEeeEEcCC---ce-EEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 192 PIGPGTKNLWIERVTCGPA---HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 192 ~i~~~~~ni~i~n~~~~~~---~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
+ |.-...+++|++... .| |.. .+. .....-....|.||++...
T Consensus 220 -F--G~g~a~Fe~C~I~s~~~~~g~ITA--~~R-~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 220 -F--GNGRSMYKDCELHSIASRFGSIAA--HGR-TCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred -c--CCceEEEeccEEEEecCCCcEEEe--CCC-CCCCCCcEEEEEcCEEcCC
Confidence 2 344678999998742 23 332 111 1123345789999999754
No 121
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=75.42 E-value=24 Score=32.96 Aligned_cols=109 Identities=9% Similarity=0.019 Sum_probs=70.6
Q ss_pred EEEecEEEEeeEEecCCCe----EE-EEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCC
Q 036371 122 YQLQNIRINGLLSLNSQMF----HI-VINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPG 196 (245)
Q Consensus 122 ~~~~nv~i~~v~i~n~~~~----~i-~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~ 196 (245)
+..+++..++++|+|.... .+ ....++...+.+|.|.+..|....+ . ..-..++|+|.+.=|-| .|
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~-----~-~Rqyy~~C~I~GtVDFI---FG 379 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH-----S-QRQFYRECYIYGTVDFI---FG 379 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccC-----C-CceEEEeeEEeeccceE---ec
Confidence 3488999999999987532 22 2344699999999999976544332 2 34588999998764422 33
Q ss_pred CeeEEEEeeEEcCC-----ceEEEeccCcCCCCCCeEEEEEEeEEEECC
Q 036371 197 TKNLWIERVTCGPA-----HGISIGSLGKDMNDEGVQNVTVIRTVFTGT 240 (245)
Q Consensus 197 ~~ni~i~n~~~~~~-----~Gi~igs~g~~~~~~~~~ni~i~n~~~~~~ 240 (245)
.-...+++|++..- ..-.|--.|.. ....-..+.|.||++...
T Consensus 380 ~a~avf~~C~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 380 NAAAVFQNCIILPRRPLKGQANVITAQGRA-DPFQNTGISIHNSRILPA 427 (539)
T ss_pred ccceEEeccEEEEecCCCCCcceEecCCCC-CCCCCceEEEEeeEEecC
Confidence 45788999988632 11122111111 123456889999999874
No 122
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=66.77 E-value=8.3 Score=18.74 Aligned_cols=9 Identities=44% Similarity=0.497 Sum_probs=3.8
Q ss_pred EEEEecEEe
Q 036371 177 AKIMNCTIK 185 (245)
Q Consensus 177 v~I~n~~i~ 185 (245)
++|++|.+.
T Consensus 4 ~~i~~n~i~ 12 (26)
T smart00710 4 VTIENNTIR 12 (26)
T ss_pred EEEECCEEE
Confidence 344444443
No 123
>PF14262 DUF4353: Domain of unknown function (DUF4353)
Probab=66.41 E-value=79 Score=26.63 Aligned_cols=37 Identities=16% Similarity=0.490 Sum_probs=22.3
Q ss_pred CCcEEEec-CceeEEE------eEEeeccCCCCCeEEEECC-EEEe
Q 036371 32 ESATINVP-KGRYLLG------YVAFNGDCKSSDITFRIDG-TLVA 69 (245)
Q Consensus 32 ~g~~v~ip-~G~Y~~~------~l~l~~~~~s~~~~l~~~g-~l~~ 69 (245)
.+.+|.|. +|+|.+. ++.+.-.-.. .++|.|+| .|..
T Consensus 5 ~~~~vtIt~~GtY~lsGs~~~g~i~V~a~~~~-~v~lvL~gv~it~ 49 (264)
T PF14262_consen 5 SGSTVTITKAGTYVLSGSLSDGQIVVDAGDTD-KVRLVLDGVSITN 49 (264)
T ss_pred eCCEEEEcCCEEEEEEEEccCcEEEEEcCCCc-eEEEEECCeEEeC
Confidence 46788886 5799874 2444421112 68888887 4543
No 124
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=60.61 E-value=61 Score=23.40 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=8.9
Q ss_pred CCeeeccCeecEEEEecEE
Q 036371 166 TDGIHVQLSTNAKIMNCTI 184 (245)
Q Consensus 166 ~dGi~~~~s~~v~I~n~~i 184 (245)
..|+++..+.+..+.++.+
T Consensus 93 ~~Gi~~~~~~~~~~~~N~i 111 (146)
T smart00722 93 GAGIVVTAGSEGLFIGNRI 111 (146)
T ss_pred eEEEEEECCccceEecCeE
Confidence 4455555444444444443
No 125
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=51.48 E-value=53 Score=24.03 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=30.9
Q ss_pred CCcEEEecCceeEEEeEEeeccCCCCCeEEEECCEEEeeccccccCCCcceEEEcCeeceEEEcc-EEe
Q 036371 32 ESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGG-ALD 99 (245)
Q Consensus 32 ~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~nv~I~Gg-~id 99 (245)
.+..|+||+|...+-..... . =-.|.++|+|.+.++.. +.+. +..|.|.|| .+.
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~----~-l~~l~I~G~L~f~~~~~--------~~L~-a~~I~V~~Gg~l~ 65 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTP----K-LGSLIIGGTLIFDDDRD--------ITLR-AEYILVEGGGRLI 65 (125)
T ss_pred CCCEEEECCCCEEEEcCCCh----h-eeEEEEEEEEEEccCCC--------CEEE-EEEEEECCCCeEE
Confidence 57899999997544322211 0 12344488888866511 2233 567777773 443
No 126
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=45.09 E-value=1e+02 Score=26.87 Aligned_cols=112 Identities=11% Similarity=0.089 Sum_probs=62.7
Q ss_pred EecEEEEeeEEecCCCeE---------EEEeCcccEEEEeEEEECCCCCC--CCCeeec--c--CeecEEEEecEEeeCC
Q 036371 124 LQNIRINGLLSLNSQMFH---------IVINGCKDVHIEGVTVIAPGNSP--NTDGIHV--Q--LSTNAKIMNCTIKTGD 188 (245)
Q Consensus 124 ~~nv~i~~v~i~n~~~~~---------i~~~~~~~i~i~n~~i~~~~~~~--~~dGi~~--~--~s~~v~I~n~~i~~~d 188 (245)
-.++.++++++.|...-+ ..-...+.+.++||.+....+.. ..-|... . ..-.-+++||+|+.-=
T Consensus 188 ~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~Gdv 267 (405)
T COG4677 188 NNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDV 267 (405)
T ss_pred cCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccc
Confidence 566777777777764332 23456789999999999865421 0111111 0 0124578999998653
Q ss_pred eeEEecCCCeeEEEEeeEEcC--C----ce-EEEeccCcCCCCCCeEEEEEEeEEEECCcc
Q 036371 189 DCIPIGPGTKNLWIERVTCGP--A----HG-ISIGSLGKDMNDEGVQNVTVIRTVFTGTQN 242 (245)
Q Consensus 189 D~i~i~~~~~ni~i~n~~~~~--~----~G-i~igs~g~~~~~~~~~ni~i~n~~~~~~~~ 242 (245)
| +-.|+--.++.+|.|.- . .| |.--|- -.+-.....+=|++|....+
T Consensus 268 D---fIfGsgtaVFd~c~i~~~d~r~~~~gYIfApST----~~~~~YGflalNsrfna~g~ 321 (405)
T COG4677 268 D---FIFGSGTAVFDNCEIQVVDSRTQQEGYIFAPST----LSGIPYGFLALNSRFNASGD 321 (405)
T ss_pred e---EEeccceEEeccceEEEeccCCCcceeEeccCC----CCCCceeEEEEeeeeecCCC
Confidence 4 32334456777777641 1 23 332221 12335566778888875543
No 127
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=40.77 E-value=2.9e+02 Score=25.28 Aligned_cols=183 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhhcCCCcEEEecCceeEEEeEEeeccCCCCCeEEEEC--CEEEeeccccccCCCcceEEEcCeeceE
Q 036371 15 DSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRID--GTLVAPADYCVLGQADNWLSFEGVSGVS 92 (245)
Q Consensus 15 ddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~--g~l~~~~~~~~~~~~~~~i~~~~~~nv~ 92 (245)
|--+.-+++++.+ .-++.+++-.|+|....+.+. | ++.+.++ +.+ ++-|.
T Consensus 33 D~iEea~~~l~e~---~~e~LIFlH~G~~e~~~i~I~----s-dvqiiGAs~~di--------------------a~sVv 84 (625)
T KOG1777|consen 33 DHIEEALRFLDEN---DEEKLIFLHEGTHETETIRIT----S-DVQIIGASPSDI--------------------ATSVV 84 (625)
T ss_pred hhHHHHhhhcccc---cccceEEEEeccccceEEEEc----C-CeeEeccCCccc--------------------eeeEE
Q ss_pred EEccEEeCCCCcccccccCCCCCCCCceEEEEecEEEEeeEEecCCCeEEEEeCcccE------EEEeEEEECCCCCCCC
Q 036371 93 IIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDV------HIEGVTVIAPGNSPNT 166 (245)
Q Consensus 93 I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~i------~i~n~~i~~~~~~~~~ 166 (245)
|+| .....++..++.-+--++++-.|-..-+...|.++ .+++|.|..+...+.+
T Consensus 85 le~--------------------~~~t~l~F~~~AY~Gy~Tvkf~~d~~h~~h~~ld~~~d~~p~ie~c~i~s~~~~g~A 144 (625)
T KOG1777|consen 85 LEG--------------------RHATTLEFQESAYVGYVTVKFEPDQEHHAHVCLDIEVDASPAIEECIIRSTGGVGAA 144 (625)
T ss_pred Eec--------------------ccccEEEEeecceEEEEEEEeccccccceeEEEeeccCCCcccccccccCCCccCcc
Q ss_pred ---------------------CeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCCce---EEEeccCcCC
Q 036371 167 ---------------------DGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHG---ISIGSLGKDM 222 (245)
Q Consensus 167 ---------------------dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~G---i~igs~g~~~ 222 (245)
-|+.+.---.-.++.|.|...-++=......-+=++++|+|..+.+ +....-..+.
T Consensus 145 vcv~g~a~P~~~~c~isDceNvglyvTd~a~g~yEh~ei~~NalA~vwvknha~p~~R~~~ih~G~dvGiftf~hg~Gy~ 224 (625)
T KOG1777|consen 145 VCVPGEAEPEIKLCAISDCENVGLYVTDHAQGIYEHCEISRNALAGVWVKNHAFPTMRNCTIHHGRDVGIFTFEHGQGYF 224 (625)
T ss_pred cccCCccCcceeecccccCcceeEEEEeccccceecchhccccccceeeccccChhhhhceeecCCccceEEeccCcCCC
Q ss_pred CCCCeEEEEEEeEEEECCccccC
Q 036371 223 NDEGVQNVTVIRTVFTGTQNGLL 245 (245)
Q Consensus 223 ~~~~~~ni~i~n~~~~~~~~g~~ 245 (245)
...++..-.++.+.+..-.++++
T Consensus 225 e~cd~~qnlisg~eVkf~anp~~ 247 (625)
T KOG1777|consen 225 ESCDIHQNLISGIEVKFRANPIV 247 (625)
T ss_pred ccchHHHhhhcceEEEeeccceE
No 128
>PRK09752 adhesin; Provisional
Probab=39.05 E-value=4.7e+02 Score=27.21 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=46.8
Q ss_pred EEEeCcccEEEEeEEEECCCCCCCCCeeeccCe-----ecEEEEecEEeeCC----eeEEecCCCeeEEEEeeEEcCC--
Q 036371 142 IVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLS-----TNAKIMNCTIKTGD----DCIPIGPGTKNLWIERVTCGPA-- 210 (245)
Q Consensus 142 i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s-----~~v~I~n~~i~~~d----D~i~i~~~~~ni~i~n~~~~~~-- 210 (245)
|.-.....+++.++.+....-....-+|..... -.+.|.++.|.+.. .+=+|.....++.|.||.|...
T Consensus 115 Iya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs~ng~vtIsnS~F~nN~A 194 (1250)
T PRK09752 115 IFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQA 194 (1250)
T ss_pred EEecCcceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEEccCcEEEEeeEEeCCcc
Confidence 433334456777777776421112334555432 13677777776441 1112222233566666666432
Q ss_pred ---------ceEEEeccCcCCC-CCCeEEEEEEeEEEECCc
Q 036371 211 ---------HGISIGSLGKDMN-DEGVQNVTVIRTVFTGTQ 241 (245)
Q Consensus 211 ---------~Gi~igs~g~~~~-~~~~~ni~i~n~~~~~~~ 241 (245)
+|-+|-....... ...-.++.|.|+.|.++.
T Consensus 195 ~~s~s~s~g~GGAIY~~~~~~~~~~~s~~liI~NSsFtnNs 235 (1250)
T PRK09752 195 YTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNT 235 (1250)
T ss_pred cccccccCCCceEEEeccCCCccccccceEEEeccEEEccc
Confidence 3434433211100 012345667777777653
No 129
>PF02741 FTR_C: FTR, proximal lobe; InterPro: IPR002770 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5S_B 1M5H_E 1FTR_C 2FHJ_B 2FHK_D.
Probab=35.40 E-value=47 Score=25.14 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=21.4
Q ss_pred cchHHHHHHHHHHHhhcCCCcEEEecCcee--EEEe
Q 036371 14 ADSTQAFAKAWAAACASTESATINVPKGRY--LLGY 47 (245)
Q Consensus 14 tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y--~~~~ 47 (245)
..-.+|+++.|++||+ ..+.+.|.+|.| .+++
T Consensus 109 ~av~~Amr~Gi~Aa~~--~~Gv~~IsAGNYGGkLG~ 142 (150)
T PF02741_consen 109 EAVAEAMRAGIEAACA--VPGVVRISAGNYGGKLGP 142 (150)
T ss_dssp HHHHHHHHHHHHHHTT--STTEEEEE---STTSSSS
T ss_pred HHHHHHHHHHHHHHhc--CCCeEEEecCCcCCccCc
Confidence 3456788999988863 578999999998 4444
No 130
>PHA00672 hypothetical protein
Probab=33.34 E-value=1.1e+02 Score=22.71 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=11.2
Q ss_pred cEEEecCceeEEEeE
Q 036371 34 ATINVPKGRYLLGYV 48 (245)
Q Consensus 34 ~~v~ip~G~Y~~~~l 48 (245)
.++.||+|+-+++.+
T Consensus 50 Rei~IPkGt~LtG~~ 64 (152)
T PHA00672 50 RTIRIPAGVALTGAL 64 (152)
T ss_pred EEEeccCceeeeeee
Confidence 468889998877653
No 131
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=30.69 E-value=45 Score=23.22 Aligned_cols=39 Identities=28% Similarity=0.327 Sum_probs=19.8
Q ss_pred ecccccC-CCCcchHHHHHHHHHHHhhcCCCcEEEecCceeEEE
Q 036371 4 LRFGAKG-NGVADSTQAFAKAWAAACASTESATINVPKGRYLLG 46 (245)
Q Consensus 4 ~~~Ga~~-dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~ 46 (245)
.|||..+ +.-...-..|++||..-... ..+ +..|+|+..
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~~--~~t--v~~GtYr~~ 49 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIKN--PDT--VEKGTYRRV 49 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH---TT---EE--BETTS
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhCC--CCe--EeccceecC
Confidence 5899888 44344557788888765443 345 449999853
No 132
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=26.26 E-value=74 Score=28.93 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=30.6
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCCcEEEecCceeEEEe
Q 036371 10 GNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGY 47 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~ 47 (245)
+|+.--..+|||+|++-+ +.++-.+|++..|-|+..|
T Consensus 61 ~D~~~~se~a~~~~lev~-aANgv~~iv~~~~g~~~TP 97 (524)
T COG0033 61 GDTHALSEPAIQSALEVL-AANGVEVIVQGQGGFTPTP 97 (524)
T ss_pred CCcccccHHHHHHHHHHH-HhcCceEEEecCCCccCch
Confidence 578889999999999876 5567788888888888765
No 133
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=26.09 E-value=73 Score=24.95 Aligned_cols=29 Identities=7% Similarity=0.141 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHhhcC--CCcEEEecCceeE
Q 036371 15 DSTQAFAKAWAAACAST--ESATINVPKGRYL 44 (245)
Q Consensus 15 ddt~Aiq~Ai~~a~~~~--~g~~v~ip~G~Y~ 44 (245)
.|.+++.++++.. .+. +...++||.||..
T Consensus 86 ~d~~~i~~~~~~l-~~~~~~~~lviFPEGTr~ 116 (193)
T cd07990 86 KDEKTIKRQLKRL-KDSPEPFWLLIFPEGTRF 116 (193)
T ss_pred HhHHHHHHHHHHH-hcCCCCcEEEEeCcccCC
Confidence 4678888888765 432 5678999999943
No 134
>PF13918 PLDc_3: PLD-like domain
Probab=25.32 E-value=84 Score=24.75 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=16.5
Q ss_pred CCCCcchHHHHHHHHHHH
Q 036371 10 GNGVADSTQAFAKAWAAA 27 (245)
Q Consensus 10 ~dg~tddt~Aiq~Ai~~a 27 (245)
+.|+|+|-+||.++|+.|
T Consensus 77 ~~gRT~DldAIl~~I~~A 94 (177)
T PF13918_consen 77 PKGRTLDLDAILSVIDSA 94 (177)
T ss_pred CCCCCcHHHHHHHHHHhH
Confidence 568999999999999987
No 135
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=24.32 E-value=2.8e+02 Score=19.96 Aligned_cols=12 Identities=8% Similarity=0.412 Sum_probs=5.1
Q ss_pred EEEcCeeceEEE
Q 036371 83 LSFEGVSGVSII 94 (245)
Q Consensus 83 i~~~~~~nv~I~ 94 (245)
+.+.++++-+|.
T Consensus 23 v~i~~~~~c~i~ 34 (120)
T PF07986_consen 23 VHIDNCKNCTIV 34 (120)
T ss_dssp EEEES-BS-EEE
T ss_pred EEEeCCCCCEEE
Confidence 445555555544
No 136
>COG0098 RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]
Probab=22.73 E-value=82 Score=24.85 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHHhhcCCCcEEEecCce
Q 036371 14 ADSTQAFAKAWAAACASTESATINVPKGR 42 (245)
Q Consensus 14 tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~ 42 (245)
.+-.+|||+|+++| .-..+.+|-+.
T Consensus 67 ~EV~~AIrKAi~~A----k~nii~V~~~~ 91 (181)
T COG0098 67 KEVPEAIRKAIEDA----KKNIIEVPRGN 91 (181)
T ss_pred hhhHHHHHHHHHHH----HhCeEEEecCC
Confidence 47889999999987 23578888663
No 137
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=22.53 E-value=88 Score=26.40 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhcCCCcEEEecCce
Q 036371 19 AFAKAWAAACASTESATINVPKGR 42 (245)
Q Consensus 19 Aiq~Ai~~a~~~~~g~~v~ip~G~ 42 (245)
+|.+.|.++ ++..+.+||+|.|=
T Consensus 101 ~~~~~l~~~-A~~~g~~i~ipSGA 123 (267)
T PRK13301 101 ALRARLIAA-AEAGGARIRVPAGA 123 (267)
T ss_pred HHHHHHHHH-HHhCCCEEEEeChH
Confidence 345555555 44588999999995
No 138
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=21.39 E-value=1.4e+02 Score=26.31 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEecCceeEEEe
Q 036371 16 STQAFAKAWAAACASTESATINVPKGRYLLGY 47 (245)
Q Consensus 16 dt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~ 47 (245)
|-..+.++|..++...++-+|++.||+|++++
T Consensus 227 ~~~~~~~~i~~~~~~~~~~~l~~EPGR~lva~ 258 (368)
T cd06840 227 DLDALDAALAAAKAAHPQYQLWMEPGRFIVAE 258 (368)
T ss_pred CHHHHHHHHHHHHhhCCCcEEEEecCceeeec
Confidence 44566677765544445689999999999874
No 139
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=21.21 E-value=1.2e+02 Score=24.26 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHhhcCCCcEEEecCcee
Q 036371 15 DSTQAFAKAWAAACASTESATINVPKGRY 43 (245)
Q Consensus 15 ddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y 43 (245)
...+++++|.+.. + .+...++||.|+-
T Consensus 83 ~~~~~~~~~~~~L-~-~G~~l~IFPEGtr 109 (210)
T cd07986 83 KNRESLREALRHL-K-NGGALIIFPAGRV 109 (210)
T ss_pred hhHHHHHHHHHHH-h-CCCEEEEECCccc
Confidence 4556777777654 4 4778889999984
No 140
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=20.94 E-value=66 Score=25.00 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=11.6
Q ss_pred CCCcEEEecCceeE
Q 036371 31 TESATINVPKGRYL 44 (245)
Q Consensus 31 ~~g~~v~ip~G~Y~ 44 (245)
..|..|++|||.|.
T Consensus 121 ekGDlivlPaGiyH 134 (179)
T KOG2107|consen 121 EKGDLIVLPAGIYH 134 (179)
T ss_pred ecCCEEEecCccee
Confidence 35889999999974
Done!