Query 036375
Match_columns 1009
No_of_seqs 903 out of 5477
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:04:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.7E-71 1.5E-75 700.2 49.8 583 33-938 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.4E-57 1.6E-61 571.8 41.6 515 297-935 69-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.6E-36 3.5E-41 321.8 7.7 375 501-938 79-456 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.4E-36 5.3E-41 320.5 7.7 302 406-780 81-382 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4.1E-39 8.9E-44 327.3 -12.9 475 298-911 46-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2.3E-37 5E-42 314.6 -14.3 453 243-776 64-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 7.5E-35 1.6E-39 326.2 -5.3 438 381-909 47-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.9E-34 6.3E-39 321.5 -2.6 462 299-908 47-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4E-32 8.7E-37 289.8 -4.7 277 593-916 126-409 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 6.5E-32 1.4E-36 288.2 -3.1 397 379-894 7-411 (1255)
11 KOG4237 Extracellular matrix p 99.9 3.9E-25 8.6E-30 225.8 -2.8 132 379-511 67-199 (498)
12 PLN03210 Resistant to P. syrin 99.9 4E-21 8.7E-26 244.1 28.1 308 380-749 590-903 (1153)
13 PLN03210 Resistant to P. syrin 99.9 8.2E-21 1.8E-25 241.3 26.8 339 517-909 551-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 3.8E-21 8.3E-26 225.3 17.8 242 593-916 222-463 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 4.7E-21 1E-25 224.6 17.0 267 526-898 203-469 (788)
16 KOG4237 Extracellular matrix p 99.8 6.2E-22 1.3E-26 202.6 -0.6 295 598-936 51-361 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 4.3E-19 9.4E-24 209.9 12.8 245 595-911 180-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 4.2E-19 9.1E-24 210.0 11.1 246 593-914 199-448 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2E-19 4.4E-24 199.2 0.3 276 598-909 3-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.6E-18 5.6E-23 190.3 0.6 255 622-913 2-293 (319)
21 KOG0617 Ras suppressor protein 99.7 2.5E-18 5.4E-23 156.0 -4.5 166 616-788 31-197 (264)
22 KOG0617 Ras suppressor protein 99.6 2.2E-17 4.8E-22 149.8 -3.0 162 689-896 32-194 (264)
23 PLN03150 hypothetical protein; 99.6 4.8E-15 1E-19 175.7 11.2 117 828-944 420-538 (623)
24 PLN03150 hypothetical protein; 99.4 7.1E-13 1.5E-17 157.3 12.2 101 31-155 368-476 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 3E-13 6.5E-18 145.8 -4.0 196 664-909 73-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 6.3E-13 1.4E-17 143.4 -3.1 180 593-784 75-254 (722)
27 COG4886 Leucine-rich repeat (L 99.2 4E-11 8.6E-16 136.6 8.5 123 646-774 97-220 (394)
28 COG4886 Leucine-rich repeat (L 99.2 4.4E-11 9.4E-16 136.3 7.6 148 622-776 97-245 (394)
29 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.5E-15 122.5 1.0 85 829-913 249-341 (505)
30 KOG3207 Beta-tubulin folding c 98.9 2.3E-10 5E-15 120.3 2.0 164 168-333 143-313 (505)
31 KOG1259 Nischarin, modulator o 98.9 2.9E-10 6.3E-15 113.2 1.8 84 829-915 332-416 (490)
32 KOG1259 Nischarin, modulator o 98.9 2.5E-10 5.4E-15 113.7 0.8 131 343-489 282-412 (490)
33 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.8E-14 105.5 5.4 16 688-703 62-77 (175)
34 KOG1909 Ran GTPase-activating 98.9 3.6E-10 7.9E-15 115.8 1.1 110 379-488 185-310 (382)
35 KOG1909 Ran GTPase-activating 98.9 1.1E-10 2.4E-15 119.5 -3.8 66 398-463 236-310 (382)
36 KOG0531 Protein phosphatase 1, 98.9 3.9E-10 8.4E-15 128.5 -0.4 248 617-915 71-322 (414)
37 PF14580 LRR_9: Leucine-rich r 98.8 5E-09 1.1E-13 101.4 5.9 125 662-792 15-145 (175)
38 KOG0531 Protein phosphatase 1, 98.8 6.2E-10 1.3E-14 126.8 -0.5 220 639-912 69-291 (414)
39 PF13855 LRR_8: Leucine rich r 98.8 3.2E-09 6.9E-14 84.3 2.8 60 851-910 2-61 (61)
40 PF08263 LRRNT_2: Leucine rich 98.8 7.6E-09 1.7E-13 74.8 4.1 38 34-71 2-43 (43)
41 KOG4658 Apoptotic ATPase [Sign 98.7 7.3E-09 1.6E-13 125.6 3.9 85 194-280 567-651 (889)
42 KOG2120 SCF ubiquitin ligase, 98.7 3.5E-10 7.7E-15 112.8 -7.5 198 97-348 186-390 (419)
43 PF13855 LRR_8: Leucine rich r 98.7 1.9E-08 4.1E-13 79.9 3.7 60 827-886 2-61 (61)
44 KOG4658 Apoptotic ATPase [Sign 98.6 1.1E-07 2.3E-12 115.7 9.9 274 593-881 545-826 (889)
45 KOG1859 Leucine-rich repeat pr 98.5 4.5E-09 9.8E-14 116.9 -5.6 103 829-936 190-294 (1096)
46 KOG2120 SCF ubiquitin ligase, 98.5 3.4E-09 7.3E-14 105.9 -6.2 161 193-356 205-374 (419)
47 KOG1859 Leucine-rich repeat pr 98.4 7.9E-09 1.7E-13 115.0 -6.3 180 683-912 102-293 (1096)
48 KOG4341 F-box protein containi 98.2 5.4E-08 1.2E-12 102.3 -5.4 302 97-410 139-459 (483)
49 KOG4341 F-box protein containi 98.1 1.4E-07 3.1E-12 99.2 -4.0 207 121-332 138-357 (483)
50 KOG2982 Uncharacterized conser 98.1 9.1E-07 2E-11 88.9 1.2 64 170-235 70-133 (418)
51 KOG4579 Leucine-rich repeat (L 98.0 2.5E-07 5.5E-12 82.0 -4.2 91 642-735 53-143 (177)
52 KOG4579 Leucine-rich repeat (L 98.0 9.3E-07 2E-11 78.5 -0.9 94 692-789 29-125 (177)
53 KOG2982 Uncharacterized conser 97.8 5.3E-06 1.2E-10 83.5 0.2 62 427-488 199-261 (418)
54 PRK15386 type III secretion pr 97.8 8.1E-05 1.7E-09 81.3 8.8 77 686-775 48-124 (426)
55 COG5238 RNA1 Ran GTPase-activa 97.7 4.9E-06 1.1E-10 82.6 -2.2 19 241-259 114-132 (388)
56 COG5238 RNA1 Ran GTPase-activa 97.7 4E-06 8.6E-11 83.3 -2.8 242 521-776 27-316 (388)
57 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.5E-09 70.2 6.3 112 402-536 41-152 (233)
58 PF12799 LRR_4: Leucine Rich r 97.6 3E-05 6.6E-10 56.0 1.9 35 852-887 3-37 (44)
59 PRK15386 type III secretion pr 97.6 0.00024 5.2E-09 77.6 9.0 54 617-676 51-104 (426)
60 PF13306 LRR_5: Leucine rich r 97.5 0.00019 4E-09 67.2 6.5 126 609-741 3-128 (129)
61 PF12799 LRR_4: Leucine Rich r 97.5 9.5E-05 2.1E-09 53.5 3.1 36 691-727 2-37 (44)
62 KOG3665 ZYG-1-like serine/thre 97.3 8.5E-05 1.8E-09 88.4 1.9 130 190-341 139-270 (699)
63 KOG3665 ZYG-1-like serine/thre 97.3 0.0001 2.2E-09 87.8 1.5 142 198-366 122-271 (699)
64 PF13306 LRR_5: Leucine rich r 97.2 0.00065 1.4E-08 63.5 6.1 108 635-748 5-112 (129)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00025 5.4E-09 71.3 3.1 112 94-209 41-154 (260)
66 KOG1644 U2-associated snRNP A' 97.1 0.00069 1.5E-08 65.1 4.7 109 96-208 42-150 (233)
67 KOG1947 Leucine rich repeat pr 96.6 0.0004 8.7E-09 81.7 -0.9 16 399-414 358-373 (482)
68 KOG1947 Leucine rich repeat pr 96.6 0.00035 7.7E-09 82.2 -1.4 63 246-308 242-306 (482)
69 KOG2123 Uncharacterized conser 96.3 0.00019 4.2E-09 71.9 -5.3 98 619-720 20-123 (388)
70 KOG2739 Leucine-rich acidic nu 96.2 0.0036 7.9E-08 63.1 3.3 82 642-727 43-129 (260)
71 KOG2123 Uncharacterized conser 95.5 0.00081 1.8E-08 67.6 -4.7 101 641-745 18-123 (388)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.0065 1.4E-07 36.4 0.3 12 852-863 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 95.0 0.01 2.2E-07 35.6 0.9 20 876-896 2-21 (22)
74 KOG4308 LRR-containing protein 91.7 0.0017 3.8E-08 74.0 -11.8 109 667-776 88-217 (478)
75 KOG4308 LRR-containing protein 90.7 0.0021 4.5E-08 73.4 -12.4 183 595-777 89-304 (478)
76 KOG3864 Uncharacterized conser 89.2 0.048 1E-06 53.0 -2.6 82 249-330 103-185 (221)
77 PF13504 LRR_7: Leucine rich r 86.9 0.37 7.9E-06 26.7 1.1 9 717-725 4-12 (17)
78 smart00370 LRR Leucine-rich re 86.7 0.56 1.2E-05 29.3 2.1 16 874-889 2-17 (26)
79 smart00369 LRR_TYP Leucine-ric 86.7 0.56 1.2E-05 29.3 2.1 16 874-889 2-17 (26)
80 KOG0473 Leucine-rich repeat pr 86.4 0.029 6.4E-07 55.3 -5.8 80 829-911 45-124 (326)
81 KOG0473 Leucine-rich repeat pr 85.9 0.04 8.7E-07 54.4 -5.2 79 75-156 42-122 (326)
82 smart00369 LRR_TYP Leucine-ric 85.9 0.48 1E-05 29.6 1.4 23 849-871 1-23 (26)
83 smart00370 LRR Leucine-rich re 85.9 0.48 1E-05 29.6 1.4 23 849-871 1-23 (26)
84 KOG3864 Uncharacterized conser 79.3 0.4 8.8E-06 46.8 -1.2 35 322-356 102-136 (221)
85 PF13516 LRR_6: Leucine Rich r 78.8 0.57 1.2E-05 28.6 -0.2 16 763-778 2-17 (24)
86 smart00365 LRR_SD22 Leucine-ri 69.7 3.9 8.3E-05 25.6 1.8 15 873-887 1-15 (26)
87 KOG4242 Predicted myosin-I-bin 55.3 30 0.00065 38.7 6.5 66 344-421 164-232 (553)
88 smart00368 LRR_RI Leucine rich 54.8 9.8 0.00021 24.3 1.8 14 874-887 2-15 (28)
89 KOG4242 Predicted myosin-I-bin 50.5 77 0.0017 35.7 8.7 20 523-542 164-183 (553)
90 smart00364 LRR_BAC Leucine-ric 45.4 14 0.00031 23.1 1.3 17 715-732 3-19 (26)
91 PF02950 Conotoxin: Conotoxin; 43.2 14 0.0003 30.2 1.5 10 56-65 58-67 (75)
92 KOG3763 mRNA export factor TAP 32.6 20 0.00044 40.9 1.1 32 829-860 221-254 (585)
93 PRK00523 hypothetical protein; 30.6 53 0.0011 26.4 2.7 21 979-999 15-35 (72)
94 KOG3763 mRNA export factor TAP 30.1 32 0.00069 39.4 2.0 12 716-727 272-283 (585)
95 PF01299 Lamp: Lysosome-associ 28.7 30 0.00066 37.5 1.6 29 968-996 273-301 (306)
96 PRK01844 hypothetical protein; 26.1 70 0.0015 25.7 2.7 16 983-998 18-33 (72)
97 PF01102 Glycophorin_A: Glycop 25.4 45 0.00098 30.2 1.8 12 971-982 68-79 (122)
98 TIGR00864 PCC polycystin catio 24.3 43 0.00093 46.3 2.0 32 856-887 1-32 (2740)
99 smart00367 LRR_CC Leucine-rich 22.8 56 0.0012 20.2 1.4 12 198-209 2-13 (26)
100 PF15102 TMEM154: TMEM154 prot 22.5 43 0.00094 31.1 1.1 18 978-995 70-87 (146)
101 PF07204 Orthoreo_P10: Orthore 21.3 85 0.0018 26.6 2.4 31 964-994 39-69 (98)
102 PF00558 Vpu: Vpu protein; In 21.3 1E+02 0.0022 25.6 2.9 10 995-1004 37-46 (81)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.7e-71 Score=700.22 Aligned_cols=583 Identities=37% Similarity=0.605 Sum_probs=365.9
Q ss_pred CHHHHHHHHHhhhcCCCCCCCccCCC-CCCCCCccceeecCCCCcEEEEecCCCCCCCCCCCCCCcCCEEeCCCCCCCCC
Q 036375 33 SENDLDALIDFKNGLEDPESRLASWK-GSNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDI 111 (1009)
Q Consensus 33 ~~~~~~~ll~~k~~~~~~~~~~~~W~-~~~~c~w~gv~c~~~~~~v~~l~l~~~~gi~~~l~~l~~L~~LdLs~~~~~~~ 111 (1009)
.++|++||++||+++.+|.+.+.+|+ +++||.|.||+|+. .++|+.|+|++ +.+.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~---------------------~~i~~- 83 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSG---------------------KNISG- 83 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecC---------------------CCccc-
Confidence 46899999999999988888889998 57899999999986 47888887655 44444
Q ss_pred CCCcccCCCCCCceeecccCCCCccCCCCCC-CCCCCCeeeCCCccccccCCCcccccCCCCCCeEEcCCccCCCCcchh
Q 036375 112 PIPEFLGSLENLQYLNLSEAGFTGVVPSSLG-NLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEW 190 (1009)
Q Consensus 112 ~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~-~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 190 (1009)
.+|..+..+++|++|+|++|.+.+.+|..+. ++++|++|++++|
T Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n----------------------------------- 128 (968)
T PLN00113 84 KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN----------------------------------- 128 (968)
T ss_pred cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-----------------------------------
Confidence 3455566666666666666666655554433 4444444444444
Q ss_pred hhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCC
Q 036375 191 LGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGEL 270 (1009)
Q Consensus 191 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 270 (1009)
.+++.+|. ..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++
T Consensus 129 ------------------~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 129 ------------------NFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred ------------------ccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence 22222221 234455555555555555556666666666666666666666666666666
Q ss_pred CCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEE
Q 036375 271 PNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEF 350 (1009)
Q Consensus 271 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 350 (1009)
++|++|++++|. +.+.+|..++++++|++|++++|.+.+.+|..++++++|++|
T Consensus 188 ~~L~~L~L~~n~--------------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 188 TSLEFLTLASNQ--------------------------LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred cCCCeeeccCCC--------------------------CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 666666555552 234445555555555555555555555555555544444444
Q ss_pred EcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCc
Q 036375 351 DLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLT 430 (1009)
Q Consensus 351 ~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 430 (1009)
++++|.+++ .+|..+.++++|++|++++|.+.+.+|..+.++++|+
T Consensus 242 ~L~~n~l~~----------------------------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 242 DLVYNNLTG----------------------------------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred ECcCceecc----------------------------------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence 444444433 3344444444455555555554444454555555555
Q ss_pred EEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccC
Q 036375 431 KLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSC 510 (1009)
Q Consensus 431 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~ 510 (1009)
+|++++|.+.+.+|..+.++++|+.|++++|.+++..+.. +..+++|++|++++
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~------------------------- 341 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWS------------------------- 341 (968)
T ss_pred EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcC-------------------------
Confidence 5555555555555555555555555555555544332221 11122211111111
Q ss_pred cCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCC
Q 036375 511 QLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPL 590 (1009)
Q Consensus 511 ~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~ 590 (1009)
T Consensus 342 -------------------------------------------------------------------------------- 341 (968)
T PLN00113 342 -------------------------------------------------------------------------------- 341 (968)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCE
Q 036375 591 PIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKV 670 (1009)
Q Consensus 591 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 670 (1009)
|.+.+.+|.. +..+++|+.|++++|++++.+|..++.+++|+.|++++|++.+.+|..+..+++
T Consensus 342 ------------n~l~~~~p~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~--- 405 (968)
T PLN00113 342 ------------NKFSGEIPKN-LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS--- 405 (968)
T ss_pred ------------CCCcCcCChH-HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC---
Confidence 1111111111 112233333444444333333444444444555555555555444444444444
Q ss_pred EECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCc
Q 036375 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA 750 (1009)
Q Consensus 671 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~ 750 (1009)
|+.|++++|++++.+|..|..+++|+.|++++|.+++.+|..+. .+++|+.|++++|+
T Consensus 406 ---------------------L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~ 463 (968)
T PLN00113 406 ---------------------LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNK 463 (968)
T ss_pred ---------------------CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCce
Confidence 44555555554444444455555555555555555554544443 25555555555555
Q ss_pred ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375 751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF 830 (1009)
Q Consensus 751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 830 (1009)
+.+.+|..+ ..++|+.||+++|++++.+|..+.+++.| +.
T Consensus 464 ~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L---------------------------------------~~ 503 (968)
T PLN00113 464 FFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL---------------------------------------MQ 503 (968)
T ss_pred eeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc---------------------------------------CE
Confidence 555555443 34678888888888888888888887776 78
Q ss_pred EEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcc
Q 036375 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL 910 (1009)
Q Consensus 831 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 910 (1009)
|+|++|++++.+|..++++++|++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|++|++++|++
T Consensus 504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCcccCCcCCCCCCCCCCC
Q 036375 911 SGKIPFEGHMTTFDASSFAGNPGLCGDP 938 (1009)
Q Consensus 911 ~g~ip~~~~~~~~~~~~~~~n~~lc~~~ 938 (1009)
+|.+|..+++.++...++.||+.+||.+
T Consensus 584 ~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 584 HGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred eeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.4e-57 Score=571.77 Aligned_cols=515 Identities=35% Similarity=0.555 Sum_probs=448.2
Q ss_pred CCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhh-cccCCCEEEcCCCcCCCCCCccccccccccCCC
Q 036375 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIA-RLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSN 375 (1009)
Q Consensus 297 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 375 (1009)
.+++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+++.+|..
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~----------- 137 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG----------- 137 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc-----------
Confidence 4677777777788888888888899999999999988888887765 8889999999999888877753
Q ss_pred CCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCE
Q 036375 376 SPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSV 455 (1009)
Q Consensus 376 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 455 (1009)
.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++
T Consensus 138 -~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 138 -SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred -ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 5788999999999998888888999999999999999988888888999999999999999998888888899999999
Q ss_pred EEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCc
Q 036375 456 LDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNAS 535 (1009)
Q Consensus 456 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~ 535 (1009)
|++++|.+++.++. .+.++++|++|++++|.+ .+.+|..+..+++|+.|++++|.
T Consensus 217 L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l------------------------~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 217 IYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNL------------------------TGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred EECcCCccCCcCCh-hHhcCCCCCEEECcCcee------------------------ccccChhHhCCCCCCEEECcCCe
Confidence 99999998877776 377888888887777754 34567778888889999999888
Q ss_pred ccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhc
Q 036375 536 ISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISG 615 (1009)
Q Consensus 536 i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~ 615 (1009)
+++.+|..+.. + .+|+.|++++|.+.+.+|. .+.
T Consensus 272 l~~~~p~~l~~-l--------------------------------------------~~L~~L~Ls~n~l~~~~p~-~~~ 305 (968)
T PLN00113 272 LSGPIPPSIFS-L--------------------------------------------QKLISLDLSDNSLSGEIPE-LVI 305 (968)
T ss_pred eeccCchhHhh-c--------------------------------------------cCcCEEECcCCeeccCCCh-hHc
Confidence 88877776642 2 3455556666666656654 335
Q ss_pred CCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 036375 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL 695 (1009)
Q Consensus 616 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 695 (1009)
.+++|++|++++|.+++..|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+..+++|+.|
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 68889999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 036375 696 HLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775 (1009)
Q Consensus 696 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 775 (1009)
++++|++.+.+|..+..+++|+.|++++|++++.+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|++
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 9999999999999999999999999999999999999877 499999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeE
Q 036375 776 TGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL 855 (1009)
Q Consensus 776 ~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L 855 (1009)
.+.+|..++ .+. ++.|||++|++++.+|..+.++++|+.|
T Consensus 465 ~~~~p~~~~-~~~---------------------------------------L~~L~ls~n~l~~~~~~~~~~l~~L~~L 504 (968)
T PLN00113 465 FGGLPDSFG-SKR---------------------------------------LENLDLSRNQFSGAVPRKLGSLSELMQL 504 (968)
T ss_pred eeecCcccc-ccc---------------------------------------ceEEECcCCccCCccChhhhhhhccCEE
Confidence 998887543 222 3899999999999999999999999999
Q ss_pred EccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC-CCCCcccCCcCCCCCCC
Q 036375 856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE-GHMTTFDASSFAGNPGL 934 (1009)
Q Consensus 856 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~l 934 (1009)
+|++|++++.+|+.+.++++|++|+|++|.++|.+|..++.+++|++||+++|+++|.+|.. ..+..+....+.+|+..
T Consensus 505 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999975 33445556667788755
Q ss_pred C
Q 036375 935 C 935 (1009)
Q Consensus 935 c 935 (1009)
+
T Consensus 585 ~ 585 (968)
T PLN00113 585 G 585 (968)
T ss_pred e
Confidence 4
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-36 Score=321.79 Aligned_cols=375 Identities=24% Similarity=0.276 Sum_probs=301.0
Q ss_pred cccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEecc
Q 036375 501 QVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFR 580 (1009)
Q Consensus 501 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~ 580 (1009)
..+.|++++|.+....+..|.++++|+++++.+|.++ .||... .....++.|+|.+|.++..-.+.+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L----------- 145 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEEL----------- 145 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHH-----------
Confidence 4555666666667777777777777777777777776 444432 233457777777776654322222
Q ss_pred CCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcC
Q 036375 581 SNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISS 660 (1009)
Q Consensus 581 ~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 660 (1009)
..++.|+.||||.|.++ .+|...|..-.++++|+|++|+|+....+.|.++.+|..|.|++|+++...+.
T Consensus 146 ---------~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r 215 (873)
T KOG4194|consen 146 ---------SALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR 215 (873)
T ss_pred ---------HhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHH
Confidence 12467888999999988 77777777778899999999999999999999999999999999999988888
Q ss_pred cccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcC
Q 036375 661 SIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVG 740 (1009)
Q Consensus 661 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~ 740 (1009)
.|.+++.|+.|+|..|+|.-.---.|.++++|+.|.|..|.+...--..|..|.++++|+|+.|+++..-..|++ ++++
T Consensus 216 ~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~ 294 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTS 294 (873)
T ss_pred HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccch
Confidence 899999999999999999855456789999999999999999977778899999999999999999866667777 5999
Q ss_pred CcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCC
Q 036375 741 LRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGS 820 (1009)
Q Consensus 741 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1009)
|+.|++++|.+...-++....+++|++|||++|+++..-++.|..|..|
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L------------------------------- 343 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL------------------------------- 343 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh-------------------------------
Confidence 9999999999998888888899999999999999998888888888887
Q ss_pred CCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCC---CccCCCCCCEEeCCCCcCCCCCcccccCC
Q 036375 821 SKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPE---NISGLHQLASLDLSSNNLSGGIPSSLSSL 897 (1009)
Q Consensus 821 ~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 897 (1009)
+.|+|++|.++..-...|..+++|+.|||++|.+++.|-+ .|.+|++|+.|+|-+|+|..+...+|.++
T Consensus 344 --------e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl 415 (873)
T KOG4194|consen 344 --------EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL 415 (873)
T ss_pred --------hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccC
Confidence 7788999999888888889999999999999999887654 57789999999999999998777889999
Q ss_pred CCCCeEeCCCCcceecCCCCCCCCcccCCcCCCCCCCCCCC
Q 036375 898 SFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDP 938 (1009)
Q Consensus 898 ~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~~ 938 (1009)
..|+.|||.+|.+-..-|..-....++..-+..-..+|.+.
T Consensus 416 ~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 416 EALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQ 456 (873)
T ss_pred cccceecCCCCcceeecccccccchhhhhhhcccceEEecc
Confidence 99999999999887655543111133333333344677653
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-36 Score=320.47 Aligned_cols=302 Identities=26% Similarity=0.257 Sum_probs=182.7
Q ss_pred CEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCC
Q 036375 406 VELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSS 485 (1009)
Q Consensus 406 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 485 (1009)
+.|++++|++....+..|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.++.. ....++.++.|++|||+.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv-~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSV-TSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccc-cHHHHHhHhhhhhhhhhh
Confidence 44666666666655556666666666666666665 4555444444566666666666543 333466666677777776
Q ss_pred CcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccC
Q 036375 486 NSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQL 565 (1009)
Q Consensus 486 n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~ 565 (1009)
|.+..+....|....++++|++++|.++..-...|..+
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l------------------------------------------ 196 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL------------------------------------------ 196 (873)
T ss_pred chhhcccCCCCCCCCCceEEeecccccccccccccccc------------------------------------------
Confidence 66655444444333333333333333332222222222
Q ss_pred CCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCC
Q 036375 566 PNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQ 645 (1009)
Q Consensus 566 ~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 645 (1009)
.+|..|.|++|.++ .+|...|..+++|+.|+|..|+|.-.---.|.++++|+
T Consensus 197 ---------------------------nsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 197 ---------------------------NSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ 248 (873)
T ss_pred ---------------------------chheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence 23444444444544 56666666666666777766666644345666777777
Q ss_pred eEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCc
Q 036375 646 VIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725 (1009)
Q Consensus 646 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 725 (1009)
.|.|..|.+.....+.|-.|.++++|+|+.|+++..-..++.++++|+.|++++|.|...-++++.-+++|++|+|+.|+
T Consensus 249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc
Confidence 77777777776666667777777777777777776666677777777777777777776666777777777777777777
Q ss_pred ccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCC
Q 036375 726 FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP 780 (1009)
Q Consensus 726 l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 780 (1009)
++ .+++.-+..+..|+.|.|++|.++..-...|..+++|+.|||++|.+++.|-
T Consensus 329 i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 329 IT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred cc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 76 4444433346666666677666664444556666666666666666665443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.1e-39 Score=327.30 Aligned_cols=475 Identities=28% Similarity=0.423 Sum_probs=301.2
Q ss_pred CccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCC
Q 036375 298 KIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSP 377 (1009)
Q Consensus 298 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 377 (1009)
.++.+.+++|.+. .+.+.+.++..|.++++++|++. ..|++++.+.+++.++.++|++.. +|+.+. .
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~----------s 112 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIG----------S 112 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHh----------h
Confidence 4555555555555 33345677777888888888777 567777877777788887777763 343333 4
Q ss_pred CCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEE
Q 036375 378 LPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLD 457 (1009)
Q Consensus 378 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 457 (1009)
+.+++.+++++|.+. .+|+.++.+..|+.++..+|+++ ..|+.+.++.+|..+++.+|+++...|..+ +++.|++||
T Consensus 113 ~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld 189 (565)
T KOG0472|consen 113 LISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLD 189 (565)
T ss_pred hhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcc
Confidence 667777777777776 55666777777777777777776 456667777777777777777774433333 377777777
Q ss_pred ccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCccc
Q 036375 458 VSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASIS 537 (1009)
Q Consensus 458 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~ 537 (1009)
...|.++. +|+ .++.+.+|+.|++..|++.. .| .|..+..|+++.++.|+|.
T Consensus 190 ~~~N~L~t-lP~-~lg~l~~L~~LyL~~Nki~~-------------------------lP-ef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 190 CNSNLLET-LPP-ELGGLESLELLYLRRNKIRF-------------------------LP-EFPGCSLLKELHVGENQIE 241 (565)
T ss_pred cchhhhhc-CCh-hhcchhhhHHHHhhhccccc-------------------------CC-CCCccHHHHHHHhcccHHH
Confidence 77777653 333 26666666666666665521 12 2333334444444444333
Q ss_pred CCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCC
Q 036375 538 GPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSM 617 (1009)
Q Consensus 538 ~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l 617 (1009)
.+|......+ .++.+||+..|+++ +.|++++ .+
T Consensus 242 -~lpae~~~~L--------------------------------------------~~l~vLDLRdNklk-e~Pde~c-lL 274 (565)
T KOG0472|consen 242 -MLPAEHLKHL--------------------------------------------NSLLVLDLRDNKLK-EVPDEIC-LL 274 (565)
T ss_pred -hhHHHHhccc--------------------------------------------ccceeeeccccccc-cCchHHH-Hh
Confidence 2222222222 22333333333333 4454443 24
Q ss_pred CCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCC--CCCCEEE-------CCCCcC----ccc-CC
Q 036375 618 PNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNC--TFLKVLD-------LSYSSL----SGV-IP 683 (1009)
Q Consensus 618 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~-------Ls~N~l----~~~-~p 683 (1009)
.+|++||+|+|.+++ .|..++++ .|+.|.+.+|.+..+-.+.+..- .-|++|. ++.-+= ... .+
T Consensus 275 rsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 275 RSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred hhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence 555555555555553 33445555 55555555555432111100000 0011110 000000 000 11
Q ss_pred cc---ccCCCCCCEEEccCccccCCCchhhcCCCC---CCEEECcCCcccccCchhhhhcCcCCc-EEEccCCcccccCC
Q 036375 684 AS---LGQLTRLQSLHLNNNKLTGNLPSSFQNLTS---LETLDLGNNRFSGNIPSLLGNGFVGLR-ILSLRSNAFSGEIP 756 (1009)
Q Consensus 684 ~~---~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~ip~~l~~~l~~L~-~L~L~~N~l~~~~p 756 (1009)
.. .....+.+.|+++.-+++ .+|.....-.. .+..+++.|++. ++|..+.. +..+. .+.+++|.++ .+|
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~l~lsnn~is-fv~ 428 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE-LKELVTDLVLSNNKIS-FVP 428 (565)
T ss_pred Ccccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH-HHHHHHHHHhhcCccc-cch
Confidence 11 123456788888888888 45655433333 778899999987 88887654 44443 4455556554 788
Q ss_pred cccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCC
Q 036375 757 SKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGN 836 (1009)
Q Consensus 757 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N 836 (1009)
..++.+++|..|+|++|.+. .+|..++.+..| +.||+|.|
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L---------------------------------------q~LnlS~N 468 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL---------------------------------------QTLNLSFN 468 (565)
T ss_pred HHHHhhhcceeeecccchhh-hcchhhhhhhhh---------------------------------------heeccccc
Confidence 88899999999999988887 678888887776 88999999
Q ss_pred ccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcce
Q 036375 837 NLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911 (1009)
Q Consensus 837 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 911 (1009)
+|. .+|..+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..+++|++|++|++++|++.
T Consensus 469 rFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 469 RFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 887 78988888888888888889999888888999999999999999998 68999999999999999999997
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-37 Score=314.59 Aligned_cols=453 Identities=27% Similarity=0.432 Sum_probs=266.9
Q ss_pred hhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCC
Q 036375 243 LVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTS 322 (1009)
Q Consensus 243 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~ 322 (1009)
+.++..|.+|++++|++. ..|++++++..++.++.+.|+. ..+|..++...+++.+++++|.+. .+|++++.+..
T Consensus 64 l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l---s~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~ 138 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL---SELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLD 138 (565)
T ss_pred hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH---hhccHHHhhhhhhhhhhcccccee-ecCchHHHHhh
Confidence 444555555555555553 3344555555555555555421 122222222223333333333333 44555555556
Q ss_pred CCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCC
Q 036375 323 LTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQL 402 (1009)
Q Consensus 323 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 402 (1009)
|+.++..+|++. ..|+++..+.+|..+++.+|++....|..+ ++
T Consensus 139 l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-----------------------------------~m 182 (565)
T KOG0472|consen 139 LEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-----------------------------------AM 182 (565)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-----------------------------------HH
Confidence 666666655555 355555555555555555555543333322 25
Q ss_pred CCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEe
Q 036375 403 ENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLG 482 (1009)
Q Consensus 403 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 482 (1009)
+.|++||...|-+. .+|..++.+.+|+.|++..|++. ..| .|..|..|++++++.|.+. .++.....+++++.+||
T Consensus 183 ~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeee
Confidence 55555555555444 44445555555555555555554 333 4555555555555555554 33444445555555555
Q ss_pred CCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEecccccc
Q 036375 483 LSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ 562 (1009)
Q Consensus 483 L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~ 562 (1009)
+.+|++. ..|..+..+.+|.+||+|+|.|++ .|..++.. .|+.|.+.+|.+.
T Consensus 259 LRdNklk-------------------------e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl--hL~~L~leGNPlr 310 (565)
T KOG0472|consen 259 LRDNKLK-------------------------EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL--HLKFLALEGNPLR 310 (565)
T ss_pred ccccccc-------------------------cCchHHHHhhhhhhhcccCCcccc-CCcccccc--eeeehhhcCCchH
Confidence 5555542 223333333334444444444432 22222211 3444444444332
Q ss_pred ccCCCCCCCCC---cCeE-------eccCC---------CCCCCCCC--CCCCccEEEccCCcCCCcCCchhhcCCC--C
Q 036375 563 GQLPNPLNIAP---FADV-------DFRSN---------LLEGPIPL--PIVEIELLDLSNNHFSGPIPQNISGSMP--N 619 (1009)
Q Consensus 563 ~~~~~~~~~~~---l~~l-------~l~~n---------~l~~~~~~--~~~~L~~L~Ls~n~l~~~ip~~~~~~l~--~ 619 (1009)
..-.+.+.... ++++ .++.. ...+..|. ...+.+.|+++.-+++ .+|+++|..-. -
T Consensus 311 TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~ 389 (565)
T KOG0472|consen 311 TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEI 389 (565)
T ss_pred HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcc
Confidence 11000000000 0000 00000 00111111 2256788999999998 89998886543 3
Q ss_pred ccEEEccCCcccccCCcccccCCCCCe-EEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 036375 620 LIFLSVSGNRLTGKIPGSIGEMQLLQV-IDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698 (1009)
Q Consensus 620 L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 698 (1009)
.+..+++.|++. .+|..+..++.+++ +.+++|.+ +.+|..++.+++|..|+|++|-+. .+|..++.+..|+.|+++
T Consensus 390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLS 466 (565)
T ss_pred eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccc
Confidence 778999999998 56777766666655 45555555 488889999999999999999888 688889999999999999
Q ss_pred CccccCCCchhhcCCCCCCEEECcCCcccccCchh-hhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSL-LGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 699 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 776 (1009)
.|+|. .+|.....+..++++-.++|++. .++.. +. ++.+|..||+.+|.+. .+|..++++++|++|++++|+|.
T Consensus 467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l~-nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 467 FNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGLK-NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHhh-hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99998 78999888888998888889997 56555 65 5999999999999998 88999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=7.5e-35 Score=326.22 Aligned_cols=438 Identities=30% Similarity=0.399 Sum_probs=239.5
Q ss_pred CcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccC
Q 036375 381 LISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSS 460 (1009)
Q Consensus 381 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 460 (1009)
|+.|++++|++. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|+.|+++.
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence 555555555555 45555566666666666666655 44555666666666666666655 5566666666666666666
Q ss_pred cccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCC
Q 036375 461 NSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPI 540 (1009)
Q Consensus 461 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~ 540 (1009)
|.+.. +|. .+..+..++.+..++|..... .+-..++.+++..+.+.+.++.....++. .+|+.+|.+. ..
T Consensus 124 N~f~~-~Pl-~i~~lt~~~~~~~s~N~~~~~-----lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~ 193 (1081)
T KOG0618|consen 124 NHFGP-IPL-VIEVLTAEEELAASNNEKIQR-----LGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL 193 (1081)
T ss_pred hccCC-Cch-hHHhhhHHHHHhhhcchhhhh-----hccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh
Confidence 66652 333 255556666666666611111 11112666777777777777766666665 6888888776 21
Q ss_pred CchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCc
Q 036375 541 PNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNL 620 (1009)
Q Consensus 541 p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L 620 (1009)
-...+.+++.+....|++.... ... ++++.|+.++|.++...+ .....+|
T Consensus 194 ---dls~~~~l~~l~c~rn~ls~l~---~~g---------------------~~l~~L~a~~n~l~~~~~---~p~p~nl 243 (1081)
T KOG0618|consen 194 ---DLSNLANLEVLHCERNQLSELE---ISG---------------------PSLTALYADHNPLTTLDV---HPVPLNL 243 (1081)
T ss_pred ---hhhhccchhhhhhhhcccceEE---ecC---------------------cchheeeeccCcceeecc---ccccccc
Confidence 1123466777777777665211 111 344555555555541111 1123455
Q ss_pred cEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCc
Q 036375 621 IFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNN 700 (1009)
Q Consensus 621 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 700 (1009)
++++++.|++++.. .+++.+.+|+.++..+|+++ .+|..+...++|+.|...+|.+. -+|....+++.|++|+|..|
T Consensus 244 ~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 244 QYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred eeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhc
Confidence 55555555555333 55555556666666665553 44555555555666666666555 33444455556666666666
Q ss_pred cccCCCchh-hcCCCC-CCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCC
Q 036375 701 KLTGNLPSS-FQNLTS-LETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS 778 (1009)
Q Consensus 701 ~l~~~~p~~-~~~l~~-L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 778 (1009)
++.. .|.. +.-... |+.|+.+.|++. ..|..-....+.|+.|++.+|.++......+.+..+|++|+|++|++...
T Consensus 321 ~L~~-lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 321 NLPS-LPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred cccc-cchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 6552 3322 222222 455555555554 44433333345566666666666655555556666666666666666533
Q ss_pred CChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEcc
Q 036375 779 IPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLS 858 (1009)
Q Consensus 779 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 858 (1009)
....+.++..| +.|+||+|.++ .+|.++.++..|++|...
T Consensus 399 pas~~~kle~L---------------------------------------eeL~LSGNkL~-~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 399 PASKLRKLEEL---------------------------------------EELNLSGNKLT-TLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred CHHHHhchHHh---------------------------------------HHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence 33344444444 55566666666 455666666666666666
Q ss_pred CCcccccCCCCccCCCCCCEEeCCCCcCCCC-CcccccCCCCCCeEeCCCCc
Q 036375 859 RNHIGGQIPENISGLHQLASLDLSSNNLSGG-IPSSLSSLSFLGYINLSRNQ 909 (1009)
Q Consensus 859 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~ls~N~ 909 (1009)
+|++. ..| .+.++++|+.+|+|.|+|+.. +|..... +.|++||+++|.
T Consensus 439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred CCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 66665 333 556666666666666666532 3333222 556666666664
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.9e-34 Score=321.52 Aligned_cols=462 Identities=28% Similarity=0.399 Sum_probs=310.8
Q ss_pred ccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCC
Q 036375 299 IQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPL 378 (1009)
Q Consensus 299 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l 378 (1009)
|+.|++++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.+|.+. ..|..+. .+
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~----------~l 113 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS----------EL 113 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHH----------hh
Confidence 444444444433 34444555555555555555544 34445555555555555555443 2222222 34
Q ss_pred CCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEc
Q 036375 379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDV 458 (1009)
Q Consensus 379 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 458 (1009)
.+|+.|+++.|.+. .+|..+..++.+++++.++|..... ++... ++.+++..|.+.+.++..+..+.. .|+|
T Consensus 114 knl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldL 185 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDL 185 (1081)
T ss_pred hcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeec
Confidence 45555555555554 5555666666666667766622212 22222 666677777766666666655555 5777
Q ss_pred cCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccC
Q 036375 459 SSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG 538 (1009)
Q Consensus 459 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~ 538 (1009)
++|.+. . ..+..+.+|+.+....|++.. ++++
T Consensus 186 r~N~~~-~---~dls~~~~l~~l~c~rn~ls~--------------------------------------l~~~------ 217 (1081)
T KOG0618|consen 186 RYNEME-V---LDLSNLANLEVLHCERNQLSE--------------------------------------LEIS------ 217 (1081)
T ss_pred ccchhh-h---hhhhhccchhhhhhhhcccce--------------------------------------EEec------
Confidence 777665 1 135566666666666664421 1110
Q ss_pred CCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCC
Q 036375 539 PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMP 618 (1009)
Q Consensus 539 ~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~ 618 (1009)
.++++.|+.+.|.++...+.. ...+++++++++|+++ .+| ++...+.
T Consensus 218 ---------g~~l~~L~a~~n~l~~~~~~p----------------------~p~nl~~~dis~n~l~-~lp-~wi~~~~ 264 (1081)
T KOG0618|consen 218 ---------GPSLTALYADHNPLTTLDVHP----------------------VPLNLQYLDISHNNLS-NLP-EWIGACA 264 (1081)
T ss_pred ---------CcchheeeeccCcceeecccc----------------------ccccceeeecchhhhh-cch-HHHHhcc
Confidence 134444444444443111111 1257888888888888 677 7788899
Q ss_pred CccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCC-CCEEEc
Q 036375 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTR-LQSLHL 697 (1009)
Q Consensus 619 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L 697 (1009)
+|+.++..+|+++ .+|..+...++|+.|++.+|.+. -+|......+.|+.|+|..|++....+..+..... |..|+.
T Consensus 265 nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 265 NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhh
Confidence 9999999999995 67777778899999999999998 56777888999999999999998544444444443 788888
Q ss_pred cCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCC
Q 036375 698 NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG 777 (1009)
Q Consensus 698 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 777 (1009)
+.|++.......=...+.|+.|.+.+|.++...-..+. +...|++|+|++|++.......+.++..|++|+||+|+++
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT- 420 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence 88888743322223456799999999999977666655 5899999999999998444456889999999999999998
Q ss_pred CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEc
Q 036375 778 SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNL 857 (1009)
Q Consensus 778 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 857 (1009)
.+|.++.++..| +.|..-+|++. ..| ++..+++|+.+|+
T Consensus 421 ~Lp~tva~~~~L---------------------------------------~tL~ahsN~l~-~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 421 TLPDTVANLGRL---------------------------------------HTLRAHSNQLL-SFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred hhhHHHHhhhhh---------------------------------------HHHhhcCCcee-ech-hhhhcCcceEEec
Confidence 778999888888 55667778776 566 8999999999999
Q ss_pred cCCccccc-CCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375 858 SRNHIGGQ-IPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908 (1009)
Q Consensus 858 s~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 908 (1009)
|.|+++.. +|..... ++|++|||++|.=.-..-..|..++++..+++.-|
T Consensus 460 S~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 460 SCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99999865 4444333 89999999999854455677888888888888877
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4e-32 Score=289.78 Aligned_cols=277 Identities=29% Similarity=0.441 Sum_probs=208.0
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
.++-.|+||+|++. .||..+|.+++.|-+||||+|++. ..|..+..+..|++|+|++|.+....-..+..+++|+.|.
T Consensus 126 Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence 45667788888886 899999999999999999999988 4566788888999999999987654444566677888888
Q ss_pred CCCCcCc-ccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcc
Q 036375 673 LSYSSLS-GVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAF 751 (1009)
Q Consensus 673 Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l 751 (1009)
+++.+-+ .-+|.++..+.+|..+|++.|.+. ..|+.+..+++|+.|+|++|+++ .+...... ..+|+.|+++.|++
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~-W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGE-WENLETLNLSRNQL 280 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHH-Hhhhhhhccccchh
Confidence 8876543 347888888888888899888888 78888888888888888888887 55554443 56788888888888
Q ss_pred cccCCcccCCCCCCCEEEccCCcCCC-CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375 752 SGEIPSKLSNLSSLQVLDLAENNLTG-SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF 830 (1009)
Q Consensus 752 ~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 830 (1009)
+ .+|..++.++.|+.|.+.+|+++- -||..++++..| +.
T Consensus 281 t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L---------------------------------------ev 320 (1255)
T KOG0444|consen 281 T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL---------------------------------------EV 320 (1255)
T ss_pred c-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh---------------------------------------HH
Confidence 7 788888888888888888888763 367788888777 44
Q ss_pred EEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCC---
Q 036375 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSR--- 907 (1009)
Q Consensus 831 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~--- 907 (1009)
+..++|.+. ..|+.+..+..|+.|.|++|++. ..|+++.-|+.|+.||+..|.---..|.-=..-++|+.-++..
T Consensus 321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq 398 (1255)
T KOG0444|consen 321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQ 398 (1255)
T ss_pred HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehh
Confidence 556667665 67888888888888888888887 6678888888888888888854433333222224555544442
Q ss_pred C--cceecCCC
Q 036375 908 N--QLSGKIPF 916 (1009)
Q Consensus 908 N--~l~g~ip~ 916 (1009)
+ +|.|..|.
T Consensus 399 ~QlrlAG~~pa 409 (1255)
T KOG0444|consen 399 HQLRLAGQMPA 409 (1255)
T ss_pred hHHhhccCCcc
Confidence 2 34565553
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=6.5e-32 Score=288.16 Aligned_cols=397 Identities=27% Similarity=0.394 Sum_probs=262.3
Q ss_pred CCCcEEECcCCcCc-ccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEE
Q 036375 379 PSLISMRLGNNHLK-GKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLD 457 (1009)
Q Consensus 379 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 457 (1009)
|-.+-.++++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+..++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 33444455555554 234555555555555555555444 34555555555555555555554 2223344455555555
Q ss_pred ccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCccc
Q 036375 458 VSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASIS 537 (1009)
Q Consensus 458 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~ 537 (1009)
+..|++.....+..+-.+..|..||+++|++. ..|..+...+++-.|++|+|+|.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------------------------EvP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------------------------EVPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-------------------------hcchhhhhhcCcEEEEcccCccc
Confidence 55554432211112334444444444444432 23444444455555666666654
Q ss_pred CCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCC
Q 036375 538 GPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSM 617 (1009)
Q Consensus 538 ~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l 617 (1009)
.||..++-.++.|-+ ||||+|++. .+|+.+ ..+
T Consensus 140 -tIPn~lfinLtDLLf--------------------------------------------LDLS~NrLe-~LPPQ~-RRL 172 (1255)
T KOG0444|consen 140 -TIPNSLFINLTDLLF--------------------------------------------LDLSNNRLE-MLPPQI-RRL 172 (1255)
T ss_pred -cCCchHHHhhHhHhh--------------------------------------------hccccchhh-hcCHHH-HHH
Confidence 455555444444444 444444443 555544 457
Q ss_pred CCccEEEccCCcccccCCcccccCCCCCeEEccCCcCC-ccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 036375 618 PNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS-GSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH 696 (1009)
Q Consensus 618 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 696 (1009)
..|++|+|++|.+....-..+..+++|++|.+++.+-+ .-+|.++..+.+|..+|+|.|.+. ..|+++..+++|+.|+
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheec
Confidence 88999999999887554445556788889999886644 457888999999999999999998 7899999999999999
Q ss_pred ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc-ccCCcccCCCCCCCEEEccCCcC
Q 036375 697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS-GEIPSKLSNLSSLQVLDLAENNL 775 (1009)
Q Consensus 697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l 775 (1009)
|++|+++ .+........+|++|+++.|+++ .+|+.+.+ ++.|+.|.+.+|+++ .-+|+.++.+.+|+++..++|.+
T Consensus 252 LS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 252 LSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred cCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 9999998 45556677788999999999998 89998886 999999999999876 34788999999999999999988
Q ss_pred CCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeE
Q 036375 776 TGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL 855 (1009)
Q Consensus 776 ~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L 855 (1009)
. .+|+.++.+..| +.|.|++|++- ..|+.+.-++.|+.|
T Consensus 329 E-lVPEglcRC~kL---------------------------------------~kL~L~~NrLi-TLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 329 E-LVPEGLCRCVKL---------------------------------------QKLKLDHNRLI-TLPEAIHLLPDLKVL 367 (1255)
T ss_pred c-cCchhhhhhHHH---------------------------------------HHhccccccee-echhhhhhcCCccee
Confidence 7 789999988888 66788888887 688999999999999
Q ss_pred EccCCcccccCCCCccCCCCCCEEeCCCC-----cCCCCCcccc
Q 036375 856 NLSRNHIGGQIPENISGLHQLASLDLSSN-----NLSGGIPSSL 894 (1009)
Q Consensus 856 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-----~l~~~ip~~l 894 (1009)
|+..|.=--.+|.--..-++|+.-++... ++.|..|++.
T Consensus 368 DlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pasv 411 (1255)
T KOG0444|consen 368 DLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPASV 411 (1255)
T ss_pred eccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcccc
Confidence 99998655455443222356665444332 4556666543
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=3.9e-25 Score=225.80 Aligned_cols=132 Identities=23% Similarity=0.314 Sum_probs=104.3
Q ss_pred CCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCC-CcCCCCCCcccCCCCCCCEEE
Q 036375 379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPG-NQLNGTLPETLGSLPELSVLD 457 (1009)
Q Consensus 379 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 457 (1009)
+.-++++|..|+|+...+.+|+.+++|+.|||++|.|+.+.|.+|.++++|.+|.+.+ |+|+......|+++.+|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4677888888888877778888888888888888888888888888888888777766 888866566788888888888
Q ss_pred ccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCc
Q 036375 458 VSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQ 511 (1009)
Q Consensus 458 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 511 (1009)
+.-|++.- +....|..+++|..|.+.+|.+..+....+.+...++.+.+..+.
T Consensus 147 lNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 147 LNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cChhhhcc-hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 88888774 444568888888888888888887777777777777777666554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=4e-21 Score=244.10 Aligned_cols=308 Identities=20% Similarity=0.279 Sum_probs=150.9
Q ss_pred CCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEcc
Q 036375 380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVS 459 (1009)
Q Consensus 380 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 459 (1009)
+|+.|.+.++.+. .+|..+ ...+|++|++.+|.+. .++..+..+++|+.|+|++|.....+|. +..+++|+.|+++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 4566666655554 444444 3456666666666555 3445555666666666665544444443 5556666666666
Q ss_pred CcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCC
Q 036375 460 SNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGP 539 (1009)
Q Consensus 460 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~ 539 (1009)
+|.....+|. .+..+++|+.|++++|..... +|..+ ++++|+.|++++|...+.
T Consensus 666 ~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~------------------------Lp~~i-~l~sL~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 666 DCSSLVELPS-SIQYLNKLEDLDMSRCENLEI------------------------LPTGI-NLKSLYRLNLSGCSRLKS 719 (1153)
T ss_pred CCCCccccch-hhhccCCCCEEeCCCCCCcCc------------------------cCCcC-CCCCCCEEeCCCCCCccc
Confidence 6554444443 255566666666655432111 11111 233344444444433323
Q ss_pred CCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCC---C---cCCchh
Q 036375 540 IPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFS---G---PIPQNI 613 (1009)
Q Consensus 540 ~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~---~---~ip~~~ 613 (1009)
+|.. ..+|+.|++++|.+. .+|..+. +.+|+.|++.++... + .++...
T Consensus 720 ~p~~----~~nL~~L~L~~n~i~-~lP~~~~---------------------l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 720 FPDI----STNISWLDLDETAIE-EFPSNLR---------------------LENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred cccc----cCCcCeeecCCCccc-ccccccc---------------------ccccccccccccchhhccccccccchhh
Confidence 3321 234455555555443 2222111 234555555443211 0 111112
Q ss_pred hcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCC
Q 036375 614 SGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQ 693 (1009)
Q Consensus 614 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 693 (1009)
...+++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. .++|+
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~ 849 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNIS 849 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccC
Confidence 2234556666666665555566666666666666666654444445443 4556666666665444344332 24555
Q ss_pred EEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCC
Q 036375 694 SLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSN 749 (1009)
Q Consensus 694 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N 749 (1009)
.|+|++|.++ .+|.++..+++|+.|++++|+-...+|.... .+++|+.+++++|
T Consensus 850 ~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~-~L~~L~~L~l~~C 903 (1153)
T PLN03210 850 DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS-KLKHLETVDFSDC 903 (1153)
T ss_pred EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccc-cccCCCeeecCCC
Confidence 6666666555 3555555556666666655333334554443 2555555555555
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=8.2e-21 Score=241.31 Aligned_cols=339 Identities=24% Similarity=0.302 Sum_probs=234.0
Q ss_pred CcccccCCCccEEEccCCc------ccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCC--
Q 036375 517 PSWLKTQQGVSFLDFSNAS------ISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPI-- 588 (1009)
Q Consensus 517 ~~~l~~~~~L~~L~ls~n~------i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~-- 588 (1009)
+..|..+++|+.|.+..+. +...+|..+.....+|+.|.+.++.+. .+|..+....+..+++.++.+...-
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCCccCCcEEECcCccccccccc
Confidence 3456677777777775543 233456655555567888888777664 5566666677777777777664321
Q ss_pred CCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCC
Q 036375 589 PLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFL 668 (1009)
Q Consensus 589 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 668 (1009)
...+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 12457888889988776667774 4568889999998888777888888888899999998876555677655 78889
Q ss_pred CEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCccc------ccCchhhhhcCcCCc
Q 036375 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS------GNIPSLLGNGFVGLR 742 (1009)
Q Consensus 669 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~------~~ip~~l~~~l~~L~ 742 (1009)
+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+ .+++|+.|++.++... ..++......+++|+
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccch
Confidence 99999888766666643 367888889888876 566554 5678888888764321 011222222357888
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCC
Q 036375 743 ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSK 822 (1009)
Q Consensus 743 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1009)
.|++++|...+.+|..++++++|+.|++++|+..+.+|..+ ++++|
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL--------------------------------- 827 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL--------------------------------- 827 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc---------------------------------
Confidence 88998888777888888888899999998887666677654 34444
Q ss_pred CCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCC-cCCCCCcccccCCCCCC
Q 036375 823 DTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSN-NLSGGIPSSLSSLSFLG 901 (1009)
Q Consensus 823 ~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~~l~~l~~L~ 901 (1009)
+.|+|++|..-..+|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++| ++. .+|..+..++.|+
T Consensus 828 ------~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~ 896 (1153)
T PLN03210 828 ------ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLE 896 (1153)
T ss_pred ------CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCC
Confidence 66777776554445543 245677777777776 45667777777777777773 444 4666666777777
Q ss_pred eEeCCCCc
Q 036375 902 YINLSRNQ 909 (1009)
Q Consensus 902 ~L~ls~N~ 909 (1009)
.++++++.
T Consensus 897 ~L~l~~C~ 904 (1153)
T PLN03210 897 TVDFSDCG 904 (1153)
T ss_pred eeecCCCc
Confidence 77777664
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.8e-21 Score=225.30 Aligned_cols=242 Identities=29% Similarity=0.342 Sum_probs=159.5
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
.+++.|++++|+++ .+|. .+++|++|++++|+++.. |.. .++|+.|++++|.++. +|.. .++|+.|+
T Consensus 222 ~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~ 288 (788)
T PRK15387 222 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFSNPLTH-LPAL---PSGLCKLW 288 (788)
T ss_pred cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cCc---ccccceeeccCCchhh-hhhc---hhhcCEEE
Confidence 35666777777666 4553 246777777777777743 322 3567777777777763 3332 24567777
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS 752 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~ 752 (1009)
+++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.++ .+|.. ..+|+.|++++|+++
T Consensus 289 Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 289 IFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLA 355 (788)
T ss_pred CcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc----ccccceEecCCCccC
Confidence 77777773 3432 3567777777777774 3432 235667777777776 46642 356777777777777
Q ss_pred ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEE
Q 036375 753 GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFID 832 (1009)
Q Consensus 753 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 832 (1009)
.+|.. .++|+.|++++|++++ +|... . .++.|+
T Consensus 356 -~LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~---------------------------------------~L~~Ld 388 (788)
T PRK15387 356 -SLPTL---PSELYKLWAYNNRLTS-LPALP---S---------------------------------------GLKELI 388 (788)
T ss_pred -CCCCC---Ccccceehhhcccccc-Ccccc---c---------------------------------------ccceEE
Confidence 34542 2456677777777763 44321 1 226788
Q ss_pred ccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375 833 LSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912 (1009)
Q Consensus 833 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 912 (1009)
|++|+|++ +|... +.|+.|++++|+|++ +|... .+|+.|++++|+|+ .+|..+.+++.|++|++++|+|+|
T Consensus 389 Ls~N~Lt~-LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 389 VSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred ecCCcccC-CCCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 88888884 55432 568888888888885 55433 46778888888888 678888888888888888888888
Q ss_pred cCCC
Q 036375 913 KIPF 916 (1009)
Q Consensus 913 ~ip~ 916 (1009)
.+|.
T Consensus 460 ~~~~ 463 (788)
T PRK15387 460 RTLQ 463 (788)
T ss_pred hHHH
Confidence 7765
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=4.7e-21 Score=224.57 Aligned_cols=267 Identities=26% Similarity=0.380 Sum_probs=201.2
Q ss_pred ccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcC
Q 036375 526 VSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHF 605 (1009)
Q Consensus 526 L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l 605 (1009)
-..|+++++.++ .+|..+. ++++.|++.+|+++. +|..+++|++|++++|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~------------------------LP~lp~~Lk~LdLs~N~L 254 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS------------------------LPALPPELRTLEVSGNQL 254 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC------------------------CCCCCCCCcEEEecCCcc
Confidence 456777777776 4565543 356677777776653 233346889999999988
Q ss_pred CCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCcc
Q 036375 606 SGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPAS 685 (1009)
Q Consensus 606 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 685 (1009)
+ .+|. ..++|+.|++++|.++.. |.. .++|+.|++++|+++. +|. ..++|+.|++++|++++ +|..
T Consensus 255 t-sLP~----lp~sL~~L~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l 320 (788)
T PRK15387 255 T-SLPV----LPPGLLELSIFSNPLTHL-PAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL 320 (788)
T ss_pred C-cccC----cccccceeeccCCchhhh-hhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC
Confidence 8 5664 357899999999988743 332 3568899999999884 444 24689999999999986 4542
Q ss_pred ccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCC
Q 036375 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSL 765 (1009)
Q Consensus 686 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 765 (1009)
..+|+.|++++|++++ +|.. ..+|+.|+|++|+++ .+|.. ..+|+.|++++|+++ .+|.. .++|
T Consensus 321 ---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L 384 (788)
T PRK15387 321 ---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGL 384 (788)
T ss_pred ---cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---cccc
Confidence 2468889999999984 5532 257999999999998 67763 567889999999998 46754 3578
Q ss_pred CEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcc
Q 036375 766 QVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ 845 (1009)
Q Consensus 766 ~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~ 845 (1009)
+.|++++|++++ +|... +. ++.|++++|+|++ +|..
T Consensus 385 ~~LdLs~N~Lt~-LP~l~---s~---------------------------------------L~~LdLS~N~Lss-IP~l 420 (788)
T PRK15387 385 KELIVSGNRLTS-LPVLP---SE---------------------------------------LKELMVSGNRLTS-LPML 420 (788)
T ss_pred ceEEecCCcccC-CCCcc---cC---------------------------------------CCEEEccCCcCCC-CCcc
Confidence 999999999984 55322 12 3789999999985 6754
Q ss_pred ccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 036375 846 LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS 898 (1009)
Q Consensus 846 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 898 (1009)
. .+|+.|++++|+|+ .+|+.+.++++|+.|+|++|+++|.+|..+..+.
T Consensus 421 ~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 421 P---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred h---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 3 46788999999998 6799999999999999999999999998875543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=6.2e-22 Score=202.58 Aligned_cols=295 Identities=24% Similarity=0.266 Sum_probs=173.6
Q ss_pred EEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCC-C
Q 036375 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY-S 676 (1009)
Q Consensus 598 L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N 676 (1009)
.+.++-.++ .+|.++ .+.-+.++|..|+|+.+.+++|+.+++|+.|||++|+|+.+-|++|.++++|..|-+.+ |
T Consensus 51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 444444444 566543 34667788888888888888888888888888888888888888888888777766555 8
Q ss_pred cCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccc---
Q 036375 677 SLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG--- 753 (1009)
Q Consensus 677 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~--- 753 (1009)
+|+......|+++.+|+.|.+.-|++.-.....|..+++|..|.+.+|.+. .++...+..+.+++.+.+..|.+..
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccc
Confidence 888666677888888888888888888777777888888888888888886 6776555567777777777776431
Q ss_pred ---------cCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCC
Q 036375 754 ---------EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDT 824 (1009)
Q Consensus 754 ---------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1009)
..|..++.........+.++++...-+..|..- .+.+.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~-----------------------~esl~---------- 252 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS-----------------------LESLP---------- 252 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh-----------------------HHhHH----------
Confidence 111111111111111222222221111111100 00000
Q ss_pred CCceeEEEccCC-ccCCCCC-ccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCe
Q 036375 825 PRLFHFIDLSGN-NLHGDFP-TQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGY 902 (1009)
Q Consensus 825 ~~~l~~L~Ls~N-~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 902 (1009)
. .++.+ ...++-| ..|..|++|+.|+|++|+++++-+.+|.++..++.|.|..|+|...--..|.++..|++
T Consensus 253 ----s--~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t 326 (498)
T KOG4237|consen 253 ----S--RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT 326 (498)
T ss_pred ----H--hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence 0 01111 1222223 23566666666666666666666666666666666666666666555555666666666
Q ss_pred EeCCCCcceecCCCCC-CCCcccCCcCCCCCCCCC
Q 036375 903 INLSRNQLSGKIPFEG-HMTTFDASSFAGNPGLCG 936 (1009)
Q Consensus 903 L~ls~N~l~g~ip~~~-~~~~~~~~~~~~n~~lc~ 936 (1009)
|+|.+|+++..-|..- ...++....+.+||+.|.
T Consensus 327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred eeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 6666666665555321 112233344556666664
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=4.3e-19 Score=209.90 Aligned_cols=245 Identities=27% Similarity=0.443 Sum_probs=118.6
Q ss_pred ccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECC
Q 036375 595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLS 674 (1009)
Q Consensus 595 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 674 (1009)
...|+++++.++ .+|..+ .+.++.|++++|+++. +|..+. ++|++|++++|+++ .+|..+. .+|+.|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 344555555554 344322 2345555555555553 222221 34555555555555 2333332 245555555
Q ss_pred CCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccccc
Q 036375 675 YSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE 754 (1009)
Q Consensus 675 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~ 754 (1009)
+|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.++ .
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt-~ 318 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLT-A 318 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCccc-c
Confidence 55555 3444332 34555555555555 3444332 35555556555555 344432 234555555555555 2
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEcc
Q 036375 755 IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS 834 (1009)
Q Consensus 755 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 834 (1009)
+|..+. ++|+.|++++|.+++ +|..+. ++ ++.|+|+
T Consensus 319 LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~s---------------------------------------L~~L~Ls 354 (754)
T PRK15370 319 LPETLP--PGLKTLEAGENALTS-LPASLP--PE---------------------------------------LQVLDVS 354 (754)
T ss_pred CCcccc--ccceeccccCCcccc-CChhhc--Cc---------------------------------------ccEEECC
Confidence 333222 455556666665553 343221 11 2555666
Q ss_pred CCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccc----cCCCCCCeEeCCCCcc
Q 036375 835 GNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSL----SSLSFLGYINLSRNQL 910 (1009)
Q Consensus 835 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l----~~l~~L~~L~ls~N~l 910 (1009)
+|+|+ .+|..+. +.|+.|+|++|+|+. +|+.+. .+|+.|++++|+++ .+|..+ ..++.+..+++.+|++
T Consensus 355 ~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 355 KNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 66655 3444332 356666666666653 333333 24556666666665 233332 2335556666666665
Q ss_pred e
Q 036375 911 S 911 (1009)
Q Consensus 911 ~ 911 (1009)
+
T Consensus 428 s 428 (754)
T PRK15370 428 S 428 (754)
T ss_pred c
Confidence 4
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=4.2e-19 Score=210.04 Aligned_cols=246 Identities=27% Similarity=0.472 Sum_probs=172.1
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
..++.|++++|+++ .+|..++ ++|++|++++|+++. +|..+. .+|+.|++++|++. .+|..+. ++|+.|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 46778888888887 6676543 478888888888874 454442 46888888888887 5565553 4788888
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS 752 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~ 752 (1009)
+++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.++
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALT 338 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCccc
Confidence 8888888 4566553 578888888888884 555443 46888888888887 577654 467888888888887
Q ss_pred ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEE
Q 036375 753 GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFID 832 (1009)
Q Consensus 753 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 832 (1009)
+ +|..+. ++|+.|++++|+++ .+|..+. +. ++.|+
T Consensus 339 ~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~---------------------------------------L~~Ld 373 (754)
T PRK15370 339 S-LPASLP--PELQVLDVSKNQIT-VLPETLP--PT---------------------------------------ITTLD 373 (754)
T ss_pred c-CChhhc--CcccEEECCCCCCC-cCChhhc--CC---------------------------------------cCEEE
Confidence 4 666553 68888999988887 4564432 22 27888
Q ss_pred ccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCc----cCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375 833 LSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI----SGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908 (1009)
Q Consensus 833 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 908 (1009)
|++|+++ .+|..+. ..|+.|++++|+++ .+|+.+ +.++.+..|++.+|.++. ..+ ..|+.+ ++.+
T Consensus 374 Ls~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl---~~L~~L-l~s~ 442 (754)
T PRK15370 374 VSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---RTI---QNMQRL-MSSV 442 (754)
T ss_pred CCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---HHH---HHHHHh-hhcc
Confidence 9998888 4566554 36888889999888 445443 345778899999998873 233 333444 4556
Q ss_pred cceecC
Q 036375 909 QLSGKI 914 (1009)
Q Consensus 909 ~l~g~i 914 (1009)
.+.|++
T Consensus 443 ~~~gp~ 448 (754)
T PRK15370 443 GYQGPR 448 (754)
T ss_pred cccCCc
Confidence 666654
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=2e-19 Score=199.15 Aligned_cols=276 Identities=27% Similarity=0.324 Sum_probs=141.0
Q ss_pred EEccCCcCCCcCCchhhcCCCCccEEEccCCccccc----CCcccccCCCCCeEEccCCcCCc------cCcCcccCCCC
Q 036375 598 LDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGK----IPGSIGEMQLLQVIDLSRNSISG------SISSSIGNCTF 667 (1009)
Q Consensus 598 L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~ 667 (1009)
|+|.++.+++.--...+..++.|+++++++|.++.. ++..+...+++++++++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555555332234444556677777777766432 33344455667777777666552 22334555666
Q ss_pred CCEEECCCCcCcccCCccccCCCC---CCEEEccCccccC----CCchhhcCC-CCCCEEECcCCcccccCch----hhh
Q 036375 668 LKVLDLSYSSLSGVIPASLGQLTR---LQSLHLNNNKLTG----NLPSSFQNL-TSLETLDLGNNRFSGNIPS----LLG 735 (1009)
Q Consensus 668 L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~----~~p~~~~~l-~~L~~L~L~~N~l~~~ip~----~l~ 735 (1009)
|+.|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++..+. .+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 777777766666544444444443 6777776666652 222334445 6666666666666632222 222
Q ss_pred hcCcCCcEEEccCCccccc----CCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeec
Q 036375 736 NGFVGLRILSLRSNAFSGE----IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEE 811 (1009)
Q Consensus 736 ~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 811 (1009)
.+++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.....
T Consensus 163 -~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~----------------------- 218 (319)
T cd00116 163 -ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA----------------------- 218 (319)
T ss_pred -hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc-----------------------
Confidence 245566666666666532 2223344456666666666665332221111000
Q ss_pred eEEEeecCCCCCCCCceeEEEccCCccCCCCCccccC-----cCCCCeEEccCCcccc----cCCCCccCCCCCCEEeCC
Q 036375 812 NLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTK-----LVGLVVLNLSRNHIGG----QIPENISGLHQLASLDLS 882 (1009)
Q Consensus 812 ~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls 882 (1009)
..+.++.||+++|.+++.....+.. .+.|+.|++++|.++. .+.+.+..+++|+++|++
T Consensus 219 ------------~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 219 ------------SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred ------------ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence 0012255666666655432222211 2556666666666651 223344445566666666
Q ss_pred CCcCCCC----CcccccCC-CCCCeEeCCCCc
Q 036375 883 SNNLSGG----IPSSLSSL-SFLGYINLSRNQ 909 (1009)
Q Consensus 883 ~N~l~~~----ip~~l~~l-~~L~~L~ls~N~ 909 (1009)
+|.++.. ....+... +.|+++|+.+|+
T Consensus 287 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 287 GNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 6666633 33333333 456666666554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=2.6e-18 Score=190.30 Aligned_cols=255 Identities=25% Similarity=0.314 Sum_probs=191.0
Q ss_pred EEEccCCccc-ccCCcccccCCCCCeEEccCCcCCcc----CcCcccCCCCCCEEECCCCcCcc------cCCccccCCC
Q 036375 622 FLSVSGNRLT-GKIPGSIGEMQLLQVIDLSRNSISGS----ISSSIGNCTFLKVLDLSYSSLSG------VIPASLGQLT 690 (1009)
Q Consensus 622 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~ 690 (1009)
.|+|..+.++ ......+..+..|++|+++++.++.. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 5778888887 44556677788899999999998543 45567778889999999998873 2345677789
Q ss_pred CCCEEEccCccccCCCchhhcCCCC---CCEEECcCCccccc----CchhhhhcC-cCCcEEEccCCccccc----CCcc
Q 036375 691 RLQSLHLNNNKLTGNLPSSFQNLTS---LETLDLGNNRFSGN----IPSLLGNGF-VGLRILSLRSNAFSGE----IPSK 758 (1009)
Q Consensus 691 ~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~----ip~~l~~~l-~~L~~L~L~~N~l~~~----~p~~ 758 (1009)
+|+.|++++|.+.+..+..+..+.. |+.|++++|++++. +...+. .+ ++|+.|++++|.+++. ++..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 9999999999998777777766665 99999999998742 222333 25 8999999999999843 3445
Q ss_pred cCCCCCCCEEEccCCcCCCCCChhh-hhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCc
Q 036375 759 LSNLSSLQVLDLAENNLTGSIPGSV-GDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNN 837 (1009)
Q Consensus 759 l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~ 837 (1009)
+..+++|++|++++|.+++.....+ ..+... ..++.|+|++|.
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~------------------------------------~~L~~L~L~~n~ 204 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKAN------------------------------------CNLEVLDLNNNG 204 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhC------------------------------------CCCCEEeccCCc
Confidence 6778899999999999986321111 112111 123889999999
Q ss_pred cCCC----CCccccCcCCCCeEEccCCcccccCCCCcc-----CCCCCCEEeCCCCcCC----CCCcccccCCCCCCeEe
Q 036375 838 LHGD----FPTQLTKLVGLVVLNLSRNHIGGQIPENIS-----GLHQLASLDLSSNNLS----GGIPSSLSSLSFLGYIN 904 (1009)
Q Consensus 838 l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~L~ 904 (1009)
+++. ++..+..+++|++|++++|.+++.....+. ..+.|++|++++|.++ ..++..+..++.|+++|
T Consensus 205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 9865 344567788999999999999864333332 2479999999999997 23456677778999999
Q ss_pred CCCCcceec
Q 036375 905 LSRNQLSGK 913 (1009)
Q Consensus 905 ls~N~l~g~ 913 (1009)
+++|+++..
T Consensus 285 l~~N~l~~~ 293 (319)
T cd00116 285 LRGNKFGEE 293 (319)
T ss_pred CCCCCCcHH
Confidence 999999744
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=2.5e-18 Score=155.96 Aligned_cols=166 Identities=34% Similarity=0.620 Sum_probs=138.0
Q ss_pred CCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 036375 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL 695 (1009)
Q Consensus 616 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 695 (1009)
.+...+.|.+++|+++ .+|..++.+.+|+.|++++|++. ..|..++.++.|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3566777778888877 45556788888999999988887 67778888999999999998887 788889999999999
Q ss_pred EccCcccc-CCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 036375 696 HLNNNKLT-GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENN 774 (1009)
Q Consensus 696 ~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 774 (1009)
||.+|++. ..+|..|..++.|+.|+|++|.+. .+|..+++ +++|+.|.++.|.+. .+|..++.++.|++|.+.+|+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~-lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK-LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh-hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 99988886 457888888888999999999987 88888885 899999999999887 788888999999999999999
Q ss_pred CCCCCChhhhhhhh
Q 036375 775 LTGSIPGSVGDLKA 788 (1009)
Q Consensus 775 l~~~~p~~~~~l~~ 788 (1009)
++ .+|..++++.-
T Consensus 185 l~-vlppel~~l~l 197 (264)
T KOG0617|consen 185 LT-VLPPELANLDL 197 (264)
T ss_pred ee-ecChhhhhhhh
Confidence 88 67777776643
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=2.2e-17 Score=149.80 Aligned_cols=162 Identities=31% Similarity=0.564 Sum_probs=92.1
Q ss_pred CCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEE
Q 036375 689 LTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVL 768 (1009)
Q Consensus 689 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 768 (1009)
+...+.|.|++|+++ .+|..+..+.+|+.|++++|++. .+|..+.. ++.|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhhh
Confidence 344445555555555 34445555555555555555555 55555542 566666666666655 667777777777777
Q ss_pred EccCCcCCC-CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcccc
Q 036375 769 DLAENNLTG-SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLT 847 (1009)
Q Consensus 769 ~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~ 847 (1009)
||++|++.. .+|+.|.-++.| ..|.|+.|.|. .+|..++
T Consensus 108 dltynnl~e~~lpgnff~m~tl---------------------------------------ralyl~dndfe-~lp~dvg 147 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTL---------------------------------------RALYLGDNDFE-ILPPDVG 147 (264)
T ss_pred hccccccccccCCcchhHHHHH---------------------------------------HHHHhcCCCcc-cCChhhh
Confidence 777777653 455555555554 33345555554 4555566
Q ss_pred CcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccC
Q 036375 848 KLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSS 896 (1009)
Q Consensus 848 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 896 (1009)
++++|+.|.+..|.+- ..|..++.+++|+.|.+.+|+++ .+|..+++
T Consensus 148 ~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 148 KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 6666666666666555 34555556666666666666655 33444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=4.8e-15 Score=175.69 Aligned_cols=117 Identities=37% Similarity=0.590 Sum_probs=105.0
Q ss_pred eeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCC
Q 036375 828 FHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSR 907 (1009)
Q Consensus 828 l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 907 (1009)
++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++++++|++||+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceecCCCCC--CCCcccCCcCCCCCCCCCCCCCCCCC
Q 036375 908 NQLSGKIPFEG--HMTTFDASSFAGNPGLCGDPLPVKCQ 944 (1009)
Q Consensus 908 N~l~g~ip~~~--~~~~~~~~~~~~n~~lc~~~~~~~c~ 944 (1009)
|+++|.+|..- .........+.+|+.+||.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999742 12233345789999999987555674
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.41 E-value=7.1e-13 Score=157.29 Aligned_cols=101 Identities=31% Similarity=0.555 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCCccCCCCCCCC----CccceeecCC--CC--cEEEEecCCCCCCCCCCCCCCcCCEEe
Q 036375 31 NCSENDLDALIDFKNGLEDPESRLASWKGSNCC----QWHGISCDDD--TG--AIVAINLGNPYHVVNSDSSGSLLEYLD 102 (1009)
Q Consensus 31 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~c----~w~gv~c~~~--~~--~v~~l~l~~~~gi~~~l~~l~~L~~Ld 102 (1009)
.+.++|.+||+++|+++.+|.. .+|++..|| .|.||.|... .+ +|+.|+|+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~------------------- 426 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLD------------------- 426 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECC-------------------
Confidence 4567899999999999876642 489876563 7999999632 22 35565554
Q ss_pred CCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCc
Q 036375 103 LSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAE 155 (1009)
Q Consensus 103 Ls~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~ 155 (1009)
+|.+.+ .+|..++.+++|++|+|++|.+.|.+|..++++++|++|++++|
T Consensus 427 --~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N 476 (623)
T PLN03150 427 --NQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN 476 (623)
T ss_pred --CCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC
Confidence 444444 44555555555555555555555555555555555555555544
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=3e-13 Score=145.76 Aligned_cols=196 Identities=28% Similarity=0.483 Sum_probs=152.2
Q ss_pred CCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcE
Q 036375 664 NCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRI 743 (1009)
Q Consensus 664 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~ 743 (1009)
.+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|+.+||+.|+++ .+|..++ .--|+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence 3455567889999998 67888888888999999999887 78888999999999999999998 8888876 455888
Q ss_pred EEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCC
Q 036375 744 LSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKD 823 (1009)
Q Consensus 744 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1009)
|-+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl---------------------------------- 191 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL---------------------------------- 191 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH----------------------------------
Confidence 999999887 78888888888889999999887 677788888877
Q ss_pred CCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCccccc---CCCCC
Q 036375 824 TPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLS---SLSFL 900 (1009)
Q Consensus 824 ~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L 900 (1009)
..|.+..|++. ..|+++..|+ |..||+|.|+++ .||-.|.+|+.|++|-|.+|.|. ..|..+. ...-.
T Consensus 192 -----r~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 192 -----RDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIF 262 (722)
T ss_pred -----HHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeee
Confidence 34455556555 4566777544 778888888888 67888888888888888888887 4455543 34445
Q ss_pred CeEeCCCCc
Q 036375 901 GYINLSRNQ 909 (1009)
Q Consensus 901 ~~L~ls~N~ 909 (1009)
++|+..-.+
T Consensus 263 KyL~~qA~q 271 (722)
T KOG0532|consen 263 KYLSTQACQ 271 (722)
T ss_pred eeecchhcc
Confidence 667766664
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=6.3e-13 Score=143.36 Aligned_cols=180 Identities=31% Similarity=0.491 Sum_probs=151.1
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
..-...|++.|++. .+|..++ .+..|+.+.++.|.+. .+|.+++++..|..++|+.|+++ ..|..++.|+ |+.|-
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred cchhhhhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 44567788888887 7887665 4677888888888887 67788899999999999999998 6777888886 89999
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS 752 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~ 752 (1009)
+++|+++ .+|+.++.++.|..||.+.|.+. .+|..+.++.+|+.|.+..|++. .+|..+. .-.|..||++.|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeecccCcee
Confidence 9999998 67888888889999999999988 67888999999999999999998 8888876 456888999999998
Q ss_pred ccCCcccCCCCCCCEEEccCCcCCCCCChhhh
Q 036375 753 GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVG 784 (1009)
Q Consensus 753 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 784 (1009)
.+|-.|.+|+.|++|-|.+|++. ..|.++.
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 88999999999999999999997 4455443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=4e-11 Score=136.64 Aligned_cols=123 Identities=37% Similarity=0.613 Sum_probs=74.5
Q ss_pred eEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCC-CCCEEEccCccccCCCchhhcCCCCCCEEECcCC
Q 036375 646 VIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLT-RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724 (1009)
Q Consensus 646 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 724 (1009)
.++++.|.+...+ ..+...+.++.|++.+|.++. +|....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666653222 234444667777777777773 444444443 6777777777776 45555667777777777777
Q ss_pred cccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCc
Q 036375 725 RFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENN 774 (1009)
Q Consensus 725 ~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 774 (1009)
++. .+|.... ..+.|+.|++++|++. .+|........|+++++++|+
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 776 5555543 2566666666666666 455544445556666666664
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=4.4e-11 Score=136.33 Aligned_cols=148 Identities=36% Similarity=0.530 Sum_probs=79.8
Q ss_pred EEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCC-CCCEEECCCCcCcccCCccccCCCCCCEEEccCc
Q 036375 622 FLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCT-FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNN 700 (1009)
Q Consensus 622 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 700 (1009)
.+++..|.+...+. .+...+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 45555555532221 2233355666666666666 3333444443 6666666666666 33344556666666666666
Q ss_pred cccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375 701 KLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 701 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 776 (1009)
+++ .+|......+.|+.|++++|++. .+|.... ....|+.+.+++|+.. .++..+.++.++..+.+++|++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee
Confidence 666 34444445566666666666665 5665542 1444666666666432 33444555555555555555443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.2e-10 Score=122.52 Aligned_cols=85 Identities=29% Similarity=0.305 Sum_probs=47.3
Q ss_pred eEEEccCCccCCCC-CccccCcCCCCeEEccCCccccc-CCCC-----ccCCCCCCEEeCCCCcCCCC-CcccccCCCCC
Q 036375 829 HFIDLSGNNLHGDF-PTQLTKLVGLVVLNLSRNHIGGQ-IPEN-----ISGLHQLASLDLSSNNLSGG-IPSSLSSLSFL 900 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L 900 (1009)
+.|||++|++-... -...+.++.|..|+++.+.+..+ +|+. .....+|++|++++|++... --..+..+.+|
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL 328 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh
Confidence 45555555554221 12355666677777777776643 2322 34566777777777777521 11223345566
Q ss_pred CeEeCCCCcceec
Q 036375 901 GYINLSRNQLSGK 913 (1009)
Q Consensus 901 ~~L~ls~N~l~g~ 913 (1009)
..|....|.|+-+
T Consensus 329 k~l~~~~n~ln~e 341 (505)
T KOG3207|consen 329 KHLRITLNYLNKE 341 (505)
T ss_pred hhhhccccccccc
Confidence 6666667766543
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.3e-10 Score=120.34 Aligned_cols=164 Identities=21% Similarity=0.170 Sum_probs=83.3
Q ss_pred cCCCCCCeEEcCCccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchh-hhhcC
Q 036375 168 TGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPN-WLVNI 246 (1009)
Q Consensus 168 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~l~~l 246 (1009)
..|+.++.|+++.|-+..... +......+|+|+.|+|+.|++...........+++|+.|.++.|.++..--. .+..+
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 334555555555544444322 4444566777777777777665544444334556666666666666533222 23356
Q ss_pred CCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEccccccccc-CCcc-----ccCC
Q 036375 247 STLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGK-LPSS-----VANM 320 (1009)
Q Consensus 247 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~-----l~~l 320 (1009)
++|+.|+|..|.....-.....-+..|++|+|++|++ .....-...+.++.|+.|+++.|.+... .|+. ...+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 6666666666642222222233445566666666653 2222223345555566666655554431 1211 2344
Q ss_pred CCCCEEEccCCcc
Q 036375 321 TSLTNFDLFDKKV 333 (1009)
Q Consensus 321 ~~L~~L~l~~n~~ 333 (1009)
++|+.|++..|++
T Consensus 301 ~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 301 PKLEYLNISENNI 313 (505)
T ss_pred ccceeeecccCcc
Confidence 5555555555555
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=2.9e-10 Score=113.21 Aligned_cols=84 Identities=31% Similarity=0.390 Sum_probs=56.0
Q ss_pred eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCC-CcccccCCCCCCeEeCCC
Q 036375 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGG-IPSSLSSLSFLGYINLSR 907 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~L~ls~ 907 (1009)
+.||||+|.++. +-..=.++-+.+.|+|+.|.+... ..++++-+|..||++.|+|... .-..+++++-|+.+.+.+
T Consensus 332 ~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 332 QLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 444555554441 222223445567788888877644 4577788888888888888743 225678888889999999
Q ss_pred CcceecCC
Q 036375 908 NQLSGKIP 915 (1009)
Q Consensus 908 N~l~g~ip 915 (1009)
|++.+.+-
T Consensus 409 NPl~~~vd 416 (490)
T KOG1259|consen 409 NPLAGSVD 416 (490)
T ss_pred CCccccch
Confidence 98887643
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=2.5e-10 Score=113.66 Aligned_cols=131 Identities=31% Similarity=0.325 Sum_probs=82.3
Q ss_pred cccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCC
Q 036375 343 RLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPAS 422 (1009)
Q Consensus 343 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 422 (1009)
..+.|+++|+++|.++..... .. -.|.++.|++++|.+... ..+..+++|+.|||++|.++ .+..+
T Consensus 282 TWq~LtelDLS~N~I~~iDES-vK----------L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gw 347 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDES-VK----------LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGW 347 (490)
T ss_pred hHhhhhhccccccchhhhhhh-hh----------hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhh
Confidence 344566666666665532211 11 356777777777776632 23666777777777777766 33444
Q ss_pred CCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCccc
Q 036375 423 LGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFI 489 (1009)
Q Consensus 423 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 489 (1009)
-..+-++++|.|++|.+... ..++.+-+|..||+++|++...-....++++|-|+.+.+.+|++.
T Consensus 348 h~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred HhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55667777777777776533 346667777777777777765444445677777777777777664
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.3e-09 Score=105.47 Aligned_cols=16 Identities=44% Similarity=0.806 Sum_probs=2.8
Q ss_pred CCCCCCEEEccCcccc
Q 036375 688 QLTRLQSLHLNNNKLT 703 (1009)
Q Consensus 688 ~l~~L~~L~L~~N~l~ 703 (1009)
.++.|+.|++++|+++
T Consensus 62 ~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRIS 77 (175)
T ss_dssp --TT--EEE--SS---
T ss_pred ChhhhhhcccCCCCCC
Confidence 3333444444444433
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.90 E-value=3.6e-10 Score=115.79 Aligned_cols=110 Identities=26% Similarity=0.306 Sum_probs=63.3
Q ss_pred CCCcEEECcCCcCcc----cCChhhcCCCCCCEEeCcCCcccccC----CCCCCCCCCCcEEeCCCCcCCCCCCccc---
Q 036375 379 PSLISMRLGNNHLKG----KLPEWLSQLENLVELTLSYNLLQGPI----PASLGNLKNLTKLNLPGNQLNGTLPETL--- 447 (1009)
Q Consensus 379 ~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~l--- 447 (1009)
+.|+++.+..|.+.. .+...+..|++|+.|||.+|.++... ...+..+++|+.|++++|.+...-...+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 445555555554431 12334666777777777777665321 2344556677777777777664332222
Q ss_pred --CCCCCCCEEEccCcccccc---cchhhhccCCCCcEEeCCCCcc
Q 036375 448 --GSLPELSVLDVSSNSLTGI---ISEIHFSRLSKLKFLGLSSNSF 488 (1009)
Q Consensus 448 --~~l~~L~~L~Ls~n~l~~~---~~~~~~~~l~~L~~L~L~~n~l 488 (1009)
...|+|+.|.+.+|.++.. .........+.|+.|++++|.+
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2357777777777776632 1122344567777777777766
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.87 E-value=1.1e-10 Score=119.54 Aligned_cols=66 Identities=29% Similarity=0.407 Sum_probs=36.2
Q ss_pred hhcCCCCCCEEeCcCCcccccCCCCC-----CCCCCCcEEeCCCCcCCCC----CCcccCCCCCCCEEEccCccc
Q 036375 398 WLSQLENLVELTLSYNLLQGPIPASL-----GNLKNLTKLNLPGNQLNGT----LPETLGSLPELSVLDVSSNSL 463 (1009)
Q Consensus 398 ~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l 463 (1009)
.+..+++|++|++++|.+......+| ...++|++|.+.+|.++.. +...+...+.|+.|+|++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 34455566666666665553322221 2356667777777666532 112234466777777777776
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=3.9e-10 Score=128.47 Aligned_cols=248 Identities=27% Similarity=0.341 Sum_probs=143.7
Q ss_pred CCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 036375 617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH 696 (1009)
Q Consensus 617 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 696 (1009)
+..++.+.+..|.+.. +-..++.+++|+.|++.+|++..+. ..+..+++|++|++++|+|+.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 4445555555555553 2223555666777777777766432 2256667777777777777655 2355566677777
Q ss_pred ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375 697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 776 (1009)
+++|.++.. ..+..++.|+.+++++|.+. .+.......+.+++.+.+.+|.+.. ...+..+..+..+++..|.++
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence 777777633 34555667777777777776 3333101236667777777776642 223344444455566666665
Q ss_pred CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEE
Q 036375 777 GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLN 856 (1009)
Q Consensus 777 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 856 (1009)
..-+.. .+..+ .++.+++++|.+. .++..+..+..+..|+
T Consensus 222 ~~~~l~--~~~~~-------------------------------------~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~ 261 (414)
T KOG0531|consen 222 KLEGLN--ELVML-------------------------------------HLRELYLSGNRIS-RSPEGLENLKNLPVLD 261 (414)
T ss_pred eccCcc--cchhH-------------------------------------HHHHHhcccCccc-cccccccccccccccc
Confidence 321110 00000 1255667777776 3335566777788888
Q ss_pred ccCCcccccCCCCccCCCCCCEEeCCCCcCCCC---Cccc-ccCCCCCCeEeCCCCcceecCC
Q 036375 857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSGG---IPSS-LSSLSFLGYINLSRNQLSGKIP 915 (1009)
Q Consensus 857 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---ip~~-l~~l~~L~~L~ls~N~l~g~ip 915 (1009)
++.|++... ..+.....+..+.++.|.+... .... .+....+....+.+|+.....+
T Consensus 262 ~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 262 LSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 888887754 3455566677777777776521 1121 4556777888888887776554
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=5e-09 Score=101.43 Aligned_cols=125 Identities=32% Similarity=0.410 Sum_probs=49.6
Q ss_pred ccCCCCCCEEECCCCcCcccCCcccc-CCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcC
Q 036375 662 IGNCTFLKVLDLSYSSLSGVIPASLG-QLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVG 740 (1009)
Q Consensus 662 l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~ 740 (1009)
+.++..+++|+|++|.|+.+ +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+++ .++..+...+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 45566789999999999854 3465 578999999999999854 36888999999999999998 676655445899
Q ss_pred CcEEEccCCcccccC-CcccCCCCCCCEEEccCCcCCCCCCh----hhhhhhhhhhc
Q 036375 741 LRILSLRSNAFSGEI-PSKLSNLSSLQVLDLAENNLTGSIPG----SVGDLKAMAHV 792 (1009)
Q Consensus 741 L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~~ 792 (1009)
|+.|++++|++...- -..+..+++|+.|++.+|+++.. +. .+..+++|+.+
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhhee
Confidence 999999999997522 24577899999999999999844 32 34455555443
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=6.2e-10 Score=126.79 Aligned_cols=220 Identities=32% Similarity=0.377 Sum_probs=157.5
Q ss_pred ccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCE
Q 036375 639 GEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLET 718 (1009)
Q Consensus 639 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 718 (1009)
..+..++.+.+..|.+.. +-..+..+++|+.|++.+|+|..+.. .+..+++|++|++++|.|+.. ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhh
Confidence 446677788888888874 33457788899999999999986532 267788999999999999865 34667777999
Q ss_pred EECcCCcccccCchhhhhcCcCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhh
Q 036375 719 LDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP-SKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVK 797 (1009)
Q Consensus 719 L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~ 797 (1009)
|++++|.+. .++..- .++.|+.+++++|.+...-+ . ...+.+++.+++++|.+... ..+..+..+
T Consensus 145 L~l~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l-------- 210 (414)
T KOG0531|consen 145 LNLSGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKL-------- 210 (414)
T ss_pred heeccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHH--------
Confidence 999999987 555432 27888889999998874433 2 56778888888888887632 122222222
Q ss_pred hhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcC--CCCeEEccCCcccccCCCCccCCCC
Q 036375 798 YLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLV--GLVVLNLSRNHIGGQIPENISGLHQ 875 (1009)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~l~~l~~ 875 (1009)
..+++..|.++-.-+ +..+. .|+.+++++|++. .+++.+..+..
T Consensus 211 -------------------------------~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~ 256 (414)
T KOG0531|consen 211 -------------------------------VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKN 256 (414)
T ss_pred -------------------------------HHhhcccccceeccC--cccchhHHHHHHhcccCccc-ccccccccccc
Confidence 334677777764322 12222 3889999999998 44467888899
Q ss_pred CCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375 876 LASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912 (1009)
Q Consensus 876 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 912 (1009)
+..||+++|++... ..+.....+..+....|.+..
T Consensus 257 l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 257 LPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLAL 291 (414)
T ss_pred ccccchhhcccccc--ccccccchHHHhccCcchhcc
Confidence 99999999999865 345566778888888888763
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=3.2e-09 Score=84.29 Aligned_cols=60 Identities=42% Similarity=0.598 Sum_probs=41.1
Q ss_pred CCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcc
Q 036375 851 GLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL 910 (1009)
Q Consensus 851 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 910 (1009)
+|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 466677777777766666667777777777777777666666677777777777777654
No 40
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.76 E-value=7.6e-09 Score=74.76 Aligned_cols=38 Identities=45% Similarity=1.018 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhcCC-CCCCCccCCCC---CCCCCccceeec
Q 036375 34 ENDLDALIDFKNGLE-DPESRLASWKG---SNCCQWHGISCD 71 (1009)
Q Consensus 34 ~~~~~~ll~~k~~~~-~~~~~~~~W~~---~~~c~w~gv~c~ 71 (1009)
++|++||++||+++. +|.+.+.+|+. ++||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999999 67788999983 689999999996
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=7.3e-09 Score=125.62 Aligned_cols=85 Identities=29% Similarity=0.314 Sum_probs=41.2
Q ss_pred hcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCC
Q 036375 194 LKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNL 273 (1009)
Q Consensus 194 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 273 (1009)
+..++.|++|||++|.--+..|..+ +.+-+|++|++++..+. .+|..+.+++.|.+|++..+.....+|.....+++|
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 4445555555555544444444443 44555555555555544 234555555555555555554433344333445555
Q ss_pred CEEEcCC
Q 036375 274 QYLSLAG 280 (1009)
Q Consensus 274 ~~L~L~~ 280 (1009)
++|.+..
T Consensus 645 r~L~l~~ 651 (889)
T KOG4658|consen 645 RVLRLPR 651 (889)
T ss_pred cEEEeec
Confidence 5555443
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.5e-10 Score=112.76 Aligned_cols=198 Identities=20% Similarity=0.183 Sum_probs=105.7
Q ss_pred cCCEEeCCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCCCCCeE
Q 036375 97 LLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHL 176 (1009)
Q Consensus 97 ~L~~LdLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L 176 (1009)
.|++||||...++...+-..++.|.+|+.|.|.++.+.+.+-..+++-.+|+.||++.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-------------------- 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-------------------- 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--------------------
Confidence 478888888777654444556677788888888887777776777777777777777762
Q ss_pred EcCCccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCC-CCCCcEEECCCCCC---CCCchhhhhcCCCCcEE
Q 036375 177 AMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVN-LTSPAVLDLSLNHF---NSLFPNWLVNISTLVYV 252 (1009)
Q Consensus 177 ~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~~---~~~~p~~l~~l~~L~~L 252 (1009)
.++. ...--.+.+|+.|.+|+|++|.+..++....... -++|..|+++++.- ...+..-.
T Consensus 246 -----G~t~--n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~--------- 309 (419)
T KOG2120|consen 246 -----GFTE--NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV--------- 309 (419)
T ss_pred -----ccch--hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH---------
Confidence 1111 1123345677777777777777655442221111 12344444444321 01111112
Q ss_pred EccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCc---cccCCCCCCEEEcc
Q 036375 253 DLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPS---SVANMTSLTNFDLF 329 (1009)
Q Consensus 253 ~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~---~l~~l~~L~~L~l~ 329 (1009)
.++++|.+|||+.|..... .....+.+++.|++|.++.|. +.+|. .+...|.|.+|++.
T Consensus 310 ---------------~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 310 ---------------RRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred ---------------HhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEec
Confidence 2445555555554432222 222233345555555555553 23343 34567788888877
Q ss_pred CCcccccCchhhhcccCCC
Q 036375 330 DKKVEGGIPSSIARLCYLK 348 (1009)
Q Consensus 330 ~n~~~~~~~~~l~~l~~L~ 348 (1009)
++--.+...-....+++|+
T Consensus 372 g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 372 GCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred cccCchHHHHHHHhCcccc
Confidence 6644333333334445544
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=1.9e-08 Score=79.86 Aligned_cols=60 Identities=38% Similarity=0.494 Sum_probs=56.6
Q ss_pred ceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcC
Q 036375 827 LFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNL 886 (1009)
Q Consensus 827 ~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 886 (1009)
.++.|++++|+++...+..|.++++|++|++++|+++...|++|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 358999999999988888999999999999999999999999999999999999999986
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.60 E-value=1.1e-07 Score=115.66 Aligned_cols=274 Identities=27% Similarity=0.285 Sum_probs=170.8
Q ss_pred CCccEEEccCCcC-CCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEE
Q 036375 593 VEIELLDLSNNHF-SGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVL 671 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 671 (1009)
+.|++|-+..|.. ...++..+|..++.|.+||+++|.-.+..|..++++-+|++|++++..+. .+|..++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 4688888888862 34788888999999999999999888899999999999999999999998 789999999999999
Q ss_pred ECCCCcCcccCCccccCCCCCCEEEccCccc--cCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCC----cEEE
Q 036375 672 DLSYSSLSGVIPASLGQLTRLQSLHLNNNKL--TGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGL----RILS 745 (1009)
Q Consensus 672 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L----~~L~ 745 (1009)
++..+.....+|.....+++|++|.+..-.. +...-..+..+..|+.+....... .+-..+. .++.| +.+.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~-~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLL-GMTRLRSLLQSLS 700 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhh-hhHHHHHHhHhhh
Confidence 9999887777788778899999999976542 223334456666666666643332 0111111 12222 2333
Q ss_pred ccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCC
Q 036375 746 LRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTP 825 (1009)
Q Consensus 746 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1009)
+.++... ..+..+..+.+|+.|.+.++.++............+..+.+....... +...........++
T Consensus 701 ~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~----------~~~~~r~l~~~~f~ 769 (889)
T KOG4658|consen 701 IEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSIL----------NCHMLRDLTWLLFA 769 (889)
T ss_pred hcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhh----------ccccccccchhhcc
Confidence 3333333 445567889999999999998864333221111111000000000000 00000001111345
Q ss_pred CceeEEEccCCccCCCCCccccCcCCCCeEEccCCccccc-CCCCccCCCCCCEEeC
Q 036375 826 RLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQ-IPENISGLHQLASLDL 881 (1009)
Q Consensus 826 ~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L 881 (1009)
..++.|.+.+...-..+.+....+..++.+-+..+.+.+. .-...++++++..+.+
T Consensus 770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence 5667777777666666655566666666666666666665 3344444554444443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=4.5e-09 Score=116.92 Aligned_cols=103 Identities=26% Similarity=0.245 Sum_probs=71.2
Q ss_pred eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 908 (1009)
+.||||+|+++... .+..+..|++|||++|.++-..--...++. |+.|++++|.++.. ..+.+|.+|+.||||+|
T Consensus 190 e~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 190 ESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred hhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHh
Confidence 77888888887544 677888888888888888854333344444 88888888888754 46678888888888888
Q ss_pred cceecCC--CCCCCCcccCCcCCCCCCCCC
Q 036375 909 QLSGKIP--FEGHMTTFDASSFAGNPGLCG 936 (1009)
Q Consensus 909 ~l~g~ip--~~~~~~~~~~~~~~~n~~lc~ 936 (1009)
-|++.-- ....+..+....++|||.-|.
T Consensus 265 ll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 265 LLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 7776421 112233445566788887773
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.4e-09 Score=105.93 Aligned_cols=161 Identities=20% Similarity=0.156 Sum_probs=93.7
Q ss_pred hhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCC-CCCCc-hhhhhcCCCCcEEEccCCcCcccCCcc-cCC
Q 036375 193 ILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNH-FNSLF-PNWLVNISTLVYVDLSDCDLYGRIPIG-FGE 269 (1009)
Q Consensus 193 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~-l~~ 269 (1009)
.++.|.+|+.|.|.++++.+.+...+ +.-..|+.|+++.+. ++... .-.+.+|+.|..|+|+.|......-.. +..
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence 33444444444444444444333322 333444444444432 11111 113456777777777777654332111 111
Q ss_pred -CCCCCEEEcCCCCCCC-CcccccccCCCCCccEEEccccc-ccccCCccccCCCCCCEEEccCCcccccCchh---hhc
Q 036375 270 -LPNLQYLSLAGNNNLS-GSCSQLFRGSWKKIQILNFASNK-LHGKLPSSVANMTSLTNFDLFDKKVEGGIPSS---IAR 343 (1009)
Q Consensus 270 -l~~L~~L~L~~n~~~~-~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~---l~~ 343 (1009)
-++|+.|+++|+.... ...+......+++|..||+++|. +....-..|.+++.|++|.++.|-. .+|.. +..
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s 361 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNS 361 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeecc
Confidence 2568888888875322 22344556789999999999985 4434445677899999999998853 35554 456
Q ss_pred ccCCCEEEcCCCc
Q 036375 344 LCYLKEFDLSGNN 356 (1009)
Q Consensus 344 l~~L~~L~l~~n~ 356 (1009)
.+.|.+|++.++-
T Consensus 362 ~psl~yLdv~g~v 374 (419)
T KOG2120|consen 362 KPSLVYLDVFGCV 374 (419)
T ss_pred CcceEEEEecccc
Confidence 7889999999874
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=7.9e-09 Score=115.04 Aligned_cols=180 Identities=29% Similarity=0.296 Sum_probs=116.0
Q ss_pred CccccCCCCCCEEEccCccccCCCchhhcCC-CCCCEEECcCCccc----------ccCchhhhhcCcCCcEEEccCCcc
Q 036375 683 PASLGQLTRLQSLHLNNNKLTGNLPSSFQNL-TSLETLDLGNNRFS----------GNIPSLLGNGFVGLRILSLRSNAF 751 (1009)
Q Consensus 683 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~----------~~ip~~l~~~l~~L~~L~L~~N~l 751 (1009)
|-.+....+|++|.+.++.+.. ..++..+ ..|+.|- ..|.+. |.+..... ...|...+.++|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence 4456677899999999999873 1222222 2344332 222221 11111110 13466777888888
Q ss_pred cccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEE
Q 036375 752 SGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFI 831 (1009)
Q Consensus 752 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 831 (1009)
. .....+.-++.|+.|||++|+++..- .+..+..| +.|
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~L---------------------------------------khL 214 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKL---------------------------------------KHL 214 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccc---------------------------------------ccc
Confidence 7 45566777888888999999887431 33334433 788
Q ss_pred EccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCC-cccccCCCCCCeEeCCCCcc
Q 036375 832 DLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGI-PSSLSSLSFLGYINLSRNQL 910 (1009)
Q Consensus 832 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~l 910 (1009)
|||+|.++...--.-..++ |+.|++++|.++.. ..+.+|.+|+.||+|+|-|++.- -..+..|.+|..|+|.+|++
T Consensus 215 DlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 215 DLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 8899988843322333444 88899999988755 45778888999999999887641 13345677888889999988
Q ss_pred ee
Q 036375 911 SG 912 (1009)
Q Consensus 911 ~g 912 (1009)
..
T Consensus 292 ~c 293 (1096)
T KOG1859|consen 292 CC 293 (1096)
T ss_pred cc
Confidence 64
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.20 E-value=5.4e-08 Score=102.30 Aligned_cols=302 Identities=17% Similarity=0.110 Sum_probs=144.9
Q ss_pred cCCEEeCCCCCCCCC-CCCcccCCCCCCceeecccCCCC-ccCCCCC-CCCCCCCeeeCCCccccccCCCcccc-cCCCC
Q 036375 97 LLEYLDLSFNTFNDI-PIPEFLGSLENLQYLNLSEAGFT-GVVPSSL-GNLHRLQYFDVSAELFALSADSLDWL-TGLVS 172 (1009)
Q Consensus 97 ~L~~LdLs~~~~~~~-~lp~~i~~l~~L~~L~Ls~~~~~-~~lp~~l-~~L~~L~~L~Ls~~~~~~~~~~~~~l-~~l~~ 172 (1009)
.||.|.+.++.-.+. ++-.+-.+++++++|++.+|... +..-.++ ..+++|++|++..|. .+....+..+ ..+++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~-~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS-SITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc-hhHHHHHHHHHHhhhh
Confidence 456666666543221 22334456666666666666422 1111112 346666666666642 1111222222 23666
Q ss_pred CCeEEcCCccCCCCcchhhhhhcCCCCccEEEcCCCcCCC-CCCCCCCCCCCCCcEEECCCCC-CCCCchhhh-hcCCCC
Q 036375 173 LKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTG-SITSITPVNLTSPAVLDLSLNH-FNSLFPNWL-VNISTL 249 (1009)
Q Consensus 173 L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~-~~~~~p~~l-~~l~~L 249 (1009)
|++++++.++--.. ..+-...+++..++.+.+.+|.-.+ +.-....+.+..+-++++..+. +++..-..+ ..+..|
T Consensus 218 L~~lNlSwc~qi~~-~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG-NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHHhhhccCchhhc-CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 66666666542221 1133344556666666666553111 1111111233334444444442 222211111 245667
Q ss_pred cEEEccCCcCcccCC-ccc-CCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccc--cCCccccCCCCCCE
Q 036375 250 VYVDLSDCDLYGRIP-IGF-GELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHG--KLPSSVANMTSLTN 325 (1009)
Q Consensus 250 ~~L~L~~n~~~~~~p-~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~ 325 (1009)
+.|+.++|...+..+ .++ .++.+|+.|.+++|+..........-.+++.|+.+++..+.... .+..--.+++.|++
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 777777665432211 122 34567777777777654444455555566777777777664321 12222235677777
Q ss_pred EEccCCcccccC-----chhhhcccCCCEEEcCCCcCCCCC-CccccccccccCCCCCCCCCcEEECcCCcCcc--cCCh
Q 036375 326 FDLFDKKVEGGI-----PSSIARLCYLKEFDLSGNNLTGSL-PEILQGTDLCVSSNSPLPSLISMRLGNNHLKG--KLPE 397 (1009)
Q Consensus 326 L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~ 397 (1009)
+.+++|...... ...-..+..|+.+.++++..+... -+.+. .+++|+.+++.+++-.. .+..
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~----------~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS----------ICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh----------hCcccceeeeechhhhhhhhhHH
Confidence 777766543221 111233456777777777644211 11111 46677777777765321 1222
Q ss_pred hhcCCCCCCEEeC
Q 036375 398 WLSQLENLVELTL 410 (1009)
Q Consensus 398 ~l~~l~~L~~L~L 410 (1009)
.-.++|+++...+
T Consensus 447 ~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 447 FATHLPNIKVHAY 459 (483)
T ss_pred HHhhCccceehhh
Confidence 3345666665543
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.13 E-value=1.4e-07 Score=99.17 Aligned_cols=207 Identities=15% Similarity=0.128 Sum_probs=114.1
Q ss_pred CCCceeecccCCCCccCC--CCCCCCCCCCeeeCCCccccccCCCcccccC-CCCCCeEEcCCc-cCCCCcchhhhhhcC
Q 036375 121 ENLQYLNLSEAGFTGVVP--SSLGNLHRLQYFDVSAELFALSADSLDWLTG-LVSLKHLAMNRV-DLSLVGSEWLGILKN 196 (1009)
Q Consensus 121 ~~L~~L~Ls~~~~~~~lp--~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~-l~~L~~L~l~~~-~l~~~~~~~~~~l~~ 196 (1009)
..|+.|.++++.-.+.-+ ....+++++++|++.++. ...+.....+.+ +++|+++++..+ .++. ..+......
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT~--~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSITD--VSLKYLAEG 214 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhHH--HHHHHHHHh
Confidence 468899999987554322 234678999999999985 444455555555 888999888774 3333 111223467
Q ss_pred CCCccEEEcCCCc-CCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhh----hcCCCCcEEEccCCcCcccCC--cccCC
Q 036375 197 LPNLTELHLSVCG-LTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWL----VNISTLVYVDLSDCDLYGRIP--IGFGE 269 (1009)
Q Consensus 197 l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l----~~l~~L~~L~L~~n~~~~~~p--~~l~~ 269 (1009)
+++|+++++++|. +.+.-......++..++.+.+.+|.-.+ .+.+ +.+..+..+++..|....... ..-..
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 8899999999884 5543333444556666666666543221 1222 234445666666664322111 11124
Q ss_pred CCCCCEEEcCCCCCCCCcccccccCCCCCccEEEccccc-ccccCCcccc-CCCCCCEEEccCCc
Q 036375 270 LPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNK-LHGKLPSSVA-NMTSLTNFDLFDKK 332 (1009)
Q Consensus 270 l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~l~-~l~~L~~L~l~~n~ 332 (1009)
+..||.|+.+++.......+.....++.+|++|.++.|+ |+..--..++ +++.|+.+++..+.
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 566777777766432222233334455666666666664 2211111121 44555555555543
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=9.1e-07 Score=88.88 Aligned_cols=64 Identities=30% Similarity=0.330 Sum_probs=41.2
Q ss_pred CCCCCeEEcCCccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCC
Q 036375 170 LVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHF 235 (1009)
Q Consensus 170 l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~ 235 (1009)
++.++++++..|.++...+ +...+.++|.|+.|+|+.|++...|.... ....+|++|-|.+..+
T Consensus 70 ~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhhcccchhccHHH-HHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCC
Confidence 5667777777777776444 56667888888888888888776554332 3344555555444433
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=2.5e-07 Score=82.04 Aligned_cols=91 Identities=26% Similarity=0.245 Sum_probs=48.3
Q ss_pred CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEEC
Q 036375 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL 721 (1009)
Q Consensus 642 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 721 (1009)
..|+..+|++|.+....+..-...+..+.|++++|+++ .+|+.+..++.|+.|+++.|.+. ..|..+..+.++-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 34445555555555333322233345556666666665 34555666666666666666655 34455555555556666
Q ss_pred cCCcccccCchhhh
Q 036375 722 GNNRFSGNIPSLLG 735 (1009)
Q Consensus 722 ~~N~l~~~ip~~l~ 735 (1009)
.+|.+. .||..++
T Consensus 131 ~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 131 PENARA-EIDVDLF 143 (177)
T ss_pred CCCccc-cCcHHHh
Confidence 555554 5554433
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=9.3e-07 Score=78.54 Aligned_cols=94 Identities=24% Similarity=0.409 Sum_probs=48.1
Q ss_pred CCEEEccCccccCCCchh---hcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEE
Q 036375 692 LQSLHLNNNKLTGNLPSS---FQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVL 768 (1009)
Q Consensus 692 L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 768 (1009)
+-.++|++|++. .++.. +.....|+..+|++|.+. .+|..+...++.++.|++++|+++ .+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 334455555443 22222 233334445566666655 455544433455566666666665 455556666666666
Q ss_pred EccCCcCCCCCChhhhhhhhh
Q 036375 769 DLAENNLTGSIPGSVGDLKAM 789 (1009)
Q Consensus 769 ~Ls~N~l~~~~p~~~~~l~~L 789 (1009)
+++.|++. ..|..+..|.++
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred ccccCccc-cchHHHHHHHhH
Confidence 66666665 334444444444
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=5.3e-06 Score=83.52 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=29.9
Q ss_pred CCCcEEeCCCCcCCCCCC-cccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcc
Q 036375 427 KNLTKLNLPGNQLNGTLP-ETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSF 488 (1009)
Q Consensus 427 ~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 488 (1009)
+++..+.+..|.+...-. .....++.+..|+|+.|++..-.....+.++++|..|.++.+++
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 444445555554432211 12334445555556665555433333455556666666655554
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=8.1e-05 Score=81.26 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=54.1
Q ss_pred ccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCC
Q 036375 686 LGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSL 765 (1009)
Q Consensus 686 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 765 (1009)
+..+.+++.|++++|.++ .+|. -..+|++|.++++.-...+|..+ .++|+.|++++|.....+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence 445788999999999887 4562 23469999998855445777654 46899999998833334554 47
Q ss_pred CEEEccCCcC
Q 036375 766 QVLDLAENNL 775 (1009)
Q Consensus 766 ~~L~Ls~N~l 775 (1009)
+.|+++++..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 7777776654
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.65 E-value=4.9e-06 Score=82.64 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=13.8
Q ss_pred hhhhcCCCCcEEEccCCcC
Q 036375 241 NWLVNISTLVYVDLSDCDL 259 (1009)
Q Consensus 241 ~~l~~l~~L~~L~L~~n~~ 259 (1009)
+.+++-+.|++|.+++|.+
T Consensus 114 d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHHhcCCCceeEEeecCCC
Confidence 3556677888888888865
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.65 E-value=4e-06 Score=83.28 Aligned_cols=242 Identities=20% Similarity=0.199 Sum_probs=142.6
Q ss_pred ccCCCccEEEccCCcccCCCCchhhhccC---cccEEEecccccccc----CCCCCCCCCcCeEeccCCCCCCCCCCCCC
Q 036375 521 KTQQGVSFLDFSNASISGPIPNWFWDISS---KLSLLNVSLNQLQGQ----LPNPLNIAPFADVDFRSNLLEGPIPLPIV 593 (1009)
Q Consensus 521 ~~~~~L~~L~ls~n~i~~~~p~~~~~~~~---~L~~L~ls~n~l~~~----~~~~~~~~~l~~l~l~~n~l~~~~~~~~~ 593 (1009)
..+..++.+|+|+|.|......++..... +|+..+++.- ++|. ++..+.. --..-..|+
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~-------------Ll~aLlkcp 92 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVM-------------LLKALLKCP 92 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHH-------------HHHHHhcCC
Confidence 33566778888888887766666655443 3444443322 1111 1110000 000001246
Q ss_pred CccEEEccCCcCCCcCCch---hhcCCCCccEEEccCCcccccCCccc-------------ccCCCCCeEEccCCcCCcc
Q 036375 594 EIELLDLSNNHFSGPIPQN---ISGSMPNLIFLSVSGNRLTGKIPGSI-------------GEMQLLQVIDLSRNSISGS 657 (1009)
Q Consensus 594 ~L~~L~Ls~n~l~~~ip~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~-------------~~l~~L~~L~Ls~N~l~~~ 657 (1009)
.|+..+||.|.|....|+. +...-+.|++|.+++|.+.......+ ..-+.|++.+...|++..-
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng 172 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG 172 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC
Confidence 7777788888777666543 34556778888888887653322222 2346788888888887522
Q ss_pred Cc----CcccCCCCCCEEECCCCcCcccC-----CccccCCCCCCEEEccCccccCC----CchhhcCCCCCCEEECcCC
Q 036375 658 IS----SSIGNCTFLKVLDLSYSSLSGVI-----PASLGQLTRLQSLHLNNNKLTGN----LPSSFQNLTSLETLDLGNN 724 (1009)
Q Consensus 658 ~p----~~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N 724 (1009)
.. ..+..-..|+.+.+..|.|.-.- -..+..+.+|+.|||+.|-++.. +...+...+.|+.|.+.+|
T Consensus 173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 11 12333357888888888775221 11234578889999999888733 2234556677888889888
Q ss_pred cccccCchhhhh-----cCcCCcEEEccCCcccccCCccc-------CCCCCCCEEEccCCcCC
Q 036375 725 RFSGNIPSLLGN-----GFVGLRILSLRSNAFSGEIPSKL-------SNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 725 ~l~~~ip~~l~~-----~l~~L~~L~L~~N~l~~~~p~~l-------~~l~~L~~L~Ls~N~l~ 776 (1009)
-++..-...+.. ..++|..|-..+|...+.+-..+ .+++-|..|.+.+|+|.
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 887554443322 25678888888887765432221 34566667777777765
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.61 E-value=0.00012 Score=70.25 Aligned_cols=112 Identities=23% Similarity=0.235 Sum_probs=78.4
Q ss_pred CCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEE
Q 036375 402 LENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFL 481 (1009)
Q Consensus 402 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 481 (1009)
..+...+||++|.+... ..|..++.|.+|.+.+|+|+..-|.--.-+++|+.|.+.+|.+.....-..+..|++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34667888888887633 3577788888899999988876666555678889999999888765554557788888888
Q ss_pred eCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcc
Q 036375 482 GLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASI 536 (1009)
Q Consensus 482 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i 536 (1009)
.+-+|+...... .--..+..+++|+.||+.+-..
T Consensus 119 tll~Npv~~k~~---------------------YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNPVEHKKN---------------------YRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCchhcccC---------------------ceeEEEEecCcceEeehhhhhH
Confidence 888887642211 1112345667777777766543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=3e-05 Score=56.04 Aligned_cols=35 Identities=43% Similarity=0.642 Sum_probs=14.7
Q ss_pred CCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCC
Q 036375 852 LVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLS 887 (1009)
Q Consensus 852 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 887 (1009)
|++|++++|+|+. +|..+++|++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 4444444444442 2223444444444444444444
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.57 E-value=0.00024 Score=77.63 Aligned_cols=54 Identities=15% Similarity=0.051 Sum_probs=27.8
Q ss_pred CCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCC
Q 036375 617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYS 676 (1009)
Q Consensus 617 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 676 (1009)
+.+++.|++++|.++.. |. + ..+|+.|.++++.--..+|..+ .++|++|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-PV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 46666777776655532 21 1 2346666666543323444333 235666666655
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.52 E-value=0.00019 Score=67.21 Aligned_cols=126 Identities=17% Similarity=0.248 Sum_probs=50.9
Q ss_pred CCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccC
Q 036375 609 IPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQ 688 (1009)
Q Consensus 609 ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 688 (1009)
+++..|..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3444555566666666653 344455555666666666666553 4444445566665666666654 333334445555
Q ss_pred CCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCC
Q 036375 689 LTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGL 741 (1009)
Q Consensus 689 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L 741 (1009)
+++|+.+++..+ +.......|.++ .|+.+.+.. .+. .++...+.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 666666666543 333333445554 566665554 222 3444444334333
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=9.5e-05 Score=53.45 Aligned_cols=36 Identities=50% Similarity=0.795 Sum_probs=14.8
Q ss_pred CCCEEEccCccccCCCchhhcCCCCCCEEECcCCccc
Q 036375 691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS 727 (1009)
Q Consensus 691 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 727 (1009)
+|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=8.5e-05 Score=88.42 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=58.4
Q ss_pred hhhhh-cCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcc-cCCccc
Q 036375 190 WLGIL-KNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYG-RIPIGF 267 (1009)
Q Consensus 190 ~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l 267 (1009)
|+..+ ..+|+|+.|.+++-.+...--.....++++|..||+|+++++.. ..++++++|+.|.+.+-.+.. ..-..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 55555 33566666666554443221111123444444444444444433 334455555555444443332 111234
Q ss_pred CCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhh
Q 036375 268 GELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSI 341 (1009)
Q Consensus 268 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l 341 (1009)
.++++|+.||+|......... +....-+.-..+|+|+.||.++..+.+.+-+.+
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~--------------------ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTK--------------------IIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred hcccCCCeeeccccccccchH--------------------HHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 445555555555432111000 000011122347888888888887776654443
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.26 E-value=0.0001 Score=87.84 Aligned_cols=142 Identities=23% Similarity=0.204 Sum_probs=91.2
Q ss_pred CCccEEEcCCCc-CCCCCCCCCCCCCCCCcEEECCCCCCCC-CchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCCCE
Q 036375 198 PNLTELHLSVCG-LTGSITSITPVNLTSPAVLDLSLNHFNS-LFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQY 275 (1009)
Q Consensus 198 ~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 275 (1009)
.+|++|++++.. +....+......+|+|+.|.+++-.+.. .+-....++++|..||+|+++++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 578888988864 3334444444668888888888866543 3344456788888888888887644 46778888888
Q ss_pred EEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccC------chhhhcccCCCE
Q 036375 276 LSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGI------PSSIARLCYLKE 349 (1009)
Q Consensus 276 L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~------~~~l~~l~~L~~ 349 (1009)
|.+.+-.+... ..-..+.++++|++||+|........ .+.-..+|+|+.
T Consensus 200 L~mrnLe~e~~-------------------------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrf 254 (699)
T KOG3665|consen 200 LSMRNLEFESY-------------------------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRF 254 (699)
T ss_pred HhccCCCCCch-------------------------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccE
Confidence 87765432100 11123556777777777765543221 111234789999
Q ss_pred EEcCCCcCCCCCCcccc
Q 036375 350 FDLSGNNLTGSLPEILQ 366 (1009)
Q Consensus 350 L~l~~n~l~~~~~~~~~ 366 (1009)
||.++..+.+..-+.+.
T Consensus 255 LDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 255 LDCSGTDINEEILEELL 271 (699)
T ss_pred EecCCcchhHHHHHHHH
Confidence 99999988766555443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.20 E-value=0.00065 Score=63.46 Aligned_cols=108 Identities=21% Similarity=0.311 Sum_probs=52.0
Q ss_pred CcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCC
Q 036375 635 PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLT 714 (1009)
Q Consensus 635 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 714 (1009)
..+|.++++|+.+.+.. .+.......|.++++|+.+++..+ +.......|.++++++.+.+.+ .+.......|..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34566677777777764 455555566777767777777664 5545555666666677777754 33323344566666
Q ss_pred CCCEEECcCCcccccCchhhhhcCcCCcEEEccC
Q 036375 715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRS 748 (1009)
Q Consensus 715 ~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~ 748 (1009)
+|+.+++..+ +. .++...+.+. +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 6666666554 33 4444444333 555555544
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00025 Score=71.26 Aligned_cols=112 Identities=19% Similarity=0.138 Sum_probs=73.7
Q ss_pred CCCcCCEEeCCCCCCCCCCCCcccCCCCCCceeecccC--CCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCC
Q 036375 94 SGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEA--GFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLV 171 (1009)
Q Consensus 94 ~l~~L~~LdLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~--~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~ 171 (1009)
.+..|+.|++.+..++. -..+-.+++|++|.+|.| .+.+.++....++++|++|++++|+++. ...+..+..+.
T Consensus 41 ~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhc
Confidence 34445555555555443 123445778888888888 6666666666677888888888887664 56666777777
Q ss_pred CCCeEEcCCccCCCCcchhhhhhcCCCCccEEEcCCCc
Q 036375 172 SLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCG 209 (1009)
Q Consensus 172 ~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~ 209 (1009)
+|..|++.++.......---..+.-+++|++|+-....
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 78888887777666433223455667777777755543
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.06 E-value=0.00069 Score=65.12 Aligned_cols=109 Identities=21% Similarity=0.192 Sum_probs=66.1
Q ss_pred CcCCEEeCCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCCCCCe
Q 036375 96 SLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKH 175 (1009)
Q Consensus 96 ~~L~~LdLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~ 175 (1009)
.....+||++|.+.. ...+..++.|.+|.|++|.++..-|.--..+++|++|.+.+|.+... +++..+..|++|+.
T Consensus 42 d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-GDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-hhcchhccCCccce
Confidence 346678888888765 23456778888888888888855554444566788888888865432 34455555666666
Q ss_pred EEcCCccCCCCcchhhhhhcCCCCccEEEcCCC
Q 036375 176 LAMNRVDLSLVGSEWLGILKNLPNLTELHLSVC 208 (1009)
Q Consensus 176 L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n 208 (1009)
|.+-+|+++....=-.-.+..+|+|+.||..+.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 666666554422101112344555555555443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.61 E-value=0.0004 Score=81.74 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=9.2
Q ss_pred hcCCCCCCEEeCcCCc
Q 036375 399 LSQLENLVELTLSYNL 414 (1009)
Q Consensus 399 l~~l~~L~~L~Ls~n~ 414 (1009)
...+++++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 4455666666665555
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.60 E-value=0.00035 Score=82.21 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=27.8
Q ss_pred CCCCcEEEccCCc-CcccCCcccC-CCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEccccc
Q 036375 246 ISTLVYVDLSDCD-LYGRIPIGFG-ELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNK 308 (1009)
Q Consensus 246 l~~L~~L~L~~n~-~~~~~p~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~ 308 (1009)
+++|+.|+++.+. +++..-..+. .+++|++|.+.+|.......+......++.|++|+++.|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4455555555554 3222212222 2455555554444322333333344445555555555554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.00019 Score=71.93 Aligned_cols=98 Identities=31% Similarity=0.373 Sum_probs=48.8
Q ss_pred CccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCC-ccccCCCCCCEEEc
Q 036375 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIP-ASLGQLTRLQSLHL 697 (1009)
Q Consensus 619 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L 697 (1009)
+.+.|+..+|.++++. ...+++.|++|.|+-|+|+..- .+..|++|++|+|..|.|..... ..+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3444444444444321 1223555566666666655432 25556666666666666553211 23445566666666
Q ss_pred cCccccCCCchh-----hcCCCCCCEEE
Q 036375 698 NNNKLTGNLPSS-----FQNLTSLETLD 720 (1009)
Q Consensus 698 ~~N~l~~~~p~~-----~~~l~~L~~L~ 720 (1009)
..|.-.|..+.. +.-+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 666655444332 34455555543
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0036 Score=63.11 Aligned_cols=82 Identities=24% Similarity=0.326 Sum_probs=37.3
Q ss_pred CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCC--cCcccCCccccCCCCCCEEEccCccccCCCchh---hcCCCCC
Q 036375 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYS--SLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSS---FQNLTSL 716 (1009)
Q Consensus 642 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L 716 (1009)
..|+.|.+.+..++.. ..+-.+++|+.|.++.| ++.+..+.....+++|++|++++|++.- +.. +..+.+|
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 3444444444444322 22334455555555555 4444433333444555566665555541 111 2333444
Q ss_pred CEEECcCCccc
Q 036375 717 ETLDLGNNRFS 727 (1009)
Q Consensus 717 ~~L~L~~N~l~ 727 (1009)
..|++.+|.-+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 45555555433
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.00081 Score=67.60 Aligned_cols=101 Identities=26% Similarity=0.269 Sum_probs=73.5
Q ss_pred CCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCc-hhhcCCCCCCEE
Q 036375 641 MQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP-SSFQNLTSLETL 719 (1009)
Q Consensus 641 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L 719 (1009)
+.+.+.|+..++.++++ .....++.|+.|.|+-|+|+.. +.|..|++|++|+|..|.|..... .-+.++++|++|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45677888888888755 3456788999999999999866 347788999999999998874321 235778888888
Q ss_pred ECcCCcccccCchhh----hhcCcCCcEEE
Q 036375 720 DLGNNRFSGNIPSLL----GNGFVGLRILS 745 (1009)
Q Consensus 720 ~L~~N~l~~~ip~~l----~~~l~~L~~L~ 745 (1009)
.|..|+-.|.-+... ...+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888777665432 12366666664
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.13 E-value=0.0065 Score=36.41 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=5.6
Q ss_pred CCeEEccCCccc
Q 036375 852 LVVLNLSRNHIG 863 (1009)
Q Consensus 852 L~~L~Ls~N~l~ 863 (1009)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.04 E-value=0.01 Score=35.56 Aligned_cols=20 Identities=65% Similarity=0.866 Sum_probs=11.0
Q ss_pred CCEEeCCCCcCCCCCcccccC
Q 036375 876 LASLDLSSNNLSGGIPSSLSS 896 (1009)
Q Consensus 876 L~~L~Ls~N~l~~~ip~~l~~ 896 (1009)
|++|||++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 555666666665 45555443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.68 E-value=0.0017 Score=74.05 Aligned_cols=109 Identities=26% Similarity=0.271 Sum_probs=55.6
Q ss_pred CCCEEECCCCcCcccCCc----cccCCCCCCEEEccCccccCCCchh----hcCC-CCCCEEECcCCccccc----Cchh
Q 036375 667 FLKVLDLSYSSLSGVIPA----SLGQLTRLQSLHLNNNKLTGNLPSS----FQNL-TSLETLDLGNNRFSGN----IPSL 733 (1009)
Q Consensus 667 ~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l-~~L~~L~L~~N~l~~~----ip~~ 733 (1009)
.+..|.|.+|.+...... .+...+.|+.|++++|.+.+.-... +... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 467777777777654332 3444567777777777766322111 2222 3455566666665532 2233
Q ss_pred hhhcCcCCcEEEccCCcccc----cCCcccC----CCCCCCEEEccCCcCC
Q 036375 734 LGNGFVGLRILSLRSNAFSG----EIPSKLS----NLSSLQVLDLAENNLT 776 (1009)
Q Consensus 734 l~~~l~~L~~L~L~~N~l~~----~~p~~l~----~l~~L~~L~Ls~N~l~ 776 (1009)
+.. ...++.++++.|.+.. .++..+. ...++++|.+++|.++
T Consensus 168 L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 168 LEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred Hhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 333 4555666666665531 1122222 3455556666666554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.73 E-value=0.0021 Score=73.40 Aligned_cols=183 Identities=26% Similarity=0.321 Sum_probs=103.3
Q ss_pred ccEEEccCCcCCCcCCchh---hcCCCCccEEEccCCcccccCCcc----cccC-CCCCeEEccCCcCCcc----CcCcc
Q 036375 595 IELLDLSNNHFSGPIPQNI---SGSMPNLIFLSVSGNRLTGKIPGS----IGEM-QLLQVIDLSRNSISGS----ISSSI 662 (1009)
Q Consensus 595 L~~L~Ls~n~l~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l-~~L~~L~Ls~N~l~~~----~p~~l 662 (1009)
+..+.+.+|.+.......+ ....+.|+.|++++|.+.+..... +... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4555666665553322221 234456666777777666322211 1122 3456667776666533 33445
Q ss_pred cCCCCCCEEECCCCcCccc----CCccc----cCCCCCCEEEccCccccCCC----chhhcCCCC-CCEEECcCCccccc
Q 036375 663 GNCTFLKVLDLSYSSLSGV----IPASL----GQLTRLQSLHLNNNKLTGNL----PSSFQNLTS-LETLDLGNNRFSGN 729 (1009)
Q Consensus 663 ~~l~~L~~L~Ls~N~l~~~----~p~~~----~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~-L~~L~L~~N~l~~~ 729 (1009)
.....++.++++.|.+... ++..+ ....++++|++.+|.++... ...+...+. +..+++.+|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 5567777777777776311 22222 24567888888888776221 123444455 66788888877643
Q ss_pred Cchhhhh---cC-cCCcEEEccCCcccccC----CcccCCCCCCCEEEccCCcCCC
Q 036375 730 IPSLLGN---GF-VGLRILSLRSNAFSGEI----PSKLSNLSSLQVLDLAENNLTG 777 (1009)
Q Consensus 730 ip~~l~~---~l-~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~ 777 (1009)
.-..+.. .+ ..++.++++.|.++..- ...+..++.++.+.++.|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2222211 12 45678888888887543 3345567788888888888763
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.16 E-value=0.048 Score=52.98 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=37.3
Q ss_pred CcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEccccc-ccccCCccccCCCCCCEEE
Q 036375 249 LVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNK-LHGKLPSSVANMTSLTNFD 327 (1009)
Q Consensus 249 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~ 327 (1009)
++.+|-+++.+...--+.+..++.++.|.+.+|.....-++...-+-.++|+.|++++|. ++...-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 444444444444333334444455555555544332222222222233444555554442 4433344555666666666
Q ss_pred ccC
Q 036375 328 LFD 330 (1009)
Q Consensus 328 l~~ 330 (1009)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 654
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.86 E-value=0.37 Score=26.72 Aligned_cols=9 Identities=78% Similarity=1.047 Sum_probs=2.9
Q ss_pred CEEECcCCc
Q 036375 717 ETLDLGNNR 725 (1009)
Q Consensus 717 ~~L~L~~N~ 725 (1009)
++|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.72 E-value=0.56 Score=29.31 Aligned_cols=16 Identities=50% Similarity=0.536 Sum_probs=9.0
Q ss_pred CCCCEEeCCCCcCCCC
Q 036375 874 HQLASLDLSSNNLSGG 889 (1009)
Q Consensus 874 ~~L~~L~Ls~N~l~~~ 889 (1009)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4555666666665543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.72 E-value=0.56 Score=29.31 Aligned_cols=16 Identities=50% Similarity=0.536 Sum_probs=9.0
Q ss_pred CCCCEEeCCCCcCCCC
Q 036375 874 HQLASLDLSSNNLSGG 889 (1009)
Q Consensus 874 ~~L~~L~Ls~N~l~~~ 889 (1009)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4555666666665543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.43 E-value=0.029 Score=55.26 Aligned_cols=80 Identities=24% Similarity=0.280 Sum_probs=69.5
Q ss_pred eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 908 (1009)
+.||++.|++-. .-..|.-++.|..||+|.|++. ..|..++++..+..+++..|..+ ..|.++...+.++++++-.|
T Consensus 45 tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 45 TVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccC
Confidence 789999998863 3455777888999999999998 66888999999999999999998 67999999999999999999
Q ss_pred cce
Q 036375 909 QLS 911 (1009)
Q Consensus 909 ~l~ 911 (1009)
.+.
T Consensus 122 ~~~ 124 (326)
T KOG0473|consen 122 EFF 124 (326)
T ss_pred cch
Confidence 874
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.89 E-value=0.04 Score=54.37 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=65.8
Q ss_pred CcEEEEecCCCCC--CCCCCCCCCcCCEEeCCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeC
Q 036375 75 GAIVAINLGNPYH--VVNSDSSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDV 152 (1009)
Q Consensus 75 ~~v~~l~l~~~~g--i~~~l~~l~~L~~LdLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~L 152 (1009)
.||+.||++...- +-..++.++.+..||++.|.+.- +|..++....++.+++..|..+ ..|.+.+++++++++++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 5789999887652 55667778889999999988876 7888888899999999888876 78999999999999998
Q ss_pred CCcc
Q 036375 153 SAEL 156 (1009)
Q Consensus 153 s~~~ 156 (1009)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 8874
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.89 E-value=0.48 Score=29.61 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=17.1
Q ss_pred cCCCCeEEccCCcccccCCCCcc
Q 036375 849 LVGLVVLNLSRNHIGGQIPENIS 871 (1009)
Q Consensus 849 l~~L~~L~Ls~N~l~~~~p~~l~ 871 (1009)
+++|+.|+|++|+|+...+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788899999998866555554
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.89 E-value=0.48 Score=29.61 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=17.1
Q ss_pred cCCCCeEEccCCcccccCCCCcc
Q 036375 849 LVGLVVLNLSRNHIGGQIPENIS 871 (1009)
Q Consensus 849 l~~L~~L~Ls~N~l~~~~p~~l~ 871 (1009)
+++|+.|+|++|+|+...+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788899999998866555554
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.33 E-value=0.4 Score=46.77 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=21.4
Q ss_pred CCCEEEccCCcccccCchhhhcccCCCEEEcCCCc
Q 036375 322 SLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNN 356 (1009)
Q Consensus 322 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 356 (1009)
.++.+|-++..+..+--+.+.+++.++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 35666666666665555556666666666666654
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.82 E-value=0.57 Score=28.62 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=8.6
Q ss_pred CCCCEEEccCCcCCCC
Q 036375 763 SSLQVLDLAENNLTGS 778 (1009)
Q Consensus 763 ~~L~~L~Ls~N~l~~~ 778 (1009)
++|++|+|++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4566666666666543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.68 E-value=3.9 Score=25.65 Aligned_cols=15 Identities=47% Similarity=0.693 Sum_probs=9.8
Q ss_pred CCCCCEEeCCCCcCC
Q 036375 873 LHQLASLDLSSNNLS 887 (1009)
Q Consensus 873 l~~L~~L~Ls~N~l~ 887 (1009)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356677777777665
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=55.30 E-value=30 Score=38.75 Aligned_cols=66 Identities=30% Similarity=0.229 Sum_probs=33.4
Q ss_pred ccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhh---cCCCCCCEEeCcCCcccccCC
Q 036375 344 LCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWL---SQLENLVELTLSYNLLQGPIP 420 (1009)
Q Consensus 344 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~~~p 420 (1009)
-+.+++++++.|.+....|..+... .++ +.++.|..+...-..+ +.-..+.+++++.|.....+|
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p--------~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip 231 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQP--------GNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIP 231 (553)
T ss_pred cchhhhhccCCCcccccCCccccCC--------CCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccch
Confidence 3567778888887776666554321 111 4555555443211100 011245666666666555555
Q ss_pred C
Q 036375 421 A 421 (1009)
Q Consensus 421 ~ 421 (1009)
.
T Consensus 232 ~ 232 (553)
T KOG4242|consen 232 R 232 (553)
T ss_pred h
Confidence 4
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=54.77 E-value=9.8 Score=24.25 Aligned_cols=14 Identities=50% Similarity=0.655 Sum_probs=8.4
Q ss_pred CCCCEEeCCCCcCC
Q 036375 874 HQLASLDLSSNNLS 887 (1009)
Q Consensus 874 ~~L~~L~Ls~N~l~ 887 (1009)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=50.51 E-value=77 Score=35.68 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=11.1
Q ss_pred CCCccEEEccCCcccCCCCc
Q 036375 523 QQGVSFLDFSNASISGPIPN 542 (1009)
Q Consensus 523 ~~~L~~L~ls~n~i~~~~p~ 542 (1009)
.+.++++|++.|.+....|-
T Consensus 164 npr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred cchhhhhccCCCcccccCCc
Confidence 34455666666666555443
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=45.39 E-value=14 Score=23.12 Aligned_cols=17 Identities=35% Similarity=0.780 Sum_probs=9.3
Q ss_pred CCCEEECcCCcccccCch
Q 036375 715 SLETLDLGNNRFSGNIPS 732 (1009)
Q Consensus 715 ~L~~L~L~~N~l~~~ip~ 732 (1009)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4555666666655 4443
No 91
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=43.21 E-value=14 Score=30.24 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=6.5
Q ss_pred CCCCCCCCCc
Q 036375 56 SWKGSNCCQW 65 (1009)
Q Consensus 56 ~W~~~~~c~w 65 (1009)
.|.+.+||.|
T Consensus 58 ~~~~~~CC~~ 67 (75)
T PF02950_consen 58 CKRNSECCSG 67 (75)
T ss_dssp BTTTTCBSSS
T ss_pred CCCCCCCCCC
Confidence 3445678887
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.62 E-value=20 Score=40.86 Aligned_cols=32 Identities=28% Similarity=0.130 Sum_probs=14.9
Q ss_pred eEEEccCCccCCCC--CccccCcCCCCeEEccCC
Q 036375 829 HFIDLSGNNLHGDF--PTQLTKLVGLVVLNLSRN 860 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N 860 (1009)
..+.|++|++-..- ..--..-+.|+.|+||+|
T Consensus 221 ~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 221 LSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred eeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 45566666654321 111112245556666666
No 93
>PRK00523 hypothetical protein; Provisional
Probab=30.61 E-value=53 Score=26.39 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=10.8
Q ss_pred HHHHHhhhhhcccchhhHHHH
Q 036375 979 GIIVPMFIFSIKKPCSDAYFK 999 (1009)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~ 999 (1009)
.++.+++.+++.|++...|++
T Consensus 15 li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 15 LIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555655555554
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.05 E-value=32 Score=39.40 Aligned_cols=12 Identities=42% Similarity=0.479 Sum_probs=6.8
Q ss_pred CCEEECcCCccc
Q 036375 716 LETLDLGNNRFS 727 (1009)
Q Consensus 716 L~~L~L~~N~l~ 727 (1009)
|++|-+.+|++.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 455555566554
No 95
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=28.72 E-value=30 Score=37.51 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=14.4
Q ss_pred hhhhhhHHHHHHHHHHhhhhhcccchhhH
Q 036375 968 FYFSLGLGFAAGIIVPMFIFSIKKPCSDA 996 (1009)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 996 (1009)
+-+++++++++.++++++++++.||++++
T Consensus 273 vPIaVG~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 273 VPIAVGAALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence 33444444444445555555665555444
No 96
>PRK01844 hypothetical protein; Provisional
Probab=26.11 E-value=70 Score=25.72 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=7.8
Q ss_pred HhhhhhcccchhhHHH
Q 036375 983 PMFIFSIKKPCSDAYF 998 (1009)
Q Consensus 983 ~~~~~~~~~~~~~~~~ 998 (1009)
+++.+++.|++-..|+
T Consensus 18 ~~~Gff~ark~~~k~l 33 (72)
T PRK01844 18 VALGFFIARKYMMNYL 33 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555544
No 97
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.44 E-value=45 Score=30.22 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=5.1
Q ss_pred hhhHHHHHHHHH
Q 036375 971 SLGLGFAAGIIV 982 (1009)
Q Consensus 971 ~~~~~~~~~~~~ 982 (1009)
++++|+++|+++
T Consensus 68 ~Ii~gv~aGvIg 79 (122)
T PF01102_consen 68 GIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhHHHHHHHHH
Confidence 334444444433
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.33 E-value=43 Score=46.29 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=23.7
Q ss_pred EccCCcccccCCCCccCCCCCCEEeCCCCcCC
Q 036375 856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLS 887 (1009)
Q Consensus 856 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 887 (1009)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57777777766677777777777777777765
No 99
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=22.75 E-value=56 Score=20.19 Aligned_cols=12 Identities=67% Similarity=1.013 Sum_probs=7.0
Q ss_pred CCccEEEcCCCc
Q 036375 198 PNLTELHLSVCG 209 (1009)
Q Consensus 198 ~~L~~L~L~~n~ 209 (1009)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666653
No 100
>PF15102 TMEM154: TMEM154 protein family
Probab=22.51 E-value=43 Score=31.12 Aligned_cols=18 Identities=6% Similarity=-0.079 Sum_probs=8.8
Q ss_pred HHHHHHhhhhhcccchhh
Q 036375 978 AGIIVPMFIFSIKKPCSD 995 (1009)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~ 995 (1009)
+.+++++++++++||||.
T Consensus 70 lLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHheeEEeeccc
Confidence 333444444555555554
No 101
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=21.29 E-value=85 Score=26.56 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=20.8
Q ss_pred ccchhhhhhhHHHHHHHHHHhhhhhcccchh
Q 036375 964 IDKWFYFSLGLGFAAGIIVPMFIFSIKKPCS 994 (1009)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 994 (1009)
...|.+++.+.|+++.++++.++++++.+|+
T Consensus 39 ~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 39 VAYWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred HhhhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 3456677777777776666666667766666
No 102
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=21.27 E-value=1e+02 Score=25.55 Aligned_cols=10 Identities=10% Similarity=0.378 Sum_probs=3.5
Q ss_pred hHHHHhHHHH
Q 036375 995 DAYFKFVDKI 1004 (1009)
Q Consensus 995 ~~~~~~~~~~ 1004 (1009)
++..+.++|+
T Consensus 37 rkId~li~RI 46 (81)
T PF00558_consen 37 RKIDRLIERI 46 (81)
T ss_dssp --CHHHHHHH
T ss_pred HhHHHHHHHH
Confidence 3334444444
Done!