Query 036374
Match_columns 706
No_of_seqs 362 out of 2809
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 12:03:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 8.5E-52 1.8E-56 439.5 29.3 286 77-526 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 2.3E-50 5E-55 445.4 23.0 292 88-558 301-619 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 4E-49 8.6E-54 409.7 23.0 271 98-552 1-274 (275)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 9.3E-49 2E-53 404.0 23.1 244 95-530 1-255 (255)
5 cd07497 Peptidases_S8_14 Pepti 100.0 3.2E-48 7E-53 408.8 23.8 286 101-525 1-311 (311)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 9.6E-48 2.1E-52 415.8 26.5 307 93-552 1-346 (346)
7 cd07478 Peptidases_S8_CspA-lik 100.0 6.7E-47 1.5E-51 418.4 28.7 400 99-543 1-455 (455)
8 cd07489 Peptidases_S8_5 Peptid 100.0 8E-47 1.7E-51 402.4 25.7 291 89-555 1-301 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.9E-46 4.1E-51 388.6 24.0 247 94-530 2-254 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 3.2E-45 6.8E-50 387.5 25.7 287 101-550 1-295 (295)
11 cd04857 Peptidases_S8_Tripepti 100.0 5E-45 1.1E-49 391.5 26.9 220 163-528 183-412 (412)
12 cd05561 Peptidases_S8_4 Peptid 100.0 2.5E-45 5.5E-50 374.9 22.8 235 104-543 1-239 (239)
13 cd07483 Peptidases_S8_Subtilis 100.0 2.8E-45 6.1E-50 385.6 22.7 258 102-526 1-291 (291)
14 cd07493 Peptidases_S8_9 Peptid 100.0 4.1E-44 8.9E-49 371.9 25.3 242 103-526 1-261 (261)
15 cd07481 Peptidases_S8_Bacillop 100.0 8.4E-44 1.8E-48 370.1 25.2 247 101-526 1-264 (264)
16 cd07485 Peptidases_S8_Fervidol 100.0 1.6E-43 3.4E-48 369.9 24.3 264 93-524 1-273 (273)
17 cd07487 Peptidases_S8_1 Peptid 100.0 2.8E-43 6E-48 366.5 25.9 258 101-526 1-264 (264)
18 cd07494 Peptidases_S8_10 Pepti 100.0 2.6E-42 5.6E-47 363.1 25.8 257 86-530 6-287 (298)
19 cd07484 Peptidases_S8_Thermita 100.0 1.8E-42 3.9E-47 359.6 24.0 249 83-528 11-259 (260)
20 cd04847 Peptidases_S8_Subtilis 100.0 6.6E-43 1.4E-47 368.6 20.3 264 104-526 1-291 (291)
21 cd04077 Peptidases_S8_PCSK9_Pr 100.0 5.2E-42 1.1E-46 355.0 23.4 233 94-527 17-255 (255)
22 cd04842 Peptidases_S8_Kp43_pro 100.0 1.3E-41 2.8E-46 359.5 26.1 277 97-526 2-293 (293)
23 cd07490 Peptidases_S8_6 Peptid 100.0 8E-42 1.7E-46 353.5 23.2 253 103-526 1-254 (254)
24 cd07496 Peptidases_S8_13 Pepti 100.0 1.9E-41 4.1E-46 356.4 23.7 251 103-524 1-285 (285)
25 cd07498 Peptidases_S8_15 Pepti 100.0 2E-41 4.3E-46 348.0 22.7 241 104-524 1-242 (242)
26 cd07480 Peptidases_S8_12 Pepti 100.0 3.9E-41 8.4E-46 355.9 23.3 264 96-548 2-296 (297)
27 cd04843 Peptidases_S8_11 Pepti 100.0 4.4E-41 9.5E-46 349.8 23.0 248 88-526 2-277 (277)
28 KOG1153 Subtilisin-related pro 100.0 1.1E-41 2.3E-46 351.2 18.1 323 2-526 81-461 (501)
29 cd07473 Peptidases_S8_Subtilis 100.0 3.7E-40 8.1E-45 342.0 24.5 251 102-526 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 6.6E-40 1.4E-44 333.8 23.5 226 103-524 1-229 (229)
31 PF00082 Peptidase_S8: Subtila 100.0 8.3E-41 1.8E-45 351.2 16.8 272 105-552 1-282 (282)
32 cd07491 Peptidases_S8_7 Peptid 100.0 9.2E-40 2E-44 334.5 19.7 217 101-508 2-229 (247)
33 cd04059 Peptidases_S8_Protein_ 100.0 1.3E-39 2.9E-44 344.8 20.1 252 87-526 25-297 (297)
34 cd07482 Peptidases_S8_Lantibio 100.0 3.7E-39 8E-44 340.9 22.4 254 103-524 1-294 (294)
35 cd07492 Peptidases_S8_8 Peptid 100.0 6.9E-39 1.5E-43 324.7 22.2 222 103-526 1-222 (222)
36 cd04848 Peptidases_S8_Autotran 100.0 7.4E-38 1.6E-42 325.8 21.4 243 100-526 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 1.1E-36 2.4E-41 321.7 26.9 349 3-552 51-465 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 5.6E-35 1.2E-39 321.5 20.6 366 166-704 310-693 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 9.6E-34 2.1E-38 289.2 14.1 193 161-524 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 5.2E-31 1.1E-35 268.7 22.8 234 104-524 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 1.5E-23 3.2E-28 237.1 24.8 269 93-552 131-420 (508)
42 KOG3526 Subtilisin-like propro 99.8 6.5E-20 1.4E-24 185.3 6.2 171 93-291 152-334 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 3.9E-17 8.5E-22 176.9 16.4 102 192-297 81-198 (361)
44 PF05922 Inhibitor_I9: Peptida 98.9 1.5E-09 3.3E-14 91.5 5.7 78 3-80 1-82 (82)
45 cd02120 PA_subtilisin_like PA_ 98.9 1.3E-08 2.7E-13 93.5 9.7 113 303-421 2-125 (126)
46 cd02133 PA_C5a_like PA_C5a_lik 98.8 1.9E-08 4.2E-13 94.4 9.3 107 323-446 25-142 (143)
47 PF06280 DUF1034: Fn3-like dom 98.6 1.3E-06 2.9E-11 78.3 13.3 89 604-696 1-112 (112)
48 COG4934 Predicted protease [Po 98.4 5.9E-06 1.3E-10 97.7 17.4 163 93-292 219-395 (1174)
49 KOG3525 Subtilisin-like propro 98.2 5.4E-06 1.2E-10 91.2 10.0 160 88-277 20-188 (431)
50 cd04816 PA_SaNapH_like PA_SaNa 98.0 1.2E-05 2.5E-10 73.4 7.2 78 344-421 29-121 (122)
51 cd02122 PA_GRAIL_like PA _GRAI 97.9 3.2E-05 7E-10 71.8 6.7 80 343-422 43-138 (138)
52 cd02130 PA_ScAPY_like PA_ScAPY 97.8 9.4E-05 2E-09 67.4 9.1 76 345-421 32-121 (122)
53 cd04818 PA_subtilisin_1 PA_sub 97.8 3.6E-05 7.9E-10 69.7 6.0 79 342-421 25-117 (118)
54 PF02225 PA: PA domain; Inter 97.8 1.8E-05 3.9E-10 69.3 3.7 70 343-412 18-101 (101)
55 cd02124 PA_PoS1_like PA_PoS1_l 97.8 0.00012 2.6E-09 67.2 8.9 79 342-421 39-128 (129)
56 cd00538 PA PA: Protease-associ 97.7 5.3E-05 1.2E-09 69.2 6.1 79 343-421 29-125 (126)
57 cd02127 PA_hPAP21_like PA_hPAP 97.7 9.5E-05 2.1E-09 66.7 6.7 78 344-422 21-116 (118)
58 cd02126 PA_EDEM3_like PA_EDEM3 97.6 9.5E-05 2.1E-09 67.7 5.9 76 344-420 27-124 (126)
59 cd02129 PA_hSPPL_like PA_hSPPL 97.6 9.9E-05 2.2E-09 66.3 5.5 74 342-415 28-115 (120)
60 cd02132 PA_GO-like PA_GO-like: 97.4 0.00022 4.9E-09 66.4 5.9 74 344-420 48-137 (139)
61 cd04813 PA_1 PA_1: Protease-as 97.3 0.00028 6E-09 63.6 5.1 72 342-415 25-112 (117)
62 cd02125 PA_VSR PA_VSR: Proteas 97.3 0.00037 8.1E-09 63.8 6.0 78 344-421 22-126 (127)
63 cd04819 PA_2 PA_2: Protease-as 97.2 0.0019 4.1E-08 59.2 9.3 80 324-416 23-121 (127)
64 cd04817 PA_VapT_like PA_VapT_l 97.2 0.00066 1.4E-08 62.8 5.9 63 353-415 51-134 (139)
65 cd02123 PA_C_RZF_like PA_C-RZF 97.1 0.00095 2E-08 63.3 5.7 74 344-417 50-142 (153)
66 PF14874 PapD-like: Flagellar- 96.0 0.12 2.7E-06 45.0 11.8 80 615-698 21-100 (102)
67 cd04815 PA_M28_2 PA_M28_2: Pro 95.5 0.03 6.6E-07 51.8 6.1 68 354-421 35-133 (134)
68 PF10633 NPCBM_assoc: NPCBM-as 94.1 0.24 5.2E-06 41.0 7.5 57 614-671 5-62 (78)
69 PF11614 FixG_C: IG-like fold 93.8 0.56 1.2E-05 42.2 9.9 57 615-673 32-88 (118)
70 cd02128 PA_TfR PA_TfR: Proteas 92.9 0.11 2.4E-06 50.4 3.9 61 354-414 51-155 (183)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 92.7 0.28 6E-06 46.2 6.3 80 325-411 21-131 (151)
72 cd04820 PA_M28_1_1 PA_M28_1_1: 91.9 0.17 3.6E-06 46.8 3.7 54 325-385 23-93 (137)
73 cd04814 PA_M28_1 PA_M28_1: Pro 90.8 0.31 6.8E-06 45.3 4.2 55 324-385 20-97 (142)
74 KOG2442 Uncharacterized conser 90.1 0.72 1.6E-05 50.4 6.8 77 343-422 83-175 (541)
75 PF06030 DUF916: Bacterial pro 89.7 11 0.00024 34.1 13.2 80 602-685 17-119 (121)
76 PF00345 PapD_N: Pili and flag 86.7 16 0.00034 32.9 12.5 69 615-685 15-89 (122)
77 cd02131 PA_hNAALADL2_like PA_h 82.9 0.67 1.4E-05 43.3 1.6 31 355-385 37-72 (153)
78 KOG1114 Tripeptidyl peptidase 81.0 1 2.3E-05 52.8 2.6 24 98-121 77-100 (1304)
79 COG1470 Predicted membrane pro 78.6 30 0.00065 38.2 12.4 58 614-672 284-346 (513)
80 COG1470 Predicted membrane pro 77.8 20 0.00044 39.5 10.8 71 614-685 397-468 (513)
81 TIGR02745 ccoG_rdxA_fixG cytoc 75.4 10 0.00022 42.2 8.2 55 615-671 347-401 (434)
82 cd02121 PA_GCPII_like PA_GCPII 74.2 1.6 3.6E-05 43.7 1.5 32 354-385 67-103 (220)
83 PF07718 Coatamer_beta_C: Coat 70.8 42 0.0009 31.1 9.6 68 615-685 70-138 (140)
84 PF00635 Motile_Sperm: MSP (Ma 66.2 33 0.00073 29.7 8.0 53 615-671 19-71 (109)
85 cd04821 PA_M28_1_2 PA_M28_1_2: 63.4 8.7 0.00019 36.5 3.8 35 351-385 42-100 (157)
86 KOG4628 Predicted E3 ubiquitin 63.1 17 0.00037 38.9 6.3 73 344-416 62-151 (348)
87 PF07705 CARDB: CARDB; InterP 56.2 1.2E+02 0.0026 25.4 10.0 52 614-670 19-72 (101)
88 smart00635 BID_2 Bacterial Ig- 55.9 39 0.00084 27.9 6.1 40 644-688 4-43 (81)
89 TIGR01451 B_ant_repeat conserv 48.6 77 0.0017 24.0 6.2 38 614-654 12-50 (53)
90 PF00927 Transglut_C: Transglu 45.0 1.7E+02 0.0038 25.3 8.9 57 614-671 15-78 (107)
91 PF12690 BsuPI: Intracellular 41.9 1.2E+02 0.0027 25.3 7.0 20 651-671 53-72 (82)
92 PF02845 CUE: CUE domain; Int 39.3 30 0.00064 24.7 2.5 24 502-525 5-28 (42)
93 PRK15098 beta-D-glucoside gluc 37.2 83 0.0018 38.0 7.3 73 596-671 643-729 (765)
94 PF07610 DUF1573: Protein of u 35.0 1.4E+02 0.003 21.7 5.5 44 620-667 2-45 (45)
95 PLN03080 Probable beta-xylosid 33.4 86 0.0019 38.0 6.6 52 615-669 685-744 (779)
96 PF08260 Kinin: Insect kinin p 31.1 23 0.0005 16.1 0.5 6 438-443 3-8 (8)
97 PF05506 DUF756: Domain of unk 30.8 3.2E+02 0.0069 22.8 9.4 55 615-679 19-73 (89)
98 PF14016 DUF4232: Protein of u 29.4 4.3E+02 0.0093 23.9 10.3 79 614-695 18-112 (131)
99 PF05753 TRAP_beta: Translocon 27.8 3.8E+02 0.0083 26.0 8.9 67 614-683 38-109 (181)
100 PRK15019 CsdA-binding activato 27.8 57 0.0012 30.6 3.0 33 486-519 77-109 (147)
101 PF08821 CGGC: CGGC domain; I 27.0 3.7E+02 0.008 23.7 7.8 41 199-242 36-76 (107)
102 COG4856 Uncharacterized protei 26.7 1.9E+02 0.004 31.4 6.8 56 615-670 91-147 (403)
103 TIGR03391 FeS_syn_CsdE cystein 26.3 64 0.0014 29.9 3.0 34 486-520 72-105 (138)
104 PF13940 Ldr_toxin: Toxin Ldr, 26.2 52 0.0011 22.3 1.7 13 493-505 14-26 (35)
105 smart00546 CUE Domain that may 26.0 95 0.0021 22.1 3.3 25 501-525 5-29 (43)
106 PF04255 DUF433: Protein of un 25.5 58 0.0012 25.0 2.2 38 485-522 11-54 (56)
107 PF02601 Exonuc_VII_L: Exonucl 24.7 2E+02 0.0044 30.5 7.0 73 197-273 38-117 (319)
108 KOG3920 Uncharacterized conser 24.5 87 0.0019 29.4 3.4 74 342-416 72-165 (193)
109 PRK09296 cysteine desufuration 24.2 65 0.0014 29.9 2.7 33 486-519 67-99 (138)
110 TIGR00845 caca sodium/calcium 24.0 6.1E+02 0.013 31.3 11.2 63 602-670 407-475 (928)
111 COG2166 sufE Cysteine desulfur 22.9 75 0.0016 29.6 2.8 32 486-518 72-103 (144)
112 PRK15308 putative fimbrial pro 22.4 3.1E+02 0.0068 27.9 7.4 55 615-670 32-101 (234)
113 COG1570 XseA Exonuclease VII, 21.7 2E+02 0.0043 32.0 6.2 75 195-273 157-235 (440)
114 PRK13203 ureB urease subunit b 21.6 2.3E+02 0.005 24.7 5.2 50 615-666 19-82 (102)
115 PF02657 SufE: Fe-S metabolism 21.3 96 0.0021 28.2 3.1 33 487-520 59-91 (125)
116 PF04744 Monooxygenase_B: Mono 21.0 5.6E+02 0.012 27.8 9.1 52 614-669 263-335 (381)
117 cd00407 Urease_beta Urease bet 20.2 2.5E+02 0.0054 24.5 5.1 50 615-666 19-82 (101)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.5e-52 Score=439.50 Aligned_cols=286 Identities=52% Similarity=0.829 Sum_probs=245.7
Q ss_pred ccccccCCccccCCccccccC-----CCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccc---cCce
Q 036374 77 LQLQTTRSWDFMGFPETVKRE-----PTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFT---CNNK 148 (706)
Q Consensus 77 ~~~~~~~s~~~ig~~~~~~~~-----~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~---~n~k 148 (706)
+++++++++++++++ .+|+. +.+|+||+|||||||||++||+|.+.+..+++..|.+ .|..+..+. ||+|
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k 78 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPG-DCVTGEDFNPFSCNNK 78 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCC-cccCCCCcCccCcCCe
Confidence 468899999999999 77775 8999999999999999999999999888888899999 898887774 9999
Q ss_pred eEeeeecCC-------------CCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCC
Q 036374 149 IIGARYYSG-------------INTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPC 215 (706)
Q Consensus 149 ~ig~~~~~~-------------~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~ 215 (706)
+++.++|.. ..++.|. .||||||||||||+...+....|...+.+.||||+|+|+++|+++....+
T Consensus 79 i~g~~~~~~~~~~~~~~~~~~~~~~~~d~-~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~ 157 (307)
T cd04852 79 LIGARYFSDGYDAYGGFNSDGEYRSPRDY-DGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGC 157 (307)
T ss_pred EEEEEEcccchhhccCcccccCCCCCccC-CCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCc
Confidence 999999853 2445777 99999999999999876666666666777999999999999999932558
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccC
Q 036374 216 NEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSI 295 (706)
Q Consensus 216 ~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~ 295 (706)
..+++++||++|++++++|||||||.... ....+.+..++..+.++|+++|+||||+|+...+.++..||+++||+.+
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~- 235 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST- 235 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-
Confidence 89999999999999999999999999832 4456778888888999999999999999987777888899999998632
Q ss_pred CcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheee
Q 036374 296 DRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFR 375 (706)
Q Consensus 296 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~ 375 (706)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCc
Q 036374 376 VGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPD 455 (706)
Q Consensus 376 ~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPD 455 (706)
+|||
T Consensus 236 ----------------------------------------------------------------------------~~~d 239 (307)
T cd04852 236 ----------------------------------------------------------------------------LKPD 239 (307)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 3779
Q ss_pred eEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 456 ISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 456 i~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
|+|||.+|++++.... ..........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 240 i~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 240 IAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred eeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999986421 1111223467999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=2.3e-50 Score=445.36 Aligned_cols=292 Identities=20% Similarity=0.192 Sum_probs=213.3
Q ss_pred cCCcccccc--CCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccc--cCc----eeEeeeecCCCC
Q 036374 88 MGFPETVKR--EPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFT--CNN----KIIGARYYSGIN 159 (706)
Q Consensus 88 ig~~~~~~~--~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~--~n~----k~ig~~~~~~~~ 159 (706)
++++ ++|+ .+.+|+||+|||||||||++||||.+. +..-+....| .++. +++ .+.|..+.++..
T Consensus 301 i~~~-~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~n-i~~n~~el~G------rdgiDdD~nG~vdd~~G~nfVd~~~ 372 (639)
T PTZ00262 301 TRLD-ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDN-IDVNVKELHG------RKGIDDDNNGNVDDEYGANFVNNDG 372 (639)
T ss_pred hCch-HHHHHhhccCCCCcEEEEEccCCCCCChhhhhh-cccccccccC------ccccccccCCcccccccccccCCCC
Confidence 4555 6776 356899999999999999999999853 1110111111 1110 111 122222223356
Q ss_pred CcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcc
Q 036374 160 TTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGA 239 (706)
Q Consensus 160 ~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~Sl 239 (706)
+|.|. .||||||||||||...++. .+.||||+|+|+++|+++....+..+++++||+||++.|++||||||
T Consensus 373 ~P~D~-~GHGTHVAGIIAA~gnN~~--------Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSl 443 (639)
T PTZ00262 373 GPMDD-NYHGTHVSGIISAIGNNNI--------GIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSF 443 (639)
T ss_pred CCCCC-CCcchHHHHHHhccccCCC--------ceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEecc
Confidence 78888 9999999999999754322 23899999999999999833337889999999999999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------ccc----CCCceEEEccccCCcceee
Q 036374 240 TYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAS--------------TVV----VAPWILTVAGSSIDRPFID 301 (706)
Q Consensus 240 G~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------------~~~----~~p~vitVga~~~~~~~~~ 301 (706)
|+.. ....+..++.+|.++|+++|+||||+|..... ++. ..+++|+|||.+.+..
T Consensus 444 G~~~----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~--- 516 (639)
T PTZ00262 444 SFDE----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKN--- 516 (639)
T ss_pred ccCC----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCC---
Confidence 9762 23467788889999999999999999864211 111 2466777777643210
Q ss_pred eEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEE
Q 036374 302 KAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGS 381 (706)
Q Consensus 302 ~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~ 381 (706)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCC
Q 036374 382 IQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAV 461 (706)
Q Consensus 382 i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~ 461 (706)
....++.||++|. .++||+|||+
T Consensus 517 --------------------------------------------------~~~s~s~~Snyg~-------~~VDIaAPG~ 539 (639)
T PTZ00262 517 --------------------------------------------------NQYSLSPNSFYSA-------KYCQLAAPGT 539 (639)
T ss_pred --------------------------------------------------CcccccccccCCC-------CcceEEeCCC
Confidence 0012345566652 2349999999
Q ss_pred cEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCC
Q 036374 462 QILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYG 541 (706)
Q Consensus 462 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G 541 (706)
+|+++++. +.|..++|||||||||||+||||++++|+|++.||+++|++||.++.. .+..+|
T Consensus 540 dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~-----~~n~~~ 601 (639)
T PTZ00262 540 NIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPS-----LKNKVK 601 (639)
T ss_pred CeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCC-----CCCccc
Confidence 99999873 569999999999999999999999999999999999999999998754 223344
Q ss_pred C-CCCCccccCCcCcccc
Q 036374 542 S-GHIDPVKATNPGLVYE 558 (706)
Q Consensus 542 ~-G~id~~~Al~~~lv~~ 558 (706)
| |+||+.+|++..+.+.
T Consensus 602 wgG~LDa~kAV~~Ai~~~ 619 (639)
T PTZ00262 602 WGGYLDIHHAVNLAIASK 619 (639)
T ss_pred cCcEEcHHHHHHHHHhcc
Confidence 3 8999999999766543
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=4e-49 Score=409.73 Aligned_cols=271 Identities=25% Similarity=0.241 Sum_probs=205.7
Q ss_pred CCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecc
Q 036374 98 PTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAA 177 (706)
Q Consensus 98 ~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~a 177 (706)
+++|+||+|+|||||||.+||+|.+-..+..+..+.. .+ . .....|. .+|||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~~----------~~-------~---~~~~~d~-~gHGT~vAgii- 58 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVNV----------LG-------D---LDGGSGG-GDEGRAMLEII- 58 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcceee----------cc-------c---cCCCCCC-CchHHHHHHHH-
Confidence 5789999999999999999986543211111111100 00 0 1234566 89999999999
Q ss_pred cccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHH
Q 036374 178 GNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAF 257 (706)
Q Consensus 178 g~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~ 257 (706)
.||||+|+|+.+|+.. ..+++++||+||++.|++|||||||......+....+..++.
T Consensus 59 -----------------~GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~ 116 (275)
T cd05562 59 -----------------HDIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVD 116 (275)
T ss_pred -----------------hccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHH
Confidence 5899999999988754 478999999999999999999999986333334456788888
Q ss_pred HHHhC-CcEEEEecCCCCCCCC-CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCC
Q 036374 258 HAMEK-GILTAVPTGNMGPKPA-STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNA 335 (706)
Q Consensus 258 ~a~~~-Gv~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~ 335 (706)
++.++ |+++|+||||+|.... ..+...|++|+|||++.+.........+.
T Consensus 117 ~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~---------------------------- 168 (275)
T cd05562 117 EVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAP---------------------------- 168 (275)
T ss_pred HHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccccc----------------------------
Confidence 88887 9999999999998543 34568899999999875531100000000
Q ss_pred CCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcC
Q 036374 336 SYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINST 415 (706)
Q Consensus 336 ~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~ 415 (706)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCC-cEEecccCCCCCCCCCCCCcccceeEeccccch
Q 036374 416 EKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAV-QILAAYTGGWGPSNHPMDHRFVKYNILSGTSIA 494 (706)
Q Consensus 416 ~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 494 (706)
.......+.||++||+. ++++||||+|||. ++.+.+. .+.|..++|||||
T Consensus 169 --------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~-------------~~~~~~~sGTS~A 219 (275)
T cd05562 169 --------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGD-------------GDGPPNFFGTSAA 219 (275)
T ss_pred --------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCc-------------CCceeecccchHH
Confidence 00012356688899987 8899999999975 3444433 3568999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 495 SAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 495 aP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
||||||++|||+|++|+|+++|||++|++||+++.. +..+..||||+||+.+||+
T Consensus 220 aP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~---~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 220 APHAAGVAALVLSANPGLTPADIRDALRSTALDMGE---PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC---CCCCCCcCcCcccHHHHhh
Confidence 999999999999999999999999999999998764 4567899999999999986
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=9.3e-49 Score=403.97 Aligned_cols=244 Identities=26% Similarity=0.310 Sum_probs=198.5
Q ss_pred ccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCccccee
Q 036374 95 KREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMAS 174 (706)
Q Consensus 95 ~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAg 174 (706)
|+.+++|+||+|||||||||.+||+|.+. ....+| .......|. .||||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~--------------~~~~~~------------~~~~~~~d~-~gHGT~VAG 53 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV--------------KERTNW------------TNEKTLDDG-LGHGTFVAG 53 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc--------------cccccc------------CCCCCCCCC-CCcHHHHHH
Confidence 88999999999999999999999999631 001111 111234566 899999999
Q ss_pred ecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHH
Q 036374 175 IAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVA 253 (706)
Q Consensus 175 i~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~ 253 (706)
||+|+.. .+.||||+|+|+.+|++. ..+ +..+.+++++++|++.+++|||||||... +...++.
T Consensus 54 iIa~~~~-----------~~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~~~~~~ 118 (255)
T cd07479 54 VIASSRE-----------QCLGFAPDAEIYIFRVFT-NNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FMDKPFV 118 (255)
T ss_pred HHHccCC-----------CceeECCCCEEEEEEeec-CCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CCCcHHH
Confidence 9998731 138999999999999998 444 66788999999999999999999999862 2345666
Q ss_pred HHHHHHHhCCcEEEEecCCCCCCCCC--cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEec
Q 036374 254 IGAFHAMEKGILTAVPTGNMGPKPAS--TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYG 331 (706)
Q Consensus 254 ~a~~~a~~~Gv~vV~AAGN~G~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~ 331 (706)
.++.++.++|++||+||||+|+...+ .+...+++|+|||.+.+
T Consensus 119 ~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~----------------------------------- 163 (255)
T cd07479 119 DKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD----------------------------------- 163 (255)
T ss_pred HHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC-----------------------------------
Confidence 77778889999999999999975443 34567889999986532
Q ss_pred cCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHH
Q 036374 332 KTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLY 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~ 411 (706)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCC----CCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeE
Q 036374 412 INSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKI----TPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNI 487 (706)
Q Consensus 412 ~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~----~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 487 (706)
+.++.|||+|++.+ .++++||||+|||.+|+++.. .+.|..
T Consensus 164 ----------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~-------------~~~~~~ 208 (255)
T cd07479 164 ----------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKL-------------KGGCRA 208 (255)
T ss_pred ----------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeecccc-------------CCCeEE
Confidence 45788999996521 267889999999999998765 245889
Q ss_pred eccccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccCC
Q 036374 488 LSGTSIASAFAAGAAAYVRSFHP----DWSPSSIKSALMTTALLMNG 530 (706)
Q Consensus 488 ~sGTSmAaP~VAG~aALl~~~~P----~lsp~~ik~~L~~TA~~~~~ 530 (706)
++|||||||||||++|||+|++| .++|.+||++|++||+++++
T Consensus 209 ~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~~ 255 (255)
T cd07479 209 LSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLPG 255 (255)
T ss_pred eccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999 79999999999999998753
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-48 Score=408.80 Aligned_cols=286 Identities=22% Similarity=0.189 Sum_probs=189.9
Q ss_pred CCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCC--CCCcccccCCCcccceeeccc
Q 036374 101 ESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSG--INTTREYQLGHGTHMASIAAG 178 (706)
Q Consensus 101 G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~--~~~~~D~~~gHGThVAgi~ag 178 (706)
|+||+|+|||||||.+||||.+.... .|.- .|.....++...++.+ ...+.|. +||||||||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~-------~~d~~~~~~~g~d~~~~~~~~~~D~-~gHGThvAGiiag 68 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL-------KFDYKAYLLPGMDKWGGFYVIMYDF-FSHGTSCASVAAG 68 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc-------ccCcCCCccCCcCCCCCccCCCCCc-cccchhHHHHHhc
Confidence 89999999999999999999643110 0000 0101111111111111 1346788 9999999999999
Q ss_pred ccccCCCcccC-CCcceeeccCCCeEEEEEeecCCCCCCHHHHHH-------HHHHH--HHCCCcEEEEcccCCCCCC--
Q 036374 179 NLVVGASFDGL-AKGNVRGAVPSARIAAYRVCHYPWPCNEADILA-------AFDDA--IADGVDIILTGATYGFAFD-- 246 (706)
Q Consensus 179 ~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~-------ai~~a--i~~gv~VIN~SlG~~~~~~-- 246 (706)
......+.+++ ....+.||||+|+|+++|++.+.+.+....+.. +++|+ .+++++|||||||......
T Consensus 69 ~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~ 148 (311)
T cd07497 69 RGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTG 148 (311)
T ss_pred cCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccc
Confidence 86432222211 122359999999999999997222233333333 33443 3689999999999862211
Q ss_pred --ChhhHHHHHHHHH-HhCCcEEEEecCCCCCCCCC--cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCC
Q 036374 247 --FAEDAVAIGAFHA-MEKGILTAVPTGNMGPKPAS--TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTM 321 (706)
Q Consensus 247 --~~~~~~~~a~~~a-~~~Gv~vV~AAGN~G~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 321 (706)
...+.....++.+ .++|+++|+||||+|+...+ .+..++++|+|||++.....+...
T Consensus 149 ~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~------------------ 210 (311)
T cd07497 149 YAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL------------------ 210 (311)
T ss_pred cccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh------------------
Confidence 1122333333332 37999999999999986444 345789999999987442110000
Q ss_pred CCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEec
Q 036374 322 KGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILK 401 (706)
Q Consensus 322 ~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~ 401 (706)
+..
T Consensus 211 ------~~~----------------------------------------------------------------------- 213 (311)
T cd07497 211 ------FGY----------------------------------------------------------------------- 213 (311)
T ss_pred ------hcc-----------------------------------------------------------------------
Confidence 000
Q ss_pred hhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCc
Q 036374 402 MEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHR 481 (706)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~ 481 (706)
.....+.++.||||||+. ++++||||+|||++|+++.+...... ....
T Consensus 214 ---------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~---~~~~ 261 (311)
T cd07497 214 ---------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG---ALDG 261 (311)
T ss_pred ---------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc---ccCC
Confidence 001235689999999998 89999999999999999876432100 0111
Q ss_pred ccceeEeccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 036374 482 FVKYNILSGTSIASAFAAGAAAYVRSFHP------DWSPSSIKSALMTTA 525 (706)
Q Consensus 482 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~lsp~~ik~~L~~TA 525 (706)
...|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 262 ~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 262 NEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 34699999999999999999999999886 689999999999997
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=9.6e-48 Score=415.76 Aligned_cols=307 Identities=27% Similarity=0.295 Sum_probs=232.2
Q ss_pred ccccCCC-CCCCcEEEEEccccCCCCcCCCCCCCCCCCC-----CCCCCcccCCcccccCceeEeeeecC-CCCCc---c
Q 036374 93 TVKREPT-VESDMIIGVLDNGIWPESDMFDDKSFGPPPK-----KWKGGACKGGQNFTCNNKIIGARYYS-GINTT---R 162 (706)
Q Consensus 93 ~~~~~~~-~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~~g~~f~~n~k~ig~~~~~-~~~~~---~ 162 (706)
++|+++. +|+||+|||||||||++||+|.+....+... .+.. .+..+.....+++++..++|. +..++ .
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKK-KAGIGYGKYYNEKVPFAYNYADNNDDILDED 79 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhh-cccCCCCcccccCCCeeEcCCCCCCccCCCC
Confidence 3798887 9999999999999999999998654332110 1122 233344445677777776664 22223 3
Q ss_pred cccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecC--CCCCCHHHHHHHHHHHHHCCCcEEEEccc
Q 036374 163 EYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHY--PWPCNEADILAAFDDAIADGVDIILTGAT 240 (706)
Q Consensus 163 D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~~~i~~ai~~ai~~gv~VIN~SlG 240 (706)
|. .+|||||||||+|...+.. ....+.||||+|+|+.+|++.. ...+....++++++++++.|++|||||||
T Consensus 80 ~~-~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G 153 (346)
T cd07475 80 DG-SSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLG 153 (346)
T ss_pred CC-CCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 55 8999999999999864321 1233499999999999999972 23477888999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCc----------------ccCCCceEEEccccCCcceeeeEE
Q 036374 241 YGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAST----------------VVVAPWILTVAGSSIDRPFIDKAI 304 (706)
Q Consensus 241 ~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~----------------~~~~p~vitVga~~~~~~~~~~~~ 304 (706)
...........+..++.++.++|+++|+||||+|...... +...+++|+||+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~~------- 226 (346)
T cd07475 154 STAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKV------- 226 (346)
T ss_pred cCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccccc-------
Confidence 9744334556778888889999999999999998654221 12345566666544110
Q ss_pred eCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEec
Q 036374 305 LGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQP 384 (706)
Q Consensus 305 ~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~ 384 (706)
T Consensus 227 -------------------------------------------------------------------------------- 226 (346)
T cd07475 227 -------------------------------------------------------------------------------- 226 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEE
Q 036374 385 ASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQIL 464 (706)
Q Consensus 385 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~ 464 (706)
.....+.++.||+|||+. ..++||||+|||.+|+
T Consensus 227 --------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~ 260 (346)
T cd07475 227 --------------------------------------------PNPNGGQMSGFSSWGPTP--DLDLKPDITAPGGNIY 260 (346)
T ss_pred --------------------------------------------CCCCCCccCCCcCCCCCc--ccCcCCeEEeCCCCeE
Confidence 002235688999999998 8999999999999999
Q ss_pred ecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhcccccCCC---CC
Q 036374 465 AAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSF----HPDWSPSS----IKSALMTTALLMNGT---VN 533 (706)
Q Consensus 465 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~lsp~~----ik~~L~~TA~~~~~~---~~ 533 (706)
++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+.... ..
T Consensus 261 s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~~~~ 327 (346)
T cd07475 261 STVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDTKT 327 (346)
T ss_pred EecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccCCCCc
Confidence 88763 56889999999999999999999997 79999876 788999999964332 12
Q ss_pred CCCCCCCCCCCCCccccCC
Q 036374 534 RGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 534 ~~~~~~~G~G~id~~~Al~ 552 (706)
...+..+|+|+||+.+||+
T Consensus 328 ~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 328 YYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred cCCccccCcchhcHHHhhC
Confidence 3467788999999999985
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=6.7e-47 Score=418.45 Aligned_cols=400 Identities=22% Similarity=0.215 Sum_probs=243.6
Q ss_pred CCCCCcEEEEEccccCCCCcCCCC-CCCCCCCCCCCCCcccCCcccccCceeEeeeecC--------------CCCCccc
Q 036374 99 TVESDMIIGVLDNGIWPESDMFDD-KSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYS--------------GINTTRE 163 (706)
Q Consensus 99 ~~G~GVvVgVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~--------------~~~~~~D 163 (706)
.+|+||+|||||||||+.||+|++ ++.+++...|+. ....+..- ....+...+. ......|
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq-~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D 76 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQ-TIPGGPPP---GGYYGGGEYTEEIINAALASDNPYDIVPSRD 76 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhC-cCCCCCCC---ccccCceEEeHHHHHHHHhcCCccccCcCCC
Confidence 479999999999999999999985 456777788876 44332110 0111111110 0122357
Q ss_pred ccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-----------CCHHHHHHHHHHHHHC--
Q 036374 164 YQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-----------CNEADILAAFDDAIAD-- 230 (706)
Q Consensus 164 ~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-----------~~~~~i~~ai~~ai~~-- 230 (706)
. .||||||||||||+..++ ..+.||||+|+|+++|++. ..+ +...++++||+|+++.
T Consensus 77 ~-~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~-~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~ 146 (455)
T cd07478 77 E-NGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQ-AKKYLREFYEDVPFYQETDIMLAIKYLYDKAL 146 (455)
T ss_pred C-CCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeec-CCCcccccccccccCcHHHHHHHHHHHHHHHH
Confidence 7 999999999999986432 2339999999999999998 433 5788999999999873
Q ss_pred ---CCcEEEEcccCCCCCCChhhHHHHHHHHHHhC-CcEEEEecCCCCCCCCCcccC-----C--CceEEEccccCCcce
Q 036374 231 ---GVDIILTGATYGFAFDFAEDAVAIGAFHAMEK-GILTAVPTGNMGPKPASTVVV-----A--PWILTVAGSSIDRPF 299 (706)
Q Consensus 231 ---gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~~~~~~-----~--p~vitVga~~~~~~~ 299 (706)
.+.|||||||.+.+.+...++++.++..+.++ |++||+||||+|......... . .--+.|+.......+
T Consensus 147 ~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~~~~~ 226 (455)
T cd07478 147 ELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEKGFNL 226 (455)
T ss_pred HhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCcceEE
Confidence 46899999999877788888999998887776 999999999999743322210 0 001233321111000
Q ss_pred eeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCC--CCCcccccccCCCCCCCCcccccEEEEeecccchheeecC
Q 036374 300 IDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASY--PCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVG 377 (706)
Q Consensus 300 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~--~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~G 377 (706)
.......+...+.-.+ +.++..+.+........ ......-..|.... .+...+|.-.+..+ .. -...|
T Consensus 227 eiW~~~~d~~~v~i~s-----P~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~-~~~~~~g~~~i~i~---~~-~~~~G 296 (455)
T cd07478 227 EIWGDFPDRFSVSIIS-----PSGESSGRINPGIGGSESYKFVFEGTTVYVYYY-LPEPYTGDQLIFIR---FK-NIKPG 296 (455)
T ss_pred EEecCCCCEEEEEEEC-----CCCCccCccCcCCCcceeEEEEECCeEEEEEEc-CCCCCCCCeEEEEE---cc-CCCcc
Confidence 0000000100000000 00000000000000000 00000000111100 01111222222211 11 22345
Q ss_pred ceEEEecCC--CCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeee--e--eec--CCCCCcccccCCCCCCCCCC
Q 036374 378 ALGSIQPAS--TIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRS--M--AIK--DDAAPVVHPFSGRGPSKITP 449 (706)
Q Consensus 378 a~g~i~~~~--~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~--~--~~~--~~~~~~~a~fSS~GP~~~~~ 449 (706)
.+-+.++.. ..-....++|...+..++. .++.+....+++++.. . .++ +...+.++.||||||+. +
T Consensus 297 iW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~--~ 370 (455)
T cd07478 297 IWKIRLTGVSITDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR--D 370 (455)
T ss_pred ceEEEEEeccCCCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--C
Confidence 566666551 1223345566544433322 3455566666666221 1 111 23345799999999998 8
Q ss_pred CCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhC------CCCCHHHHHHHHHh
Q 036374 450 DIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFH------PDWSPSSIKSALMT 523 (706)
Q Consensus 450 ~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~lsp~~ik~~L~~ 523 (706)
+++||||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.|++++||++|++
T Consensus 371 ~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~ 437 (455)
T cd07478 371 GRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIR 437 (455)
T ss_pred CCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHH
Confidence 99999999999999999883 569999999999999999999999875 56799999999999
Q ss_pred cccccCCCCCCCCCCCCCCC
Q 036374 524 TALLMNGTVNRGREFDYGSG 543 (706)
Q Consensus 524 TA~~~~~~~~~~~~~~~G~G 543 (706)
||+++... +.++.+||||
T Consensus 438 tA~~~~~~--~~pn~~~GyG 455 (455)
T cd07478 438 GARRRPGD--EYPNPEWGYG 455 (455)
T ss_pred hCccCCCC--CCCCCCCCCC
Confidence 99998742 3457889988
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8e-47 Score=402.40 Aligned_cols=291 Identities=28% Similarity=0.372 Sum_probs=226.3
Q ss_pred CCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCC
Q 036374 89 GFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGH 168 (706)
Q Consensus 89 g~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gH 168 (706)
|++ .+|+.+++|+||+|||||+|||++||+|.+.-.. +.....+++|..+. ...........++.|. .||
T Consensus 1 ~v~-~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~-------~~~~~~~~d~~~~~-~~~~~~~~~~~~~~d~-~gH 70 (312)
T cd07489 1 GVD-KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP-------GCKVAGGYDFVGDD-YDGTNPPVPDDDPMDC-QGH 70 (312)
T ss_pred Chh-hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC-------CceeccccccCCcc-cccccCCCCCCCCCCC-CCc
Confidence 456 7999999999999999999999999999753111 10111222321111 0000001113456788 999
Q ss_pred cccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCh
Q 036374 169 GTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFA 248 (706)
Q Consensus 169 GThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~ 248 (706)
||||||||+|...+ .| +.||||+|+|+.+|++.+......+.+++++++|++++++|||||||... .+.
T Consensus 71 GT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~--~~~ 139 (312)
T cd07489 71 GTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS--GWS 139 (312)
T ss_pred HHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC--CCC
Confidence 99999999998642 12 38999999999999998334477888999999999999999999999873 344
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCce
Q 036374 249 EDAVAIGAFHAMEKGILTAVPTGNMGPKPA---STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNK 325 (706)
Q Consensus 249 ~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (706)
...+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 140 ~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------------------- 188 (312)
T cd07489 140 EDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------------------- 188 (312)
T ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------------------------
Confidence 477778888899999999999999986532 2344667888887643
Q ss_pred eeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhH
Q 036374 326 FPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDF 405 (706)
Q Consensus 326 ~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~ 405 (706)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccce
Q 036374 406 ERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKY 485 (706)
Q Consensus 406 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y 485 (706)
+.||++||+. +...||||+|||++|+++++.. .+.|
T Consensus 189 -------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~-----------~~~~ 224 (312)
T cd07489 189 -------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA-----------GGGY 224 (312)
T ss_pred -------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC-----------CCce
Confidence 3578999998 7899999999999999988753 2358
Q ss_pred eEeccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHhcccccCCCCC------CCCCCCCCCCCCCccccCCcCc
Q 036374 486 NILSGTSIASAFAAGAAAYVRSFH-PDWSPSSIKSALMTTALLMNGTVN------RGREFDYGSGHIDPVKATNPGL 555 (706)
Q Consensus 486 ~~~sGTSmAaP~VAG~aALl~~~~-P~lsp~~ik~~L~~TA~~~~~~~~------~~~~~~~G~G~id~~~Al~~~l 555 (706)
..++|||||||+|||++|||++++ |.+++.+||++|++||.++..... ..+...+|||+||+++|++..-
T Consensus 225 ~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 225 AVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred EeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHHHHhcCCc
Confidence 999999999999999999999999 999999999999999998754321 1345789999999999999633
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.9e-46 Score=388.62 Aligned_cols=247 Identities=24% Similarity=0.236 Sum_probs=202.6
Q ss_pred cccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccce
Q 036374 94 VKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMA 173 (706)
Q Consensus 94 ~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVA 173 (706)
+|..+++|+||+|||||+|||.+||+|.+..+.+....|. ...+..|. .+||||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~~-----------------------~~~~~~~~-~gHGT~VA 57 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYAA-----------------------AACQDGGA-SAHGTHVA 57 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCccc-----------------------cCCCCCCC-CCcHHHHH
Confidence 7999999999999999999999999997542221100000 01234566 89999999
Q ss_pred eecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhH
Q 036374 174 SIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDA 251 (706)
Q Consensus 174 gi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~ 251 (706)
|||+|+... .+.||||+|+|+.+|++. ..+ ++..++++||++|++.|++|||||||...........
T Consensus 58 gii~g~~~~----------~~~GvAp~a~i~~~~v~~-~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~ 126 (267)
T cd07476 58 SLIFGQPCS----------SVEGIAPLCRGLNIPIFA-EDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPI 126 (267)
T ss_pred HHHhcCCCC----------CceeECcCCeEEEEEEEe-CCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHH
Confidence 999987421 238999999999999987 432 4578899999999999999999999986433344566
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEec
Q 036374 252 VAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYG 331 (706)
Q Consensus 252 ~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~ 331 (706)
+..++.++.++|+++|+||||+|.....++...+++|+||+++.+
T Consensus 127 l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------------------------- 171 (267)
T cd07476 127 LANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD----------------------------------- 171 (267)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-----------------------------------
Confidence 788888899999999999999998776777788999999987532
Q ss_pred cCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHH
Q 036374 332 KTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLY 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~ 411 (706)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccc
Q 036374 412 INSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGT 491 (706)
Q Consensus 412 ~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 491 (706)
+.++.||++|+.. .||||+|||.+|+++.+. +.|..++||
T Consensus 172 ----------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~-------------~~~~~~sGT 211 (267)
T cd07476 172 ----------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG-------------GEVVRRSGT 211 (267)
T ss_pred ----------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-------------CCeEEeccH
Confidence 2356789999764 388999999999998773 569999999
Q ss_pred cchhHHHHHHHHHHHhhCCC----CCHHHHHHHHHhcccccCC
Q 036374 492 SIASAFAAGAAAYVRSFHPD----WSPSSIKSALMTTALLMNG 530 (706)
Q Consensus 492 SmAaP~VAG~aALl~~~~P~----lsp~~ik~~L~~TA~~~~~ 530 (706)
|||||||||++|||++++|. ++|++||++|++||+++..
T Consensus 212 S~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 212 SFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 99999999999999999887 9999999999999999865
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-45 Score=387.45 Aligned_cols=287 Identities=33% Similarity=0.460 Sum_probs=213.4
Q ss_pred CCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecC----CCCCcccccCCCcccceeec
Q 036374 101 ESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYS----GINTTREYQLGHGTHMASIA 176 (706)
Q Consensus 101 G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~----~~~~~~D~~~gHGThVAgi~ 176 (706)
|+||+|||||+|||++||+|.+.... .. .+..+++|..+..-....... ......|. .+|||||||+|
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~HGT~vAgii 72 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFP------ND-KVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDA-TGHGTHVAGII 72 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCC------CC-ceeeeeECccCCCCcccccccccccccCCCCCC-CCcHHHHHHHH
Confidence 89999999999999999999743211 00 222233331111000000000 01123346 89999999999
Q ss_pred ccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHH
Q 036374 177 AGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGA 256 (706)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~ 256 (706)
+|...+ ...+.|+||+|+|+.+|++.....+...+++++|+++++.+++|||||||.... ...+.+..++
T Consensus 73 ag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~--~~~~~~~~~~ 142 (295)
T cd07474 73 AGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVN--GPDDPDAIAI 142 (295)
T ss_pred hcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCHHHHHH
Confidence 988543 223389999999999999973334788899999999999999999999998732 2456778888
Q ss_pred HHHHhCCcEEEEecCCCCCCCCCc--ccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCC
Q 036374 257 FHAMEKGILTAVPTGNMGPKPAST--VVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTN 334 (706)
Q Consensus 257 ~~a~~~Gv~vV~AAGN~G~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~ 334 (706)
.++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 143 ~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------------------------ 186 (295)
T cd07474 143 NNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------------------------ 186 (295)
T ss_pred HHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------------------------
Confidence 899999999999999998765443 457789999998752110
Q ss_pred CCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhc
Q 036374 335 ASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINS 414 (706)
Q Consensus 335 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~ 414 (706)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEeeeeeecCCCCCcccccC-CCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccc
Q 036374 415 TEKPQVHILRSMAIKDDAAPVVHPFS-GRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSI 493 (706)
Q Consensus 415 ~~~~~~~i~~~~~~~~~~~~~~a~fS-S~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 493 (706)
........|+ +.|++. ...+||||+|||.+|++++... ...|..++||||
T Consensus 187 ----------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~-----------~~~~~~~~GTS~ 237 (295)
T cd07474 187 ----------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS-----------GTGYARMSGTSM 237 (295)
T ss_pred ----------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC-----------CCceEEeccHHH
Confidence 0012233444 455555 7899999999999999988743 256899999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCC-CCCCCCCCCCCCcccc
Q 036374 494 ASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNR-GREFDYGSGHIDPVKA 550 (706)
Q Consensus 494 AaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~-~~~~~~G~G~id~~~A 550 (706)
|||+|||++|||+|++|+|++++||++|++||+++...... .....+|+|+||+.+|
T Consensus 238 AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 238 AAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 99999999999999999999999999999999987664322 2457899999999987
No 11
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=5e-45 Score=391.53 Aligned_cols=220 Identities=21% Similarity=0.248 Sum_probs=166.4
Q ss_pred cccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHCCCcEEEEccc
Q 036374 163 EYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEADILAAFDDAIADGVDIILTGAT 240 (706)
Q Consensus 163 D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~ai~~gv~VIN~SlG 240 (706)
|. .+|||||||||||+..++ ..+.|+||+|+|+.+|+++...+ +...++++|+++|++.|++|||||||
T Consensus 183 d~-~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 183 DS-GAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CC-CCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 44 799999999999985322 22489999999999999873223 34467999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHH-HHhCCcEEEEecCCCCCCCCCccc---CCCceEEEccccCCcceeeeEEeCCCeEEeeeec
Q 036374 241 YGFAFDFAEDAVAIGAFH-AMEKGILTAVPTGNMGPKPASTVV---VAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAV 316 (706)
Q Consensus 241 ~~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~ 316 (706)
.....+.. ..+..++.+ +.++|+++|+||||+|+...++.. ..+++|+|||............+
T Consensus 254 ~~~~~~~~-~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~----------- 321 (412)
T cd04857 254 EATHWPNS-GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL----------- 321 (412)
T ss_pred cCCCCccc-hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc-----------
Confidence 87322211 233334443 446899999999999987665532 46899999997543211000000
Q ss_pred cCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCcc
Q 036374 317 NPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFP 396 (706)
Q Consensus 317 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p 396 (706)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCC
Q 036374 397 TVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNH 476 (706)
Q Consensus 397 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~ 476 (706)
.....+.++.||||||+. ++.+||||+|||+.|.+.-...
T Consensus 322 --------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~------ 361 (412)
T cd04857 322 --------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT------ 361 (412)
T ss_pred --------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC------
Confidence 001235689999999998 9999999999999998752211
Q ss_pred CCCCcccceeEeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 036374 477 PMDHRFVKYNILSGTSIASAFAAGAAAYVRS----FHPDWSPSSIKSALMTTALLM 528 (706)
Q Consensus 477 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~lsp~~ik~~L~~TA~~~ 528 (706)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 -----~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 -----LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -----CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 24689999999999999999999975 579999999999999999874
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-45 Score=374.95 Aligned_cols=235 Identities=23% Similarity=0.284 Sum_probs=192.4
Q ss_pred cEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccC
Q 036374 104 MIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVG 183 (706)
Q Consensus 104 VvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~ 183 (706)
|+|||||||||.+||+|.+.-+. ... +. ...+.|. .+|||||||||+|....
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~-------------~~~------------~~-~~~~~~~-~~HGT~vAgiia~~~~~- 52 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA-------------RLF------------FA-GPGAPAP-SAHGTAVASLLAGAGAQ- 52 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc-------------ccc------------CC-CCCCCCC-CCCHHHHHHHHhCCCCC-
Confidence 78999999999999999643111 111 10 1134456 89999999999987421
Q ss_pred CCcccCCCcceeeccCCCeEEEEEeecCC---CCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHH
Q 036374 184 ASFDGLAKGNVRGAVPSARIAAYRVCHYP---WPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAM 260 (706)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~---~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~ 260 (706)
. .|+||+|+|+.+|++... ..++..++++||+||++.|++|||||||.. ....+..++.++.
T Consensus 53 ---------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~-----~~~~l~~ai~~a~ 117 (239)
T cd05561 53 ---------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP-----PNALLAAAVAAAA 117 (239)
T ss_pred ---------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC-----CCHHHHHHHHHHH
Confidence 1 799999999999999832 126788999999999999999999999976 1346777888899
Q ss_pred hCCcEEEEecCCCCCCC-CCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCC
Q 036374 261 EKGILTAVPTGNMGPKP-ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPC 339 (706)
Q Consensus 261 ~~Gv~vV~AAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~ 339 (706)
++|+++|+||||+|... ..++...+++|+||+++.+
T Consensus 118 ~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------------------------- 154 (239)
T cd05561 118 ARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------------------------- 154 (239)
T ss_pred HCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-------------------------------------------
Confidence 99999999999998753 3456677899999986532
Q ss_pred CcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcE
Q 036374 340 SELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQ 419 (706)
Q Consensus 340 ~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~ 419 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHH
Q 036374 420 VHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAA 499 (706)
Q Consensus 420 ~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 499 (706)
+.++.||++|+.. ||.|||.+|+++.+ .+.|..++||||||||||
T Consensus 155 --------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~-------------~~~~~~~sGTS~AaP~va 199 (239)
T cd05561 155 --------------GRLYREANRGAHV--------DFAAPGVDVWVAAP-------------GGGYRYVSGTSFAAPFVT 199 (239)
T ss_pred --------------CCccccCCCCCcc--------eEEccccceecccC-------------CCCEEEeCCHHHHHHHHH
Confidence 3467899999976 99999999998765 356999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCC
Q 036374 500 GAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSG 543 (706)
Q Consensus 500 G~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G 543 (706)
|++|||+|++| ++++|||++|++||+++.. +..+..||||
T Consensus 200 G~aAll~~~~p-~~~~~i~~~L~~ta~~~g~---~~~d~~~G~G 239 (239)
T cd05561 200 AALALLLQASP-LAPDDARARLAATAKDLGP---PGRDPVFGYG 239 (239)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHhhccCC---CCcCCCcCCC
Confidence 99999999999 9999999999999998765 5677899998
No 13
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=2.8e-45 Score=385.63 Aligned_cols=258 Identities=26% Similarity=0.338 Sum_probs=189.5
Q ss_pred CCcEEEEEccccCCCCcCCCCCCC---CCCC-----CCCCCCcc--cCCcccc---cCceeEeeeecCC---------CC
Q 036374 102 SDMIIGVLDNGIWPESDMFDDKSF---GPPP-----KKWKGGAC--KGGQNFT---CNNKIIGARYYSG---------IN 159 (706)
Q Consensus 102 ~GVvVgVIDtGid~~Hp~f~~~~~---~~~~-----~~~~g~~~--~~g~~f~---~n~k~ig~~~~~~---------~~ 159 (706)
|+|+|||||||||++||+|++.-. .+++ ...+| .+ ..|++|. ..+++++...+.. ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng-~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 79 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNG-YIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVN 79 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCC-ccccccCeeccCCcccccccccCccccccccccccccC
Confidence 689999999999999999985311 1111 01122 11 2345552 1223333222210 12
Q ss_pred CcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcc
Q 036374 160 TTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGA 239 (706)
Q Consensus 160 ~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~Sl 239 (706)
.|.|. .+|||||||||+|...++. | +.||||+|+|+.+|++. .......++++||+||++.|++||||||
T Consensus 80 ~~~~~-~gHGT~VAGiIaa~~~n~~---g-----~~GvAp~a~i~~~k~~~-~g~~~~~~i~~Ai~~a~~~g~~IiN~S~ 149 (291)
T cd07483 80 GPISD-ADHGTHVAGIIAAVRDNGI---G-----IDGVADNVKIMPLRIVP-NGDERDKDIANAIRYAVDNGAKVINMSF 149 (291)
T ss_pred CCCCC-CCcHHHHHHHHhCcCCCCC---c-----eEEECCCCEEEEEEEec-CCCcCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 34456 8999999999999854322 2 38999999999999987 5556788999999999999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-----------ccCCCceEEEccccCCcceeeeEEeCCC
Q 036374 240 TYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAST-----------VVVAPWILTVAGSSIDRPFIDKAILGDG 308 (706)
Q Consensus 240 G~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~-----------~~~~p~vitVga~~~~~~~~~~~~~~~~ 308 (706)
|.... .....+..++..+.++|+++|+||||+|...... +...+++|+||+.+...
T Consensus 150 G~~~~--~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~----------- 216 (291)
T cd07483 150 GKSFS--PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY----------- 216 (291)
T ss_pred CCCCC--CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC-----------
Confidence 97622 2234567777888999999999999998643211 11235677777654321
Q ss_pred eEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCC
Q 036374 309 TTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTI 388 (706)
Q Consensus 309 ~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~ 388 (706)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEeccc
Q 036374 389 MSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYT 468 (706)
Q Consensus 389 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~ 468 (706)
....++.||++|+. +|||.|||.+|+++.+
T Consensus 217 -------------------------------------------~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~ 246 (291)
T cd07483 217 -------------------------------------------ENNLVANFSNYGKK-------NVDVFAPGERIYSTTP 246 (291)
T ss_pred -------------------------------------------CcccccccCCCCCC-------ceEEEeCCCCeEeccC
Confidence 11247889999974 3599999999999876
Q ss_pred CCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 469 GGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 469 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
.+.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 247 -------------~~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 247 -------------DNEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred -------------cCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 356999999999999999999999999999999999999999984
No 14
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.1e-44 Score=371.94 Aligned_cols=242 Identities=27% Similarity=0.300 Sum_probs=192.2
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecC-CCCCc-ccccCCCcccceeeccccc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYS-GINTT-REYQLGHGTHMASIAAGNL 180 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~-~~~~~-~D~~~gHGThVAgi~ag~~ 180 (706)
||+|||||||||++||+|..... ..+.++.+.++|. ...++ .|. .+|||||||||+|+.
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~------------------~~~~~i~~~~~~~~~~~~~~~~~-~~HGT~vagiia~~~ 61 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL------------------FKNLRILGEYDFVDNSNNTNYTD-DDHGTAVLSTMAGYT 61 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc------------------ccCCceeeeecCccCCCCCCCCC-CCchhhhheeeeeCC
Confidence 79999999999999999952110 0122344444442 12233 566 899999999999974
Q ss_pred ccCCCcccCCCcceeeccCCCeEEEEEeecCCCC---CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCC----------
Q 036374 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP---CNEADILAAFDDAIADGVDIILTGATYGFAFDF---------- 247 (706)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~---------- 247 (706)
. +.+.||||+|+|+.+|+.. ... .....+++++++|.+.|++|||||||.......
T Consensus 62 ~----------~~~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~ 130 (261)
T cd07493 62 P----------GVMVGTAPNASYYLARTED-VASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMD 130 (261)
T ss_pred C----------CCEEEeCCCCEEEEEEecc-cCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccccccc
Confidence 2 2348999999999999876 322 345678999999999999999999998632111
Q ss_pred -hhhHHHHHHHHHHhCCcEEEEecCCCCCCC---CCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCC
Q 036374 248 -AEDAVAIGAFHAMEKGILTAVPTGNMGPKP---ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKG 323 (706)
Q Consensus 248 -~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~---~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 323 (706)
....+..++..+.++|+++|+||||+|... ...+...+++|+|||.+.+
T Consensus 131 ~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 183 (261)
T cd07493 131 GKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN--------------------------- 183 (261)
T ss_pred ccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC---------------------------
Confidence 123567788888999999999999999763 4456678999999986532
Q ss_pred ceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechh
Q 036374 324 NKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKME 403 (706)
Q Consensus 324 ~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~ 403 (706)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCccc
Q 036374 404 DFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFV 483 (706)
Q Consensus 404 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~ 483 (706)
+.++.||++||+. ++++||||+|||.+|++... .+
T Consensus 184 ------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~-------------~~ 218 (261)
T cd07493 184 ------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVING-------------DG 218 (261)
T ss_pred ------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcC-------------CC
Confidence 3467899999998 89999999999999997543 35
Q ss_pred ceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 484 KYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 484 ~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
.|..++|||||||+|||++|||++++|+|++.|||++|++||+
T Consensus 219 ~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 219 NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999985
No 15
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=8.4e-44 Score=370.11 Aligned_cols=247 Identities=28% Similarity=0.302 Sum_probs=194.6
Q ss_pred CCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccc
Q 036374 101 ESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNL 180 (706)
Q Consensus 101 G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~ 180 (706)
|+||+|||||+|||++||+|.+. +.. .+.+ .....+++.+ .......|.|. .+|||||||||+|..
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~-~~~---~~~~-~~~~~~~~~d--------~~~~~~~~~d~-~~HGT~vagii~g~~ 66 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK-YRG---WGGG-SADHDYNWFD--------PVGNTPLPYDD-NGHGTHTMGTMVGND 66 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc-ccc---cCCC-Cccccccccc--------CCCCCCCCCCC-CCchhhhhhheeecC
Confidence 89999999999999999999763 110 0011 1111111100 00013456777 899999999999874
Q ss_pred ccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH------------CCCcEEEEcccCCCCCCCh
Q 036374 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA------------DGVDIILTGATYGFAFDFA 248 (706)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~------------~gv~VIN~SlG~~~~~~~~ 248 (706)
.. +...||||+|+|+.+|++. ...+...+++++++++++ .+++|||||||.... .
T Consensus 67 ~~---------~~~~GvAp~a~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~---~ 133 (264)
T cd07481 67 GD---------GQQIGVAPGARWIACRALD-RNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG---D 133 (264)
T ss_pred CC---------CCceEECCCCeEEEEEeec-CCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC---C
Confidence 32 1128999999999999998 666888899999999975 789999999998732 2
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCce
Q 036374 249 EDAVAIGAFHAMEKGILTAVPTGNMGPKPAS---TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNK 325 (706)
Q Consensus 249 ~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (706)
...+..++..+.++|++||+||||+|..... .+...+++|+||+.+.+
T Consensus 134 ~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------------- 184 (264)
T cd07481 134 NEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----------------------------- 184 (264)
T ss_pred chHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-----------------------------
Confidence 3455566677888999999999999865432 45677899999986533
Q ss_pred eeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhH
Q 036374 326 FPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDF 405 (706)
Q Consensus 326 ~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~ 405 (706)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccce
Q 036374 406 ERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKY 485 (706)
Q Consensus 406 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y 485 (706)
+.++.||++||.. .+++||||+|||.+|+++.+. +.|
T Consensus 185 ----------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~-------------~~~ 221 (264)
T cd07481 185 ----------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG-------------GGY 221 (264)
T ss_pred ----------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCC-------------Cce
Confidence 3578899999998 799999999999999998873 468
Q ss_pred eEeccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 036374 486 NILSGTSIASAFAAGAAAYVRSFHPD--WSPSSIKSALMTTAL 526 (706)
Q Consensus 486 ~~~sGTSmAaP~VAG~aALl~~~~P~--lsp~~ik~~L~~TA~ 526 (706)
..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 222 ~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 222 GSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 89999999999999999999999999 999999999999985
No 16
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.6e-43 Score=369.94 Aligned_cols=264 Identities=25% Similarity=0.254 Sum_probs=200.2
Q ss_pred ccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccc
Q 036374 93 TVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHM 172 (706)
Q Consensus 93 ~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThV 172 (706)
.+|..+++|+||+|||||||||++||+|.+..... .++ .+...+.+..+. + .......|. .||||||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~---~~~--~~~~~~~~~~~~---~----~~~~~~~~~-~gHGT~V 67 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD---GYD--PAVNGYNFVPNV---G----DIDNDVSVG-GGHGTHV 67 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC---Ccc--cccCCccccccc---C----CcCCCCCCC-CCCHHHH
Confidence 48999999999999999999999999998651110 000 000111110000 0 001233466 8999999
Q ss_pred eeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHH
Q 036374 173 ASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAV 252 (706)
Q Consensus 173 Agi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~ 252 (706)
||||+|+..+.....|.+ .+.|+||+|+|+.+|++.....+....++++|++|++.|++|||||||... ...+...+
T Consensus 68 Agiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~-~~~~~~~~ 144 (273)
T cd07485 68 AGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG-GGIYSPLL 144 (273)
T ss_pred HHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-ccccCHHH
Confidence 999999764332222221 236799999999999998333477888999999999999999999999873 22344567
Q ss_pred HHHHHHHHhC-------CcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCce
Q 036374 253 AIGAFHAMEK-------GILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNK 325 (706)
Q Consensus 253 ~~a~~~a~~~-------Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (706)
..++..+.++ |+++|+||||+|......+...+++|+||+++.+
T Consensus 145 ~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~----------------------------- 195 (273)
T cd07485 145 KDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN----------------------------- 195 (273)
T ss_pred HHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC-----------------------------
Confidence 7777788887 9999999999998766667788999999986533
Q ss_pred eeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhH
Q 036374 326 FPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDF 405 (706)
Q Consensus 326 ~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~ 405 (706)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCC-cEEecccCCCCCCCCCCCCcccc
Q 036374 406 ERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAV-QILAAYTGGWGPSNHPMDHRFVK 484 (706)
Q Consensus 406 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~-~I~sa~~~~~~~~~~~~~~~~~~ 484 (706)
+.++.||++|+.. ||+|||. .|+++.+.... .....
T Consensus 196 ----------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~-------~~~~~ 232 (273)
T cd07485 196 ----------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG-------DGGGN 232 (273)
T ss_pred ----------------------------CCcCccccCCCce--------EEEeCCCCccccccccccC-------CCCCC
Confidence 3467899999977 9999999 88887764311 11356
Q ss_pred eeEeccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 036374 485 YNILSGTSIASAFAAGAAAYVRSFHPD-WSPSSIKSALMTT 524 (706)
Q Consensus 485 y~~~sGTSmAaP~VAG~aALl~~~~P~-lsp~~ik~~L~~T 524 (706)
|..++|||||||+|||++|||+|++|. |+|+|||++|++|
T Consensus 233 ~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 233 YEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred eEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 899999999999999999999999999 9999999999986
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-43 Score=366.51 Aligned_cols=258 Identities=28% Similarity=0.400 Sum_probs=204.8
Q ss_pred CCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccc
Q 036374 101 ESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNL 180 (706)
Q Consensus 101 G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~ 180 (706)
|+||+|+|||+|||++||+|.+.... .+ .+... ........|. .+|||||||||+|..
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~~---------~~~~~--------~~~~~~~~d~-~~HGT~vAgiiag~~ 58 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----FA---------DFVNT--------VNGRTTPYDD-NGHGTHVAGIIAGSG 58 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----cc---------ccccc--------ccCCCCCCCC-CCchHHHHHHHhcCC
Confidence 89999999999999999999753211 00 11000 0012345677 899999999999985
Q ss_pred ccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHC----CCcEEEEcccCCCCCCChhhHHHHHH
Q 036374 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIAD----GVDIILTGATYGFAFDFAEDAVAIGA 256 (706)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~----gv~VIN~SlG~~~~~~~~~~~~~~a~ 256 (706)
... .+.+.|+||+|+|+.+|+++........++++|++++++. +++|||||||...........+..++
T Consensus 59 ~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~~ 131 (264)
T cd07487 59 RAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAV 131 (264)
T ss_pred ccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHHH
Confidence 421 2234999999999999999833337788999999999998 99999999999844455677888899
Q ss_pred HHHHhCCcEEEEecCCCCCCCC--CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCC
Q 036374 257 FHAMEKGILTAVPTGNMGPKPA--STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTN 334 (706)
Q Consensus 257 ~~a~~~Gv~vV~AAGN~G~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~ 334 (706)
.++.++|+++|+||||++.... ..+...+++|+||+.+.+..
T Consensus 132 ~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------------------------ 175 (264)
T cd07487 132 ERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------------------------ 175 (264)
T ss_pred HHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------------------------------
Confidence 9999999999999999998765 44567899999999765420
Q ss_pred CCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhc
Q 036374 335 ASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINS 414 (706)
Q Consensus 335 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~ 414 (706)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccch
Q 036374 415 TEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIA 494 (706)
Q Consensus 415 ~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 494 (706)
....++.||++||+. ++++||||+|||.+|++..+..... .....+.|..++|||||
T Consensus 176 -----------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~~~~GTS~A 232 (264)
T cd07487 176 -----------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVGSGYFEMSGTSMA 232 (264)
T ss_pred -----------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCCCceEeccccchH
Confidence 012378899999998 8999999999999999986543110 11224678999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 495 SAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 495 aP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
||+|||++|||+|++|.|++.+||++|++||+
T Consensus 233 ap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 233 TPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999999999985
No 18
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-42 Score=363.13 Aligned_cols=257 Identities=21% Similarity=0.270 Sum_probs=189.0
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQ 165 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~ 165 (706)
+.++++ .+|+.+.+|+||+|||||||||..|| |...++ .+ ..... . .......|.
T Consensus 6 ~~l~~~-~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~-~~~~~----~----------~~~~~~~D~- 60 (298)
T cd07494 6 ALLNAT-RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QV-RVVLA----P----------GATDPACDE- 60 (298)
T ss_pred hhcChh-HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cc-eeecC----C----------CCCCCCCCC-
Confidence 467788 99999999999999999999999998 754321 11 10000 0 001234566
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAF 245 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~ 245 (706)
.|||||||+++ .||||+|+|+.+|+++ . ..+++++||+||++.+++|||||||.....
T Consensus 61 ~gHGT~vag~i------------------~GvAP~a~i~~vkv~~-~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~ 118 (298)
T cd07494 61 NGHGTGESANL------------------FAIAPGAQFIGVKLGG-P---DLVNSVGAFKKAISLSPDIISNSWGYDLRS 118 (298)
T ss_pred CCcchheeece------------------eEeCCCCeEEEEEccC-C---CcHHHHHHHHHHHhcCCCEEEeecccCCCC
Confidence 89999999876 7899999999999988 2 567899999999999999999999986321
Q ss_pred C---------ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeec
Q 036374 246 D---------FAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAV 316 (706)
Q Consensus 246 ~---------~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~ 316 (706)
. .....+..++.+|.++|++||+||||++. .+++..|++|+||+++.+.. +..
T Consensus 119 ~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~------ 180 (298)
T cd07494 119 PGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GAR------ 180 (298)
T ss_pred cccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccc------
Confidence 1 12345777888899999999999999974 46888999999999864420 000
Q ss_pred cCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCcc
Q 036374 317 NPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFP 396 (706)
Q Consensus 317 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p 396 (706)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCce----------------EecC
Q 036374 397 TVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDI----------------SAPA 460 (706)
Q Consensus 397 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi----------------~APG 460 (706)
......+.|+|. . .+++.|||+ +|||
T Consensus 181 ----------------------------------~~~~~~~~~~s~--~--~~g~~~pd~~~~~g~~~~~~~~~~~~APG 222 (298)
T cd07494 181 ----------------------------------RASSYASGFRSK--I--YPGRQVPDVCGLVGMLPHAAYLMLPVPPG 222 (298)
T ss_pred ----------------------------------cccccccCcccc--c--CCCCccCccccccCcCCcccccccccCCC
Confidence 000001112211 1 256677777 4799
Q ss_pred CcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCC
Q 036374 461 VQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNG 530 (706)
Q Consensus 461 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~ 530 (706)
..|.++..... . .......|..++|||||||||||++|||+|++|.|+++|||++|++||+++..
T Consensus 223 ~~i~~~~~~~~-~----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 223 SQLDRSCAAFP-D----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred cceeccccCCC-C----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 99876553210 0 01113569999999999999999999999999999999999999999998766
No 19
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.8e-42 Score=359.63 Aligned_cols=249 Identities=29% Similarity=0.325 Sum_probs=205.3
Q ss_pred CCccccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcc
Q 036374 83 RSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTR 162 (706)
Q Consensus 83 ~s~~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~ 162 (706)
+.++.++.+ .+|..+ +|+||+|||||+|||++||+|.... ...+.++. .+..++.
T Consensus 11 w~~~~~~~~-~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~------------~~~~~~~~-----------~~~~~~~ 65 (260)
T cd07484 11 WNLDQIGAP-KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVK------------FVLGYDFV-----------DNDSDAM 65 (260)
T ss_pred CCccccChH-HHHhhc-CCCCCEEEEEeCCCCCCCcccccCC------------cccceecc-----------CCCCCCC
Confidence 345567888 899988 9999999999999999999984321 11111221 1123466
Q ss_pred cccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCC
Q 036374 163 EYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYG 242 (706)
Q Consensus 163 D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~ 242 (706)
|. .+|||||||||++....+. .+.|+||+|+|+.+|+++....+...+++++|+++++.+++|||||||..
T Consensus 66 d~-~~HGT~vagii~~~~~~~~--------~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~ 136 (260)
T cd07484 66 DD-NGHGTHVAGIIAAATNNGT--------GVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGG 136 (260)
T ss_pred CC-CCcHHHHHHHHhCccCCCC--------ceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 77 8999999999998753322 23899999999999999833347888999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCC
Q 036374 243 FAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMK 322 (706)
Q Consensus 243 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 322 (706)
. ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 137 ~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------- 186 (260)
T cd07484 137 L----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------------- 186 (260)
T ss_pred C----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------------
Confidence 3 3456777777888999999999999998877888889999999986533
Q ss_pred CceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEech
Q 036374 323 GNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKM 402 (706)
Q Consensus 323 ~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~ 402 (706)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcc
Q 036374 403 EDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRF 482 (706)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~ 482 (706)
+..+.||++|+.. |+.|||.+|++..+.
T Consensus 187 -------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~------------- 214 (260)
T cd07484 187 -------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD------------- 214 (260)
T ss_pred -------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC-------------
Confidence 3467889999876 999999999988763
Q ss_pred cceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 036374 483 VKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLM 528 (706)
Q Consensus 483 ~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~ 528 (706)
+.|..++|||||||+|||++||+++++| |++++||++|++||+++
T Consensus 215 ~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 4689999999999999999999999999 99999999999999876
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.6e-43 Score=368.62 Aligned_cols=264 Identities=23% Similarity=0.219 Sum_probs=186.6
Q ss_pred cEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccC
Q 036374 104 MIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVG 183 (706)
Q Consensus 104 VvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~ 183 (706)
.+|||||||||.+||+|... ...+..+ +.. ...+.|. .||||||||||++....
T Consensus 1 p~VaviDtGi~~~hp~l~~~-------------~~~~~~~-~~~----------~~~~~d~-~gHGT~vAgiia~~~~~- 54 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPA-------------LAEDDLD-SDE----------PGWTADD-LGHGTAVAGLALYGDLT- 54 (291)
T ss_pred CEEEEecCCCCCCChhhhhh-------------hcccccc-ccC----------CCCcCCC-CCChHHHHHHHHcCccc-
Confidence 37999999999999999642 1111111 000 0114577 99999999999976432
Q ss_pred CCcccCCCcceeeccCCCeEEEEEeecCCCC-----CCHHHHHHHHHHHHHCC---CcEEEEcccCCCCCCCh-hhHHHH
Q 036374 184 ASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-----CNEADILAAFDDAIADG---VDIILTGATYGFAFDFA-EDAVAI 254 (706)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-----~~~~~i~~ai~~ai~~g---v~VIN~SlG~~~~~~~~-~~~~~~ 254 (706)
.....|+||+|+|+.+|++. ..+ ....++++||+++++.+ ++|||||||........ ...+..
T Consensus 55 -------~~~~~gvap~~~l~~~kv~~-~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~ 126 (291)
T cd04847 55 -------LPGNGLPRPGCRLESVRVLP-PNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAA 126 (291)
T ss_pred -------CCCCCCcccceEEEEEEEcC-CCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHH
Confidence 11238999999999999999 432 56778999999999853 49999999997332211 124444
Q ss_pred HHHH-HHhCCcEEEEecCCCCCCCCC------------cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCC
Q 036374 255 GAFH-AMEKGILTAVPTGNMGPKPAS------------TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTM 321 (706)
Q Consensus 255 a~~~-a~~~Gv~vV~AAGN~G~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 321 (706)
++++ +.++|++||+||||+|..... .+..++++|+|||.+.+.........
T Consensus 127 ~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~---------------- 190 (291)
T cd04847 127 ALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY---------------- 190 (291)
T ss_pred HHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc----------------
Confidence 5543 568999999999999976543 23457899999998765311000000
Q ss_pred CCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEec
Q 036374 322 KGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILK 401 (706)
Q Consensus 322 ~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~ 401 (706)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCC-----CCC
Q 036374 402 MEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGP-----SNH 476 (706)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~-----~~~ 476 (706)
+.......+.||||||.. ++.+||||+|||++|.+........ ...
T Consensus 191 ---------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~ 241 (291)
T cd04847 191 ---------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTT 241 (291)
T ss_pred ---------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeec
Confidence 000011233499999998 9999999999999998865421100 000
Q ss_pred CCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 477 PMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 477 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
........|..++|||||||+|||+||||++++|+++|++||++|++||+
T Consensus 242 ~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 242 LSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 01122467999999999999999999999999999999999999999985
No 21
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=5.2e-42 Score=355.04 Aligned_cols=233 Identities=29% Similarity=0.380 Sum_probs=193.6
Q ss_pred cccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccce
Q 036374 94 VKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMA 173 (706)
Q Consensus 94 ~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVA 173 (706)
.|..+++|+||+|||||+||+++||+|.+. ...+++|. ...+..|. .+||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~-------------~~~~~~~~------------~~~~~~d~-~~HGT~vA 70 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR-------------AIWGADFV------------GGDPDSDC-NGHGTHVA 70 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC-------------eeeeeecC------------CCCCCCCC-CccHHHHH
Confidence 667789999999999999999999999742 11112221 11224566 89999999
Q ss_pred eecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHC-----CCcEEEEcccCCCCCCCh
Q 036374 174 SIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIAD-----GVDIILTGATYGFAFDFA 248 (706)
Q Consensus 174 gi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~-----gv~VIN~SlG~~~~~~~~ 248 (706)
|||++.. .||||+|+|+.+|+++.......++++++++++++. +++|||||||...
T Consensus 71 giia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~----- 131 (255)
T cd04077 71 GTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA----- 131 (255)
T ss_pred HHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC-----
Confidence 9999863 799999999999999833347788999999999986 4899999999872
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceee
Q 036374 249 EDAVAIGAFHAMEKGILTAVPTGNMGPKP-ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFP 327 (706)
Q Consensus 249 ~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 327 (706)
...+..++.++.++|+++|+||||+|... ...+...+++|+||+.+.+
T Consensus 132 ~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------------------------------- 180 (255)
T cd04077 132 STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------------------------------- 180 (255)
T ss_pred CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------------------------------
Confidence 45677788889999999999999999765 3446678999999987643
Q ss_pred eEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHH
Q 036374 328 LSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFER 407 (706)
Q Consensus 328 lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~ 407 (706)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeE
Q 036374 408 VKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNI 487 (706)
Q Consensus 408 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 487 (706)
+.++.||++||.. ||+|||.+|+++.... ...|..
T Consensus 181 --------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~-----------~~~~~~ 215 (255)
T cd04077 181 --------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS-----------DTATAT 215 (255)
T ss_pred --------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC-----------CCcEEe
Confidence 2367899999987 9999999999887642 356899
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 036374 488 LSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALL 527 (706)
Q Consensus 488 ~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~ 527 (706)
++|||||||+|||++|||++++|++++++||++|++||++
T Consensus 216 ~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 216 LSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred eCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999975
No 22
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.3e-41 Score=359.50 Aligned_cols=277 Identities=28% Similarity=0.318 Sum_probs=200.9
Q ss_pred CCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeec
Q 036374 97 EPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIA 176 (706)
Q Consensus 97 ~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ 176 (706)
.+++|+||+|||||+|||++||+|.+... .+..+ .++++.....+. ..+.|. .+|||||||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~-------------~~~~~-~~~~~~~~~~~~--~~~~d~-~~HGT~vAgii 64 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF-------------NKTNL-FHRKIVRYDSLS--DTKDDV-DGHGTHVAGII 64 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc-------------CcCcc-CcccEEEeeccC--CCCCCC-CCCcchhheee
Confidence 57899999999999999999999975321 01111 233444433332 222366 89999999999
Q ss_pred ccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHH
Q 036374 177 AGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAI 254 (706)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~ 254 (706)
+|........ ..+.|+||+|+|+.+|++. ..+ ....++.++++++.+.+++|||||||..... .......
T Consensus 65 a~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~--~~~~~~~ 136 (293)
T cd04842 65 AGKGNDSSSI-----SLYKGVAPKAKLYFQDIGD-TSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN--GYTLLAR 136 (293)
T ss_pred ccCCcCCCcc-----cccccccccCeEEEEEeec-cCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc--ccchHHH
Confidence 9986443211 1349999999999999998 443 5667788999999999999999999998321 1123333
Q ss_pred HHHHHH-h-CCcEEEEecCCCCCCCC---CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeE
Q 036374 255 GAFHAM-E-KGILTAVPTGNMGPKPA---STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLS 329 (706)
Q Consensus 255 a~~~a~-~-~Gv~vV~AAGN~G~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv 329 (706)
++.++. + +|+++|+||||+|.... ..+...+++|+|||++.+.....
T Consensus 137 ~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~---------------------------- 188 (293)
T cd04842 137 AYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG---------------------------- 188 (293)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc----------------------------
Confidence 343333 3 79999999999997654 55668899999999876531000
Q ss_pred eccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHH
Q 036374 330 YGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVK 409 (706)
Q Consensus 330 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~ 409 (706)
..|..
T Consensus 189 ---------------~~~~~------------------------------------------------------------ 193 (293)
T cd04842 189 ---------------EGGLG------------------------------------------------------------ 193 (293)
T ss_pred ---------------ccccc------------------------------------------------------------
Confidence 00000
Q ss_pred HHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEec
Q 036374 410 LYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILS 489 (706)
Q Consensus 410 ~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 489 (706)
.......++.||++||+. ++++||||+|||++|+++..... .........|..++
T Consensus 194 -------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~~~~~~~~~~~ 248 (293)
T cd04842 194 -------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGDTSDSAYTSKS 248 (293)
T ss_pred -------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCCCChhheeecC
Confidence 001235689999999998 89999999999999999875420 00111245789999
Q ss_pred cccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 036374 490 GTSIASAFAAGAAAYVRSFH-----P---DWSPSSIKSALMTTAL 526 (706)
Q Consensus 490 GTSmAaP~VAG~aALl~~~~-----P---~lsp~~ik~~L~~TA~ 526 (706)
|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 249 GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 249 GTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999999999999985 4 6677899999999985
No 23
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8e-42 Score=353.54 Aligned_cols=253 Identities=26% Similarity=0.301 Sum_probs=187.5
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccccc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVV 182 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~ 182 (706)
||+|||||+|||++||+|.+.- ....+|..++ .. ....+.|. .+|||||||||+|+..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~-------------~~~~~~~~~~------~~-~~~~~~d~-~~HGT~vAgiia~~~~- 58 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV-------------AQWADFDENR------RI-SATEVFDA-GGHGTHVSGTIGGGGA- 58 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc-------------CCceeccCCC------CC-CCCCCCCC-CCcHHHHHHHHhcCCC-
Confidence 7999999999999999997531 1111111110 00 02334566 8999999999999853
Q ss_pred CCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHh-
Q 036374 183 GASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAME- 261 (706)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~- 261 (706)
.+...|+||+|+|+.+|++. ..++..++++++|+++++.+++|||||||..... .+++..+++.+.+
T Consensus 59 --------~~~~~GvAp~a~i~~~~v~~-~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~~~~ 126 (254)
T cd07490 59 --------KGVYIGVAPEADLLHGKVLD-DGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEALSNQ 126 (254)
T ss_pred --------CCCEEEECCCCEEEEEEEec-CCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHHHHc
Confidence 22348999999999999998 5558889999999999999999999999987322 4566665555554
Q ss_pred CCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCc
Q 036374 262 KGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSE 341 (706)
Q Consensus 262 ~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~ 341 (706)
+|++||+||||+|......+...+++|+|||++.+.........
T Consensus 127 ~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------------------------------ 170 (254)
T cd07490 127 TGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------------------------------ 170 (254)
T ss_pred CCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC------------------------------------
Confidence 69999999999998766777788999999998754210000000
Q ss_pred ccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEE
Q 036374 342 LASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVH 421 (706)
Q Consensus 342 ~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 421 (706)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHH
Q 036374 422 ILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGA 501 (706)
Q Consensus 422 i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 501 (706)
........+.+|.. .....|||++|||.+|+++.... ...+.|..++|||||||+|||+
T Consensus 171 -----------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~AaP~vaG~ 229 (254)
T cd07490 171 -----------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAAPHVAGV 229 (254)
T ss_pred -----------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHHHHHHHH
Confidence 00012223334433 25678999999999999865321 1146699999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 502 AAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 502 aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
+|||++++|+|++++||++|++||+
T Consensus 230 aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 230 AALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999985
No 24
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-41 Score=356.42 Aligned_cols=251 Identities=24% Similarity=0.290 Sum_probs=188.9
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCce-----------eEee-eecC---------CCCCc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNK-----------IIGA-RYYS---------GINTT 161 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k-----------~ig~-~~~~---------~~~~~ 161 (706)
||+|||||||||++||+|.+.- ..+++|..+.. .... .+++ .....
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~-------------~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 67 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVL-------------LPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGV 67 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcc-------------ccCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCC
Confidence 7999999999999999997642 11222211000 0000 0000 01223
Q ss_pred ccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHH----------HCC
Q 036374 162 REYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAI----------ADG 231 (706)
Q Consensus 162 ~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai----------~~g 231 (706)
.|. .+|||||||||+|...++. | +.||||+|+|+.+|+++ ..+...+++++|++|++ .++
T Consensus 68 ~~~-~~HGT~vAgiiaa~~~~~~---~-----~~GvAp~a~i~~~~v~~-~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 68 SPS-SWHGTHVAGTIAAVTNNGV---G-----VAGVAWGARILPVRVLG-KCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCC-CCCHHHHHHHHhCcCCCCC---C-----ceeecCCCeEEEEEEec-CCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 455 7899999999999864322 2 28999999999999998 66668899999999998 457
Q ss_pred CcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCceEEEccccCCcceeeeEEeCCCeE
Q 036374 232 VDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKP-ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTT 310 (706)
Q Consensus 232 v~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~ 310 (706)
++|||||||..... ...+..++..+.++|++||+||||+|... ...+...+++|+||+++.+
T Consensus 138 ~~Iin~S~G~~~~~---~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------- 200 (285)
T cd07496 138 AKVINLSLGGDGAC---SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR-------------- 200 (285)
T ss_pred CeEEEeCCCCCCCC---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC--------------
Confidence 89999999987221 45677788889999999999999999875 4556778899999987543
Q ss_pred EeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCC
Q 036374 311 LVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMS 390 (706)
Q Consensus 311 ~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 390 (706)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCC
Q 036374 391 HPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGG 470 (706)
Q Consensus 391 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~ 470 (706)
+.++.||++||.. ||+|||++|.+.....
T Consensus 201 -------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~~~~ 229 (285)
T cd07496 201 -------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDVNGD 229 (285)
T ss_pred -------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccCCCC
Confidence 3478899999987 9999999999887643
Q ss_pred CCCC--CCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 036374 471 WGPS--NHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTT 524 (706)
Q Consensus 471 ~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~T 524 (706)
.... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 230 GYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2110 00112224568999999999999999999999999999999999999976
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-41 Score=347.97 Aligned_cols=241 Identities=27% Similarity=0.315 Sum_probs=190.4
Q ss_pred cEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccC
Q 036374 104 MIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVG 183 (706)
Q Consensus 104 VvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~ 183 (706)
|+|||||+|||++||+|.+.. ....++++..+ ...+.|. .+|||||||||+|+..+.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-----------~~~~~~~~~~~-----------~~~~~~~-~~HGT~vAgiiag~~~~~ 57 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-----------KLVPGWNFVSN-----------NDPTSDI-DGHGTACAGVAAAVGNNG 57 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-----------CccCCccccCC-----------CCCCCCC-CCCHHHHHHHHHhccCCC
Confidence 789999999999999997520 01111122111 1234566 899999999999985322
Q ss_pred CCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHh-C
Q 036374 184 ASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAME-K 262 (706)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~-~ 262 (706)
..+.|+||+|+|+.+|++.....+...++.++++++++.+++|||||||...........+..++..+.+ +
T Consensus 58 --------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~ 129 (242)
T cd07498 58 --------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGK 129 (242)
T ss_pred --------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcC
Confidence 2238999999999999998333467889999999999999999999999874444456677778888888 9
Q ss_pred CcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcc
Q 036374 263 GILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSEL 342 (706)
Q Consensus 263 Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~ 342 (706)
|+++|+||||+|......+...+++|+||+.+.+
T Consensus 130 gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------------------------------- 163 (242)
T cd07498 130 GGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------------------------------- 163 (242)
T ss_pred CeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------------------------------
Confidence 9999999999998776667789999999987643
Q ss_pred cccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEE
Q 036374 343 ASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHI 422 (706)
Q Consensus 343 ~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i 422 (706)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHH
Q 036374 423 LRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAA 502 (706)
Q Consensus 423 ~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 502 (706)
+.+++||++||.. |++|||.+++......... .....+.|..++|||||||+|||++
T Consensus 164 -----------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~ 220 (242)
T cd07498 164 -----------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFASPVAAGVA 220 (242)
T ss_pred -----------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHHHHHHHHHH
Confidence 3467899999987 9999999998875432111 1122456889999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHhc
Q 036374 503 AYVRSFHPDWSPSSIKSALMTT 524 (706)
Q Consensus 503 ALl~~~~P~lsp~~ik~~L~~T 524 (706)
|||+|++|+|+++|||++|++|
T Consensus 221 All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 221 ALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999976
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.9e-41 Score=355.94 Aligned_cols=264 Identities=25% Similarity=0.227 Sum_probs=184.1
Q ss_pred cCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceee
Q 036374 96 REPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASI 175 (706)
Q Consensus 96 ~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi 175 (706)
..+++|+||+|||||+|||.+||+|.+... ...+ |.+..++.|. .|||||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~-------------~~~~------------~~~~~~~~d~-~gHGT~VAgi 55 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI-------------TTKS------------FVGGEDVQDG-HGHGTHCAGT 55 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc-------------cCcc------------cCCCCCCCCC-CCcHHHHHHH
Confidence 357899999999999999999999975311 1111 1112234577 8999999999
Q ss_pred cccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCC--------C-C
Q 036374 176 AAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFA--------F-D 246 (706)
Q Consensus 176 ~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~--------~-~ 246 (706)
|+|+..+ +...||||+|+|+.+|++.....+...++++||+||++.|++|||||||.... . .
T Consensus 56 iag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~ 126 (297)
T cd07480 56 IFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGL 126 (297)
T ss_pred HhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCc
Confidence 9997532 22379999999999999983344777789999999999999999999998631 0 1
Q ss_pred ChhhHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCcc-----cCCCceEEEccccCCcceeeeEEeC
Q 036374 247 FAEDAVAIGAFHA---------------MEKGILTAVPTGNMGPKPASTV-----VVAPWILTVAGSSIDRPFIDKAILG 306 (706)
Q Consensus 247 ~~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~G~~~~~~~-----~~~p~vitVga~~~~~~~~~~~~~~ 306 (706)
.....+......+ .++|+++|+||||+|....... ...+.++.|++....
T Consensus 127 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~---------- 196 (297)
T cd07480 127 AFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL---------- 196 (297)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC----------
Confidence 1112233222233 6789999999999986543221 112233333332211
Q ss_pred CCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCC
Q 036374 307 DGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPAS 386 (706)
Q Consensus 307 ~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~ 386 (706)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEec
Q 036374 387 TIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAA 466 (706)
Q Consensus 387 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa 466 (706)
+....|+++.+ ....||||+|||.+|+++
T Consensus 197 -----------------------------------------------~~~~~~~~~~~----~~~~~~dv~ApG~~i~s~ 225 (297)
T cd07480 197 -----------------------------------------------GRTGNFSAVAN----FSNGEVDIAAPGVDIVSA 225 (297)
T ss_pred -----------------------------------------------CCCCCccccCC----CCCCceEEEeCCCCeEee
Confidence 11122222222 234578999999999988
Q ss_pred ccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCC--CCCCCCCCCCCCCC
Q 036374 467 YTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNG--TVNRGREFDYGSGH 544 (706)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~--~~~~~~~~~~G~G~ 544 (706)
.+ ++.|..++|||||||+|||++|||+|++|++++.+++.+|++....... .........+|+|+
T Consensus 226 ~~-------------~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~g~G~ 292 (297)
T cd07480 226 AP-------------GGGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVGL 292 (297)
T ss_pred cC-------------CCcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCCCCCChhhcCCce
Confidence 76 3569999999999999999999999999999999888888854332111 11124567899999
Q ss_pred CCcc
Q 036374 545 IDPV 548 (706)
Q Consensus 545 id~~ 548 (706)
+++.
T Consensus 293 ~~~~ 296 (297)
T cd07480 293 GLAP 296 (297)
T ss_pred eecC
Confidence 8875
No 27
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.4e-41 Score=349.83 Aligned_cols=248 Identities=19% Similarity=0.102 Sum_probs=179.4
Q ss_pred cCCccccccCCC-CCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccC
Q 036374 88 MGFPETVKREPT-VESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQL 166 (706)
Q Consensus 88 ig~~~~~~~~~~-~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~ 166 (706)
|+++ .+|+... .|+||+|+|||+|||.+||+|.+.... . .. ...+.|. .
T Consensus 2 i~~~-~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~-------~------~~---------------~~~~~d~-~ 51 (277)
T cd04843 2 INAR-YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT-------L------IS---------------GLTDQAD-S 51 (277)
T ss_pred CChH-HHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc-------c------cC---------------CCCCCCC-C
Confidence 4566 8998744 599999999999999999999753111 0 00 0124566 8
Q ss_pred CCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH----CCCcEEEEcccCC
Q 036374 167 GHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA----DGVDIILTGATYG 242 (706)
Q Consensus 167 gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~----~gv~VIN~SlG~~ 242 (706)
+|||||||||+|..+ ..| +.||||+|+|+++|++. .++++++|++|++ .++.+||||||..
T Consensus 52 gHGT~VAGiIaa~~n--------~~G-~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~s~g~~ 116 (277)
T cd04843 52 DHGTAVLGIIVAKDN--------GIG-VTGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEMQTGGP 116 (277)
T ss_pred CCcchhheeeeeecC--------CCc-eeeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEccccCC
Confidence 999999999998631 112 38999999999999985 2356677777776 4567899999986
Q ss_pred CCCC-----ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcc-------------cCCCceEEEccccCCcceeeeEE
Q 036374 243 FAFD-----FAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTV-------------VVAPWILTVAGSSIDRPFIDKAI 304 (706)
Q Consensus 243 ~~~~-----~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~-------------~~~p~vitVga~~~~~~~~~~~~ 304 (706)
.... .....+..++.++.++|+++|+||||++....... ...+++|+|||++.+.
T Consensus 117 ~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~------- 189 (277)
T cd04843 117 NNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT------- 189 (277)
T ss_pred CcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC-------
Confidence 3211 12334556777888999999999999986531111 1235678887765321
Q ss_pred eCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEec
Q 036374 305 LGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQP 384 (706)
Q Consensus 305 ~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~ 384 (706)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEE
Q 036374 385 ASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQIL 464 (706)
Q Consensus 385 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~ 464 (706)
...++.||++||.. ||.|||++|+
T Consensus 190 ------------------------------------------------~~~~~~fSn~G~~v--------di~APG~~i~ 213 (277)
T cd04843 190 ------------------------------------------------GHTRLAFSNYGSRV--------DVYGWGENVT 213 (277)
T ss_pred ------------------------------------------------CCccccccCCCCcc--------ceEcCCCCeE
Confidence 01278899999987 9999999999
Q ss_pred ecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 036374 465 AAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRS----F-HPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 465 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~lsp~~ik~~L~~TA~ 526 (706)
++....... ..+...+.|..++|||||||||||++|||++ + +|+|+|+|||++|++|++
T Consensus 214 s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 214 TTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred ecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 998653211 0111123357899999999999999999975 3 499999999999999974
No 28
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=351.20 Aligned_cols=323 Identities=25% Similarity=0.288 Sum_probs=248.5
Q ss_pred eEEEEEecCCCCCCCCchhHHHHHHHhccC------cccCCc------------cEEEEec---ceeeEEEEEcCHHHHH
Q 036374 2 QVCIVYMGSLPAGEYSPLAHHLSVLQEGIQ------DSLAND------------VLVRSYE---RSFNGFAAKLTDEEQN 60 (706)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~------------~i~~~y~---~~~ng~s~~~~~~~~~ 60 (706)
..|||.++ +...++.+..|.+++.+.-.. .++... .|.+.|. .+|+|+.-.++.+-+.
T Consensus 81 ~~YiV~f~-~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v~ 159 (501)
T KOG1153|consen 81 SRYIVVFK-PDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESVC 159 (501)
T ss_pred cceEEEeC-CCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccceee
Confidence 37999999 444455677777776554331 111111 1555554 3889999999999999
Q ss_pred HHhcCCCeeEEEcccccccc--------ccCCccccCCcc------cccc----CCCCCCCcEEEEEccccCCCCcCCCC
Q 036374 61 RISRMDGIVSVFPSKTLQLQ--------TTRSWDFMGFPE------TVKR----EPTVESDMIIGVLDNGIWPESDMFDD 122 (706)
Q Consensus 61 ~L~~~~~V~~v~~~~~~~~~--------~~~s~~~ig~~~------~~~~----~~~~G~GVvVgVIDtGid~~Hp~f~~ 122 (706)
.++++|-++.++++...... +.-.|.+-.+.. .-|- +...|+||...|+||||+.+||+|.+
T Consensus 160 ~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFeg 239 (501)
T KOG1153|consen 160 SIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFEG 239 (501)
T ss_pred eeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccccccc
Confidence 99999999999998776542 222333322211 1121 23489999999999999999999976
Q ss_pred CCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCe
Q 036374 123 KSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSAR 202 (706)
Q Consensus 123 ~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~ 202 (706)
+. .| | .|.. .+ ..-.|+ +||||||||+|++.. .|+|-+++
T Consensus 240 Ra------~w-G-a~i~-----~~------------~~~~D~-nGHGTH~AG~I~sKt--------------~GvAK~s~ 279 (501)
T KOG1153|consen 240 RA------IW-G-ATIP-----PK------------DGDEDC-NGHGTHVAGLIGSKT--------------FGVAKNSN 279 (501)
T ss_pred ce------ec-c-cccC-----CC------------Cccccc-CCCcceeeeeeeccc--------------cccccccc
Confidence 42 23 2 1211 00 122466 999999999999985 89999999
Q ss_pred EEEEEeecCCCCCCHHHHHHHHHHHHHC---------CCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCC
Q 036374 203 IAAYRVCHYPWPCNEADILAAFDDAIAD---------GVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNM 273 (706)
Q Consensus 203 l~~~kv~~~~~g~~~~~i~~ai~~ai~~---------gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~ 273 (706)
|+++||+++++.+..+++++++|++++. +..|.|||+|+. ..-.+..|++.|.+.|+++++||||+
T Consensus 280 lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-----~S~aLn~AV~~A~~~Gi~fa~AAGNe 354 (501)
T KOG1153|consen 280 LVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-----RSAALNMAVNAASERGIHFAVAAGNE 354 (501)
T ss_pred eEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-----ccHHHHHHHHHHhhcCeEEEEcCCCc
Confidence 9999999965559999999999999985 568999999998 33578889999999999999999999
Q ss_pred CCCCC-CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCC
Q 036374 274 GPKPA-STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCL 352 (706)
Q Consensus 274 G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~ 352 (706)
-.+.+ +.++.+..+|||||++..
T Consensus 355 ~eDAC~~SPass~~aITVGAst~~-------------------------------------------------------- 378 (501)
T KOG1153|consen 355 HEDACNSSPASSKKAITVGASTKN-------------------------------------------------------- 378 (501)
T ss_pred chhhhccCcccccccEEecccccc--------------------------------------------------------
Confidence 87765 456688999999998754
Q ss_pred CCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCC
Q 036374 353 DENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDA 432 (706)
Q Consensus 353 ~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~ 432 (706)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCC-
Q 036374 433 APVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPD- 511 (706)
Q Consensus 433 ~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~- 511 (706)
+.++.||+||++. ||.|||.+|+|+|.+. ...-...||||||+|||||++|..+..+|.
T Consensus 379 -D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs-----------~~at~ilSGTSMasPhvaG~aAy~ls~~~~~ 438 (501)
T KOG1153|consen 379 -DTIAFFSNWGKCV--------DIFAPGVNILSSWIGS-----------NNATAILSGTSMASPHVAGLAAYFLSLGPLP 438 (501)
T ss_pred -cchhhhcCcccee--------eeecCchhhhhhhhcC-----------ccchheeecccccCcchhhhHHHhhhcCCCC
Confidence 5689999999999 9999999999999864 245678999999999999999999999883
Q ss_pred --------CCHHHHHHHHHhccc
Q 036374 512 --------WSPSSIKSALMTTAL 526 (706)
Q Consensus 512 --------lsp~~ik~~L~~TA~ 526 (706)
.||.++|..+..-..
T Consensus 439 ~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 439 DSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hHHhhhccCChHHhhhhhhcccc
Confidence 388888887776443
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-40 Score=342.05 Aligned_cols=251 Identities=26% Similarity=0.358 Sum_probs=190.1
Q ss_pred CCcEEEEEccccCCCCcCCCCCCCCCC-CCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccc
Q 036374 102 SDMIIGVLDNGIWPESDMFDDKSFGPP-PKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNL 180 (706)
Q Consensus 102 ~GVvVgVIDtGid~~Hp~f~~~~~~~~-~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~ 180 (706)
+||+|||||||||++||+|.+...... ...+.+ ....+..+. +...+........++.|. .+|||||||||+|..
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~d~-~~HGT~va~ii~~~~ 77 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNG-IDDDGNGYV--DDIYGWNFVNNDNDPMDD-NGHGTHVAGIIGAVG 77 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccC-cccCCCCcc--cCCCcccccCCCCCCCCC-CCcHHHHHHHHHCcC
Confidence 699999999999999999986421100 001111 111111111 001111111223556777 999999999999985
Q ss_pred ccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHH
Q 036374 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHA 259 (706)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a 259 (706)
..+. .+.|+||+|+|+.+|++. ..+ ++..+++++++++++.+++|||+|||.... ...+..++.++
T Consensus 78 ~~~~--------~~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~~~~~~~~~~ 144 (259)
T cd07473 78 NNGI--------GIAGVAWNVKIMPLKFLG-ADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQALRDAIARA 144 (259)
T ss_pred CCCC--------ceEEeCCCCEEEEEEEeC-CCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CHHHHHHHHHH
Confidence 4322 238999999999999998 544 888999999999999999999999998722 45777788888
Q ss_pred HhCCcEEEEecCCCCCCC---CCccc--CCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCC
Q 036374 260 MEKGILTAVPTGNMGPKP---ASTVV--VAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTN 334 (706)
Q Consensus 260 ~~~Gv~vV~AAGN~G~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~ 334 (706)
.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 145 ~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~-------------------------------------- 186 (259)
T cd07473 145 IDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN-------------------------------------- 186 (259)
T ss_pred HhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC--------------------------------------
Confidence 999999999999998762 22332 45788999886533
Q ss_pred CCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhc
Q 036374 335 ASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINS 414 (706)
Q Consensus 335 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~ 414 (706)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccch
Q 036374 415 TEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIA 494 (706)
Q Consensus 415 ~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 494 (706)
+.++.||++||. +||+.|||.++++..+ ...|..++|||||
T Consensus 187 -------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~-------------~~~~~~~~GTS~A 227 (259)
T cd07473 187 -------------------DALASFSNYGKK-------TVDLAAPGVDILSTSP-------------GGGYGYMSGTSMA 227 (259)
T ss_pred -------------------CCcCcccCCCCC-------CcEEEeccCCeEeccC-------------CCcEEEeccHhHH
Confidence 346679999985 4599999999999655 3568999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 495 SAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 495 aP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
||+|||++|||+|++|.+++++||++|++||+
T Consensus 228 aP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 228 TPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999985
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=6.6e-40 Score=333.78 Aligned_cols=226 Identities=31% Similarity=0.396 Sum_probs=184.7
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccccc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVV 182 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~ 182 (706)
||+|||||+||+.+||+|.+. ...+.+|..+. ...+.|. .+|||||||||++....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~-------------~~~~~~~~~~~----------~~~~~~~-~~HGT~vA~ii~~~~~~ 56 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN-------------IVGGANFTGDD----------NNDYQDG-NGHGTHVAGIIAALDNG 56 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc-------------ccCcccccCCC----------CCCCCCC-CCCHHHHHHHHhcccCC
Confidence 799999999999999999752 11122221111 0234566 89999999999997532
Q ss_pred CCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHh
Q 036374 183 GASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAME 261 (706)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~ 261 (706)
. .+.|+||+|+|+.+|+++ ..+ +...++++++++|++.|++|||||||... ....+..++..+.+
T Consensus 57 ~---------~~~giap~a~i~~~~~~~-~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~~~a~~ 122 (229)
T cd07477 57 V---------GVVGVAPEADLYAVKVLN-DDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIKKAYA 122 (229)
T ss_pred C---------ccEeeCCCCEEEEEEEEC-CCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHHHHHHH
Confidence 1 238999999999999998 444 67789999999999999999999999872 23456667778889
Q ss_pred CCcEEEEecCCCCCCCCCc--ccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCC
Q 036374 262 KGILTAVPTGNMGPKPAST--VVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPC 339 (706)
Q Consensus 262 ~Gv~vV~AAGN~G~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~ 339 (706)
+|+++|+||||++...... +...+++|+||+++.+
T Consensus 123 ~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------------------- 159 (229)
T cd07477 123 AGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------------------- 159 (229)
T ss_pred CCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-------------------------------------------
Confidence 9999999999998776554 7788999999987643
Q ss_pred CcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcE
Q 036374 340 SELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQ 419 (706)
Q Consensus 340 ~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~ 419 (706)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHH
Q 036374 420 VHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAA 499 (706)
Q Consensus 420 ~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 499 (706)
+.++.||++|+.. |+.|||.+|+++++. +.|..++|||||||+||
T Consensus 160 --------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~GTS~Aap~va 204 (229)
T cd07477 160 --------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLSGTSMATPHVA 204 (229)
T ss_pred --------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEccHHHHHHHHH
Confidence 3456799999876 999999999998773 45889999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhc
Q 036374 500 GAAAYVRSFHPDWSPSSIKSALMTT 524 (706)
Q Consensus 500 G~aALl~~~~P~lsp~~ik~~L~~T 524 (706)
|++|||+|++|++++.+||++|++|
T Consensus 205 g~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 205 GVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999976
No 31
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=8.3e-41 Score=351.18 Aligned_cols=272 Identities=31% Similarity=0.409 Sum_probs=205.7
Q ss_pred EEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCC----CCCcccccCCCcccceeeccccc
Q 036374 105 IIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSG----INTTREYQLGHGTHMASIAAGNL 180 (706)
Q Consensus 105 vVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~----~~~~~D~~~gHGThVAgi~ag~~ 180 (706)
+|||||||||++||+|....+ . ..++.+.+.+.+ .....|. .+|||||||||+|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~~-----------~--------~~~~~~~~~~~~~~~~~~~~~~~-~~HGT~va~ii~~~~ 60 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF-----------I--------WSKVPGGYNFVDGNPNPSPSDDD-NGHGTHVAGIIAGNG 60 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE-----------E--------EEEEEEEEETTTTBSTTTSSSTS-SSHHHHHHHHHHHTT
T ss_pred CEEEEcCCcCCCChhHccCCc-----------c--------cccccceeeccCCCCCcCccccC-CCccchhhhhccccc
Confidence 699999999999999971111 0 111222222321 2334566 899999999999986
Q ss_pred ccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHH-HCCCcEEEEcccCCC--CCCChhhHHHHHHH
Q 036374 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAI-ADGVDIILTGATYGF--AFDFAEDAVAIGAF 257 (706)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai-~~gv~VIN~SlG~~~--~~~~~~~~~~~a~~ 257 (706)
. ... ....|+||+|+|+.+|++. ..+....++++++++++ +.+++|||||||... ........+..+.+
T Consensus 61 -~-~~~-----~~~~Gva~~a~l~~~~i~~-~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~ 132 (282)
T PF00082_consen 61 -G-NNG-----PGINGVAPNAKLYSYKIFD-NSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAID 132 (282)
T ss_dssp -S-SSS-----SSETCSSTTSEEEEEECSS-TTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHH
T ss_pred -c-ccc-----ccccccccccccccccccc-ccccccccccchhhhhhhccCCccccccccccccccccccccccccccc
Confidence 2 111 2238999999999999987 55577888999999999 899999999999831 11223344566677
Q ss_pred HHHhCCcEEEEecCCCCCCCCC---cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCC
Q 036374 258 HAMEKGILTAVPTGNMGPKPAS---TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTN 334 (706)
Q Consensus 258 ~a~~~Gv~vV~AAGN~G~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~ 334 (706)
.+.++|+++|+||||+|..... .+...+++|+||+.+.+
T Consensus 133 ~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~-------------------------------------- 174 (282)
T PF00082_consen 133 YAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN-------------------------------------- 174 (282)
T ss_dssp HHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT--------------------------------------
T ss_pred cccccCcceeeccccccccccccccccccccccccccccccc--------------------------------------
Confidence 8889999999999999876543 44556888999886633
Q ss_pred CCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhc
Q 036374 335 ASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINS 414 (706)
Q Consensus 335 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~ 414 (706)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccch
Q 036374 415 TEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIA 494 (706)
Q Consensus 415 ~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 494 (706)
+.++.||++|+.. ..+++||||+|||.+|++.++... ...|..++|||||
T Consensus 175 -------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~GTS~A 224 (282)
T PF00082_consen 175 -------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSGTSFA 224 (282)
T ss_dssp -------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEESHHHH
T ss_pred -------------------ccccccccccccc-cccccccccccccccccccccccc----------cccccccCcCCch
Confidence 2467899997543 278999999999999988886431 1458899999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 495 SAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 495 aP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
||+|||++|||++++|+|++.+||.+|++||.++........+..||||+||+.+|++
T Consensus 225 ap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 225 APVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 9999999999999999999999999999999998732223466788999999999874
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.2e-40 Score=334.54 Aligned_cols=217 Identities=21% Similarity=0.208 Sum_probs=166.9
Q ss_pred CCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccc
Q 036374 101 ESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNL 180 (706)
Q Consensus 101 G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~ 180 (706)
+++|+|||||||||++||+|.+. ...+.+|.+...- +. .......|. .||||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~-------------i~~~~~~~~~~~~-~~---~~~~~~~d~-~gHGT~vAgiI---- 59 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK-------------IIGGKSFSPYEGD-GN---KVSPYYVSA-DGHGTAMARMI---- 59 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc-------------cccCCCCCCCCCC-cc---cCCCCCCCC-CCcHHHHHHHH----
Confidence 78999999999999999999742 1222333221100 00 001122356 89999999999
Q ss_pred ccCCCcccCCCcceeeccCCCeEEEEEeecCCC------CCCHHHHHHHHHHHHHCCCcEEEEcccCCCCC--CChhhHH
Q 036374 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPW------PCNEADILAAFDDAIADGVDIILTGATYGFAF--DFAEDAV 252 (706)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~------g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~--~~~~~~~ 252 (706)
.|+||+|+|+++|+++... .++...+++||+||+++|++|||||||..... ......+
T Consensus 60 --------------~gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l 125 (247)
T cd07491 60 --------------CRICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINEL 125 (247)
T ss_pred --------------HHHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHH
Confidence 4689999999999998322 25677899999999999999999999987221 1135678
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCC-Cc--ccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeE
Q 036374 253 AIGAFHAMEKGILTAVPTGNMGPKPA-ST--VVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLS 329 (706)
Q Consensus 253 ~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv 329 (706)
..++.+|.++|++||+||||+|.... .+ +...+++|+|||.+.+
T Consensus 126 ~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~--------------------------------- 172 (247)
T cd07491 126 ENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED--------------------------------- 172 (247)
T ss_pred HHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC---------------------------------
Confidence 88888999999999999999997654 32 3467899999997644
Q ss_pred eccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHH
Q 036374 330 YGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVK 409 (706)
Q Consensus 330 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~ 409 (706)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEec
Q 036374 410 LYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILS 489 (706)
Q Consensus 410 ~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 489 (706)
+.++.||++|+.. |+.|||++|+++.+.. ..+.|..++
T Consensus 173 ------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~----------~~~~~~~~s 210 (247)
T cd07491 173 ------------------------GGADAPVGDEDRV--------DYILPGENVEARDRPP----------LSNSFVTHT 210 (247)
T ss_pred ------------------------CCCccccCCCCcc--------eEEeCCCceecCCcCC----------CCCCeeeec
Confidence 3467799999887 9999999999887521 135699999
Q ss_pred cccchhHHHHHHHHHHHhh
Q 036374 490 GTSIASAFAAGAAAYVRSF 508 (706)
Q Consensus 490 GTSmAaP~VAG~aALl~~~ 508 (706)
|||||||||||+||||++.
T Consensus 211 GTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 211 GSSVATALAAGLAALILYC 229 (247)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999974
No 33
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=1.3e-39 Score=344.82 Aligned_cols=252 Identities=19% Similarity=0.141 Sum_probs=182.6
Q ss_pred ccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcc--cc
Q 036374 87 FMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTR--EY 164 (706)
Q Consensus 87 ~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~--D~ 164 (706)
.++++ .+|+.+++|+||+|+|||||||++||+|.+.... ..+++|..+. ....+. |.
T Consensus 25 ~~~~~-~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-----------~~~~~~~~~~---------~~~~~~~~~~ 83 (297)
T cd04059 25 DLNVT-PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-----------EASYDFNDND---------PDPTPRYDDD 83 (297)
T ss_pred CcccH-HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-----------cccccccCCC---------CCCCCccccc
Confidence 46677 8999999999999999999999999999753111 0112221110 012223 56
Q ss_pred cCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCC
Q 036374 165 QLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFA 244 (706)
Q Consensus 165 ~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~ 244 (706)
.||||||||||+|+..... ...||||+|+|+.+|++. .. ........++.++.+ .++|||||||....
T Consensus 84 -~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~ 151 (297)
T cd04059 84 -NSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLD-GD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDD 151 (297)
T ss_pred -cccCcceeeEEEeecCCCc--------ccccccccceEeEEEecC-Cc-cccHHHHHHHhcccC-CceEEECCCCCCCC
Confidence 8999999999999853221 128999999999999998 33 334445555555544 56999999998632
Q ss_pred CC---ChhhHHHHHHHHHHh-----CCcEEEEecCCCCCCCCC----cccCCCceEEEccccCCcceeeeEEeCCCeEEe
Q 036374 245 FD---FAEDAVAIGAFHAME-----KGILTAVPTGNMGPKPAS----TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLV 312 (706)
Q Consensus 245 ~~---~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 312 (706)
.. ........++.++.+ +|+++|+||||+|..... .....+++|+|||++.+
T Consensus 152 ~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~---------------- 215 (297)
T cd04059 152 GKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN---------------- 215 (297)
T ss_pred CCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC----------------
Confidence 21 122233444445443 699999999999973221 12356889999987643
Q ss_pred eeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCC
Q 036374 313 GDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHP 392 (706)
Q Consensus 313 g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 392 (706)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCc-------EEe
Q 036374 393 TPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQ-------ILA 465 (706)
Q Consensus 393 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~-------I~s 465 (706)
+.++.||++|+.. ++.|||.. |++
T Consensus 216 -----------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~ 246 (297)
T cd04059 216 -----------------------------------------GVRASYSEVGSSV--------LASAPSGGSGNPEASIVT 246 (297)
T ss_pred -----------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCCCCCceEe
Confidence 3467899999988 89999987 665
Q ss_pred cccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 466 AYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 466 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
+.... ....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 247 ~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 247 TDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 54421 0245778999999999999999999999999999999999999995
No 34
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=3.7e-39 Score=340.91 Aligned_cols=254 Identities=25% Similarity=0.276 Sum_probs=174.3
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccccc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVV 182 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~ 182 (706)
.|+|||||||||++||+|.+.-... ...+ .....+... ..........+.|. .||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~-~~~~-----~~~~~~~~~----~~~~~~~~~~~~d~-~gHGT~vAgiia~~~~- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY-SKNL-----VPKGGYDGK----EAGETGDINDIVDK-LGHGTAVAGQIAANGN- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc-cccc-----ccCCCcCCc----cccccCCCCcCCCC-CCcHhHHHHHHhcCCC-
Confidence 4899999999999999998521110 0000 000000000 00000012344577 8999999999998732
Q ss_pred CCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCC-------ChhhHHHH
Q 036374 183 GASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIADGVDIILTGATYGFAFD-------FAEDAVAI 254 (706)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~-------~~~~~~~~ 254 (706)
..||||+|+|+.+|+++ ..+ ....+++++|++|++.+++|||||||...... .....+..
T Consensus 69 -----------~~GvAp~a~i~~~~v~~-~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~ 136 (294)
T cd07482 69 -----------IKGVAPGIGIVSYRVFG-SCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKK 136 (294)
T ss_pred -----------CceeCCCCEEEEEEeec-CCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHH
Confidence 16999999999999998 554 48889999999999999999999999852211 11234666
Q ss_pred HHHHHHhCCcEEEEecCCCCCCCCC----------------------cccCCCceEEEccccCCcceeeeEEeCCCeEEe
Q 036374 255 GAFHAMEKGILTAVPTGNMGPKPAS----------------------TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLV 312 (706)
Q Consensus 255 a~~~a~~~Gv~vV~AAGN~G~~~~~----------------------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 312 (706)
++..+.++|++||+||||+|..... .+...+++|+|||++
T Consensus 137 ~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~------------------ 198 (294)
T cd07482 137 AINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATD------------------ 198 (294)
T ss_pred HHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeC------------------
Confidence 7777888999999999999865311 122334444444433
Q ss_pred eeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCC
Q 036374 313 GDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHP 392 (706)
Q Consensus 313 g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 392 (706)
T Consensus 199 -------------------------------------------------------------------------------- 198 (294)
T cd07482 199 -------------------------------------------------------------------------------- 198 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCC
Q 036374 393 TPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWG 472 (706)
Q Consensus 393 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~ 472 (706)
..+.++.||++|+.. +|++|||+++.........
T Consensus 199 ---------------------------------------~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~ 232 (294)
T cd07482 199 ---------------------------------------NNGNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKE 232 (294)
T ss_pred ---------------------------------------CCCCcCccccCCCCc-------ceEECCCCCcccccccCcc
Confidence 224577899988754 4999999998532211100
Q ss_pred ---CCC------CCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHHhc
Q 036374 473 ---PSN------HPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP-SSIKSALMTT 524 (706)
Q Consensus 473 ---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp-~~ik~~L~~T 524 (706)
... .......+.|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 233 KWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 000 001123467899999999999999999999999999999 9999999986
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.9e-39 Score=324.72 Aligned_cols=222 Identities=19% Similarity=0.153 Sum_probs=172.9
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccccc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVV 182 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~ 182 (706)
||+|||||||||++||+|.+.-. .+..+.+++ +......+.|. .||||||||||++
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~-------------~~~~~~~~~------~~~~~~~~~d~-~gHGT~vAgiia~---- 56 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL-------------DGEVTIDLE------IIVVSAEGGDK-DGHGTACAGIIKK---- 56 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc-------------ccccccccc------cccCCCCCCCC-CCcHHHHHHHHHc----
Confidence 79999999999999999975311 111111100 01112345567 8999999999965
Q ss_pred CCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHhC
Q 036374 183 GASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEK 262 (706)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~ 262 (706)
.+|+++|+.+|+++....+..+++++||+|+++.|++|||||||.... .....+..++.++.++
T Consensus 57 --------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~--~~~~~~~~~~~~a~~~ 120 (222)
T cd07492 57 --------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD--RDFPLLKELLEYAYKA 120 (222)
T ss_pred --------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC--CcCHHHHHHHHHHHHC
Confidence 359999999999983333888899999999999999999999998722 2335667778888899
Q ss_pred CcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcc
Q 036374 263 GILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSEL 342 (706)
Q Consensus 263 Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~ 342 (706)
|+++|+||||++.... .+...+++|+|++.+.+.
T Consensus 121 g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~--------------------------------------------- 154 (222)
T cd07492 121 GGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD--------------------------------------------- 154 (222)
T ss_pred CCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC---------------------------------------------
Confidence 9999999999986543 366778899998765321
Q ss_pred cccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEE
Q 036374 343 ASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHI 422 (706)
Q Consensus 343 ~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i 422 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHH
Q 036374 423 LRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAA 502 (706)
Q Consensus 423 ~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 502 (706)
.. +.+++ ++|+.|||.+|+++.+. +.|..++|||||||+|||++
T Consensus 155 ------------~~---~~~~~--------~~~~~apg~~i~~~~~~-------------~~~~~~~GTS~Aap~vaG~~ 198 (222)
T cd07492 155 ------------PK---SFWYI--------YVEFSADGVDIIAPAPH-------------GRYLTVSGNSFAAPHVTGMV 198 (222)
T ss_pred ------------Cc---ccccC--------CceEEeCCCCeEeecCC-------------CCEEEeccHHHHHHHHHHHH
Confidence 00 11133 34999999999998773 46899999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHhccc
Q 036374 503 AYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 503 ALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
|||+|++|+|+++|||++|+.||+
T Consensus 199 All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 199 ALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=7.4e-38 Score=325.85 Aligned_cols=243 Identities=25% Similarity=0.272 Sum_probs=185.4
Q ss_pred CCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccc
Q 036374 100 VESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGN 179 (706)
Q Consensus 100 ~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~ 179 (706)
+|+||+|+|||+||+.+||+|.+......... ..++. ......|. .+|||||||||+|.
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~-----------~~~~~---------~~~~~~~~-~~HGT~vagiiag~ 59 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYV-----------AVNDA---------GYASNGDG-DSHGTHVAGVIAAA 59 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccccc-----------ccccc---------cCCCCCCC-CChHHHHHHHHhcC
Confidence 69999999999999999999986422110000 00000 01234566 89999999999998
Q ss_pred cccCCCcccCCCcceeeccCCCeEEEEEeecCCC--CCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCC-----------
Q 036374 180 LVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPW--PCNEADILAAFDDAIADGVDIILTGATYGFAFD----------- 246 (706)
Q Consensus 180 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~--g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~----------- 246 (706)
..+ ..+.|+||+|+|+.+|+++ .. .+....+.++++++++.+++|||||||......
T Consensus 60 ~~~---------~~~~GiAp~a~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~ 129 (267)
T cd04848 60 RDG---------GGMHGVAPDATLYSARASA-SAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAA 129 (267)
T ss_pred cCC---------CCcccCCcCCEEEEEeccC-CCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhcc
Confidence 532 2338999999999999998 44 366788899999999999999999999873221
Q ss_pred ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCc---------ccCCCceEEEccccCCcceeeeEEeCCCeEEeeeecc
Q 036374 247 FAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAST---------VVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVN 317 (706)
Q Consensus 247 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~ 317 (706)
.....+...+..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~-------------------- 189 (267)
T cd04848 130 TQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG-------------------- 189 (267)
T ss_pred ccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC--------------------
Confidence 1445667777788899999999999998654322 23457889998876542
Q ss_pred CCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccE
Q 036374 318 PFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPT 397 (706)
Q Consensus 318 ~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~ 397 (706)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccc--cCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCC
Q 036374 398 VILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHP--FSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSN 475 (706)
Q Consensus 398 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~ 475 (706)
.... ||++|+.. ..++++|||.+|+++.+..
T Consensus 190 -------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~----- 222 (267)
T cd04848 190 -------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG----- 222 (267)
T ss_pred -------------------------------------Ccccccccccchhh-----hhheeecCcCceeecccCC-----
Confidence 1222 47777644 1347999999999987631
Q ss_pred CCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 476 HPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 476 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 223 ------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 223 ------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 245889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=321.67 Aligned_cols=349 Identities=22% Similarity=0.297 Sum_probs=261.3
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccE------EEEecceeeEEEEEcC-----HHHHHHHhcCCCeeEE
Q 036374 3 VCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVL------VRSYERSFNGFAAKLT-----DEEQNRISRMDGIVSV 71 (706)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~y~~~~ng~s~~~~-----~~~~~~L~~~~~V~~v 71 (706)
.|||+++.... ...|...+.+.|.+..-..-+| -..|-.-|.-+-++-. .-++++|..+|.|+.+
T Consensus 51 EyIv~F~~y~~----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v 126 (1033)
T KOG4266|consen 51 EYIVRFKQYKP----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVV 126 (1033)
T ss_pred eeEEEeccccc----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCceee
Confidence 59999988665 4455555666665311111122 2334344444444332 2358899999999999
Q ss_pred Eccccccccc---------------------c--------------CCc----------cccCCccccccCCCCCCCcEE
Q 036374 72 FPSKTLQLQT---------------------T--------------RSW----------DFMGFPETVKREPTVESDMII 106 (706)
Q Consensus 72 ~~~~~~~~~~---------------------~--------------~s~----------~~ig~~~~~~~~~~~G~GVvV 106 (706)
.|.+.+..-. + .+. +.++++ -+|+.|++|++|+|
T Consensus 127 ~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad-~LWk~GyTGa~Vkv 205 (1033)
T KOG4266|consen 127 FPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGAD-HLWKKGYTGAKVKV 205 (1033)
T ss_pred cchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchh-hHHhccccCCceEE
Confidence 9987654210 0 000 113445 79999999999999
Q ss_pred EEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccCCCc
Q 036374 107 GVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASF 186 (706)
Q Consensus 107 gVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~~~~ 186 (706)
||.|||+..+||.|+.- .+ -..|.. . ..-.|. .||||.|||+|||..
T Consensus 206 AiFDTGl~~~HPHFrnv--KE-RTNWTN------------E-----------~tLdD~-lgHGTFVAGvia~~~------ 252 (1033)
T KOG4266|consen 206 AIFDTGLRADHPHFRNV--KE-RTNWTN------------E-----------DTLDDN-LGHGTFVAGVIAGRN------ 252 (1033)
T ss_pred EEeecccccCCccccch--hh-hcCCcC------------c-----------cccccC-cccceeEeeeeccch------
Confidence 99999999999999742 00 012211 1 122344 899999999999874
Q ss_pred ccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEE
Q 036374 187 DGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILT 266 (706)
Q Consensus 187 ~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~v 266 (706)
...|.||+++|+++|||.+..-..++.++.|+.+|+....||+|+|+|++ ++.+.|+-..+....+.++++
T Consensus 253 ------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP---DfmD~PFVeKVwEltAnNvIM 323 (1033)
T KOG4266|consen 253 ------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP---DFMDLPFVEKVWELTANNVIM 323 (1033)
T ss_pred ------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---ccccchHHHHHHhhccCcEEE
Confidence 23899999999999999833348899999999999999999999999998 567788888888889999999
Q ss_pred EEecCCCCCCCCCcccCCC--ceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccc
Q 036374 267 AVPTGNMGPKPASTVVVAP--WILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELAS 344 (706)
Q Consensus 267 V~AAGN~G~~~~~~~~~~p--~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 344 (706)
|.|+||+|+-.++..+++. .|+-||..+
T Consensus 324 vSAiGNDGPLYGTLNNPaDQsDViGVGGId-------------------------------------------------- 353 (1033)
T KOG4266|consen 324 VSAIGNDGPLYGTLNNPADQSDVIGVGGID-------------------------------------------------- 353 (1033)
T ss_pred EEecCCCCcceeecCCcccccceeeecccc--------------------------------------------------
Confidence 9999999998888777543 345554322
Q ss_pred cccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEee
Q 036374 345 RQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILR 424 (706)
Q Consensus 345 ~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~ 424 (706)
T Consensus 354 -------------------------------------------------------------------------------- 353 (1033)
T KOG4266|consen 354 -------------------------------------------------------------------------------- 353 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeecCCCCCcccccCCCCCCCC----CCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHH
Q 036374 425 SMAIKDDAAPVVHPFSGRGPSKI----TPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAG 500 (706)
Q Consensus 425 ~~~~~~~~~~~~a~fSS~GP~~~----~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG 500 (706)
..+.++.|||||-+.. ..||+||||++-|.+|....-. .+....||||.|+|.|||
T Consensus 354 -------fdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAG 413 (1033)
T KOG4266|consen 354 -------FDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAG 413 (1033)
T ss_pred -------ccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhc
Confidence 2267999999997653 5789999999999999866542 456789999999999999
Q ss_pred HHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 501 AAAYVRS----FHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 501 ~aALl~~----~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
+++||.+ +.--++|+.+|++|...|.+++. ..-+.||+|++|+.++.+
T Consensus 414 av~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg----~NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 414 AVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG----PNMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC----CchhhccCcchhHHHHHH
Confidence 9999965 34557999999999999999877 244789999999998876
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-35 Score=321.46 Aligned_cols=366 Identities=19% Similarity=0.229 Sum_probs=237.4
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHCCCcEEEEcccCCC
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEADILAAFDDAIADGVDIILTGATYGF 243 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~ai~~gv~VIN~SlG~~~ 243 (706)
.-|||||||||+|+..+... ..|+||+|+|+.+++.+..-| .+...+.+|+..+++.++||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 56999999999999865433 389999999999999873333 56677999999999999999999999885
Q ss_pred CCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCccc---CCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCC
Q 036374 244 AFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVV---VAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFT 320 (706)
Q Consensus 244 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (706)
..+.....++.+-..+.++|+++|+||||+||...+++. ..-.+|.|||.-......+.
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~------------------ 443 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE------------------ 443 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh------------------
Confidence 444444445555545567899999999999998777654 34578888886433211100
Q ss_pred CCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEe
Q 036374 321 MKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVIL 400 (706)
Q Consensus 321 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i 400 (706)
|.+.
T Consensus 444 -----y~~~----------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 444 -----YSVR----------------------------------------------------------------------- 447 (1304)
T ss_pred -----hhhh-----------------------------------------------------------------------
Confidence 0000
Q ss_pred chhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCC
Q 036374 401 KMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDH 480 (706)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~ 480 (706)
......+..+|||||+. ||.+--.|.|||+.|.+--.-.
T Consensus 448 -----------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~t---------- 486 (1304)
T KOG1114|consen 448 -----------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYT---------- 486 (1304)
T ss_pred -----------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCchhh----------
Confidence 01124578899999999 9999999999999987642211
Q ss_pred cccceeEeccccchhHHHHHHHHHHH----hhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCCcCcc
Q 036374 481 RFVKYNILSGTSIASAFAAGAAAYVR----SFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNPGLV 556 (706)
Q Consensus 481 ~~~~y~~~sGTSmAaP~VAG~aALl~----~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv 556 (706)
-..-..|.|||||+|+++|++|||+ +.+-.|||..||.+|++||+++.+ ..+|.+|.|+|++++|.+- |.
T Consensus 487 -lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~----id~faqG~GmlqVdkAyEy-L~ 560 (1304)
T KOG1114|consen 487 -LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD----IDSFAQGQGMLQVDKAYEY-LA 560 (1304)
T ss_pred -hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc----cchhccCcceeehhHHHHH-HH
Confidence 2346789999999999999999995 567899999999999999999987 4789999999999999763 11
Q ss_pred -cccChhhHHhhh-ccCCCC-cccEEEecCCCCCCCCCCCCCCCCCCC-CeEEEEeecCCCceEEEEEEEEeccCCCeeE
Q 036374 557 -YEVLEGDYIKML-CGMGYS-VNKIRLISGDNSSCPEGTSIATKDLNL-PSIAAQVEVHNPFSIKFLRTVTNVGLANTTY 632 (706)
Q Consensus 557 -~~~~~~~~~~~l-c~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lN~-psi~~~~~~~~~~~~~~~rtv~n~g~~~~ty 632 (706)
.+.....-+.|+ ...|.+ +. .++.+++..|..+. -..++. |-|.-+ ..|- .....|
T Consensus 561 q~~~~f~~~l~f~~v~VgN~~sr--GIyLRep~~~~~p~---e~~i~VePiF~~~--------------~e~~-keki~F 620 (1304)
T KOG1114|consen 561 QSDFSFPNALGFINVNVGNSCSR--GIYLREPTQVCSPS---EHTIGVEPIFENG--------------EENE-KEKISF 620 (1304)
T ss_pred HhhhcCCccceeEEEeecccccc--ceEecCCcccCCcc---ccceeccccccCc--------------cccc-cccccc
Confidence 111222223331 001111 11 11122222221100 000100 111000 0010 001112
Q ss_pred EEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEEc-----CCceEEeeEEEEEecccc
Q 036374 633 KAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWSD-----GTHNVRSPIVVYTNQEFA 704 (706)
Q Consensus 633 ~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~-----~~~~v~~P~~~~~~~~~~ 704 (706)
.+.+.- -.--.|.-.|+.|.+ .++.+.+.|+|+++....+ ..++.|.=-| .+..+|+|+.|...+..+
T Consensus 621 e~~L~L-~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~l~~G-~hy~eV~gyD~~~p~~gplFrIPVTVi~P~~v~ 693 (1304)
T KOG1114|consen 621 EVQLSL-ASTQPWVQCPEYLML--ANQGRGINVRVDPTGLAPG-VHYTEVLGYDTANPSRGPLFRIPVTVIKPKVVA 693 (1304)
T ss_pred eeeEee-ecCCcceeCchhhee--ccCCceeEEEECCcCCCCC-cceEEEEEeecCCcccCceEEeeeEEEcccccc
Confidence 111111 111124445888877 6889999999999875544 4666665533 468899999987655433
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.6e-34 Score=289.16 Aligned_cols=193 Identities=17% Similarity=0.161 Sum_probs=142.9
Q ss_pred cccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHH--HHCCCcEEEEc
Q 036374 161 TREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDA--IADGVDIILTG 238 (706)
Q Consensus 161 ~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a--i~~gv~VIN~S 238 (706)
..|. +||||||||||||. .|++|+++|+..++.. . ....+.++++|+ .+.+++|||||
T Consensus 33 ~~~~-~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-~---~~~~~~~~i~~~~~~~~gv~VINmS 92 (247)
T cd07488 33 NNTF-DDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-K---SNNGQWQECLEAQQNGNNVKIINHS 92 (247)
T ss_pred CCCC-CCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-C---CCCccHHHHHHHHHhcCCceEEEeC
Confidence 3466 99999999999987 5677999998755533 1 233456777787 66899999999
Q ss_pred ccCCCCCC-----ChhhHHHHHHHHHHhC-CcEEEEecCCCCCCCC-----CcccCCCceEEEccccCCcceeeeEEeCC
Q 036374 239 ATYGFAFD-----FAEDAVAIGAFHAMEK-GILTAVPTGNMGPKPA-----STVVVAPWILTVAGSSIDRPFIDKAILGD 307 (706)
Q Consensus 239 lG~~~~~~-----~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~-----~~~~~~p~vitVga~~~~~~~~~~~~~~~ 307 (706)
||...... +..+.+..+++.+.++ |+++|+||||+|.... ..+..++++|+|||++.+...
T Consensus 93 ~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~-------- 164 (247)
T cd07488 93 YGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR-------- 164 (247)
T ss_pred CccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc--------
Confidence 99873332 2334566777776666 9999999999997531 234467889999998654210
Q ss_pred CeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCC
Q 036374 308 GTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPAST 387 (706)
Q Consensus 308 ~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~ 387 (706)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCC--CCCCCCCCCCCCceEecCCcEEe
Q 036374 388 IMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGR--GPSKITPDIIKPDISAPAVQILA 465 (706)
Q Consensus 388 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~--GP~~~~~~~~KPDi~APG~~I~s 465 (706)
...+.||++ +|+. ++..||||+|||++|++
T Consensus 165 ----------------------------------------------~~~s~~sn~~~~~~~--~~~~~~di~APG~~i~s 196 (247)
T cd07488 165 ----------------------------------------------FFASDVSNAGSEINS--YGRRKVLIVAPGSNYNL 196 (247)
T ss_pred ----------------------------------------------ceecccccccCCCCC--CCCceeEEEEeeeeEEC
Confidence 113445554 4554 78899999999999998
Q ss_pred cccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 036374 466 AYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP------SSIKSALMTT 524 (706)
Q Consensus 466 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp------~~ik~~L~~T 524 (706)
+ .+.|..++|||||||||||++|||++++|++.+ -++|.+|+.|
T Consensus 197 --~-------------~~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 197 --P-------------DGKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred --C-------------CCceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 2 245889999999999999999999999887764 4566666655
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=5.2e-31 Score=268.75 Aligned_cols=234 Identities=31% Similarity=0.406 Sum_probs=176.1
Q ss_pred cEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccC
Q 036374 104 MIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVG 183 (706)
Q Consensus 104 VvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~ 183 (706)
|+|+|||+|++++||+|... .. ....+.++..+.. ......|. .+||||||++|++.....
T Consensus 1 v~VaiiD~G~~~~~~~~~~~---------~~-~~~~~~~~~~~~~--------~~~~~~~~-~~HGt~va~~i~~~~~~~ 61 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGL---------FG-GGDGGNDDDDNEN--------GPTDPDDG-NGHGTHVAGIIAASANNG 61 (241)
T ss_pred CEEEEEeCCCCCCCcchhcc---------cc-CcccccccccCcC--------CCCCCCCC-CCcHHHHHHHHhcCCCCC
Confidence 68999999999999987210 00 1111111111100 00233456 899999999999885322
Q ss_pred CCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHH-HCCCcEEEEcccCCCCCCChhhHHHHHHHHHHh
Q 036374 184 ASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAI-ADGVDIILTGATYGFAFDFAEDAVAIGAFHAME 261 (706)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai-~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~ 261 (706)
. ..|+||+++|+.+|+.. ..+ .....+++++++++ ..+++|||||||..... ....+...+..+.+
T Consensus 62 ~---------~~g~a~~a~i~~~~~~~-~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~~~~~ 129 (241)
T cd00306 62 G---------GVGVAPGAKLIPVKVLD-GDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAIDYALA 129 (241)
T ss_pred C---------CEEeCCCCEEEEEEEec-CCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHHHHHH
Confidence 1 17999999999999998 433 67888999999999 89999999999998322 34566777777877
Q ss_pred C-CcEEEEecCCCCCCCC---CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCC
Q 036374 262 K-GILTAVPTGNMGPKPA---STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASY 337 (706)
Q Consensus 262 ~-Gv~vV~AAGN~G~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~ 337 (706)
+ |+++|+|+||.+.... ..+...+++|+||+.+.+.
T Consensus 130 ~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------------------------------- 169 (241)
T cd00306 130 KLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------------------------------- 169 (241)
T ss_pred hcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------------------------------
Confidence 7 9999999999998765 4667889999999976542
Q ss_pred CCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCC
Q 036374 338 PCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEK 417 (706)
Q Consensus 338 ~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 417 (706)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeeeeeecCCCCCccc-ccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhH
Q 036374 418 PQVHILRSMAIKDDAAPVVH-PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASA 496 (706)
Q Consensus 418 ~~~~i~~~~~~~~~~~~~~a-~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 496 (706)
... .++++|+ |||+.|||.++...... ....+..++|||||||
T Consensus 170 -----------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap 213 (241)
T cd00306 170 -----------------TPASPSSNGGA--------GVDIAAPGGDILSSPTT-----------GGGGYATLSGTSMAAP 213 (241)
T ss_pred -----------------CccCCcCCCCC--------CceEEeCcCCccCcccC-----------CCCCeEeeccHHHHHH
Confidence 111 3444444 66999999999875111 1356899999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 036374 497 FAAGAAAYVRSFHPDWSPSSIKSALMTT 524 (706)
Q Consensus 497 ~VAG~aALl~~~~P~lsp~~ik~~L~~T 524 (706)
+|||++||++|++|++++.++|++|+.|
T Consensus 214 ~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 214 IVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 9999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.5e-23 Score=237.10 Aligned_cols=269 Identities=25% Similarity=0.324 Sum_probs=196.4
Q ss_pred ccccC--CCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCC--cccccCCC
Q 036374 93 TVKRE--PTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINT--TREYQLGH 168 (706)
Q Consensus 93 ~~~~~--~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~--~~D~~~gH 168 (706)
..|.. +.+|+||+|+|||+||+..||+|.+.... +.+|... ... ..|. .+|
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~-------------~~~~~~~-----------~~~~~~~d~-~~h 185 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA-------------GGDFVDG-----------DPEPPFLDD-NGH 185 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhccccc-------------ccccccC-----------CCCCCCCCC-CCC
Confidence 67887 89999999999999999999999753211 1122111 122 3577 899
Q ss_pred cccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCC-C-CCHHHHHHHHHHHHHCC--CcEEEEcccCCCC
Q 036374 169 GTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPW-P-CNEADILAAFDDAIADG--VDIILTGATYGFA 244 (706)
Q Consensus 169 GThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g-~~~~~i~~ai~~ai~~g--v~VIN~SlG~~~~ 244 (706)
||||++++++.... ......|+||+++++.+|++. .. + ....+++++++++++.+ +++||||+|.. .
T Consensus 186 Gt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~-~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~ 256 (508)
T COG1404 186 GTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLG-SGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-L 256 (508)
T ss_pred cceeeeeeeeeccc-------CCCccccccCCCcEEEEEecc-CCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-c
Confidence 99999999984211 011238999999999999998 43 4 67778899999999999 99999999986 2
Q ss_pred CCChhhHHHHHHHHHHhCC-cEEEEecCCCCCCCCC----cccCC--CceEEEccccCCcceeeeEEeCCCeEEeeeecc
Q 036374 245 FDFAEDAVAIGAFHAMEKG-ILTAVPTGNMGPKPAS----TVVVA--PWILTVAGSSIDRPFIDKAILGDGTTLVGDAVN 317 (706)
Q Consensus 245 ~~~~~~~~~~a~~~a~~~G-v~vV~AAGN~G~~~~~----~~~~~--p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~ 317 (706)
.......+..++..+...| +++|+++||.+..... .+... +.+++||+.+.
T Consensus 257 ~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------------------- 314 (508)
T COG1404 257 SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------------------- 314 (508)
T ss_pred cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC----------------------
Confidence 3334456666777777777 9999999999876521 11211 35566655432
Q ss_pred CCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccE
Q 036374 318 PFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPT 397 (706)
Q Consensus 318 ~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~ 397 (706)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEe-----cccCCCC
Q 036374 398 VILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILA-----AYTGGWG 472 (706)
Q Consensus 398 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~s-----a~~~~~~ 472 (706)
.+.++.||++|+.. ..+++|||.+|.+ .++..
T Consensus 315 -----------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~-- 351 (508)
T COG1404 315 -----------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGD-- 351 (508)
T ss_pred -----------------------------------CCccccccccCCCC------CcceeCCCccccccccceeeeCC--
Confidence 14578899999751 2399999999998 33321
Q ss_pred CCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccC
Q 036374 473 PSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHP-DWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKAT 551 (706)
Q Consensus 473 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al 551 (706)
...|..++|||||+|||+|++||+++.+| .+++.+++..+..++.. .. .......++.|..+...+.
T Consensus 352 ---------~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~ 419 (508)
T COG1404 352 ---------GADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-TP--LSGVDNLVGGGLANLDAAA 419 (508)
T ss_pred ---------ccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-cc--CCccccccccCcccccccc
Confidence 02499999999999999999999999999 89999999999888874 11 1234556777766665554
Q ss_pred C
Q 036374 552 N 552 (706)
Q Consensus 552 ~ 552 (706)
.
T Consensus 420 ~ 420 (508)
T COG1404 420 T 420 (508)
T ss_pred c
Confidence 4
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.5e-20 Score=185.34 Aligned_cols=171 Identities=13% Similarity=0.171 Sum_probs=112.4
Q ss_pred ccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccc
Q 036374 93 TVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHM 172 (706)
Q Consensus 93 ~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThV 172 (706)
.+|..+++|++|.+||+|.||||-|||+..+ | ..+..++|..|+..+..++. .|.-+.|||.|
T Consensus 152 ~awa~g~tgknvttaimddgvdymhpdlk~n--------y---naeasydfssndpfpypryt------ddwfnshgtrc 214 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTAIMDDGVDYMHPDLKSN--------Y---NAEASYDFSSNDPFPYPRYT------DDWFNSHGTRC 214 (629)
T ss_pred HHHhhcccCCCceEEeecCCchhcCcchhcc--------c---CceeecccccCCCCCCCccc------chhhhccCccc
Confidence 8999999999999999999999999999742 2 34566777666643322221 12127899999
Q ss_pred eeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH-CCCcEEEEcccCCCCCCChhhH
Q 036374 173 ASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA-DGVDIILTGATYGFAFDFAEDA 251 (706)
Q Consensus 173 Agi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~-~gv~VIN~SlG~~~~~~~~~~~ 251 (706)
||-+++...++.. | .|||.+.++..+|+++ . ..-.|+++|-...-+ ...+|.+.|||........+.|
T Consensus 215 agev~aardngic--g------vgvaydskvagirmld-q--pymtdlieansmghep~kihiysaswgptddgktvdgp 283 (629)
T KOG3526|consen 215 AGEVVAARDNGIC--G------VGVAYDSKVAGIRMLD-Q--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGP 283 (629)
T ss_pred cceeeeeccCCce--e------eeeeeccccceeeecC-C--chhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCc
Confidence 9998887655433 2 8999999999999998 2 334455554322211 3568999999987433222333
Q ss_pred ---HHHHHHHHHh-----CCcEEEEecCCCCCCCC-Ccc--cCCCceEEEc
Q 036374 252 ---VAIGAFHAME-----KGILTAVPTGNMGPKPA-STV--VVAPWILTVA 291 (706)
Q Consensus 252 ---~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~-~~~--~~~p~vitVg 291 (706)
..+++.+-++ .|-++|.|+|..|.+.. ... ..+-|.|++-
T Consensus 284 rnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisin 334 (629)
T KOG3526|consen 284 RNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISIN 334 (629)
T ss_pred hhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEee
Confidence 2233333333 46799999999875432 222 2345556553
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.73 E-value=3.9e-17 Score=176.93 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=81.3
Q ss_pred cceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHC---CCcEEEEcccCCCCCC--ChhhHHHHHHHHHHhCCcEE
Q 036374 192 GNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIAD---GVDIILTGATYGFAFD--FAEDAVAIGAFHAMEKGILT 266 (706)
Q Consensus 192 g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~---gv~VIN~SlG~~~~~~--~~~~~~~~a~~~a~~~Gv~v 266 (706)
..+.||||+|+|+.|++++ . ....++.++.+++.+ +++|||+|||...... .+...+..++.+|.++||+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~-~---~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitv 156 (361)
T cd04056 81 EYAGAIAPGANITLYFAPG-T---VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITV 156 (361)
T ss_pred HHHHhccCCCeEEEEEECC-c---CccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEE
Confidence 4459999999999999987 2 245678889999887 9999999999973221 13356777778888999999
Q ss_pred EEecCCCCCCCC-----------CcccCCCceEEEccccCCc
Q 036374 267 AVPTGNMGPKPA-----------STVVVAPWILTVAGSSIDR 297 (706)
Q Consensus 267 V~AAGN~G~~~~-----------~~~~~~p~vitVga~~~~~ 297 (706)
|+|+||+|.... ..+...|||++||+++...
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999997653 2456889999999998764
No 44
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.92 E-value=1.5e-09 Score=91.51 Aligned_cols=78 Identities=28% Similarity=0.347 Sum_probs=57.6
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHhccCc----ccCCccEEEEecceeeEEEEEcCHHHHHHHhcCCCeeEEEcccccc
Q 036374 3 VCIVYMGSLPAGEYSPLAHHLSVLQEGIQD----SLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKTLQ 78 (706)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~v~~~~~~~ 78 (706)
+|||.|+++.........|.+++.+.+.+. .....++.+.|+..||||+++++++++++|+++|+|++|+|++.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 699999998663333566666665443321 3457899999999999999999999999999999999999999887
Q ss_pred cc
Q 036374 79 LQ 80 (706)
Q Consensus 79 ~~ 80 (706)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.85 E-value=1.3e-08 Score=93.48 Aligned_cols=113 Identities=32% Similarity=0.505 Sum_probs=88.0
Q ss_pred EEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeec------ccchheeec
Q 036374 303 AILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNF------RGDVETFRV 376 (706)
Q Consensus 303 ~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~------~k~~~~~~~ 376 (706)
++++|++++.|++++.... ..+++++..... .......|.+......+++||||||++. +|..+++++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~----~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~ 75 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS----GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAA 75 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC----CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHc
Confidence 6789999999999997554 456777633211 2344578998888889999999999872 467788999
Q ss_pred CceEEEecC-CCC----CCCCcCccEEEechhhHHHHHHHHhcCCCcEEE
Q 036374 377 GALGSIQPA-STI----MSHPTPFPTVILKMEDFERVKLYINSTEKPQVH 421 (706)
Q Consensus 377 Ga~g~i~~~-~~~----~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 421 (706)
||.|+|+++ ... ......+|++.|..++++.|++|++++..++++
T Consensus 76 GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 76 GGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999998 322 122468999999999999999999988776654
No 46
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.80 E-value=1.9e-08 Score=94.38 Aligned_cols=107 Identities=23% Similarity=0.276 Sum_probs=79.4
Q ss_pred CceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC-C----CC
Q 036374 323 GNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI-M----SH 391 (706)
Q Consensus 323 ~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~-~----~~ 391 (706)
....++++.+.. ....+...+++|||+||+| .+|..+++++||.|+|++| ... . ..
T Consensus 25 ~~~~~lv~~g~g-------------~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~ 91 (143)
T cd02133 25 GKTYELVDAGLG-------------TPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE 91 (143)
T ss_pred CcEEEEEEccCC-------------chhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC
Confidence 456788886533 3334445689999999997 4688999999999999999 322 1 11
Q ss_pred CcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCC
Q 036374 392 PTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSK 446 (706)
Q Consensus 392 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~ 446 (706)
...+|++.|+.++++.|.+++++ ..++++ ..+.. ..+.+.++.||||||+.
T Consensus 92 ~~~iP~v~Is~~dG~~L~~~l~~--~~~i~~-~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 92 AVFIPVVFISKEDGEALKAALES--SKKLTF-NTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCeEeEEEecHHHHHHHHHHHhC--CCeEEE-Eeccc-cccCCccccccCcCCCC
Confidence 24689999999999999999988 444443 33333 46778899999999964
No 47
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.56 E-value=1.3e-06 Score=78.29 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=61.4
Q ss_pred EEEEeecCCCceEEEEEEEEeccCCCeeEEEEEe-ec--------------Cc--ce-EEEEEcCeEEEeeCCcEEEEEE
Q 036374 604 IAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVK-TT--------------SI--DV-KINVTPDALSFESVNDKKSFVV 665 (706)
Q Consensus 604 i~~~~~~~~~~~~~~~rtv~n~g~~~~ty~~~~~-~~--------------~~--g~-~v~v~p~~~~~~~~g~~~~~~v 665 (706)
|++.... ...+++.+|+|.|+...+|+++.. .. +. .. .+...|.+|++ ++|++++++|
T Consensus 1 i~L~d~~---~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~v 76 (112)
T PF06280_consen 1 ISLKDTG---NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTV 76 (112)
T ss_dssp EEEEEE----SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEE
T ss_pred CCccccC---CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEE
Confidence 3455663 268999999999999999999766 11 11 11 67788899999 8999999999
Q ss_pred EEEecc---cCCCceEEEEEEEEc-CCc-eEEeeEE
Q 036374 666 TVDGAI---LQANHTVSASLLWSD-GTH-NVRSPIV 696 (706)
Q Consensus 666 t~~~~~---~~~~~~~~G~i~~~~-~~~-~v~~P~~ 696 (706)
+++.+. .+...+++|+|.+++ ..+ .+++||+
T Consensus 77 ti~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 77 TITPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp EEE--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EEEehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 999955 245789999999986 344 8999996
No 48
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=5.9e-06 Score=97.73 Aligned_cols=163 Identities=16% Similarity=0.110 Sum_probs=88.5
Q ss_pred ccccCCCCCCCcEEEEEc-cccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCccc
Q 036374 93 TVKREPTVESDMIIGVLD-NGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTH 171 (706)
Q Consensus 93 ~~~~~~~~G~GVvVgVID-tGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGTh 171 (706)
.+++.+.+|+|+.||||| -|-.+..-|+.- -|+. .|-....+.++. + .+ -. .+|+||
T Consensus 219 ~l~~~g~tGkG~tIaIid~yG~p~~~~dl~~--------Fd~~----~Gip~~~~~~V~----~----ig-~g-~~~~~~ 276 (1174)
T COG4934 219 ALYESGATGKGETIAIIDAYGDPYNNQDLYS--------FDQQ----YGIPNPILSRVT----Y----IG-PG-IGSGTG 276 (1174)
T ss_pred ecccCCCCCCCcEEEEEeccCCcccHHHHHH--------HHHh----hCCCCCCceEEE----E----eC-CC-CCCCCC
Confidence 456668899999999999 665544444321 1111 110001111111 0 00 11 578887
Q ss_pred ceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCC-cEEEEcccCC--CCCCC-
Q 036374 172 MASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGV-DIILTGATYG--FAFDF- 247 (706)
Q Consensus 172 VAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv-~VIN~SlG~~--~~~~~- 247 (706)
=+.-+ -++..-..-+||+|+|..+-.-. .....+..|+.+-...=+ -+|-.||+.. ....+
T Consensus 277 g~~E~-----------sLDVE~s~A~AP~A~I~lvvap~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~ 341 (1174)
T COG4934 277 GAEET-----------SLDVEWSHAMAPKANIDLVVAPN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISP 341 (1174)
T ss_pred ccccc-----------eeehhhhhccCccCceEEEEcCC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCCh
Confidence 66411 12333347799999999886522 122222233322221111 3333566543 12222
Q ss_pred -hhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------cccCCCceEEEcc
Q 036374 248 -AEDAVAIGAFHAMEKGILTAVPTGNMGPKPAS--------TVVVAPWILTVAG 292 (706)
Q Consensus 248 -~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------~~~~~p~vitVga 292 (706)
.-+.+......|.++|+.+++|+|.+|....+ .++.+|++++||.
T Consensus 342 ~~~~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 342 GYADLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 23344555556778999999999999866532 3457899999998
No 49
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.4e-06 Score=91.20 Aligned_cols=160 Identities=14% Similarity=0.065 Sum_probs=96.6
Q ss_pred cCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCC
Q 036374 88 MGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLG 167 (706)
Q Consensus 88 ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~g 167 (706)
+.+. .+|..+++|.++.|+|.|+|++..||+..+. +.+. ..+++..+.. ....-.+.... ..
T Consensus 20 ~~v~-~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~~~~----------~s~d~~~~~~-----~p~~~~~~~~~-~~ 81 (431)
T KOG3525|consen 20 LNVQ-NAWCKGYTGTRVSVTILDDGLECSHPDLRNN-YDPL----------GSYDVNRHDN-----DPEPRCDGTNE-NK 81 (431)
T ss_pred ceee-eccccCCCCCceEEEEeeccccccCcccccc-cCcc----------eeEeeecCCC-----CcccccCCCCc-cc
Confidence 4455 8999999999999999999999999999742 2211 1111111110 00001122234 78
Q ss_pred CcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH-CCCcEEEEcccCCCCCC
Q 036374 168 HGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA-DGVDIILTGATYGFAFD 246 (706)
Q Consensus 168 HGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~-~gv~VIN~SlG~~~~~~ 246 (706)
|||-||+-.+....... -..|+++++++..++++. +...+...+...... .-.++-..|||......
T Consensus 82 ~g~~Ca~~~a~~~~~~~--------C~vg~~~~~~~~g~~~l~----~~v~~~~~~~~~~~~~~~~di~scsw~pddd~~ 149 (431)
T KOG3525|consen 82 HGTRCAGCVAARANNLT--------CGVGVAYNATIGGIRMLA----GCVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGK 149 (431)
T ss_pred cCCCCCcccccccCCCc--------CCCCcccCccccceeeee----eecccceecccccCCCCCceeecCcCCcccCCC
Confidence 99999999998852211 228999999999999987 112222222222222 34688888999763221
Q ss_pred Chhh---HHHHHHHHH-----HhCCcEEEEecCCCCCCC
Q 036374 247 FAED---AVAIGAFHA-----MEKGILTAVPTGNMGPKP 277 (706)
Q Consensus 247 ~~~~---~~~~a~~~a-----~~~Gv~vV~AAGN~G~~~ 277 (706)
.... ....+...+ ..+|-+.|++.||.|...
T Consensus 150 t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 150 TCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred cCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 1111 122233332 246889999999987654
No 50
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.04 E-value=1.2e-05 Score=73.35 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=63.9
Q ss_pred ccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC------CC---CCcCccEEEechhhHHHH
Q 036374 344 SRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI------MS---HPTPFPTVILKMEDFERV 408 (706)
Q Consensus 344 ~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~------~~---~~~~~p~~~i~~~~~~~l 408 (706)
...|.+..+...+++|||+||+| .+|..+++++||.++|++| ... .. ....+|+++|+.++++.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 47898887777899999999998 4688999999999999999 321 11 234689999999999999
Q ss_pred HHHHhcCCCcEEE
Q 036374 409 KLYINSTEKPQVH 421 (706)
Q Consensus 409 ~~~~~~~~~~~~~ 421 (706)
.+++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999888765554
No 51
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.86 E-value=3.2e-05 Score=71.76 Aligned_cols=80 Identities=8% Similarity=-0.130 Sum_probs=65.5
Q ss_pred cccccCCCCC--CCCcccccEEEEee-----cccchheeecCceEEEecC-CC-C-----C--CCCcCccEEEechhhHH
Q 036374 343 ASRQCSLFCL--DENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-ST-I-----M--SHPTPFPTVILKMEDFE 406 (706)
Q Consensus 343 ~~~~c~~~~~--~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~-~-----~--~~~~~~p~~~i~~~~~~ 406 (706)
....|.+... ...++.|+|+|++| .+|..+++++||.++|+|| .+ . + .....+|+++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578988776 56789999999999 4889999999999999999 33 1 1 12346899999999999
Q ss_pred HHHHHHhcCCCcEEEE
Q 036374 407 RVKLYINSTEKPQVHI 422 (706)
Q Consensus 407 ~l~~~~~~~~~~~~~i 422 (706)
.|+..+..+.+.+++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999888777654
No 52
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=97.82 E-value=9.4e-05 Score=67.41 Aligned_cols=76 Identities=17% Similarity=0.089 Sum_probs=60.9
Q ss_pred cccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-C-CC-C------CCCcCccEEEechhhHHHHHH
Q 036374 345 RQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-S-TI-M------SHPTPFPTVILKMEDFERVKL 410 (706)
Q Consensus 345 ~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~-~~-~------~~~~~~p~~~i~~~~~~~l~~ 410 (706)
..|.+..+ +.+++|||+|++| .+|..+++++||.++|+|| . .. . .+...+|++.|+.++++.|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46776444 3579999999998 4789999999999999999 3 22 1 123568999999999999999
Q ss_pred HHhcCCCcEEE
Q 036374 411 YINSTEKPQVH 421 (706)
Q Consensus 411 ~~~~~~~~~~~ 421 (706)
.+..+.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99988876664
No 53
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=97.80 E-value=3.6e-05 Score=69.68 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=62.5
Q ss_pred ccccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CC-C--C-----CCCcCccEEEechhhHHH
Q 036374 342 LASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-ST-I--M-----SHPTPFPTVILKMEDFER 407 (706)
Q Consensus 342 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~-~--~-----~~~~~~p~~~i~~~~~~~ 407 (706)
.....|.+.... .+++|||+||+| .+|..+++++||.|+|+++ .. . . .....+|+++|+.+++..
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 345679887764 459999999987 3688899999999999998 22 1 1 123569999999999999
Q ss_pred HHHHHhcCCCcEEE
Q 036374 408 VKLYINSTEKPQVH 421 (706)
Q Consensus 408 l~~~~~~~~~~~~~ 421 (706)
|+.|++.+...+++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999987766554
No 54
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=97.79 E-value=1.8e-05 Score=69.33 Aligned_cols=70 Identities=27% Similarity=0.319 Sum_probs=57.3
Q ss_pred cccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CC--------CCCCCcCccEEEechhhHHHH
Q 036374 343 ASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-ST--------IMSHPTPFPTVILKMEDFERV 408 (706)
Q Consensus 343 ~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~--------~~~~~~~~p~~~i~~~~~~~l 408 (706)
....|.+......+++||||||+| .+|..+++++||.|+|++| .. .......+|+++|+.++++.|
T Consensus 18 ~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 18 DEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp ECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred CcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 345677788888999999999998 4789999999999999999 11 134567899999999999999
Q ss_pred HHHH
Q 036374 409 KLYI 412 (706)
Q Consensus 409 ~~~~ 412 (706)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9985
No 55
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.77 E-value=0.00012 Score=67.17 Aligned_cols=79 Identities=16% Similarity=0.058 Sum_probs=61.2
Q ss_pred ccccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC-----CCCCcCccEEEechhhHHHHHH
Q 036374 342 LASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI-----MSHPTPFPTVILKMEDFERVKL 410 (706)
Q Consensus 342 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~-----~~~~~~~p~~~i~~~~~~~l~~ 410 (706)
....+|.+.+.+..+++|||+|++| .+|..+++++||.++|+|| .+. ..+...+|.+.+ .++|+.|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 4557899876666689999999999 4889999999999999998 322 123334565666 999999999
Q ss_pred HHhcCCCcEEE
Q 036374 411 YINSTEKPQVH 421 (706)
Q Consensus 411 ~~~~~~~~~~~ 421 (706)
.+..+...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99887665554
No 56
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.74 E-value=5.3e-05 Score=69.16 Aligned_cols=79 Identities=22% Similarity=0.154 Sum_probs=62.7
Q ss_pred cccccCCCC--CCCCcccccEEEEee-----cccchheeecCceEEEecC-CC---CC-------CCCcCccEEEechhh
Q 036374 343 ASRQCSLFC--LDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-ST---IM-------SHPTPFPTVILKMED 404 (706)
Q Consensus 343 ~~~~c~~~~--~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~---~~-------~~~~~~p~~~i~~~~ 404 (706)
....|.+.. +...+++|||+||++ .+|..+++++||.|+|+++ .. .. .....+|++.|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 446687766 667889999999987 3688999999999999998 22 11 134579999999999
Q ss_pred HHHHHHHHhcCCCcEEE
Q 036374 405 FERVKLYINSTEKPQVH 421 (706)
Q Consensus 405 ~~~l~~~~~~~~~~~~~ 421 (706)
+..|..++.++.+.+++
T Consensus 109 g~~l~~~~~~~~~v~~~ 125 (126)
T cd00538 109 GEALLSLLEAGKTVTVD 125 (126)
T ss_pred HHHHHHHHhcCCceEEe
Confidence 99999999887665543
No 57
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.68 E-value=9.5e-05 Score=66.72 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=62.8
Q ss_pred ccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC-----C-------CCCcCccEEEechhhH
Q 036374 344 SRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI-----M-------SHPTPFPTVILKMEDF 405 (706)
Q Consensus 344 ~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~-----~-------~~~~~~p~~~i~~~~~ 405 (706)
...|.+.. ...+++|+|+|++| .+|..+++++||.++|+|| ... + .....+|+++|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 46798643 35679999999999 5889999999999999999 221 1 1234789999999999
Q ss_pred HHHHHHHhcCCCcEEEE
Q 036374 406 ERVKLYINSTEKPQVHI 422 (706)
Q Consensus 406 ~~l~~~~~~~~~~~~~i 422 (706)
+.|+..+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999888776654
No 58
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.62 E-value=9.5e-05 Score=67.68 Aligned_cols=76 Identities=24% Similarity=0.317 Sum_probs=60.5
Q ss_pred ccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC-------C---------CCCcCccEEEec
Q 036374 344 SRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI-------M---------SHPTPFPTVILK 401 (706)
Q Consensus 344 ~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~-------~---------~~~~~~p~~~i~ 401 (706)
...|.+... ..+++|||+|++| .+|..+++++||.++|++| .++ . .+...+|+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467986543 5578999999999 5889999999999999997 221 0 124578999999
Q ss_pred hhhHHHHHHHHhcCCCcEE
Q 036374 402 MEDFERVKLYINSTEKPQV 420 (706)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~ 420 (706)
..+|+.|+..+......++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999987765554
No 59
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.60 E-value=9.9e-05 Score=66.34 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=61.1
Q ss_pred ccccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC--C------CCCcCccEEEechhhHHH
Q 036374 342 LASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI--M------SHPTPFPTVILKMEDFER 407 (706)
Q Consensus 342 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~--~------~~~~~~p~~~i~~~~~~~ 407 (706)
+...+|.+......+++|||+|++| .+|..+++++||.++|++| ... . .....+|+++|+.++|+.
T Consensus 28 ~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~ 107 (120)
T cd02129 28 TSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLD 107 (120)
T ss_pred CCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHH
Confidence 3457899888877889999999999 5899999999999999999 321 1 134568999999999999
Q ss_pred HHHHHhcC
Q 036374 408 VKLYINST 415 (706)
Q Consensus 408 l~~~~~~~ 415 (706)
|.+.+...
T Consensus 108 i~~~l~~~ 115 (120)
T cd02129 108 IQQTFGDS 115 (120)
T ss_pred HHHHhccC
Confidence 99988743
No 60
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.45 E-value=0.00022 Score=66.40 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=60.1
Q ss_pred ccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC---CC-------CCcCccEEEechhhHHH
Q 036374 344 SRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI---MS-------HPTPFPTVILKMEDFER 407 (706)
Q Consensus 344 ~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~---~~-------~~~~~p~~~i~~~~~~~ 407 (706)
.+.|.+.. .+++|||+|++| .+|..+++++||.++|+|| .+. +. ....+|+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 378999999999 5899999999999999998 321 10 13578999999999999
Q ss_pred HHHHHhcCCCcEE
Q 036374 408 VKLYINSTEKPQV 420 (706)
Q Consensus 408 l~~~~~~~~~~~~ 420 (706)
|+..+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988776554
No 61
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.35 E-value=0.00028 Score=63.59 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=57.7
Q ss_pred ccccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC-----C-----CCCcCccEEEechhhH
Q 036374 342 LASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI-----M-----SHPTPFPTVILKMEDF 405 (706)
Q Consensus 342 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~-----~-----~~~~~~p~~~i~~~~~ 405 (706)
.....|.+. +..+++|||+|++| .+|..+++++||.++|++| ... + .....+|+++++.+++
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 445789766 56889999999999 5899999999999999998 221 1 2234789999999999
Q ss_pred HHHHHHHhcC
Q 036374 406 ERVKLYINST 415 (706)
Q Consensus 406 ~~l~~~~~~~ 415 (706)
++|..++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9999887643
No 62
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.35 E-value=0.00037 Score=63.75 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=60.7
Q ss_pred ccccCCCCCC--CC----cccccEEEEee-----cccchheeecCceEEEecC-CCC--C-------------CCCcCcc
Q 036374 344 SRQCSLFCLD--EN----LVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI--M-------------SHPTPFP 396 (706)
Q Consensus 344 ~~~c~~~~~~--~~----~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~--~-------------~~~~~~p 396 (706)
.+.|.+.... +. ...++|+|++| .+|..+++++||.++|++| .+. . .....+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4678875442 22 37889999999 4899999999999999999 322 1 1123589
Q ss_pred EEEechhhHHHHHHHHhcCCCcEEE
Q 036374 397 TVILKMEDFERVKLYINSTEKPQVH 421 (706)
Q Consensus 397 ~~~i~~~~~~~l~~~~~~~~~~~~~ 421 (706)
+++|+.++++.|+..+..+...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988776654
No 63
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.22 E-value=0.0019 Score=59.23 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=59.6
Q ss_pred ceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeec-------ccchheeecCceEEEecC-CCC-C-----
Q 036374 324 NKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNF-------RGDVETFRVGALGSIQPA-STI-M----- 389 (706)
Q Consensus 324 ~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~-------~k~~~~~~~Ga~g~i~~~-~~~-~----- 389 (706)
...++++.+... +..+...+++|||+++++. +|..+++++||.|+|++| ..+ .
T Consensus 23 ~~~~lV~~g~G~-------------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~ 89 (127)
T cd04819 23 AKGEPVDAGYGL-------------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGD 89 (127)
T ss_pred eeEEEEEeCCCC-------------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccc
Confidence 456788765432 1122355799999999982 468899999999999998 222 1
Q ss_pred -----CCCcCccEEEechhhHHHHHHHHhcCC
Q 036374 390 -----SHPTPFPTVILKMEDFERVKLYINSTE 416 (706)
Q Consensus 390 -----~~~~~~p~~~i~~~~~~~l~~~~~~~~ 416 (706)
.....+|++.|+.+|++.|...++.+.
T Consensus 90 ~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 90 EGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred ccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999998754
No 64
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.19 E-value=0.00066 Score=62.81 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=51.0
Q ss_pred CCCcccccEEEEeec----------ccchheeecCceEEEecC-C--CCC-----CC---CcCccEEEechhhHHHHHHH
Q 036374 353 DENLVKGKILLCDNF----------RGDVETFRVGALGSIQPA-S--TIM-----SH---PTPFPTVILKMEDFERVKLY 411 (706)
Q Consensus 353 ~~~~~~gkivl~~~~----------~k~~~~~~~Ga~g~i~~~-~--~~~-----~~---~~~~p~~~i~~~~~~~l~~~ 411 (706)
...+++|||+|++|. +|..+++++||.|+|+|| . ++. .+ ...+|+++|++++++.|+..
T Consensus 51 ~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~ 130 (139)
T cd04817 51 ICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAA 130 (139)
T ss_pred cCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHH
Confidence 345789999999982 568899999999999999 3 331 11 45799999999999999998
Q ss_pred HhcC
Q 036374 412 INST 415 (706)
Q Consensus 412 ~~~~ 415 (706)
+...
T Consensus 131 l~~~ 134 (139)
T cd04817 131 LGQS 134 (139)
T ss_pred hcCC
Confidence 8543
No 65
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.06 E-value=0.00095 Score=63.26 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=60.4
Q ss_pred ccccCCCCCCC---CcccccEEEEee-----cccchheeecCceEEEecC-CCC----C----C--CCcCccEEEechhh
Q 036374 344 SRQCSLFCLDE---NLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI----M----S--HPTPFPTVILKMED 404 (706)
Q Consensus 344 ~~~c~~~~~~~---~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~----~----~--~~~~~p~~~i~~~~ 404 (706)
.++|.+....+ ....|+|+|++| .+|..+++++||.++|++| ... + . ....+|+++|+.++
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 56898766533 789999999999 5899999999999999999 222 1 1 14579999999999
Q ss_pred HHHHHHHHhcCCC
Q 036374 405 FERVKLYINSTEK 417 (706)
Q Consensus 405 ~~~l~~~~~~~~~ 417 (706)
++.|..++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987655
No 66
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.00 E-value=0.12 Score=45.05 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=60.7
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEEcCCceEEee
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSP 694 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~v~~P 694 (706)
..+.+.+|+|.|..+..|++.... ...-.++++|..-.+ .+|++.+++|++.... ..+.+.+.|.....+..+.+|
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~-~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~--~~g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPE-SLSSFFSVEPPSGFL-APGESVELEVTFSPTK--PLGDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCC-cCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC--CCceEEEEEEEEECCeEEEEE
Confidence 667778899999999999987543 234557777777667 8999999999999543 234588999887666678888
Q ss_pred EEEE
Q 036374 695 IVVY 698 (706)
Q Consensus 695 ~~~~ 698 (706)
+-+.
T Consensus 97 v~a~ 100 (102)
T PF14874_consen 97 VKAE 100 (102)
T ss_pred EEEE
Confidence 7664
No 67
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=95.50 E-value=0.03 Score=51.78 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=52.8
Q ss_pred CCcccccEEEEeeccc------------------chheeecCceEEEecC-CCC--------C----CCCcCccEEEech
Q 036374 354 ENLVKGKILLCDNFRG------------------DVETFRVGALGSIQPA-STI--------M----SHPTPFPTVILKM 402 (706)
Q Consensus 354 ~~~~~gkivl~~~~~k------------------~~~~~~~Ga~g~i~~~-~~~--------~----~~~~~~p~~~i~~ 402 (706)
..+++|||+++.+... ...++++||.++|++| .+. . .....+|++.|+.
T Consensus 35 ~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ 114 (134)
T cd04815 35 AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISV 114 (134)
T ss_pred hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEech
Confidence 5689999999987333 5888999999999998 211 1 1235699999999
Q ss_pred hhHHHHHHHHhcCCCcEEE
Q 036374 403 EDFERVKLYINSTEKPQVH 421 (706)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~ 421 (706)
+|+..|...+..+...+++
T Consensus 115 ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 115 EDADMLERLAARGKPIRVN 133 (134)
T ss_pred hcHHHHHHHHhCCCCeEEe
Confidence 9999999999887655543
No 68
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.11 E-value=0.24 Score=41.02 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=37.4
Q ss_pred ceEEEEEEEEeccCCC-eeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecc
Q 036374 614 FSIKFLRTVTNVGLAN-TTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAI 671 (706)
Q Consensus 614 ~~~~~~rtv~n~g~~~-~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 671 (706)
...+++.+|+|.|..+ ...++++.. |.|-++...|.++.--++|++++++++|+++.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 4788999999999754 567888888 99999888888875338999999999999875
No 69
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.79 E-value=0.56 Score=42.21 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=41.0
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccC
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQ 673 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 673 (706)
.-.++..++|.+..+.+|++++.. ++|+++......+++ ++|++.++.|.|..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g-~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEG-LPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES--SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEec-CCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 456888999999999999999999 889999665588999 899999999999987643
No 70
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=92.89 E-value=0.11 Score=50.36 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=48.2
Q ss_pred CCcccccEEEEee-----cccchheeecCceEEEecCC--CC--C-------------------------C---------
Q 036374 354 ENLVKGKILLCDN-----FRGDVETFRVGALGSIQPAS--TI--M-------------------------S--------- 390 (706)
Q Consensus 354 ~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~~--~~--~-------------------------~--------- 390 (706)
..+++|||+|+++ .+|..+++++||.|+|+|++ +. . .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4578999999998 57899999999999999982 10 0 0
Q ss_pred -CCcCccEEEechhhHHHHHHHHhc
Q 036374 391 -HPTPFPTVILKMEDFERVKLYINS 414 (706)
Q Consensus 391 -~~~~~p~~~i~~~~~~~l~~~~~~ 414 (706)
.--.+|+.-|+.++++.|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 012488999999999999998854
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=92.74 E-value=0.28 Score=46.18 Aligned_cols=80 Identities=14% Similarity=0.041 Sum_probs=52.3
Q ss_pred eeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeec-----------------------ccchheeecCceEE
Q 036374 325 KFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNF-----------------------RGDVETFRVGALGS 381 (706)
Q Consensus 325 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~-----------------------~k~~~~~~~Ga~g~ 381 (706)
.-++|+.+... ....|........+++|||||+.+. .|..+++..||.|+
T Consensus 21 tg~lVfvGyGi-------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aV 93 (151)
T cd04822 21 TAPVVFAGYGI-------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAV 93 (151)
T ss_pred eEeEEEecCCc-------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEE
Confidence 45777766432 1345665666678999999999753 36788899999999
Q ss_pred EecCC--CCCCCCcC------ccEEEechhhHHHHHHH
Q 036374 382 IQPAS--TIMSHPTP------FPTVILKMEDFERVKLY 411 (706)
Q Consensus 382 i~~~~--~~~~~~~~------~p~~~i~~~~~~~l~~~ 411 (706)
|++++ ........ -..++++....+.+...
T Consensus 94 Iv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 94 IVVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred EEEeCCcccCcccccccccCccceEEechHHHHHHhhh
Confidence 99992 21111111 22566777666666554
No 72
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=91.94 E-value=0.17 Score=46.82 Aligned_cols=54 Identities=20% Similarity=0.126 Sum_probs=41.5
Q ss_pred eeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeec-----------------ccchheeecCceEEEecC
Q 036374 325 KFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNF-----------------RGDVETFRVGALGSIQPA 385 (706)
Q Consensus 325 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~-----------------~k~~~~~~~Ga~g~i~~~ 385 (706)
.-++|+.+.... ...|....+...+++|||||+.+. .|..++++.||.|+|+++
T Consensus 23 ~gelVfvGyG~~-------~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 23 EAPLVFVGYGLV-------APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred eEeEEEecCCcC-------ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 456777654321 345766666778999999999972 378899999999999998
No 73
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=90.75 E-value=0.31 Score=45.32 Aligned_cols=55 Identities=22% Similarity=0.119 Sum_probs=42.3
Q ss_pred ceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeec-----------------------ccchheeecCceE
Q 036374 324 NKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNF-----------------------RGDVETFRVGALG 380 (706)
Q Consensus 324 ~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~-----------------------~k~~~~~~~Ga~g 380 (706)
...++|+.+.... ...|....+...+++||||++.+. .|...++++||.|
T Consensus 20 ~~aelVfvGyGi~-------a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~g 92 (142)
T cd04814 20 KDAPLVFVGYGIK-------APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAG 92 (142)
T ss_pred cceeeEEecCCcC-------CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcE
Confidence 4567887764422 345777777788999999999652 3778899999999
Q ss_pred EEecC
Q 036374 381 SIQPA 385 (706)
Q Consensus 381 ~i~~~ 385 (706)
+|+++
T Consensus 93 vIii~ 97 (142)
T cd04814 93 VLIVH 97 (142)
T ss_pred EEEEe
Confidence 99999
No 74
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=90.12 E-value=0.72 Score=50.38 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=60.5
Q ss_pred cccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC----------CCCCcCccEEEechhhHH
Q 036374 343 ASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI----------MSHPTPFPTVILKMEDFE 406 (706)
Q Consensus 343 ~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~----------~~~~~~~p~~~i~~~~~~ 406 (706)
+.+.|.+. ....++|+++..| .+|...++++||.++++.| ..+ ...+..+|++++.+++++
T Consensus 83 pld~cs~~---~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~ 159 (541)
T KOG2442|consen 83 PLDSCSTL---QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGR 159 (541)
T ss_pred CccccCCC---CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHH
Confidence 34455533 3568899999999 5899999999999999999 221 233577999999999999
Q ss_pred HHHHHHhcCCCcEEEE
Q 036374 407 RVKLYINSTEKPQVHI 422 (706)
Q Consensus 407 ~l~~~~~~~~~~~~~i 422 (706)
.+.....++.+.++.+
T Consensus 160 ~l~~~~~~~~~V~~~l 175 (541)
T KOG2442|consen 160 DLNKSTRSNDNVELAL 175 (541)
T ss_pred HHHhhhccCCeEEEEE
Confidence 9998777777766666
No 75
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=89.69 E-value=11 Score=34.14 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=56.1
Q ss_pred CeEEEEeecCCCceEEEEEEEEeccCCCeeEEEEEeec---Ccc--------------eE------EEEEcCeEEEeeCC
Q 036374 602 PSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTT---SID--------------VK------INVTPDALSFESVN 658 (706)
Q Consensus 602 psi~~~~~~~~~~~~~~~rtv~n~g~~~~ty~~~~~~~---~~g--------------~~------v~v~p~~~~~~~~g 658 (706)
..|-+....+ ...+++.+|+|.++...+|.+.+... ..| +. +++ |..+++ +++
T Consensus 17 ~YFdL~~~P~--q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~ 92 (121)
T PF06030_consen 17 SYFDLKVKPG--QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPN 92 (121)
T ss_pred CeEEEEeCCC--CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCC
Confidence 3455544444 48899999999999999999875432 111 00 111 445888 899
Q ss_pred cEEEEEEEEEecccCCCceEEEEEEEE
Q 036374 659 DKKSFVVTVDGAILQANHTVSASLLWS 685 (706)
Q Consensus 659 ~~~~~~vt~~~~~~~~~~~~~G~i~~~ 685 (706)
++++++++++.+...-.+.+-|.|.++
T Consensus 93 ~sk~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 93 ESKTVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred CEEEEEEEEEcCCCCcCCEEEeeEEEE
Confidence 999999999988765566778878775
No 76
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=86.68 E-value=16 Score=32.85 Aligned_cols=69 Identities=16% Similarity=0.069 Sum_probs=46.7
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeec---C---cceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEE
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTT---S---IDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWS 685 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~---~---~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~ 685 (706)
..+.+.+|+|.|+.+..+.+.+... + +.-.+.++|..+.+ ++|+++.+.| +.....+......=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 4566788999998777777766641 1 11257789999999 8999999999 7654434444444455554
No 77
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=82.93 E-value=0.67 Score=43.27 Aligned_cols=31 Identities=16% Similarity=-0.069 Sum_probs=28.8
Q ss_pred CcccccEEEEee-----cccchheeecCceEEEecC
Q 036374 355 NLVKGKILLCDN-----FRGDVETFRVGALGSIQPA 385 (706)
Q Consensus 355 ~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~ 385 (706)
-+++|||+|++. ..|+.+++..||.|+|||.
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYs 72 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYV 72 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEec
Confidence 679999999996 6899999999999999998
No 78
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=81.00 E-value=1 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCCCCCcEEEEEccccCCCCcCCC
Q 036374 98 PTVESDMIIGVLDNGIWPESDMFD 121 (706)
Q Consensus 98 ~~~G~GVvVgVIDtGid~~Hp~f~ 121 (706)
.+.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 689999999999999999888775
No 79
>COG1470 Predicted membrane protein [Function unknown]
Probab=78.56 E-value=30 Score=38.23 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=47.5
Q ss_pred ceEEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcC-----eEEEeeCCcEEEEEEEEEeccc
Q 036374 614 FSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPD-----ALSFESVNDKKSFVVTVDGAIL 672 (706)
Q Consensus 614 ~~~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~-----~~~~~~~g~~~~~~vt~~~~~~ 672 (706)
.+..++.++.|.|..+.+|..++...|+|....+.-. ++.+ .+|++++++|.|.++..
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~n 346 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLN 346 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCC
Confidence 3678999999999999999999996688877766543 4566 79999999999988653
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=77.76 E-value=20 Score=39.52 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=55.5
Q ss_pred ceEEEEEEEEeccCCC-eeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEE
Q 036374 614 FSIKFLRTVTNVGLAN-TTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWS 685 (706)
Q Consensus 614 ~~~~~~rtv~n~g~~~-~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~ 685 (706)
...+....+.|.|..+ ..-++++.. |.|-++.|+|.++-.-++|+++++++|++++.....+-++=+|+-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~-PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNG-PQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecC-CccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 3688888999999764 556778888 9999999999987655899999999999997644334465556554
No 81
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=75.45 E-value=10 Score=42.23 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=47.4
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecc
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAI 671 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 671 (706)
.-.++..+.|.+..+.+|+++++. .++.++...++.+++ ++|++.++.|.|..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g-~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLG-LPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEec-CCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 456788899999999999999999 888888876558888 8999999999998865
No 82
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=74.24 E-value=1.6 Score=43.74 Aligned_cols=32 Identities=28% Similarity=0.173 Sum_probs=28.8
Q ss_pred CCcccccEEEEee-----cccchheeecCceEEEecC
Q 036374 354 ENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA 385 (706)
Q Consensus 354 ~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~ 385 (706)
..+++|||||+++ .+|..+++..||.|+|+|+
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~ 103 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYS 103 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEe
Confidence 5689999999986 3689999999999999999
No 83
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=70.78 E-value=42 Score=31.11 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=50.1
Q ss_pred eEEEEEEEEeccCC-CeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEE
Q 036374 615 SIKFLRTVTNVGLA-NTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWS 685 (706)
Q Consensus 615 ~~~~~rtv~n~g~~-~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~ 685 (706)
...+..-+.|.... -+..++.... -..+++.-.|..+++ .|++.+.++.++++.+.. .+.+||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat-~gdLklve~p~~~tL-~P~~~~~i~~~iKVsSte-tGvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELAT-LGDLKLVERPQPITL-APHGFARIKATIKVSSTE-TGVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEe-cCCcEEccCCCceee-CCCcEEEEEEEEEEEecc-CCEEEEEEEEe
Confidence 35555566676543 2344454545 567888888999999 899999999999997754 56899999986
No 84
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=66.17 E-value=33 Score=29.75 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=39.4
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecc
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAI 671 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 671 (706)
..+...+|+|.++...-|.+.... |..+. |.|..-.+ .+|+++++.|++....
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~-~~~y~--v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTN-PNRYR--VKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES--TTTEE--EESSEEEE--TTEEEEEEEEE-SSS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCC-CceEE--ecCCCEEE-CCCCEEEEEEEEEecc
Confidence 467778999999988888888776 76655 57998777 8999999999998743
No 85
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=63.40 E-value=8.7 Score=36.48 Aligned_cols=35 Identities=26% Similarity=0.096 Sum_probs=28.7
Q ss_pred CCCCCcccccEEEEeec------------------------ccchheeecCceEEEecC
Q 036374 351 CLDENLVKGKILLCDNF------------------------RGDVETFRVGALGSIQPA 385 (706)
Q Consensus 351 ~~~~~~~~gkivl~~~~------------------------~k~~~~~~~Ga~g~i~~~ 385 (706)
.+...|++||||++... .|...+.+.||.|+|++.
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~ 100 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVH 100 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 44567899999999851 277889999999999886
No 86
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.12 E-value=17 Score=38.87 Aligned_cols=73 Identities=14% Similarity=0.068 Sum_probs=54.3
Q ss_pred ccccCCCCC---CCCcccccEEEEee-----cccchheeecCceEEEecC--CCC-------CCCCcCccEEEechhhHH
Q 036374 344 SRQCSLFCL---DENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA--STI-------MSHPTPFPTVILKMEDFE 406 (706)
Q Consensus 344 ~~~c~~~~~---~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~--~~~-------~~~~~~~p~~~i~~~~~~ 406 (706)
.+.|.+... ........++|+.| .+|..+++++|..++|+|| ... ......+++++++...|+
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 356765332 24556678888888 5899999999999999999 221 234567889999999999
Q ss_pred HHHHHHhcCC
Q 036374 407 RVKLYINSTE 416 (706)
Q Consensus 407 ~l~~~~~~~~ 416 (706)
.|.+|...+.
T Consensus 142 ~l~~~~~~~~ 151 (348)
T KOG4628|consen 142 LLSSYAGRTE 151 (348)
T ss_pred HHHHhhcccc
Confidence 9988865444
No 87
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=56.16 E-value=1.2e+02 Score=25.40 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=33.2
Q ss_pred ceEEEEEEEEeccCC-CeeEEEEEeecCcceEEEEEcCeE-EEeeCCcEEEEEEEEEec
Q 036374 614 FSIKFLRTVTNVGLA-NTTYKAEVKTTSIDVKINVTPDAL-SFESVNDKKSFVVTVDGA 670 (706)
Q Consensus 614 ~~~~~~rtv~n~g~~-~~ty~~~~~~~~~g~~v~v~p~~~-~~~~~g~~~~~~vt~~~~ 670 (706)
...+++.+|+|.|.. ...+.+.+.. .|..+ .-..+ .+ ++|+++++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~--~~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYL--DGNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEE--TTEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEE--CCcee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 478899999999986 4666776655 33333 11122 45 789999888888876
No 88
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=55.94 E-value=39 Score=27.95 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=29.4
Q ss_pred EEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEEcCC
Q 036374 644 KINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWSDGT 688 (706)
Q Consensus 644 ~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~ 688 (706)
.+++.|..+++ ..|+++.|+++++..... - ...+.|+...
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~~---~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSAK---V-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCCC---c-cceEEEEECC
Confidence 46788999998 789999999997654321 1 6778887543
No 89
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=48.60 E-value=77 Score=23.96 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=24.8
Q ss_pred ceEEEEEEEEeccCCCeeEEEEE-eecCcceEEEEEcCeEEE
Q 036374 614 FSIKFLRTVTNVGLANTTYKAEV-KTTSIDVKINVTPDALSF 654 (706)
Q Consensus 614 ~~~~~~rtv~n~g~~~~ty~~~~-~~~~~g~~v~v~p~~~~~ 654 (706)
...+++.+++|.|....+ .+.+ ...|+|+++ .|.++++
T Consensus 12 d~v~Yti~v~N~g~~~a~-~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNGNVPAT-NVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECCCCceE-eEEEEEcCCCCCEE--EeCcEEE
Confidence 479999999999986544 2222 222778776 3555554
No 90
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=44.98 E-value=1.7e+02 Score=25.30 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=36.3
Q ss_pred ceEEEEEEEEeccCCC-eeEEEEEeec---CcceE---EEEEcCeEEEeeCCcEEEEEEEEEecc
Q 036374 614 FSIKFLRTVTNVGLAN-TTYKAEVKTT---SIDVK---INVTPDALSFESVNDKKSFVVTVDGAI 671 (706)
Q Consensus 614 ~~~~~~rtv~n~g~~~-~ty~~~~~~~---~~g~~---v~v~p~~~~~~~~g~~~~~~vt~~~~~ 671 (706)
...++..+++|..+.. .+-++.+... -.|+. +......+++ ++|++.++++++....
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 4789999999998876 5533332111 25663 4555666777 8999999998888765
No 91
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=41.86 E-value=1.2e+02 Score=25.26 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=12.7
Q ss_pred eEEEeeCCcEEEEEEEEEecc
Q 036374 651 ALSFESVNDKKSFVVTVDGAI 671 (706)
Q Consensus 651 ~~~~~~~g~~~~~~vt~~~~~ 671 (706)
..++ ++|++++|+.+++...
T Consensus 53 ~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 53 EETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEE--TT-EEEEEEEESS--
T ss_pred EEEE-CCCCEEEEEEEECCCC
Confidence 4566 7899999988887655
No 92
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=39.30 E-value=30 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=18.9
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcc
Q 036374 502 AAYVRSFHPDWSPSSIKSALMTTA 525 (706)
Q Consensus 502 aALl~~~~P~lsp~~ik~~L~~TA 525 (706)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345789999999999999997543
No 93
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=37.20 E-value=83 Score=38.01 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=43.0
Q ss_pred CCCCCCCeEEEEeecC------CCceEEEEEEEEeccCCCeeEEEEEeec-CcceEEEEEc-------CeEEEeeCCcEE
Q 036374 596 TKDLNLPSIAAQVEVH------NPFSIKFLRTVTNVGLANTTYKAEVKTT-SIDVKINVTP-------DALSFESVNDKK 661 (706)
Q Consensus 596 ~~~lN~psi~~~~~~~------~~~~~~~~rtv~n~g~~~~ty~~~~~~~-~~g~~v~v~p-------~~~~~~~~g~~~ 661 (706)
..-|.|-.|....+.- ..+..+++.+|+|+|+.+..-.+-+-.. |.+ .+ ..| +++.+ ++||++
T Consensus 643 G~GLSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~-~~P~k~L~gF~Kv~L-~pGes~ 719 (765)
T PRK15098 643 GYGLSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKREGATVVQLYLQDVTA-SM-SRPVKELKGFEKIML-KPGETQ 719 (765)
T ss_pred cCCCCCccEEeeccEeccccccCCCeEEEEEEEEECCCCCccEEEEEeccCCCC-CC-CCHHHhccCceeEeE-CCCCeE
Confidence 3445555555444321 0136889999999998765554433221 322 11 123 24556 899999
Q ss_pred EEEEEEEecc
Q 036374 662 SFVVTVDGAI 671 (706)
Q Consensus 662 ~~~vt~~~~~ 671 (706)
+++++++...
T Consensus 720 ~V~~~l~~~~ 729 (765)
T PRK15098 720 TVSFPIDIEA 729 (765)
T ss_pred EEEEeecHHH
Confidence 9998888754
No 94
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=35.05 E-value=1.4e+02 Score=21.65 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=24.4
Q ss_pred EEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEE
Q 036374 620 RTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTV 667 (706)
Q Consensus 620 rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~ 667 (706)
.+++|.|+.+...+- ++..-.=..++. +.=.+ ++|++..++|++
T Consensus 2 F~~~N~g~~~L~I~~-v~tsCgCt~~~~--~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITD-VQTSCGCTTAEY--SKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEE-eeEccCCEEeeC--CcceE-CCCCEEEEEEEC
Confidence 367899886544332 222122233333 33235 799999888864
No 95
>PLN03080 Probable beta-xylosidase; Provisional
Probab=33.44 E-value=86 Score=37.95 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=34.0
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeec-CcceEEEEEc-------CeEEEeeCCcEEEEEEEEEe
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTT-SIDVKINVTP-------DALSFESVNDKKSFVVTVDG 669 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~-~~g~~v~v~p-------~~~~~~~~g~~~~~~vt~~~ 669 (706)
..+++.+|||+|+......+-+-.. |.+ .+. .| +++.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~-~~~-~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPV-VPG-VPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCcc-CCC-CcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 4789999999999766665543221 321 110 12 24556 79999999888876
No 96
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=31.10 E-value=23 Score=16.06 Aligned_cols=6 Identities=33% Similarity=0.756 Sum_probs=4.2
Q ss_pred ccCCCC
Q 036374 438 PFSGRG 443 (706)
Q Consensus 438 ~fSS~G 443 (706)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 97
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=30.77 E-value=3.2e+02 Score=22.85 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=35.9
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEE
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTVS 679 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~ 679 (706)
...+..+++|.|....++++.-..... -.|.++++ ++|+++++.+.+. ...+||.
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y~~-----~~~~~~~v-~ag~~~~~~w~l~----~s~gwYD 73 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAYGG-----GGPWTYTV-AAGQTVSLTWPLA----ASGGWYD 73 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCcCC-----CCCEEEEE-CCCCEEEEEEeec----CCCCcEE
Confidence 457888999999887777775422011 12456677 7899887766652 2356776
No 98
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=29.36 E-value=4.3e+02 Score=23.86 Aligned_cols=79 Identities=14% Similarity=0.003 Sum_probs=44.3
Q ss_pred ceEEEEEEEEeccCCCeeEEEE----Eeec-Ccce----EEEE---EcCeEEEeeCCcEEEEEEEEEecccCCC--ceEE
Q 036374 614 FSIKFLRTVTNVGLANTTYKAE----VKTT-SIDV----KINV---TPDALSFESVNDKKSFVVTVDGAILQAN--HTVS 679 (706)
Q Consensus 614 ~~~~~~rtv~n~g~~~~ty~~~----~~~~-~~g~----~v~v---~p~~~~~~~~g~~~~~~vt~~~~~~~~~--~~~~ 679 (706)
+...+..++||.|+. +.++. +... ..|. ...- .+..++| ++|++..+.|+......... ....
T Consensus 18 g~~~~~l~~tN~s~~--~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL-~PG~sA~a~l~~~~~~~~~~~~~~~~ 94 (131)
T PF14016_consen 18 GQRHATLTFTNTSDT--PCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTL-APGGSAYAGLRWSNVGSGGGCKPVTP 94 (131)
T ss_pred CccEEEEEEEECCCC--cEEeccCCcEEEECCCCCcCCccccccCCCCCcEEE-CCCCEEEEEEEEecCCCCCCcCcccc
Confidence 467888999999874 34432 2111 1222 1111 2456888 89999999999987553322 2222
Q ss_pred EEEEEE--cCCceEEeeE
Q 036374 680 ASLLWS--DGTHNVRSPI 695 (706)
Q Consensus 680 G~i~~~--~~~~~v~~P~ 695 (706)
..|... ++...+++|+
T Consensus 95 ~~l~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 95 AGLTVTPPGGTAPVTVPW 112 (131)
T ss_pred CEEEEECCCCCccEEEeC
Confidence 224443 4445556554
No 99
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.78 E-value=3.8e+02 Score=26.03 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=41.1
Q ss_pred ceEEEEEEEEeccCCCeeEEEEEeec--C-cceEEEEEcCe--EEEeeCCcEEEEEEEEEecccCCCceEEEEEE
Q 036374 614 FSIKFLRTVTNVGLANTTYKAEVKTT--S-IDVKINVTPDA--LSFESVNDKKSFVVTVDGAILQANHTVSASLL 683 (706)
Q Consensus 614 ~~~~~~rtv~n~g~~~~ty~~~~~~~--~-~g~~v~v~p~~--~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~ 683 (706)
...+++.++.|+|+. .-|.+++..+ | ..+++.---.+ +.--++|++.+..+++++.. .+.+.++..+
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~--~G~f~~~~a~ 109 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK--SGYFNFTPAV 109 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee--eEEEEccCEE
Confidence 479999999999995 5566766552 3 44454211111 11127899998888888754 3444444433
No 100
>PRK15019 CsdA-binding activator; Provisional
Probab=27.76 E-value=57 Score=30.58 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=27.9
Q ss_pred eEeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 036374 486 NILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKS 519 (706)
Q Consensus 486 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~ 519 (706)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444555 68999999999999999999999976
No 101
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=27.01 E-value=3.7e+02 Score=23.74 Aligned_cols=41 Identities=12% Similarity=0.332 Sum_probs=33.2
Q ss_pred CCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCC
Q 036374 199 PSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYG 242 (706)
Q Consensus 199 P~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~ 242 (706)
++++|+.+--|. ||....++.-++++.+.|+++|-+|-...
T Consensus 36 ~~~elvgf~~Cg---GCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 36 EDVELVGFFTCG---GCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred CCeEEEEEeeCC---CCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 468888775544 68888999999999999999999987654
No 102
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.74 E-value=1.9e+02 Score=31.41 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=38.1
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEe-eCCcEEEEEEEEEec
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFE-SVNDKKSFVVTVDGA 670 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~-~~g~~~~~~vt~~~~ 670 (706)
..++.--+++.+....+-.+.++..|.|+.+++.|+..++. ..-+++.|.|+++..
T Consensus 91 dFkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~tkk~~V~vei~ 147 (403)
T COG4856 91 DFKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIEKKVTKKFPVSVEID 147 (403)
T ss_pred CeEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEeeeeEEEEeeeEEEc
Confidence 45555567887765555555666669999999999987762 233456677777664
No 103
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=26.26 E-value=64 Score=29.92 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=28.5
Q ss_pred eEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 036374 486 NILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSA 520 (706)
Q Consensus 486 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~ 520 (706)
..+.|.| =|+.|-|++||+.+.+-..+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3455666 589999999999999999999998743
No 104
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=26.19 E-value=52 Score=22.31 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHH
Q 036374 493 IASAFAAGAAAYV 505 (706)
Q Consensus 493 mAaP~VAG~aALl 505 (706)
.|||.+||++|-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 105
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=25.97 E-value=95 Score=22.14 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.0
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcc
Q 036374 501 AAAYVRSFHPDWSPSSIKSALMTTA 525 (706)
Q Consensus 501 ~aALl~~~~P~lsp~~ik~~L~~TA 525 (706)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998643
No 106
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=25.50 E-value=58 Score=24.97 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=22.8
Q ss_pred eeEeccccchhHHHHHHH------HHHHhhCCCCCHHHHHHHHH
Q 036374 485 YNILSGTSIASAFAAGAA------AYVRSFHPDWSPSSIKSALM 522 (706)
Q Consensus 485 y~~~sGTSmAaP~VAG~a------ALl~~~~P~lsp~~ik~~L~ 522 (706)
--.+.||=+..=.|.... .-+.+.+|.|++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 345667777655555543 23466799999999999984
No 107
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=24.68 E-value=2e+02 Score=30.51 Aligned_cols=73 Identities=23% Similarity=0.218 Sum_probs=50.3
Q ss_pred ccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCC----CcEEEEcccCCCCCC---ChhhHHHHHHHHHHhCCcEEEEe
Q 036374 197 AVPSARIAAYRVCHYPWPCNEADILAAFDDAIADG----VDIILTGATYGFAFD---FAEDAVAIGAFHAMEKGILTAVP 269 (706)
Q Consensus 197 vAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~g----v~VIN~SlG~~~~~~---~~~~~~~~a~~~a~~~Gv~vV~A 269 (706)
-.|.+++..|.+.- .+......|++||+.+-+.+ +|||-+-=||.+-.+ +.+..++.+ ..+.-+.|+.+
T Consensus 38 r~~~~~~~~~p~~v-QG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~vara---i~~~~~Pvisa 113 (319)
T PF02601_consen 38 RNPIVEIILYPASV-QGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARA---IAASPIPVISA 113 (319)
T ss_pred hCCCcEEEEEeccc-cccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHH---HHhCCCCEEEe
Confidence 45677777776654 44467888999999998765 899999999873222 222233433 33567899999
Q ss_pred cCCC
Q 036374 270 TGNM 273 (706)
Q Consensus 270 AGN~ 273 (706)
-|=+
T Consensus 114 IGHe 117 (319)
T PF02601_consen 114 IGHE 117 (319)
T ss_pred cCCC
Confidence 8876
No 108
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=24.49 E-value=87 Score=29.42 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=53.5
Q ss_pred ccccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-C--CC------------CCCCcCccEEEec
Q 036374 342 LASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-S--TI------------MSHPTPFPTVILK 401 (706)
Q Consensus 342 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~--~~------------~~~~~~~p~~~i~ 401 (706)
+....|.... +.....+.+.|++| ..|..+++++||..+|+.+ . +. ..+...+|++++-
T Consensus 72 dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fll 150 (193)
T KOG3920|consen 72 DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLL 150 (193)
T ss_pred CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEe
Confidence 4566787543 34467789999999 4678899999999999988 1 11 2345778999988
Q ss_pred hhhHHHHHHHHhcCC
Q 036374 402 MEDFERVKLYINSTE 416 (706)
Q Consensus 402 ~~~~~~l~~~~~~~~ 416 (706)
..+|..+...+..-.
T Consensus 151 g~~Gy~ir~sL~r~~ 165 (193)
T KOG3920|consen 151 GVTGYYIRVSLKRYF 165 (193)
T ss_pred ccceEEEehhHHHhC
Confidence 888877766665433
No 109
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=24.20 E-value=65 Score=29.89 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=27.8
Q ss_pred eEeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 036374 486 NILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKS 519 (706)
Q Consensus 486 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~ 519 (706)
..+.|.| =|+.|-|.+||+.+.+-..||++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444666 68999999999999999999999864
No 110
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=23.97 E-value=6.1e+02 Score=31.26 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=35.3
Q ss_pred CeEEEEeecCCCceEEEEEEEEecc-CCCeeEEEEEeec----CcceEEEEEcCeEEEeeCCcE-EEEEEEEEec
Q 036374 602 PSIAAQVEVHNPFSIKFLRTVTNVG-LANTTYKAEVKTT----SIDVKINVTPDALSFESVNDK-KSFVVTVDGA 670 (706)
Q Consensus 602 psi~~~~~~~~~~~~~~~rtv~n~g-~~~~ty~~~~~~~----~~g~~v~v~p~~~~~~~~g~~-~~~~vt~~~~ 670 (706)
++.++.+.. -+++.+|+-.| +...+.++.+... -+|........+|+| ++||+ |+++|.+--+
T Consensus 407 ~~Y~V~En~-----GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF-~PGEt~KtItV~IIDD 475 (928)
T TIGR00845 407 GHYTCLENC-----GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVF-KPGETQKEFRIGIIDD 475 (928)
T ss_pred CeEEEeecC-----cEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEE-CCCceEEEEEEEEccC
Confidence 455555443 23444544444 4344555555432 346677667789999 67776 5555555444
No 111
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=75 Score=29.58 Aligned_cols=32 Identities=16% Similarity=0.045 Sum_probs=25.9
Q ss_pred eEeccccchhHHHHHHHHHHHhhCCCCCHHHHH
Q 036374 486 NILSGTSIASAFAAGAAAYVRSFHPDWSPSSIK 518 (706)
Q Consensus 486 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik 518 (706)
..+.|=|= |++|.|.+|++++.+-..||++|.
T Consensus 72 ~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~ 103 (144)
T COG2166 72 LHFFGDSD-ARIVRGLLAILLAAYSGKTAAEIL 103 (144)
T ss_pred EEEeccch-hHHHHHHHHHHHHHHcCCCHHHHH
Confidence 34445443 689999999999999999999985
No 112
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=22.37 E-value=3.1e+02 Score=27.86 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=38.6
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeec--C---c----------ceEEEEEcCeEEEeeCCcEEEEEEEEEec
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTT--S---I----------DVKINVTPDALSFESVNDKKSFVVTVDGA 670 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~--~---~----------g~~v~v~p~~~~~~~~g~~~~~~vt~~~~ 670 (706)
......+|.|.|+.+.-+.+.+..- | . --++-++|..|++ ++|+++.+.|.-...
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg~ 101 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQA 101 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcCC
Confidence 3445678889998887777765331 1 1 1257789999999 899999887665543
No 113
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.74 E-value=2e+02 Score=32.05 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=54.1
Q ss_pred eeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCC-CcEEEEcccCCCCC---CChhhHHHHHHHHHHhCCcEEEEec
Q 036374 195 RGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADG-VDIILTGATYGFAF---DFAEDAVAIGAFHAMEKGILTAVPT 270 (706)
Q Consensus 195 ~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~g-v~VIN~SlG~~~~~---~~~~~~~~~a~~~a~~~Gv~vV~AA 270 (706)
+-=.|.++++.|-+.- .+..-...|++||+.|=+.+ +|||=+.=|+.+-. .+.+..+.+++ .+..+.||.|-
T Consensus 157 ~rR~P~~~viv~pt~V-QG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi---~~s~iPvISAV 232 (440)
T COG1570 157 SRRFPSVEVIVYPTLV-QGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAI---AASRIPVISAV 232 (440)
T ss_pred HhhCCCCeEEEEeccc-cCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHH---HhCCCCeEeec
Confidence 3346889999987766 44577888999999998876 99999998887322 23333444333 36678899888
Q ss_pred CCC
Q 036374 271 GNM 273 (706)
Q Consensus 271 GN~ 273 (706)
|-+
T Consensus 233 GHE 235 (440)
T COG1570 233 GHE 235 (440)
T ss_pred ccC
Confidence 876
No 114
>PRK13203 ureB urease subunit beta; Reviewed
Probab=21.62 E-value=2.3e+02 Score=24.73 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=27.8
Q ss_pred eEEEEEEEEeccCCCeeEEEE---------Eeec---CcceEEEEEcC--eEEEeeCCcEEEEEEE
Q 036374 615 SIKFLRTVTNVGLANTTYKAE---------VKTT---SIDVKINVTPD--ALSFESVNDKKSFVVT 666 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~---------~~~~---~~g~~v~v~p~--~~~~~~~g~~~~~~vt 666 (706)
..+.+.+|+|.|+.+-..-.. ++-+ --|..+.+ |+ .+.| .+|+++++++.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 19 RETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNI-PAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 567788999999975332211 1100 12333333 22 3456 68999977654
No 115
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=21.26 E-value=96 Score=28.19 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=26.3
Q ss_pred EeccccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 036374 487 ILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSA 520 (706)
Q Consensus 487 ~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~ 520 (706)
.+.|.|= |+.|-|++||+.+.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4455555 67999999999999999999998654
No 116
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=21.03 E-value=5.6e+02 Score=27.79 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=27.8
Q ss_pred ceEEEEEEEEeccCCCee---EE-EEEeec-----------C------cceEEEEEcCeEEEeeCCcEEEEEEEEEe
Q 036374 614 FSIKFLRTVTNVGLANTT---YK-AEVKTT-----------S------IDVKINVTPDALSFESVNDKKSFVVTVDG 669 (706)
Q Consensus 614 ~~~~~~rtv~n~g~~~~t---y~-~~~~~~-----------~------~g~~v~v~p~~~~~~~~g~~~~~~vt~~~ 669 (706)
++.+++.+|||.|+.+.. |+ +.++.. | .| ++|+|+.= + .+||+++++|+++-
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~p-I-~PGETrtl~V~a~d 335 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNSP-I-APGETRTLTVEAQD 335 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE-
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCCC-c-CCCceEEEEEEeeh
Confidence 588999999999986422 11 122211 1 23 34455542 2 79999999888864
No 117
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=20.16 E-value=2.5e+02 Score=24.49 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=28.0
Q ss_pred eEEEEEEEEeccCCCee----EEEE-----Eeec---CcceEEEEEcC--eEEEeeCCcEEEEEEE
Q 036374 615 SIKFLRTVTNVGLANTT----YKAE-----VKTT---SIDVKINVTPD--ALSFESVNDKKSFVVT 666 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~t----y~~~-----~~~~---~~g~~v~v~p~--~~~~~~~g~~~~~~vt 666 (706)
..+.+.+|+|.|+.+-. |+.- +.-+ --|..+.+ |+ .+.| .+|+++++++.
T Consensus 19 r~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 19 REAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDI-PAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecc-cCCCeEEE-CCCCeEEEEEE
Confidence 56778899999987533 2211 1110 12444443 22 3556 68999977654
Done!