BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036375
(1009 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 204/762 (26%), Positives = 306/762 (40%), Gaps = 157/762 (20%)
Query: 254 LSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFR-GSWKKIQILNFASNKLHGK 312
LS+ + G + GF +L L L+ N+LSG + L GS ++ LN +SN L
Sbjct: 84 LSNSHINGSVS-GFKCSASLTSLDLS-RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 313 LPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCV 372
F KV GG+ +L L+ DLS N+++G+ +D C
Sbjct: 140 ----------------FPGKVSGGL-----KLNSLEVLDLSANSISGANVVGWVLSDGC- 177
Query: 373 SSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXX 432
L + + N + G + +S+ NL L +S N IP
Sbjct: 178 ------GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF----------- 218
Query: 433 XXXXXQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGXXXXXXXXXX 492
LG L LD+S N L+G S S ++LK L
Sbjct: 219 --------------LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGP- 262
Query: 493 XXXWIPPFQVQSLNMRSC---QLGPSFPSWLK-TQQGVSFLDFSNASISGPIPNWFWDIX 548
IPP ++SL S + P +L ++ LD S G +P +F
Sbjct: 263 ----IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 549 XXXXXXXXXXXXXXXXXXXXXXIAPFADVDFRSNLLEGPIP----LPIVEIELLDLSNNH 604
+ SN G +P L + +++LDLS N
Sbjct: 319 LL------------------------ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 605 FSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE--MQLLQVIDLSRNXXXXXXXXXX 662
FSG +P++++ +L+ L +S N +G I ++ + LQ + L N
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 663 XNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHL------------------------N 698
NC+ L L LS++ LSG IP+SLG L++L+ L L +
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK 758
N LTG +PS N T+L + L NNR +G IP +G L IL L +N+FSG IP++
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAE 533
Query: 759 LSNLSSLQVLDLAENNLTGSIPGSV----GDL-------KAMAHVQNI-VKYLLFG---- 802
L + SL LDL N G+IP ++ G + K +++N +K G
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 803 -RYRGIYYEENLVINTKGSSKDTPRLF--------------HFIDLSGNNLHGDFPTQLT 847
++GI E+ ++T+ T R++ F+D+S N L G P ++
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 848 KLVGLVVLNLSRNHIGGQIPENISGLHQXXXXXXXXXXXXXXXXXXXXXXXXXXYINLSR 907
+ L +LNL N I G IP+ + L I+LS
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 908 NQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQDDESD 949
N LSG IP G TF + F NPGLCG PLP +C +D
Sbjct: 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNAD 754
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 137/544 (25%), Positives = 215/544 (39%), Gaps = 76/544 (13%)
Query: 122 NLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRV 181
NL++L++S F+ +P LG+ LQ+ D+S LS D ++ LK L
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN--KLSGDFSRAISTCTELKLL----- 252
Query: 182 DLSLVGSEWLGILKNLP--NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLF 239
++ ++++G + LP +L L L+ TG I + LDLS NHF
Sbjct: 253 --NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 240 P-------------------------NWLVNISTLVYVDLSDCDLYGRIPIGFGEL-PNL 273
P + L+ + L +DLS + G +P L +L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 274 QYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKV 333
L L+ NN L + +Q L +N GK+P +++N + L + L +
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Query: 334 EGGIPSSIARLCYLKEFDLSGNNLTGSLPE-----------ILQGTDLCVSSNSPLPSLI 382
G IPSS+ L L++ L N L G +P+ IL DL S L +
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 383 SMR---LGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXXXXXXXQL 439
++ L NN L G++P+W+ +LENL L LS N G IPA
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 440 NGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGXXXXXXXXXXXXXW--I 497
NGT+P + +++N + G R +K G + I
Sbjct: 551 NGTIPAAMFKQSG----KIAANFIAG-------KRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 498 PPFQVQSLNMRS-CQL------GPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIXXX 550
Q+ L+ R+ C + G + P++ + FLD S +SG IP +
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658
Query: 551 XXXXXXXXXXXXXXXXXXXXIAPFADVDFRSNLLEGPIPLPIVEIELL---DLSNNHFSG 607
+ +D SN L+G IP + + +L DLSNN+ SG
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Query: 608 PIPQ 611
PIP+
Sbjct: 719 PIPE 722
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 111/419 (26%), Positives = 178/419 (42%), Gaps = 63/419 (15%)
Query: 110 DIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTG 169
++P+ L + L+ L+LS F+G +P SL NL SA L L S ++ +G
Sbjct: 333 ELPMDTLL-KMRGLKVLDLSFNEFSGELPESLTNL--------SASLLTLDLSSNNF-SG 382
Query: 170 LVSLKHLAMNRV----DLSLVGSEWLG----ILKNLPNLTELHLSVCGLTGSITSITPVN 221
+ L +L N +L L + + G L N L LHLS L+G+I S + +
Sbjct: 383 PI-LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGS 440
Query: 222 LTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGN 281
L+ L L LN P L+ + TL + L DL G IP G NL ++SL+ N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS-N 499
Query: 282 NNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSI 341
N L+G + + G + + IL ++N G +P+ + + SL DL G IP+++
Sbjct: 500 NRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 342 --------------ARLCYLK---------------EFD---------LSGNNLTGSLPE 363
R Y+K EF LS N
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 364 ILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASX 423
+ G N+ S++ + + N L G +P+ + + L L L +N + G IP
Sbjct: 619 VYGGHTSPTFDNN--GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 424 XXXXXXXXXXXXXXQLNGTLPETLGSLPELSVLDVSSNSLTGIISEI-HFSRLSKLKFL 481
+L+G +P+ + +L L+ +D+S+N+L+G I E+ F KFL
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 201/738 (27%), Positives = 297/738 (40%), Gaps = 109/738 (14%)
Query: 254 LSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFR-GSWKKIQILNFASNKLHGK 312
LS+ + G + GF +L L L+ N+LSG + L GS ++ LN +SN L
Sbjct: 81 LSNSHINGSVS-GFKCSASLTSLDLS-RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 313 LPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCV 372
F KV GG+ +L L+ DLS N+++G+ +D C
Sbjct: 137 ----------------FPGKVSGGL-----KLNSLEVLDLSANSISGANVVGWVLSDGC- 174
Query: 373 SSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXX 432
L + + N + G + +S+ NL L +S N IP
Sbjct: 175 ------GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF----------- 215
Query: 433 XXXXXQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGXXXXXXXXXX 492
LG L LD+S N L+G S S ++LK L
Sbjct: 216 --------------LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGP- 259
Query: 493 XXXWIPPFQVQSLNMRSC---QLGPSFPSWLKTQ-QGVSFLDFSNASISGPIPNWFWDIX 548
IPP ++SL S + P +L ++ LD S G +P +F
Sbjct: 260 ----IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 549 XXXXXXXXXXXXXXXX-XXXXXXIAPFADVDFRSNLLEGPIPLPIVEIE----LLDLSNN 603
+ +D N G +P + + LDLS+N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 604 HFSGPIPQNISGSMPN-LIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXX 662
+FSGPI N+ + N L L + N TGKIP ++ L + LS N
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 663 XNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722
+ + L+ L L + L G IP L + L++L L+ N LTG +PS N T+L + L
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGS 782
NNR +G IP +G L IL L +N+FSG IP++L + SL LDL N G+IP +
Sbjct: 496 NNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 783 V----GDL-------KAMAHVQNI-VKYLLFG-----RYRGIYYEENLVINTKGSSKDTP 825
+ G + K +++N +K G ++GI E+ ++T+ T
Sbjct: 555 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 826 RLF--------------HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENIS 871
R++ F+D+S N L G P ++ + L +LNL N I G IP+ +
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 674
Query: 872 GLHQXXXXXXXXXXXXXXXXXXXXXXXXXXYINLSRNQLSGKIPFEGHMTTFDASSFAGN 931
L I+LS N LSG IP G TF + F N
Sbjct: 675 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 734
Query: 932 PGLCGDPLPVKCQDDESD 949
PGLCG PLP +C +D
Sbjct: 735 PGLCGYPLP-RCDPSNAD 751
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 137/544 (25%), Positives = 215/544 (39%), Gaps = 76/544 (13%)
Query: 122 NLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRV 181
NL++L++S F+ +P LG+ LQ+ D+S LS D ++ LK L
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN--KLSGDFSRAISTCTELKLL----- 249
Query: 182 DLSLVGSEWLGILKNLP--NLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLF 239
++ ++++G + LP +L L L+ TG I + LDLS NHF
Sbjct: 250 --NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 307
Query: 240 P-------------------------NWLVNISTLVYVDLSDCDLYGRIPIGFGEL-PNL 273
P + L+ + L +DLS + G +P L +L
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 274 QYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKV 333
L L+ NN L + +Q L +N GK+P +++N + L + L +
Sbjct: 368 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 427
Query: 334 EGGIPSSIARLCYLKEFDLSGNNLTGSLPE-----------ILQGTDLCVSSNSPLPSLI 382
G IPSS+ L L++ L N L G +P+ IL DL S L +
Sbjct: 428 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 383 SMR---LGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXXXXXXXQL 439
++ L NN L G++P+W+ +LENL L LS N G IPA
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 440 NGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGXXXXXXXXXXXXXW--I 497
NGT+P + +++N + G R +K G + I
Sbjct: 548 NGTIPAAMFKQSG----KIAANFIAG-------KRYVYIKNDGMKKECHGAGNLLEFQGI 596
Query: 498 PPFQVQSLNMRS-CQL------GPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDIXXX 550
Q+ L+ R+ C + G + P++ + FLD S +SG IP +
Sbjct: 597 RSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 655
Query: 551 XXXXXXXXXXXXXXXXXXXXIAPFADVDFRSNLLEGPIPLPIVEIELL---DLSNNHFSG 607
+ +D SN L+G IP + + +L DLSNN+ SG
Sbjct: 656 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Query: 608 PIPQ 611
PIP+
Sbjct: 716 PIPE 719
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 111/419 (26%), Positives = 178/419 (42%), Gaps = 63/419 (15%)
Query: 110 DIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTG 169
++P+ L + L+ L+LS F+G +P SL NL SA L L S ++ +G
Sbjct: 330 ELPMDTLL-KMRGLKVLDLSFNEFSGELPESLTNL--------SASLLTLDLSSNNF-SG 379
Query: 170 LVSLKHLAMNRV----DLSLVGSEWLG----ILKNLPNLTELHLSVCGLTGSITSITPVN 221
+ L +L N +L L + + G L N L LHLS L+G+I S + +
Sbjct: 380 PI-LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGS 437
Query: 222 LTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGN 281
L+ L L LN P L+ + TL + L DL G IP G NL ++SL+ N
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS-N 496
Query: 282 NNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSI 341
N L+G + + G + + IL ++N G +P+ + + SL DL G IP+++
Sbjct: 497 NRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 342 --------------ARLCYLK---------------EFD---------LSGNNLTGSLPE 363
R Y+K EF LS N
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 364 ILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASX 423
+ G N+ S++ + + N L G +P+ + + L L L +N + G IP
Sbjct: 616 VYGGHTSPTFDNN--GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Query: 424 XXXXXXXXXXXXXXQLNGTLPETLGSLPELSVLDVSSNSLTGIISEI-HFSRLSKLKFL 481
+L+G +P+ + +L L+ +D+S+N+L+G I E+ F KFL
Sbjct: 674 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 732
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 136/335 (40%), Gaps = 91/335 (27%)
Query: 608 PIPQNISGSMPNLIFLSVSG-NRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCT 666
PIP +++ ++P L FL + G N L G IP +I ++ T
Sbjct: 67 PIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKL------------------------T 101
Query: 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
L L ++++++SG IP L Q+ L +L + N L+G LP S +L +L + NR
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDL 786
SG IP G+ +++ N +G+IP +NL +L +DL+ N L G G
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 787 KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQL 846
K + L F + G SK+ + +DL N ++G P L
Sbjct: 221 KNTQKIHLAKNSLAFD------------LGKVGLSKN----LNGLDLRNNRIYGTLPQGL 264
Query: 847 TKLVGLVVLNLSRNHIGGQIPENISGLHQXXXXXXXXXXXXXXXXXXXXXXXXXXYINLS 906
T+L L LN+S N++ G+IP+
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQG------------------------------------- 287
Query: 907 RNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPV 941
G++ FD S++A N LCG PLP
Sbjct: 288 -----------GNLQRFDVSAYANNKCLCGSPLPA 311
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 105/365 (28%), Positives = 155/365 (42%), Gaps = 72/365 (19%)
Query: 32 CSENDLDALIDFKNGLEDPESRLASW-KGSNCCQ--WHGISCDDDTGAIVAINLGNPYHV 88
C+ D AL+ K L +P + L+SW ++CC W G+ CD DT Y V
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQT---------YRV 52
Query: 89 VNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAG----FTGVVPSSLGNL 144
N D SG N PIP SL NL YLN G G +P ++ L
Sbjct: 53 NNLDLSG---------LNLPKPYPIPS---SLANLPYLNFLYIGGINNLVGPIPPAIAKL 100
Query: 145 HRLQYFDVS-AELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTEL 203
+L Y ++ + D L + LV+L + N + +L S + +LPNL +
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLD-FSYNALSGTLPPS-----ISSLPNLVGI 154
Query: 204 HLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRI 263
++G+I S F+ LF + +S L G+I
Sbjct: 155 TFDGNRISGAIPD--------------SYGSFSKLF----------TSMTISRNRLTGKI 190
Query: 264 PIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSL 323
P F L NL ++ L+ N L G S LF GS K Q ++ A N L L V +L
Sbjct: 191 PPTFANL-NLAFVDLS-RNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDL-GKVGLSKNL 246
Query: 324 TNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPE--ILQGTDLCVSSN------ 375
DL + ++ G +P + +L +L ++S NNL G +P+ LQ D+ +N
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Query: 376 SPLPS 380
SPLP+
Sbjct: 307 SPLPA 311
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 17/229 (7%)
Query: 194 LKNLPNLTELHLSVCGLTGSITSITPV--NLTSPAVLDLSLNHFNSLFPNWLVNISTLVY 251
L NLP L L++ G+ + I P LT L ++ + + P++L I TLV
Sbjct: 72 LANLPYLNFLYIG--GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 252 VDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHG 311
+D S L G +P LPNL ++ GN +SG+ + K + + N+L G
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 312 KLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLC 371
K+P + AN+ +L DL +EG ++ L+ N+L L ++
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV------G 241
Query: 372 VSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIP 420
+S N L + L NN + G LP+ L+QL+ L L +S+N L G IP
Sbjct: 242 LSKN-----LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 12/133 (9%)
Query: 337 IPSSIARLCYLKEFDLSG-NNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL 395
IPSS+A L YL + G NNL G +P + + L L + + + ++ G +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI----------AKLTQLHYLYITHTNVSGAI 117
Query: 396 PEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXXXXXXXQLNGTLPETLGSLPEL-S 454
P++LSQ++ LV L SYN L G +P S +++G +P++ GS +L +
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177
Query: 455 VLDVSSNSLTGII 467
+ +S N LTG I
Sbjct: 178 SMTISRNRLTGKI 190
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 16/233 (6%)
Query: 239 FPNWLVNISTLVYVDLSDCD-LYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWK 297
P+ L N+ L ++ + + L G IP +L L YL + + N+SG+ F K
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT-HTNVSGAIPD-FLSQIK 125
Query: 298 KIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYL-KEFDLSGNN 356
+ L+F+ N L G LP S++++ +L ++ G IP S L +S N
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
LTG +P +L + L N L+G +N ++ L+ N L
Sbjct: 186 LTGKIPPTFANLNLAF-----------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 417 GPIPASXXXXXXXXXXXXXXXQLNGTLPETLGSLPELSVLDVSSNSLTGIISE 469
+ ++ GTLP+ L L L L+VS N+L G I +
Sbjct: 235 FDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 77/193 (39%), Gaps = 47/193 (24%)
Query: 690 TRLQSLHLNNNKLTG-------NLPSSFQNLTSLETLDLGN-NRFSGNIPSLLGNGFVGL 741
T Q+ +NN L+G +PSS NL L L +G N G IP + L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQL 103
Query: 742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLF 801
L + SG IP LS + +L LD + N L+G++P S+ L +
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV----------- 152
Query: 802 GRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNH 861
GI ++ N + G+ D+ +G F T + +SRN
Sbjct: 153 ----GITFDGNRI---SGAIPDS--------------YGSFSKLFTSMT------ISRNR 185
Query: 862 IGGQIPENISGLH 874
+ G+IP + L+
Sbjct: 186 LTGKIPPTFANLN 198
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 2/160 (1%)
Query: 592 IVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSR 651
+ ++ LL L++N +P I + NL L V+ N+L G ++ L + L R
Sbjct: 60 LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 652 NXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQ 711
N + T L L L Y+ L + +LT L+ L L NN+L +F
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 712 NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
LT L+TL L NN+ +P + L++L L+ N +
Sbjct: 179 KLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNNRFS 727
K LDL + LS + + +LT+L+ L+LN+NKL LP+ F+ L +LETL + +N+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD-- 785
+P + + V L L L N P +L+ L L L N L S+P V D
Sbjct: 99 A-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKL 156
Query: 786 --LKAMAHVQNIVKYLLFGRY 804
LK + N +K + G +
Sbjct: 157 TSLKELRLYNNQLKRVPEGAF 177
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 80/198 (40%), Gaps = 4/198 (2%)
Query: 577 VDFRSNLLEG-PIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIP 635
VD S L P +P + + LDL +N S +P + L L ++ N+L
Sbjct: 21 VDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 636 GSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL 695
G E++ L+ + ++ N L L L + L + P LT+L L
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138
Query: 696 HLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEI 755
L N+L F LTSL+ L L NN+ +P + L+ L L +N
Sbjct: 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVP 197
Query: 756 PSKLSNLSSLQVLDLAEN 773
+L L++L L EN
Sbjct: 198 EGAFDSLEKLKMLQLQEN 215
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 37/104 (35%), Gaps = 1/104 (0%)
Query: 378 LPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXXXXXXX 437
L +L +RL N LK P L L L+L YN LQ
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 438 QLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFL 481
QL L EL L + +N L + E F L KLK L
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKML 210
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 144/306 (47%), Gaps = 46/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
L NL +N S T + P L NL +L D+ ++ + + +T L +L +L
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 110
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
L+L ++ I LKNL NL L LS + +I+ I+ ++ LTS L+ S N
Sbjct: 111 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLNFSSNQVT 164
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
L P L N++TL +D+S + I + +L NL+ L +A NN +S G
Sbjct: 165 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 216
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
+ L+ N+L K ++A++T+LT+ DL + ++ P ++ L L E L N
Sbjct: 217 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 272
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
++ P L G L +L ++ L N L+ P +S L+NL LTL +N +
Sbjct: 273 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Query: 417 GPIPAS 422
P S
Sbjct: 319 DISPVS 324
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 116/242 (47%), Gaps = 37/242 (15%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
L L+LS NT +DI L L +LQ LN S T + P L NL L+ D+S+
Sbjct: 131 LNRLELSSNTISDI---SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV 185
Query: 158 ALSADSLDWLTGLVSLKH------------LAMNRVDLSLVGSEW--LGILKNLPNLTEL 203
+ L LT L SL + N +LSL G++ +G L +L NLT+L
Sbjct: 186 S-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 244
Query: 204 HLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
L+ I+++ P++ LT L L N +++ P L ++ L ++L++ L
Sbjct: 245 DLA----NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 298
Query: 263 IPIGFGELPNLQYLSLAGNNNLSGSCSQLF-RGSWKKIQILNFASNKLHGKLPSSVANMT 321
PI L NL YL+L NN S + S K+Q L F +NK+ SS+AN+T
Sbjct: 299 SPI--SNLKNLTYLTLYFNN-----ISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLT 349
Query: 322 SL 323
++
Sbjct: 350 NI 351
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 25/136 (18%)
Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
N T L L+LS +++S + ++L LT LQ L+ ++N++T P NLT+LE LD+ +
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 724 NRFSG--------NIPSLLGNG-----------FVGLRILSLRSNAFSGEIPSKLSNLSS 764
N+ S N+ SL+ L LSL N L++L++
Sbjct: 183 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTN 240
Query: 765 LQVLDLAENNLTGSIP 780
L LDLA N ++ P
Sbjct: 241 LTDLDLANNQISNLAP 256
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXX 657
LDL+NN S P +SG + L L + N+++ P + L + +L N
Sbjct: 244 LDLANNQISNLAP--LSG-LTKLTELKLGANQISNISPLA----GLTALTNLELNENQLE 296
Query: 658 XXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
N L L L ++++S + P S LT+LQ L NNK++ SS NLT++
Sbjct: 297 DISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNIN 352
Query: 718 TLDLGNNRFSGNIP 731
L G+N+ S P
Sbjct: 353 WLSAGHNQISDLTP 366
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 30/202 (14%)
Query: 583 LLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQ 642
L E P +P+ ELL L++N + G +P+L+ L + N+LTG P +
Sbjct: 20 LKEIPRDIPLHTTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 643 LLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKL 702
+Q + L N K+ ++S G L +L++L+L +N++
Sbjct: 79 HIQELQLGEN----------------KIKEISNKMFLG--------LHQLKTLNLYDNQI 114
Query: 703 TGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNL 762
+ +P SF++L SL +L+L +N F+ N L LR SL A PSK+ +
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCH--LAWFAEWLRKKSLNGGAARCGAPSKVRD- 171
Query: 763 SSLQVLDLAENNLTGSIPGSVG 784
+Q+ DL + S S G
Sbjct: 172 --VQIKDLPHSEFKCSSENSEG 191
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 267 FGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNF 326
FG LP+L L L N L+G F G+ IQ L NK+ + L
Sbjct: 50 FGRLPHLVKLELK-RNQLTGIEPNAFEGA-SHIQELQLGENKIKEISNKMFLGLHQLKTL 107
Query: 327 DLFDKKVEGGIPSSIARLCYLKEFDLSGN 355
+L+D ++ +P S L L +L+ N
Sbjct: 108 NLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 143/306 (46%), Gaps = 46/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
L NL +N S T + P L NL +L D+ ++ + + +T L +L +L
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 110
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
L+L ++ I LKNL NL L LS + +I+ I+ ++ LTS L S N
Sbjct: 111 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLSFSSNQVT 164
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
L P L N++TL +D+S + I + +L NL+ L +A NN +S G
Sbjct: 165 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 216
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
+ L+ N+L K ++A++T+LT+ DL + ++ P ++ L L E L N
Sbjct: 217 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 272
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
++ P L G L +L ++ L N L+ P +S L+NL LTL +N +
Sbjct: 273 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Query: 417 GPIPAS 422
P S
Sbjct: 319 DISPVS 324
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 116/242 (47%), Gaps = 37/242 (15%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
L L+LS NT +DI L L +LQ L+ S T + P L NL L+ D+S+
Sbjct: 131 LNRLELSSNTISDI---SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV 185
Query: 158 ALSADSLDWLTGLVSLKH------------LAMNRVDLSLVGSEW--LGILKNLPNLTEL 203
+ L LT L SL + N +LSL G++ +G L +L NLT+L
Sbjct: 186 S-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 244
Query: 204 HLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
L+ I+++ P++ LT L L N +++ P L ++ L ++L++ L
Sbjct: 245 DLA----NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 298
Query: 263 IPIGFGELPNLQYLSLAGNNNLSGSCSQLF-RGSWKKIQILNFASNKLHGKLPSSVANMT 321
PI L NL YL+L NN S + S K+Q L F +NK+ SS+AN+T
Sbjct: 299 SPI--SNLKNLTYLTLYFNN-----ISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLT 349
Query: 322 SL 323
++
Sbjct: 350 NI 351
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 25/136 (18%)
Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
N T L L+LS +++S + ++L LT LQ L ++N++T P NLT+LE LD+ +
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 724 NRFSG--------NIPSLLGNG-----------FVGLRILSLRSNAFSGEIPSKLSNLSS 764
N+ S N+ SL+ L LSL N L++L++
Sbjct: 183 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTN 240
Query: 765 LQVLDLAENNLTGSIP 780
L LDLA N ++ P
Sbjct: 241 LTDLDLANNQISNLAP 256
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXX 657
LDL+NN S P +SG + L L + N+++ P + L + +L N
Sbjct: 244 LDLANNQISNLAP--LSG-LTKLTELKLGANQISNISPLA----GLTALTNLELNENQLE 296
Query: 658 XXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
N L L L ++++S + P S LT+LQ L NNK++ SS NLT++
Sbjct: 297 DISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNIN 352
Query: 718 TLDLGNNRFSGNIP 731
L G+N+ S P
Sbjct: 353 WLSAGHNQISDLTP 366
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 143/306 (46%), Gaps = 46/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
L NL +N S T + P L NL +L D+ ++ + + +T L +L +L
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 110
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
L+L ++ I LKNL NL L LS + +I+ I+ ++ LTS L S N
Sbjct: 111 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLSFSSNQVT 164
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
L P L N++TL +D+S + I + +L NL+ L +A NN +S G
Sbjct: 165 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 216
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
+ L+ N+L K ++A++T+LT+ DL + ++ P ++ L L E L N
Sbjct: 217 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 272
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
++ P L G L +L ++ L N L+ P +S L+NL LTL +N +
Sbjct: 273 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Query: 417 GPIPAS 422
P S
Sbjct: 319 DISPVS 324
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 37/242 (15%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
L L+LS NT +DI L L +LQ L+ S T + P L NL L+ D+S+
Sbjct: 131 LNRLELSSNTISDI---SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV 185
Query: 158 ALSADSLDWLTGLVSLKH------------LAMNRVDLSLVGSEW--LGILKNLPNLTEL 203
+ L LT L SL + N +LSL G++ +G L +L NLT+L
Sbjct: 186 S-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 244
Query: 204 HLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
L+ I+++ P++ LT L L N +++ P L ++ L ++L++ L
Sbjct: 245 DLA----NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 298
Query: 263 IPIGFGELPNLQYLSLAGNNNLSGSCSQLF-RGSWKKIQILNFASNKLHGKLPSSVANMT 321
PI L NL YL+L NN S + S K+Q L F++NK+ SS+AN+T
Sbjct: 299 SPI--SNLKNLTYLTLYFNN-----ISDISPVSSLTKLQRLFFSNNKVSDV--SSLANLT 349
Query: 322 SL 323
++
Sbjct: 350 NI 351
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 25/136 (18%)
Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
N T L L+LS +++S + ++L LT LQ L ++N++T P NLT+LE LD+ +
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 724 NRFSG--------NIPSLLGNG-----------FVGLRILSLRSNAFSGEIPSKLSNLSS 764
N+ S N+ SL+ L LSL N L++L++
Sbjct: 183 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTN 240
Query: 765 LQVLDLAENNLTGSIP 780
L LDLA N ++ P
Sbjct: 241 LTDLDLANNQISNLAP 256
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXX 657
LDL+NN S P +SG + L L + N+++ P + L + +L N
Sbjct: 244 LDLANNQISNLAP--LSG-LTKLTELKLGANQISNISPLA----GLTALTNLELNENQLE 296
Query: 658 XXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
N L L L ++++S + P S LT+LQ L +NNK++ SS NLT++
Sbjct: 297 DISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVSD--VSSLANLTNIN 352
Query: 718 TLDLGNNRFSGNIP 731
L G+N+ S P
Sbjct: 353 WLSAGHNQISDLTP 366
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 18/184 (9%)
Query: 106 NTFNDIPIPEFLGSLENLQYLNLSEAG--FTGVVPSSLGNLHRLQYFDVSAE-LFALSAD 162
N F+++ +P +L++L+LS G F G S L+Y D+S + +S++
Sbjct: 339 NAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Query: 163 SLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNL 222
L GL L+HL +L + + +L NL L +S + I L
Sbjct: 392 FL----GLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFN-GL 444
Query: 223 TSPAVLDLSLNHFNSLF-PNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGN 281
+S VL ++ N F F P+ + L ++DLS C L P F L +LQ L+++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 282 NNLS 285
N S
Sbjct: 505 NFFS 508
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 98/215 (45%), Gaps = 16/215 (7%)
Query: 91 SDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLG-NLHRLQY 149
SD + L+YLDLSFN + FLG LE L++L+ + + S+ +L L Y
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMS-SNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 150 FDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCG 209
D+S ++ + + GL SL+ L M S + I L NLT L LS C
Sbjct: 426 LDISHTHTRVAFNGI--FNGLSSLEVLKM--AGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 210 LTGSITSITPVN-LTSPAVLDLSLNHFNSL--FPNWLVNISTLVYVDLSDCDLYGRIPIG 266
L S T N L+S VL++S N+F SL FP +N +L +D S +
Sbjct: 482 LEQ--LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SLQVLDYSLNHIMTSKKQE 537
Query: 267 FGELP-NLQYLSLAGNNNLSGSCSQLFRGSWKKIQ 300
P +L +L+L N+ + +C W K Q
Sbjct: 538 LQHFPSSLAFLNLT-QNDFACTCEHQSFLQWIKDQ 571
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 79/207 (38%), Gaps = 38/207 (18%)
Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXX 657
L+L N F G P S+ L F S G ++ ++ L+ +DLSRN
Sbjct: 309 LELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLSFK 362
Query: 658 XXXXXXN--CTFLKVLDLSYSSLSGVIPAS-----LGQLTRLQSLHLNNNKLTG------ 704
+ T LK LDLS++ GVI S L QL L H N +++
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 705 ----------------NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRS 748
F L+SLE L + N F N + L L L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 749 NAFSGEIPSKLSNLSSLQVLDLAENNL 775
P+ ++LSSLQVL+++ NN
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRL 147
L+ L+++ N +PE+ +L NL++L+LS + + L LH++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
L+VLDLS + + + L+ L +L L N + +F L+SL+ L +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 728 G--NIPSLLGNGFVGLRILSLRSNAF-SGEIPSKLSNLSSLQVLDLAENNL 775
N P +G+ L+ L++ N S ++P SNL++L+ LDL+ N +
Sbjct: 114 SLENFP--IGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 15/157 (9%)
Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNN 724
T ++L L + ++ + P L L+ L+L +N+L G LP F +LT L LDLG N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 725 RFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVG 784
+ + +PS + + V L+ L + N + E+P + L+ L L L +N L G+
Sbjct: 99 QLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156
Query: 785 DLKAMAHVQNIVKYLLFG-----RYRGIYYEENLVIN 816
L ++ H LFG R I Y N V +
Sbjct: 157 RLSSLTHA------YLFGNPWDCECRDIMYLRNWVAD 187
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 601 SNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXX 660
S H S P +G N L + N++T PG + L+ + L N
Sbjct: 28 SKRHASVP-----AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82
Query: 661 XXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLD 720
+ T L VLDL + L+ + A +L L+ L + NKLT LP + LT L L
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141
Query: 721 LGNNRF 726
L N+
Sbjct: 142 LDQNQL 147
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 18/184 (9%)
Query: 106 NTFNDIPIPEFLGSLENLQYLNLSEAG--FTGVVPSSLGNLHRLQYFDVSAE-LFALSAD 162
N F+++ +P +L++L+LS G F G S L+Y D+S + +S++
Sbjct: 363 NAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN 415
Query: 163 SLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNL 222
L GL L+HL +L + + +L NL L +S + I L
Sbjct: 416 FL----GLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFN-GL 468
Query: 223 TSPAVLDLSLNHFNSLF-PNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGN 281
+S VL ++ N F F P+ + L ++DLS C L P F L +LQ L+++ N
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 282 NNLS 285
N S
Sbjct: 529 NFFS 532
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLG-NLHRLQYFDVSAEL 156
L+YLDLSFN + FLG LE L++L+ + + S+ +L L Y D+S
Sbjct: 399 LKYLDLSFNGVITMS-SNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456
Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
++ + + GL SL+ L M S + I L NLT L LS C L S
Sbjct: 457 TRVAFNGI--FNGLSSLEVLKM--AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LS 510
Query: 217 ITPVN-LTSPAVLDLSLNHFNSL--FPNWLVNISTLVYVDLSDCDLYGRIPIGFGELP-N 272
T N L+S VL++S N+F SL FP +N +L +D S + P +
Sbjct: 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SLQVLDYSLNHIMTSKKQELQHFPSS 568
Query: 273 LQYLSLAGNNNLSGSCSQLFRGSWKKIQ 300
L +L+L N+ + +C W K Q
Sbjct: 569 LAFLNLT-QNDFACTCEHQSFLQWIKDQ 595
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 4/162 (2%)
Query: 617 MPNLIFLSVSGNRLTGKIPGSIGEMQL--LQVIDLSRNXXXXXXXXXXXNCTFLKVLDLS 674
+P+L FL +S N L+ K S + L+ +DLS N L+ LD
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQ 428
Query: 675 YSSLSGVIPASLG-QLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSL 733
+S+L + S+ L L L +++ F L+SLE L + N F N
Sbjct: 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 488
Query: 734 LGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
+ L L L P+ ++LSSLQVL+++ NN
Sbjct: 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 96 SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVS 153
S LE L ++ N+F + +P+ L NL +L+LS+ + P++ +L LQ ++S
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
L+VLDLS + + + L+ L +L L N + +F L+SL+ L +
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 728 G--NIPSLLGNGFVGLRILSLRSNAF-SGEIPSKLSNLSSLQVLDLAENNL 775
N P +G+ L+ L++ N S ++P SNL++L+ LDL+ N +
Sbjct: 138 SLENFP--IGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRL 147
L+ L+++ N +PE+ +L NL++L+LS + + L LH++
Sbjct: 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 116/242 (47%), Gaps = 38/242 (15%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
L L+LS NT +DI L SL+ L + N T + P L NL L+ D+S+
Sbjct: 135 LNRLELSSNTISDISALSGLTSLQQLSFGN----QVTDLKP--LANLTTLERLDISSNKV 188
Query: 158 ALSADSLDWLTGLVSLKH------------LAMNRVDLSLVGSEW--LGILKNLPNLTEL 203
+ L LT L SL + N +LSL G++ +G L +L NLT+L
Sbjct: 189 S-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 247
Query: 204 HLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
L+ I+++ P++ LT L L N +++ P L ++ L ++L++ L
Sbjct: 248 DLA----NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 301
Query: 263 IPIGFGELPNLQYLSLAGNNNLSGSCSQLF-RGSWKKIQILNFASNKLHGKLPSSVANMT 321
PI L NL YL+L NN S + S K+Q L FA+NK+ SS+AN+T
Sbjct: 302 SPI--SNLKNLTYLTLYFNN-----ISDISPVSSLTKLQRLFFANNKVSDV--SSLANLT 352
Query: 322 SL 323
++
Sbjct: 353 NI 354
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 142/306 (46%), Gaps = 47/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
L NL +N S T + P L NL +L D+ ++ + + +T L +L +L
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 114
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
L+L ++ I LKNL NL L LS + +I+ I+ ++ LTS L N
Sbjct: 115 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLSFG-NQVT 167
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
L P L N++TL +D+S + I + +L NL+ L +A NN +S G
Sbjct: 168 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 219
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
+ L+ N+L K ++A++T+LT+ DL + ++ P ++ L L E L N
Sbjct: 220 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 275
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
++ P L G L +L ++ L N L+ P +S L+NL LTL +N +
Sbjct: 276 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 321
Query: 417 GPIPAS 422
P S
Sbjct: 322 DISPVS 327
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXX 657
LDL+NN S P +SG + L L + N+++ P + L + +L N
Sbjct: 247 LDLANNQISNLAP--LSG-LTKLTELKLGANQISNISPLA----GLTALTNLELNENQLE 299
Query: 658 XXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
N L L L ++++S + P S LT+LQ L NNK++ SS NLT++
Sbjct: 300 DISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VSSLANLTNIN 355
Query: 718 TLDLGNNRFSGNIP 731
L G+N+ S P
Sbjct: 356 WLSAGHNQISDLTP 369
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 26/136 (19%)
Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
N T L L+LS +++S + ++L LT LQ L N ++T P NLT+LE LD+ +
Sbjct: 131 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDLKP--LANLTTLERLDISS 185
Query: 724 NRFSG--------NIPSLLGNG-----------FVGLRILSLRSNAFSGEIPSKLSNLSS 764
N+ S N+ SL+ L LSL N L++L++
Sbjct: 186 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTN 243
Query: 765 LQVLDLAENNLTGSIP 780
L LDLA N ++ P
Sbjct: 244 LTDLDLANNQISNLAP 259
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 12/189 (6%)
Query: 101 LDLSFNTFNDIPIPEFLGSLENLQYLNLSEAG--FTGVVPSSLGNLHRLQYFDVSAE-LF 157
L+L N +P F L L L+LS G F G S L+Y D+S +
Sbjct: 33 LELESNKLQSLPHGVF-DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 158 ALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSI 217
+S++ L GL L+HL +L + SE+ + +L NL L +S + I
Sbjct: 92 TMSSNFL----GLEQLEHLDFQHSNLKQM-SEF-SVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 218 TPVNLTSPAVLDLSLNHFNSLF-PNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYL 276
L+S VL ++ N F F P+ + L ++DLS C L P F L +LQ L
Sbjct: 146 FN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 277 SLAGNNNLS 285
+++ NN S
Sbjct: 205 NMSHNNFFS 213
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 98/215 (45%), Gaps = 16/215 (7%)
Query: 91 SDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLG-NLHRLQY 149
SD + L+YLDLSFN + FLG LE L++L+ + + S+ +L L Y
Sbjct: 73 SDFGTTSLKYLDLSFNGVITMS-SNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130
Query: 150 FDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCG 209
D+S ++ + + GL SL+ L M S + I L NLT L LS C
Sbjct: 131 LDISHTHTRVAFNGI--FNGLSSLEVLKM--AGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 210 LTGSITSITPVN-LTSPAVLDLSLNHFNSL--FPNWLVNISTLVYVDLSDCDLYGRIPIG 266
L S T N L+S VL++S N+F SL FP +N +L +D S +
Sbjct: 187 LEQ--LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SLQVLDYSLNHIMTSKKQE 242
Query: 267 FGELP-NLQYLSLAGNNNLSGSCSQLFRGSWKKIQ 300
P +L +L+L N+ + +C W K Q
Sbjct: 243 LQHFPSSLAFLNLT-QNDFACTCEHQSFLQWIKDQ 276
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 710 FQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLD 769
F L+SLE L + N F N + L L L P+ ++LSSLQVL+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 770 LAENNL 775
++ NN
Sbjct: 206 MSHNNF 211
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 38/242 (15%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
L L+LS NT +DI L SL+ L + N T + P L NL L+ D+S+
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLNFGN----QVTDLKP--LANLTTLERLDISSNKV 184
Query: 158 ALSADSLDWLTGLVSLKH------------LAMNRVDLSLVGSEW--LGILKNLPNLTEL 203
+ L LT L SL + N +LSL G++ +G L +L NLT+L
Sbjct: 185 S-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 243
Query: 204 HLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
L+ I+++ P++ LT L L N +++ P L ++ L ++L++ L
Sbjct: 244 DLA----NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 297
Query: 263 IPIGFGELPNLQYLSLAGNNNLSGSCSQLF-RGSWKKIQILNFASNKLHGKLPSSVANMT 321
PI L NL YL+L NN S + S K+Q L F++NK+ SS+AN+T
Sbjct: 298 SPI--SNLKNLTYLTLYFNN-----ISDISPVSSLTKLQRLFFSNNKVSDV--SSLANLT 348
Query: 322 SL 323
++
Sbjct: 349 NI 350
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 47/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
L NL +N S T + P L NL +L D+ ++ + + +T L +L +L
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 110
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
L+L ++ I LKNL NL L LS + +I+ I+ ++ LTS L+ N
Sbjct: 111 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLNFG-NQVT 163
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
L P L N++TL +D+S + I + +L NL+ L +A NN +S G
Sbjct: 164 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 215
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
+ L+ N+L K ++A++T+LT+ DL + ++ P ++ L L E L N
Sbjct: 216 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 271
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
++ P L G L +L ++ L N L+ P +S L+NL LTL +N +
Sbjct: 272 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 317
Query: 417 GPIPAS 422
P S
Sbjct: 318 DISPVS 323
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXX 657
LDL+NN S P +SG + L L + N+++ P + L + +L N
Sbjct: 243 LDLANNQISNLAP--LSG-LTKLTELKLGANQISNISPLA----GLTALTNLELNENQLE 295
Query: 658 XXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
N L L L ++++S + P S LT+LQ L +NNK++ SS NLT++
Sbjct: 296 DISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVSD--VSSLANLTNIN 351
Query: 718 TLDLGNNRFSGNIP 731
L G+N+ S P
Sbjct: 352 WLSAGHNQISDLTP 365
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 26/136 (19%)
Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
N T L L+LS +++S + ++L LT LQ L+ N ++T P NLT+LE LD+ +
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGN-QVTDLKP--LANLTTLERLDISS 181
Query: 724 NRFSG--------NIPSLLGNG-----------FVGLRILSLRSNAFSGEIPSKLSNLSS 764
N+ S N+ SL+ L LSL N L++L++
Sbjct: 182 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTN 239
Query: 765 LQVLDLAENNLTGSIP 780
L LDLA N ++ P
Sbjct: 240 LTDLDLANNQISNLAP 255
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 8/187 (4%)
Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFL 668
+P IS N L++ N++ S ++ L+++ LSRN L
Sbjct: 58 VPDGIST---NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
L+L + L+ + + L++L+ L L NN + +F + SL LDLG +
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174
Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA 788
I G LR L+L EIP+ L+ L L LDL+ N+L+ PGS +
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGS---FQG 229
Query: 789 MAHVQNI 795
+ H+Q +
Sbjct: 230 LMHLQKL 236
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
L LDLS + LS + P S L LQ L + +++ ++F NL SL ++L +N +
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 28/198 (14%)
Query: 621 IFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLS-YSSLS 679
IFL GNR++ S + L ++ L N L+ LDLS + L
Sbjct: 36 IFLH--GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 680 GVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL----------------DLGN 723
V PA+ L RL +LHL+ L P F+ L +L+ L DLGN
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 724 --------NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
NR S ++P G L L L N + P +L L L L NNL
Sbjct: 154 LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Query: 776 TGSIPGSVGDLKAMAHVQ 793
+ ++ L+A+ +++
Sbjct: 213 SALPTEALAPLRALQYLR 230
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 28/198 (14%)
Query: 621 IFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLS-YSSLS 679
IFL GNR++ S + L ++ L N L+ LDLS + L
Sbjct: 37 IFLH--GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 680 GVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL----------------DLGN 723
V PA+ L RL +LHL+ L P F+ L +L+ L DLGN
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 724 --------NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
NR S ++P G L L L N + P +L L L L NNL
Sbjct: 155 LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 776 TGSIPGSVGDLKAMAHVQ 793
+ ++ L+A+ +++
Sbjct: 214 SALPTEALAPLRALQYLR 231
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 47/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
L NL +N S T + P L NL +L D+ ++ + + +T L +L +L
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 110
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
L+L ++ I LKNL NL L LS + +I+ I+ ++ LTS L+ N
Sbjct: 111 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLNFG-NQVT 163
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
L P L N++TL +D+S + I + +L NL+ L +A NN +S G
Sbjct: 164 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 215
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
+ L+ N+L K ++A++T+LT+ DL + ++ P ++ L L E L N
Sbjct: 216 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 271
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
++ P L G L +L ++ L N L+ P +S L+NL LTL +N +
Sbjct: 272 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 317
Query: 417 GPIPAS 422
P S
Sbjct: 318 DISPVS 323
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 115/242 (47%), Gaps = 38/242 (15%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
L L+LS NT +DI L SL+ L + N T + P L NL L+ D+S+
Sbjct: 131 LNRLELSSNTISDISALSGLTSLQQLNFGN----QVTDLKP--LANLTTLERLDISSNKV 184
Query: 158 ALSADSLDWLTGLVSLKH------------LAMNRVDLSLVGSEW--LGILKNLPNLTEL 203
+ L LT L SL + N +LSL G++ +G L +L NLT+L
Sbjct: 185 S-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 243
Query: 204 HLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
L+ I+++ P++ LT L L N +++ P L ++ L ++L++ L
Sbjct: 244 DLA----NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 297
Query: 263 IPIGFGELPNLQYLSLAGNNNLSGSCSQLF-RGSWKKIQILNFASNKLHGKLPSSVANMT 321
PI L NL YL+L NN S + S K+Q L F +NK+ SS+AN+T
Sbjct: 298 SPI--SNLKNLTYLTLYFNN-----ISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLT 348
Query: 322 SL 323
++
Sbjct: 349 NI 350
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXX 657
LDL+NN S P +SG + L L + N+++ P + L + +L N
Sbjct: 243 LDLANNQISNLAP--LSG-LTKLTELKLGANQISNISPLA----GLTALTNLELNENQLE 295
Query: 658 XXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
N L L L ++++S + P S LT+LQ L NNK++ SS NLT++
Sbjct: 296 DISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNIN 351
Query: 718 TLDLGNNRFSGNIP 731
L G+N+ S P
Sbjct: 352 WLSAGHNQISDLTP 365
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 26/136 (19%)
Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
N T L L+LS +++S + ++L LT LQ L+ N ++T P NLT+LE LD+ +
Sbjct: 127 NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGN-QVTDLKP--LANLTTLERLDISS 181
Query: 724 NRFSG--------NIPSLLGNG-----------FVGLRILSLRSNAFSGEIPSKLSNLSS 764
N+ S N+ SL+ L LSL N L++L++
Sbjct: 182 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTN 239
Query: 765 LQVLDLAENNLTGSIP 780
L LDLA N ++ P
Sbjct: 240 LTDLDLANNQISNLAP 255
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 3/178 (1%)
Query: 613 ISGSMP-NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVL 671
+ S+P N +L++ N + + ++ L+++ LS+N L L
Sbjct: 29 VPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTL 88
Query: 672 DLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIP 731
+L + L+ V + L++L+ L L NN + +F + SL LDLG + I
Sbjct: 89 ELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYIS 148
Query: 732 SLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAM 789
G V LR L+L +IP+ L+ L L+ L+L+ N L PGS L ++
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLK-DIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSL 204
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 27/108 (25%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
L+ L+L +L + +L L RL+ L L+ N+L P SFQ LTSL L L
Sbjct: 158 LRYLNLGMCNLKDI--PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL------ 209
Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
+ ++ ++ NAF +L SL+ L+L+ NNL
Sbjct: 210 -----------MHAQVATIERNAF--------DDLKSLEELNLSHNNL 238
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 88/197 (44%), Gaps = 13/197 (6%)
Query: 173 LKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSL 232
L+HL + ++ +LV +G LP+L L L LT T L+ L L
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEY-LSKLRELWLRN 116
Query: 233 NHFNSLFPNWLVN-ISTLVYVDLSDCDLYGRI-PIGFGELPNLQYLSLAGNNNLSG--SC 288
N S+ P++ N + +L +DL + I F L NL+YL+L G NL +
Sbjct: 117 NPIESI-PSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL-GMCNLKDIPNL 174
Query: 289 SQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLK 348
+ L R ++ L + N+L P S +TSL L +V ++ L L+
Sbjct: 175 TALVR-----LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 349 EFDLSGNNLTGSLPEIL 365
E +LS NNL SLP L
Sbjct: 230 ELNLSHNNLM-SLPHDL 245
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 115/242 (47%), Gaps = 38/242 (15%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
L L+LS NT +DI L SL+ L + N T + P L NL L+ D+S+
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQQLSFGN----QVTDLKP--LANLTTLERLDISSNKV 189
Query: 158 ALSADSLDWLTGLVSLKH------------LAMNRVDLSLVGSEW--LGILKNLPNLTEL 203
+ L LT L SL + N +LSL G++ +G L +L NLT+L
Sbjct: 190 S-DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 248
Query: 204 HLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
L+ I+++ P++ LT L L N +++ P L ++ L ++L++ L
Sbjct: 249 DLA----NNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 302
Query: 263 IPIGFGELPNLQYLSLAGNNNLSGSCSQLF-RGSWKKIQILNFASNKLHGKLPSSVANMT 321
PI L NL YL+L NN S + S K+Q L F +NK+ SS+AN+T
Sbjct: 303 SPI--SNLKNLTYLTLYFNN-----ISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLT 353
Query: 322 SL 323
++
Sbjct: 354 NI 355
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 142/306 (46%), Gaps = 47/306 (15%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
L NL +N S T + P L NL +L D+ ++ + + +T L +L +L
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKL--VDI-----LMNNNQIADITPLANLTNLT-- 115
Query: 180 RVDLSLVGSEWLGI--LKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHFN 236
L+L ++ I LKNL NL L LS + +I+ I+ ++ LTS L N
Sbjct: 116 --GLTLFNNQITDIDPLKNLTNLNRLELS----SNTISDISALSGLTSLQQLSFG-NQVT 168
Query: 237 SLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
L P L N++TL +D+S + I + +L NL+ L +A NN +S G
Sbjct: 169 DLKP--LANLTTLERLDIS-SNKVSDISV-LAKLTNLESL-IATNNQISDITP---LGIL 220
Query: 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356
+ L+ N+L K ++A++T+LT+ DL + ++ P ++ L L E L N
Sbjct: 221 TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276
Query: 357 LTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
++ P L G L +L ++ L N L+ P +S L+NL LTL +N +
Sbjct: 277 ISNISP--LAG----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322
Query: 417 GPIPAS 422
P S
Sbjct: 323 DISPVS 328
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXX 657
LDL+NN S P +SG + L L + N+++ P + L + +L N
Sbjct: 248 LDLANNQISNLAP--LSG-LTKLTELKLGANQISNISPLA----GLTALTNLELNENQLE 300
Query: 658 XXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717
N L L L ++++S + P S LT+LQ L NNK++ SS NLT++
Sbjct: 301 DISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNIN 356
Query: 718 TLDLGNNRFSGNIP 731
L G+N+ S P
Sbjct: 357 WLSAGHNQISDLTP 370
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 26/136 (19%)
Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
N T L L+LS +++S + ++L LT LQ L N ++T P NLT+LE LD+ +
Sbjct: 132 NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDLKP--LANLTTLERLDISS 186
Query: 724 NRFSG--------NIPSLLGNG-----------FVGLRILSLRSNAFSGEIPSKLSNLSS 764
N+ S N+ SL+ L LSL N L++L++
Sbjct: 187 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTN 244
Query: 765 LQVLDLAENNLTGSIP 780
L LDLA N ++ P
Sbjct: 245 LTDLDLANNQISNLAP 260
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 122/296 (41%), Gaps = 20/296 (6%)
Query: 580 RSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG 639
R + P +P E LLDL N + Q+ S P+L L ++ N ++ PG+
Sbjct: 20 RKRFVAVPEGIP-TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFN 77
Query: 640 EMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699
+ L+ + L N + L LD+S + + ++ L L+SL + +
Sbjct: 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137
Query: 700 NKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKL 759
N L +F L SLE L L + +IP+ + GL +L LR +
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196
Query: 760 SNLSSLQVLDLAE---------NNLTG----SIPGSVGDLKAMAHVQNIVKYLLFGRYRG 806
L L+VL+++ N L G S+ + +L A+ ++ V++L++ R+
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA--VRHLVYLRFLN 254
Query: 807 IYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHI 862
+ Y N + +GS I L G L P L L VLN+S N +
Sbjct: 255 LSY--NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 11/186 (5%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDV-SAEL 156
L L L N IP+ F G L NL L++SE ++ +L+ L+ +V +L
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTG-LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 157 FALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITS 216
+S + +GL SL+ L + + +L+ + +E L L L L HL++ +I
Sbjct: 141 VYISHRAF---SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI----NAIRD 193
Query: 217 ITPVNLTSPAVLDLS-LNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQY 275
+ L VL++S + +++ PN L ++ L + ++ C+L + L L++
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 276 LSLAGN 281
L+L+ N
Sbjct: 253 LNLSYN 258
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
+L+ L+LSY+ +S + + L +L RLQ + L +L P +F+ L L L++ N+
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307
Query: 726 FS 727
+
Sbjct: 308 LT 309
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%)
Query: 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSL 678
NL LS++ LT ++ + L+ ++LS N L+ + L L
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 679 SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
+ V P + L L+ L+++ N+LT S F ++ +LETL L +N
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 31/222 (13%)
Query: 91 SDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVP-SSLGNLHRLQY 149
SD + L +LDLSFN I F+G LE LQ+L+ + V S+ +L +L Y
Sbjct: 366 SDLGTNSLRHLDLSFNG-AIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 423
Query: 150 FDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVC- 208
D+S + D + GL SL L M S + + N NLT L LS C
Sbjct: 424 LDISYTNTKIDFDGI--FLGLTSLNTLKM--AGNSFKDNTLSNVFANTTNLTFLDLSKCQ 479
Query: 209 ------GLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
G+ ++ + +N++ +L L +H+N L+ ++STL DC + R
Sbjct: 480 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-----SLSTL------DCS-FNR 527
Query: 263 IPIGFGELPN----LQYLSLAGNNNLSGSCSQLFRGSWKKIQ 300
I G L + L + +L NN+++ C W K Q
Sbjct: 528 IETSKGILQHFPKSLAFFNLT-NNSVACICEHQKFLQWVKEQ 568
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYS 676
+PN+ + + ++ K+P I + IDLS N N + L+ LDLS
Sbjct: 6 VPNITYQCM--DQKLSKVPDDIPSST--KNIDLSFNPLKILKSYSFSNFSELQWLDLSRC 61
Query: 677 SLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGN 736
+ + + L L +L L N + P SF LTSLE L + + + S
Sbjct: 62 EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIG 120
Query: 737 GFVGLRILSLRSN-AFSGEIPSKLSNLSSLQVLDLAEN 773
+ L+ L++ N S ++P+ SNL++L +DL+ N
Sbjct: 121 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 119 SLENLQYLNLSEAG--FTGVVPSSLGNLHRLQYFDVSAE-LFALSADSLDWLTGLVSLKH 175
+L +L YL+LS F+G S + L++ D+S +SA+ GL L+H
Sbjct: 343 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN----FMGLEELQH 398
Query: 176 LAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHF 235
L L V +E+ L +L L L +S I + LTS L ++ N F
Sbjct: 399 LDFQHSTLKRV-TEFSAFL-SLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSF 455
Query: 236 -NSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQYLSLAGNN 282
++ N N + L ++DLS C L +I G F L LQ L+++ NN
Sbjct: 456 KDNTLSNVFANTTNLTFLDLSKCQL-EQISWGVFDTLHRLQLLNMSHNN 503
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
N T L LDLS L + L RLQ L++++N L S + L SL TLD
Sbjct: 466 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 525
Query: 724 NR 725
NR
Sbjct: 526 NR 527
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 316 SVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQG-------- 367
S +N + L DL ++E + L +L L+GN + P G
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 368 ---TDLCVSSNSPLPSLISMR---LGNNHLKG-KLPEWLSQLENLVELTLSYNLLQ 416
T L + P+ LI+++ + +N + KLP + S L NLV + LSYN +Q
Sbjct: 106 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 161
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 23/129 (17%)
Query: 223 TSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGN- 281
+S +DLS N L N S L ++DLS C++ + L +L L L GN
Sbjct: 27 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 86
Query: 282 ---------------NNLSGSCSQLFR------GSWKKIQILNFASNKLHG-KLPSSVAN 319
NL ++L G ++ LN A N +H KLP+ +N
Sbjct: 87 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 146
Query: 320 MTSLTNFDL 328
+T+L + DL
Sbjct: 147 LTNLVHVDL 155
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Query: 668 LKVLDLSYSSLSGVIP-ASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
L+ LD +S+L V ++ L +L L ++ + F LTSL TL + N F
Sbjct: 396 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 455
Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
N S + L L L L LQ+L+++ NNL
Sbjct: 456 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 3/178 (1%)
Query: 613 ISGSMP-NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVL 671
+ S+P N +L++ N + + ++ L+++ LS+N L L
Sbjct: 29 VPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTL 88
Query: 672 DLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIP 731
+L + L+ V + L++L+ L L NN + +F + SL LDLG + I
Sbjct: 89 ELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYIS 148
Query: 732 SLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAM 789
G V LR L+L +IP+ L+ L L+ L+L+ N L PGS L ++
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLK-DIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSL 204
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 27/108 (25%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
L+ L+L +L + +L L RL+ L L+ N+L P SFQ LTSL L L
Sbjct: 158 LRYLNLGMCNLKDI--PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL------ 209
Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
+ ++ ++ NAF +L SL+ L+L+ NNL
Sbjct: 210 -----------MHAQVATIERNAF--------DDLKSLEELNLSHNNL 238
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 88/197 (44%), Gaps = 13/197 (6%)
Query: 173 LKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSL 232
L+HL + ++ +LV +G LP+L L L LT T L+ L L
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEY-LSKLRELWLRN 116
Query: 233 NHFNSLFPNWLVN-ISTLVYVDLSDCDLYGRI-PIGFGELPNLQYLSLAGNNNLSG--SC 288
N S+ P++ N + +L +DL + I F L NL+YL+L G NL +
Sbjct: 117 NPIESI-PSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL-GMCNLKDIPNL 174
Query: 289 SQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLK 348
+ L R ++ L + N+L P S +TSL L +V ++ L L+
Sbjct: 175 TALVR-----LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 349 EFDLSGNNLTGSLPEIL 365
E +LS NNL SLP L
Sbjct: 230 ELNLSHNNLM-SLPHDL 245
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 31/222 (13%)
Query: 91 SDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVP-SSLGNLHRLQY 149
SD + L +LDLSFN I F+G LE LQ+L+ + V S+ +L +L Y
Sbjct: 371 SDLGTNSLRHLDLSFNG-AIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428
Query: 150 FDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVC- 208
D+S + D + GL SL L M S + + N NLT L LS C
Sbjct: 429 LDISYTNTKIDFDGI--FLGLTSLNTLKM--AGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484
Query: 209 ------GLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGR 262
G+ ++ + +N++ +L L +H+N L+ ++STL DC + R
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-----SLSTL------DCS-FNR 532
Query: 263 IPIGFGELPN----LQYLSLAGNNNLSGSCSQLFRGSWKKIQ 300
I G L + L + +L NN+++ C W K Q
Sbjct: 533 IETSKGILQHFPKSLAFFNLT-NNSVACICEHQKFLQWVKEQ 573
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYS 676
+PN+ + + ++ K+P I + IDLS N N + L+ LDLS
Sbjct: 11 VPNITYQCM--DQKLSKVPDDIPSST--KNIDLSFNPLKILKSYSFSNFSELQWLDLSRC 66
Query: 677 SLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGN 736
+ + + L L +L L N + P SF LTSLE L + + + S
Sbjct: 67 EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIG 125
Query: 737 GFVGLRILSLRSN-AFSGEIPSKLSNLSSLQVLDLAEN 773
+ L+ L++ N S ++P+ SNL++L +DL+ N
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 119 SLENLQYLNLSEAG--FTGVVPSSLGNLHRLQYFDVSAE-LFALSADSLDWLTGLVSLKH 175
+L +L YL+LS F+G S + L++ D+S +SA+ GL L+H
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN----FMGLEELQH 403
Query: 176 LAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHF 235
L L V +E+ L +L L L +S I + LTS L ++ N F
Sbjct: 404 LDFQHSTLKRV-TEFSAFL-SLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSF 460
Query: 236 -NSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQYLSLAGNN 282
++ N N + L ++DLS C L +I G F L LQ L+++ NN
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQL-EQISWGVFDTLHRLQLLNMSHNN 508
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
N T L LDLS L + L RLQ L++++N L S + L SL TLD
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530
Query: 724 NR 725
NR
Sbjct: 531 NR 532
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 316 SVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQG-------- 367
S +N + L DL ++E + L +L L+GN + P G
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 368 ---TDLCVSSNSPLPSLISMR---LGNNHLKG-KLPEWLSQLENLVELTLSYNLLQ 416
T L + P+ LI+++ + +N + KLP + S L NLV + LSYN +Q
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 23/129 (17%)
Query: 223 TSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGN- 281
+S +DLS N L N S L ++DLS C++ + L +L L L GN
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 282 ---------------NNLSGSCSQLFR------GSWKKIQILNFASNKLHG-KLPSSVAN 319
NL ++L G ++ LN A N +H KLP+ +N
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 320 MTSLTNFDL 328
+T+L + DL
Sbjct: 152 LTNLVHVDL 160
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Query: 668 LKVLDLSYSSLSGVIP-ASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRF 726
L+ LD +S+L V ++ L +L L ++ + F LTSL TL + N F
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 727 SGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
N S + L L L L LQ+L+++ NNL
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 18/191 (9%)
Query: 591 PIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLS 650
P+ +++ L +S NH IP N+ S L+ L + NR+ G ++ + I++
Sbjct: 100 PLRKLQKLYISKNHLVE-IPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155
Query: 651 RNXXXXXXXXX-XXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS 709
N + L L +S + L+G IP L + L LHL++NK+
Sbjct: 156 GNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPET--LNELHLDHNKIQAIELED 212
Query: 710 FQNLTSLETLDLGNNRFSGNIPSLLGNGFVG----LRILSLRSNAFSGEIPSKLSNLSSL 765
+ L L LG+N+ ++ NG + LR L L +N S +P+ L +L L
Sbjct: 213 LLRYSKLYRLGLGHNQIR-----MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266
Query: 766 QVLDLAENNLT 776
QV+ L NN+T
Sbjct: 267 QVVYLHTNNIT 277
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 670 VLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGN 729
+LDL + +S + L L +L L NNK++ +F L L+ L + N
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E 116
Query: 730 IPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQV 767
IP L + V LRI R + S L N++ +++
Sbjct: 117 IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 688 QLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLR 747
+L +L+ ++ +NNK+T +F+ + + + L +NR N+ + G L+ L LR
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113
Query: 748 SNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMA 790
SN + LSS+++L L +N +T PG+ L +++
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 6/175 (3%)
Query: 587 PIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQV 646
P +P EL L+NN F+ I +P L ++ S N++T G+ +
Sbjct: 27 PEHIPQYTAEL-RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85
Query: 647 IDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNL 706
I L+ N LK L L + ++ V S L+ ++ L L +N++T
Sbjct: 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145
Query: 707 PSSFQNLTSLETLDLGNNRFSGNIP-SLLGNGFVGLRILS----LRSNAFSGEIP 756
P +F L SL TL+L N F+ N + LG RI++ + F EIP
Sbjct: 146 PGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIP 200
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
L+ ++ S + ++ + + + + + L +N+L F+ L SL+TL L +NR
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-- 116
Query: 728 GNIPSLLGNGFVGL---RILSLRSNAFSGEIPSKLSNLSSLQVLDLAEN 773
I + + F+GL R+LSL N + P L SL L+L N
Sbjct: 117 --ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 8/147 (5%)
Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFL 668
+P + + NL L + N+L G ++ L ++L+ N T L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
LDLSY+ L + +LT+L+ L L N+L F LTSL+ + L +N +
Sbjct: 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219
Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEI 755
P G+R LS N SG +
Sbjct: 220 TCP--------GIRYLSEWINKHSGVV 238
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 3/165 (1%)
Query: 617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYS 676
+PN+ +L++ GN+L ++ E+ L + L+ N T LK L L +
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 677 SLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGN 736
L + +LT L L+L +N+L F LT+L LDL N+ +P + +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFD 178
Query: 737 GFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPG 781
L+ L L N L+SLQ + L +N + PG
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 60/151 (39%), Gaps = 38/151 (25%)
Query: 266 GFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTN 325
G LPN++YL+L G NKLH S++ +T+LT
Sbjct: 58 GIQYLPNVRYLALGG--------------------------NKLHD--ISALKELTNLTY 89
Query: 326 FDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMR 385
L +++ +L LKE L N L SLP+ L +L +
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPD---------GVFDKLTNLTYLN 139
Query: 386 LGNNHLKGKLPEWLSQLENLVELTLSYNLLQ 416
L +N L+ +L NL EL LSYN LQ
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 10/169 (5%)
Query: 587 PIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQV 646
P +P + LDL N +P + + +L L + GN+L G ++ L
Sbjct: 23 PTGIP-AQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80
Query: 647 IDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNL 706
++LS N T LK L L+ + L + +LT+L+ L L N+L
Sbjct: 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140
Query: 707 PSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEI 755
F LTSL+ + L +N + P G+R LS N SG +
Sbjct: 141 DGVFDRLTSLQYIWLHDNPWDCTCP--------GIRYLSEWINKHSGVV 181
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 682 IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGL 741
I A++ + L L+LN N LT LP+ +NL++L LDL +NR + +P+ LG+ F L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCF-QL 295
Query: 742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
+ N + +P + NL +LQ L + N L
Sbjct: 296 KYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPL 328
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 741 LRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVG---DLKAMAHVQNIVK 797
L L L N+ + E+P+++ NLS+L+VLDL+ N LT S+P +G LK N+V
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 798 YL 799
L
Sbjct: 307 TL 308
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 200 LTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDL 259
LT L+L+ LT I NL++ VLDLS N SL P L + L Y D ++
Sbjct: 249 LTRLYLNGNSLTELPAEIK--NLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFD-NM 304
Query: 260 YGRIPIGFGELPNLQYLSLAGN 281
+P FG L NLQ+L + GN
Sbjct: 305 VTTLPWEFGNLCNLQFLGVEGN 326
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 681 VIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVG 740
++P L L + L+NN+++ SF N+T L TL L NR IP +G
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKS 103
Query: 741 LRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
LR+LSL N S ++LS+L L + N L
Sbjct: 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 623 LSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVI 682
L + GN+ T +P + + L +IDLS N N T L L LSY+ L +
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 683 PASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
P + L L+ L L+ N ++ +F +L++L L +G N
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
N L ++DLS + +S + S +T+L +L L+ N+L P +F L SL L L
Sbjct: 52 NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111
Query: 724 NRFSGNIPSLLGNGFVGLRILSLRSN 749
N S +P N L L++ +N
Sbjct: 112 NDISV-VPEGAFNDLSALSHLAIGAN 136
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Query: 617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYS 676
+PN+ +L++ GN+L ++ E+ L + L+ N T LK L L +
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 677 SLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGN 736
L + +LT L L+L +N+L F LT+L LDL NN+ +P + +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFD 178
Query: 737 GFVGLRILSLRSNAFSGEIPSKLSNLSSL 765
L+ LSL N L+SL
Sbjct: 179 KLTQLKQLSLNDNQLKSVPDGVFDRLTSL 207
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%)
Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSY 675
+ NL +L ++GN+L G ++ L+ + L N T L L L +
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH 142
Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
+ L + +LT L L L+NN+L F LT L+ L L +N+
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%)
Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFL 668
+P + + NL L + N+L G ++ L + L N T L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNL 159
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
LDL + L + +LT+L+ L LN+N+L F LTSL + L NN
Sbjct: 160 TRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 84/217 (38%), Gaps = 39/217 (17%)
Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXX 657
L+L N F G P S+ L F S G ++ ++ L+ +DLSRN
Sbjct: 309 LELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLSFK 362
Query: 658 XXXXXXN--CTFLKVLDLSYSSLSGVIPAS-----LGQLTRLQSLHLNNNKLTG------ 704
+ T LK LDLS++ GVI S L QL L H N +++
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 705 ----------------NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRS 748
F L+SLE L + N F N + L L L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 749 NAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD 785
P+ ++LSSLQVL++A N L S+P + D
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFD 515
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 7/148 (4%)
Query: 590 LPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDL 649
L + ++E LD +++ ++ S+ NLI+L +S G + L+V+ +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 650 SRNXXXXX----XXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGN 705
+ N N TFL DLS L + P + L+ LQ L++ +N+L
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFL---DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Query: 706 LPSSFQNLTSLETLDLGNNRFSGNIPSL 733
F LTSL+ + L N + + P +
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCPRI 537
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 96 SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA- 154
S LE L ++ N+F + +P+ L NL +L+LS+ + P++ +L LQ ++++
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 155 ELFALSADSLDWLTGL 170
+L ++ D LT L
Sbjct: 505 QLKSVPDGIFDRLTSL 520
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 103/454 (22%), Positives = 174/454 (38%), Gaps = 130/454 (28%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRL---------- 147
L+ L+++ N +PE+ +L NL++L+LS + + L LH++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 148 ----------QYFDVSAELFAL--SADSLDWL-TGLVSLKHLAMNRVDLSLVGSEWLGIL 194
+ ++ L + DSL+ + T + L L ++R+ LG
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL--------VLGEF 237
Query: 195 KNLPNLTELHLS----VCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTL- 249
+N NL + S +C LT I L A LD L+ LF N L N+S+
Sbjct: 238 RNEGNLEKFDKSALEGLCNLT-----IEEFRL---AYLDYYLDDIIDLF-NCLTNVSSFS 288
Query: 250 ------------------VYVDLSDCDLYGRIPI------------------GFGE--LP 271
+++L +C +G+ P F E LP
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347
Query: 272 NLQYLSLAGNN-NLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDL-- 328
+L++L L+ N + G CSQ G+ ++ L+ + N + + S+ + L + D
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQH 405
Query: 329 --FDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRL 386
+ E + S+ L YL D+S + + I G L SL +++
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYL---DISHTHTRVAFNGIFNG----------LSSLEVLKM 452
Query: 387 -GNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASXXXXXXXXXXXXXXXQLNGTLPE 445
GN+ + LP+ ++L NL L LS QL P
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLS------------------------QCQLEQLSPT 488
Query: 446 TLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLK 479
SL L VL+++SN L + I F RL+ L+
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGI-FDRLTSLQ 521
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 91 SDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLG-NLHRLQY 149
SD + L+YLDLSFN + FLG LE L++L+ + + S+ +L L Y
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMS-SNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 150 FDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCG 209
D+S ++ + + GL SL+ L M S + I L NLT L LS C
Sbjct: 426 LDISHTHTRVAFNGI--FNGLSSLEVLKM--AGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 210 LTGSITSITPVN-LTSPAVLDLSLNHFNSL 238
L S T N L+S VL+++ N S+
Sbjct: 482 LEQ--LSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
L+VLDLS + + + L+ L +L L N + +F L+SL+ L +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 728 G--NIPSLLGNGFVGLRILSLRSNAF-SGEIPSKLSNLSSLQVLDLAENNL 775
N P +G+ L+ L++ N S ++P SNL++L+ LDL+ N +
Sbjct: 114 SLENFP--IGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSY 675
S P L L +S + G+ + L + L+ N + L+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTG-NLPSSFQNLTSLETLDLGNNR 725
++L+ + +G L L+ L++ +N + LP F NLT+LE LDL +N+
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 639 GEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
G + +L +DLS N L VLD+S++ L+ + +L L LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
N+L P LE L L NN+ + +P+ L NG L L L+ N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 639 GEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
G + +L +DLS N L VLD+S++ L+ + +L L LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
N+L P LE L L NN+ + +P+ L NG L L L+ N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 639 GEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
G + +L +DLS N L VLD+S++ L+ + +L L LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
N+L P LE L L NN+ + +P+ L NG L L L+ N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 639 GEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
G + +L +DLS N L VLD+S++ L+ + +L L LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
N+L P LE L L NN+ + +P+ L NG L L L+ N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 639 GEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
G + +L +DLS N L VLD+S++ L+ + +L L LQ L+L
Sbjct: 75 GTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
N+L P LE L L NN + +P+ L NG L L L+ N+
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 639 GEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
G + +L +DLS N L VLD+S++ L+ + +L L LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
N+L P LE L L NN + +P+ L NG L L L+ N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 639 GEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
G + +L +DLS N L VLD+S++ L+ + +L L LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
N+L P LE L L NN + +P+ L NG L L L+ N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 639 GEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
G + +L +DLS N L VLD+S++ L+ + +L L LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
N+L P LE L L NN + +P+ L NG L L L+ N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 639 GEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
G + +L +DLS N L VLD+S++ L+ + +L L LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
N+L P LE L L NN + +P+ L NG L L L+ N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 639 GEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698
G + +L +DLS N L VLD+S++ L+ + +L L LQ L+L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
N+L P LE L L NN + +P+ L NG L L L+ N+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNI 730
+ L +++ + P + +L+ + L+NN+++ P +FQ L SL +L L N+ + +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 731 PSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA-- 788
P L G L++L L +N + +L +L +L L +N L G+ L+A
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 789 -MAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPR 826
M QN ++ Y N I T G+ +PR
Sbjct: 156 TMHLAQNPFICDCHLKWLADYLHTN-PIETSGARCTSPR 193
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNI 730
+ L +++ + P + +L+ + L+NN+++ P +FQ L SL +L L N+ + +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 731 PSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA-- 788
P L G L++L L +N + +L +L +L L +N L G+ L+A
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 789 -MAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPR 826
M QN ++ Y N I T G+ +PR
Sbjct: 156 TMHLAQNPFICDCHLKWLADYLHTN-PIETSGARCTSPR 193
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 689 LTRLQSLHLNNNKLTGNLPSSF--QNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSL 746
L RLQ+L L N L + +N++SLETLD+ N + + + +L+L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 747 RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAM 789
SN +G + L ++VLDL NN SIP V L+A+
Sbjct: 436 SSNMLTGSVFRCLP--PKVKVLDL-HNNRIMSIPKDVTHLQAL 475
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLH 145
L +LDLSFN F+ +P+ + G+L L +L LS A F + + +LH
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
+KVLDL + + IP + L LQ L++ +N+L F LTSL+ + L +N +
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEI 755
P G+R LS N SG +
Sbjct: 511 CTCP--------GIRYLSEWINKHSGVV 530
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 114/279 (40%), Gaps = 33/279 (11%)
Query: 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSL 678
N+ L+++ N+L P + L ++D N LKVL+L ++ L
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 679 SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGF 738
S + + T L L L +N + + F+N +L LDL +N S + LG G
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS---TKLGTGV 142
Query: 739 VGL----------RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPG---SVGD 785
+IL+LRS L N SSL+ LDL+ N L PG ++G
Sbjct: 143 QLENLQELLLAKNKILALRSEELEF-----LGN-SSLRKLDLSSNPLKEFSPGCFQTIGK 196
Query: 786 LKAM--------AHVQNIVKYLLFGR-YRGIYYEENLVINTKGSSKDTPRLFHF--IDLS 834
L A+ H+ + + L + + N ++ T S+ + + +DLS
Sbjct: 197 LFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLS 256
Query: 835 GNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGL 873
NNLH + L L L+L N+I P + GL
Sbjct: 257 YNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGL 295
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 16/126 (12%)
Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT--GNLPSSFQNLTSLETLDLGN 723
T LK L LS++ +S + P L LT+L+ L +N N+L +PS+ L L L N
Sbjct: 63 TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSA-----CLSRLFLDN 115
Query: 724 NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSV 783
N + SL+ L ILS+R+N + L LS L+VLDL N +T + G +
Sbjct: 116 NELR-DTDSLI--HLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGL 168
Query: 784 GDLKAM 789
LK +
Sbjct: 169 TRLKKV 174
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 19/193 (9%)
Query: 591 PIVEIELLDLSNNHFSGPIPQNISGSMPN-LIFLSVSGNRLTGKIPGSIGEMQLLQVIDL 649
P+V++E L LS N + + MP L L V N +T + + V++L
Sbjct: 98 PLVKLERLYLSKNQL-----KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 650 SRNXXXXX-----XXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
N +++++ D + +++ +P SL +L HL+ NK+T
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL------HLDGNKITK 206
Query: 705 NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSS 764
+S + L +L L L N S L N LR L L +N ++P L++
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLV-KVPGGLADHKY 264
Query: 765 LQVLDLAENNLTG 777
+QV+ L NN++
Sbjct: 265 IQVVYLHNNNISA 277
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 670 VLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGN 729
+LDL + ++ + L L +L L NNK++ P +F L LE L L N+
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 730 IPSLLGNGFVGLR-----ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL--TGSIPGS 782
+P + LR I +R + F+G L+ + V++L N L +G G+
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNG--------LNQMIVVELGTNPLKSSGIENGA 166
Query: 783 VGDLKAMAHVQ 793
+K +++++
Sbjct: 167 FQGMKKLSYIR 177
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 19/193 (9%)
Query: 591 PIVEIELLDLSNNHFSGPIPQNISGSMPN-LIFLSVSGNRLTGKIPGSIGEMQLLQVIDL 649
P+V++E L LS N + + MP L L V N +T + + V++L
Sbjct: 98 PLVKLERLYLSKNQL-----KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 650 SRNXXXXX-----XXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG 704
N +++++ D + +++ +P SL +L HL+ NK+T
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL------HLDGNKITK 206
Query: 705 NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSS 764
+S + L +L L L N S L N LR L L +N ++P L++
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLV-KVPGGLADHKY 264
Query: 765 LQVLDLAENNLTG 777
+QV+ L NN++
Sbjct: 265 IQVVYLHNNNISA 277
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 670 VLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGN 729
+LDL + ++ + L L +L L NNK++ P +F L LE L L N+
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 730 IPSLLGNGFVGLR-----ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL--TGSIPGS 782
+P + LR I +R + F+G L+ + V++L N L +G G+
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNG--------LNQMIVVELGTNPLKSSGIENGA 166
Query: 783 VGDLKAMAHVQ 793
+K +++++
Sbjct: 167 FQGMKKLSYIR 177
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 4/177 (2%)
Query: 576 DVDFRSNLLEG-PIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKI 634
+VD + L+ P +P + E LDL + + G + L +L++ N+L
Sbjct: 18 EVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLS 75
Query: 635 PGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS 694
G ++ L + L+ N + T L L L + L + +LT+L+
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 695 LHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
L LN N+L +F LT+L+TL L N+ ++P + L+ ++L N F
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 10/177 (5%)
Query: 122 NLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-ELFALSADSLDWLTGLVSLKHLAMNR 180
+ + L+L G + ++ L +L + ++ +L LSA D LT L +L LA N+
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL-GLANNQ 94
Query: 181 VDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFP 240
+ S LG+ +L L +L+L L S+ S LT L L+ N S+
Sbjct: 95 L-----ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPA 148
Query: 241 NWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
++ L + LS L +P G F L LQ ++L GN C L+ W
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW 204
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 4/177 (2%)
Query: 576 DVDFRSNLLEG-PIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKI 634
+VD + L+ P +P + E LDL + + G + L +L++ N+L
Sbjct: 18 EVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLS 75
Query: 635 PGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS 694
G ++ L + L+ N + T L L L + L + +LT+L+
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 695 LHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
L LN N+L +F LT+L+TL L N+ ++P + L+ ++L N F
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 10/177 (5%)
Query: 122 NLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSA-ELFALSADSLDWLTGLVSLKHLAMNR 180
+ + L+L G + ++ L +L + ++ +L LSA D LT L +L LA N+
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL-GLANNQ 94
Query: 181 VDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFP 240
+ S LG+ +L L +L+L L S+ S LT L L+ N S+
Sbjct: 95 L-----ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPA 148
Query: 241 NWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQYLSLAGNNNLSGSCSQLFRGSW 296
++ L + LS L +P G F L LQ ++L GN C L+ W
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQW 204
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 21/209 (10%)
Query: 589 PLPIVEIELLDLSNNHFSGPIPQN----ISGSMPNLIFLSVSGN------RLTGKIPGSI 638
P I LDLS N F + + I+G+ + LS S N K P +
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
Query: 639 G----EMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS 694
E ++ DLS++ + T L+ L L+ + ++ + + LT L
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327
Query: 695 LHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVG---LRILSLRSNAF 751
L+L+ N L F+NL LE LDL N +I +L F+G L+ L+L +N
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYN----HIRALGDQSFLGLPNLKELALDTNQL 383
Query: 752 SGEIPSKLSNLSSLQVLDLAENNLTGSIP 780
L+SLQ + L N S P
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 647 IDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNL 706
++LS+N N L+VLDLSY+ + + S L L+ L L+ N+L
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
Query: 707 PSSFQNLTSLETLDLGNNRFSGNIPSL 733
F LTSL+ + L N + + P +
Sbjct: 388 DGIFDRLTSLQKIWLHTNPWDCSCPRI 414
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 153 SAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTG 212
+++FAL T L L LA N ++ + W L +L +L+LS G
Sbjct: 284 KSKIFALLKSVFSHFTDLEQLT-LAQNEINKIDDNAFW-----GLTHLLKLNLSQ-NFLG 336
Query: 213 SITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELP 271
SI S NL VLDLS NH +L + + L + L D + +P G F L
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL-DTNQLKSVPDGIFDRLT 395
Query: 272 NLQYLSLAGN 281
+LQ + L N
Sbjct: 396 SLQKIWLHTN 405
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 11/192 (5%)
Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFL 668
IP ++ +M +L +S N++T G + LQV+ L + + L
Sbjct: 46 IPSGLTAAMKSL---DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 102
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKL-TGNLPSSFQNLTSLETLDLGNNRFS 727
+ LDLS + LS + + G L+ L+ L+L N T + S F NLT+L+TL +GN
Sbjct: 103 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 162
Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLK 787
I + G L L +++ + L ++ + ++LT + S L+
Sbjct: 163 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI-------HHLTLHLSESAFLLE 215
Query: 788 AMAHVQNIVKYL 799
A + + V+YL
Sbjct: 216 IFADILSSVRYL 227
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 27/203 (13%)
Query: 668 LKVLDLSYSSL--SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
L+ LDLS++ + S L L+ LQ+L+L++N+ G +F+ LE LDL R
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 726 FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD 785
N P L++L+L L+ L L+ L+L N+ G++
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQD---GTITK 465
Query: 786 LKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFH------FIDLSGNNLH 839
+ V ++ E L++++ G + FH +DLS N+L
Sbjct: 466 TNLLQTVGSL---------------EVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLT 510
Query: 840 GDFPTQLTKLVGLVVLNLSRNHI 862
D L+ L G + LNL+ N I
Sbjct: 511 CDSIDSLSHLKG-IYLNLAANSI 532
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 47/213 (22%)
Query: 672 DLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIP 731
D+S + L G+ S+ +SL+L ++ + ++FQ T L+ LDL G +P
Sbjct: 239 DISSAMLKGLCEMSV------ESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LP 291
Query: 732 SLLGNGFVGLRILSLRSNAF-------SGEIPS------------------KLSNLSSLQ 766
S + G L+ L L N F + PS L L +LQ
Sbjct: 292 SGM-KGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQ 350
Query: 767 VLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPR 826
LDL+ N++ S S+ LK ++H+Q + + + E L + ++ + K+ P+
Sbjct: 351 TLDLSHNDIEASDCCSL-QLKNLSHLQTL----------NLSHNEPLGLQSQ-AFKECPQ 398
Query: 827 LFHFIDLSGNNLHGDFPTQ-LTKLVGLVVLNLS 858
L +DL+ LH + P L L VLNL+
Sbjct: 399 L-ELLDLAFTRLHINAPQSPFQNLHFLQVLNLT 430
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 45/143 (31%)
Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
L L +L+SL+L NNK+T + LT L+TL L +N+ S +P
Sbjct: 130 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-------------- 173
Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY- 804
L+ L+ LQ L L++N+ + DL+A+A ++N+ LF +
Sbjct: 174 -------------LAGLTKLQNLYLSKNH--------ISDLRALAGLKNLDVLELFSQEC 212
Query: 805 --RGIYYEENLVI-----NTKGS 820
+ I ++ NLV+ NT GS
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGS 235
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 11/192 (5%)
Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFL 668
IP ++ +M +L +S N++T G + LQV+ L + + L
Sbjct: 20 IPSGLTAAMKSL---DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKL-TGNLPSSFQNLTSLETLDLGNNRFS 727
+ LDLS + LS + + G L+ L+ L+L N T + S F NLT+L+TL +GN
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136
Query: 728 GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLK 787
I + G L L +++ + L ++ + ++LT + S L+
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI-------HHLTLHLSESAFLLE 189
Query: 788 AMAHVQNIVKYL 799
A + + V+YL
Sbjct: 190 IFADILSSVRYL 201
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 670 VLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGN 729
+D S SL+ V G T Q L+L +N++T P F LT L LDL NN+ +
Sbjct: 13 TVDCSGKSLASV---PTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV- 68
Query: 730 IPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAEN 773
+P+ + + L LSL N NL SL + L N
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
T +VL L + ++ + P +LT+L L L+NN+LT F LT L L L +N+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 726 F 726
Sbjct: 90 L 90
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 666 TFLKVLDLSYSSLSGVIPASL-GQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
T L LDL + L+ V+PA + +LT+L L LN+N+L +F NL SL + L NN
Sbjct: 54 TQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Query: 725 RF 726
+
Sbjct: 113 PW 114
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 45/143 (31%)
Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
L L +L+SL+L NNK+T + LT L+TL L +N+ S +P
Sbjct: 128 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-------------- 171
Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY- 804
L+ L+ LQ L L++N+ + DL+A+A ++N+ LF +
Sbjct: 172 -------------LAGLTKLQNLYLSKNH--------ISDLRALAGLKNLDVLELFSQEC 210
Query: 805 --RGIYYEENLVI-----NTKGS 820
+ I ++ NLV+ NT GS
Sbjct: 211 LNKPINHQSNLVVPNTVKNTDGS 233
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 102/247 (41%), Gaps = 48/247 (19%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
+K LDLS + ++ + + L + LQ+L L +N + SF +L SLE LDL N S
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 728 GNIPSLLGNGFVGLRILSLRSNAFS--GEIPSKLSNLSSLQVL--------------DLA 771
N+ S L L+L N + GE S S+L+ LQ+L D A
Sbjct: 114 -NLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 772 ENNLTGSIPGSVGDL-----KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS----K 822
+ DL K++ +QN V +L+ + I E V T +
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQN-VSHLILHMKQHILLLEIFVDVTSSVECLELR 230
Query: 823 DTP-RLFHFIDLS---GNNLHGDFPTQ---------------LTKLVGLVVLNLSRNHIG 863
DT FHF +LS N+L F + L ++ GL+ L SRN +
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290
Query: 864 GQIPENI 870
+P+ I
Sbjct: 291 S-VPDGI 296
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 45/143 (31%)
Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
L L +L+SL+L NNK+T + LT L+TL L +N+ S +P
Sbjct: 150 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-------------- 193
Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY- 804
L+ L+ LQ L L++N+ + DL+A+A ++N+ LF +
Sbjct: 194 -------------LAGLTKLQNLYLSKNH--------ISDLRALAGLKNLDVLELFSQEC 232
Query: 805 --RGIYYEENLVI-----NTKGS 820
+ I ++ NLV+ NT GS
Sbjct: 233 LNKPINHQSNLVVPNTVKNTDGS 255
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 670 VLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGN 729
+D S SL+ V G T Q L+L +N++T P F LT L LDL NN+ +
Sbjct: 21 TVDCSGKSLASV---PTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV- 76
Query: 730 IPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAEN 773
+P+ + + L LSL N NL SL + L N
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
T +VL L + ++ + P +LT+L L L+NN+LT F LT L L L +N+
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 726 F 726
Sbjct: 98 L 98
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 666 TFLKVLDLSYSSLSGVIPASL-GQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
T L LDL + L+ V+PA + +LT+L L LN+N+L +F NL SL + L NN
Sbjct: 62 TQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 87/218 (39%), Gaps = 54/218 (24%)
Query: 108 FNDIPIPEFLGS---LENLQYLNLSEAG----------FTGV------------VPSSLG 142
+P+P+F L +LQ+ + AG F G+ +P+S+
Sbjct: 88 LRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIA 147
Query: 143 NLHRLQYFDVSA--ELFAL-----SADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGI-- 193
+L+RL+ + A EL L S D+ GLV+L+ L + EW GI
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL----------EWTGIRS 197
Query: 194 ----LKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSL--FPNWLVNIS 247
+ NL NL L + ++++ P P + +L L +L +P +
Sbjct: 198 LPASIANLQNLKSLKIR----NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 248 TLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLS 285
L + L DC +P+ L L+ L L G NLS
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPS 732
L+ + ++ + P L LQ L+ N+NKLT F LT L LDL +N IP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPR 98
Query: 733 LLGNGFVGLRILSLRSNAFSGEI 755
+ L + L +N + E
Sbjct: 99 GAFDNLKSLTHIYLYNNPWDCEC 121
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 40/155 (25%)
Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
T + ++ +S+ IP T Q L LNNN++T P F +L +L+ L +N+
Sbjct: 15 TLVNCQNIRLASVPAGIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK 68
Query: 726 FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD 785
+ IP+ + L+ L LDL +N+L G+ +
Sbjct: 69 LTA-IPTGV------------------------FDKLTQLTQLDLNDNHLKSIPRGAFDN 103
Query: 786 LKAMAHVQNIVKYLLFGRY----RGIYYEENLVIN 816
LK++ H+ YL + R I Y N V +
Sbjct: 104 LKSLTHI-----YLYNNPWDCECRDIMYLRNWVAD 133
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 45/143 (31%)
Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
L L +L+SL+L NNK+T + LT L+TL L +N+ S +P
Sbjct: 130 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-------------- 173
Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY- 804
L+ L+ LQ L L++N+++ DL+A+A ++N+ LF +
Sbjct: 174 -------------LAGLTKLQNLYLSKNHIS--------DLRALAGLKNLDVLELFSQEC 212
Query: 805 --RGIYYEENLVI-----NTKGS 820
+ I ++ NLV+ NT GS
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGS 235
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 43/206 (20%)
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
+ L+L +++ + + L L+ L L N + +F L SL TL+L +N +
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPS-KLSNLSSLQVLDLAENNLTGSIPGSVGDLK 787
IPS LR L LR+N IPS + + SL LDL G+LK
Sbjct: 138 -IPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDL-------------GELK 182
Query: 788 AMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLT 847
+ +Y+ G + G++ N K +++L N+ D P LT
Sbjct: 183 KL-------EYISEGAFEGLF-------NLK-----------YLNLGMCNI-KDMP-NLT 215
Query: 848 KLVGLVVLNLSRNHIGGQIPENISGL 873
LVGL L +S NH P + GL
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGL 241
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 5/181 (2%)
Query: 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFL 668
+PQ I N +L++ N + + + L+V+ L RN L
Sbjct: 69 VPQGIPS---NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
L+L + L+ + + L++L+ L L NN + +F + SL LDLG +
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185
Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA 788
I G L+ L+L ++P+ L+ L L+ L+++ N+ PGS L +
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 789 M 789
+
Sbjct: 244 L 244
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 61/306 (19%)
Query: 120 LENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179
L NL+YLNL+ T + P L+ LV L +L +
Sbjct: 65 LTNLEYLNLNGNQITDISP----------------------------LSNLVKLTNLYIG 96
Query: 180 RVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPV-NLTSPAVLDLSLNH-FNS 237
++ + + L+NL NL EL+L+ +I+ I+P+ NLT L+L NH +
Sbjct: 97 TNKITDISA-----LQNLTNLRELYLN----EDNISDISPLANLTKXYSLNLGANHNLSD 147
Query: 238 LFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWK 297
L P L N + L Y+ +++ + PI L +L LSL N N S L S
Sbjct: 148 LSP--LSNXTGLNYLTVTESKVKDVTPI--ANLTDLYSLSL--NYNQIEDISPL--ASLT 199
Query: 298 KIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNL 357
+ N++ P VAN T L + + + K+ P +A L L ++ N +
Sbjct: 200 SLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255
Query: 358 T--GSLPEILQGTDLCVSSN--------SPLPSLISMRLGNNHLKGKLPEWLSQLENLVE 407
+ ++ ++ + L V SN + L L S+ L NN L + E + L NL
Sbjct: 256 SDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTT 315
Query: 408 LTLSYN 413
L LS N
Sbjct: 316 LFLSQN 321
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 27/132 (20%)
Query: 664 NCTFLKVLDLSYSSLSGVIP-ASLGQL-------------------TRLQSLHLNNNKLT 703
N T L L L+Y+ + + P ASL L TRL SL + NNK+T
Sbjct: 175 NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKIT 234
Query: 704 GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS 763
P NL+ L L++G N+ S +I ++ L+ L++ SN S S L+NLS
Sbjct: 235 DLSP--LANLSQLTWLEIGTNQIS-DINAV--KDLTKLKXLNVGSNQISD--ISVLNNLS 287
Query: 764 SLQVLDLAENNL 775
L L L N L
Sbjct: 288 QLNSLFLNNNQL 299
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Query: 583 LLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGS-MPNLIFLSVSGNRLTGKIPGSIGEM 641
L E P LP E+L+ S N P QN + S + NLIFL ++ ++ +
Sbjct: 23 LREIPDTLPNT-TEVLEFSFNFL--PTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSH 79
Query: 642 QLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK 701
L I L+ N FLK L L+ + +S + + L L+SLHL +N
Sbjct: 80 HQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNH 139
Query: 702 LTG-NLPSSFQNLTSLETLDLGNN 724
++ NLP +F +L+ LD NN
Sbjct: 140 ISSINLPENFPT-QNLKVLDFQNN 162
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 107/269 (39%), Gaps = 48/269 (17%)
Query: 614 SGSMPNLIFLSVSGN-RLTGKIPGSIGEMQLLQVIDLSRNXXXXX--XXXXXXNCTFLKV 670
+ S P+L L + GN R + +++ LQ +DLS + N L+
Sbjct: 320 AASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQY 379
Query: 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNNRFSGN 729
L+LSY+ G+ + + +L+ L + L P S FQNL L L+L + +
Sbjct: 380 LNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS 439
Query: 730 IPSLLGNGFVGLRILSLRSNAFSGEIPSK---LSNLSSLQVLDLAENNLTGSIPGSVGDL 786
LL G LR L+L+ N+F SK L + SL++L L+ NL + L
Sbjct: 440 NQHLLA-GLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGL 498
Query: 787 KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQL 846
+ + H +DLS N+L GD L
Sbjct: 499 RNVNH---------------------------------------LDLSHNSLTGDSMDAL 519
Query: 847 TKLVGLVVLNLSRNHIGGQIPENISGLHQ 875
+ L GL LN++ N+I P + L Q
Sbjct: 520 SHLKGL-YLNMASNNIRIIPPHLLPALSQ 547
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 41/194 (21%)
Query: 692 LQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751
++S++L ++ + S+F+ T ++ LDL +G +PS + G L+ L L +N+F
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGI-EGMNSLKKLVLNANSF 312
Query: 752 -------SGEIPS------------------KLSNLSSLQVLDLAENNLTGSIPGSVGDL 786
+ PS L L +LQ LDL+ +++ S ++ L
Sbjct: 313 DQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNL-QL 371
Query: 787 KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFP-TQ 845
K + H+Q Y + Y E L + + + K+ P+L +D++ +LH P +
Sbjct: 372 KNLRHLQ----------YLNLSYNEPLGLEDQ-AFKECPQL-ELLDVAFTHLHVKAPHSP 419
Query: 846 LTKLVGLVVLNLSR 859
L L VLNLS
Sbjct: 420 FQNLHLLRVLNLSH 433
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 104/254 (40%), Gaps = 39/254 (15%)
Query: 117 LGSLENLQYLNLS---------------------EAGFTGV---VPSS-LGNLHRLQYFD 151
L +L +LQYLNLS + FT + P S NLH L+ +
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 152 VSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLT 211
+S L S L L GL L+HL + +L+ + +L L LS C L
Sbjct: 431 LSHCLLDTSNQHL--LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLL 488
Query: 212 GSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTL--VYVDLSDCDLYGRIPIGFGE 269
SI L + LDLS NSL + + +S L +Y++++ ++ P
Sbjct: 489 -SIDQQAFHGLRNVNHLDLS---HNSLTGDSMDALSHLKGLYLNMASNNIRIIPPHLLPA 544
Query: 270 LPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLF 329
L ++L+ +N L +CS + +W K + +KL ++ AN SL L
Sbjct: 545 LSQQSIINLS-HNPLDCTCSNIHFITWYKENL-----HKLEDSEETTCANPPSLRGVKLS 598
Query: 330 DKKVEGGIPSSIAR 343
D K+ G + R
Sbjct: 599 DVKLHCGTHMLVPR 612
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
+K LDLS + LS + A L T+L+ L+L++N L L ++L++L TLDL NN
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNN 90
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
+K LDLS + ++ + + L + LQ+L L +N + SF +L SLE LDL N S
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 728 GNIPSLLGNGFVGLRILSLRSNAFS--GEIPSKLSNLSSLQVL 768
N+ S L L+L N + GE S S+L+ LQ+L
Sbjct: 88 -NLSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQIL 128
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGF--TGVVPSSLGNLHRL 147
L++LDLSFN F+ +PI + G++ L++L LS + V+P + N+ ++
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 31/163 (19%)
Query: 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLT--GKIPGSIGEMQLLQVIDLSRNXXX 655
LD SNN + + +N G + L L + N+L KI +M+ LQ +D+S+N
Sbjct: 329 LDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 656 XXXXXXXXNCTF-------------------------LKVLDLSYSSLSGVIPASLGQLT 690
+C++ +KVLDL + + IP + +L
Sbjct: 388 YDEKKG--DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLE 444
Query: 691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSL 733
LQ L++ +N+L F LTSL+ + L N + + P +
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 45/143 (31%)
Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
L L +L+SL+L NNK+T + LT L+TL L +N+ S +P
Sbjct: 127 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-------------- 170
Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY- 804
L+ L+ LQ L L++N+++ DL+A+A ++N+ LF +
Sbjct: 171 -------------LAGLTKLQNLYLSKNHIS--------DLRALAGLKNLDVLELFSQEC 209
Query: 805 --RGIYYEENLVI-----NTKGS 820
+ I ++ NLV+ NT GS
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGS 232
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
+K LDLS + LS + A L T+L+ L+L++N L L ++L++L TLDL NN
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNN 90
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 81/202 (40%), Gaps = 15/202 (7%)
Query: 668 LKVLDLSYSSL--SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
L+ LDLS+ + S L L+ LQSL+L+ N+ +F+ LE LDL R
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 726 FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGD 785
L++L+L + L +LQ L+L N+
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471
Query: 786 LKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ 845
L+ + ++ +V L F I + + ++ + +DLS N L
Sbjct: 472 LQTLGRLEILV--LSFCDLSSI----------DQHAFTSLKMMNHVDLSHNRLTSSSIEA 519
Query: 846 LTKLVGLVVLNLSRNHIGGQIP 867
L+ L G + LNL+ NHI +P
Sbjct: 520 LSHLKG-IYLNLASNHISIILP 540
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 83 GNPYHVVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLG 142
GNP V++ + ++ LDL+ D+ L L NLQ L L T + P L
Sbjct: 94 GNPLKNVSAIAGLQSIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLNQITNISP--LA 148
Query: 143 NLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTE 202
L LQY + + LT L +L L + D + + + L +LPNL E
Sbjct: 149 GLTNLQYLSIGNA-------QVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIE 199
Query: 203 LHL 205
+HL
Sbjct: 200 VHL 202
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 711 QNLTSLETLDLGNNRFSG-------NIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SNL 762
+ L LE LDL +N + P G L IL+L SN F EIP ++ +L
Sbjct: 511 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDL 569
Query: 763 SSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIY 808
L+++DL NNL ++P SV + + N+ K L+ + ++
Sbjct: 570 FELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 614
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEA-----GFTGVVPSSLGN--LHRLQYF 150
LE+L++ N I F G L NL+YL+LS + T SL + LH L
Sbjct: 341 LEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL- 398
Query: 151 DVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLS 206
++ + +D+ WL G + + L +N + L G EW G L N+ E++LS
Sbjct: 399 -TKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQEWRG----LENIFEIYLS 448
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSL 678
N+ L+++ N+L + L +D+ N LKVL+L ++ L
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 679 SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
S + + T L LHL +N + + F +L TLDL +N S
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 711 QNLTSLETLDLGNNRFSG-------NIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SNL 762
+ L LE LDL +N + P G L IL+L SN F EIP ++ +L
Sbjct: 506 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDL 564
Query: 763 SSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIY 808
L+++DL NNL ++P SV + + N+ K L+ + ++
Sbjct: 565 FELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 609
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEA-----GFTGVVPSSLGN--LHRLQYF 150
LE+L++ N I F G L NL+YL+LS + T SL + LH L
Sbjct: 336 LEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL- 393
Query: 151 DVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLS 206
++ + +D+ WL G + + L +N + L G EW G L N+ E++LS
Sbjct: 394 -TKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQEWRG----LENIFEIYLS 443
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSL 678
N+ L+++ N+L + L +D+ N LKVL+L ++ L
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 679 SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
S + + T L LHL +N + + F +L TLDL +N S
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 45/143 (31%)
Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
L L +L+SL+L NNK+T + LT L+TL L +N+ S +P
Sbjct: 125 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-------------- 168
Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY- 804
L+ L+ LQ L L++N+ + DL+A+ ++N+ LF +
Sbjct: 169 -------------LACLTKLQNLYLSKNH--------ISDLRALCGLKNLDVLELFSQEA 207
Query: 805 --RGIYYEENLVI-----NTKGS 820
+ I ++ NLV+ NT GS
Sbjct: 208 LNKPINHQSNLVVPNTVKNTDGS 230
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 711 QNLTSLETLDLGNNRFSG-------NIPSLLGNGFVGLRILSLRSNAFSGEIPSKL-SNL 762
+ L LE LDL +N + P G L IL+L SN F EIP ++ +L
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-DEIPVEVFKDL 559
Query: 763 SSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIY 808
L+++DL NNL ++P SV + + N+ K L+ + ++
Sbjct: 560 FELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEA-----GFTGVVPSSLGN--LHRLQYF 150
LE+L++ N I F G L NL+YL+LS + T SL + LH L
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL- 388
Query: 151 DVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLS 206
++ + +D+ WL G + + L +N + L G EW G L N+ E++LS
Sbjct: 389 -TKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQEWRG----LENIFEIYLS 438
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%)
Query: 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSL 678
N+ L+++ N+L + L +D+ N LKVL+L ++ L
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 679 SGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
S + + T L LHL +N + + F +L TLDL +N S
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
L L +L+SL+L NNK+T + LT L+TL L +N+ S +P G L+ L
Sbjct: 125 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLA---GLTKLQNLY 179
Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDL 770
L N S L+ L +L VL+L
Sbjct: 180 LSKNHISD--LRALAGLKNLDVLEL 202
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 689 LTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS----GNIPSLLGNGFVGLRIL 744
L+ LQ L+LN+N L P F +LT+L L L +NR + ++P+ L IL
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA-------NLEIL 531
Query: 745 SLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775
+ N P +LS VLD+ N
Sbjct: 532 DISRNQLLAPNPDVFVSLS---VLDITHNKF 559
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
LKVL+L+Y+ ++ + + L LQ L+L+ N L S+F L + +DL N +
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 728 GNIPSLLGNGFVGLRILSLRSNA-----FSGEIPSKLSNLSSLQVLDLAENNLTGSI 779
I L+ L LR NA F IP LS +++ L + NLT ++
Sbjct: 352 I-IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF--LSGNKLVTLPKINLTANL 405
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELF 157
L+ L+L++N N I F G L+NLQ LNLS + S+ L ++ Y D+
Sbjct: 292 LKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 158 ALSADS 163
A+ D
Sbjct: 351 AIIQDQ 356
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
L L +L+SL+L NNK+T + LT L+TL L +N+ S +P G L+ L
Sbjct: 148 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLA---GLTKLQNLY 202
Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDL 770
L N S L+ L +L VL+L
Sbjct: 203 LSKNHISD--LRALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
L L +L+SL+L NNK+T + LT L+TL L +N+ S +P G L+ L
Sbjct: 148 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLA---GLTKLQNLY 202
Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDL 770
L N S L+ L +L VL+L
Sbjct: 203 LSKNHISD--LRALAGLKNLDVLEL 225
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
L L +L+SL+L NNK+T + LT L+TL L +N+ S +P G L+ L
Sbjct: 148 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLA---GLTKLQNLY 202
Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDL 770
L N S L+ L +L VL+L
Sbjct: 203 LSKNHISD--LRALAGLKNLDVLEL 225
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 195 KNLPNLTEL-HLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVD 253
++LP+ T L LS L+ TP LT+ L LS NH N + V + L Y+D
Sbjct: 35 QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94
Query: 254 LSDCDLYGRIPIGFGELPNLQYLSLAGNN 282
LS L+ F +L L+ L L N+
Sbjct: 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNH 123
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 45/143 (31%)
Query: 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745
L L +L+SL+L NNK+T + LT L+TL L +N+ +P
Sbjct: 128 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVP-------------- 171
Query: 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY- 804
L+ L+ LQ L L++N+ + DL+A+ ++N+ LF +
Sbjct: 172 -------------LARLTKLQNLYLSKNH--------ISDLRALRGLKNLDVLELFSQEA 210
Query: 805 --RGIYYEENLVI-----NTKGS 820
+ I ++ NLV+ NT GS
Sbjct: 211 LNKPINHQSNLVVPNTVKNTDGS 233
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 666 TFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725
T +VL L + ++ + P +LT+L L L+NN+LT F LT L L L +N+
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 726 FSGNIPSLLGNGFVGLRILS 745
S+ F LR L+
Sbjct: 90 LK----SIPRGAFDNLRSLT 105
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 666 TFLKVLDLSYSSLSGVIPASL-GQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724
T L LDL + L+ V+PA + +LT+L L LN+N+L +F NL SL + L NN
Sbjct: 54 TQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 156 LFALSADSLDWLTGLVSLKHLAMNR---VDLSLVGSEWLG-ILKNLPNLTELHLSVCGLT 211
L + D+ T L +L+ L+ NR VDLSL+ S + + NL + + ++V L
Sbjct: 159 LERIEDDTFQATTSLQNLQ-LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217
Query: 212 GSITSIT----PVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGF 267
S SI PVN+ + L L H N WL+N LV VDLS +L + F
Sbjct: 218 ASHNSINVVRGPVNV---ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 274
Query: 268 GELPNLQYLSLAGN 281
++ L+ L ++ N
Sbjct: 275 VKMQRLERLYISNN 288
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
N L VL L + LS + +L +L ++NN L +FQ TSL+ L L +
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180
Query: 724 NRFSGN----IPSL 733
NR + IPSL
Sbjct: 181 NRLTHVDLSLIPSL 194
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
L+VLDLS + + + L+ L +L L N + +F L+SL+ L +
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 728 G--NIPSLLGNGFVGLRILSLRSNAF-SGEIPSKLSNLSSLQVLDLAENNL 775
N P +G+ L+ L++ N S ++P SNL++L+ LDL+ N +
Sbjct: 115 SLENFP--IGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSY 675
S P L L +S + G+ + L + L+ N + L+ L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTG-NLPSSFQNLTSLETLDLGNNRFSG 728
++L+ + +G L L+ L++ +N + LP F NLT+LE LDL +N+
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRL 147
L+ L+++ N +PE+ +L NL++L+LS + + L LH++
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 39/181 (21%)
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
K LDLS++ L + S LQ L L+ ++ ++Q+L+ L TL L N
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--- 88
Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA 788
I SL AFSG LSSLQ L E NL +G LK
Sbjct: 89 --------------IQSLALGAFSG--------LSSLQKLVAVETNLASLENFPIGHLKT 126
Query: 789 MAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTK 848
+ + V + L ++ Y NL L H +DLS N + + T L
Sbjct: 127 LKELN--VAHNLIQSFKLPEYFSNLT-----------NLEH-LDLSSNKIQSIYCTDLRV 172
Query: 849 L 849
L
Sbjct: 173 L 173
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
L+VLDLS + + + L+ L +L L N + +F L+SL+ L +
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 728 G--NIPSLLGNGFVGLRILSLRSNAF-SGEIPSKLSNLSSLQVLDLAENNL 775
N P +G+ L+ L++ N S ++P SNL++L+ LDL+ N +
Sbjct: 116 SLENFP--IGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSY 675
S P L L +S + G+ + L + L+ N + L+ L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 111
Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTG-NLPSSFQNLTSLETLDLGNNRFSG 728
++L+ + +G L L+ L++ +N + LP F NLT+LE LDL +N+
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRL 147
L+ L+++ N +PE+ +L NL++L+LS + + L LH++
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 39/181 (21%)
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
K LDLS++ L + S LQ L L+ ++ ++Q+L+ L TL L N
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--- 89
Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA 788
I SL AFSG LSSLQ L E NL +G LK
Sbjct: 90 --------------IQSLALGAFSG--------LSSLQKLVAVETNLASLENFPIGHLKT 127
Query: 789 MAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTK 848
+ + V + L ++ Y NL L H +DLS N + + T L
Sbjct: 128 LKELN--VAHNLIQSFKLPEYFSNLT-----------NLEH-LDLSSNKIQSIYCTDLRV 173
Query: 849 L 849
L
Sbjct: 174 L 174
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
L+VLDLS + + + L+ L +L L N + +F L+SL+ L +
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 728 G--NIPSLLGNGFVGLRILSLRSNAF-SGEIPSKLSNLSSLQVLDLAENNL 775
N P +G+ L+ L++ N S ++P SNL++L+ LDL+ N +
Sbjct: 114 SLENFP--IGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSY 675
S P L L +S + G+ + L + L+ N + L+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTG-NLPSSFQNLTSLETLDLGNNRFSG 728
++L+ + +G L L+ L++ +N + LP F NLT+LE LDL +N+
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRL 147
L+ L+++ N +PE+ +L NL++L+LS + + L LH++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 39/181 (21%)
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
K LDLS++ L + S LQ L L+ ++ ++Q+L+ L TL L N
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--- 87
Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA 788
I SL AFSG LSSLQ L E NL +G LK
Sbjct: 88 --------------IQSLALGAFSG--------LSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 789 MAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTK 848
+ + V + L ++ Y NL L H +DLS N + + T L
Sbjct: 126 LKELN--VAHNLIQSFKLPEYFSNLT-----------NLEH-LDLSSNKIQSIYCTDLRV 171
Query: 849 L 849
L
Sbjct: 172 L 172
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 25/132 (18%)
Query: 228 LDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGN------ 281
LDLS N L + L +DLS C++ + L +L L L GN
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 282 -----------------NNLSGSCSQLFRGSWKKIQILNFASNKLHG-KLPSSVANMTSL 323
NL S G K ++ LN A N + KLP +N+T+L
Sbjct: 93 LGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 324 TNFDLFDKKVEG 335
+ DL K++
Sbjct: 152 EHLDLSSNKIQS 163
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 34/201 (16%)
Query: 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723
N L VL L + LS + +L +L ++NN L +FQ TSL+ L L +
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174
Query: 724 NRFSGN----IPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSS--------------- 764
NR + IPSL + V +LS + IP + L +
Sbjct: 175 NRLTHVDLSLIPSLF-HANVSYNLLS------TLAIPIAVEELDASHNSINVVRGPVNVE 227
Query: 765 LQVLDLAENNLTGS-----IPGSVGDLKAMAHVQNIVK--YLLFGRYRGIYYEENLVINT 817
L +L L NNLT + PG V + ++ I+ ++ R +Y N ++
Sbjct: 228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287
Query: 818 KGSSKDTPRLFHFIDLSGNNL 838
+ P L +DLS N+L
Sbjct: 288 NLYGQPIPTL-KVLDLSHNHL 307
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 39/258 (15%)
Query: 228 LDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIG-FGELPNLQYLSLAGNNNLSG 286
L + N L P+ N+ L + L DL +P G F P L LS++ NNNL
Sbjct: 98 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMS-NNNLER 155
Query: 287 SCSQLFRGSWKKIQILNFASNKL-HGKL---PSSVANMTSLTNFDLFDKKVEGGIPSSIA 342
F+ + +Q L +SN+L H L PS LF V + S++A
Sbjct: 156 IEDDTFQAT-TSLQNLQLSSNRLTHVDLSLIPS------------LFHANVSYNLLSTLA 202
Query: 343 RLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPL-PSLISMRLGNNHLKGKLPEWLSQ 401
++E D S N++ +++G P+ L ++L +N+L WL
Sbjct: 203 IPIAVEELDASHNSIN-----VVRG---------PVNVELTILKLQHNNLTDT--AWLLN 246
Query: 402 LENLVELTLSYNLLQGPIPASXXXXXXXXXXXXXXXQLNGTLPETLGSLPELSVLDVSSN 461
LVE+ LSYN L+ + +L L +P L VLD+S N
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHN 305
Query: 462 SLTGI-ISEIHFSRLSKL 478
L + ++ F RL L
Sbjct: 306 HLLHVERNQPQFDRLENL 323
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 156 LFALSADSLDWLTGLVSLKHLAMNR---VDLSLVGSEWLG-ILKNLPNLTELHLSVCGLT 211
L + D+ T L +L+ L+ NR VDLSL+ S + + NL + + ++V L
Sbjct: 153 LERIEDDTFQATTSLQNLQ-LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 211
Query: 212 GSITSIT----PVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGF 267
S SI PVN+ + L L H N WL+N LV VDLS +L + F
Sbjct: 212 ASHNSINVVRGPVNV---ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 268
Query: 268 GELPNLQYLSLAGN 281
++ L+ L ++ N
Sbjct: 269 VKMQRLERLYISNN 282
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727
L+VLDLS + + + L+ L +L L N + +F L+SL+ L +
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 728 G--NIPSLLGNGFVGLRILSLRSNAF-SGEIPSKLSNLSSLQVLDLAENNL 775
N P +G+ L+ L++ N S ++P SNL++L+ LDL+ N +
Sbjct: 115 SLENFP--IGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSY 675
S P L L +S + G+ + L + L+ N + L+ L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 676 SSLSGVIPASLGQLTRLQSLHLNNNKLTG-NLPSSFQNLTSLETLDLGNNRFSG 728
++L+ + +G L L+ L++ +N + LP F NLT+LE LDL +N+
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRL 147
L+ L+++ N +PE+ +L NL++L+LS + + L LH++
Sbjct: 127 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 39/181 (21%)
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
K LDLS++ L + S LQ L L+ ++ ++Q+L+ L TL L N
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--- 88
Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA 788
I SL AFSG LSSLQ L E NL +G LK
Sbjct: 89 --------------IQSLALGAFSG--------LSSLQKLVAVETNLASLENFPIGHLKT 126
Query: 789 MAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTK 848
+ + V + L ++ Y NL L H +DLS N + + T L
Sbjct: 127 LKELN--VAHNLIQSFKLPEYFSNLT-----------NLEH-LDLSSNKIQSIYCTDLRV 172
Query: 849 L 849
L
Sbjct: 173 L 173
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 668 LKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL-DLGNNRF 726
L+VLDLS + + + L+ L +L L N + +F L+SL+ L L N
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 727 S-GNIPSLLGNGFVGLRILSLRSNAF-SGEIPSKLSNLSSLQVLDLAENNL 775
S N P +G+ L+ L++ N S ++P SNL++L+ LDL+ N +
Sbjct: 116 SLENFP--IGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 98 LEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRL 147
L+ L+++ N +PE+ +L NL++L+LS + + L LH++
Sbjct: 128 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 686 LGQLTRLQSLHLNNNKLTG-NLPSSFQNLTSLETLDLGNNRFSG 728
+G L L+ L++ +N + LP F NLT+LE LDL +N+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 39/181 (21%)
Query: 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG 728
K LDLS++ L + S LQ L L+ ++ ++Q+L+ L TL L N
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--- 89
Query: 729 NIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA 788
I SL AFSG LSSLQ L E NL +G LK
Sbjct: 90 --------------IQSLALGAFSG--------LSSLQKLVALETNLASLENFPIGHLKT 127
Query: 789 MAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTK 848
+ + V + L ++ Y NL L H +DLS N + + T L
Sbjct: 128 LKELN--VAHNLIQSFKLPEYFSNLT-----------NLEH-LDLSSNKIQSIYCTDLRV 173
Query: 849 L 849
L
Sbjct: 174 L 174
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 25/132 (18%)
Query: 228 LDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGN------ 281
LDLS N L + L +DLS C++ + L +L L L GN
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 282 -----------------NNLSGSCSQLFRGSWKKIQILNFASNKLHG-KLPSSVANMTSL 323
NL S G K ++ LN A N + KLP +N+T+L
Sbjct: 95 LGAFSGLSSLQKLVALETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 153
Query: 324 TNFDLFDKKVEG 335
+ DL K++
Sbjct: 154 EHLDLSSNKIQS 165
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 245 NISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWK------- 297
N+ L V++ +C ++P LP Q +++A N +SG + + W+
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISG---EQLKDDWQALADAPV 303
Query: 298 --KIQILNFASNKLHG-KLPSSVANMTSLTNFDLFDKKVEGGIPS 339
KIQI+ N L + +S+ L + ++EG +P+
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA 348
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%)
Query: 623 LSVSGNRLTGKIPGSIGEMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVI 682
L + N+L G ++ L + LS+N T L +L L + L +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 683 PASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSL 733
+LT+L+ L L+ N+L F LTSL+ + L N + + P +
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
Query: 589 PLPIVEIELLDLSNNHFSGPIPQN----ISGSMPNLIFLSVSGN------RLTGKIPGSI 638
P I LDLS N F + + I+G+ + LS S N K P +
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
Query: 639 G----EMQLLQVIDLSRNXXXXXXXXXXXNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS 694
E ++ DLS++ + T L+ L L+ + ++ + + LT L+
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKE 327
Query: 695 LHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSL 733
L L+ N+L F LTSL+ + L N + + P +
Sbjct: 328 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 366
>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|B Chain B, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|C Chain C, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|D Chain D, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
Length = 432
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 737 GFVGLRILSLRSNAFSGEIPSKLSNLSSLQVL--DLAENNLTGSIPGSVGDLKAMAHVQN 794
+GL ++L SG L++L SL ++ DL +N+ S+P + G +KAM
Sbjct: 114 AHLGLEPITLLQQTTSG-----LAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFG 168
Query: 795 IVKYLLFGRY 804
+ K L GR+
Sbjct: 169 LCKKLAVGRH 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,173,002
Number of Sequences: 62578
Number of extensions: 1174334
Number of successful extensions: 3306
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2267
Number of HSP's gapped (non-prelim): 565
length of query: 1009
length of database: 14,973,337
effective HSP length: 108
effective length of query: 901
effective length of database: 8,214,913
effective search space: 7401636613
effective search space used: 7401636613
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)