BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036374
(706 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 478 bits (1231), Expect = e-135, Method: Compositional matrix adjust.
Identities = 275/632 (43%), Positives = 369/632 (58%), Gaps = 30/632 (4%)
Query: 81 TTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGG 140
TTRSWDF+GFP TV R VES++++GVLD GIWPES FDD+ F PPP KWKG C+
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKG-TCETS 59
Query: 141 QNFTCNNKIIGARYY--------SGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKG 192
NF CN KIIGAR Y +N R+ GHGTH AS AAG LV A+ GL G
Sbjct: 60 NNFRCNRKIIGARSYHIGRPISPGDVNGPRDTN-GHGTHTASTAAGGLVSQANLYGLGLG 118
Query: 193 NVRGAVPSARIAAYRVCHYPWP--CNEXXXXXXXXXXXXXGVDIILTGATYGFAFDFAED 250
RG VP ARIAAY+VC W C++ GVDII + D
Sbjct: 119 TARGGVPLARIAAYKVC---WNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVD 175
Query: 251 AVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTT 310
A+AIG+FHA+E+GILT+ GN GP +T ++PW+L+VA S++DR F+ + +G+G +
Sbjct: 176 AIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQS 235
Query: 311 LVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGD 370
G ++N T +PL G+ + + SR C+ ++ NL+KGKI++C+ G
Sbjct: 236 FQGVSIN--TFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGP 293
Query: 371 VETFRV--GALGSIQPASTI-MSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMA 427
E F+ GA G + ++T + P P+ +L D YI S P I +S
Sbjct: 294 HEFFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTT 353
Query: 428 IKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMD--HRFVKY 485
I + +APVV FS RGP++ T D+IKPDIS P V+ILAA+ PS P+ R +
Sbjct: 354 ILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW-----PSVAPVGGIRRNTLF 408
Query: 486 NILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHI 545
NI+SGTS+ YV++++P WSP++IKSALMTTA MN N EF YGSGH+
Sbjct: 409 NIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHV 468
Query: 546 DPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSIATKDLNLPSIA 605
+P+KA PGLVY+ E DY+K LCG GY+ +R I+GD S+C G + DLN PS
Sbjct: 469 NPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFG 528
Query: 606 AQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVV 665
V F+ F RT+T+V +TY+A + + I+V P+ LSF + D+KSF +
Sbjct: 529 LSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQ-GLTISVNPNVLSFNGLGDRKSFTL 587
Query: 666 TVDGAILQANHTVSASLLWSDGTHNVRSPIVV 697
TV G+I VSASL+WSDG H VRSPI +
Sbjct: 588 TVRGSI--KGFVVSASLVWSDGVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 298 bits (762), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 222/661 (33%), Positives = 325/661 (49%), Gaps = 65/661 (9%)
Query: 81 TTRSWDFMGFPETVKREPT--VESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACK 138
TT + DF+ + P + D+I+ VLD+GIWPES F D PK+WKG CK
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKG-ICK 59
Query: 139 GGQNFT---CNNKIIGARYYSG------------INTTREYQLGHGTHMASIAAGNLVVG 183
G F CN K+IGA Y++ +N+ R+ GHGTH ASI AGN G
Sbjct: 60 PGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTD-GHGTHCASITAGNFAKG 118
Query: 184 ASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEXXXX----XXXXXXXXXGVDIILTGA 239
S G A G RG P AR+A Y+ NE GVD+I
Sbjct: 119 VSHFGYAPGTARGVAPRARLAVYKFSF-----NEGTFTSDLIAAMDQAVADGVDMI--SI 171
Query: 240 TYGFAF-DFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRP 298
+YG+ F EDA++I +F AM KG+L + GN GP S +PWIL VA DR
Sbjct: 172 SYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRT 231
Query: 299 FIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVK 358
F LG+G + G ++ P P+ Y KT + EL S+ EN +
Sbjct: 232 FAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQV-------EN-PE 283
Query: 359 GKILLCDNFRGDVETFRVGALGSIQPASTIMSHPT-------PFPTVILKMEDFERVKLY 411
I++CD+ + R+ ++ A I P P P V++ ++ ++V Y
Sbjct: 284 NTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINY 343
Query: 412 INSTEKPQVHI-LRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGG 470
+ ++ P I + + APVV S RGPS+ I KPDI AP V ILAAY
Sbjct: 344 VKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPN 403
Query: 471 WGPSNHPMDHRF-VKYNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMN 529
++ + Y + SGTS+ +++ HP+WSPS+I+SA+MTTA ++
Sbjct: 404 VFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLD 463
Query: 530 GTVNRGRE---------FDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRL 580
T ++ D G+GH+DP +A +PGLVY+ DY+ +LC + ++ + +
Sbjct: 464 NTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKT 523
Query: 581 ISGDNSSCPEGTSIATKDLNLPSIAAQVEVHNPFSI---KFLRTVTNVGLANTTYKAEVK 637
I+ SS S + DLN PS A + F++ KF RTVTNVG TYKA++K
Sbjct: 524 IA--RSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLK 581
Query: 638 TTSIDVKINVTPDALSFESVNDKKSFVVTVD--GAILQANHTVSASLLWSDGTHNVRSPI 695
+ I+V+P L F++ N+K+S+ +T+ G Q+ + S + + +G H+VRSPI
Sbjct: 582 APK-NSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPI 640
Query: 696 V 696
V
Sbjct: 641 V 641
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 431 DAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSG 490
D V+ FS RGP+ + +KP++ AP I+AA G D+ Y G
Sbjct: 304 DKYDVITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPG 357
Query: 491 TSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
T++ + HP W+P +K+AL+ TA ++ + + YG+G ++ KA
Sbjct: 358 TAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVK--PDEIADIAYGAGRVNAYKA 415
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 148 KIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYR 207
K+IG + TT GHGTH+ASIAAG GA+ + G +G P A++ +
Sbjct: 160 KVIGWVDFVNGKTTPYDDNGHGTHVASIAAG---TGAA----SNGKYKGMAPGAKLVGIK 212
Query: 208 VCH 210
V +
Sbjct: 213 VLN 215
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 27/109 (24%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXX 497
PFS GP + D+ AP V I + GG KY LSGTS+
Sbjct: 179 PFSSVGP--------ELDVMAPGVSICSTLPGG-------------KYGALSGTSMASPH 217
Query: 498 XXXXXXYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L TA + G F YG G I+
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTATKL------GDSFYYGKGLIN 260
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 27/109 (24%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXX 497
PFS GP + D+ AP V I + GG KY LSGT++
Sbjct: 179 PFSSVGP--------ELDVMAPGVSICSTLPGG-------------KYGALSGTAMASPH 217
Query: 498 XXXXXXYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L TA + G F YG G I+
Sbjct: 218 VAGAAALILSKHPNWTNTQVRSSLENTATKL------GDSFYYGKGLIN 260
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY SGTS+
Sbjct: 181 SSVGPEL---DVMAPGVSICSTLPGN-------------KYGAKSGTSMASPHVAGAAAL 224
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 225 ILSKHPNWTNTQVRSSLENT------TTKLGNSFYYGKGLIN 260
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY SGTS+
Sbjct: 190 SSVGPEL---DVMAPGVSICSTLPGN-------------KYGAKSGTSMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY SGTS+
Sbjct: 190 SSVGPEL---DVMAPGVSIXSTLPGN-------------KYGAYSGTSMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY SGTS+
Sbjct: 181 SSVGPEL---DVMAPGVSICSTLPGN-------------KYGAKSGTSMASPHVAGAAAL 224
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 225 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 260
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY SGTS+
Sbjct: 190 SSVGPEL---DVMAPGVSICSTLPGN-------------KYGAKSGTSMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY SGTS+
Sbjct: 190 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAKSGTSMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I++ G KY SGT++
Sbjct: 181 SSVGPEL---DVMAPGVSIVSTLPGN-------------KYGAKSGTAMASPHVAGAAAL 224
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 225 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 260
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I++ G KY SGT++
Sbjct: 181 SSVGPEL---DVMAPGVSIVSTLPGN-------------KYGAKSGTAMASPHVAGAAAL 224
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 225 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 260
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY +GTS+
Sbjct: 190 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLQNT------TTKLGDSFYYGKGLIN 269
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY +GTS+
Sbjct: 190 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLQNT------TTKLGDSFYYGKGLIN 269
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY SGTS+
Sbjct: 190 SSVGPEL---DVMAPGVSIXSTLPGN-------------KYGAYSGTSMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTYLGDSFYYGKGLIN 269
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY SGT +
Sbjct: 190 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAYSGTXMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY +GTS+
Sbjct: 190 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY +GTS+
Sbjct: 190 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY +GTS+
Sbjct: 190 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY SGT +
Sbjct: 190 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAYSGTXMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY SGT +
Sbjct: 181 SSVGPEL---DVMAPGVSICSTLPGN-------------KYGAKSGTXMASPHVAGAAAL 224
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 225 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 260
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY SGT +
Sbjct: 178 SSVGPEL---DVMAPGVSIWSTLPGN-------------KYGAKSGTXMASPHVAGAAAL 221
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 222 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 257
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY SGT +
Sbjct: 190 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAKSGTXMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY +GTS
Sbjct: 190 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAYNGTSXASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY +GT +
Sbjct: 190 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAYNGTXMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXY 504
S + P++ D+ AP V I + G KY +GT +
Sbjct: 190 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAYNGTXMASPHVAGAAAL 233
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 234 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 269
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 19/92 (20%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSP 514
D+ AP V I + GG Y +GTS+ + S HP W+
Sbjct: 197 DVMAPGVSIQSTLPGG-------------TYGAYNGTSMATPHVAGAAALILSKHPTWTN 243
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ ++ L +TA + G F YG G I+
Sbjct: 244 AQVRDRLESTATYL------GSSFYYGKGLIN 269
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSP 514
DI AP V + + Y G Y L+GTS+ V+ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKAT 551
I++ L TA + G YGSG ++ AT
Sbjct: 238 VQIRNHLKNTATSL------GSTNLYGSGLVNAEAAT 268
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSP 514
DI AP V + + Y G Y L+GTS+ V+ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKAT 551
I++ L TA + G YGSG ++ AT
Sbjct: 238 VQIRNHLKNTATSL------GSTNLYGSGLVNAEAAT 268
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 485 YNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGH 544
Y L+GTS+ + S HP+ S S +++ L +TA + G F YG G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 266
Query: 545 ID 546
I+
Sbjct: 267 IN 268
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSP 514
DI AP V + + Y G Y L+GTS+ V+ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKAT 551
I++ L TA + G YGSG ++ AT
Sbjct: 238 VQIRNHLKNTATSL------GSTNLYGSGLVNAEAAT 268
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 485 YNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGH 544
Y L+GTS+ + S HP+ S S +++ L +TA + G F YG G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 266
Query: 545 ID 546
I+
Sbjct: 267 IN 268
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 485 YNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGH 544
Y L+GTS+ + S HP+ S S +++ L +TA + G F YG G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 266
Query: 545 ID 546
I+
Sbjct: 267 IN 268
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 485 YNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGH 544
Y L+GTS+ + S HP+ S S +++ L +TA + G F YG G
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 267
Query: 545 ID 546
I+
Sbjct: 268 IN 269
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 485 YNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGH 544
Y L+GTS+ + S HP+ S S +++ L +TA + G F YG G
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 267
Query: 545 ID 546
I+
Sbjct: 268 IN 269
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 19/97 (19%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSP 514
DI AP V + + Y G Y L+GTS+ V+ +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKAT 551
I++ L TA + G+ N YGSG ++ AT
Sbjct: 238 VQIRNHLKNTATSL-GSTNL-----YGSGLVNAEAAT 268
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 485 YNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGH 544
Y L+GTS+ + S HP+ S S +++ L +TA + G F YG G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 266
Query: 545 ID 546
I+
Sbjct: 267 IN 268
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 348 SLFCLDENLVKGKILLCDNFRGDVETFRV 376
+++ LD +KGK+L+C N+RGDV+ V
Sbjct: 5 AVYVLD---LKGKVLICRNYRGDVDMSEV 30
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 450 DIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFH 509
DI P +S LA G S + Y +GTS+ V S+H
Sbjct: 328 DITVPSVSVDRATGLA-LKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYH 386
Query: 510 PDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
P+ S S +++AL TA ++ GR+ G G I+ V A
Sbjct: 387 PECSASQVRAALNATADDLS---VAGRDNQTGYGMINAVAA 424
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 19/97 (19%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSP 514
DI AP V + + Y G Y L+GTS+ V+ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKAT 551
I++ L TA + G YGSG ++ AT
Sbjct: 238 VQIRNHLKNTATGL------GNTNLYGSGLVNAEAAT 268
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 19/92 (20%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSP 514
D+ AP V I + GG Y +GT + + S HP W+
Sbjct: 197 DVMAPGVSIQSTLPGG-------------TYGAYNGTXMATPHVAGAAALILSKHPTWTN 243
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ ++ L +TA + G F YG G I+
Sbjct: 244 AQVRDRLESTATYL------GNSFYYGKGLIN 269
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 436 VHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSI 493
V FS RGP+K IKPD+ AP IL+A + P + + KY + GTS+
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARS-SLAPDSSFWANHDSKYAYMGGTSM 256
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 19/92 (20%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSP 514
D+ AP V I + GG Y +GT + + S HP W+
Sbjct: 197 DVMAPGVSIQSTLPGG-------------TYGAYNGTCMATPHVAGAAALILSKHPTWTN 243
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ ++ L +TA + G F YG G I+
Sbjct: 244 AQVRDRLESTATYL------GNSFYYGKGLIN 269
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 19/97 (19%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSP 514
DI AP V + + Y G Y L+GT + V+ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKAT 551
I++ L TA + G YGSG ++ AT
Sbjct: 238 VQIRNHLKNTATSL------GSTNLYGSGLVNAEAAT 268
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 19/97 (19%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSP 514
DI AP V + + Y G Y L+GT + V+ +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKAT 551
I++ L TA + G+ N YGSG ++ AT
Sbjct: 238 VQIRNHLKNTATSL-GSTNL-----YGSGLVNAEAAT 268
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 19/92 (20%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSP 514
DI AP V + + Y G Y L+GTS+ V+ +P WS
Sbjct: 191 DIVAPGVNVQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
I++ L TA + G+ N YGSG ++
Sbjct: 238 VQIRNHLKNTATSL-GSTNL-----YGSGLVN 263
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 19/97 (19%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSP 514
DI AP V + + Y G Y L+GT + V+ +P WS
Sbjct: 191 DIVAPGVNVQSTYPG-------------STYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKAT 551
I++ L TA + G+ N YGSG ++ AT
Sbjct: 238 VQIRNHLKNTATSL-GSTNL-----YGSGLVNAEAAT 268
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 436 VHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTS--- 492
V FS RGP+K IKPD+ AP IL+A + P + + KY GTS
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARS-SLAPDSSFWANHDSKYAYXGGTSXAT 258
Query: 493 --IXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTA 525
+ +V++ PS +K+AL+ A
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 49/140 (35%), Gaps = 20/140 (14%)
Query: 145 CNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIA 204
C + +G + T R+ GHGTH+A A N G+ V G P A +
Sbjct: 51 CKDFTVGTNFTDNSCTDRQ---GHGTHVAGSALANGGTGSG--------VYGVAPEADLW 99
Query: 205 AYRV-----CHYPWPCNEXXXXXXXXXXXXXGVDIILTGATYGFAFDFAEDAVAIGAFHA 259
AY+V Y E +I +AV +A
Sbjct: 100 AYKVLGDDGSGYADDIAEAIRHAGDQATALNTKVVINMSLGSSGESSLITNAVD----YA 155
Query: 260 MEKGILTAVPTGNMGPKPAS 279
+KG+L GN GPKP S
Sbjct: 156 YDKGVLIIAAAGNSGPKPGS 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,438,596
Number of Sequences: 62578
Number of extensions: 913541
Number of successful extensions: 1956
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1902
Number of HSP's gapped (non-prelim): 78
length of query: 706
length of database: 14,973,337
effective HSP length: 106
effective length of query: 600
effective length of database: 8,340,069
effective search space: 5004041400
effective search space used: 5004041400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)