Query 036375
Match_columns 1009
No_of_seqs 903 out of 5477
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 20:48:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-91 4E-96 866.6 49.1 734 29-947 6-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.2E-71 7.4E-76 685.6 46.2 650 63-932 31-715 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5.6E-58 1.9E-62 561.6 53.5 543 194-916 69-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-57 7.5E-62 556.4 50.3 578 198-938 25-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 5.2E-53 1.8E-57 510.5 46.7 535 302-916 17-565 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-53 6.5E-58 531.0 43.7 578 302-951 9-596 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-52 1.5E-56 502.6 40.0 540 226-916 14-563 (606)
8 3t6q_A CD180 antigen; protein- 100.0 8.6E-52 2.9E-56 499.9 40.9 531 325-938 16-564 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-51 8.3E-56 495.9 39.1 536 300-939 14-563 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 1E-50 3.5E-55 506.4 40.6 537 324-939 7-565 (844)
11 4eco_A Uncharacterized protein 100.0 2.5E-51 8.6E-56 494.5 26.8 505 32-777 27-601 (636)
12 4ecn_A Leucine-rich repeat pro 100.0 3.7E-49 1.3E-53 481.5 32.8 190 233-464 435-632 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 1.5E-46 5E-51 451.0 37.9 516 302-918 12-538 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 6.1E-46 2.1E-50 445.7 36.7 515 227-892 11-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-45 3.6E-50 441.2 30.4 485 301-916 9-515 (549)
16 4eco_A Uncharacterized protein 100.0 1.7E-46 5.9E-51 452.4 22.4 451 297-913 81-602 (636)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-44 6.2E-49 430.5 30.3 496 274-891 8-514 (549)
18 4g8a_A TOLL-like receptor 4; l 100.0 6E-42 2E-46 417.0 40.8 523 224-915 53-584 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-43 4.3E-48 419.9 25.2 463 324-915 3-485 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 3.4E-43 1.2E-47 428.9 28.9 459 297-913 323-842 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 6.9E-44 2.4E-48 422.1 21.1 455 348-938 3-485 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-41 7.3E-46 412.2 40.2 527 312-938 45-584 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.6E-41 2.6E-45 399.2 26.9 458 322-916 32-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-40 5E-45 396.8 22.8 461 343-938 29-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 2.7E-38 9.4E-43 367.6 30.1 386 382-917 13-414 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 1.9E-38 6.4E-43 365.1 23.1 392 377-917 9-417 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 1.3E-37 4.6E-42 357.9 29.8 216 619-917 216-435 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 2.4E-36 8.1E-41 351.3 34.0 382 300-780 13-412 (455)
29 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-37 3.6E-42 341.7 18.2 289 31-356 2-302 (313)
30 3bz5_A Internalin-J, INLJ; leu 100.0 4.7E-35 1.6E-39 337.1 27.6 415 292-848 37-452 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 5E-35 1.7E-39 336.8 27.0 354 377-917 40-393 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 4.3E-35 1.5E-39 342.5 26.4 346 528-938 15-360 (477)
33 1o6v_A Internalin A; bacterial 100.0 2.7E-34 9.2E-39 334.0 32.5 214 641-912 176-389 (466)
34 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-35 5.9E-40 324.2 18.2 258 643-943 51-312 (313)
35 1o6v_A Internalin A; bacterial 100.0 1.7E-33 5.8E-38 327.2 34.5 195 638-888 195-389 (466)
36 2id5_A Lingo-1, leucine rich r 100.0 9.6E-34 3.3E-38 331.1 26.7 304 593-937 32-336 (477)
37 3oja_B Anopheles plasmodium-re 100.0 3E-32 1E-36 326.5 25.8 335 523-938 50-384 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 4.8E-32 1.6E-36 307.7 25.5 335 523-938 44-378 (390)
39 3o6n_A APL1; leucine-rich repe 100.0 4.1E-30 1.4E-34 291.8 29.8 310 320-728 44-353 (390)
40 4fmz_A Internalin; leucine ric 100.0 4.3E-30 1.5E-34 286.9 29.0 259 593-911 88-346 (347)
41 1xku_A Decorin; proteoglycan, 100.0 4.9E-30 1.7E-34 284.0 29.0 269 593-909 52-330 (330)
42 2ft3_A Biglycan; proteoglycan, 100.0 4.7E-30 1.6E-34 284.2 25.8 268 593-909 54-331 (332)
43 3oja_B Anopheles plasmodium-re 100.0 1.2E-29 4.1E-34 303.9 29.9 311 320-778 50-360 (597)
44 4fcg_A Uncharacterized protein 100.0 1.6E-31 5.5E-36 294.3 12.0 282 25-356 17-312 (328)
45 4fmz_A Internalin; leucine ric 100.0 3.7E-29 1.3E-33 279.3 31.1 306 93-464 41-346 (347)
46 1xku_A Decorin; proteoglycan, 100.0 7.7E-29 2.6E-33 274.4 27.9 268 593-911 31-306 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 8.8E-33 3E-37 321.8 -5.7 183 594-776 143-354 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 5.1E-32 1.7E-36 315.4 -0.2 284 595-913 87-413 (461)
49 2ft3_A Biglycan; proteoglycan, 100.0 7.8E-29 2.7E-33 274.5 22.6 267 593-911 33-307 (332)
50 2z80_A TOLL-like receptor 2, v 100.0 5.7E-29 2E-33 278.1 17.1 279 593-916 31-319 (353)
51 3ogk_B Coronatine-insensitive 100.0 4.8E-31 1.6E-35 317.6 -4.9 452 62-558 41-547 (592)
52 2z66_A Variable lymphocyte rec 100.0 4E-28 1.4E-32 265.6 18.1 249 596-913 10-263 (306)
53 4fcg_A Uncharacterized protein 100.0 6.4E-28 2.2E-32 265.5 19.5 224 643-910 82-313 (328)
54 2z66_A Variable lymphocyte rec 100.0 1.1E-27 3.8E-32 262.0 19.8 249 645-937 10-264 (306)
55 3ogk_B Coronatine-insensitive 99.9 3.3E-29 1.1E-33 301.5 5.9 154 319-484 162-326 (592)
56 2z80_A TOLL-like receptor 2, v 99.9 5.4E-28 1.8E-32 270.2 15.1 261 593-891 52-318 (353)
57 3zyi_A Leucine-rich repeat-con 99.9 1.5E-26 5.1E-31 267.6 25.2 249 595-912 56-304 (452)
58 3zyi_A Leucine-rich repeat-con 99.9 1.1E-26 3.7E-31 268.8 23.7 210 574-787 56-266 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 1.1E-26 3.7E-31 267.7 23.3 249 595-912 45-293 (440)
60 3zyj_A Leucine-rich repeat-con 99.9 1.9E-26 6.5E-31 265.7 24.6 248 645-937 46-295 (440)
61 1ozn_A Reticulon 4 receptor; N 99.9 7E-27 2.4E-31 252.7 17.8 229 645-916 14-243 (285)
62 1ozn_A Reticulon 4 receptor; N 99.9 4.8E-27 1.6E-31 254.0 16.4 252 596-916 14-266 (285)
63 1wwl_A Monocyte differentiatio 99.9 1.1E-28 3.9E-33 270.1 3.4 204 664-913 93-311 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 6E-28 2E-32 265.1 4.8 267 595-916 12-281 (317)
65 1wwl_A Monocyte differentiatio 99.9 9.2E-28 3.1E-32 262.9 5.4 247 593-889 43-311 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.9 8.6E-25 3E-29 258.5 25.3 241 594-916 62-302 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-26 6.4E-31 253.1 10.3 243 619-915 11-255 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.9 3.3E-24 1.1E-28 253.5 28.9 269 549-898 40-308 (622)
69 3oja_A Leucine-rich immune mol 99.9 7.8E-26 2.7E-30 262.7 14.0 220 642-915 34-255 (487)
70 3oja_A Leucine-rich immune mol 99.9 4.4E-26 1.5E-30 264.8 9.5 236 617-906 33-270 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 2.2E-24 7.7E-29 231.8 21.4 209 667-916 29-242 (276)
72 2p1m_B Transport inhibitor res 99.9 5.2E-27 1.8E-31 282.6 -2.5 248 192-461 60-324 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 1E-23 3.6E-28 226.6 20.9 212 643-891 29-241 (276)
74 2p1m_B Transport inhibitor res 99.9 1.8E-26 6E-31 277.9 -3.1 135 641-776 371-519 (594)
75 2o6q_A Variable lymphocyte rec 99.9 4.8E-23 1.7E-27 220.3 22.5 185 691-915 38-222 (270)
76 3rfs_A Internalin B, repeat mo 99.9 1.4E-23 4.9E-28 224.6 14.9 205 662-917 37-241 (272)
77 3goz_A Leucine-rich repeat-con 99.9 1.8E-24 6E-29 242.2 6.7 180 597-777 2-210 (362)
78 1p9a_G Platelet glycoprotein I 99.9 1.3E-22 4.3E-27 218.8 20.4 204 663-913 7-210 (290)
79 3rfs_A Internalin B, repeat mo 99.9 1.7E-23 5.6E-28 224.1 13.3 226 620-898 21-246 (272)
80 2o6q_A Variable lymphocyte rec 99.9 3E-22 1E-26 214.1 22.6 204 644-890 18-221 (270)
81 2ca6_A RAN GTPase-activating p 99.9 1.4E-24 4.9E-29 245.6 1.7 243 634-915 24-320 (386)
82 3goz_A Leucine-rich repeat-con 99.9 7E-24 2.4E-28 237.3 6.7 257 622-913 2-299 (362)
83 1p9a_G Platelet glycoprotein I 99.9 8.3E-22 2.8E-26 212.4 20.3 204 638-888 6-209 (290)
84 2ast_B S-phase kinase-associat 99.9 3.1E-23 1.1E-27 230.2 7.6 249 620-916 49-311 (336)
85 4glp_A Monocyte differentiatio 99.9 1.4E-22 4.8E-27 221.6 12.0 224 619-912 65-308 (310)
86 3m19_A Variable lymphocyte rec 99.9 7.7E-22 2.6E-26 208.5 15.8 212 667-946 15-232 (251)
87 4glp_A Monocyte differentiatio 99.9 1E-22 3.6E-27 222.6 9.1 183 593-776 64-264 (310)
88 2ast_B S-phase kinase-associat 99.9 8.1E-23 2.8E-27 226.8 8.0 254 594-896 48-315 (336)
89 2xwt_C Thyrotropin receptor; s 99.9 6.9E-22 2.4E-26 207.3 13.7 196 667-908 32-236 (239)
90 2ca6_A RAN GTPase-activating p 99.9 3.2E-23 1.1E-27 234.5 3.6 238 614-891 28-320 (386)
91 1h6u_A Internalin H; cell adhe 99.9 5.5E-21 1.9E-25 208.2 16.8 147 617-776 40-186 (308)
92 2xwt_C Thyrotropin receptor; s 99.9 4.6E-21 1.6E-25 201.0 15.5 196 643-884 32-236 (239)
93 1h6u_A Internalin H; cell adhe 99.9 6.7E-21 2.3E-25 207.6 17.2 194 639-912 38-231 (308)
94 3m19_A Variable lymphocyte rec 99.8 2.4E-20 8.3E-25 196.9 19.3 181 642-889 14-194 (251)
95 4ay9_X Follicle-stimulating ho 99.8 4.7E-20 1.6E-24 205.1 15.3 172 595-772 11-186 (350)
96 3cvr_A Invasion plasmid antige 99.8 7.7E-20 2.6E-24 213.4 14.9 45 853-898 210-254 (571)
97 3cvr_A Invasion plasmid antige 99.8 1.4E-19 4.7E-24 211.3 16.8 162 690-916 80-248 (571)
98 4ay9_X Follicle-stimulating ho 99.8 2.1E-19 7E-24 199.9 17.1 180 593-776 30-215 (350)
99 2o6s_A Variable lymphocyte rec 99.8 2.8E-19 9.5E-24 182.9 16.2 161 593-762 28-188 (208)
100 2o6s_A Variable lymphocyte rec 99.8 3E-19 1E-23 182.7 16.0 109 667-776 29-137 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 7.8E-20 2.7E-24 188.3 11.1 157 717-916 14-171 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 2.6E-18 8.7E-23 176.9 15.5 155 717-914 14-168 (220)
103 3e6j_A Variable lymphocyte rec 99.8 8.1E-18 2.8E-22 174.5 15.8 156 716-915 21-176 (229)
104 1h6t_A Internalin B; cell adhe 99.8 7.8E-18 2.7E-22 181.5 16.1 187 646-912 28-214 (291)
105 1h6t_A Internalin B; cell adhe 99.7 4.4E-18 1.5E-22 183.5 12.6 146 620-778 26-171 (291)
106 1m9s_A Internalin B; cell inva 99.7 1.1E-17 3.6E-22 197.8 16.4 130 640-780 41-170 (605)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 2.2E-17 7.5E-22 170.0 16.2 138 594-731 33-170 (220)
108 2xot_A Amphoterin-induced prot 99.7 5.7E-18 1.9E-22 189.0 12.6 177 669-912 21-203 (361)
109 2xot_A Amphoterin-induced prot 99.7 1.3E-17 4.4E-22 186.1 13.8 179 594-777 19-203 (361)
110 1m9s_A Internalin B; cell inva 99.7 1.1E-17 3.8E-22 197.6 13.8 190 644-889 23-212 (605)
111 1w8a_A SLIT protein; signaling 99.7 7.6E-18 2.6E-22 169.4 9.4 133 742-916 11-144 (192)
112 1dce_A Protein (RAB geranylger 99.7 1.5E-19 5.2E-24 212.4 -4.2 203 640-916 347-551 (567)
113 2v9t_B SLIT homolog 2 protein 99.7 7.6E-17 2.6E-21 165.9 15.7 133 644-777 34-166 (220)
114 3e6j_A Variable lymphocyte rec 99.7 2.3E-16 7.8E-21 163.5 17.6 137 642-780 40-176 (229)
115 4b8c_D Glucose-repressible alc 99.7 9.1E-18 3.1E-22 203.8 8.0 224 593-887 173-404 (727)
116 1dce_A Protein (RAB geranylger 99.7 1.1E-18 3.9E-23 204.9 -1.0 196 687-932 346-544 (567)
117 4ezg_A Putative uncharacterize 99.7 5E-17 1.7E-21 164.3 11.2 79 829-911 115-194 (197)
118 4b8c_D Glucose-repressible alc 99.7 7.1E-18 2.4E-22 204.7 5.6 227 618-915 173-408 (727)
119 1xeu_A Internalin C; cellular 99.7 4E-17 1.4E-21 173.0 9.3 168 691-913 20-187 (263)
120 1xeu_A Internalin C; cellular 99.7 1.5E-17 5.2E-22 176.2 6.0 123 643-777 20-142 (263)
121 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.7E-21 160.9 11.3 132 717-891 11-143 (192)
122 4ezg_A Putative uncharacterize 99.7 2.5E-16 8.5E-21 159.2 13.2 154 616-777 42-195 (197)
123 3sb4_A Hypothetical leucine ri 99.6 4.8E-16 1.6E-20 171.1 10.5 261 592-904 48-327 (329)
124 3sb4_A Hypothetical leucine ri 99.6 5.7E-16 2E-20 170.5 10.2 285 523-881 24-328 (329)
125 2wfh_A SLIT homolog 2 protein 99.6 4.1E-15 1.4E-19 149.3 14.5 131 742-915 13-143 (193)
126 2o6r_A Variable lymphocyte rec 99.6 5.1E-15 1.7E-19 146.7 13.1 132 742-915 10-141 (177)
127 4fdw_A Leucine rich hypothetic 99.6 3.9E-14 1.3E-18 158.9 21.0 263 594-910 114-382 (401)
128 2je0_A Acidic leucine-rich nuc 99.6 1.5E-15 5E-20 145.9 7.7 129 738-907 16-149 (149)
129 2ell_A Acidic leucine-rich nuc 99.6 2E-15 7E-20 148.2 8.8 73 714-789 24-97 (168)
130 2ell_A Acidic leucine-rich nuc 99.6 5.5E-15 1.9E-19 145.1 11.3 134 738-912 23-161 (168)
131 2wfh_A SLIT homolog 2 protein 99.6 1.6E-14 5.6E-19 144.8 12.5 129 717-889 13-141 (193)
132 2o6r_A Variable lymphocyte rec 99.5 2.4E-14 8.3E-19 141.8 13.3 133 716-891 9-141 (177)
133 2je0_A Acidic leucine-rich nuc 99.5 1.4E-14 4.8E-19 139.0 10.0 108 618-727 17-126 (149)
134 1ds9_A Outer arm dynein; leuci 99.5 6.4E-16 2.2E-20 156.3 -3.6 127 738-910 47-184 (198)
135 4fdw_A Leucine rich hypothetic 99.5 5.6E-13 1.9E-17 149.5 18.9 242 594-887 136-383 (401)
136 1ds9_A Outer arm dynein; leuci 99.5 2.1E-15 7E-20 152.6 -2.4 153 689-888 17-186 (198)
137 4fs7_A Uncharacterized protein 99.5 2.5E-12 8.7E-17 145.1 22.6 157 312-486 62-218 (394)
138 4fs7_A Uncharacterized protein 99.5 1.4E-12 4.9E-17 147.1 20.3 37 845-882 338-374 (394)
139 3g39_A Variable lymphocyte rec 99.4 2.5E-13 8.4E-18 133.2 11.0 87 829-915 33-119 (170)
140 1a9n_A U2A', U2A'; complex (nu 99.4 2.9E-13 9.8E-18 133.8 11.2 106 617-727 18-126 (176)
141 1a9n_A U2A', U2A'; complex (nu 99.4 2.9E-13 1E-17 133.8 10.2 133 637-776 14-153 (176)
142 2r9u_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 130.3 11.0 87 829-915 36-122 (174)
143 3g39_A Variable lymphocyte rec 99.4 1.9E-12 6.4E-17 126.8 11.5 109 741-891 11-119 (170)
144 2r9u_A Variable lymphocyte rec 99.3 4.2E-12 1.4E-16 124.7 11.7 106 742-889 15-120 (174)
145 3un9_A NLR family member X1; l 99.3 1.1E-13 3.7E-18 153.7 -4.2 43 846-888 207-253 (372)
146 4gt6_A Cell surface protein; l 99.2 9.9E-10 3.4E-14 123.7 25.3 133 635-775 258-390 (394)
147 4gt6_A Cell surface protein; l 99.2 8.3E-10 2.8E-14 124.4 24.5 110 659-773 258-367 (394)
148 2ifg_A High affinity nerve gro 99.2 4.2E-11 1.4E-15 132.8 9.3 83 829-912 34-117 (347)
149 3un9_A NLR family member X1; l 99.1 2.2E-12 7.7E-17 143.2 -2.8 161 593-753 72-253 (372)
150 2ifg_A High affinity nerve gro 99.1 1.2E-10 4.2E-15 128.9 9.4 107 829-937 11-119 (347)
151 4h09_A Hypothetical leucine ri 99.0 4.7E-08 1.6E-12 109.5 24.0 128 615-747 214-341 (379)
152 4h09_A Hypothetical leucine ri 98.9 2.6E-07 9E-12 103.3 25.0 110 612-724 234-343 (379)
153 2ra8_A Uncharacterized protein 98.7 5.3E-09 1.8E-13 114.8 5.0 55 829-885 282-341 (362)
154 2ra8_A Uncharacterized protein 98.7 1.3E-08 4.3E-13 111.8 6.6 60 848-909 277-341 (362)
155 3rw6_A Nuclear RNA export fact 98.3 6.7E-08 2.3E-12 100.2 -0.9 61 829-891 173-237 (267)
156 1io0_A Tropomodulin; LRR prote 98.3 1.4E-07 4.7E-12 93.3 1.3 83 829-911 68-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.3 2.2E-07 7.4E-12 91.9 2.3 64 616-679 34-106 (185)
158 3rw6_A Nuclear RNA export fact 98.2 2.8E-07 9.6E-12 95.6 2.1 84 831-916 148-238 (267)
159 3e4g_A ATP synthase subunit S, 97.7 8.7E-06 3E-10 77.9 2.3 35 248-282 62-96 (176)
160 3e4g_A ATP synthase subunit S, 97.6 1.9E-05 6.4E-10 75.6 1.6 82 644-725 63-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00044 1.5E-08 67.5 2.8 63 617-679 40-111 (197)
162 3rfe_A Platelet glycoprotein I 96.8 0.0022 7.6E-08 58.4 6.8 56 854-911 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00072 2.5E-08 65.9 3.7 64 640-703 39-111 (197)
164 3rfe_A Platelet glycoprotein I 96.4 0.0049 1.7E-07 56.1 6.5 57 829-887 11-68 (130)
165 2lz0_A Uncharacterized protein 52.1 31 0.0011 28.9 6.4 43 632-675 10-52 (100)
166 2lz0_A Uncharacterized protein 43.2 49 0.0017 27.7 6.2 45 654-699 8-52 (100)
167 2k1k_A Ephrin type-A receptor 32.7 32 0.0011 22.9 2.6 14 970-983 14-27 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-91 Score=866.58 Aligned_cols=734 Identities=30% Similarity=0.421 Sum_probs=516.6
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCCCccCCC-CCCCCCccceeecCCCCcEEEEecCCCC--C----CCCCCCCCCcCCEE
Q 036375 29 FSNCSENDLDALIDFKNGLEDPESRLASWK-GSNCCQWHGISCDDDTGAIVAINLGNPY--H----VVNSDSSGSLLEYL 101 (1009)
Q Consensus 29 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~W~-~~~~c~w~gv~c~~~~~~v~~l~l~~~~--g----i~~~l~~l~~L~~L 101 (1009)
++.+.++|++||++||+++.||. .+++|+ +++||.|+||+|+ +|||++|+|++.. | +|++++++++|+++
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 34567899999999999999988 899997 6899999999998 6999999999875 3 78899999999999
Q ss_pred eCCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCC--CCCCCCCCCeeeCCCccccccCCCcccccCCCCCCeEEcC
Q 036375 102 DLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPS--SLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179 (1009)
Q Consensus 102 dLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~--~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~ 179 (1009)
+++.+.+.. +|+.++++++|++|+|++|.+.+.+|. .++++++|++|++++|.+... .....+.++++|++|+++
T Consensus 83 ~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 83 FLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp ECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECC
T ss_pred CCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECC
Confidence 999998754 778999999999999999999999998 999999999999999965321 112223678899999999
Q ss_pred CccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcC
Q 036375 180 RVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDL 259 (1009)
Q Consensus 180 ~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~ 259 (1009)
+|.+++........+.++++|++|++++|.+.+.++. ..+++|++|++++|.+.+.+|. ++++++|++|++++|.+
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence 9988774322222378889999999999988876654 6788888888888888887776 88888888888888888
Q ss_pred cccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCC-CCCCEEEccCCcccccCc
Q 036375 260 YGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANM-TSLTNFDLFDKKVEGGIP 338 (1009)
Q Consensus 260 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~l~~n~~~~~~~ 338 (1009)
.+.+|..++++++|++|++++|.. .+..+.. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+.+|
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l--~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQF--VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCC--EESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred CCcccHHHhcCCCCCEEECCCCcc--cCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 888888888888888888888743 3333332 56666666666666666666666553 666666666666666666
Q ss_pred hhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCccccc
Q 036375 339 SSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGP 418 (1009)
Q Consensus 339 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 418 (1009)
..++++++|++|++++|.+++.+|.. .+..+++|++|++++|.+++.
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~---------------------------------~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMD---------------------------------TLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHH---------------------------------HHTTCTTCCEEECCSSEEEEC
T ss_pred hHHhcCCCccEEECCCCcccCcCCHH---------------------------------HHhcCCCCCEEeCcCCccCcc
Confidence 66665555555555555554444432 144555555555555555555
Q ss_pred CCCCCCCCC-CCcEEeCCCCcCCCCCCcccCC--CCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCC
Q 036375 419 IPASLGNLK-NLTKLNLPGNQLNGTLPETLGS--LPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSS 495 (1009)
Q Consensus 419 ~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 495 (1009)
+|..+.+++ +|++|++++|.+++.+|..+.. +++|++|++++|.+++.++. .+..+++|++|++++|
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N--------- 428 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFN--------- 428 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSS---------
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCC---------
Confidence 555555544 5555555555555555544444 55566666666665544433 1333333333333222
Q ss_pred CCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcC
Q 036375 496 WIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFA 575 (1009)
Q Consensus 496 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~ 575 (1009)
++++.+|..+..
T Consensus 429 ---------------------------------------~l~~~~p~~l~~----------------------------- 440 (768)
T 3rgz_A 429 ---------------------------------------YLSGTIPSSLGS----------------------------- 440 (768)
T ss_dssp ---------------------------------------EEESCCCGGGGG-----------------------------
T ss_pred ---------------------------------------cccCcccHHHhc-----------------------------
Confidence 222222222211
Q ss_pred eEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCC
Q 036375 576 DVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSIS 655 (1009)
Q Consensus 576 ~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 655 (1009)
+++|+.|++++|.+.+.+|..+ ..+++|++|++++|++++.+|..+.++++|++|++++|+++
T Consensus 441 ----------------l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 441 ----------------LSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ----------------CTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ----------------CCCCCEEECCCCcccCcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 1223333333333333444322 34566666666666666666666666666666666666666
Q ss_pred ccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhh
Q 036375 656 GSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG 735 (1009)
Q Consensus 656 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~ 735 (1009)
+.+|..++.+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|..+..+..+..+++..+.-...++....
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 66666666666666666666666666666666666666666666666666666665555544443332110000000000
Q ss_pred hcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEE
Q 036375 736 NGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVI 815 (1009)
Q Consensus 736 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1009)
.......... -.+.+..+..+..++.++.++++.|.++|.+|..++.++.|
T Consensus 584 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L-------------------------- 634 (768)
T 3rgz_A 584 KKECHGAGNL---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM-------------------------- 634 (768)
T ss_dssp CTTCCSSEEE---EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC--------------------------
T ss_pred cccccccccc---cccccccchhhhccccccccccccceecccCchhhhccccc--------------------------
Confidence 0000000000 02345566667777778888888899998888888777766
Q ss_pred eecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCccccc
Q 036375 816 NTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLS 895 (1009)
Q Consensus 816 ~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 895 (1009)
+.||||+|+++|.+|.+++++++|+.|+|++|+++|.||+.|+++++|++||||+|+++|.||..++
T Consensus 635 -------------~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 635 -------------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp -------------CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred -------------cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEeCCCCcceecCCCCCCCCcccCCcCCCCCCCCCCCCCCCCCCCC
Q 036375 896 SLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKCQDDE 947 (1009)
Q Consensus 896 ~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~~~~~~c~~~~ 947 (1009)
++++|++||+|+|+|+|+||.++++.+++..+|.|||++||.|+. .|....
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 999999999999999999999999999999999999999999987 896543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-71 Score=685.62 Aligned_cols=650 Identities=29% Similarity=0.426 Sum_probs=411.0
Q ss_pred CCcc-ceeecCCCCcEEEEecCCCCCCCCCCCCCCcCCEEeCCCCCCCCCC---CCcccCCCCCCceeecccCCCCccCC
Q 036375 63 CQWH-GISCDDDTGAIVAINLGNPYHVVNSDSSGSLLEYLDLSFNTFNDIP---IPEFLGSLENLQYLNLSEAGFTGVVP 138 (1009)
Q Consensus 63 c~w~-gv~c~~~~~~v~~l~l~~~~gi~~~l~~l~~L~~LdLs~~~~~~~~---lp~~i~~l~~L~~L~Ls~~~~~~~lp 138 (1009)
-.|. +..|+.|.|-... . .+++.|||+++.+.+ . +|+.++.+++|+.++++.+.+. .+|
T Consensus 31 ~~W~~~~~~C~w~gv~C~---~------------~~v~~L~L~~~~l~g-~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~ 93 (768)
T 3rgz_A 31 PDWSSNKNPCTFDGVTCR---D------------DKVTSIDLSSKPLNV-GFSAVSSSLLSLTGLESLFLSNSHIN-GSV 93 (768)
T ss_dssp TTCCTTSCGGGSTTEEEE---T------------TEEEEEECTTSCCCE-EHHHHHHHTTTCTTCCEEECTTSCEE-ECC
T ss_pred cCCCCCCCCcCCcceEEC---C------------CcEEEEECCCCCcCC-ccCccChhHhccCcccccCCcCCCcC-CCc
Confidence 4695 6778888764432 1 378999999999988 6 7888999999999999888765 467
Q ss_pred CCCCCCCCCCeeeCCCccccccCCCcccccCCCCCCeEEcCCccCCCCcchhhh--hhcCCCCccEEEcCCCcCCCCCCC
Q 036375 139 SSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMNRVDLSLVGSEWLG--ILKNLPNLTELHLSVCGLTGSITS 216 (1009)
Q Consensus 139 ~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~ 216 (1009)
+.++++++|++||+++|.+. + .++. .++++++|++|+|++|.+.+.++.
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~--------------------------~---~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 144 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLS--------------------------G---PVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEE--------------------------E---EGGGGGGGGGCTTCCEEECCSSEEECCSSC
T ss_pred hhhccCCCCCEEECCCCcCC--------------------------C---cCCChHHHhCCCCCCEEECcCCccCCcCCH
Confidence 88999999999999998532 1 1444 788899999999999999888887
Q ss_pred CCCCCCCCCcEEECCCCCCCCCchhh---hhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCccccccc
Q 036375 217 ITPVNLTSPAVLDLSLNHFNSLFPNW---LVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFR 293 (1009)
Q Consensus 217 ~~~~~l~~L~~L~L~~n~~~~~~p~~---l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 293 (1009)
....++++|++|++++|.+++..|.. +.++++|++|++++|.+.+.+| +..+++|++|++++|.
T Consensus 145 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~----------- 211 (768)
T 3rgz_A 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN----------- 211 (768)
T ss_dssp CSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSC-----------
T ss_pred HHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCc-----------
Confidence 76678889999999999998888876 7788888888888888877665 3667777777776663
Q ss_pred CCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccC
Q 036375 294 GSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVS 373 (1009)
Q Consensus 294 ~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 373 (1009)
+.+.+|. ++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..
T Consensus 212 ---------------l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------- 266 (768)
T 3rgz_A 212 ---------------FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--------- 266 (768)
T ss_dssp ---------------CCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---------
T ss_pred ---------------CCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---------
Confidence 3444444 666666666666666666666666666666666666666666555543
Q ss_pred CCCCCCCCcEEECcCCcCcccCChhhcCC-CCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcc-cCCCC
Q 036375 374 SNSPLPSLISMRLGNNHLKGKLPEWLSQL-ENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPET-LGSLP 451 (1009)
Q Consensus 374 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~ 451 (1009)
.+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|.. +.+++
T Consensus 267 ---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 267 ---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp ---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred ---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 36677777777777777777766554 77888888888877777777788888888888888777667755 77788
Q ss_pred CCCEEEccCcccccccchhhhccCC-CCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEE
Q 036375 452 ELSVLDVSSNSLTGIISEIHFSRLS-KLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLD 530 (1009)
Q Consensus 452 ~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 530 (1009)
+|++|++++|.+++.++.. +..++ +|++|++++|.+
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l------------------------------------------ 380 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNF------------------------------------------ 380 (768)
T ss_dssp TCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEE------------------------------------------
T ss_pred CCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCc------------------------------------------
Confidence 8888888888777665543 34443 555555544433
Q ss_pred ccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCC
Q 036375 531 FSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIP 610 (1009)
Q Consensus 531 ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip 610 (1009)
++.+|..+... .+++|++|++++|.+++.+|
T Consensus 381 ------~~~~~~~~~~~-------------------------------------------~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 381 ------SGPILPNLCQN-------------------------------------------PKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp ------EEECCTTTTCS-------------------------------------------TTCCCCEEECCSSEEEEECC
T ss_pred ------CCCcChhhhhc-------------------------------------------ccCCccEEECCCCccccccC
Confidence 32222222100 00112222222222222222
Q ss_pred chhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCC
Q 036375 611 QNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLT 690 (1009)
Q Consensus 611 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 690 (1009)
..+ ..+++|++|++++|++++.+|..++++++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..++
T Consensus 412 ~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 412 PTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp GGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 211 2233333333333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred CCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEc
Q 036375 691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDL 770 (1009)
Q Consensus 691 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 770 (1009)
+|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+.. +++|+.|++++|+++|.+|..+.....+..+++
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 3333333333333333333333333333333333333333333331 333333333333333333333333222222211
Q ss_pred cC---------C-------------cCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCce
Q 036375 771 AE---------N-------------NLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLF 828 (1009)
Q Consensus 771 s~---------N-------------~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 828 (1009)
.. + .+.|..|..+..+..+
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------------- 610 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR--------------------------------------- 610 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT---------------------------------------
T ss_pred cccccccccccccccccccccccccccccccchhhhccccc---------------------------------------
Confidence 11 0 1222233333222222
Q ss_pred eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 908 (1009)
..++++.|.++|.+|..++++++|+.|||++|+++|.+|..++++++|+.|||++|+++|.||..++++++|++||+|+|
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N 690 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence 55688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCCC-CCCCcccCCcCCCCC
Q 036375 909 QLSGKIPFE-GHMTTFDASSFAGNP 932 (1009)
Q Consensus 909 ~l~g~ip~~-~~~~~~~~~~~~~n~ 932 (1009)
+++|.||.. ..+..+....+.+|+
T Consensus 691 ~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 691 KLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CCEECCCGGGGGCCCCSEEECCSSE
T ss_pred cccCcCChHHhCCCCCCEEECcCCc
Confidence 999999975 344555555666773
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.6e-58 Score=561.63 Aligned_cols=543 Identities=22% Similarity=0.204 Sum_probs=310.7
Q ss_pred hcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCC
Q 036375 194 LKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNL 273 (1009)
Q Consensus 194 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 273 (1009)
++++++|++|+|++|.+++ ++...+..+++|++|++++|.+.+..|..|+++++|++|++++|.+.+..|..++++++|
T Consensus 69 ~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147 (680)
T ss_dssp HHHCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTC
T ss_pred HhcccCcCEEECCCCccCc-cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccC
Confidence 3444444444444444442 232223556666666666666666656667777777777777777777666667777777
Q ss_pred CEEEcCCCCCCCCcccccc--cCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEE
Q 036375 274 QYLSLAGNNNLSGSCSQLF--RGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFD 351 (1009)
Q Consensus 274 ~~L~L~~n~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 351 (1009)
++|++++|.+ .+..+.. ...+++|++|++++|.+.+..|..+..+++|+.|++.++.+.+.....+..
T Consensus 148 ~~L~L~~n~l--~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-------- 217 (680)
T 1ziw_A 148 QELLLSNNKI--QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL-------- 217 (680)
T ss_dssp CEEECCSSCC--CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHH--------
T ss_pred CEEEccCCcc--cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHH--------
Confidence 7777777642 2222221 123345555555555555555555555566666666555544322211110
Q ss_pred cCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCC--CCEEeCcCCcccccCCCCCCCCCCC
Q 036375 352 LSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLEN--LVELTLSYNLLQGPIPASLGNLKNL 429 (1009)
Q Consensus 352 l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~p~~l~~l~~L 429 (1009)
.+ ..++|++|++++|.+.+..|.++..++. |++|++++|.+++..|..|+.+++|
T Consensus 218 ------------~l-----------~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (680)
T 1ziw_A 218 ------------EL-----------ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274 (680)
T ss_dssp ------------HH-----------TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ------------Hh-----------hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccc
Confidence 00 1245666666666666666666665543 7777777777776666777777777
Q ss_pred cEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEeccc
Q 036375 430 TKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRS 509 (1009)
Q Consensus 430 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 509 (1009)
++|++++|.+++..|..+..+++|++|++++|...+.++. ..++.+
T Consensus 275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~---~~lp~i------------------------------- 320 (680)
T 1ziw_A 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL---ASLPKI------------------------------- 320 (680)
T ss_dssp CEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---------CCEE-------------------------------
T ss_pred cEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc---cccccc-------------------------------
Confidence 7777777777766677777777777777776654432211 000000
Q ss_pred CcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCC
Q 036375 510 CQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIP 589 (1009)
Q Consensus 510 ~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~ 589 (1009)
....+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.+.
T Consensus 321 ------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~------------------------- 368 (680)
T 1ziw_A 321 ------DDFSFQWLKCLEHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLR------------------------- 368 (680)
T ss_dssp ------CTTTTTTCTTCCEEECCSCCBCCCCTTTTT-TCTTCCEEECTTCBSCCC-------------------------
T ss_pred ------ChhhcccCCCCCEEECCCCccCCCChhHhc-cccCCcEEECCCCchhhh-------------------------
Confidence 000122233333333333333322222211 112222222222221100
Q ss_pred CCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCC
Q 036375 590 LPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLK 669 (1009)
Q Consensus 590 ~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 669 (1009)
.++...+..+ ..++|+.|++++|++++..|..+..+++|+
T Consensus 369 ------------------~l~~~~f~~~----------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 369 ------------------TLTNETFVSL----------------------AHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp ------------------EECTTTTGGG----------------------TTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ------------------hcchhhhccc----------------------ccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 0111111100 012444555555555444444455555555
Q ss_pred EEECCCCcCcccCC-ccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCccc--ccCchhhhhcCcCCcEEEc
Q 036375 670 VLDLSYSSLSGVIP-ASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFS--GNIPSLLGNGFVGLRILSL 746 (1009)
Q Consensus 670 ~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~ip~~l~~~l~~L~~L~L 746 (1009)
+|++++|++++.+| ..|..+++|++|++++|++++..+..|..+++|++|++++|.+. +.+|..+. .+++|+.|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEEC
Confidence 55555555544333 34455555555555555555444555555555555555555543 34444444 3556666666
Q ss_pred cCCcccccCCcccCCCCCCCEEEccCCcCCCCCCh--------hhhhhhhhhhccchhhhhhccccccceeeceEEEeec
Q 036375 747 RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPG--------SVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTK 818 (1009)
Q Consensus 747 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1009)
++|++++..|..+..+++|++|++++|++++..+. .+.++++|
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L----------------------------- 538 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL----------------------------- 538 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC-----------------------------
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC-----------------------------
Confidence 66666655555566666666666666666643221 23444444
Q ss_pred CCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCccccc-CC
Q 036375 819 GSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLS-SL 897 (1009)
Q Consensus 819 ~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l 897 (1009)
+.|+|++|+++...+..|.++++|+.|+|++|++++.++..|.++++|+.|+|++|++++..|..+. .+
T Consensus 539 ----------~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 608 (680)
T 1ziw_A 539 ----------HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608 (680)
T ss_dssp ----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHH
T ss_pred ----------CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccc
Confidence 7888888988855556789999999999999999988888899999999999999999999998887 78
Q ss_pred CCCCeEeCCCCcceecCCC
Q 036375 898 SFLGYINLSRNQLSGKIPF 916 (1009)
Q Consensus 898 ~~L~~L~ls~N~l~g~ip~ 916 (1009)
++|+++++++|++.+..+.
T Consensus 609 ~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 609 RNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCSEEECTTCCCCBCCCC
T ss_pred cccCEEEccCCCcccCCcc
Confidence 9999999999999988764
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-57 Score=556.37 Aligned_cols=578 Identities=22% Similarity=0.236 Sum_probs=440.9
Q ss_pred CCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEE
Q 036375 198 PNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLS 277 (1009)
Q Consensus 198 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 277 (1009)
+++++|++++|.+++..+.. +.++++|++|++++|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAAN-FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGG-GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHH-HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 57778888887777544433 37778888888888888888788888888888888888887765555678888888888
Q ss_pred cCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhh--cccCCCEEEcCCC
Q 036375 278 LAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIA--RLCYLKEFDLSGN 355 (1009)
Q Consensus 278 L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n 355 (1009)
+++|.+ ....+..++.+++|++|++++|.+.+..|..++++++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 104 L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSNSI--QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSSCC--CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCCcc--CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 888743 344445667777888888888877777777777888888888888888776666554 3477888888888
Q ss_pred cCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhh---cCCCCCCEEeCcCCcccccCCCCCCCCCC--Cc
Q 036375 356 NLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWL---SQLENLVELTLSYNLLQGPIPASLGNLKN--LT 430 (1009)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~ 430 (1009)
.+++..|..+. .+++|+.+++.++.+.+.....+ ...++|++|++++|.+++..|.++..++. |+
T Consensus 182 ~l~~~~~~~~~----------~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~ 251 (680)
T 1ziw_A 182 QIKEFSPGCFH----------AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251 (680)
T ss_dssp CCCCBCTTGGG----------GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCC
T ss_pred cccccChhhhh----------hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCC
Confidence 77777776665 56777777777776653222211 13467778888887777777777776644 77
Q ss_pred EEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccC
Q 036375 431 KLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSC 510 (1009)
Q Consensus 431 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~ 510 (1009)
+|++++|.+++..|..+..+++|++|++++|.+++..+. .+..+++|++|++++|..
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~---------------------- 308 (680)
T 1ziw_A 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFT---------------------- 308 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBC----------------------
T ss_pred EEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhh----------------------
Confidence 777777777766666777777777777777777654443 355555555555544321
Q ss_pred cCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCC
Q 036375 511 QLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPL 590 (1009)
Q Consensus 511 ~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~ 590 (1009)
.+.++.. .+|
T Consensus 309 --------------------------~~~~~~~--------------------~lp------------------------ 318 (680)
T 1ziw_A 309 --------------------------KQSISLA--------------------SLP------------------------ 318 (680)
T ss_dssp --------------------------CC--------------------------CC------------------------
T ss_pred --------------------------hcccccc--------------------ccc------------------------
Confidence 1111000 000
Q ss_pred CCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCcc--CcCcccCC--C
Q 036375 591 PIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS--ISSSIGNC--T 666 (1009)
Q Consensus 591 ~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l--~ 666 (1009)
.++...+..+++|++|++++|++++..+..|.++++|++|++++|.+... .+..+..+ +
T Consensus 319 -----------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 319 -----------------KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp -----------------EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred -----------------ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 11222345677888888888888888888888888999999998875432 22334433 5
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCc-hhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEE
Q 036375 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP-SSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILS 745 (1009)
Q Consensus 667 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~ 745 (1009)
+|+.|++++|++++..|.+|..+++|++|++++|++++.+| ..|.++++|++|++++|++.+..+..+. .+++|+.|+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~ 460 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLM 460 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEE
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCcccccch
Confidence 89999999999999999999999999999999999987666 7899999999999999999866666665 599999999
Q ss_pred ccCCccc--ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCC
Q 036375 746 LRSNAFS--GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKD 823 (1009)
Q Consensus 746 L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1009)
+++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L---------------------------------- 506 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL---------------------------------- 506 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----------------------------------
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc----------------------------------
Confidence 9999987 5789999999999999999999998888888888877
Q ss_pred CCCceeEEEccCCccCCCCC--------ccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCccccc
Q 036375 824 TPRLFHFIDLSGNNLHGDFP--------TQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLS 895 (1009)
Q Consensus 824 ~~~~l~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~ 895 (1009)
+.|+|++|++++..+ ..++++++|++|+|++|+++...++.|+++++|+.|||++|++++..+..|.
T Consensus 507 -----~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 507 -----EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp -----CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred -----CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence 899999999987532 3488999999999999999977667899999999999999999988888899
Q ss_pred CCCCCCeEeCCCCcceecCCCCC--CCCcccCCcCCCCCCCCCCC
Q 036375 896 SLSFLGYINLSRNQLSGKIPFEG--HMTTFDASSFAGNPGLCGDP 938 (1009)
Q Consensus 896 ~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~~~~~~n~~lc~~~ 938 (1009)
.+++|++|++++|++++..|..- .+..+....+.|||+.|+++
T Consensus 582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999999999999876421 34556667789999999865
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-53 Score=510.54 Aligned_cols=535 Identities=22% Similarity=0.201 Sum_probs=390.8
Q ss_pred EEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCC
Q 036375 302 LNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSL 381 (1009)
Q Consensus 302 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L 381 (1009)
++.++..+. .+|..+. +.+++|++++|.+++..|..|+++++|++|++++|.+.+..|..+. .+++|
T Consensus 17 ~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----------~l~~L 83 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ----------SQHRL 83 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT----------TCTTC
T ss_pred EECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc----------Ccccc
Confidence 344443333 3444443 2566666666666666566666666666666666666665555555 56677
Q ss_pred cEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCc
Q 036375 382 ISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSN 461 (1009)
Q Consensus 382 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 461 (1009)
++|++++|.+.+..|..++.+++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp CEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred CeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence 77777777776666667777777777777777777655666777777777777777776543334444777777777777
Q ss_pred ccccccchhhhccCCCCc--EEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccC-
Q 036375 462 SLTGIISEIHFSRLSKLK--FLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG- 538 (1009)
Q Consensus 462 ~l~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~- 538 (1009)
.+++..+. .+..+++|+ +|++++|.+....+..+. ...++.+++++|. ..+..+..+..+....+.-..+.+
T Consensus 164 ~l~~~~~~-~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 164 AIHYLSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp CCCEECHH-HHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred cccccChh-hhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhccc
Confidence 77654333 466777777 677777776655444433 2456666666664 233444444444433333222211
Q ss_pred ---CCCchhhhccC--cccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchh
Q 036375 539 ---PIPNWFWDISS--KLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNI 613 (1009)
Q Consensus 539 ---~~p~~~~~~~~--~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~ 613 (1009)
.++...+..+. +++.+++++|.+++..+..+. .+++|++|++++|.++ .+|..+
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~--------------------~l~~L~~L~l~~n~l~-~lp~~l 297 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH--------------------CFSGLQELDLTATHLS-ELPSGL 297 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT--------------------TCTTCSEEECTTSCCS-CCCSSC
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhc--------------------cccCCCEEeccCCccC-CCChhh
Confidence 11111111111 566666666666544333221 2468888899998887 777654
Q ss_pred hcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcC-cccCCCCCCEEECCCCcCcccC--CccccCCC
Q 036375 614 SGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISS-SIGNCTFLKVLDLSYSSLSGVI--PASLGQLT 690 (1009)
Q Consensus 614 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~ 690 (1009)
..+++|++|++++|++++..|..+.++++|++|++++|.+.+.+|. .+..+++|++|++++|++++.. |..+..++
T Consensus 298 -~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 376 (606)
T 3t6q_A 298 -VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376 (606)
T ss_dssp -CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT
T ss_pred -cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC
Confidence 6788999999999999988888899999999999999998866654 4889999999999999998776 77888999
Q ss_pred CCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEc
Q 036375 691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDL 770 (1009)
Q Consensus 691 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 770 (1009)
+|++|++++|++++..|..|..+++|++|++++|++.+..|...+..+++|+.|++++|.+++..|..+..+++|++|++
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 99999999999998888899999999999999999987777654446899999999999999888888999999999999
Q ss_pred cCCcCCCC---CChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcccc
Q 036375 771 AENNLTGS---IPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLT 847 (1009)
Q Consensus 771 s~N~l~~~---~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~ 847 (1009)
++|++++. .+..+..+++| +.|+|++|++++..|..++
T Consensus 457 ~~n~l~~~~~~~~~~~~~l~~L---------------------------------------~~L~Ls~n~l~~~~~~~~~ 497 (606)
T 3t6q_A 457 QGNHFPKGNIQKTNSLQTLGRL---------------------------------------EILVLSFCDLSSIDQHAFT 497 (606)
T ss_dssp TTCBCGGGEECSSCGGGGCTTC---------------------------------------CEEECTTSCCCEECTTTTT
T ss_pred CCCCCCccccccchhhccCCCc---------------------------------------cEEECCCCccCccChhhhc
Confidence 99999873 23456666666 8899999999999999999
Q ss_pred CcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCC
Q 036375 848 KLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF 916 (1009)
Q Consensus 848 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 916 (1009)
++++|+.|+|++|++++.+|+.+.++++| +||+++|++++.+|..++.+++|+++++++|++++.++.
T Consensus 498 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99999999999999999999999999999 999999999999999999999999999999999887663
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-53 Score=530.97 Aligned_cols=578 Identities=21% Similarity=0.241 Sum_probs=269.6
Q ss_pred EEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCC-CccccccccccCCCCCCCC
Q 036375 302 LNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSL-PEILQGTDLCVSSNSPLPS 380 (1009)
Q Consensus 302 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~~l~~ 380 (1009)
.+.++++++ .+|. ..++|++|++++|.+++..|..|.++++|++|++++|...+.+ |..+. .+++
T Consensus 9 ~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~----------~L~~ 74 (844)
T 3j0a_A 9 AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR----------NLPN 74 (844)
T ss_dssp EEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS----------SCTT
T ss_pred EEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc----------CCCC
Confidence 344444444 3343 2356666666666666666666666666666666666444333 33333 5666
Q ss_pred CcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCC--CCCCCCCcEEeCCCCcCCCCCC-cccCCCCCCCEEE
Q 036375 381 LISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPAS--LGNLKNLTKLNLPGNQLNGTLP-ETLGSLPELSVLD 457 (1009)
Q Consensus 381 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ 457 (1009)
|++|++++|.+.+..|.+|..+++|++|+|++|.+++.+|.. +.++++|++|++++|.+++..+ ..++++++|++|+
T Consensus 75 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp CCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred CCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 666666666666666666666666666666666666544443 6666667777776666665443 3566666677777
Q ss_pred ccCcccccccchhhhccC--CCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCc
Q 036375 458 VSSNSLTGIISEIHFSRL--SKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNAS 535 (1009)
Q Consensus 458 Ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~ 535 (1009)
+++|.+++..+. .+..+ ++|+.|++++|.+.......+..... .+.. ..|+.|++++|.
T Consensus 155 Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~-----------------~~~~-~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 155 FSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN-----------------PFRN-MVLEILDVSGNG 215 (844)
T ss_dssp EESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC-----------------TTTT-CCBSEEBCSSCC
T ss_pred CCCCcCCeeCHH-HcccccCCccceEECCCCccccccccchhhcCC-----------------cccc-CceeEEecCCCc
Confidence 776666654443 24444 56666666666554333222211111 0000 125555555555
Q ss_pred ccCCCCchhhhcc--CcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchh
Q 036375 536 ISGPIPNWFWDIS--SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNI 613 (1009)
Q Consensus 536 i~~~~p~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~ 613 (1009)
+++.++..+.... .++..+.++.+....... ...+. +...+.+.+. ..++++.|++++|.+.+.. ...
T Consensus 216 l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~----~~~l~--~~~~~~f~~l---~~~~L~~L~Ls~n~l~~~~-~~~ 285 (844)
T 3j0a_A 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFG----FHNIK--DPDQNTFAGL---ARSSVRHLDLSHGFVFSLN-SRV 285 (844)
T ss_dssp SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS----CSSST--TGGGTTTTTT---TTSCCCEEECTTCCCCEEC-SCC
T ss_pred CchhHHHHHHhhcCcccccceeccccccccccc----ccccC--CCChhhhhcc---ccCCccEEECCCCcccccC-hhh
Confidence 5554444443322 234444444222211100 00000 0001111111 1134555555555554322 233
Q ss_pred hcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCC
Q 036375 614 SGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQ 693 (1009)
Q Consensus 614 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 693 (1009)
+..+++|++|++++|++++..|..|.++++|++|++++|++++..|..|.++++|++|++++|++.+..+..|..+++|+
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 34455555555555555555555555555555555555555555555555555555555555555554444555555555
Q ss_pred EEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccC-CcccCCCCCCCEEEccC
Q 036375 694 SLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEI-PSKLSNLSSLQVLDLAE 772 (1009)
Q Consensus 694 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~ 772 (1009)
.|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+..+++|+.|++++
T Consensus 366 ~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 366 TLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp EEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred EEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence 555555555421 11445555555555554 44432 334555555555554321 11233455555555555
Q ss_pred CcCCCCCCh-hhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCC
Q 036375 773 NNLTGSIPG-SVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVG 851 (1009)
Q Consensus 773 N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~ 851 (1009)
|++++..+. .+..+++|+.+....+.+......+ ...........++.|||++|++++..|..|.++++
T Consensus 436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE----------LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC----------CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred CcccccccccccccCCccccccCCCCccccccccc----------cchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 555543222 1111222200000000000000000 00000000001244555555555555555555555
Q ss_pred CCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCcccCCcCCCC
Q 036375 852 LVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGN 931 (1009)
Q Consensus 852 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n 931 (1009)
|+.|+|++|++++.+|..+. ++|+.|||++|++++.+|..|. +|+++++++|++.+.++.. .|......+|
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~ 576 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTN 576 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTT
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcC
Confidence 55555555555544444443 4555555555555555554432 3445555555554443321 1111111233
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 036375 932 PGLCGDPLPVKCQDDESDKG 951 (1009)
Q Consensus 932 ~~lc~~~~~~~c~~~~~~~~ 951 (1009)
..+||.+....|..+....+
T Consensus 577 ~~~~~~~~~~~C~~p~~~~g 596 (844)
T 3j0a_A 577 VTIAGPPADIYCVYPDSFSG 596 (844)
T ss_dssp TTTCCCGGGCCCSSCSSSCS
T ss_pred cccccccccCccCCchhhCC
Confidence 34445555567876654433
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-52 Score=502.56 Aligned_cols=540 Identities=20% Similarity=0.203 Sum_probs=395.5
Q ss_pred cEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcc
Q 036375 226 AVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFA 305 (1009)
Q Consensus 226 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~ 305 (1009)
++++.+++.++.. |..+. +++++|++++|++.+..+..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n------------------------ 66 (606)
T 3vq2_A 14 ITYQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC------------------------ 66 (606)
T ss_dssp TEEECTTSCCSSC-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC------------------------
T ss_pred CceEccCCCcccC-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC------------------------
Confidence 4566666666544 33222 56666666666666655556666666666666655
Q ss_pred cccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEE
Q 036375 306 SNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMR 385 (1009)
Q Consensus 306 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 385 (1009)
.+.+..|..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..+. .+++|++|+
T Consensus 67 --~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~----------~l~~L~~L~ 134 (606)
T 3vq2_A 67 --EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG----------QLITLKKLN 134 (606)
T ss_dssp --CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT----------TCTTCCEEE
T ss_pred --cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccC----------CCCCCCEEe
Confidence 44555666777788888888888888777777788888888888888887766665555 688888888
Q ss_pred CcCCcCcc-cCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCc----EEeCCCCcCCCCCCcccCCCCCCCEEEccC
Q 036375 386 LGNNHLKG-KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLT----KLNLPGNQLNGTLPETLGSLPELSVLDVSS 460 (1009)
Q Consensus 386 L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 460 (1009)
+++|.+.+ .+|..++++++|++|++++|.+++..|..++.+++|+ +|++++|.+++..+..+.. .+|++|++++
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~ 213 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRG 213 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEES
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccC
Confidence 88888875 5688899999999999999999988888887776665 7999999998655555544 4899999999
Q ss_pred cccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCC
Q 036375 461 NSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPI 540 (1009)
Q Consensus 461 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~ 540 (1009)
|.+.+......+.+++.|+.+++..+.+....... ...+..+..+..
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~------------------~~~~~~~~~l~~--------------- 260 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE------------------IFEPSIMEGLCD--------------- 260 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS------------------CCCGGGGTTGGG---------------
T ss_pred CccchhHHHHHhccccccccccccccccccCCccc------------------ccChHHhhhhhh---------------
Confidence 98876555566888888888877655432111000 000111111111
Q ss_pred CchhhhccCcccEEEe-ccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCC
Q 036375 541 PNWFWDISSKLSLLNV-SLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPN 619 (1009)
Q Consensus 541 p~~~~~~~~~L~~L~l-s~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~ 619 (1009)
..++.+++ ..|.+.+.+|. +. .+++|+.|++++|.+. .+| .+..+++
T Consensus 261 --------l~l~~l~l~~~~~~~~~~~~-~~--------------------~l~~L~~L~l~~~~~~-~l~--~l~~~~~ 308 (606)
T 3vq2_A 261 --------VTIDEFRLTYTNDFSDDIVK-FH--------------------CLANVSAMSLAGVSIK-YLE--DVPKHFK 308 (606)
T ss_dssp --------SEEEEEEECCCTTCCGGGGS-CG--------------------GGTTCSEEEEESCCCC-CCC--CCCTTCC
T ss_pred --------ccHhheeccccccccccccc-cc--------------------cCCCCCEEEecCccch-hhh--hcccccc
Confidence 02223333 33333333332 10 1245555666666554 444 3456777
Q ss_pred ccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCccc--CCccccCCCCCCEEEc
Q 036375 620 LIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGV--IPASLGQLTRLQSLHL 697 (1009)
Q Consensus 620 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L 697 (1009)
|++|++++|++ +.+| .+ .+++|++|++++|+..+.. .+..+++|++|++++|++++. .|..+..+++|++|++
T Consensus 309 L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L 383 (606)
T 3vq2_A 309 WQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383 (606)
T ss_dssp CSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEEC
T ss_pred CCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeEC
Confidence 88888888877 5566 44 7888888888888655443 566788888888888888866 3777888888888888
Q ss_pred cCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCC
Q 036375 698 NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG 777 (1009)
Q Consensus 698 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 777 (1009)
++|.+++ +|..+..+++|++|++++|++.+..|...+..+++|+.|++++|.+++..|..+..+++|++|++++|++++
T Consensus 384 ~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 384 SFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 8888875 557788888888888888888877663333358889999999998888888888889999999999999887
Q ss_pred -CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEE
Q 036375 778 -SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLN 856 (1009)
Q Consensus 778 -~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 856 (1009)
.+|..++.+++| +.|+|++|++++..|..++++++|++|+
T Consensus 463 ~~~~~~~~~l~~L---------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 463 NTLSNVFANTTNL---------------------------------------TFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp GEECSCCTTCTTC---------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cchHHhhccCCCC---------------------------------------CEEECCCCcCCccChhhhcccccCCEEE
Confidence 477778777777 8889999999998899999999999999
Q ss_pred ccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC-CCCeEeCCCCcceecCCC
Q 036375 857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS-FLGYINLSRNQLSGKIPF 916 (1009)
Q Consensus 857 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip~ 916 (1009)
|++|++++.+|..++++++|++||+++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999999999999999999999 5777788887 599999999999887764
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.6e-52 Score=499.91 Aligned_cols=531 Identities=20% Similarity=0.196 Sum_probs=386.8
Q ss_pred EEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCC
Q 036375 325 NFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLEN 404 (1009)
Q Consensus 325 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 404 (1009)
.++.++..++ .+|..+. +.+++|++++|.+++..|..+. .+++|++|++++|.+.+..|..|.++++
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~----------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 82 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFS----------RLINLTFLDLTRCQIYWIHEDTFQSQHR 82 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTST----------TCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhc----------cCccceEEECCCCccceeChhhccCccc
Confidence 5555555554 4554443 2566666666666655555544 4666666666666666555666666666
Q ss_pred CCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCC
Q 036375 405 LVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLS 484 (1009)
Q Consensus 405 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 484 (1009)
|++|++++|.+++..|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+++.... .+..+++|++|+++
T Consensus 83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQ 161 (606)
T ss_dssp CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECC
T ss_pred cCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc-cccCCcccCEEEcc
Confidence 66666666666655566666666666666666666654455566666666666666666543222 13335555555555
Q ss_pred CCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCcc--EEEccCCcccCCCCchhhhccCcccEEEecccccc
Q 036375 485 SNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVS--FLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ 562 (1009)
Q Consensus 485 ~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~ 562 (1009)
+|.+ .+..+..+..+++|+ .+++++|.+++..|..+.. ..|+.+++++|...
T Consensus 162 ~n~l------------------------~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~--~~L~~L~l~~~~~~ 215 (606)
T 3t6q_A 162 NNAI------------------------HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS--AVFQSLNFGGTQNL 215 (606)
T ss_dssp SSCC------------------------CEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT--CEEEEEECTTCSCH
T ss_pred cCcc------------------------cccChhhhhhhcccceeEEecCCCccCccChhHhhh--ccccccccCCchhH
Confidence 5554 444444555555555 5555555555555444432 35555555555311
Q ss_pred ccCCCCCCCCCcCeEeccC------CCCCCCCCCCC--CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccC
Q 036375 563 GQLPNPLNIAPFADVDFRS------NLLEGPIPLPI--VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKI 634 (1009)
Q Consensus 563 ~~~~~~~~~~~l~~l~l~~------n~l~~~~~~~~--~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~ 634 (1009)
......+....+..+.+.. ..+....+..+ .+++.|++++|.++ .++...+..+++|++|++++|+++ .+
T Consensus 216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~l 293 (606)
T 3t6q_A 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-EL 293 (606)
T ss_dssp HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CC
T ss_pred HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CC
Confidence 1100001111111111110 01111111111 27899999999998 566677788999999999999998 67
Q ss_pred CcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCc-cccCCCCCCEEEccCccccCCC--chhhc
Q 036375 635 PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPA-SLGQLTRLQSLHLNNNKLTGNL--PSSFQ 711 (1009)
Q Consensus 635 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~ 711 (1009)
|..+.++++|++|++++|++.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++.. +..+.
T Consensus 294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 88899999999999999999998899999999999999999999977665 5899999999999999999765 77899
Q ss_pred CCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcc-cCCCCCCCEEEccCCcCCCCCChhhhhhhhhh
Q 036375 712 NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSK-LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMA 790 (1009)
Q Consensus 712 ~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 790 (1009)
.+++|++|++++|++.+..|..+. .+++|+.|++++|++.+..|.. +..+++|++|++++|++++..|..++.+++|
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L- 451 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL- 451 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-
T ss_pred cCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-
Confidence 999999999999999977777766 4999999999999999877654 8999999999999999999999988888877
Q ss_pred hccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCC---CCccccCcCCCCeEEccCCcccccCC
Q 036375 791 HVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGD---FPTQLTKLVGLVVLNLSRNHIGGQIP 867 (1009)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p 867 (1009)
+.|+|++|++++. .+..+..+++|+.|++++|++++.+|
T Consensus 452 --------------------------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 452 --------------------------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp --------------------------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred --------------------------------------CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 8999999999883 34679999999999999999999999
Q ss_pred CCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC-CCCCcccCCcCCCCCCCCCCC
Q 036375 868 ENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE-GHMTTFDASSFAGNPGLCGDP 938 (1009)
Q Consensus 868 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~lc~~~ 938 (1009)
..|+++++|++|||++|++++.+|..+.+++.| +||+++|++++.+|.. ..+..+....+.|||+.|.++
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999999999999999999 9999999999887753 334455666789999988654
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-51 Score=495.93 Aligned_cols=536 Identities=21% Similarity=0.213 Sum_probs=411.1
Q ss_pred cEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCC
Q 036375 300 QILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLP 379 (1009)
Q Consensus 300 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~ 379 (1009)
++++.+++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..|..+. .++
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~----------~l~ 80 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH----------GLH 80 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----------TCT
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh----------chh
Confidence 34555555554 4555443 6777777777777776666777777777777777777766666555 577
Q ss_pred CCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCC-CCCcccCCCCCCCEEEc
Q 036375 380 SLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNG-TLPETLGSLPELSVLDV 458 (1009)
Q Consensus 380 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L 458 (1009)
+|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++
T Consensus 81 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred hcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 78888888887777777778888888888888888877766778888888888888888875 46777888888888888
Q ss_pred cCcccccccchhhhccCCCCc----EEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCC
Q 036375 459 SSNSLTGIISEIHFSRLSKLK----FLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNA 534 (1009)
Q Consensus 459 s~n~l~~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n 534 (1009)
++|.+++..+. .++.+++|+ +|++++|.+....... +... +|++|++++|
T Consensus 161 s~n~l~~~~~~-~~~~l~~L~~~l~~L~l~~n~l~~~~~~~------------------------~~~~-~L~~L~L~~n 214 (606)
T 3vq2_A 161 SYNYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDFIQDQA------------------------FQGI-KLHELTLRGN 214 (606)
T ss_dssp CSSCCCEECTT-TTHHHHHCTTCCCEEECTTCCCCEECTTT------------------------TTTC-EEEEEEEESC
T ss_pred cCCcceecChh-hhhhhhccccccceeeccCCCcceeCccc------------------------ccCc-eeeeeeccCC
Confidence 88888765443 355544443 6777777664433322 2222 4566666666
Q ss_pred cccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCC--CCccEEEc-cCCcCCCcCCc
Q 036375 535 SISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPI--VEIELLDL-SNNHFSGPIPQ 611 (1009)
Q Consensus 535 ~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~--~~L~~L~L-s~n~l~~~ip~ 611 (1009)
.+++.........++.++.+++..+.+.+...-.. +.+..+..+ ..++.+++ ..+.+.+.+|.
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~--------------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 280 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI--------------FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC--------------CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccc--------------cChHHhhhhhhccHhheeccccccccccccc
Confidence 55533322333345566666655544432111000 000001111 24677777 77888888876
Q ss_pred hhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCC
Q 036375 612 NISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTR 691 (1009)
Q Consensus 612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 691 (1009)
+..+++|+.|++++|.+.. +| .+..+++|++|++++|++ +.+| .+ .+++|++|++++|+..+.. .+..+++
T Consensus 281 --~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~ 351 (606)
T 3vq2_A 281 --FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPS 351 (606)
T ss_dssp --CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTT
T ss_pred --cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCC
Confidence 6789999999999999975 44 888999999999999999 6777 45 9999999999999766554 5778999
Q ss_pred CCEEEccCccccCC--CchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCC-cccCCCCCCCEE
Q 036375 692 LQSLHLNNNKLTGN--LPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP-SKLSNLSSLQVL 768 (1009)
Q Consensus 692 L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L 768 (1009)
|++|++++|++++. .|..+..+++|++|++++|.++ .+|..+. .+++|+.|++++|++.+..| ..+..+++|++|
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 99999999999876 4889999999999999999998 5776665 59999999999999998887 689999999999
Q ss_pred EccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCC-CCCcccc
Q 036375 769 DLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHG-DFPTQLT 847 (1009)
Q Consensus 769 ~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~-~~p~~l~ 847 (1009)
++++|++++..|..++++++| +.|++++|.+++ .+|..++
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L---------------------------------------~~L~l~~n~l~~~~~~~~~~ 470 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSL---------------------------------------NTLKMAGNSFKDNTLSNVFA 470 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTC---------------------------------------CEEECTTCEEGGGEECSCCT
T ss_pred ECcCCCCCccchhhhcCCCCC---------------------------------------CEEECCCCcCCCcchHHhhc
Confidence 999999999999999888877 899999999998 4799999
Q ss_pred CcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC-CCCC-cccC
Q 036375 848 KLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE-GHMT-TFDA 925 (1009)
Q Consensus 848 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~-~~~~ 925 (1009)
.+++|++|+|++|++++.+|..++++++|++|++++|++++.+|..++.+++|++||+++|+++ .+|.. ..+. .+..
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF 549 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999998 56654 2222 3555
Q ss_pred CcCCCCCCCCCCCC
Q 036375 926 SSFAGNPGLCGDPL 939 (1009)
Q Consensus 926 ~~~~~n~~lc~~~~ 939 (1009)
..+.+||+.|+++.
T Consensus 550 l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 550 FNLTNNSVACICEH 563 (606)
T ss_dssp EECCSCCCCCSSTT
T ss_pred EEccCCCcccCCcc
Confidence 67899999997654
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-50 Score=506.35 Aligned_cols=537 Identities=20% Similarity=0.192 Sum_probs=418.7
Q ss_pred CEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccC-ChhhcCC
Q 036375 324 TNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKL-PEWLSQL 402 (1009)
Q Consensus 324 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l 402 (1009)
+..+.++++++ .+|. -.+++++|++++|.+++..|..+. .+++|++|++++|...+.+ |..|.++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~----------~l~~L~~LdLs~n~~~~~i~~~~f~~L 72 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFP----------FLEQLQLLELGSQYTPLTIDKEAFRNL 72 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCS----------SCCSCSEEEECTTCCCCEECTTTTSSC
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCc----------ccccCeEEeCCCCCCccccCHHHhcCC
Confidence 35667777777 4555 457889999999988877777666 7888999999988655555 7788889
Q ss_pred CCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcc--cCCCCCCCEEEccCcccccccchhhhccCCCCcE
Q 036375 403 ENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPET--LGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKF 480 (1009)
Q Consensus 403 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 480 (1009)
++|++|+|++|.+++..|.+|.++++|++|+|++|.+++.+|.. +.++++|++|++++|.+++..+...|+++++|++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 99999999999988888888999999999999999888766654 8888899999999998887665556888888888
Q ss_pred EeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccC--CCccEEEccCCcccCCCCchhhhc-----cCcccE
Q 036375 481 LGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQ--QGVSFLDFSNASISGPIPNWFWDI-----SSKLSL 553 (1009)
Q Consensus 481 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~ls~n~i~~~~p~~~~~~-----~~~L~~ 553 (1009)
|++++|.+. +..+..+..+ ++|+.|++++|.+.+..|..+... ...|+.
T Consensus 153 L~Ls~N~i~------------------------~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 208 (844)
T 3j0a_A 153 IDFSSNQIF------------------------LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208 (844)
T ss_dssp EEEESSCCC------------------------CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred EECCCCcCC------------------------eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeE
Confidence 888887664 3444555544 677777888887777666544321 124999
Q ss_pred EEeccccccccCCCCCC----CCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcC--CCCccEEEccC
Q 036375 554 LNVSLNQLQGQLPNPLN----IAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGS--MPNLIFLSVSG 627 (1009)
Q Consensus 554 L~ls~n~l~~~~~~~~~----~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~--l~~L~~L~Ls~ 627 (1009)
|++++|.+++.++..+. ...+..+.+..+..... ...+.+.+. ....+.. .++|++|++++
T Consensus 209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~------------~~~~~l~~~-~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG------------FGFHNIKDP-DQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS------------SSCSSSTTG-GGTTTTTTTTSCCCEEECTT
T ss_pred EecCCCcCchhHHHHHHhhcCcccccceeccccccccc------------ccccccCCC-ChhhhhccccCCccEEECCC
Confidence 99999999988876543 23444444443222111 112233222 1222233 37899999999
Q ss_pred CcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCc
Q 036375 628 NRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP 707 (1009)
Q Consensus 628 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 707 (1009)
|.+++..+..|..+++|+.|++++|++++..|..|.++++|++|++++|++++..|..|..+++|+.|++++|++.+..+
T Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred CcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCC-hhhhhh
Q 036375 708 SSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP-GSVGDL 786 (1009)
Q Consensus 708 ~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l 786 (1009)
..|..+++|++|++++|.++ .++. +++|+.|++++|+++ .+|.. ..+++.|++++|++++... ..+.++
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~-~i~~-----~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALT-TIHF-----IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSC-CCSS-----CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred hhhcCCCCCCEEECCCCCCC-cccC-----CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcC
Confidence 88999999999999999998 4543 789999999999998 56654 5679999999999997532 234466
Q ss_pred hhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccC-----CCCCccccCcCCCCeEEccCCc
Q 036375 787 KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLH-----GDFPTQLTKLVGLVVLNLSRNH 861 (1009)
Q Consensus 787 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N~ 861 (1009)
++|+.+....+.+.. ............++.|+|++|.++ +..|..|.++++|+.|+|++|+
T Consensus 426 ~~L~~L~Ls~N~l~~--------------~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 426 PHLQILILNQNRFSS--------------CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491 (844)
T ss_dssp TTCCEEEEESCCCCC--------------CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred CccceeeCCCCcccc--------------cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence 666544322221100 000111222346799999999997 4556779999999999999999
Q ss_pred ccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCcccCCcCCCCCCCCCCCC
Q 036375 862 IGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPL 939 (1009)
Q Consensus 862 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~~~ 939 (1009)
+++.+|..|.++++|+.|+|++|++++..|..+. ++|++||+++|+++|.+|.. +..+....+.|||+.|.+++
T Consensus 492 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred ccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 9999999999999999999999999998888877 89999999999999999964 55666777899999998764
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-51 Score=494.51 Aligned_cols=505 Identities=20% Similarity=0.267 Sum_probs=308.6
Q ss_pred CCHHHHHHHHHhhhcCCCCCC--------CccCCC-CCCCCCc---cceeecCCCCcEEEEecCCCC--C-CCCCCCCCC
Q 036375 32 CSENDLDALIDFKNGLEDPES--------RLASWK-GSNCCQW---HGISCDDDTGAIVAINLGNPY--H-VVNSDSSGS 96 (1009)
Q Consensus 32 ~~~~~~~~ll~~k~~~~~~~~--------~~~~W~-~~~~c~w---~gv~c~~~~~~v~~l~l~~~~--g-i~~~l~~l~ 96 (1009)
....|+.||.+||.++.++.. ..++|+ +++||.| .||+|+.. |||++|+|++.. | +|+++++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 345799999999999865432 234798 6789999 99999875 999999999876 7 899999999
Q ss_pred cCCEEeCCCCCCCC-----------CCCCcccCCCCCCceeecccCCCCccCCCCCCCC-CCCCeeeCCCccccccCCCc
Q 036375 97 LLEYLDLSFNTFND-----------IPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNL-HRLQYFDVSAELFALSADSL 164 (1009)
Q Consensus 97 ~L~~LdLs~~~~~~-----------~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L-~~L~~L~Ls~~~~~~~~~~~ 164 (1009)
+|++|||++|.+.. ..+|... +.+|| ++++++.+.+.+|..++.+ ..+..+++....
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~-------- 174 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS-------- 174 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC--------
T ss_pred cceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc--------
Confidence 99999999986521 0233332 45566 7777766666555544321 112222221110
Q ss_pred ccccCCCCCCeEEcCCccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEEC--CCCCCCCCchhh
Q 036375 165 DWLTGLVSLKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDL--SLNHFNSLFPNW 242 (1009)
Q Consensus 165 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L--~~n~~~~~~p~~ 242 (1009)
+.. .....++.+.+ ..|++++ +|..
T Consensus 175 ---------------------------------------------~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~ 201 (636)
T 4eco_A 175 ---------------------------------------------IKK-------SSRITLKDTQIGQLSNNITF-VSKA 201 (636)
T ss_dssp ---------------------------------------------CCC-------CCCCCCCTTTTTCCSCEEEE-ECGG
T ss_pred ---------------------------------------------ccc-------ccccchhhhhhccccCCCcc-CCHH
Confidence 000 00011111111 2355666 6777
Q ss_pred hhcCCCCcEEEccCCcCccc-----------------CCcccC--CCCCCCEEEcCCCCCCCCcccccccCCCCCccEEE
Q 036375 243 LVNISTLVYVDLSDCDLYGR-----------------IPIGFG--ELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILN 303 (1009)
Q Consensus 243 l~~l~~L~~L~L~~n~~~~~-----------------~p~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ 303 (1009)
++++++|++|+|++|.+.+. +|..++ ++++| ++|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L--------------------------~~L~ 255 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL--------------------------TDVE 255 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC--------------------------CEEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC--------------------------CEEE
Confidence 77888888888888877764 444444 44444 4444
Q ss_pred cccccccccCCccccCCCCCCEEEccCCc-ccc-cCchhhhcc------cCCCEEEcCCCcCCCCCCc--cccccccccC
Q 036375 304 FASNKLHGKLPSSVANMTSLTNFDLFDKK-VEG-GIPSSIARL------CYLKEFDLSGNNLTGSLPE--ILQGTDLCVS 373 (1009)
Q Consensus 304 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~~~~~~~~~~ 373 (1009)
+++|.+.+.+|..++++++|++|++++|. +++ .+|..++++ ++|++|++++|.++ .+|. .+.
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~------- 327 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ------- 327 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-------
T ss_pred ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-------
Confidence 44455677788888888888888888887 777 788877776 77777777777777 5555 555
Q ss_pred CCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCC-CcEEeCCCCcCCCCCCcccCCCC-
Q 036375 374 SNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKN-LTKLNLPGNQLNGTLPETLGSLP- 451 (1009)
Q Consensus 374 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~- 451 (1009)
.+++|++|++++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++
T Consensus 328 ---~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 328 ---KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp ---TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred ---cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 56677777777777776666 6667777777777777776 56666777777 777777777776 5666555433
Q ss_pred -CCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEE
Q 036375 452 -ELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLD 530 (1009)
Q Consensus 452 -~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 530 (1009)
+|++|++++|.+++.++.. +..+. .....+
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~-l~~~~-----------------------------------------~~~~~~------- 432 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKN-FDPLD-----------------------------------------PTPFKG------- 432 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCS-SCTTC-----------------------------------------SSCCCC-------
T ss_pred CccCEEECcCCcCCCcchhh-hcccc-----------------------------------------cccccC-------
Confidence 5666666666665443321 11000 000011
Q ss_pred ccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCC
Q 036375 531 FSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIP 610 (1009)
Q Consensus 531 ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip 610 (1009)
.+|+.|++++|.++ .+|
T Consensus 433 --------------------------------------------------------------~~L~~L~Ls~N~l~-~lp 449 (636)
T 4eco_A 433 --------------------------------------------------------------INVSSINLSNNQIS-KFP 449 (636)
T ss_dssp --------------------------------------------------------------CCEEEEECCSSCCC-SCC
T ss_pred --------------------------------------------------------------CCCCEEECcCCccC-cCC
Confidence 23444444444444 444
Q ss_pred chhhcCCCCccEEEccCCcccccCCccccc-------CCCCCeEEccCCcCCccCcCccc--CCCCCCEEECCCCcCccc
Q 036375 611 QNISGSMPNLIFLSVSGNRLTGKIPGSIGE-------MQLLQVIDLSRNSISGSISSSIG--NCTFLKVLDLSYSSLSGV 681 (1009)
Q Consensus 611 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ 681 (1009)
..++..+++|++|++++|+++...+..+.. +++|++|++++|+++ .+|..+. .+++|++|++++|++++
T Consensus 450 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp THHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred HHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-
Confidence 444444555555555555555222222221 225666666666665 4454554 56666666666666665
Q ss_pred CCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCC
Q 036375 682 IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSN 761 (1009)
Q Consensus 682 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~ 761 (1009)
+|..+..+++|++|++++|+ ++++|++.+.+|..+.. +++|+.|++++|++ +.+|..+.
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l-~~ip~~~~- 586 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITL-CPSLTQLQIGSNDI-RKVNEKIT- 586 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGG-CSSCCEEECCSSCC-CBCCSCCC-
T ss_pred cChhhhcCCCCCEEECCCCc------------------ccccCcccccChHHHhc-CCCCCEEECCCCcC-CccCHhHh-
Confidence 55555566666666664443 33556666666666653 67777777777777 46666554
Q ss_pred CCCCCEEEccCCcCCC
Q 036375 762 LSSLQVLDLAENNLTG 777 (1009)
Q Consensus 762 l~~L~~L~Ls~N~l~~ 777 (1009)
++|+.||+++|++..
T Consensus 587 -~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 587 -PNISVLDIKDNPNIS 601 (636)
T ss_dssp -TTCCEEECCSCTTCE
T ss_pred -CcCCEEECcCCCCcc
Confidence 677777777777664
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.7e-49 Score=481.45 Aligned_cols=190 Identities=16% Similarity=0.278 Sum_probs=105.4
Q ss_pred CCCCCCchhhhhcCCCCcEEEccCCcCcc-cCCcccCCCCCCCEEEcCCCCCCCCcccccccC--CCCCccEEEcccccc
Q 036375 233 NHFNSLFPNWLVNISTLVYVDLSDCDLYG-RIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRG--SWKKIQILNFASNKL 309 (1009)
Q Consensus 233 n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~--~~~~L~~L~l~~n~l 309 (1009)
|.+++ +|..++++++|++|+|++|++.+ .+|..+... +.| ...+.+|..++ .+++|++|++++|.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~--------s~n--~~~g~iP~~l~f~~L~~L~~L~Ls~N~l 503 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA--------NSD--YAKQYENEELSWSNLKDLTDVELYNCPN 503 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT--------TSH--HHHHHTTSCCCGGGCTTCCEEEEESCTT
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccc--------ccc--cccccCChhhhhccCCCCCEEECcCCCC
Confidence 55656 56667777777777777777765 222111100 000 01112222222 333333333334444
Q ss_pred cccCCccccCCCCCCEEEccCCc-ccc-cCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECc
Q 036375 310 HGKLPSSVANMTSLTNFDLFDKK-VEG-GIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLG 387 (1009)
Q Consensus 310 ~~~~p~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 387 (1009)
.+.+|..++++++|++|++++|. +++ .+|..+++++ ..+..+++|++|+++
T Consensus 504 ~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~---------------------------~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA---------------------------DDEDTGPKIQIFYMG 556 (876)
T ss_dssp CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH---------------------------HCTTTTTTCCEEECC
T ss_pred CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh---------------------------hcccccCCccEEEee
Confidence 44555555555555555555554 444 4454444433 011134566666666
Q ss_pred CCcCcccCCh--hhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCC-CCEEEccCcccc
Q 036375 388 NNHLKGKLPE--WLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPE-LSVLDVSSNSLT 464 (1009)
Q Consensus 388 ~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~ 464 (1009)
+|.++ .+|. .+.++++|++|++++|.++ .+| .|..+++|++|++++|.++ .+|..+..+++ |++|++++|.++
T Consensus 557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred CCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 66666 5665 6677777777777777766 556 6677777777777777776 66666666776 777777777766
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-46 Score=451.04 Aligned_cols=516 Identities=21% Similarity=0.236 Sum_probs=382.1
Q ss_pred EEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCC
Q 036375 302 LNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSL 381 (1009)
Q Consensus 302 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L 381 (1009)
++.++..+. .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..+..+. .+++|
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~----------~l~~L 78 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ----------SLSHL 78 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT----------TCTTC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc----------CchhC
Confidence 333333333 3444332 4677777777777766666777777777777777777766555555 57778
Q ss_pred cEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCC-CCCcccCCCCCCCEEEccC
Q 036375 382 ISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNG-TLPETLGSLPELSVLDVSS 460 (1009)
Q Consensus 382 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~ 460 (1009)
++|++++|.+++..|..|..+++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred CEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence 888888888777777778888888888888888876665568888888888888888876 3677788888888888888
Q ss_pred cccccccchhhhccCCCC----cEEeCCCCcccccCCCCCCCCccccEEecccCcCCC-CCCcccccCCCccEEEccCCc
Q 036375 461 NSLTGIISEIHFSRLSKL----KFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGP-SFPSWLKTQQGVSFLDFSNAS 535 (1009)
Q Consensus 461 n~l~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~ls~n~ 535 (1009)
|.+++..+. .+..+++| +++++++|.+.......+... +++++++++|.... .++..+..+
T Consensus 159 n~l~~~~~~-~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l------------ 224 (570)
T 2z63_A 159 NKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGL------------ 224 (570)
T ss_dssp SCCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTT------------
T ss_pred CccceecHH-HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCc------------
Confidence 888765443 46666666 677777777655444333222 44444444442211 122223333
Q ss_pred ccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCC-cCCCcCCchhh
Q 036375 536 ISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNN-HFSGPIPQNIS 614 (1009)
Q Consensus 536 i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n-~l~~~ip~~~~ 614 (1009)
+.++...+....+.... .+. .+....+.+.. -..++.++++++ .+.+.+|. .+
T Consensus 225 -------------~~l~~~~l~~~~~~~~~-------~l~--~~~~~~~~~l~---~l~l~~l~l~~~~~~~~~~~~-~~ 278 (570)
T 2z63_A 225 -------------AGLEVHRLVLGEFRNEG-------NLE--KFDKSALEGLC---NLTIEEFRLAYLDYYLDDIID-LF 278 (570)
T ss_dssp -------------TTCEEEEEEEEECCCCS-------SCE--ECCTTTTGGGG---GSEEEEEEEEETTEEESCSTT-TT
T ss_pred -------------cccceeeeccccccCch-------hhh--hcchhhhcccc---ccchhhhhhhcchhhhhhchh-hh
Confidence 33333333322221100 000 00001111000 023566777776 55555554 45
Q ss_pred cCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCE
Q 036375 615 GSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS 694 (1009)
Q Consensus 615 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 694 (1009)
..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++
T Consensus 279 ~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~ 351 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEF 351 (570)
T ss_dssp GGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCE
T ss_pred cCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCE
Confidence 67889999999999988 477778888 9999999999998 4554 4788999999999999877665 67899999
Q ss_pred EEccCccccCCC--chhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCC-cccCCCCCCCEEEcc
Q 036375 695 LHLNNNKLTGNL--PSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP-SKLSNLSSLQVLDLA 771 (1009)
Q Consensus 695 L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls 771 (1009)
|++++|++++.. |..+..+++|++|++++|.+.+ +|..+. .+++|+.|++++|.+.+..| ..+..+++|++|+++
T Consensus 352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred EeCcCCccCccccccccccccCccCEEECCCCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 999999998654 7889999999999999999985 444444 59999999999999997766 568899999999999
Q ss_pred CCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccC-CCCCccccCcC
Q 036375 772 ENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLH-GDFPTQLTKLV 850 (1009)
Q Consensus 772 ~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~-~~~p~~l~~l~ 850 (1009)
+|++++..|..+..+++| +.|+|++|.++ +.+|..++.++
T Consensus 430 ~n~l~~~~~~~~~~l~~L---------------------------------------~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSL---------------------------------------EVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp TSCCEECCTTTTTTCTTC---------------------------------------CEEECTTCEEGGGEECSCCTTCT
T ss_pred CCcccccchhhhhcCCcC---------------------------------------cEEECcCCcCccccchhhhhccc
Confidence 999999999888888877 89999999998 68999999999
Q ss_pred CCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCC
Q 036375 851 GLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG 918 (1009)
Q Consensus 851 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~ 918 (1009)
+|++|++++|++++.+|..|+++++|++|++++|++++.+|..+..+++|++|++++|+++|.+|...
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999998643
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.1e-46 Score=445.66 Aligned_cols=515 Identities=21% Similarity=0.206 Sum_probs=340.1
Q ss_pred EEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEccc
Q 036375 227 VLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFAS 306 (1009)
Q Consensus 227 ~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 306 (1009)
..+.++..++.. |..+ .+++++|++++|++.+..+..+.++++|++|++++|
T Consensus 11 ~~~c~~~~l~~i-p~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n------------------------- 62 (570)
T 2z63_A 11 TYQCMELNFYKI-PDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC------------------------- 62 (570)
T ss_dssp EEECCSSCCSSC-CSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-------------------------
T ss_pred EEEeCCCCcccc-CCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCC-------------------------
Confidence 445554444432 3322 135666666666666555555666666666666555
Q ss_pred ccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEEC
Q 036375 307 NKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRL 386 (1009)
Q Consensus 307 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 386 (1009)
.+.+..|..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..+. .+++|++|++
T Consensus 63 -~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~----------~l~~L~~L~L 131 (570)
T 2z63_A 63 -EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG----------HLKTLKELNV 131 (570)
T ss_dssp -CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCT----------TCTTCCEEEC
T ss_pred -cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccc----------ccccccEEec
Confidence 44544555666677777777777777666666677777777777777766654443343 5777777777
Q ss_pred cCCcCcc-cCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCC----cEEeCCCCcCCCCCCcccCCCCCCCEEEccCc
Q 036375 387 GNNHLKG-KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNL----TKLNLPGNQLNGTLPETLGSLPELSVLDVSSN 461 (1009)
Q Consensus 387 ~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 461 (1009)
++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+++| ++|++++|.+++..|..+... +|++|++++|
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence 7777765 357777788888888888888777767777777777 778888888876666666554 6888888877
Q ss_pred ccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCC--CccEEEccCC-cccC
Q 036375 462 SLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQ--GVSFLDFSNA-SISG 538 (1009)
Q Consensus 462 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~ls~n-~i~~ 538 (1009)
..........+..++.++...+....+... ..++. .....+..++ .++.++++++ .+.+
T Consensus 211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~ 272 (570)
T 2z63_A 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------GNLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLD 272 (570)
T ss_dssp CSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------SSCEE----------CCTTTTGGGGGSEEEEEEEEETTEEES
T ss_pred cccccchhhhhcCccccceeeeccccccCc--------hhhhh----------cchhhhccccccchhhhhhhcchhhhh
Confidence 544333334466677776655543222100 00000 0011111111 2445555555 4444
Q ss_pred CCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCC
Q 036375 539 PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMP 618 (1009)
Q Consensus 539 ~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~ 618 (1009)
.+|..+. .+++|+.+++++|.++ .+|..+ ..+
T Consensus 273 ~~~~~~~-~l~~L~~L~l~~~~l~---------------------------------------------~l~~~~-~~~- 304 (570)
T 2z63_A 273 DIIDLFN-CLTNVSSFSLVSVTIE---------------------------------------------RVKDFS-YNF- 304 (570)
T ss_dssp CSTTTTG-GGTTCSEEEEESCEEC---------------------------------------------SCCBCC-SCC-
T ss_pred hchhhhc-CcCcccEEEecCccch---------------------------------------------hhhhhh-ccC-
Confidence 4444443 2344444444444443 233322 223
Q ss_pred CccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccC--CccccCCCCCCEEE
Q 036375 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI--PASLGQLTRLQSLH 696 (1009)
Q Consensus 619 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~ 696 (1009)
+|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|+
T Consensus 305 ~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 305 GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence 5666666666555 2332 3456677777777776655543 56777777777777777553 56677777888888
Q ss_pred ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375 697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 776 (1009)
+++|++++..+ .+..+++|++|++++|.+.+..|...+..+++|+.|++++|.+.+..|..+..+++|++|++++|+++
T Consensus 380 l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 380 LSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp CCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc
Confidence 88887775433 37778888888888888776655433345788888888888888778888888888888888888887
Q ss_pred -CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeE
Q 036375 777 -GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL 855 (1009)
Q Consensus 777 -~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L 855 (1009)
+.+|..+..+++| +.|+|++|++++..|..++++++|++|
T Consensus 459 ~~~~p~~~~~l~~L---------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 459 ENFLPDIFTELRNL---------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp GGEECSCCTTCTTC---------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccchhhhhcccCC---------------------------------------CEEECCCCccccCChhhhhcccCCCEE
Confidence 5778777777766 788999999998889999999999999
Q ss_pred EccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcc
Q 036375 856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPS 892 (1009)
Q Consensus 856 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 892 (1009)
++++|++++.+|+.|.++++|+.|++++|.+++..|.
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999999999999999999999999988764
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-45 Score=441.16 Aligned_cols=485 Identities=20% Similarity=0.239 Sum_probs=313.8
Q ss_pred EEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCC
Q 036375 301 ILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPS 380 (1009)
Q Consensus 301 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~ 380 (1009)
+.+.+++.++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|.+++..|..+. .+++
T Consensus 9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----------~l~~ 75 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY----------SLGS 75 (549)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT----------TCTT
T ss_pred eEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc----------cccc
Confidence 3455555555 4444433 5666666666666655555566555555555555555544444433 4455
Q ss_pred CcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccc-cCCCCCCCCCCCcEEeCCCCcCCCCCC-cccCCCCCCCEEEc
Q 036375 381 LISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQG-PIPASLGNLKNLTKLNLPGNQLNGTLP-ETLGSLPELSVLDV 458 (1009)
Q Consensus 381 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L 458 (1009)
|++|++++|.+++..|..++.+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 5555555555554444445555555555555555443 123344444445555544444222222 23444444444444
Q ss_pred cCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccC
Q 036375 459 SSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG 538 (1009)
Q Consensus 459 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~ 538 (1009)
++|.+++. .|..+..+++|++|++++|.+.
T Consensus 156 ~~n~l~~~-------------------------------------------------~~~~l~~l~~L~~L~l~~n~~~- 185 (549)
T 2z81_A 156 KALSLRNY-------------------------------------------------QSQSLKSIRDIHHLTLHLSESA- 185 (549)
T ss_dssp EETTCCEE-------------------------------------------------CTTTTTTCSEEEEEEEECSBST-
T ss_pred cCCccccc-------------------------------------------------ChhhhhccccCceEecccCccc-
Confidence 44444433 3334444444555555555443
Q ss_pred CCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchh---hc
Q 036375 539 PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNI---SG 615 (1009)
Q Consensus 539 ~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~---~~ 615 (1009)
.+|.++...+++|++|++++|++++...... .+...+.+|+.|++++|.+.+..+..+ ..
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 248 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPL-----------------PVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCC-----------------SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG
T ss_pred ccchhhHhhcccccEEEccCCcccccccccc-----------------chhhhhhcccceeccccccchhHHHHHHHHhh
Confidence 3344444445666666666666654311100 001123556667777666655433322 24
Q ss_pred CCCCccEEEccCCcccccC------CcccccCCCCCeEEccCCcCCcc-----CcCcccCCCCCCEEECCCCcCcccCCc
Q 036375 616 SMPNLIFLSVSGNRLTGKI------PGSIGEMQLLQVIDLSRNSISGS-----ISSSIGNCTFLKVLDLSYSSLSGVIPA 684 (1009)
Q Consensus 616 ~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 684 (1009)
.+++|+.+++++|.+.+.. ...+..+++|+.|++.++.+... ++..+...++|+.|++++|++. .+|.
T Consensus 249 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~ 327 (549)
T 2z81_A 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPC 327 (549)
T ss_dssp GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCH
T ss_pred hhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCH
Confidence 5677788888887776532 12345677888888888876532 1222344578999999999987 5666
Q ss_pred cc-cCCCCCCEEEccCccccCCCch---hhcCCCCCCEEECcCCcccccCch--hhhhcCcCCcEEEccCCcccccCCcc
Q 036375 685 SL-GQLTRLQSLHLNNNKLTGNLPS---SFQNLTSLETLDLGNNRFSGNIPS--LLGNGFVGLRILSLRSNAFSGEIPSK 758 (1009)
Q Consensus 685 ~~-~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~ip~--~l~~~l~~L~~L~L~~N~l~~~~p~~ 758 (1009)
.+ ..+++|++|++++|++++.+|. .+..+++|++|++++|++++ +|. .....+++|+.|++++|+++ .+|..
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 405 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSC
T ss_pred HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCc-cCChh
Confidence 55 5789999999999999887643 37788999999999999984 432 22335999999999999998 68888
Q ss_pred cCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCcc
Q 036375 759 LSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNL 838 (1009)
Q Consensus 759 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l 838 (1009)
+..+++|++|++++|++++ +|..+. + .++.|||++|++
T Consensus 406 ~~~~~~L~~L~Ls~N~l~~-l~~~~~--~---------------------------------------~L~~L~Ls~N~l 443 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTGIRV-VKTCIP--Q---------------------------------------TLEVLDVSNNNL 443 (549)
T ss_dssp CCCCTTCCEEECTTSCCSC-CCTTSC--T---------------------------------------TCSEEECCSSCC
T ss_pred hcccccccEEECCCCCccc-ccchhc--C---------------------------------------CceEEECCCCCh
Confidence 9999999999999999874 333221 1 238999999999
Q ss_pred CCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCC
Q 036375 839 HGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF 916 (1009)
Q Consensus 839 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 916 (1009)
++.+ ..+++|++|+|++|+++ .+|+ ...+++|++|||++|++++.+|..++.+++|++|++++|+++|.+|.
T Consensus 444 ~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 444 DSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp SCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred hhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 9864 57899999999999999 5665 57899999999999999999999999999999999999999998884
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-46 Score=452.39 Aligned_cols=451 Identities=21% Similarity=0.289 Sum_probs=283.7
Q ss_pred CCccEEEcccccccccCCccccCCCCCCEEEccCCcc------cc------cCchhhhcccCCCEEEcCCCcCCCCCCcc
Q 036375 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKV------EG------GIPSSIARLCYLKEFDLSGNNLTGSLPEI 364 (1009)
Q Consensus 297 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~------~~------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 364 (1009)
.+++.|+++++.+.|.+|+.++++++|++|++++|.+ .+ .+|... +..|+ ++++.+.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 4677888888888888888888999999999988865 22 344443 45566 777777777666654
Q ss_pred cccc-------ccccCC--CCCCCCCcEEECc--CCcCcccCChhhcCCCCCCEEeCcCCccccc---------------
Q 036375 365 LQGT-------DLCVSS--NSPLPSLISMRLG--NNHLKGKLPEWLSQLENLVELTLSYNLLQGP--------------- 418 (1009)
Q Consensus 365 ~~~~-------~~~~~~--~~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--------------- 418 (1009)
+... ...... ......++.+.+. .|.+++ +|..++++++|++|+|++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 4310 000000 0011222222232 466776 777788888888888888887775
Q ss_pred --CCCCCC--CCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcc-ccc-ccchhhhccCCCCcEEeCCCCcccccC
Q 036375 419 --IPASLG--NLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNS-LTG-IISEIHFSRLSKLKFLGLSSNSFILNV 492 (1009)
Q Consensus 419 --~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~ 492 (1009)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|.. +..+..
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~--------------- 300 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALAD--------------- 300 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHH---------------
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhc---------------
Confidence 777777 77777777777777777777777777777777777776 665 44442 222200
Q ss_pred CCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCC
Q 036375 493 SSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIA 572 (1009)
Q Consensus 493 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~ 572 (1009)
+..+
T Consensus 301 ---------------------------~~~l------------------------------------------------- 304 (636)
T 4eco_A 301 ---------------------------APVG------------------------------------------------- 304 (636)
T ss_dssp ---------------------------SGGG-------------------------------------------------
T ss_pred ---------------------------cccC-------------------------------------------------
Confidence 0000
Q ss_pred CcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCc-hhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccC
Q 036375 573 PFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQ-NISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSR 651 (1009)
Q Consensus 573 ~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 651 (1009)
++|+.|++++|.++ .+|. ..+..+++|++|++++|+++|.+| .++.+++|++|++++
T Consensus 305 --------------------~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 305 --------------------EKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp --------------------GTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred --------------------CCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 12333333333333 3333 123345555555555555555555 555555555555555
Q ss_pred CcCCccCcCcccCCCC-CCEEECCCCcCcccCCccccCCC--CCCEEEccCccccCCCchhhc-------CCCCCCEEEC
Q 036375 652 NSISGSISSSIGNCTF-LKVLDLSYSSLSGVIPASLGQLT--RLQSLHLNNNKLTGNLPSSFQ-------NLTSLETLDL 721 (1009)
Q Consensus 652 N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~L 721 (1009)
|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|++|++++|++++.+|..+. .+++|++|++
T Consensus 363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 5555 45555555555 666666666655 4555554433 566666666666655555555 5556666666
Q ss_pred cCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCC--------CCCCCEEEccCCcCCCCCChhhh--hhhhhhh
Q 036375 722 GNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSN--------LSSLQVLDLAENNLTGSIPGSVG--DLKAMAH 791 (1009)
Q Consensus 722 ~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~ 791 (1009)
++|.++ .+|..++..+++|+.|++++|+++ .+|..... +++|++|++++|+++ .+|..+. .+++|
T Consensus 441 s~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L-- 515 (636)
T 4eco_A 441 SNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL-- 515 (636)
T ss_dssp CSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC--
T ss_pred cCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc--
Confidence 666665 555555544566666666666666 44433222 226777777777777 5666654 55555
Q ss_pred ccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEc------cCCccccc
Q 036375 792 VQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNL------SRNHIGGQ 865 (1009)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~ 865 (1009)
+.|+|++|++++ +|..+.++++|+.|+| ++|++.+.
T Consensus 516 -------------------------------------~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 516 -------------------------------------VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp -------------------------------------CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred -------------------------------------CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc
Confidence 677777777776 7777777777777777 56888889
Q ss_pred CCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceec
Q 036375 866 IPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGK 913 (1009)
Q Consensus 866 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 913 (1009)
+|..++++++|++|+|++|++ +.+|..+. ++|++||+++|++...
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred ChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 999999999999999999999 67888766 7899999999987643
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-44 Score=430.50 Aligned_cols=496 Identities=19% Similarity=0.182 Sum_probs=352.2
Q ss_pred CEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcC
Q 036375 274 QYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLS 353 (1009)
Q Consensus 274 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 353 (1009)
...+.+++.+ ..+|..+ .++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus 8 ~~c~~~~~~l---~~ip~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 8 GVCDGRSRSF---TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp SEEECTTSCC---SSCCSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEECCCCcc---ccccccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 3446665532 2334333 3799999999999999889999999999999999999999888999999999999999
Q ss_pred CCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcc-cCChhhcCCCCCCEEeCcCCcccccC-CCCCCCCCCCcE
Q 036375 354 GNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKG-KLPEWLSQLENLVELTLSYNLLQGPI-PASLGNLKNLTK 431 (1009)
Q Consensus 354 ~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~ 431 (1009)
+|.+++..|..+. .+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+ +..+.++++|++
T Consensus 83 ~n~l~~~~~~~~~----------~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 83 DNHLSSLSSSWFG----------PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp TSCCCSCCHHHHT----------TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCccCccCHHHhc----------cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 9999998888777 79999999999999986 35678999999999999999854444 468999999999
Q ss_pred EeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCc
Q 036375 432 LNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQ 511 (1009)
Q Consensus 432 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 511 (1009)
|++++|.+++..|..+..+++|++|+++.|.+.. ++...+..+++|++|++++|++......
T Consensus 153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------- 214 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFS----------------- 214 (549)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCC-----------------
T ss_pred eeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCcccccccc-----------------
Confidence 9999999999999999999999999999999864 4555567899999999999987542110
Q ss_pred CCCCCCcccccCCCccEEEccCCcccCCCCchhh---hccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCC
Q 036375 512 LGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFW---DISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPI 588 (1009)
Q Consensus 512 ~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~---~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~ 588 (1009)
.......+++|+.|++++|.+++..+..+. ..+++++.+++++|.+.+...... .....
T Consensus 215 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~--------------~~~~~ 276 (549)
T 2z81_A 215 ----PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP--------------SESDV 276 (549)
T ss_dssp ----CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC--------------CTTTC
T ss_pred ----ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc--------------cchhh
Confidence 011123456788888888887766554443 234567777777777665311100 00011
Q ss_pred CCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcc-cCCCC
Q 036375 589 PLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSI-GNCTF 667 (1009)
Q Consensus 589 ~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~ 667 (1009)
+..+.+++.|++.++.+..... + ...+..+...++|+.|++++|++. .+|..+ ..+++
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~---~-----------------~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~ 335 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYL---F-----------------YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKS 335 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGG---S-----------------CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTT
T ss_pred hhhhcccccccccccccchhhh---c-----------------ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCcc
Confidence 1223455555555554331100 0 011122233455666666666665 334333 45666
Q ss_pred CCEEECCCCcCcccCC---ccccCCCCCCEEEccCccccCCCc--hhhcCCCCCCEEECcCCcccccCchhhhhcCcCCc
Q 036375 668 LKVLDLSYSSLSGVIP---ASLGQLTRLQSLHLNNNKLTGNLP--SSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLR 742 (1009)
Q Consensus 668 L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~ 742 (1009)
|++|++++|++++.+| ..++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+. .+++|+
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~~~~L~ 413 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ-WPEKMR 413 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC-CCTTCC
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc-cccccc
Confidence 6666666666665543 235566666666666666664322 34666677777777777666 5666554 366777
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCC
Q 036375 743 ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSK 822 (1009)
Q Consensus 743 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1009)
.|++++|+++ .+|..+ .++|++||+++|++++.+ ..++.|
T Consensus 414 ~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L--------------------------------- 453 (549)
T 2z81_A 414 FLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRL--------------------------------- 453 (549)
T ss_dssp EEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTC---------------------------------
T ss_pred EEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChh---------------------------------
Confidence 7777777765 333333 257788888888877643 233333
Q ss_pred CCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCc
Q 036375 823 DTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIP 891 (1009)
Q Consensus 823 ~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 891 (1009)
+.|||++|+++ .+|. ...+++|++|+|++|++++.+|+.++.+++|+.|++++|.+++..|
T Consensus 454 ------~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 454 ------QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ------CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ------cEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 77888888887 5665 5678999999999999999999999999999999999999998877
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6e-42 Score=417.02 Aligned_cols=523 Identities=23% Similarity=0.229 Sum_probs=337.4
Q ss_pred CCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEE
Q 036375 224 SPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILN 303 (1009)
Q Consensus 224 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~ 303 (1009)
++++|||++|++++..|..|.++++|++|+|++|++.+..|.+|.++++|++|+|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~--------------------- 111 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--------------------- 111 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---------------------
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc---------------------
Confidence 45555555555555544555555555555555555544444444444444444444442
Q ss_pred cccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcE
Q 036375 304 FASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLIS 383 (1009)
Q Consensus 304 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 383 (1009)
+.+..+..|.++++|++|++++|.+++..+..|++ +++|++
T Consensus 112 -----l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~----------------------------------L~~L~~ 152 (635)
T 4g8a_A 112 -----IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH----------------------------------LKTLKE 152 (635)
T ss_dssp -----CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTT----------------------------------CTTCCE
T ss_pred -----CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhc----------------------------------CcccCe
Confidence 23223334455555555555555554433333444 555555
Q ss_pred EECcCCcCcc-cCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCC----cEEeCCCCcCCCCCCcccCCCCCCCEEEc
Q 036375 384 MRLGNNHLKG-KLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNL----TKLNLPGNQLNGTLPETLGSLPELSVLDV 458 (1009)
Q Consensus 384 L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 458 (1009)
|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+.++ ..++++.|.+....+. ......++.+++
T Consensus 153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l 231 (635)
T 4g8a_A 153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTL 231 (635)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEE
T ss_pred eccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhh
Confidence 5555555543 245566667777777777777766666655544333 3567777777644333 333445677777
Q ss_pred cCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccC
Q 036375 459 SSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISG 538 (1009)
Q Consensus 459 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~ 538 (1009)
.+|.....+....+..+..++...+..+...... .+.......+.....+...++..+....
T Consensus 232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~------------------~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG------------------NLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC------------------CCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred hcccccccccchhhcCCccccccccccccccccc------------------ccccccccccccccchhhhhhhhhhhcc
Confidence 7776655455555667777766555433221100 0001111112222222222222111110
Q ss_pred CCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCC
Q 036375 539 PIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMP 618 (1009)
Q Consensus 539 ~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~ 618 (1009)
... + ++. ......+++.+++.++.+.+. +. +....
T Consensus 294 ~~~---------------------~-~~~--------------------~~~~~~~l~~l~~~~~~~~~~-~~--~~~~~ 328 (635)
T 4g8a_A 294 YLD---------------------G-IID--------------------LFNCLTNVSSFSLVSVTIERV-KD--FSYNF 328 (635)
T ss_dssp CEE---------------------E-CTT--------------------TTGGGTTCSEEEEESCEEEEC-GG--GGSCC
T ss_pred ccc---------------------c-hhh--------------------hhhhhcccccccccccccccc-cc--cccch
Confidence 000 0 000 000123455555555554422 21 23456
Q ss_pred CccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcc--cCCccccCCCCCCEEE
Q 036375 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSG--VIPASLGQLTRLQSLH 696 (1009)
Q Consensus 619 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ 696 (1009)
.++.|++.+|.+.+..+. .+..|+.+++.+|.+... .....+++|+.|++++|.+.. ..+..+..+.+|+.++
T Consensus 329 ~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 403 (635)
T 4g8a_A 329 GWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD 403 (635)
T ss_dssp CCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEE
T ss_pred hhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhh
Confidence 778888888877755443 356788888888877643 234578889999999888853 3556667788899999
Q ss_pred ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375 697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 776 (1009)
+..|.... .+..+..+++|+.+++..|......+...+..+++++.++++.|.+.+..+..+..+++|+.|++++|++.
T Consensus 404 ~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 404 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp CCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred cccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence 99888774 45567888999999999888887777666667889999999999999888888899999999999999754
Q ss_pred -CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeE
Q 036375 777 -GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL 855 (1009)
Q Consensus 777 -~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L 855 (1009)
+.+|..+..+++| +.|||++|++++.+|..|+++++|++|
T Consensus 483 ~~~~~~~~~~l~~L---------------------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 483 ENFLPDIFTELRNL---------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp GGEECSCCTTCTTC---------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccCchhhhhcccc---------------------------------------CEEECCCCccCCcChHHHcCCCCCCEE
Confidence 4567777777766 889999999999999999999999999
Q ss_pred EccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCC-CCCCeEeCCCCcceecCC
Q 036375 856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSL-SFLGYINLSRNQLSGKIP 915 (1009)
Q Consensus 856 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~ip 915 (1009)
+|++|+|++.+|..|+++++|++|||++|+|++.+|+.+..+ ++|++|++++|++++...
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999999999999999999999999999988 689999999999987543
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=419.86 Aligned_cols=463 Identities=18% Similarity=0.192 Sum_probs=287.6
Q ss_pred CEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCC
Q 036375 324 TNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLE 403 (1009)
Q Consensus 324 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 403 (1009)
+++++++|.++ .+|..+. ++|++|++++|.+++..|..+. .+++|++|++++|.+++..|..|..++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~----------~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDIL----------SLSKLRILIISHNRIQYLDISVFKFNQ 69 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHT----------TCTTCCEEECCSSCCCEEEGGGGTTCT
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhcc----------ccccccEEecCCCccCCcChHHhhccc
Confidence 46777777777 4665554 6777777777777766666665 577777777777777766677777777
Q ss_pred CCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCC-CCCcccCCCCCCCEEEccCcccccccchhhhccCCCC--cE
Q 036375 404 NLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNG-TLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKL--KF 480 (1009)
Q Consensus 404 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~ 480 (1009)
+|++|++++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++
T Consensus 70 ~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 70 ELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISK 142 (520)
T ss_dssp TCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEE
T ss_pred CCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeE
Confidence 7777777777777 34444 67777777777777765 356677777777777777777664 135555555 66
Q ss_pred EeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCC-CccEEEccCCcccCCCCchhhhccCcccEEEeccc
Q 036375 481 LGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQ-GVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLN 559 (1009)
Q Consensus 481 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n 559 (1009)
|++++|.+.. .+..|..+..+. ....+++++|.+.+.++......+++|+.+++++|
T Consensus 143 L~l~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 200 (520)
T 2z7x_B 143 VLLVLGETYG----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200 (520)
T ss_dssp EEEEECTTTT----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred EEeecccccc----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence 6665554410 223333333332 22234455555555444444334444444444444
Q ss_pred cccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccc
Q 036375 560 QLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG 639 (1009)
Q Consensus 560 ~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 639 (1009)
.-..... .+.+.+| .+..+++|+.|++++|.+++..+..+.
T Consensus 201 ~~~~~~~-------------------------------------~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 201 LEDNKCS-------------------------------------YFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp CSTTTTH-------------------------------------HHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ccccccc-------------------------------------eeecchh--hhccccchhhccccccccCHHHHHHHH
Confidence 3000000 0222222 223455555555555555432211111
Q ss_pred ---cCCCCCeEEccCCcCCccCcCcc-----cCCCCCCEEECCCCcCcccCC-ccccCC---CCCCEEEccCccccCCCc
Q 036375 640 ---EMQLLQVIDLSRNSISGSISSSI-----GNCTFLKVLDLSYSSLSGVIP-ASLGQL---TRLQSLHLNNNKLTGNLP 707 (1009)
Q Consensus 640 ---~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p 707 (1009)
..++|++|++++|+++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+....
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~- 318 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML- 318 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-
Confidence 13456666666666666666665 6666666666666666 333 333333 45666666666665321
Q ss_pred hhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccc--cCCcccCCCCCCCEEEccCCcCCCCCChh-hh
Q 036375 708 SSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG--EIPSKLSNLSSLQVLDLAENNLTGSIPGS-VG 784 (1009)
Q Consensus 708 ~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~ 784 (1009)
.+..+++|++|++++|++++.+|..+. .+++|+.|++++|++++ .+|..+..+++|++|++++|++++.+|.. +.
T Consensus 319 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 319 -CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp -CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred -chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 124566677777777777666666554 36677777777777665 45566677777777777777777655543 44
Q ss_pred hhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccc
Q 036375 785 DLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGG 864 (1009)
Q Consensus 785 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 864 (1009)
.++.| +.|+|++|++++.+|..+. ++|+.|+|++|+++
T Consensus 397 ~l~~L---------------------------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~- 434 (520)
T 2z7x_B 397 WTKSL---------------------------------------LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK- 434 (520)
T ss_dssp CCTTC---------------------------------------CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-
T ss_pred cCccC---------------------------------------CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-
Confidence 44443 6777777777777776664 67888889988888
Q ss_pred cCCCCccCCCCCCEEeCCCCcCCCCCccc-ccCCCCCCeEeCCCCcceecCC
Q 036375 865 QIPENISGLHQLASLDLSSNNLSGGIPSS-LSSLSFLGYINLSRNQLSGKIP 915 (1009)
Q Consensus 865 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip 915 (1009)
.+|..+..+++|++|++++|++++ +|.. +..+++|++|++++|++++.+|
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 677777788999999999999985 5554 8888999999999999988765
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-43 Score=428.95 Aligned_cols=459 Identities=19% Similarity=0.265 Sum_probs=247.6
Q ss_pred CCccEEEcccccccccCCccccCCCCCCEEEc-cCCcccccCchhhhcc---------cCCCE------EE-cCCCcCCC
Q 036375 297 KKIQILNFASNKLHGKLPSSVANMTSLTNFDL-FDKKVEGGIPSSIARL---------CYLKE------FD-LSGNNLTG 359 (1009)
Q Consensus 297 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l-~~n~~~~~~~~~l~~l---------~~L~~------L~-l~~n~l~~ 359 (1009)
.+++.|+|+++.+.|.+|+.++++++|++|++ ++|.+.|..|...... ..++. ++ .....+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57888888888888888888888888888888 7777776633211000 00000 00 00000000
Q ss_pred CCCcccccc-ccccCCCCCCCCCcEEECcC--CcCcccCChhhcCCCCCCEEeCcCCcccc-----------------cC
Q 036375 360 SLPEILQGT-DLCVSSNSPLPSLISMRLGN--NHLKGKLPEWLSQLENLVELTLSYNLLQG-----------------PI 419 (1009)
Q Consensus 360 ~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-----------------~~ 419 (1009)
..+..+... ............++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 000000000 00000001222344444443 77776 78888888888888888888887 37
Q ss_pred CCCCC--CCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcc-ccc-ccchhhhccCCCCcEEeCCCCcccccCCCC
Q 036375 420 PASLG--NLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNS-LTG-IISEIHFSRLSKLKFLGLSSNSFILNVSSS 495 (1009)
Q Consensus 420 p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 495 (1009)
|..++ ++++|++|+|++|.+.+.+|..+.++++|++|++++|+ +++ .+|.. +..++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~------------------- 541 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLA------------------- 541 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHH-------------------
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhh-------------------
Confidence 77766 78888888888888777788778888888888888887 766 55542 33222
Q ss_pred CCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCc--hhhhccCcccEEEeccccccccCCCCCCCCC
Q 036375 496 WIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPN--WFWDISSKLSLLNVSLNQLQGQLPNPLNIAP 573 (1009)
Q Consensus 496 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~--~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 573 (1009)
..+..+++|+.|++++|+++ .+|. .+. .+
T Consensus 542 ----------------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L------------------------- 572 (876)
T 4ecn_A 542 ----------------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KM------------------------- 572 (876)
T ss_dssp ----------------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TC-------------------------
T ss_pred ----------------------hcccccCCccEEEeeCCcCC-ccCChhhhh-cC-------------------------
Confidence 00122234444444444444 3443 222 11
Q ss_pred cCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCC-CCeEEccCC
Q 036375 574 FADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQL-LQVIDLSRN 652 (1009)
Q Consensus 574 l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N 652 (1009)
++|+.|++++|.++ .+| .+..+++|++|++++|+++ .+|..+.++++ |+.|++++|
T Consensus 573 -------------------~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 573 -------------------VKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp -------------------TTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred -------------------CCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 23333333444333 344 2334555555555555555 45555555665 666666666
Q ss_pred cCCccCcCcccCCCC--CCEEECCCCcCcccCCccc---c--CCCCCCEEEccCccccCCCchh-hcCCCCCCEEECcCC
Q 036375 653 SISGSISSSIGNCTF--LKVLDLSYSSLSGVIPASL---G--QLTRLQSLHLNNNKLTGNLPSS-FQNLTSLETLDLGNN 724 (1009)
Q Consensus 653 ~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N 724 (1009)
+++ .+|..+..++. |+.|++++|++.+.+|... . .+++|+.|++++|+++ .+|.. +..+++|+.|+|++|
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC
Confidence 665 45555555433 6666666666665544221 1 2235566666666665 23333 335556666666666
Q ss_pred cccccCchhhhhcC-------cCCcEEEccCCcccccCCcccC--CCCCCCEEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375 725 RFSGNIPSLLGNGF-------VGLRILSLRSNAFSGEIPSKLS--NLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI 795 (1009)
Q Consensus 725 ~l~~~ip~~l~~~l-------~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 795 (1009)
+++ .+|..++... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|
T Consensus 708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L------ 778 (876)
T 4ecn_A 708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL------ 778 (876)
T ss_dssp CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC------
T ss_pred cCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC------
Confidence 555 5555443211 14455555555444 4444443 44445555555444444 34444444433
Q ss_pred hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCC
Q 036375 796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ 875 (1009)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 875 (1009)
+.|+|++|+ ++++|++.+.+|..|.++++
T Consensus 779 ---------------------------------~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 779 ---------------------------------KAFGIRHQR------------------DAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp ---------------------------------CEEECCCCB------------------CTTCCBCCCCCCTTGGGCSS
T ss_pred ---------------------------------CEEECCCCC------------------CcccccccccChHHHhcCCC
Confidence 344443322 12336666777777777777
Q ss_pred CCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceec
Q 036375 876 LASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGK 913 (1009)
Q Consensus 876 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 913 (1009)
|+.|+|++|++ +.+|..+. ++|++||+++|++...
T Consensus 808 L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 808 LIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred CCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 77777777777 56666654 4677777777766543
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.9e-44 Score=422.12 Aligned_cols=455 Identities=21% Similarity=0.212 Sum_probs=340.1
Q ss_pred CEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCC
Q 036375 348 KEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLK 427 (1009)
Q Consensus 348 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 427 (1009)
++|++++|.++. +|..+ .++|++|++++|.+++..|..+..+++|++|++++|++++..|..|++++
T Consensus 3 ~~l~ls~n~l~~-ip~~~------------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDL------------SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ 69 (520)
T ss_dssp CEEECTTSCCSS-CCCSC------------CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT
T ss_pred ceEecCCCCccc-ccccc------------cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc
Confidence 467777777763 44322 25677777777777766666677777777777777777766666777777
Q ss_pred CCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEec
Q 036375 428 NLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNM 507 (1009)
Q Consensus 428 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 507 (1009)
+|++|++++|+++ .+|.. .+++|++|++++|.+++...+..++.+++|++|++++|.+..
T Consensus 70 ~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----------------- 129 (520)
T 2z7x_B 70 ELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----------------- 129 (520)
T ss_dssp TCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----------------
T ss_pred CCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----------------
Confidence 7777777777776 44544 567777777777776653211235566666666665554321
Q ss_pred ccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcc--cEEEeccccc--cccCCCCCCCCCcCeEeccCCC
Q 036375 508 RSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKL--SLLNVSLNQL--QGQLPNPLNIAPFADVDFRSNL 583 (1009)
Q Consensus 508 ~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L--~~L~ls~n~l--~~~~~~~~~~~~l~~l~l~~n~ 583 (1009)
..+.. +++| +.|++++|.+ .+..|..+....
T Consensus 130 ----------~~~~~-------------------------l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~---------- 164 (520)
T 2z7x_B 130 ----------SSVLP-------------------------IAHLNISKVLLVLGETYGEKEDPEGLQDFN---------- 164 (520)
T ss_dssp ----------GGGGG-------------------------GTTSCEEEEEEEECTTTTSSCCTTTTTTCC----------
T ss_pred ----------hhccc-------------------------cccceeeEEEeecccccccccccccccccc----------
Confidence 11222 2334 5555555555 333333221100
Q ss_pred CCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCc-------ccccCCcccccCCCCCeEEccCCcCCc
Q 036375 584 LEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNR-------LTGKIPGSIGEMQLLQVIDLSRNSISG 656 (1009)
Q Consensus 584 l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 656 (1009)
.+...+++++|.+.+.++...+..+++|+.+++++|. +.+.+| .+..+++|+.|++++|.+++
T Consensus 165 ---------~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 165 ---------TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp ---------EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEH
T ss_pred ---------cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCH
Confidence 0233567788888888888888889999999999997 666666 78899999999999998876
Q ss_pred cCcCccc---CCCCCCEEECCCCcCcccCCccc-----cCCCCCCEEEccCccccCCCc-hhhcCC---CCCCEEECcCC
Q 036375 657 SISSSIG---NCTFLKVLDLSYSSLSGVIPASL-----GQLTRLQSLHLNNNKLTGNLP-SSFQNL---TSLETLDLGNN 724 (1009)
Q Consensus 657 ~~p~~l~---~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~L~~N 724 (1009)
..+..+. .+++|++|++++|+++|.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 4332221 24699999999999999999988 8999999999999999 455 555554 78999999999
Q ss_pred cccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCC--CCChhhhhhhhhhhccchhhhhhcc
Q 036375 725 RFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG--SIPGSVGDLKAMAHVQNIVKYLLFG 802 (1009)
Q Consensus 725 ~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~~~~~~~~~~~~ 802 (1009)
.+.+ ++. ...+++|+.|++++|++++.+|..+..+++|++|++++|++++ .+|..++.+++|
T Consensus 313 ~l~~-~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L------------- 376 (520)
T 2z7x_B 313 RMVH-MLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL------------- 376 (520)
T ss_dssp CCCC-CCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-------------
T ss_pred cccc-ccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-------------
Confidence 9874 331 1258999999999999999899999999999999999999997 566777777776
Q ss_pred ccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcc-ccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeC
Q 036375 803 RYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ-LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL 881 (1009)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 881 (1009)
+.|||++|++++.+|.. +..+++|++|++++|++++.+|..+. ++|++||+
T Consensus 377 --------------------------~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~L 428 (520)
T 2z7x_B 377 --------------------------QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL 428 (520)
T ss_dssp --------------------------CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred --------------------------CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence 89999999999977764 88999999999999999999888776 79999999
Q ss_pred CCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC--CCCCcccCCcCCCCCCCCCCC
Q 036375 882 SSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE--GHMTTFDASSFAGNPGLCGDP 938 (1009)
Q Consensus 882 s~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~~~~~n~~lc~~~ 938 (1009)
++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+..+....+.+||..|.++
T Consensus 429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 429 HSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999 78888889999999999999999 46653 344556666789999888653
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-41 Score=412.16 Aligned_cols=527 Identities=20% Similarity=0.194 Sum_probs=384.3
Q ss_pred cCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcC
Q 036375 312 KLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHL 391 (1009)
Q Consensus 312 ~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 391 (1009)
.+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..|..|. .+++|++|+|++|++
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~----------~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ----------SLSHLSTLILTGNPI 112 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----------TCTTCCEEECTTCCC
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc----------CCCCCCEEEccCCcC
Confidence 4554442 4677888888887766667777888888888888877766666665 678888888888888
Q ss_pred cccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCC-CCcccCCCCCCCEEEccCcccccccchh
Q 036375 392 KGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGT-LPETLGSLPELSVLDVSSNSLTGIISEI 470 (1009)
Q Consensus 392 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 470 (1009)
++..+.+|.++++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|++++..+.
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~- 191 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT- 191 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc-
Confidence 876667788888889999988888877777788888999999988888753 567778888899999998888865443
Q ss_pred hhccCCCC----cEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhh
Q 036375 471 HFSRLSKL----KFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWD 546 (1009)
Q Consensus 471 ~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~ 546 (1009)
.+..+.++ ..++++.|.+.......+ ....+..+++++|.....++.....
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-------------------------~~~~~~~l~l~~n~~~~~~~~~~~~ 246 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-------------------------KEIRLHKLTLRNNFDSLNVMKTCIQ 246 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTT-------------------------TTCEEEEEEEESCCSSHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccc-------------------------cchhhhhhhhhcccccccccchhhc
Confidence 35544433 356666665543222211 2223455566665544444333333
Q ss_pred ccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcC--CchhhcCCCCccEEE
Q 036375 547 ISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPI--PQNISGSMPNLIFLS 624 (1009)
Q Consensus 547 ~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~i--p~~~~~~l~~L~~L~ 624 (1009)
.+..++...+..+...+...-.. . ..........+...++..+...... ....+....+++.++
T Consensus 247 ~l~~l~~~~l~~~~~~~~~~l~~-------~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 312 (635)
T 4g8a_A 247 GLAGLEVHRLVLGEFRNEGNLEK-------F-------DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS 312 (635)
T ss_dssp TTTTCEEEEEEEECCTTSCCCSC-------C-------CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred CCccccccccccccccccccccc-------c-------cccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence 44555555544333221110000 0 0000001123333333333222111 112344577899999
Q ss_pred ccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCcccc-
Q 036375 625 VSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLT- 703 (1009)
Q Consensus 625 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~- 703 (1009)
+.++.+.... .+.....|+.|++.+|.+.+..+. .+..|+.+++..|.+.... ....+++|+.|++++|.+.
T Consensus 313 ~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 385 (635)
T 4g8a_A 313 LVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSF 385 (635)
T ss_dssp EESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBE
T ss_pred cccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhcccccc
Confidence 9999887554 355678899999999998865443 4678999999999887543 3557899999999999986
Q ss_pred -CCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCCCCCh
Q 036375 704 -GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP-SKLSNLSSLQVLDLAENNLTGSIPG 781 (1009)
Q Consensus 704 -~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~ 781 (1009)
+..+..+..+.+|+.+++..|...+ ++..+. .+++|+.+++.+|......+ ..+..+++++.+++++|++.+..|.
T Consensus 386 ~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~ 463 (635)
T 4g8a_A 386 KGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463 (635)
T ss_dssp EEECCHHHHSCSCCCEEECCSCSEEE-ECSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred ccccccchhhhhhhhhhhcccccccc-cccccc-ccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence 4466778889999999999999874 444444 48999999999998876554 4578899999999999999999888
Q ss_pred hhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCcc-CCCCCccccCcCCCCeEEccCC
Q 036375 782 SVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNL-HGDFPTQLTKLVGLVVLNLSRN 860 (1009)
Q Consensus 782 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l-~~~~p~~l~~l~~L~~L~Ls~N 860 (1009)
.+..++.+ +.|+|++|++ .+.+|..|..+++|++|+|++|
T Consensus 464 ~~~~~~~L---------------------------------------~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N 504 (635)
T 4g8a_A 464 IFNGLSSL---------------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504 (635)
T ss_dssp TTTTCTTC---------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ccccchhh---------------------------------------hhhhhhhcccccccCchhhhhccccCEEECCCC
Confidence 88777766 8899999985 4567889999999999999999
Q ss_pred cccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCC-CC-CcccCCcCCCCCCCCCCC
Q 036375 861 HIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEG-HM-TTFDASSFAGNPGLCGDP 938 (1009)
Q Consensus 861 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~-~~-~~~~~~~~~~n~~lc~~~ 938 (1009)
++++.+|..|+++++|++|+|++|+|++.+|..|+.+++|++||+++|+|++.+|..- .+ .++....+.+||+-|.+.
T Consensus 505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999988642 22 456666789999999653
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.6e-41 Score=399.21 Aligned_cols=458 Identities=21% Similarity=0.240 Sum_probs=277.6
Q ss_pred CCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcC
Q 036375 322 SLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQ 401 (1009)
Q Consensus 322 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 401 (1009)
..+++++++|.+++ +|..+. ++|++|++++|.+++..|..+. .+++|++|++++|.+++..|..|..
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~----------~l~~L~~L~Ls~N~l~~~~~~~~~~ 98 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDIS----------FLSELRVLRLSHNRIRSLDFHVFLF 98 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTT----------TCTTCCEEECCSCCCCEECTTTTTT
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhc----------cCCCccEEECCCCCCCcCCHHHhCC
Confidence 34667777666663 554432 5666666666666655554444 4556666666666666555555666
Q ss_pred CCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCC-CCcccCCCCCCCEEEccCcccccccchhhhccCCCC--
Q 036375 402 LENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGT-LPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKL-- 478 (1009)
Q Consensus 402 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L-- 478 (1009)
+++|++|++++|.++ .+|.. .+++|++|++++|.+++. +|..++++++|++|++++|.+++. .+..+++|
T Consensus 99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L 171 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHL 171 (562)
T ss_dssp CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCE
T ss_pred CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhcee
Confidence 666666666666655 33333 556666666666665542 334555566666666666555431 23333333
Q ss_pred cEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCC-CccEEEccCCcccCCCCchhhhccCcccEEEec
Q 036375 479 KFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQ-GVSFLDFSNASISGPIPNWFWDISSKLSLLNVS 557 (1009)
Q Consensus 479 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls 557 (1009)
++|++++|.+.. .+..|..+..+. ....+++++|.+.+.++......+++|+.++++
T Consensus 172 ~~L~L~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 229 (562)
T 3a79_B 172 SCILLDLVSYHI----------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229 (562)
T ss_dssp EEEEEEESSCCC----------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEE
T ss_pred eEEEeecccccc----------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccc
Confidence 555554444300 444555555543 122456677777766666665566677777777
Q ss_pred ccc-----ccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCc----CCchhhcCCCCccEEEccCC
Q 036375 558 LNQ-----LQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGP----IPQNISGSMPNLIFLSVSGN 628 (1009)
Q Consensus 558 ~n~-----l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~----ip~~~~~~l~~L~~L~Ls~n 628 (1009)
+|+ +.+.++.... .++++.+++.++.+.+. ++... ..++|++|++++|
T Consensus 230 ~n~~~~~~l~~~~~~l~~---------------------l~~L~~L~L~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n 286 (562)
T 3a79_B 230 LNDENCQRLMTFLSELTR---------------------GPTLLNVTLQHIETTWKCSVKLFQFF--WPRPVEYLNIYNL 286 (562)
T ss_dssp CCSTTHHHHHHHHHHHHS---------------------CSSCEEEEEEEEEECHHHHHHHHHHH--TTSSEEEEEEEEE
T ss_pred ccccccchHHHHHHHHhc---------------------cCcceEEEecCCcCcHHHHHHHHHhh--hcccccEEEEecc
Confidence 764 1111111111 23445555555444322 11111 2347777777777
Q ss_pred cccccCCccc-----ccCCCCCeEEccCCcCCccCc-CcccC---CCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 036375 629 RLTGKIPGSI-----GEMQLLQVIDLSRNSISGSIS-SSIGN---CTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699 (1009)
Q Consensus 629 ~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~p-~~l~~---l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 699 (1009)
.+++.+|..+ ..++.|+.+++..|.+ .+| ..+.. ..+|++|++++|.+.... ....+++|++|++++
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred Eeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCC
Confidence 7777777665 5556666666666665 233 22221 256888888888876332 125778888888888
Q ss_pred ccccCCCchhhcCCCCCCEEECcCCcccc--cCchhhhhcCcCCcEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCC
Q 036375 700 NKLTGNLPSSFQNLTSLETLDLGNNRFSG--NIPSLLGNGFVGLRILSLRSNAFSGEIPS-KLSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 700 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~ip~~l~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~ 776 (1009)
|++++..|..+..+++|++|++++|++++ .+|..+. .+++|+.|++++|++++.+|. .+..+++|++|++++|+++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence 88888888888888888888888888874 2233444 588899999999998875665 4777888888888888877
Q ss_pred CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEE
Q 036375 777 GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLN 856 (1009)
Q Consensus 777 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 856 (1009)
+.+|..+ . ++|+.|+
T Consensus 442 ~~~~~~l---------------------------------------------------------------~--~~L~~L~ 456 (562)
T 3a79_B 442 GSVFRCL---------------------------------------------------------------P--PKVKVLD 456 (562)
T ss_dssp GGGGSSC---------------------------------------------------------------C--TTCSEEE
T ss_pred cchhhhh---------------------------------------------------------------c--CcCCEEE
Confidence 5444221 1 3566677
Q ss_pred ccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCccc-ccCCCCCCeEeCCCCcceecCCC
Q 036375 857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSS-LSSLSFLGYINLSRNQLSGKIPF 916 (1009)
Q Consensus 857 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~ 916 (1009)
|++|+++ .+|..+.++++|++|+|++|++++ +|.. +..+++|++|++++|+++|.+|.
T Consensus 457 L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 457 LHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 7777776 455555577777777777777774 4444 77777888888888887776653
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-40 Score=396.75 Aligned_cols=461 Identities=20% Similarity=0.200 Sum_probs=327.5
Q ss_pred cccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCC
Q 036375 343 RLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPAS 422 (1009)
Q Consensus 343 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 422 (1009)
.+...+++++++|.+++ +|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~------------~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 95 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDL------------PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV 95 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTS------------CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT
T ss_pred ccCCCcEEEcCCCCCcc-CCCCC------------CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH
Confidence 34455788888888775 44322 257888888888887766677788888888888888888777777
Q ss_pred CCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccc
Q 036375 423 LGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQV 502 (1009)
Q Consensus 423 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 502 (1009)
|.++++|++|++++|.++ .+|.. .+++|++|++++|.+++......|.++++|++|++++|.+..
T Consensus 96 ~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~------------ 160 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ------------ 160 (562)
T ss_dssp TTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT------------
T ss_pred hCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc------------
Confidence 888888888888888877 45554 677888888888877753322346777777777777665421
Q ss_pred cEEecccCcCCCCCCcccccCCCccEEEccCCcc--cCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEecc
Q 036375 503 QSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASI--SGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFR 580 (1009)
Q Consensus 503 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i--~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~ 580 (1009)
.....+..+ +|++|++++|.+ ++..|..+.....
T Consensus 161 ------------~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~------------------------------- 196 (562)
T 3a79_B 161 ------------LDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNT------------------------------- 196 (562)
T ss_dssp ------------TTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCE-------------------------------
T ss_pred ------------Cchhhhhhc-eeeEEEeecccccccccCcccccccCc-------------------------------
Confidence 001111112 235555555555 4444443321100
Q ss_pred CCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCc-----ccccCCcccccCCCCCeEEccCCcCC
Q 036375 581 SNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNR-----LTGKIPGSIGEMQLLQVIDLSRNSIS 655 (1009)
Q Consensus 581 ~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~N~l~ 655 (1009)
..-.+++++|.+.+.++...+..+++|+.+++++|+ +.+. ...+.++++|+.|++.++.+.
T Consensus 197 -------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 197 -------------TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp -------------EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEEC
T ss_pred -------------ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCc
Confidence 011345666666666666666677778888888774 2222 235667788888888877765
Q ss_pred ccC----cCcccCCCCCCEEECCCCcCcccCCccc-----cCCCCCCEEEccCccccCCCc-hhhcC---CCCCCEEECc
Q 036375 656 GSI----SSSIGNCTFLKVLDLSYSSLSGVIPASL-----GQLTRLQSLHLNNNKLTGNLP-SSFQN---LTSLETLDLG 722 (1009)
Q Consensus 656 ~~~----p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~---l~~L~~L~L~ 722 (1009)
+.. +..+ ..++|++|++++|+++|.+|..+ ..++.|+.++++.|.+ .+| ..+.. ..+|++|+++
T Consensus 263 ~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 263 WKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp HHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEE
T ss_pred HHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEcc
Confidence 421 1112 23489999999999988888877 6677777777777776 344 33322 3679999999
Q ss_pred CCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCC--CChhhhhhhhhhhccchhhhhh
Q 036375 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS--IPGSVGDLKAMAHVQNIVKYLL 800 (1009)
Q Consensus 723 ~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~~~~~~~~~~ 800 (1009)
+|.+.. ++. ...+++|+.|++++|++++.+|..+..+++|++|++++|++++. +|..++++++|
T Consensus 340 ~n~~~~-~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L----------- 405 (562)
T 3a79_B 340 DTPFIH-MVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL----------- 405 (562)
T ss_dssp SSCCCC-CCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-----------
T ss_pred CCCccc-ccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-----------
Confidence 998863 221 12589999999999999998999999999999999999999973 34566676666
Q ss_pred ccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCc-cccCcCCCCeEEccCCcccccCCCCccCCCCCCEE
Q 036375 801 FGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPT-QLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASL 879 (1009)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 879 (1009)
+.|+|++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|++|
T Consensus 406 ----------------------------~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L 455 (562)
T 3a79_B 406 ----------------------------ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVL 455 (562)
T ss_dssp ----------------------------CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEE
T ss_pred ----------------------------CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEE
Confidence 8999999999996665 588999999999999999998888776 799999
Q ss_pred eCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC--CCCCcccCCcCCCCCCCCCCC
Q 036375 880 DLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE--GHMTTFDASSFAGNPGLCGDP 938 (1009)
Q Consensus 880 ~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~~~~~~~~~n~~lc~~~ 938 (1009)
+|++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+..+....+.+||+-|.++
T Consensus 456 ~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 456 DLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp ECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred ECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 99999999 68887789999999999999999 46653 345556667789999998653
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.7e-38 Score=367.63 Aligned_cols=386 Identities=22% Similarity=0.241 Sum_probs=267.5
Q ss_pred cEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCC-CcccCCCCCCCEEEccC
Q 036375 382 ISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTL-PETLGSLPELSVLDVSS 460 (1009)
Q Consensus 382 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~ 460 (1009)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666666665 3444 2 256777777777777666667777777777777777665444 34566666677777766
Q ss_pred cccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCC
Q 036375 461 NSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPI 540 (1009)
Q Consensus 461 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~ 540 (1009)
|.+++..+. .+.++++|++|++++|. +++.+
T Consensus 89 n~l~~~~~~-~~~~l~~L~~L~L~~n~------------------------------------------------l~~~~ 119 (455)
T 3v47_A 89 NQFLQLETG-AFNGLANLEVLTLTQCN------------------------------------------------LDGAV 119 (455)
T ss_dssp CTTCEECTT-TTTTCTTCCEEECTTSC------------------------------------------------CBTHH
T ss_pred CccCccChh-hccCcccCCEEeCCCCC------------------------------------------------CCccc
Confidence 666544333 24444444444444443 33211
Q ss_pred Cch-hhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCC
Q 036375 541 PNW-FWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPN 619 (1009)
Q Consensus 541 p~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~ 619 (1009)
+.. .. ..+++|++|++++|.+.+..|..++..+++
T Consensus 120 ~~~~~~--------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 120 LSGNFF--------------------------------------------KPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp HHSSTT--------------------------------------------TTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred cCcccc--------------------------------------------cCcccCCEEECCCCccCccCcccccCCCCc
Confidence 111 00 012345555555555554555554556666
Q ss_pred ccEEEccCCcccccCCcccccC--CCCCeEEccCCcCCccCcCc--------ccCCCCCCEEECCCCcCcccCCccccCC
Q 036375 620 LIFLSVSGNRLTGKIPGSIGEM--QLLQVIDLSRNSISGSISSS--------IGNCTFLKVLDLSYSSLSGVIPASLGQL 689 (1009)
Q Consensus 620 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~--------l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 689 (1009)
|++|++++|++++..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++++..|..+...
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 7777777777666666666555 56667777777766544332 2245667777777777776666655443
Q ss_pred ---CCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhh-hcCcCCcEEEccCCcccccCCcccCCCCCC
Q 036375 690 ---TRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG-NGFVGLRILSLRSNAFSGEIPSKLSNLSSL 765 (1009)
Q Consensus 690 ---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 765 (1009)
++|+.|++++|.+.+... ..+.+.+..+..+. ...++|+.|++++|.+++..|..+..+++|
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 301 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred ccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC
Confidence 667777777766553211 11111111111111 124789999999999999999999999999
Q ss_pred CEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcc
Q 036375 766 QVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ 845 (1009)
Q Consensus 766 ~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~ 845 (1009)
++|++++|++++..|..+.++++| +.|+|++|.+++..|..
T Consensus 302 ~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------------~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 302 EQLTLAQNEINKIDDNAFWGLTHL---------------------------------------LKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTC---------------------------------------CEEECCSSCCCEECGGG
T ss_pred CEEECCCCcccccChhHhcCcccC---------------------------------------CEEECCCCccCCcChhH
Confidence 999999999999889888888877 89999999999999999
Q ss_pred ccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC
Q 036375 846 LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE 917 (1009)
Q Consensus 846 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 917 (1009)
++++++|++|+|++|++++.+|..|.++++|++|+|++|++++..+..++.+++|++|++++|+++|.+|..
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 999999999999999999999999999999999999999999988888899999999999999999999964
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.9e-38 Score=365.08 Aligned_cols=392 Identities=25% Similarity=0.326 Sum_probs=194.9
Q ss_pred CCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCC-------------cEEeCCCCcCCCCC
Q 036375 377 PLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNL-------------TKLNLPGNQLNGTL 443 (1009)
Q Consensus 377 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~L~~n~l~~~~ 443 (1009)
..++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 357888889998888 6888888888999999999888888888888888765 666666666553 2
Q ss_pred CcccCCCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccC
Q 036375 444 PETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQ 523 (1009)
Q Consensus 444 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 523 (1009)
|.. .++|++|++++|.+++ ++. ..++|++|++++|.+ .+ ++.. .
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l------------------------~~-l~~~---~ 130 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNL------------------------KA-LSDL---P 130 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCC------------------------SC-CCSC---C
T ss_pred CCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCcc------------------------Cc-ccCC---C
Confidence 321 2455666666665554 221 124444444444433 21 1110 1
Q ss_pred CCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCC
Q 036375 524 QGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNN 603 (1009)
Q Consensus 524 ~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n 603 (1009)
++|++|++++|++++ +|. ...+++|++|++++|++++ +|....+|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~------------------------lp~~~~~L~~L~L~~n 183 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKK------------------------LPDLPPSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSC------------------------CCCCCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCC-Ccc--cCCCCCCCEEECCCCcCcc------------------------cCCCcccccEEECcCC
Confidence 456666666666554 442 2234555555555555443 2222346777777777
Q ss_pred cCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCC
Q 036375 604 HFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIP 683 (1009)
Q Consensus 604 ~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 683 (1009)
.+++ +|. +..+++|++|++++|++++ +|.. .++|++|++++|+++ .+| .++.+++|++|++++|++++ +|
T Consensus 184 ~l~~-l~~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~ 253 (454)
T 1jl5_A 184 QLEE-LPE--LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP 253 (454)
T ss_dssp CCSS-CCC--CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred cCCc-Ccc--ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cc
Confidence 7764 552 4567777777777777765 2222 246777777777776 445 36677777777777777764 33
Q ss_pred ccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCC
Q 036375 684 ASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS 763 (1009)
Q Consensus 684 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 763 (1009)
.. +++|++|++++|++++ +|.. .++|++|++++|++++ +|.. .++|+.|++++|++++ ++. ..+
T Consensus 254 ~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~----~~~L~~L~l~~N~l~~-i~~---~~~ 317 (454)
T 1jl5_A 254 DL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL----PPNLYYLNASSNEIRS-LCD---LPP 317 (454)
T ss_dssp SC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC----CTTCCEEECCSSCCSE-ECC---CCT
T ss_pred cc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc----CCcCCEEECcCCcCCc-ccC---CcC
Confidence 32 3567777777777764 4432 3567777777777664 3321 3566777777776664 221 114
Q ss_pred CCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCC
Q 036375 764 SLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFP 843 (1009)
Q Consensus 764 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p 843 (1009)
+|++|++++|++++ +|.. +++| +.|++++|++++ +|
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L---------------------------------------~~L~L~~N~l~~-lp 353 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRL---------------------------------------ERLIASFNHLAE-VP 353 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTC---------------------------------------CEEECCSSCCSC-CC
T ss_pred cCCEEECCCCcccc-cccc---CCcC---------------------------------------CEEECCCCcccc-cc
Confidence 66777777777665 4432 1222 666777777663 45
Q ss_pred ccccCcCCCCeEEccCCcccc--cCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee--cCCCC
Q 036375 844 TQLTKLVGLVVLNLSRNHIGG--QIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG--KIPFE 917 (1009)
Q Consensus 844 ~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g--~ip~~ 917 (1009)
. .+++|++|++++|++++ .+|.+++.+ +.|++.|.+|.. +++|++||+++|+++| .||..
T Consensus 354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 354 E---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp C---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC----------------------------------
T ss_pred c---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence 4 35667777777777766 555554432 335555666553 3788899999999988 77753
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-37 Score=357.94 Aligned_cols=216 Identities=20% Similarity=0.282 Sum_probs=98.0
Q ss_pred CccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 036375 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698 (1009)
Q Consensus 619 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 698 (1009)
+|++|++++|+++ .+| .++.+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|+++
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS 285 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence 4555555555554 233 25555566666666666553 2321 2566666666666664 3332 2566666666
Q ss_pred CccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCC
Q 036375 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS 778 (1009)
Q Consensus 699 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 778 (1009)
+|++++. |. -.++|++|++++|++++ ++. ..++|+.|++++|++++ +|.. +++|++|++++|++++
T Consensus 286 ~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~- 351 (454)
T 1jl5_A 286 ENIFSGL-SE---LPPNLYYLNASSNEIRS-LCD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE- 351 (454)
T ss_dssp SSCCSEE-SC---CCTTCCEEECCSSCCSE-ECC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred CCccCcc-cC---cCCcCCEEECcCCcCCc-ccC----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-
Confidence 6666641 11 11466777777777663 332 13467777777777774 5543 4677788888887773
Q ss_pred CChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCC--CCCccccCcCCCCeEE
Q 036375 779 IPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHG--DFPTQLTKLVGLVVLN 856 (1009)
Q Consensus 779 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ 856 (1009)
+|. .+++| +.|++++|++++ .+|..++.
T Consensus 352 lp~---~l~~L---------------------------------------~~L~L~~N~l~~l~~ip~~l~~-------- 381 (454)
T 1jl5_A 352 VPE---LPQNL---------------------------------------KQLHVEYNPLREFPDIPESVED-------- 381 (454)
T ss_dssp CCC---CCTTC---------------------------------------CEEECCSSCCSSCCCCCTTCCE--------
T ss_pred ccc---hhhhc---------------------------------------cEEECCCCCCCcCCCChHHHHh--------
Confidence 454 22333 777888888887 67766553
Q ss_pred ccCCcccccCCCCccCCCCCCEEeCCCCcCCC--CCcccccCCCCCCeEeCCCCcceecCCCC
Q 036375 857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSG--GIPSSLSSLSFLGYINLSRNQLSGKIPFE 917 (1009)
Q Consensus 857 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 917 (1009)
|+.|++.|.+|.. +++|++||+++|++++ .+|.+ ++.|++.+|.+.+++|..
T Consensus 382 L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 382 LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp EECCC----------------------------------------------------------
T ss_pred hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence 3457777777764 5788999999999987 67754 456678888888887753
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-36 Score=351.28 Aligned_cols=382 Identities=23% Similarity=0.248 Sum_probs=248.5
Q ss_pred cEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCC-CccccccccccCCCCCC
Q 036375 300 QILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSL-PEILQGTDLCVSSNSPL 378 (1009)
Q Consensus 300 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~~l 378 (1009)
+.++.+++.+. .+|. + .++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..+. .+
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~----------~l 78 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR----------GL 78 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT----------TC
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc----------cc
Confidence 45666666655 4454 2 267888888888888777777888888888888877776443 23333 56
Q ss_pred CCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCC--CCCCCCCCcEEeCCCCcCCCCCCcc-cCCCCCCCE
Q 036375 379 PSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPA--SLGNLKNLTKLNLPGNQLNGTLPET-LGSLPELSV 455 (1009)
Q Consensus 379 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~ 455 (1009)
++|++|++++|.+++..|..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..|.. +.++++|++
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 6777777777777666666677777777777777766653333 3666677777777777766655554 566666666
Q ss_pred EEccCcccccccchhhhccC--CCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcc--------cccCCC
Q 036375 456 LDVSSNSLTGIISEIHFSRL--SKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSW--------LKTQQG 525 (1009)
Q Consensus 456 L~Ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------l~~~~~ 525 (1009)
|++++|.+++..+. .+..+ .+|+.|++++|.+ ....+.+ +..+++
T Consensus 159 L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l------------------------~~~~~~~~~~~~~~~~~~~~~ 213 (455)
T 3v47_A 159 LDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITL------------------------QDMNEYWLGWEKCGNPFKNTS 213 (455)
T ss_dssp EECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBC------------------------TTCSTTCTTHHHHCCTTTTCE
T ss_pred EeCCCCcccccChh-hhhccccccccccccccCcc------------------------cccchhhccccccccccccce
Confidence 66666666654433 23332 3444555544443 3222222 234566
Q ss_pred ccEEEccCCcccCCCCchhhhcc--CcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCC
Q 036375 526 VSFLDFSNASISGPIPNWFWDIS--SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNN 603 (1009)
Q Consensus 526 L~~L~ls~n~i~~~~p~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n 603 (1009)
|++|++++|++++.+|..+.... ++++.+++++|...+....
T Consensus 214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------------------------------ 257 (455)
T 3v47_A 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------------------------------ 257 (455)
T ss_dssp EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------------------------------
T ss_pred eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------------------------------
Confidence 77777777777766666554332 3444444444433321100
Q ss_pred cCCCcCCchhhcCCCCccEEEccCCcccccCCccccc--CCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCccc
Q 036375 604 HFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE--MQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGV 681 (1009)
Q Consensus 604 ~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 681 (1009)
.+.+.+..+..+.+ .++|++|++++|++.+..|..++.+++|++|++++|++++.
T Consensus 258 -----------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 258 -----------------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp -----------------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred -----------------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 01111111112222 35677777777777777777777777888888888888777
Q ss_pred CCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCC
Q 036375 682 IPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSN 761 (1009)
Q Consensus 682 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~ 761 (1009)
.|..|..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..+. .+++|+.|++++|++++..+..+..
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhcc
Confidence 777777788888888888888777777778888888888888888766676665 4788888888888888666666788
Q ss_pred CCCCCEEEccCCcCCCCCC
Q 036375 762 LSSLQVLDLAENNLTGSIP 780 (1009)
Q Consensus 762 l~~L~~L~Ls~N~l~~~~p 780 (1009)
+++|++|++++|++++..|
T Consensus 394 l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCBCCCTT
T ss_pred CCcccEEEccCCCcccCCC
Confidence 8999999999999998877
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-37 Score=341.74 Aligned_cols=289 Identities=25% Similarity=0.427 Sum_probs=204.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCCccCCC-CCCCCC--ccceeecCCC--CcEEEEecCCCC--C---CCCCCCCCCcCCE
Q 036375 31 NCSENDLDALIDFKNGLEDPESRLASWK-GSNCCQ--WHGISCDDDT--GAIVAINLGNPY--H---VVNSDSSGSLLEY 100 (1009)
Q Consensus 31 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~-~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~--g---i~~~l~~l~~L~~ 100 (1009)
.|.++|++||++||+++.||. .+++|+ +++||. |.||+|+..+ ++|+.|++++.. | +|+.++++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 699999999999999998886 788998 578998 9999998765 899999988764 3 6778888888888
Q ss_pred EeCCC-CCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCCCCCeEEcC
Q 036375 101 LDLSF-NTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAMN 179 (1009)
Q Consensus 101 LdLs~-~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l~ 179 (1009)
|+|++ |.+.+ .+|..++.+++|++|+|++|.+.+.+|..++++++|++|++++|.+.
T Consensus 81 L~L~~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--------------------- 138 (313)
T 1ogq_A 81 LYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS--------------------- 138 (313)
T ss_dssp EEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE---------------------
T ss_pred eeCCCCCcccc-cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC---------------------
Confidence 88884 77776 67888888888888888888888788888888888888888877432
Q ss_pred CccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCC-CCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCc
Q 036375 180 RVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLT-SPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCD 258 (1009)
Q Consensus 180 ~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~ 258 (1009)
+ .++..+..+++|++|++++|.+++.+|..+ ..++ +|++|++++|.+++.+|..+..++ |++|++++|.
T Consensus 139 -----~---~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 139 -----G---TLPPSISSLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp -----S---CCCGGGGGCTTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred -----C---cCChHHhcCCCCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 1 134556667777777777777776666655 4554 777777777777777777777776 7777777777
Q ss_pred CcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCc
Q 036375 259 LYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIP 338 (1009)
Q Consensus 259 ~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~ 338 (1009)
+.+.+|..+..+++|++|++++|.+ .+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSL--AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEE--CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCce--eeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 7777777777777777777777642 222222 3445555555555555555555555555555555555555555555
Q ss_pred hhhhcccCCCEEEcCCCc
Q 036375 339 SSIARLCYLKEFDLSGNN 356 (1009)
Q Consensus 339 ~~l~~l~~L~~L~l~~n~ 356 (1009)
.. ..+++|+.+++++|.
T Consensus 286 ~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CS-TTGGGSCGGGTCSSS
T ss_pred CC-ccccccChHHhcCCC
Confidence 43 445555555555554
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.7e-35 Score=337.06 Aligned_cols=415 Identities=20% Similarity=0.216 Sum_probs=201.3
Q ss_pred ccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccc
Q 036375 292 FRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLC 371 (1009)
Q Consensus 292 ~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 371 (1009)
.++.+++|++|++++|.+.+. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. + +.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~----- 103 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VT----- 103 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CT-----
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cC-----
Confidence 334445555555555555432 3 345555555555555555442 2 44455555555555544432 1 11
Q ss_pred cCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCC
Q 036375 372 VSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLP 451 (1009)
Q Consensus 372 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 451 (1009)
.+++|++|++++|.+++ +| +..+++|++|++++|.+++. + ++.+++|++|++++|...+.+ .+..++
T Consensus 104 -----~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 104 -----PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp -----TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred -----CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCC
Confidence 34445555555554443 22 44444555555555544432 1 444444555555544333332 234444
Q ss_pred CCCEEEccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEc
Q 036375 452 ELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDF 531 (1009)
Q Consensus 452 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 531 (1009)
+|++|++++|.+++. + +..+++|++|++++|.+ .+. .+..+++|++|++
T Consensus 171 ~L~~L~ls~n~l~~l-~---l~~l~~L~~L~l~~N~l------------------------~~~---~l~~l~~L~~L~L 219 (457)
T 3bz5_A 171 QLTTLDCSFNKITEL-D---VSQNKLLNRLNCDTNNI------------------------TKL---DLNQNIQLTFLDC 219 (457)
T ss_dssp TCCEEECCSSCCCCC-C---CTTCTTCCEEECCSSCC------------------------SCC---CCTTCTTCSEEEC
T ss_pred cCCEEECCCCcccee-c---cccCCCCCEEECcCCcC------------------------Cee---ccccCCCCCEEEC
Confidence 444555544444431 1 33444444444444433 322 1444555555555
Q ss_pred cCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCc
Q 036375 532 SNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQ 611 (1009)
Q Consensus 532 s~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~ 611 (1009)
++|++++ +| ...+++|+.|++++|++++.. +..+++|+.|++++|
T Consensus 220 s~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~-----------------------~~~l~~L~~L~l~~n-------- 264 (457)
T 3bz5_A 220 SSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD-----------------------VSTLSKLTTLHCIQT-------- 264 (457)
T ss_dssp CSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC-----------------------CTTCTTCCEEECTTC--------
T ss_pred cCCcccc-cC---ccccCCCCEEEeeCCcCCCcC-----------------------HHHCCCCCEEeccCC--------
Confidence 5555554 33 123345555555555554421 122334444444432
Q ss_pred hhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCC
Q 036375 612 NISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTR 691 (1009)
Q Consensus 612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 691 (1009)
+|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ..++|+.|++++| ++
T Consensus 265 -------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~ 319 (457)
T 3bz5_A 265 -------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PK 319 (457)
T ss_dssp -------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TT
T ss_pred -------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------cc
Confidence 23344455554444443 34455566666666655555543 2233444443333 56
Q ss_pred CCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEcc
Q 036375 692 LQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLA 771 (1009)
Q Consensus 692 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 771 (1009)
|++|++++|++++. + +..+++|+.|++++|++++ ++.|..|++++|.+.|. ..+..|+.++++
T Consensus 320 L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~ 382 (457)
T 3bz5_A 320 LVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLT 382 (457)
T ss_dssp CCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCB
T ss_pred CCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccc
Confidence 77777777777763 2 6677777777777777763 23455556777777665 234456667777
Q ss_pred CCcCCCCCChhhhhhh-hhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccC
Q 036375 772 ENNLTGSIPGSVGDLK-AMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTK 848 (1009)
Q Consensus 772 ~N~l~~~~p~~~~~l~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~ 848 (1009)
+|+++|.+|..+.+.. .+.... ....+.+......+.|++....+.........++|.++|.|+..+..
T Consensus 383 ~N~l~g~ip~~~~~~~~~~~~~~--------~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~~~ 452 (457)
T 3bz5_A 383 NNSLTIAVSPDLLDQFGNPMNIE--------PGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEA 452 (457)
T ss_dssp TTBEEEECCTTCBCTTSCCCEEE--------ESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEBC-
T ss_pred cCcEEEEcChhHhcccCceeecc--------CCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEecccccc
Confidence 7777777776543321 110000 00011222233345566655544443344444567777766655443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5e-35 Score=336.81 Aligned_cols=354 Identities=21% Similarity=0.253 Sum_probs=209.9
Q ss_pred CCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEE
Q 036375 377 PLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVL 456 (1009)
Q Consensus 377 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 456 (1009)
.+++|++|++++|.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 355666666666666543 3 455566666666666665543 2 55566666666666665543 2 5555666666
Q ss_pred EccCcccccccchhhhccCCCCcEEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcc
Q 036375 457 DVSSNSLTGIISEIHFSRLSKLKFLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASI 536 (1009)
Q Consensus 457 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i 536 (1009)
++++|.+++. + +..+++|++|++++|++... + +..++
T Consensus 112 ~L~~N~l~~l-~---~~~l~~L~~L~l~~N~l~~l-------------------------~--l~~l~------------ 148 (457)
T 3bz5_A 112 NCDTNKLTKL-D---VSQNPLLTYLNCARNTLTEI-------------------------D--VSHNT------------ 148 (457)
T ss_dssp ECCSSCCSCC-C---CTTCTTCCEEECTTSCCSCC-------------------------C--CTTCT------------
T ss_pred ECCCCcCCee-c---CCCCCcCCEEECCCCcccee-------------------------c--cccCC------------
Confidence 6666655542 1 44555555555555543211 0 22233
Q ss_pred cCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcC
Q 036375 537 SGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGS 616 (1009)
Q Consensus 537 ~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~ 616 (1009)
+|+.|++++|+..+.++ ...+++|+.|++++|++++ +| +..
T Consensus 149 -------------~L~~L~l~~n~~~~~~~----------------------~~~l~~L~~L~ls~n~l~~-l~---l~~ 189 (457)
T 3bz5_A 149 -------------QLTELDCHLNKKITKLD----------------------VTPQTQLTTLDCSFNKITE-LD---VSQ 189 (457)
T ss_dssp -------------TCCEEECTTCSCCCCCC----------------------CTTCTTCCEEECCSSCCCC-CC---CTT
T ss_pred -------------cCCEEECCCCCcccccc----------------------cccCCcCCEEECCCCccce-ec---ccc
Confidence 33334333332222111 0012445555555555553 33 344
Q ss_pred CCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 036375 617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH 696 (1009)
Q Consensus 617 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 696 (1009)
+++|++|++++|++++. .++.+++|++|++++|++++ +| +..+++|++|++++|++++.. ++.+++|+.|+
T Consensus 190 l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~ 260 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLH 260 (457)
T ss_dssp CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEE
T ss_pred CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEe
Confidence 56666666666666654 25556666666666666665 33 556666666666666666542 33455566666
Q ss_pred ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375 697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 776 (1009)
+++| +|+.|++++|.+.+.+|.. .+++|+.|++++|...+.+|. ..++|+.|++++|
T Consensus 261 l~~n--------------~L~~L~l~~n~~~~~~~~~---~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~--- 317 (457)
T 3bz5_A 261 CIQT--------------DLLEIDLTHNTQLIYFQAE---GCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN--- 317 (457)
T ss_dssp CTTC--------------CCSCCCCTTCTTCCEEECT---TCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC---
T ss_pred ccCC--------------CCCEEECCCCccCCccccc---ccccCCEEECCCCcccceecc---CCCcceEechhhc---
Confidence 5543 3445666666666666532 356666666666666655553 2344555555544
Q ss_pred CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEE
Q 036375 777 GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLN 856 (1009)
Q Consensus 777 ~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 856 (1009)
+ .++.|+|++|++++. + ++++++|+.|+
T Consensus 318 ----------~---------------------------------------~L~~L~L~~N~l~~l-~--l~~l~~L~~L~ 345 (457)
T 3bz5_A 318 ----------P---------------------------------------KLVYLYLNNTELTEL-D--VSHNTKLKSLS 345 (457)
T ss_dssp ----------T---------------------------------------TCCEEECTTCCCSCC-C--CTTCTTCSEEE
T ss_pred ----------c---------------------------------------cCCEEECCCCccccc-c--cccCCcCcEEE
Confidence 1 238899999999984 3 88999999999
Q ss_pred ccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC
Q 036375 857 LSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE 917 (1009)
Q Consensus 857 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 917 (1009)
+++|++++ ++.|+.|++++|.++|. ..+..|..+++++|+++|.||..
T Consensus 346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 99999986 24677788999999986 34567888999999999999964
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=342.54 Aligned_cols=346 Identities=20% Similarity=0.207 Sum_probs=283.5
Q ss_pred EEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCC
Q 036375 528 FLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSG 607 (1009)
Q Consensus 528 ~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~ 607 (1009)
.++.++++++ .+|..+ .+.++.|++++|++++..+..+. .+++|++|++++|.+++
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~--------------------~l~~L~~L~L~~n~i~~ 70 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFA--------------------SFPHLEELELNENIVSA 70 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTT--------------------TCTTCCEEECTTSCCCE
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHcc--------------------CCCCCCEEECCCCccCE
Confidence 4555555554 334332 24666777777776655444332 24678888888888875
Q ss_pred cCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCcccc
Q 036375 608 PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLG 687 (1009)
Q Consensus 608 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 687 (1009)
..| ..+..+++|++|++++|++++..+..|.++++|++|++++|++.+..|..|..+++|++|++++|++++..|..|.
T Consensus 71 ~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 149 (477)
T 2id5_A 71 VEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149 (477)
T ss_dssp ECT-TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST
T ss_pred eCh-hhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhcc
Confidence 444 4557889999999999999988888889999999999999999988899999999999999999999998888999
Q ss_pred CCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCE
Q 036375 688 QLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQV 767 (1009)
Q Consensus 688 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 767 (1009)
.+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+.+|.......+|+.
T Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 228 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228 (477)
T ss_dssp TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSE
T ss_pred CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc-cCcccceeeCCCCccccccCcccccCccccE
Confidence 999999999999999987777899999999999999999865554544 5899999999999988888888877889999
Q ss_pred EEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcccc
Q 036375 768 LDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLT 847 (1009)
Q Consensus 768 L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~ 847 (1009)
|++++|++++..+..+.+++.| +.|+|++|.+++..+..|.
T Consensus 229 L~l~~n~l~~~~~~~~~~l~~L---------------------------------------~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 229 LSITHCNLTAVPYLAVRHLVYL---------------------------------------RFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EEEESSCCCSCCHHHHTTCTTC---------------------------------------CEEECCSSCCCEECTTSCT
T ss_pred EECcCCcccccCHHHhcCcccc---------------------------------------CeeECCCCcCCccChhhcc
Confidence 9999999996555677777766 8999999999998899999
Q ss_pred CcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCcccCCc
Q 036375 848 KLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASS 927 (1009)
Q Consensus 848 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~ 927 (1009)
++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++++..+....+.......
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~ 349 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLN 349 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSC
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccc
Confidence 99999999999999999999999999999999999999999888899999999999999999987655322222223345
Q ss_pred CCCCCCCCCCC
Q 036375 928 FAGNPGLCGDP 938 (1009)
Q Consensus 928 ~~~n~~lc~~~ 938 (1009)
+.++...|..|
T Consensus 350 ~~~~~~~C~~p 360 (477)
T 2id5_A 350 FNRQQPTCATP 360 (477)
T ss_dssp CTTCCCBEEES
T ss_pred cCccCceeCCc
Confidence 66777777544
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.7e-34 Score=333.98 Aligned_cols=214 Identities=31% Similarity=0.457 Sum_probs=125.8
Q ss_pred CCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEE
Q 036375 641 MQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLD 720 (1009)
Q Consensus 641 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 720 (1009)
+++|++|++++|.+++. ..+..+++|++|++++|++++..| ++.+++|+.|++++|++++. ..+..+++|++|+
T Consensus 176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 249 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 249 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEE
Confidence 33444444444443322 124444444455555444444333 34445555555555555432 2345555555555
Q ss_pred CcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhh
Q 036375 721 LGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLL 800 (1009)
Q Consensus 721 L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~ 800 (1009)
+++|.+++..| +. .+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| ++.+++|
T Consensus 250 l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L----------- 311 (466)
T 1o6v_A 250 LANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL----------- 311 (466)
T ss_dssp CCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC-----------
T ss_pred CCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC-----------
Confidence 55555553322 22 35566666666666654333 5566666666666666665433 4444444
Q ss_pred ccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEe
Q 036375 801 FGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLD 880 (1009)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 880 (1009)
+.|+|++|++++..| +..+++|+.|++++|++++. ..++++++|+.|+
T Consensus 312 ----------------------------~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 312 ----------------------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp ----------------------------SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred ----------------------------CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 667777777776655 66777788888888877765 4577788888888
Q ss_pred CCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375 881 LSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912 (1009)
Q Consensus 881 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 912 (1009)
+++|++++.+| +..+++|++|++++|++++
T Consensus 360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88888887766 7778888888888888877
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.7e-35 Score=324.17 Aligned_cols=258 Identities=32% Similarity=0.575 Sum_probs=193.8
Q ss_pred CCCeEEccCCcCCc--cCcCcccCCCCCCEEECCC-CcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEE
Q 036375 643 LLQVIDLSRNSISG--SISSSIGNCTFLKVLDLSY-SSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL 719 (1009)
Q Consensus 643 ~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 719 (1009)
+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|+.+++|++|++++|++++.+|..|..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34455555555554 4555555555555555553 55555555555555666666666666655556666666666666
Q ss_pred ECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCC-CCCEEEccCCcCCCCCChhhhhhhhhhhccchhhh
Q 036375 720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLS-SLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKY 798 (1009)
Q Consensus 720 ~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~ 798 (1009)
++++|.+++.+|..+.. +++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |
T Consensus 131 ~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------- 199 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------- 199 (313)
T ss_dssp ECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C---------
T ss_pred eCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c---------
Confidence 66666666566665553 66666666666666666666666666 777888888888777777776654 4
Q ss_pred hhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCE
Q 036375 799 LLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLAS 878 (1009)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 878 (1009)
+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|. +..+++|++
T Consensus 200 ------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~ 248 (313)
T 1ogq_A 200 ------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNG 248 (313)
T ss_dssp ------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCE
T ss_pred ------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCE
Confidence 7888888888888899999999999999999999988776 888999999
Q ss_pred EeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCcccCCcCCCCCCCCCCCCCCCC
Q 036375 879 LDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTTFDASSFAGNPGLCGDPLPVKC 943 (1009)
Q Consensus 879 L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~~~~~~c 943 (1009)
|++++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.+|+++||.|+. .|
T Consensus 249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp EECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred EECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 99999999999999999999999999999999999999888888888899999999998875 56
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-33 Score=327.25 Aligned_cols=195 Identities=29% Similarity=0.435 Sum_probs=118.6
Q ss_pred cccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCC
Q 036375 638 IGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717 (1009)
Q Consensus 638 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 717 (1009)
+..+++|++|++++|++.+..| ++.+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 4444555555555555554433 44455555555555555532 235555566666666666554332 55566666
Q ss_pred EEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhh
Q 036375 718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVK 797 (1009)
Q Consensus 718 ~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~ 797 (1009)
+|++++|.+++ +|. +. .+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +..++.|
T Consensus 269 ~L~l~~n~l~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L-------- 333 (466)
T 1o6v_A 269 ELKLGANQISN-ISP-LA-GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL-------- 333 (466)
T ss_dssp EEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC--------
T ss_pred EEECCCCccCc-ccc-cc-CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC--------
Confidence 66666666653 232 22 36666666666666654333 5566667777777777666544 4444444
Q ss_pred hhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCC
Q 036375 798 YLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLA 877 (1009)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 877 (1009)
+.|++++|.+++. ..+.++++|+.|++++|++++.+| +..+++|+
T Consensus 334 -------------------------------~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 334 -------------------------------QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp -------------------------------CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred -------------------------------CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence 6677777777664 357777788888888888887776 77788888
Q ss_pred EEeCCCCcCCC
Q 036375 878 SLDLSSNNLSG 888 (1009)
Q Consensus 878 ~L~Ls~N~l~~ 888 (1009)
.|++++|.+++
T Consensus 379 ~L~l~~n~~~~ 389 (466)
T 1o6v_A 379 QLGLNDQAWTN 389 (466)
T ss_dssp EEECCCEEEEC
T ss_pred EEeccCCcccC
Confidence 88888888876
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.6e-34 Score=331.09 Aligned_cols=304 Identities=23% Similarity=0.260 Sum_probs=272.6
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
.+++.|++++|.+++ ++...+..+++|++|++++|.+++..|.+|.++++|++|++++|++++..+..|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 689999999999985 4445667899999999999999999999999999999999999999988778899999999999
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS 752 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~ 752 (1009)
+++|++++..|..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|...+..+++|+.|++++|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCc
Confidence 9999999999999999999999999999999988999999999999999999998 555554446999999999999999
Q ss_pred ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEE
Q 036375 753 GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFID 832 (1009)
Q Consensus 753 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 832 (1009)
+..+..+..+++|+.|++++|++.+.+|.......+| +.|+
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L---------------------------------------~~L~ 230 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL---------------------------------------TSLS 230 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC---------------------------------------SEEE
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccc---------------------------------------cEEE
Confidence 8888899999999999999999988887665444333 8999
Q ss_pred ccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375 833 LSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912 (1009)
Q Consensus 833 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 912 (1009)
|++|++++..+..+.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..|..+++|++||+++|++++
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 99999997666789999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC-CCCCcccCCcCCCCCCCCCC
Q 036375 913 KIPFE-GHMTTFDASSFAGNPGLCGD 937 (1009)
Q Consensus 913 ~ip~~-~~~~~~~~~~~~~n~~lc~~ 937 (1009)
..|.. ..+..+....+.+||+.|.+
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred eCHhHcCCCcccCEEEccCCCccCcc
Confidence 65532 33455666778999998864
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3e-32 Score=326.54 Aligned_cols=335 Identities=21% Similarity=0.238 Sum_probs=277.7
Q ss_pred CCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccC
Q 036375 523 QQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSN 602 (1009)
Q Consensus 523 ~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~ 602 (1009)
+.+++.+++++|.+.. +|..++..+++|+.|++++|.+++..|..+. .+++|+.|++++
T Consensus 50 l~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------------------~l~~L~~L~L~~ 108 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFA--------------------YAHTIQKLYMGF 108 (597)
T ss_dssp GCCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTT--------------------TCTTCCEEECCS
T ss_pred CCCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhc--------------------CCCCCCEEECCC
Confidence 4567778888877764 4555555667888888888887766554432 246788889999
Q ss_pred CcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccC
Q 036375 603 NHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI 682 (1009)
Q Consensus 603 n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 682 (1009)
|.+++ +|...++.+++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|..+++|++|++++|.+++..
T Consensus 109 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 109 NAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CcCCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 98885 55566778999999999999999887777899999999999999999999989999999999999999998753
Q ss_pred CccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCC
Q 036375 683 PASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNL 762 (1009)
Q Consensus 683 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l 762 (1009)
++.+++|+.|++++|.+++ +...++|+.|++++|.+. .+|... .++|+.|++++|.+++ +..+..+
T Consensus 188 ---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l 253 (597)
T 3oja_B 188 ---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNY 253 (597)
T ss_dssp ---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGC
T ss_pred ---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccC
Confidence 5667899999999998875 345578999999999997 455442 5789999999999986 4678999
Q ss_pred CCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCC
Q 036375 763 SSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF 842 (1009)
Q Consensus 763 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~ 842 (1009)
++|+.|++++|.+++.+|..++.++.| +.|+|++|.+++ +
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------------~~L~Ls~N~l~~-l 293 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRL---------------------------------------ERLYISNNRLVA-L 293 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSC---------------------------------------CEEECTTSCCCE-E
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCC---------------------------------------CEEECCCCCCCC-C
Confidence 999999999999999999999888877 899999999997 5
Q ss_pred CccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCc
Q 036375 843 PTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTT 922 (1009)
Q Consensus 843 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~ 922 (1009)
|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++.. +..+++|++|++++|++++..+. ..+..
T Consensus 294 ~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~ 368 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRN 368 (597)
T ss_dssp ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTT
T ss_pred CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHH
Confidence 777888999999999999999 57778899999999999999999753 67788999999999999987432 23455
Q ss_pred ccCCcCCCCCCCCCCC
Q 036375 923 FDASSFAGNPGLCGDP 938 (1009)
Q Consensus 923 ~~~~~~~~n~~lc~~~ 938 (1009)
+....+.+++..|+.+
T Consensus 369 ~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 369 VARPAVDDADQHCKID 384 (597)
T ss_dssp CCTTTBCCCCCCCCTT
T ss_pred HhhhccccccccCCcc
Confidence 6666778888899763
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.8e-32 Score=307.71 Aligned_cols=335 Identities=21% Similarity=0.238 Sum_probs=260.4
Q ss_pred CCCccEEEccCCcccCCCCchhhhccCcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccC
Q 036375 523 QQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSN 602 (1009)
Q Consensus 523 ~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~ 602 (1009)
+++++.+++++|.++. +|..++..+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 44 l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--------------------~l~~L~~L~L~~ 102 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFA--------------------YAHTIQKLYMGF 102 (390)
T ss_dssp GCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTT--------------------TCTTCCEEECCS
T ss_pred cCCceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhcc--------------------CCCCcCEEECCC
Confidence 4667778888877663 4555555667788888888877755443332 246788888888
Q ss_pred CcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccC
Q 036375 603 NHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVI 682 (1009)
Q Consensus 603 n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 682 (1009)
|.+.+ ++...+..+++|++|++++|+++...+..|.++++|++|++++|++++..|..+..+++|++|++++|++++.
T Consensus 103 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 180 (390)
T 3o6n_A 103 NAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV- 180 (390)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-
T ss_pred CCCCc-CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-
Confidence 88874 4445667788999999999998876666678889999999999999888888888999999999999998865
Q ss_pred CccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCC
Q 036375 683 PASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNL 762 (1009)
Q Consensus 683 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l 762 (1009)
.+..+++|+.|++++|.+++ +...++|++|++++|.+. .+|.. ..++|+.|++++|.+++. ..+..+
T Consensus 181 --~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l 247 (390)
T 3o6n_A 181 --DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNY 247 (390)
T ss_dssp --CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred --ccccccccceeecccccccc-----cCCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCC
Confidence 25667889999999998874 234568999999999987 45554 267899999999999854 568889
Q ss_pred CCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCC
Q 036375 763 SSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF 842 (1009)
Q Consensus 763 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~ 842 (1009)
++|++|++++|++++..|..+..+++| +.|+|++|++++ +
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------------~~L~L~~n~l~~-~ 287 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRL---------------------------------------ERLYISNNRLVA-L 287 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSC---------------------------------------CEEECCSSCCCE-E
T ss_pred CCccEEECCCCcCCCcChhHccccccC---------------------------------------CEEECCCCcCcc-c
Confidence 999999999999998888888887777 889999999986 5
Q ss_pred CccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCCCCCCc
Q 036375 843 PTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFEGHMTT 922 (1009)
Q Consensus 843 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~ 922 (1009)
|..+..+++|++|+|++|+++ .+|..++.+++|++|++++|++++. | +..+++|++|++++|++++.... ..+..
T Consensus 288 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~ 362 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRN 362 (390)
T ss_dssp ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTT
T ss_pred CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHH
Confidence 667788899999999999998 4566788899999999999999865 3 67788999999999999875322 12334
Q ss_pred ccCCcCCCCCCCCCCC
Q 036375 923 FDASSFAGNPGLCGDP 938 (1009)
Q Consensus 923 ~~~~~~~~n~~lc~~~ 938 (1009)
+....+.+++..|+.+
T Consensus 363 ~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 363 VARPAVDDADQHCKID 378 (390)
T ss_dssp CCTTTBCCCCSCCCTT
T ss_pred HHhhcccccCceeccc
Confidence 4445566676667643
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.1e-30 Score=291.77 Aligned_cols=310 Identities=20% Similarity=0.209 Sum_probs=175.6
Q ss_pred CCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhh
Q 036375 320 MTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWL 399 (1009)
Q Consensus 320 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 399 (1009)
+++++.|+++++.+....+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+++..|..+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----------~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----------YAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT----------TCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc----------CCCCcCEEECCCCCCCcCCHHHh
Confidence 46677777777766654444466677777777777766655554444 56677777777777776666667
Q ss_pred cCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCc
Q 036375 400 SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLK 479 (1009)
Q Consensus 400 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 479 (1009)
..+++|++|++++|.++...+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++. .+..+++|+
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~ 189 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLF 189 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCS
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----ccccccccc
Confidence 7777777777777777754444567777777777777777766666677777777777777777643 244566666
Q ss_pred EEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccc
Q 036375 480 FLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLN 559 (1009)
Q Consensus 480 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n 559 (1009)
.|++++|.+... ... ++++.|++++|
T Consensus 190 ~L~l~~n~l~~~-----------------------------~~~-------------------------~~L~~L~l~~n 215 (390)
T 3o6n_A 190 HANVSYNLLSTL-----------------------------AIP-------------------------IAVEELDASHN 215 (390)
T ss_dssp EEECCSSCCSEE-----------------------------ECC-------------------------SSCSEEECCSS
T ss_pred eeeccccccccc-----------------------------CCC-------------------------CcceEEECCCC
Confidence 666666644210 111 12333333333
Q ss_pred cccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccc
Q 036375 560 QLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG 639 (1009)
Q Consensus 560 ~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 639 (1009)
.+... |. ....+|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+.
T Consensus 216 ~l~~~-~~----------------------~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 216 SINVV-RG----------------------PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp CCCEE-EC----------------------CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred eeeec-cc----------------------cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 32211 00 0013455555555555432 2334455555555555555555555555
Q ss_pred cCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEE
Q 036375 640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL 719 (1009)
Q Consensus 640 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 719 (1009)
.+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. + +..+++|++|
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L 344 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 344 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEE
Confidence 55555555555555553 2334445555555555555555 2344444555555555555555432 1 3444555555
Q ss_pred ECcCCcccc
Q 036375 720 DLGNNRFSG 728 (1009)
Q Consensus 720 ~L~~N~l~~ 728 (1009)
++++|++.+
T Consensus 345 ~l~~N~~~~ 353 (390)
T 3o6n_A 345 TLSHNDWDC 353 (390)
T ss_dssp ECCSSCEEH
T ss_pred EcCCCCccc
Confidence 555555543
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.3e-30 Score=286.92 Aligned_cols=259 Identities=26% Similarity=0.385 Sum_probs=201.4
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
++|++|++++|.+++ ++ .+..+++|++|++++|++++..+ +..+++|++|++++|.....++ .+..+++|++|+
T Consensus 88 ~~L~~L~L~~n~i~~-~~--~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~ 161 (347)
T 4fmz_A 88 VKLTNLYIGTNKITD-IS--ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT 161 (347)
T ss_dssp TTCCEEECCSSCCCC-CG--GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEE
T ss_pred CcCCEEEccCCcccC-ch--HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEE
Confidence 456666666666653 33 35677888888888888876543 7788888888888886654444 488888888888
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS 752 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~ 752 (1009)
+++|++.+..+ +..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +. .+++|+.|++++|+++
T Consensus 162 l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VA-NMTRLNSLKIGNNKIT 234 (347)
T ss_dssp CCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCC
T ss_pred ecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hh-cCCcCCEEEccCCccC
Confidence 88888876544 77888889999988888754 33 7888889999999988874433 33 4888999999999888
Q ss_pred ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEE
Q 036375 753 GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFID 832 (1009)
Q Consensus 753 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 832 (1009)
+..+ +..+++|++|++++|++++. ..+..+++| +.|+
T Consensus 235 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------------------------------------~~L~ 271 (347)
T 4fmz_A 235 DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKL---------------------------------------KMLN 271 (347)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC---------------------------------------CEEE
T ss_pred CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCc---------------------------------------CEEE
Confidence 5443 88889999999999988863 345555544 8889
Q ss_pred ccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcce
Q 036375 833 LSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911 (1009)
Q Consensus 833 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 911 (1009)
+++|++++. +.+..+++|+.|++++|++++..|+.++++++|++|++++|++++..| ++.+++|++||+++|+++
T Consensus 272 l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999998875 458889999999999999999888889999999999999999998766 888999999999999875
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.9e-30 Score=283.97 Aligned_cols=269 Identities=21% Similarity=0.287 Sum_probs=196.4
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
+.++.|++++|.++ .++...+..+++|++|++++|++++..|..|+++++|++|++++|+++ .+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 46777788888777 344445567788888888888888777777888888888888888777 3444443 6788888
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccC--CCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG--NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA 750 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~ 750 (1009)
+++|++++..+..|..+++|++|++++|.++. ..+..+..+++|++|++++|.++ .+|..+ .++|+.|++++|+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~ 203 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNK 203 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCc
Confidence 88888877766777778888888888887753 56677777888888888888776 566653 3677888888888
Q ss_pred ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375 751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF 830 (1009)
Q Consensus 751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 830 (1009)
+++..|..+..+++|+.|++++|++++..|..+..+++| +.
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------------~~ 244 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL---------------------------------------RE 244 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC---------------------------------------CE
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC---------------------------------------CE
Confidence 877777777778888888888888877766667666665 77
Q ss_pred EEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCC------CCCCEEeCCCCcCCC--CCcccccCCCCCCe
Q 036375 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGL------HQLASLDLSSNNLSG--GIPSSLSSLSFLGY 902 (1009)
Q Consensus 831 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~ 902 (1009)
|+|++|+++ .+|..+..+++|++|++++|++++..+..|... ..|+.|++++|.+.. ..|..|..+..++.
T Consensus 245 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp EECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred EECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence 788888777 667777777888888888888877766666433 667778888887753 55677777777888
Q ss_pred EeCCCCc
Q 036375 903 INLSRNQ 909 (1009)
Q Consensus 903 L~ls~N~ 909 (1009)
+++++|+
T Consensus 324 l~L~~N~ 330 (330)
T 1xku_A 324 VQLGNYK 330 (330)
T ss_dssp EEC----
T ss_pred EEecccC
Confidence 8887774
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.7e-30 Score=284.23 Aligned_cols=268 Identities=22% Similarity=0.275 Sum_probs=223.9
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
++++.|++++|.+. .++...+..+++|++|++++|++++..|.+|+++++|++|++++|+++ .+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 57888999999887 444455678899999999999999888888999999999999999988 4454444 7899999
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCcccc--CCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLT--GNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA 750 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~ 750 (1009)
+++|++++..+..|..+++|++|++++|.++ +..|..+..+ +|++|++++|.++ .+|..+ .++|+.|++++|.
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNK 204 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCc
Confidence 9999999777777889999999999999986 4677778877 8999999999988 577764 4789999999999
Q ss_pred ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375 751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF 830 (1009)
Q Consensus 751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 830 (1009)
+++..+..+..+++|++|++++|++++..|..+..+++| +.
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------------------------------~~ 245 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL---------------------------------------RE 245 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC---------------------------------------CE
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC---------------------------------------CE
Confidence 988877889999999999999999998888788877776 88
Q ss_pred EEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCC------CCCCEEeCCCCcCC--CCCcccccCCCCCCe
Q 036375 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGL------HQLASLDLSSNNLS--GGIPSSLSSLSFLGY 902 (1009)
Q Consensus 831 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~Ls~N~l~--~~ip~~l~~l~~L~~ 902 (1009)
|+|++|+++ .+|..+..+++|+.|++++|++++..+..|... .+|+.|++++|.+. +..|..|..++.|+.
T Consensus 246 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp EECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred EECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhh
Confidence 899999998 788889999999999999999998887777654 67889999999887 678888999999999
Q ss_pred EeCCCCc
Q 036375 903 INLSRNQ 909 (1009)
Q Consensus 903 L~ls~N~ 909 (1009)
+++++|+
T Consensus 325 l~l~~n~ 331 (332)
T 2ft3_A 325 IQFGNYK 331 (332)
T ss_dssp EEC----
T ss_pred hhccccc
Confidence 9998884
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.2e-29 Score=303.92 Aligned_cols=311 Identities=22% Similarity=0.246 Sum_probs=180.8
Q ss_pred CCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhh
Q 036375 320 MTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWL 399 (1009)
Q Consensus 320 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 399 (1009)
+++++.+++++|.+....+..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++..|..|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----------~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----------YAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT----------TCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc----------CCCCCCEEECCCCcCCCCCHHHH
Confidence 45666666666666655455556666666666666666655544444 45666666666666665555566
Q ss_pred cCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhhhccCCCCc
Q 036375 400 SQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIHFSRLSKLK 479 (1009)
Q Consensus 400 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 479 (1009)
+.+++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++. .+..+++|+
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~L~ 195 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLF 195 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----CGGGCTTCS
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----Chhhhhhhh
Confidence 6666666666666666655445556666666666666666666665666666666666666666542 123344444
Q ss_pred EEeCCCCcccccCCCCCCCCccccEEecccCcCCCCCCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEeccc
Q 036375 480 FLGLSSNSFILNVSSSWIPPFQVQSLNMRSCQLGPSFPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLN 559 (1009)
Q Consensus 480 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n 559 (1009)
.|++++|.+ ++. ..
T Consensus 196 ~L~l~~n~l------------------------------------------------~~l------~~------------ 209 (597)
T 3oja_B 196 HANVSYNLL------------------------------------------------STL------AI------------ 209 (597)
T ss_dssp EEECCSSCC------------------------------------------------SEE------EC------------
T ss_pred hhhcccCcc------------------------------------------------ccc------cC------------
Confidence 444444322 100 00
Q ss_pred cccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccc
Q 036375 560 QLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG 639 (1009)
Q Consensus 560 ~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 639 (1009)
..+|+.|++++|.+. .++.. ..
T Consensus 210 --------------------------------~~~L~~L~ls~n~l~-~~~~~---~~---------------------- 231 (597)
T 3oja_B 210 --------------------------------PIAVEELDASHNSIN-VVRGP---VN---------------------- 231 (597)
T ss_dssp --------------------------------CTTCSEEECCSSCCC-EEECS---CC----------------------
T ss_pred --------------------------------CchhheeeccCCccc-ccccc---cC----------------------
Confidence 012334444444333 11111 11
Q ss_pred cCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEE
Q 036375 640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL 719 (1009)
Q Consensus 640 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 719 (1009)
++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|
T Consensus 232 --~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 306 (597)
T 3oja_B 232 --VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL 306 (597)
T ss_dssp --SCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEE
T ss_pred --CCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEE
Confidence 3455555555555542 345556666666666666666666666666666666666666664 35555566677777
Q ss_pred ECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCC
Q 036375 720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS 778 (1009)
Q Consensus 720 ~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 778 (1009)
+|++|.++ .+|..+. .+++|+.|++++|.+++. | +..+++|+.|++++|++++.
T Consensus 307 ~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 307 DLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 77777766 5666655 367777777777777643 2 56677788888888887643
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.6e-31 Score=294.30 Aligned_cols=282 Identities=17% Similarity=0.188 Sum_probs=162.4
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCC-CCCCCccCCC-----CCCCCCccceeecCCCCcEEEEecCCCCCCCCCCCCCCcC
Q 036375 25 GASRFSNCSENDLDALIDFKNGLE-DPESRLASWK-----GSNCCQWHGISCDDDTGAIVAINLGNPYHVVNSDSSGSLL 98 (1009)
Q Consensus 25 ~~~~~~~~~~~~~~~ll~~k~~~~-~~~~~~~~W~-----~~~~c~w~gv~c~~~~~~v~~l~l~~~~gi~~~l~~l~~L 98 (1009)
..++...+..+|++||++||+++. ||.+...+|. ..++|.|.||.|+.....+. -....++
T Consensus 17 ~~~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~-------------~~~~~~l 83 (328)
T 4fcg_A 17 LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE-------------DATQPGR 83 (328)
T ss_dssp CCCC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHH-------------HHTSTTC
T ss_pred eeeeccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHh-------------cccccce
Confidence 344445677899999999999885 7777778893 46799999999963110000 0112344
Q ss_pred CEEeCCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCCCCCeEEc
Q 036375 99 EYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVSLKHLAM 178 (1009)
Q Consensus 99 ~~LdLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~L~~L~l 178 (1009)
++|||++|.+.. +|..++.+++|++|+|++|.+. .+|..++++++|++|++++|.+.
T Consensus 84 ~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-------------------- 140 (328)
T 4fcg_A 84 VALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-------------------- 140 (328)
T ss_dssp CEEEEESSCCSS--CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--------------------
T ss_pred eEEEccCCCchh--cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--------------------
Confidence 555555555553 5555555666666666666655 55555666666666665555321
Q ss_pred CCccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCC--------CCCCCCCcEEECCCCCCCCCchhhhhcCCCCc
Q 036375 179 NRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSIT--------PVNLTSPAVLDLSLNHFNSLFPNWLVNISTLV 250 (1009)
Q Consensus 179 ~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--------~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~ 250 (1009)
. ++..+.++++|++|++++|.+.+.+|..+ +..+++|++|++++|.++ .+|..+.++++|+
T Consensus 141 ------~----lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~ 209 (328)
T 4fcg_A 141 ------A----LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK 209 (328)
T ss_dssp ------C----CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCC
T ss_pred ------c----CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCC
Confidence 1 23344455555555555555555554433 123555555555555555 4455566666666
Q ss_pred EEEccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccC
Q 036375 251 YVDLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFD 330 (1009)
Q Consensus 251 ~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 330 (1009)
+|++++|.+.+ +|..++.+++|++|++++|+ ..+.++..++.+++|++|++++|.+.+.+|..++++++|++|++++
T Consensus 210 ~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~--~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 210 SLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT--ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp EEEEESSCCCC-CCGGGGGCTTCCEEECTTCT--TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred EEEccCCCCCc-CchhhccCCCCCEEECcCCc--chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 66666666653 44456666666666666653 2333444444555555555555555556666666666666666666
Q ss_pred CcccccCchhhhcccCCCEEEcCCCc
Q 036375 331 KKVEGGIPSSIARLCYLKEFDLSGNN 356 (1009)
Q Consensus 331 n~~~~~~~~~l~~l~~L~~L~l~~n~ 356 (1009)
|.+.+.+|..++++++|+.+++..+.
T Consensus 287 n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCchhhccHHHhhccCceEEeCCHHH
Confidence 66666666666666666666655443
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.7e-29 Score=279.32 Aligned_cols=306 Identities=24% Similarity=0.347 Sum_probs=180.9
Q ss_pred CCCCcCCEEeCCCCCCCCCCCCcccCCCCCCceeecccCCCCccCCCCCCCCCCCCeeeCCCccccccCCCcccccCCCC
Q 036375 93 SSGSLLEYLDLSFNTFNDIPIPEFLGSLENLQYLNLSEAGFTGVVPSSLGNLHRLQYFDVSAELFALSADSLDWLTGLVS 172 (1009)
Q Consensus 93 ~~l~~L~~LdLs~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~l~~L~~L~~L~Ls~~~~~~~~~~~~~l~~l~~ 172 (1009)
..+++|++|+++++.+.. +| .+..+++|++|++++|.+.+ +|. +.++++|++|++++|.+.. ++.+.++++
T Consensus 41 ~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~----~~~~~~l~~ 111 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD----ISALQNLTN 111 (347)
T ss_dssp HHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC----CGGGTTCTT
T ss_pred hhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC----chHHcCCCc
Confidence 356778888888888876 44 37778888888888888774 333 7888888888888875432 234555556
Q ss_pred CCeEEcCCccCCCCcchhhhhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEE
Q 036375 173 LKHLAMNRVDLSLVGSEWLGILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYV 252 (1009)
Q Consensus 173 L~~L~l~~~~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 252 (1009)
|++|+++++.+... +. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 112 L~~L~l~~n~i~~~----~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L 182 (347)
T 4fmz_A 112 LRELYLNEDNISDI----SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182 (347)
T ss_dssp CSEEECTTSCCCCC----GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred CCEEECcCCcccCc----hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence 66666666555542 22 55566666666666644433332 2455555555555555554432 4555555555
Q ss_pred EccCCcCcccCCcccCCCCCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCccccCCCCCCEEEccCCc
Q 036375 253 DLSDCDLYGRIPIGFGELPNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVANMTSLTNFDLFDKK 332 (1009)
Q Consensus 253 ~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 332 (1009)
++++|.+.+..+ +..+++|++|++++ |.+.+..+ +..+++|++|++++|.
T Consensus 183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~--------------------------n~l~~~~~--~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 183 SLNYNQIEDISP--LASLTSLHYFTAYV--------------------------NQITDITP--VANMTRLNSLKIGNNK 232 (347)
T ss_dssp ECTTSCCCCCGG--GGGCTTCCEEECCS--------------------------SCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred EccCCccccccc--ccCCCccceeeccc--------------------------CCCCCCch--hhcCCcCCEEEccCCc
Confidence 555555443221 44455555555544 44443222 5555566666666665
Q ss_pred ccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcCcccCChhhcCCCCCCEEeCcC
Q 036375 333 VEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQLENLVELTLSY 412 (1009)
Q Consensus 333 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 412 (1009)
+.+..+ +..+++|++|++++|.+++. ..+. .+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 233 l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~----------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 233 ITDLSP--LANLSQLTWLEIGTNQISDI--NAVK----------DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCCC--GGGT----------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred cCCCcc--hhcCCCCCEEECCCCccCCC--hhHh----------cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcC
Confidence 553322 55566666666666655542 1222 456666666666666643 3466677777777777
Q ss_pred CcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccc
Q 036375 413 NLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLT 464 (1009)
Q Consensus 413 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 464 (1009)
|.+++..|..+..+++|++|++++|.+++..| +..+++|++|++++|.++
T Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77766666666677777777777777765544 566777777777777654
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.7e-29 Score=274.37 Aligned_cols=268 Identities=21% Similarity=0.298 Sum_probs=231.6
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
.+++.++++++.+. .+|..+ .+.+++|++++|++++..+..|.++++|++|++++|++++..|..+.++++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 47889999999887 677644 46899999999999998888999999999999999999988899999999999999
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccc--cCchhhhhcCcCCcEEEccCCc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG--NIPSLLGNGFVGLRILSLRSNA 750 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~ip~~l~~~l~~L~~L~L~~N~ 750 (1009)
+++|+++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.+.. ..+..+. .+++|+.|++++|.
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCc
Confidence 9999998 4555544 789999999999998888889999999999999999863 5555555 59999999999999
Q ss_pred ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375 751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF 830 (1009)
Q Consensus 751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 830 (1009)
++ .+|..+. ++|++|++++|++++..|..+..+++| +.
T Consensus 183 l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------------------------~~ 220 (330)
T 1xku_A 183 IT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL---------------------------------------AK 220 (330)
T ss_dssp CC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC---------------------------------------CE
T ss_pred cc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC---------------------------------------CE
Confidence 98 4665554 789999999999998888888887776 88
Q ss_pred EEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCC------CCCCeEe
Q 036375 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSL------SFLGYIN 904 (1009)
Q Consensus 831 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l------~~L~~L~ 904 (1009)
|+|++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|... ..|+.++
T Consensus 221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred EECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence 999999999888888999999999999999998 778889999999999999999998877777543 6788999
Q ss_pred CCCCcce
Q 036375 905 LSRNQLS 911 (1009)
Q Consensus 905 ls~N~l~ 911 (1009)
+++|++.
T Consensus 300 l~~N~~~ 306 (330)
T 1xku_A 300 LFSNPVQ 306 (330)
T ss_dssp CCSSSSC
T ss_pred eecCccc
Confidence 9999875
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=8.8e-33 Score=321.84 Aligned_cols=183 Identities=22% Similarity=0.259 Sum_probs=91.8
Q ss_pred CccEEEccCCcCCCcCCc---hhhcCCCCccEEEccCCcccccCCccccc-----CCCCCeEEccCCcCCcc----CcCc
Q 036375 594 EIELLDLSNNHFSGPIPQ---NISGSMPNLIFLSVSGNRLTGKIPGSIGE-----MQLLQVIDLSRNSISGS----ISSS 661 (1009)
Q Consensus 594 ~L~~L~Ls~n~l~~~ip~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~ 661 (1009)
+|++|++++|.+++.... ..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 455555555555432211 12234566777777776665443333322 34666666666666543 3445
Q ss_pred ccCCCCCCEEECCCCcCcccC-----CccccCCCCCCEEEccCccccCC----CchhhcCCCCCCEEECcCCcccccCch
Q 036375 662 IGNCTFLKVLDLSYSSLSGVI-----PASLGQLTRLQSLHLNNNKLTGN----LPSSFQNLTSLETLDLGNNRFSGNIPS 732 (1009)
Q Consensus 662 l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ip~ 732 (1009)
+..+++|++|++++|++++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 555666666666666665432 12222355666666666665532 344455556666666666655543333
Q ss_pred hhhh----cCcCCcEEEccCCccccc----CCcccCCCCCCCEEEccCCcCC
Q 036375 733 LLGN----GFVGLRILSLRSNAFSGE----IPSKLSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 733 ~l~~----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 776 (1009)
.+.. ..++|+.|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 2221 113455555555554432 2333344444444444444444
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.1e-32 Score=315.39 Aligned_cols=284 Identities=21% Similarity=0.184 Sum_probs=182.4
Q ss_pred ccEEEccCCcCCC----cCCchhhcCCCCccEEEccCCcccccCCccccc-----CCCCCeEEccCCcCCccC----cCc
Q 036375 595 IELLDLSNNHFSG----PIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE-----MQLLQVIDLSRNSISGSI----SSS 661 (1009)
Q Consensus 595 L~~L~Ls~n~l~~----~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~----p~~ 661 (1009)
|++|++++|.+++ .++ ..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++.. +..
T Consensus 87 L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 4445555554442 122 23345666777777776665443333322 346777777777776532 445
Q ss_pred ccCCCCCCEEECCCCcCcccCCcccc-----CCCCCCEEEccCccccCC----CchhhcCCCCCCEEECcCCcccccCc-
Q 036375 662 IGNCTFLKVLDLSYSSLSGVIPASLG-----QLTRLQSLHLNNNKLTGN----LPSSFQNLTSLETLDLGNNRFSGNIP- 731 (1009)
Q Consensus 662 l~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ip- 731 (1009)
+..+++|++|++++|++++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 56667777777777777655443333 245777788877777753 46666777788888888887764322
Q ss_pred ---hhhhhcCcCCcEEEccCCccccc----CCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhcccc
Q 036375 732 ---SLLGNGFVGLRILSLRSNAFSGE----IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRY 804 (1009)
Q Consensus 732 ---~~l~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~ 804 (1009)
..+...+++|+.|++++|.+++. ++..+..+++|++|++++|++++..+..+...-.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~---------------- 309 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL---------------- 309 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT----------------
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc----------------
Confidence 22222367788888888877753 5666667788888888888776544433333210
Q ss_pred ccceeeceEEEeecCCCCCCCCceeEEEccCCccCCC----CCccccCcCCCCeEEccCCcccccCCCCccC-----CCC
Q 036375 805 RGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGD----FPTQLTKLVGLVVLNLSRNHIGGQIPENISG-----LHQ 875 (1009)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~ 875 (1009)
.....++.|+|++|.+++. +|..+..+++|++|+|++|++++..+..+.. .++
T Consensus 310 ------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 310 ------------------EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp ------------------STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred ------------------cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 0001337788888888765 4666677788888888888887765554443 568
Q ss_pred CCEEeCCCCcCCC----CCcccccCCCCCCeEeCCCCcceec
Q 036375 876 LASLDLSSNNLSG----GIPSSLSSLSFLGYINLSRNQLSGK 913 (1009)
Q Consensus 876 L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~ls~N~l~g~ 913 (1009)
|++|++++|.+++ .+|..+..+++|++||+++|++++.
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 8888888888886 6777888888888888888887654
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=7.8e-29 Score=274.46 Aligned_cols=267 Identities=21% Similarity=0.322 Sum_probs=227.1
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
.+++.++++++.+. .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|++++..|..+.++++|++|+
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 46889999999887 777654 46899999999999988888999999999999999999988899999999999999
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccc--cCchhhhhcCcCCcEEEccCCc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSG--NIPSLLGNGFVGLRILSLRSNA 750 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~ip~~l~~~l~~L~~L~L~~N~ 750 (1009)
+++|+++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.++. ..|..+. .+ +|+.|++++|+
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD-GL-KLNYLRISEAK 183 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC-SC-CCSCCBCCSSB
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc-CC-ccCEEECcCCC
Confidence 9999998 4555444 899999999999997777779999999999999999863 4555544 35 89999999999
Q ss_pred ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375 751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF 830 (1009)
Q Consensus 751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 830 (1009)
+++ +|..+. ++|++|++++|++++..|..+..+++| +.
T Consensus 184 l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L---------------------------------------~~ 221 (332)
T 2ft3_A 184 LTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKL---------------------------------------YR 221 (332)
T ss_dssp CSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTC---------------------------------------SC
T ss_pred CCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCC---------------------------------------CE
Confidence 985 666554 789999999999998888888877776 77
Q ss_pred EEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCC------CCCCeEe
Q 036375 831 IDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSL------SFLGYIN 904 (1009)
Q Consensus 831 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l------~~L~~L~ 904 (1009)
|+|++|++++..|..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|++++..+..|... ..|+.++
T Consensus 222 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred EECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence 899999999888888999999999999999998 678889999999999999999998877777653 5688999
Q ss_pred CCCCcce
Q 036375 905 LSRNQLS 911 (1009)
Q Consensus 905 ls~N~l~ 911 (1009)
+++|++.
T Consensus 301 l~~N~~~ 307 (332)
T 2ft3_A 301 LFNNPVP 307 (332)
T ss_dssp CCSSSSC
T ss_pred eecCccc
Confidence 9999876
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.7e-29 Score=278.08 Aligned_cols=279 Identities=22% Similarity=0.232 Sum_probs=233.6
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
+.....+++++.++ .+|..+ .++|++|++++|++++..+..+.++++|++|++++|++++..|..|.++++|++|+
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 34455788888887 778754 35899999999999988888899999999999999999988888999999999999
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccCCCc-hhhcCCCCCCEEECcCCc-ccccCchhhhhcCcCCcEEEccCCc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP-SSFQNLTSLETLDLGNNR-FSGNIPSLLGNGFVGLRILSLRSNA 750 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~-l~~~ip~~l~~~l~~L~~L~L~~N~ 750 (1009)
+++|++++..+..|+.+++|++|++++|++++..+ ..+..+++|++|++++|. +.+..|..+. .+++|+.|++++|+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCC
Confidence 99999997666668999999999999999995444 478999999999999995 5533344454 59999999999999
Q ss_pred ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375 751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF 830 (1009)
Q Consensus 751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 830 (1009)
+++..|..+..+++|++|++++|+++...+..+..+++| +.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L---------------------------------------~~ 226 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV---------------------------------------EC 226 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE---------------------------------------EE
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc---------------------------------------cE
Confidence 999889999999999999999999864333334445555 89
Q ss_pred EEccCCccCCCCCcccc---CcCCCCeEEccCCcccc----cCCCCccCCCCCCEEeCCCCcCCCCCccc-ccCCCCCCe
Q 036375 831 IDLSGNNLHGDFPTQLT---KLVGLVVLNLSRNHIGG----QIPENISGLHQLASLDLSSNNLSGGIPSS-LSSLSFLGY 902 (1009)
Q Consensus 831 L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~ 902 (1009)
|+|++|.+++..+..+. ....++.++|++|.+++ .+|+.+.++++|++||+++|+++. +|.. |+.+++|++
T Consensus 227 L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQK 305 (353)
T ss_dssp EEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred EECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCE
Confidence 99999999987766544 46778899999999987 478889999999999999999995 5555 699999999
Q ss_pred EeCCCCcceecCCC
Q 036375 903 INLSRNQLSGKIPF 916 (1009)
Q Consensus 903 L~ls~N~l~g~ip~ 916 (1009)
|++++|++++.+|.
T Consensus 306 L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 306 IWLHTNPWDCSCPR 319 (353)
T ss_dssp EECCSSCBCCCHHH
T ss_pred EEeeCCCccCcCCC
Confidence 99999999998773
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4.8e-31 Score=317.63 Aligned_cols=452 Identities=13% Similarity=0.060 Sum_probs=239.3
Q ss_pred CCCccceeecCCCCcEEEEecCCCCC--CCCCCCCCCcCCEEeCCCCCCC---CCCCCcccC------------CCCCCc
Q 036375 62 CCQWHGISCDDDTGAIVAINLGNPYH--VVNSDSSGSLLEYLDLSFNTFN---DIPIPEFLG------------SLENLQ 124 (1009)
Q Consensus 62 ~c~w~gv~c~~~~~~v~~l~l~~~~g--i~~~l~~l~~L~~LdLs~~~~~---~~~lp~~i~------------~l~~L~ 124 (1009)
|++|.++.+... +. +.+...+. .+..+.++++|++|+|+++... + .+|..++ .+++|+
T Consensus 41 ck~W~~~~~~~~--~~--l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~L~ 115 (592)
T 3ogk_B 41 CRRWFKIDSETR--EH--VTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVTEISNNLRQLK 115 (592)
T ss_dssp CHHHHHHHHHHC--CE--EEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred hHHHHHhhhccc--cE--EEEeeccccChHHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHHHHHhhCCCCC
Confidence 558998865322 22 22333222 2234457788999999875421 1 1232222 678888
Q ss_pred eeecccCCCCccCCCCCCCC--CCCCeeeCCCccccccCCCcccc-cCCCCCCeEEcCCccCCCCcch-hhhhhcCCCCc
Q 036375 125 YLNLSEAGFTGVVPSSLGNL--HRLQYFDVSAELFALSADSLDWL-TGLVSLKHLAMNRVDLSLVGSE-WLGILKNLPNL 200 (1009)
Q Consensus 125 ~L~Ls~~~~~~~lp~~l~~L--~~L~~L~Ls~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~l~~L 200 (1009)
+|+|++|.+.+..+..+++. .+|++|++++|.. .....+..+ .++++|++|+++++.+++.+.. +......+++|
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L 194 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred eEEeeccEecHHHHHHHHHhccccCcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence 88888887776655556553 3488888887741 111122222 2467777777777766554333 23344567777
Q ss_pred cEEEcCCCcCCCC----CCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCc---ccCCcccCCCCCC
Q 036375 201 TELHLSVCGLTGS----ITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLY---GRIPIGFGELPNL 273 (1009)
Q Consensus 201 ~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~---~~~p~~l~~l~~L 273 (1009)
++|++++|.+.+. ++. ...++++|++|++++|.+.+ +|..+..+++|++|+++.+... +..+..+..+++|
T Consensus 195 ~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 195 EVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred cEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 7777777766521 111 12456677777777766665 4566667777777777653322 2333455666667
Q ss_pred CEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCC-ccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEc
Q 036375 274 QYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLP-SSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDL 352 (1009)
Q Consensus 274 ~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 352 (1009)
+.|+++++ ....++..+..+++|++|++++|.+.+... ..+..+++|++|+++++...+.++.....+++|++|++
T Consensus 273 ~~L~l~~~---~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 273 CRLGLSYM---GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp CEEEETTC---CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccCcccc---chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 77766653 234455555666677777777666544322 23456666777766633222233333455666666666
Q ss_pred CC-----------CcCCCCCCcc-ccccccccCCCCCCCCCcEEECcCCcCcccCChhhcC-CCCCCEEeCc----CCcc
Q 036375 353 SG-----------NNLTGSLPEI-LQGTDLCVSSNSPLPSLISMRLGNNHLKGKLPEWLSQ-LENLVELTLS----YNLL 415 (1009)
Q Consensus 353 ~~-----------n~l~~~~~~~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls----~n~l 415 (1009)
++ +.+++..... .. .+++|++|+++.+.+++..+..+.. +++|++|+++ .|.+
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~----------~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQ----------GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHH----------HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred ecCccccccccccCccCHHHHHHHHh----------hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 62 2333221111 11 3556666666555555544444443 5566666664 3344
Q ss_pred ccc-----CCCCCCCCCCCcEEeCCCCc--CCCCCCcccC-CCCCCCEEEccCcccccccchhhhccCCCCcEEeCCCCc
Q 036375 416 QGP-----IPASLGNLKNLTKLNLPGNQ--LNGTLPETLG-SLPELSVLDVSSNSLTGIISEIHFSRLSKLKFLGLSSNS 487 (1009)
Q Consensus 416 ~~~-----~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 487 (1009)
++. ++..+.++++|++|+++.|. +++..+..+. .+++|++|++++|.+++......+..+++|++|++++|+
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 431 11123345555565554432 3322222222 245555555555555442222233445555555555554
Q ss_pred ccccCCCCCCCCccccEEecccCcCCCC-CCcccccCCCccEEEccCCcccCCCCchhhhccCcccEEEecc
Q 036375 488 FILNVSSSWIPPFQVQSLNMRSCQLGPS-FPSWLKTQQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSL 558 (1009)
Q Consensus 488 l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~ 558 (1009)
+ +.. .+.....+++|++|++++|++++.....+...++.+....+..
T Consensus 500 l------------------------~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 500 F------------------------SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp C------------------------BHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred C------------------------cHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 3 211 2233345666777777777766554444444455555544443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4e-28 Score=265.58 Aligned_cols=249 Identities=25% Similarity=0.339 Sum_probs=136.1
Q ss_pred cEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCcc--CcCcccCCCCCCEEEC
Q 036375 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS--ISSSIGNCTFLKVLDL 673 (1009)
Q Consensus 596 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L 673 (1009)
+.++++++.++ .+|..+ .+++++|++++|+++...+..|.++++|++|++++|+++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45666666665 555432 24566666666666644444455666666666666665522 2344445556666666
Q ss_pred CCCcCcccCCccccCCCCCCEEEccCccccCCCc-hhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375 674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLP-SSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS 752 (1009)
Q Consensus 674 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~ 752 (1009)
++|.+++ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.++
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEG
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccc
Confidence 6665552 34445555555555555555554333 3455555555555555555544333333 2445555555555444
Q ss_pred c-cCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEE
Q 036375 753 G-EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFI 831 (1009)
Q Consensus 753 ~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 831 (1009)
+ .+|..+..+++|++ |
T Consensus 164 ~~~~~~~~~~l~~L~~---------------------------------------------------------------L 180 (306)
T 2z66_A 164 ENFLPDIFTELRNLTF---------------------------------------------------------------L 180 (306)
T ss_dssp GGEECSCCTTCTTCCE---------------------------------------------------------------E
T ss_pred cccchhHHhhCcCCCE---------------------------------------------------------------E
Confidence 3 34444444444444 4
Q ss_pred EccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC-CCCeEeCCCCcc
Q 036375 832 DLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS-FLGYINLSRNQL 910 (1009)
Q Consensus 832 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l 910 (1009)
+|++|++++..|..+..+++|++|+|++|++++..+..+..+++|++||+++|++++.+|..+..++ +|++|++++|++
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 5555555544555555555666666666666655555566666666666666666666666666653 666666666666
Q ss_pred eec
Q 036375 911 SGK 913 (1009)
Q Consensus 911 ~g~ 913 (1009)
++.
T Consensus 261 ~~~ 263 (306)
T 2z66_A 261 ACT 263 (306)
T ss_dssp ECS
T ss_pred ecc
Confidence 554
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.4e-28 Score=265.54 Aligned_cols=224 Identities=22% Similarity=0.307 Sum_probs=159.1
Q ss_pred CCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECc
Q 036375 643 LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722 (1009)
Q Consensus 643 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 722 (1009)
.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 3444444444444 33334444444444444444444 44444444444444444444444 344444444455555555
Q ss_pred CCcccccCchhhh--------hcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccc
Q 036375 723 NNRFSGNIPSLLG--------NGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQN 794 (1009)
Q Consensus 723 ~N~l~~~ip~~l~--------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~ 794 (1009)
+|++.+.+|..+. .++++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|..++.+++|
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L----- 231 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL----- 231 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC-----
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC-----
Confidence 4444444444332 14788888888888887 778888888889999999998885 56667777766
Q ss_pred hhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCC
Q 036375 795 IVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLH 874 (1009)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 874 (1009)
+.|+|++|++.+.+|..++++++|+.|+|++|++.+.+|..+++++
T Consensus 232 ----------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 232 ----------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp ----------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred ----------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 8889999999999999999999999999999999999999999999
Q ss_pred CCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcc
Q 036375 875 QLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQL 910 (1009)
Q Consensus 875 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 910 (1009)
+|++|+|++|++.+.+|..++++++|+.++++.|.+
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 999999999999999999999999999999987755
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-27 Score=262.01 Aligned_cols=249 Identities=22% Similarity=0.277 Sum_probs=194.5
Q ss_pred CeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccC--CCchhhcCCCCCCEEECc
Q 036375 645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTG--NLPSSFQNLTSLETLDLG 722 (1009)
Q Consensus 645 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~ 722 (1009)
+.++.+++.++ .+|..+. ++|++|++++|+++...+..|..+++|++|++++|+++. ..|..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666665 3343332 467777777777775544556777777777777777763 235666677788888888
Q ss_pred CCcccccCchhhhhcCcCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhc
Q 036375 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP-SKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLF 801 (1009)
Q Consensus 723 ~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 801 (1009)
+|.+. .+|..+. .+++|+.|++++|++++..+ ..+..+++|++|++++|++++..|..+..+++|
T Consensus 87 ~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------ 152 (306)
T 2z66_A 87 FNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------------ 152 (306)
T ss_dssp SCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC------------
T ss_pred CCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC------------
Confidence 88776 5666554 47888888888888875544 567888888999999998888888777777766
Q ss_pred cccccceeeceEEEeecCCCCCCCCceeEEEccCCccCC-CCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEe
Q 036375 802 GRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHG-DFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLD 880 (1009)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 880 (1009)
+.|+|++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 153 ---------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 153 ---------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp ---------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ---------------------------CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 788999999987 6788999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCCC-CCC-CcccCCcCCCCCCCCCC
Q 036375 881 LSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE-GHM-TTFDASSFAGNPGLCGD 937 (1009)
Q Consensus 881 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~-~~~~~~~~~~n~~lc~~ 937 (1009)
+++|++++..+..+..+++|++||+++|++++.+|.. ..+ ..+....+.+|+.-|.+
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 9999999988889999999999999999999988864 222 35556678899887764
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.3e-29 Score=301.50 Aligned_cols=154 Identities=13% Similarity=0.076 Sum_probs=80.3
Q ss_pred CCCCCCEEEccCCccccc----CchhhhcccCCCEEEcCCCcCCCCC----CccccccccccCCCCCCCCCcEEECcCCc
Q 036375 319 NMTSLTNFDLFDKKVEGG----IPSSIARLCYLKEFDLSGNNLTGSL----PEILQGTDLCVSSNSPLPSLISMRLGNNH 390 (1009)
Q Consensus 319 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 390 (1009)
++++|++|++++|.+.+. ++..+..+++|++|++++|.+++.. +..+. .+++|++|++++|.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~----------~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR----------NCRSLVSVKVGDFE 231 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH----------HCTTCCEEECSSCB
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh----------hCCCCcEEeccCcc
Confidence 556666666666655444 2333445566666666666554222 12222 35566666666666
Q ss_pred CcccCChhhcCCCCCCEEeCcCCccc---ccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCccccccc
Q 036375 391 LKGKLPEWLSQLENLVELTLSYNLLQ---GPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGII 467 (1009)
Q Consensus 391 l~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 467 (1009)
+.+ ++..+..+++|++|+++.+... ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.+++..
T Consensus 232 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp GGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred HHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence 553 4455666666666666543221 12233455566666666665432 244555555666666666666654333
Q ss_pred chhhhccCCCCcEEeCC
Q 036375 468 SEIHFSRLSKLKFLGLS 484 (1009)
Q Consensus 468 ~~~~~~~l~~L~~L~L~ 484 (1009)
....+..+++|++|+++
T Consensus 310 ~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETR 326 (592)
T ss_dssp HHHHHTTCTTCCEEEEE
T ss_pred HHHHHHhCcCCCEEecc
Confidence 22234555555555554
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.4e-28 Score=270.17 Aligned_cols=261 Identities=22% Similarity=0.225 Sum_probs=219.6
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
.++++|++++|.++ .+|...+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 68999999999998 56666678899999999999999999899999999999999999999977776799999999999
Q ss_pred CCCCcCcccCC-ccccCCCCCCEEEccCc-cccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCc
Q 036375 673 LSYSSLSGVIP-ASLGQLTRLQSLHLNNN-KLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNA 750 (1009)
Q Consensus 673 Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~ 750 (1009)
+++|++++..+ ..+..+++|++|++++| .+.+..+..|..+++|++|++++|.+++..|..+. .+++|+.|++++|+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSC
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCc
Confidence 99999996544 47899999999999999 47777778899999999999999999988888877 49999999999999
Q ss_pred ccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeE
Q 036375 751 FSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHF 830 (1009)
Q Consensus 751 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 830 (1009)
+....+..+..+++|+.|++++|++++..+..+...... ..++.
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~------------------------------------~~l~~ 253 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN------------------------------------SLIKK 253 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CC------------------------------------CCCCE
T ss_pred cccchhhhhhhcccccEEECCCCcccccccccccccccc------------------------------------chhhc
Confidence 974433345568999999999999998766544332211 12367
Q ss_pred EEccCCccCC----CCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCc
Q 036375 831 IDLSGNNLHG----DFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIP 891 (1009)
Q Consensus 831 L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 891 (1009)
++|++|.+++ .+|..+.++++|+.|+|++|+++...+..|+++++|++|++++|.+++..|
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 7888888876 478889999999999999999995555557999999999999999998765
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.5e-26 Score=267.56 Aligned_cols=249 Identities=24% Similarity=0.305 Sum_probs=151.5
Q ss_pred ccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECC
Q 036375 595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLS 674 (1009)
Q Consensus 595 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 674 (1009)
...++.++..++ .+|..+ .+++++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456777776666 556433 2456666666666666666666666666666666666665555566666666666666
Q ss_pred CCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccccc
Q 036375 675 YSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE 754 (1009)
Q Consensus 675 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~ 754 (1009)
+|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|...+.+|..
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~--------------------- 190 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG--------------------- 190 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---------------------
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh---------------------
Confidence 66666555555555666666666666655444445555555555555554333344433
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEcc
Q 036375 755 IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS 834 (1009)
Q Consensus 755 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 834 (1009)
.+..+++|++|++++|++++. | .+..+++| +.|+|+
T Consensus 191 ---~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L---------------------------------------~~L~Ls 226 (452)
T 3zyi_A 191 ---AFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGL---------------------------------------EELEMS 226 (452)
T ss_dssp ---TTTTCTTCCEEECTTSCCSSC-C-CCTTCTTC---------------------------------------CEEECT
T ss_pred ---hccCCCCCCEEECCCCccccc-c-cccccccc---------------------------------------cEEECc
Confidence 344555555555555555432 2 12233332 566666
Q ss_pred CCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375 835 GNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912 (1009)
Q Consensus 835 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 912 (1009)
+|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|++|++++|++..
T Consensus 227 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 666666666667777777777777777777777777777777777777777776666667777777777777777654
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.1e-26 Score=268.79 Aligned_cols=210 Identities=20% Similarity=0.227 Sum_probs=161.0
Q ss_pred cCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCc
Q 036375 574 FADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNS 653 (1009)
Q Consensus 574 l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 653 (1009)
...++.++..++........+++.|++++|.+++. +...+..+++|++|++++|++++..+..|.++++|++|++++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 45667777766643222347899999999999954 44566789999999999999999999999999999999999999
Q ss_pred CCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCcc-ccCCCchhhcCCCCCCEEECcCCcccccCch
Q 036375 654 ISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK-LTGNLPSSFQNLTSLETLDLGNNRFSGNIPS 732 (1009)
Q Consensus 654 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~ 732 (1009)
+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|. +....+..|..+++|++|++++|.++ .+|.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc
Confidence 998888889999999999999999998888899999999999999954 55444456889999999999999887 4553
Q ss_pred hhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhh
Q 036375 733 LLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLK 787 (1009)
Q Consensus 733 ~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 787 (1009)
+. .+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..|.+++
T Consensus 214 -~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 214 -LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp -CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred -cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 22 355666666666666655555555555555555555555544444433333
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=267.71 Aligned_cols=249 Identities=25% Similarity=0.313 Sum_probs=152.8
Q ss_pred ccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECC
Q 036375 595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLS 674 (1009)
Q Consensus 595 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 674 (1009)
...++.++..++ .+|..+ .++++.|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456677776666 666543 2566677777777666666666666667777777666666666666666666666666
Q ss_pred CCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccccc
Q 036375 675 YSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE 754 (1009)
Q Consensus 675 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~ 754 (1009)
+|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|...+.++...+.++++|+.|++++|+++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 666665555566666666666666666665555566666666666666644433444433333555555555555444 2
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEcc
Q 036375 755 IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS 834 (1009)
Q Consensus 755 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 834 (1009)
+| .+..+++| +.|||+
T Consensus 200 ~~-~~~~l~~L---------------------------------------------------------------~~L~Ls 215 (440)
T 3zyj_A 200 IP-NLTPLIKL---------------------------------------------------------------DELDLS 215 (440)
T ss_dssp CC-CCTTCSSC---------------------------------------------------------------CEEECT
T ss_pred cc-ccCCCccc---------------------------------------------------------------CEEECC
Confidence 22 23334444 555555
Q ss_pred CCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375 835 GNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912 (1009)
Q Consensus 835 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 912 (1009)
+|++++..|..|.++++|+.|+|++|++++..+..|.++++|+.|||++|++++..+..|..+++|++|++++|++..
T Consensus 216 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 555555555666666666666666666666666666666666666666666666666666666666666666666643
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.9e-26 Score=265.69 Aligned_cols=248 Identities=25% Similarity=0.311 Sum_probs=165.9
Q ss_pred CeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCC
Q 036375 645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724 (1009)
Q Consensus 645 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 724 (1009)
+.++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34444444444 2333332 34555555555555555555555555555555555555555555555555555555555
Q ss_pred cccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCCh-hhhhhhhhhhccchhhhhhccc
Q 036375 725 RFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPG-SVGDLKAMAHVQNIVKYLLFGR 803 (1009)
Q Consensus 725 ~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~ 803 (1009)
+++ .+|...+..+++|+.|++++|++++..+..|..+++|++|++++|+..+.+|. .|.++++|
T Consensus 123 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-------------- 187 (440)
T 3zyj_A 123 RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-------------- 187 (440)
T ss_dssp CCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC--------------
T ss_pred cCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc--------------
Confidence 555 33332222355566666666665544455566666666666666443333333 45555544
Q ss_pred cccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCC
Q 036375 804 YRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSS 883 (1009)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 883 (1009)
+.|+|++|+++ .+| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus 188 -------------------------~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 188 -------------------------RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp -------------------------CEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred -------------------------CeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 66777777776 344 478899999999999999999999999999999999999
Q ss_pred CcCCCCCcccccCCCCCCeEeCCCCcceecCCCC-CCCCcccCCcCCCCCCCCCC
Q 036375 884 NNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPFE-GHMTTFDASSFAGNPGLCGD 937 (1009)
Q Consensus 884 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~~lc~~ 937 (1009)
|++++..|..|.++++|++||+++|++++..|.. ..+..+....+.+||+.|.+
T Consensus 241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 9999999999999999999999999999766543 34556666778999999965
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=7e-27 Score=252.74 Aligned_cols=229 Identities=25% Similarity=0.269 Sum_probs=156.8
Q ss_pred CeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCC
Q 036375 645 QVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724 (1009)
Q Consensus 645 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 724 (1009)
++++.+++.++. +|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 345555555542 23222 245566666666666555555566666666666666666555556666666666666666
Q ss_pred c-ccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccc
Q 036375 725 R-FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGR 803 (1009)
Q Consensus 725 ~-l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~ 803 (1009)
. +.+..|..+. .+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..++++++|
T Consensus 91 ~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------- 155 (285)
T 1ozn_A 91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-------------- 155 (285)
T ss_dssp TTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred CCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------
Confidence 5 4422233333 36666666666666666556667777777777777777776655556666655
Q ss_pred cccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCC
Q 036375 804 YRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSS 883 (1009)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 883 (1009)
+.|+|++|++++..+..+..+++|+.|++++|++++..|..|+++++|+.|++++
T Consensus 156 -------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 156 -------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp -------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred -------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 6777777777766666788888889999999999888888888899999999999
Q ss_pred CcCCCCCcccccCCCCCCeEeCCCCcceecCCC
Q 036375 884 NNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF 916 (1009)
Q Consensus 884 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 916 (1009)
|++++..|..+..+++|++|++++|++++..+.
T Consensus 211 n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp SCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred CcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 999987777888889999999999988876553
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.8e-27 Score=254.04 Aligned_cols=252 Identities=22% Similarity=0.263 Sum_probs=139.7
Q ss_pred cEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCC
Q 036375 596 ELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY 675 (1009)
Q Consensus 596 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 675 (1009)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666665 455422 34666666666666665555666666666666666666655556666666666666666
Q ss_pred Cc-CcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccccc
Q 036375 676 SS-LSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE 754 (1009)
Q Consensus 676 N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~ 754 (1009)
|+ +.+..|..|..+++|++|++++|++++..|..+..+++|++|++++|.++ +.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~ 144 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-------------------------AL 144 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------CC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-------------------------cc
Confidence 65 55444555566666666666666665555555555555555555555555 33
Q ss_pred CCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEcc
Q 036375 755 IPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS 834 (1009)
Q Consensus 755 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 834 (1009)
.+..+..+++|++|++++|++++..+..+..+++| +.|+|+
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------------------------~~L~l~ 185 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL---------------------------------------DRLLLH 185 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC---------------------------------------CEEECC
T ss_pred CHhHhccCCCccEEECCCCcccccCHHHhcCcccc---------------------------------------CEEECC
Confidence 33334444444444444444443333334443333 445555
Q ss_pred CCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecC
Q 036375 835 GNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKI 914 (1009)
Q Consensus 835 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 914 (1009)
+|.+++..|..+.++++|+.|++++|++++.+++.+..+++|++|++++|.+....+.. .-...++.++.+.|.+.+..
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEE
T ss_pred CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCC
Confidence 55555555555555666666666666666555555666666666666666665433321 11122334445566666666
Q ss_pred CC
Q 036375 915 PF 916 (1009)
Q Consensus 915 p~ 916 (1009)
|.
T Consensus 265 p~ 266 (285)
T 1ozn_A 265 PQ 266 (285)
T ss_dssp SG
T ss_pred ch
Confidence 64
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.1e-28 Score=270.11 Aligned_cols=204 Identities=25% Similarity=0.291 Sum_probs=128.5
Q ss_pred CCCCCCEEECCCCcCcccCCccc--cCCCCCCEEEccCccccCCCchhhcCC-----CCCCEEECcCCcccccCchhhhh
Q 036375 664 NCTFLKVLDLSYSSLSGVIPASL--GQLTRLQSLHLNNNKLTGNLPSSFQNL-----TSLETLDLGNNRFSGNIPSLLGN 736 (1009)
Q Consensus 664 ~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~ip~~l~~ 736 (1009)
++++|++|++++|++++.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..|..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~- 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR- 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-
Confidence 34455555555555554444443 4455555555555555544 4444443 5555555555555533333333
Q ss_pred cCcCCcEEEccCCccccc--CCccc--CCCCCCCEEEccCCcCCCC--CCh-hhhhhhhhhhccchhhhhhcccccccee
Q 036375 737 GFVGLRILSLRSNAFSGE--IPSKL--SNLSSLQVLDLAENNLTGS--IPG-SVGDLKAMAHVQNIVKYLLFGRYRGIYY 809 (1009)
Q Consensus 737 ~l~~L~~L~L~~N~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~~--~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 809 (1009)
.+++|+.|++++|++.+. .|..+ ..+++|++|++++|++++. ++. .+.++++|
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L-------------------- 230 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL-------------------- 230 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC--------------------
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC--------------------
Confidence 355555555555555443 22223 6677778888888877631 111 12233333
Q ss_pred eceEEEeecCCCCCCCCceeEEEccCCccCCCCC-ccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCC
Q 036375 810 EENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFP-TQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSG 888 (1009)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 888 (1009)
+.|||++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++|||++|++++
T Consensus 231 -------------------~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 231 -------------------QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp -------------------SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS
T ss_pred -------------------CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC
Confidence 778888888888775 45667888999999999998 6777776 889999999999987
Q ss_pred CCcccccCCCCCCeEeCCCCcceec
Q 036375 889 GIPSSLSSLSFLGYINLSRNQLSGK 913 (1009)
Q Consensus 889 ~ip~~l~~l~~L~~L~ls~N~l~g~ 913 (1009)
. |. +..+++|++|++++|+++++
T Consensus 289 ~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 289 N-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp C-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred C-hh-HhhCCCCCEEeccCCCCCCC
Confidence 6 66 88899999999999988763
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=6e-28 Score=265.05 Aligned_cols=267 Identities=19% Similarity=0.221 Sum_probs=206.7
Q ss_pred ccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECC
Q 036375 595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLS 674 (1009)
Q Consensus 595 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 674 (1009)
++..+++.+.+. ..+...+..+++|++|++++|++++..|..|.++++|++|++++|++++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 455566666664 4444566677788899999888888877888888889999999988887655 8888889999999
Q ss_pred CCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccccc
Q 036375 675 YSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE 754 (1009)
Q Consensus 675 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~ 754 (1009)
+|++++.. ..++|++|++++|++++..+. .+++|++|++++|++++..|..+. .+++|+.|++++|.+++.
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcc
Confidence 98887543 337888899999888865544 357788889999888855554554 488888899998888877
Q ss_pred CCcccC-CCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEc
Q 036375 755 IPSKLS-NLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDL 833 (1009)
Q Consensus 755 ~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L 833 (1009)
.+..+. .+++|++|++++|++++. |.. ..+++ ++.|+|
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~l~~---------------------------------------L~~L~L 198 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KGQ-VVFAK---------------------------------------LKTLDL 198 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-ECC-CCCTT---------------------------------------CCEEEC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-ccc-ccccc---------------------------------------CCEEEC
Confidence 776664 688899999999988754 211 11333 388899
Q ss_pred cCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCC-CCCcccccCCCCCCeEeCC-CCcce
Q 036375 834 SGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLS-GGIPSSLSSLSFLGYINLS-RNQLS 911 (1009)
Q Consensus 834 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~ls-~N~l~ 911 (1009)
++|++++. |..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|.++ +.+|..+..++.|++++++ .+.+.
T Consensus 199 s~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 199 SSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 99998864 4458889999999999999984 6777888999999999999998 7888888889999999998 44577
Q ss_pred ecCCC
Q 036375 912 GKIPF 916 (1009)
Q Consensus 912 g~ip~ 916 (1009)
|..|.
T Consensus 277 ~~~~~ 281 (317)
T 3o53_A 277 GQNEE 281 (317)
T ss_dssp SSSSC
T ss_pred CCchh
Confidence 77664
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=9.2e-28 Score=262.92 Aligned_cols=247 Identities=24% Similarity=0.258 Sum_probs=191.4
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCccc-ccCCcccc-------cCCCCCeEEccCCcCCccCcCcc--
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLT-GKIPGSIG-------EMQLLQVIDLSRNSISGSISSSI-- 662 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~l-- 662 (1009)
.+|+.+++++|.+ .+|..+... |++|++++|+++ ..+|..+. ++++|++|++++|++++.+|..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 4577777888887 677666543 888888888884 45555554 68888888888888888888776
Q ss_pred cCCCCCCEEECCCCcCcccCCccccCC-----CCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccC--chhh-
Q 036375 663 GNCTFLKVLDLSYSSLSGVIPASLGQL-----TRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNI--PSLL- 734 (1009)
Q Consensus 663 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~i--p~~l- 734 (1009)
..+++|++|++++|++++. |..++.+ ++|++|++++|++++..|..|..+++|++|++++|++.+.+ |..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8888888888888888877 7777776 88888999888888877788888888999999888877653 3333
Q ss_pred hhcCcCCcEEEccCCcccc--cCC-cccCCCCCCCEEEccCCcCCCCCC-hhhhhhhhhhhccchhhhhhccccccceee
Q 036375 735 GNGFVGLRILSLRSNAFSG--EIP-SKLSNLSSLQVLDLAENNLTGSIP-GSVGDLKAMAHVQNIVKYLLFGRYRGIYYE 810 (1009)
Q Consensus 735 ~~~l~~L~~L~L~~N~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ 810 (1009)
+..+++|+.|++++|++++ .++ ..+..+++|++|++++|++++.+| ..+..+++|
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L--------------------- 255 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL--------------------- 255 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC---------------------
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC---------------------
Confidence 1358888999999988873 223 334577889999999999888765 233334444
Q ss_pred ceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCC
Q 036375 811 ENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGG 889 (1009)
Q Consensus 811 ~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 889 (1009)
+.|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|++++.
T Consensus 256 ------------------~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 256 ------------------NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp ------------------CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred ------------------CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 88899999998 7777776 8899999999999977 55 88999999999999999864
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8.6e-25 Score=258.50 Aligned_cols=241 Identities=29% Similarity=0.322 Sum_probs=143.3
Q ss_pred CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEEC
Q 036375 594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL 673 (1009)
Q Consensus 594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 673 (1009)
+|+.|++++|.++ .+|. .+++|++|++++|++++. |. .+++|++|++++|++++. |. .+++|+.|++
T Consensus 62 ~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L 128 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWI 128 (622)
T ss_dssp TCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEEC
T ss_pred CCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEEC
Confidence 4555555555554 3443 345566666666665532 22 455666666666666543 22 3456666666
Q ss_pred CCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccc
Q 036375 674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG 753 (1009)
Q Consensus 674 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~ 753 (1009)
++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|.++ .+|. .+++|+.|++++|.+++
T Consensus 129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 129 FGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLPM----LPSGLQELSVSDNQLAS 195 (622)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred CCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCcc----cCCCCcEEECCCCCCCC
Confidence 6666664 3332 3566666666666664 332 2355666666666666 4551 35666677777766663
Q ss_pred cCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEc
Q 036375 754 EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDL 833 (1009)
Q Consensus 754 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L 833 (1009)
+|.. .++|+.|++++|+++. +|..+ ++ ++.|+|
T Consensus 196 -l~~~---~~~L~~L~L~~N~l~~-l~~~~---~~---------------------------------------L~~L~L 228 (622)
T 3g06_A 196 -LPTL---PSELYKLWAYNNRLTS-LPALP---SG---------------------------------------LKELIV 228 (622)
T ss_dssp -CCCC---CTTCCEEECCSSCCSS-CCCCC---TT---------------------------------------CCEEEC
T ss_pred -CCCc---cchhhEEECcCCcccc-cCCCC---CC---------------------------------------CCEEEc
Confidence 3332 3566677777776663 33211 22 266777
Q ss_pred cCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceec
Q 036375 834 SGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGK 913 (1009)
Q Consensus 834 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 913 (1009)
++|++++ +| ..+++|+.|+|++|+|+. +|. .+++|+.|+|++|+|+ .+|..+.++++|++|++++|+++|.
T Consensus 229 s~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 229 SGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred cCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 7777765 44 345667777777777774 443 4567777777777777 5677777777777777777777776
Q ss_pred CCC
Q 036375 914 IPF 916 (1009)
Q Consensus 914 ip~ 916 (1009)
+|.
T Consensus 300 ~~~ 302 (622)
T 3g06_A 300 TLQ 302 (622)
T ss_dssp HHH
T ss_pred CHH
Confidence 654
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-26 Score=253.14 Aligned_cols=243 Identities=23% Similarity=0.205 Sum_probs=209.9
Q ss_pred CccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 036375 619 NLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLN 698 (1009)
Q Consensus 619 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 698 (1009)
.++..+++.+.+.......+..+++|++|++++|++++..|..+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 46667778887776666667778899999999999999888899999999999999999997765 8999999999999
Q ss_pred CccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCC
Q 036375 699 NNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS 778 (1009)
Q Consensus 699 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 778 (1009)
+|++++.. ..++|++|++++|.+++..+. .+++|+.|++++|++++..+..+..+++|++|++++|++++.
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99998532 448999999999999855443 378999999999999988888899999999999999999988
Q ss_pred CChhhh-hhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEc
Q 036375 779 IPGSVG-DLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNL 857 (1009)
Q Consensus 779 ~p~~~~-~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 857 (1009)
.|..+. .++.| +.|+|++|.+++. | ....+++|++|+|
T Consensus 160 ~~~~~~~~l~~L---------------------------------------~~L~L~~N~l~~~-~-~~~~l~~L~~L~L 198 (317)
T 3o53_A 160 NFAELAASSDTL---------------------------------------EHLNLQYNFIYDV-K-GQVVFAKLKTLDL 198 (317)
T ss_dssp EGGGGGGGTTTC---------------------------------------CEEECTTSCCCEE-E-CCCCCTTCCEEEC
T ss_pred cHHHHhhccCcC---------------------------------------CEEECCCCcCccc-c-cccccccCCEEEC
Confidence 777663 56665 8999999999976 3 3345899999999
Q ss_pred cCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcce-ecCC
Q 036375 858 SRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS-GKIP 915 (1009)
Q Consensus 858 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-g~ip 915 (1009)
++|++++.++ .+..+++|++|+|++|++++ +|..+..+++|++|++++|+++ +.+|
T Consensus 199 s~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 199 SSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred CCCcCCcchh-hhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 9999997655 59999999999999999994 7888999999999999999998 5544
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.3e-24 Score=253.55 Aligned_cols=269 Identities=27% Similarity=0.354 Sum_probs=228.1
Q ss_pred CcccEEEeccccccccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEccCCcCCCcCCchhhcCCCCccEEEccCC
Q 036375 549 SKLSLLNVSLNQLQGQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGN 628 (1009)
Q Consensus 549 ~~L~~L~ls~n~l~~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n 628 (1009)
..++.+++++|.++ .+|..+. +.++.+++++|.++. +|..+++|++|++++|+++ .+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCC
Confidence 46899999999998 6676555 789999999999984 5667899999999999998 6775 6799999999999
Q ss_pred cccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCch
Q 036375 629 RLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPS 708 (1009)
Q Consensus 629 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 708 (1009)
++++..+ .+++|+.|++++|++++ +|.. +++|++|++++|++++. |. .+++|+.|++++|++++ +|
T Consensus 112 ~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~- 177 (622)
T 3g06_A 112 PLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP- 177 (622)
T ss_dssp CCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC-
T ss_pred cCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc-
Confidence 9997544 57899999999999986 4543 48999999999999964 43 34789999999999996 56
Q ss_pred hhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhh
Q 036375 709 SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKA 788 (1009)
Q Consensus 709 ~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 788 (1009)
..+++|+.|++++|.++ .+|.. +++|+.|++++|.++ .+|.. +++|+.|++++|++++ +|. .+++
T Consensus 178 --~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~---~l~~ 242 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV---LPSE 242 (622)
T ss_dssp --CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCC---CCTT
T ss_pred --ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCC---CCCc
Confidence 55789999999999998 57753 689999999999998 55643 5889999999999986 552 2233
Q ss_pred hhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCC
Q 036375 789 MAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPE 868 (1009)
Q Consensus 789 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 868 (1009)
| +.|+|++|+|++ +|. .+++|+.|+|++|+|+ .+|.
T Consensus 243 L---------------------------------------~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 243 L---------------------------------------KELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp C---------------------------------------CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred C---------------------------------------cEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCH
Confidence 3 889999999994 665 6788999999999999 7788
Q ss_pred CccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 036375 869 NISGLHQLASLDLSSNNLSGGIPSSLSSLS 898 (1009)
Q Consensus 869 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 898 (1009)
.+.++++|+.|+|++|.+++.+|..+..++
T Consensus 279 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp GGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred HHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999999999999999999999887765
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.8e-26 Score=262.66 Aligned_cols=220 Identities=25% Similarity=0.221 Sum_probs=146.2
Q ss_pred CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEEC
Q 036375 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL 721 (1009)
Q Consensus 642 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 721 (1009)
++|++|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.+++.. ..++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 366677777777666666666667777777777777665544 666677777777777666432 2266777777
Q ss_pred cCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhh-hhhhhhhccchhhhhh
Q 036375 722 GNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVG-DLKAMAHVQNIVKYLL 800 (1009)
Q Consensus 722 ~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~~~~~~~~~ 800 (1009)
++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..+. .++.|
T Consensus 107 ~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L----------- 171 (487)
T 3oja_A 107 ANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL----------- 171 (487)
T ss_dssp CSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-----------
T ss_pred cCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-----------
Confidence 77777644332 256677777777777766666677777777777777777776666654 45554
Q ss_pred ccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEe
Q 036375 801 FGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLD 880 (1009)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 880 (1009)
+.|+|++|.+++..+ +..+++|+.|+|++|++++.+|. +..+++|+.||
T Consensus 172 ----------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~ 220 (487)
T 3oja_A 172 ----------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWIS 220 (487)
T ss_dssp ----------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEE
T ss_pred ----------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEE
Confidence 667777777776522 33467777777777777765443 77777777777
Q ss_pred CCCCcCCCCCcccccCCCCCCeEeCCCCcce-ecCC
Q 036375 881 LSSNNLSGGIPSSLSSLSFLGYINLSRNQLS-GKIP 915 (1009)
Q Consensus 881 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-g~ip 915 (1009)
|++|.+++ +|..+..+++|++|++++|++. +.+|
T Consensus 221 Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 221 LRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 77777775 5666777777777777777776 4443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.4e-26 Score=264.77 Aligned_cols=236 Identities=20% Similarity=0.219 Sum_probs=181.3
Q ss_pred CCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 036375 617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH 696 (1009)
Q Consensus 617 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 696 (1009)
+++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3467777777777777777777777778888888887776655 7777788888888887775432 27788888
Q ss_pred ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccC-CCCCCCEEEccCCcC
Q 036375 697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLS-NLSSLQVLDLAENNL 775 (1009)
Q Consensus 697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l 775 (1009)
+++|.+++..+. .+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.+|..+. .+++|+.|+|++|.+
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 888888765543 346788888888888766666655 378888888888888877777765 678888888888888
Q ss_pred CCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeE
Q 036375 776 TGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVL 855 (1009)
Q Consensus 776 ~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L 855 (1009)
++..+.. .++.| +.|||++|.+++..| .+..+++|+.|
T Consensus 182 ~~~~~~~--~l~~L---------------------------------------~~L~Ls~N~l~~~~~-~~~~l~~L~~L 219 (487)
T 3oja_A 182 YDVKGQV--VFAKL---------------------------------------KTLDLSSNKLAFMGP-EFQSAAGVTWI 219 (487)
T ss_dssp CEEECCC--CCTTC---------------------------------------CEEECCSSCCCEECG-GGGGGTTCSEE
T ss_pred ccccccc--cCCCC---------------------------------------CEEECCCCCCCCCCH-hHcCCCCccEE
Confidence 7652211 23333 788889998887544 48899999999
Q ss_pred EccCCcccccCCCCccCCCCCCEEeCCCCcCC-CCCcccccCCCCCCeEeCC
Q 036375 856 NLSRNHIGGQIPENISGLHQLASLDLSSNNLS-GGIPSSLSSLSFLGYINLS 906 (1009)
Q Consensus 856 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~ls 906 (1009)
+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 220 ~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 220 SLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999999996 6778999999999999999998 7788889999888888886
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.2e-24 Score=231.83 Aligned_cols=209 Identities=24% Similarity=0.275 Sum_probs=122.8
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEc
Q 036375 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSL 746 (1009)
Q Consensus 667 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L 746 (1009)
+|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..|..+. .+++|+.|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEEC
Confidence 344444444444444443444444444444444444443334444444444444444444433333332 2445555555
Q ss_pred cCCcccccCCcccCCCCCCCEEEccCCcCCCC-CChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCC
Q 036375 747 RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS-IPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTP 825 (1009)
Q Consensus 747 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1009)
++|.+.+..+..+..+++|++|++++|++++. +|..+.++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L------------------------------------ 151 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL------------------------------------ 151 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC------------------------------------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC------------------------------------
Confidence 55555444444455555666666666665542 45555555544
Q ss_pred CceeEEEccCCccCCCCCccccCcCCCC----eEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCC
Q 036375 826 RLFHFIDLSGNNLHGDFPTQLTKLVGLV----VLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLG 901 (1009)
Q Consensus 826 ~~l~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 901 (1009)
+.|+|++|++++..+..+..+++|+ .|++++|++++..+..+.. .+|++|++++|++++..+..++.+++|+
T Consensus 152 ---~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 152 ---EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp ---CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred ---CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccccccc
Confidence 5566666666655555555555555 7888888888776665554 4788889998888877777788888899
Q ss_pred eEeCCCCcceecCCC
Q 036375 902 YINLSRNQLSGKIPF 916 (1009)
Q Consensus 902 ~L~ls~N~l~g~ip~ 916 (1009)
+|++++|++++..|.
T Consensus 228 ~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 228 KIWLHTNPWDCSCPR 242 (276)
T ss_dssp EEECCSSCBCCCTTT
T ss_pred EEEccCCcccccCCc
Confidence 999999988887764
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=5.2e-27 Score=282.56 Aligned_cols=248 Identities=17% Similarity=0.129 Sum_probs=115.1
Q ss_pred hhhcCCCCccEEEcCCCcCCCCCCCCCCCCCCCCcEEECCCCCCCCCchhhhhcCCCCcEEEccCCcCcccCCcccC-CC
Q 036375 192 GILKNLPNLTELHLSVCGLTGSITSITPVNLTSPAVLDLSLNHFNSLFPNWLVNISTLVYVDLSDCDLYGRIPIGFG-EL 270 (1009)
Q Consensus 192 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~-~l 270 (1009)
..+..+++|++|+++++.......... .. .+......++.....+++|++|++++|.+.+..+..+. .+
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~-~~---------~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 129 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVP-DG---------WGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSF 129 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSC-TT---------SCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHC
T ss_pred HHHhhCCCceEEeccCCCchhhccccc-cc---------ccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhC
Confidence 345677889999999875332111000 00 00000000111223455555666655555544444443 45
Q ss_pred CCCCEEEcCCCCCCCCcccccccCCCCCccEEEcccccccccCCcccc----CCCCCCEEEccCCc--cccc-Cchhhhc
Q 036375 271 PNLQYLSLAGNNNLSGSCSQLFRGSWKKIQILNFASNKLHGKLPSSVA----NMTSLTNFDLFDKK--VEGG-IPSSIAR 343 (1009)
Q Consensus 271 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~----~l~~L~~L~l~~n~--~~~~-~~~~l~~ 343 (1009)
++|++|++++|.......++.....+++|++|++++|.+.+..+.++. .+++|++|++++|. +... ++..+.+
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 555555555552111112233333455555555555554443333222 44566666666654 1111 1111233
Q ss_pred ccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCC-------cCcccCChhhcCCCCCCEE-eCcCCcc
Q 036375 344 LCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNN-------HLKGKLPEWLSQLENLVEL-TLSYNLL 415 (1009)
Q Consensus 344 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~l~~l~~L~~L-~Ls~n~l 415 (1009)
+++|++|++++|...+.++..+. .+++|++|+++.+ .+.+ ++..+.++++|+.| .+.+...
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~----------~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQ----------RAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHH----------HCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG
T ss_pred CCCCcEEecCCCCcHHHHHHHHh----------cCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch
Confidence 45566666655522222333333 3455555554333 2222 23356667777777 3333221
Q ss_pred cccCCCCCCCCCCCcEEeCCCCcCCCCC-CcccCCCCCCCEEEccCc
Q 036375 416 QGPIPASLGNLKNLTKLNLPGNQLNGTL-PETLGSLPELSVLDVSSN 461 (1009)
Q Consensus 416 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n 461 (1009)
+.++..+..+++|++|++++|.+++.. +..+..+++|++|++++|
T Consensus 279 -~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 279 -AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp -GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred -hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 223333345666777777766654321 122445666666666666
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1e-23 Score=226.59 Aligned_cols=212 Identities=24% Similarity=0.262 Sum_probs=142.6
Q ss_pred CCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECc
Q 036375 643 LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722 (1009)
Q Consensus 643 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 722 (1009)
+|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34555555555554444455555555555555555554444455555555555555555555544555555555555555
Q ss_pred CCcccccCchhhhhcCcCCcEEEccCCcccc-cCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhc
Q 036375 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSG-EIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLF 801 (1009)
Q Consensus 723 ~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 801 (1009)
+|.+.+..+..+. .+++|+.|++++|.+++ .+|..+..+++|++|++++|++++..+..+..++.++.+.
T Consensus 109 ~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~-------- 179 (276)
T 2z62_A 109 ETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN-------- 179 (276)
T ss_dssp TSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC--------
T ss_pred CCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc--------
Confidence 5555533222333 36666666666666664 3577788888888999999988887777888877763220
Q ss_pred cccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeC
Q 036375 802 GRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL 881 (1009)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 881 (1009)
..|++++|.+++..+..+.. .+|+.|+|++|++++.++..|.++++|+.|++
T Consensus 180 ---------------------------l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 180 ---------------------------LSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp ---------------------------EEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred ---------------------------eeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 27899999999766665554 48999999999999888888999999999999
Q ss_pred CCCcCCCCCc
Q 036375 882 SSNNLSGGIP 891 (1009)
Q Consensus 882 s~N~l~~~ip 891 (1009)
++|.+++..|
T Consensus 232 ~~N~~~c~c~ 241 (276)
T 2z62_A 232 HTNPWDCSCP 241 (276)
T ss_dssp CSSCBCCCTT
T ss_pred cCCcccccCC
Confidence 9999997543
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.8e-26 Score=277.95 Aligned_cols=135 Identities=17% Similarity=0.132 Sum_probs=85.2
Q ss_pred CCCCCeEEccCCcCCccCcCccc-CCCCCCEEECC--C----CcCccc-----CCccccCCCCCCEEEccCccccCCCch
Q 036375 641 MQLLQVIDLSRNSISGSISSSIG-NCTFLKVLDLS--Y----SSLSGV-----IPASLGQLTRLQSLHLNNNKLTGNLPS 708 (1009)
Q Consensus 641 l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~~p~ 708 (1009)
+++|+.|+++.|.+++..+..+. .+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 56666666666666544443443 35666666666 2 344421 112245667788888866 55544444
Q ss_pred hhcC-CCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCC
Q 036375 709 SFQN-LTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS-KLSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 709 ~~~~-l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~ 776 (1009)
.+.. +++|++|+|++|.+++..+..+..++++|+.|++++|.+++.... ....+++|+.|++++|+++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 4544 778888888888877665555544578888888888887654333 3445788888888888874
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=4.8e-23 Score=220.35 Aligned_cols=185 Identities=24% Similarity=0.292 Sum_probs=123.1
Q ss_pred CCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEc
Q 036375 691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDL 770 (1009)
Q Consensus 691 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 770 (1009)
++++|++++|++++..+..|..+++|++|++++|.++ .+|...+..+++|+.|++++|++++..+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 3444444444444333334444444444444444444 333333333455555555555555444444556666666666
Q ss_pred cCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcC
Q 036375 771 AENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLV 850 (1009)
Q Consensus 771 s~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~ 850 (1009)
++|++++..|..+..+++| +.|+|++|.+++..+..+..++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L---------------------------------------~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKL---------------------------------------TYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTC---------------------------------------CEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCccCeeCHHHhCcCcCC---------------------------------------CEEECCCCcCCccCHhHccCCc
Confidence 6666666655556555555 6677777777766666678888
Q ss_pred CCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCC
Q 036375 851 GLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIP 915 (1009)
Q Consensus 851 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 915 (1009)
+|+.|+|++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 89999999999988888888889999999999999998777778889999999999998876654
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.4e-23 Score=224.59 Aligned_cols=205 Identities=23% Similarity=0.229 Sum_probs=144.4
Q ss_pred ccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCC
Q 036375 662 IGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGL 741 (1009)
Q Consensus 662 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L 741 (1009)
...+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+. .+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD-KLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTT-TCTTC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhc-CCcCC
Confidence 33445555555555555422 2345555566666665555542 2455566666666666666533333233 36666
Q ss_pred cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCC
Q 036375 742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS 821 (1009)
Q Consensus 742 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1009)
+.|++++|++++..+..+..+++|++|++++|++++..|..++.+++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------------------------- 159 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-------------------------------- 159 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC--------------------------------
Confidence 666666666665555566777777788888887776666666666666
Q ss_pred CCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCC
Q 036375 822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLG 901 (1009)
Q Consensus 822 ~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 901 (1009)
+.|+|++|++++..|..++.+++|++|++++|++++.+|..++.+++|+.|++++|.+.+.. +.|+
T Consensus 160 -------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~ 225 (272)
T 3rfs_A 160 -------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIR 225 (272)
T ss_dssp -------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTH
T ss_pred -------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHH
Confidence 77888888888777777888999999999999999988888999999999999999988654 4688
Q ss_pred eEeCCCCcceecCCCC
Q 036375 902 YINLSRNQLSGKIPFE 917 (1009)
Q Consensus 902 ~L~ls~N~l~g~ip~~ 917 (1009)
+++++.|+++|.+|..
T Consensus 226 ~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 226 YLSEWINKHSGVVRNS 241 (272)
T ss_dssp HHHHHHHHTGGGBBCT
T ss_pred HHHHHHHhCCCcccCc
Confidence 9999999999999964
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.8e-24 Score=242.22 Aligned_cols=180 Identities=22% Similarity=0.221 Sum_probs=107.4
Q ss_pred EEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCC----cccccCC-CCCeEEccCCcCCccCcCcccCC-----C
Q 036375 597 LLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIP----GSIGEMQ-LLQVIDLSRNSISGSISSSIGNC-----T 666 (1009)
Q Consensus 597 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-----~ 666 (1009)
.+++++|.++|.+|. +....++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 356777777776664 33445557777777777776665 5566666 67777777777776655555553 6
Q ss_pred CCCEEECCCCcCcccCCcccc----CC-CCCCEEEccCccccCCCchhhc----C-CCCCCEEECcCCcccccCchhhhh
Q 036375 667 FLKVLDLSYSSLSGVIPASLG----QL-TRLQSLHLNNNKLTGNLPSSFQ----N-LTSLETLDLGNNRFSGNIPSLLGN 736 (1009)
Q Consensus 667 ~L~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~L~~N~l~~~~p~~~~----~-l~~L~~L~L~~N~l~~~ip~~l~~ 736 (1009)
+|++|++++|++++..+..+. .+ ++|++|++++|++++..+..+. . .++|++|+|++|.+++..+..+..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 777777777777665554333 23 6677777777776655554432 2 246777777777666433332211
Q ss_pred ---cCc-CCcEEEccCCcccccCCccc----CCC-CCCCEEEccCCcCCC
Q 036375 737 ---GFV-GLRILSLRSNAFSGEIPSKL----SNL-SSLQVLDLAENNLTG 777 (1009)
Q Consensus 737 ---~l~-~L~~L~L~~N~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~ 777 (1009)
.++ +|+.|++++|++++..+..+ ..+ ++|++|||++|++++
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 122 66666666666655444322 233 366666666666554
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.3e-22 Score=218.81 Aligned_cols=204 Identities=25% Similarity=0.275 Sum_probs=134.5
Q ss_pred cCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCc
Q 036375 663 GNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLR 742 (1009)
Q Consensus 663 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~ 742 (1009)
+++++++++++++|+++ .+|..+. ++++.|++++|++++..+..|..+++|++|++++|.+++ +|.. ..+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTCC
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcCC
Confidence 34444555555555444 2232222 345555555555554444555555555555555555552 2222 1356666
Q ss_pred EEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCC
Q 036375 743 ILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSK 822 (1009)
Q Consensus 743 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1009)
.|++++|+++ .+|..+..+++|++|++++|++++..|..|..+++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------- 126 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------- 126 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC---------------------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC---------------------------------
Confidence 6666666665 556666677777777777777776666666666665
Q ss_pred CCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCe
Q 036375 823 DTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGY 902 (1009)
Q Consensus 823 ~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 902 (1009)
+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|+++ .+|..+..+..|++
T Consensus 127 ------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 127 ------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199 (290)
T ss_dssp ------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE
T ss_pred ------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCe
Confidence 67777777777777777788888888888888888777777788888888888888888 56777777788888
Q ss_pred EeCCCCcceec
Q 036375 903 INLSRNQLSGK 913 (1009)
Q Consensus 903 L~ls~N~l~g~ 913 (1009)
+++++|++...
T Consensus 200 l~L~~Np~~C~ 210 (290)
T 1p9a_G 200 AFLHGNPWLCN 210 (290)
T ss_dssp EECCSCCBCCS
T ss_pred EEeCCCCccCc
Confidence 88888887653
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.7e-23 Score=224.13 Aligned_cols=226 Identities=22% Similarity=0.241 Sum_probs=166.8
Q ss_pred ccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 036375 620 LIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699 (1009)
Q Consensus 620 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 699 (1009)
+..+++..+.+.... ....+++|+.|++++|.+... ..+..+++|++|++++|++++. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 334444444444332 244566777777777776632 3467777777777777777753 3567777778888887
Q ss_pred ccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCC
Q 036375 700 NKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSI 779 (1009)
Q Consensus 700 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 779 (1009)
|.+++..+..|..+++|++|++++|.+++..|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|++++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 777776666677777888888888877744443333 4778888888888887666666788888888888888888777
Q ss_pred ChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccC
Q 036375 780 PGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSR 859 (1009)
Q Consensus 780 p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 859 (1009)
|..++.+++| +.|+|++|++++..|..++.+++|+.|++++
T Consensus 174 ~~~~~~l~~L---------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 174 EGVFDKLTQL---------------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp TTTTTTCTTC---------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred HHHhcCCccC---------------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 7667777766 7888888888888888889999999999999
Q ss_pred CcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 036375 860 NHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS 898 (1009)
Q Consensus 860 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 898 (1009)
|.+.+.. ++|+.|+++.|.++|.+|.+++.+.
T Consensus 215 N~~~~~~-------~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 215 NPWDCTC-------PGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SCBCCCT-------TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCccccC-------cHHHHHHHHHHhCCCcccCcccccC
Confidence 9888654 4688999999999999999887665
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=3e-22 Score=214.12 Aligned_cols=204 Identities=27% Similarity=0.327 Sum_probs=148.2
Q ss_pred CCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcC
Q 036375 644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723 (1009)
Q Consensus 644 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 723 (1009)
.+.+++++++++. +|..+. +++++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4556666666653 343332 4566666666666655555666666677777777666655455556677777777777
Q ss_pred CcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccc
Q 036375 724 NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGR 803 (1009)
Q Consensus 724 N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~ 803 (1009)
|.++ .+|...+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 95 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------- 159 (270)
T 2o6q_A 95 NKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-------------- 159 (270)
T ss_dssp SCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred CcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc--------------
Confidence 7766 3444333347777777777777776666667788888888888888887666666666666
Q ss_pred cccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCC
Q 036375 804 YRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSS 883 (1009)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 883 (1009)
+.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus 160 -------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 160 -------------------------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp -------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -------------------------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 7888888888887777889999999999999999988888899999999999999
Q ss_pred CcCCCCC
Q 036375 884 NNLSGGI 890 (1009)
Q Consensus 884 N~l~~~i 890 (1009)
|.+...-
T Consensus 215 N~~~c~c 221 (270)
T 2o6q_A 215 NPWDCTC 221 (270)
T ss_dssp SCBCCSS
T ss_pred CCeeCCC
Confidence 9987643
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.4e-24 Score=245.63 Aligned_cols=243 Identities=19% Similarity=0.250 Sum_probs=155.9
Q ss_pred CCcccccCCCCCeEEccCCcCCccCc----CcccCCCCCCEEECCCC---cCcccCCccc-------cCCCCCCEEEccC
Q 036375 634 IPGSIGEMQLLQVIDLSRNSISGSIS----SSIGNCTFLKVLDLSYS---SLSGVIPASL-------GQLTRLQSLHLNN 699 (1009)
Q Consensus 634 ~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~~ 699 (1009)
++..+..+++|++|++++|.+++..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33445555666666666666654422 23556666666666664 3334444433 5667777777777
Q ss_pred ccccC----CCchhhcCCCCCCEEECcCCcccccCchhhhhc---C---------cCCcEEEccCCccc-ccCC---ccc
Q 036375 700 NKLTG----NLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNG---F---------VGLRILSLRSNAFS-GEIP---SKL 759 (1009)
Q Consensus 700 N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~---l---------~~L~~L~L~~N~l~-~~~p---~~l 759 (1009)
|.+++ .+|..+..+++|++|+|++|.+++..+..+... + ++|+.|++++|+++ +.+| ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 77765 355566677777777777777654333333221 2 67777777777776 3334 345
Q ss_pred CCCCCCCEEEccCCcCCC-----CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEcc
Q 036375 760 SNLSSLQVLDLAENNLTG-----SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLS 834 (1009)
Q Consensus 760 ~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 834 (1009)
..+++|++|++++|+++. .+|..+..+++| +.|+|+
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L---------------------------------------~~L~Ls 224 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL---------------------------------------KVLDLQ 224 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC---------------------------------------CEEECC
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc---------------------------------------cEEECc
Confidence 567777777777777762 222234444433 677777
Q ss_pred CCccC----CCCCccccCcCCCCeEEccCCccccc----CCCCcc--CCCCCCEEeCCCCcCCC----CCcccc-cCCCC
Q 036375 835 GNNLH----GDFPTQLTKLVGLVVLNLSRNHIGGQ----IPENIS--GLHQLASLDLSSNNLSG----GIPSSL-SSLSF 899 (1009)
Q Consensus 835 ~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~--~l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~ 899 (1009)
+|.++ +.+|..+..+++|+.|+|++|.+++. +|..+. .+++|++|+|++|.+++ .+|..+ .++++
T Consensus 225 ~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence 77775 56677778888888888888888765 555553 37888888888888887 477776 56788
Q ss_pred CCeEeCCCCcceecCC
Q 036375 900 LGYINLSRNQLSGKIP 915 (1009)
Q Consensus 900 L~~L~ls~N~l~g~ip 915 (1009)
|++|++++|++++..|
T Consensus 305 L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 305 LLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTSBSCTTSH
T ss_pred ceEEEccCCcCCcchh
Confidence 8888888888877654
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=7e-24 Score=237.34 Aligned_cols=257 Identities=19% Similarity=0.204 Sum_probs=177.2
Q ss_pred EEEccCCcccccCCcccccCCCCCeEEccCCcCCccCc----CcccCCC-CCCEEECCCCcCcccCCccccCC-----CC
Q 036375 622 FLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSIS----SSIGNCT-FLKVLDLSYSSLSGVIPASLGQL-----TR 691 (1009)
Q Consensus 622 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 691 (1009)
+++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677788887777766666678888888888876666 6677777 78888888888887766666654 78
Q ss_pred CCEEEccCccccCCCchhh----cCC-CCCCEEECcCCcccccCchhhhhc----CcCCcEEEccCCcccccC----Ccc
Q 036375 692 LQSLHLNNNKLTGNLPSSF----QNL-TSLETLDLGNNRFSGNIPSLLGNG----FVGLRILSLRSNAFSGEI----PSK 758 (1009)
Q Consensus 692 L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~L~~N~l~~~ip~~l~~~----l~~L~~L~L~~N~l~~~~----p~~ 758 (1009)
|++|++++|++++..+..+ ..+ ++|++|++++|.+++..+..+... .++|+.|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8888888888876666543 334 788888888888876555544322 357888888888887533 333
Q ss_pred cCCCC-CCCEEEccCCcCCCCCChhhhhh-hhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCC
Q 036375 759 LSNLS-SLQVLDLAENNLTGSIPGSVGDL-KAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGN 836 (1009)
Q Consensus 759 l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N 836 (1009)
+..++ +|++|++++|++++..+..+... ... +..++.|||++|
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-----------------------------------~~~L~~L~Ls~N 206 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASI-----------------------------------PASVTSLDLSAN 206 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS-----------------------------------CTTCCEEECTTS
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhC-----------------------------------CCCCCEEECCCC
Confidence 44554 78888888888877766655543 111 012377888888
Q ss_pred ccCCC----CCccccC-cCCCCeEEccCCcccccCC----CCccCCCCCCEEeCCCCcCCCCCc-------ccccCCCCC
Q 036375 837 NLHGD----FPTQLTK-LVGLVVLNLSRNHIGGQIP----ENISGLHQLASLDLSSNNLSGGIP-------SSLSSLSFL 900 (1009)
Q Consensus 837 ~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~ip-------~~l~~l~~L 900 (1009)
.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|+|++|.+.+..+ ..+..+++|
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 88764 4445555 3478888888888876544 345667788888888888554433 356677778
Q ss_pred CeEeCCCCcceec
Q 036375 901 GYINLSRNQLSGK 913 (1009)
Q Consensus 901 ~~L~ls~N~l~g~ 913 (1009)
++||+++|++.+.
T Consensus 287 ~~LdL~~N~l~~~ 299 (362)
T 3goz_A 287 ILVDKNGKEIHPS 299 (362)
T ss_dssp EEECTTSCBCCGG
T ss_pred EEEecCCCcCCCc
Confidence 8888888887655
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=8.3e-22 Score=212.44 Aligned_cols=204 Identities=25% Similarity=0.264 Sum_probs=150.2
Q ss_pred cccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCC
Q 036375 638 IGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLE 717 (1009)
Q Consensus 638 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 717 (1009)
+.++++++++++++|.++. +|..+. +.++.|++++|++++..|..|..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 3445566666666666653 333332 466677777777766666666677777777777777664322 25667777
Q ss_pred EEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhh
Q 036375 718 TLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVK 797 (1009)
Q Consensus 718 ~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~ 797 (1009)
+|++++|.++ .+|..+. .+++|+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------- 150 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-------- 150 (290)
T ss_dssp EEECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC--------
T ss_pred EEECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC--------
Confidence 7777777776 6666554 47778888888888876666778888888888888888887766667776666
Q ss_pred hhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCC
Q 036375 798 YLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLA 877 (1009)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 877 (1009)
+.|+|++|++++..+..+.++++|+.|+|++|+++ .+|..+..+.+|+
T Consensus 151 -------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~ 198 (290)
T 1p9a_G 151 -------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198 (290)
T ss_dssp -------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred -------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCC
Confidence 78888888888777777888999999999999999 6777788888999
Q ss_pred EEeCCCCcCCC
Q 036375 878 SLDLSSNNLSG 888 (1009)
Q Consensus 878 ~L~Ls~N~l~~ 888 (1009)
.|+|++|.+..
T Consensus 199 ~l~L~~Np~~C 209 (290)
T 1p9a_G 199 FAFLHGNPWLC 209 (290)
T ss_dssp EEECCSCCBCC
T ss_pred eEEeCCCCccC
Confidence 99999999875
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.1e-23 Score=230.16 Aligned_cols=249 Identities=21% Similarity=0.254 Sum_probs=163.7
Q ss_pred ccEEEccCCcccccCCcccccC--CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCccc-CCccccCCCCCCEEE
Q 036375 620 LIFLSVSGNRLTGKIPGSIGEM--QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGV-IPASLGQLTRLQSLH 696 (1009)
Q Consensus 620 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ 696 (1009)
++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 444444444443 2233444 5566666666666655443 34566666777766666654 555666667777777
Q ss_pred ccCccccCCCchhhcCCCCCCEEECcCC-ccccc-CchhhhhcCcCCcEEEccCC-ccccc-CCcccCCCC-CCCEEEcc
Q 036375 697 LNNNKLTGNLPSSFQNLTSLETLDLGNN-RFSGN-IPSLLGNGFVGLRILSLRSN-AFSGE-IPSKLSNLS-SLQVLDLA 771 (1009)
Q Consensus 697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-ip~~l~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~Ls 771 (1009)
+++|.+++..+..+..+++|++|++++| .+++. +|..+. .+++|+.|++++| .+++. ++..+..++ +|++|+++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 7777666666666666777777777777 45542 444444 3777777777777 66643 455566677 77888887
Q ss_pred CC--cCC-CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCc-cCCCCCcccc
Q 036375 772 EN--NLT-GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNN-LHGDFPTQLT 847 (1009)
Q Consensus 772 ~N--~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~-l~~~~p~~l~ 847 (1009)
+| .++ +.+|..+.++++| +.|++++|. +++..+..+.
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L---------------------------------------~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNL---------------------------------------VHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTC---------------------------------------SEEECTTCTTCCGGGGGGGG
T ss_pred CCcccCCHHHHHHHHhhCCCC---------------------------------------CEEeCCCCCcCCHHHHHHHh
Confidence 77 454 4455555555555 778888888 7777778888
Q ss_pred CcCCCCeEEccCCc-ccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCC-CCCCeEeCCCCcceecCCC
Q 036375 848 KLVGLVVLNLSRNH-IGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSL-SFLGYINLSRNQLSGKIPF 916 (1009)
Q Consensus 848 ~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~ip~ 916 (1009)
++++|++|++++|. +.......++++++|+.|++++| ++. ..+..+ ..+..|++++|+++|..|.
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence 88999999999985 33322236788999999999998 433 234444 3477788999999998885
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=221.56 Aligned_cols=224 Identities=21% Similarity=0.212 Sum_probs=136.8
Q ss_pred CccEEEccCCcccccCCc---ccccCCCCCeEEccCCcCCccCcCcc--cCCCCCCEEECCCCcCcccCC----ccccCC
Q 036375 619 NLIFLSVSGNRLTGKIPG---SIGEMQLLQVIDLSRNSISGSISSSI--GNCTFLKVLDLSYSSLSGVIP----ASLGQL 689 (1009)
Q Consensus 619 ~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l 689 (1009)
.++.+.+.++.++...-. .+..+++|++|++++|++.+..|..+ ..+++|++|++++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355555555554321100 11123445555555555555555544 455555555555555554333 122334
Q ss_pred CCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccccc--C--CcccCCCCCC
Q 036375 690 TRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGE--I--PSKLSNLSSL 765 (1009)
Q Consensus 690 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~--~--p~~l~~l~~L 765 (1009)
++|++|++++|++++..|..|..+ ++|++|++++|++.+. + +..+..+++|
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l-------------------------~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 199 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAF-------------------------PALTSLDLSDNPGLGERGLMAALCPHKFPAI 199 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCC-------------------------TTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred cCCCEEEeeCCCcchhhHHHhccC-------------------------CCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence 445555555555444444444444 4555555555544331 1 2234567788
Q ss_pred CEEEccCCcCCCCCChh----hhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCC
Q 036375 766 QVLDLAENNLTGSIPGS----VGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGD 841 (1009)
Q Consensus 766 ~~L~Ls~N~l~~~~p~~----~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ 841 (1009)
++|++++|+++. +|.. ++++++| +.|||++|++++.
T Consensus 200 ~~L~Ls~N~l~~-l~~~~~~l~~~l~~L---------------------------------------~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 200 QNLALRNTGMET-PTGVCAALAAAGVQP---------------------------------------HSLDLSHNSLRAT 239 (310)
T ss_dssp CSCBCCSSCCCC-HHHHHHHHHHHTCCC---------------------------------------SSEECTTSCCCCC
T ss_pred CEEECCCCCCCc-hHHHHHHHHhcCCCC---------------------------------------CEEECCCCCCCcc
Confidence 888888888863 2221 2344444 7788899998888
Q ss_pred CCccccCc---CCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375 842 FPTQLTKL---VGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912 (1009)
Q Consensus 842 ~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 912 (1009)
+|..+..+ ++|++|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|+++.
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 88887777 59999999999999 6677665 7999999999999974 33 6788999999999998864
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=7.7e-22 Score=208.48 Aligned_cols=212 Identities=25% Similarity=0.270 Sum_probs=130.5
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEc
Q 036375 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSL 746 (1009)
Q Consensus 667 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L 746 (1009)
..++++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|+|++|.++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------- 72 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------- 72 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-------------------
Confidence 4556666666666 3444333 45666666666666555555555555555555555555
Q ss_pred cCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCC
Q 036375 747 RSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPR 826 (1009)
Q Consensus 747 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1009)
+..|..+..+++|++|++++|++++..|..+..+++|
T Consensus 73 ------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------------------------------- 109 (251)
T 3m19_A 73 ------TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL------------------------------------- 109 (251)
T ss_dssp ------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred ------ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-------------------------------------
Confidence 3444445555556666666666655555555555444
Q ss_pred ceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCC
Q 036375 827 LFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLS 906 (1009)
Q Consensus 827 ~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls 906 (1009)
+.|+|++|++++..+..+..+++|++|+|++|++++.++..|+.+++|++|+|++|++++..|..+..+++|++|+++
T Consensus 110 --~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 110 --DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp --CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred --CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 566666666666666667778888888888888887777788888888888888888888777788888888888888
Q ss_pred CCcceecCCCCCCCCc------ccCCcCCCCCCCCCCCCCCCCCCC
Q 036375 907 RNQLSGKIPFEGHMTT------FDASSFAGNPGLCGDPLPVKCQDD 946 (1009)
Q Consensus 907 ~N~l~g~ip~~~~~~~------~~~~~~~~n~~lc~~~~~~~c~~~ 946 (1009)
+|++++..+....+.. .......|+ .+|+.|....|..+
T Consensus 188 ~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 188 GNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp SCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 8888776432111110 111122344 46666666778655
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1e-22 Score=222.59 Aligned_cols=183 Identities=19% Similarity=0.186 Sum_probs=139.8
Q ss_pred CCccEEEccCCcCCCcCCchh--hcCCCCccEEEccCCcccccCCccc--ccCCCCCeEEccCCcCCccCc----CcccC
Q 036375 593 VEIELLDLSNNHFSGPIPQNI--SGSMPNLIFLSVSGNRLTGKIPGSI--GEMQLLQVIDLSRNSISGSIS----SSIGN 664 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~ 664 (1009)
..++.+.+.++.++...-..+ ...+++|++|++++|.+++..|..+ ..+++|++|++++|++++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 457888998887753211111 1134679999999999999999888 899999999999999997655 34567
Q ss_pred CCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCC--C--chhhcCCCCCCEEECcCCcccccCchh---hhhc
Q 036375 665 CTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGN--L--PSSFQNLTSLETLDLGNNRFSGNIPSL---LGNG 737 (1009)
Q Consensus 665 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~ip~~---l~~~ 737 (1009)
+++|++|++++|++++..|..|+.+++|++|++++|++.+. + +..+..+++|++|++++|.++ .+|.. +...
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 99999999999999999899999999999999999998753 2 223468899999999999996 44432 3334
Q ss_pred CcCCcEEEccCCcccccCCcccCCC---CCCCEEEccCCcCC
Q 036375 738 FVGLRILSLRSNAFSGEIPSKLSNL---SSLQVLDLAENNLT 776 (1009)
Q Consensus 738 l~~L~~L~L~~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~ 776 (1009)
+++|+.|++++|++++..|..+..+ ++|++|++++|+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 6777777777777776666666555 46666666666655
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=8.1e-23 Score=226.76 Aligned_cols=254 Identities=17% Similarity=0.230 Sum_probs=206.3
Q ss_pred CccEEEccCCcCCCcCCchhhcCC--CCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCcc-CcCcccCCCCCCE
Q 036375 594 EIELLDLSNNHFSGPIPQNISGSM--PNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGS-ISSSIGNCTFLKV 670 (1009)
Q Consensus 594 ~L~~L~Ls~n~l~~~ip~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~ 670 (1009)
.++.++++++.+. ...+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4678888888775 2344445 7899999999999987766 45689999999999998866 7788899999999
Q ss_pred EECCCCcCcccCCccccCCCCCCEEEccCc-cccCC-CchhhcCCCCCCEEECcCC-ccccc-CchhhhhcCc-CCcEEE
Q 036375 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNNN-KLTGN-LPSSFQNLTSLETLDLGNN-RFSGN-IPSLLGNGFV-GLRILS 745 (1009)
Q Consensus 671 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-ip~~l~~~l~-~L~~L~ 745 (1009)
|++++|++++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+. .++ +|+.|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEE
Confidence 999999999888888999999999999999 67753 6777889999999999999 88764 566565 488 999999
Q ss_pred ccCC--ccc-ccCCcccCCCCCCCEEEccCCc-CCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCC
Q 036375 746 LRSN--AFS-GEIPSKLSNLSSLQVLDLAENN-LTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS 821 (1009)
Q Consensus 746 L~~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1009)
+++| .++ +.+|..+..+++|++|++++|. +++..+..+.++++|
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L-------------------------------- 249 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL-------------------------------- 249 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC--------------------------------
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC--------------------------------
Confidence 9999 455 4667778889999999999999 777777777777666
Q ss_pred CCCCCceeEEEccCCc-cCCCCCccccCcCCCCeEEccCCcccccCCCCccCCC-CCCEEeCCCCcCCCCCcccccC
Q 036375 822 KDTPRLFHFIDLSGNN-LHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLH-QLASLDLSSNNLSGGIPSSLSS 896 (1009)
Q Consensus 822 ~~~~~~l~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~l~~ 896 (1009)
+.|++++|. ++......++++++|+.|++++| ++ .+.+..+. .++.|++++|++++..|..++.
T Consensus 250 -------~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 250 -------QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp -------CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred -------CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 889999995 33332336889999999999999 33 23455553 4888889999999999988765
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=6.9e-22 Score=207.31 Aligned_cols=196 Identities=17% Similarity=0.212 Sum_probs=101.4
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCCEEEccCcc-ccCCCchhhcCCCCCCEEECcC-CcccccCchhhhhcCcCCcEE
Q 036375 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK-LTGNLPSSFQNLTSLETLDLGN-NRFSGNIPSLLGNGFVGLRIL 744 (1009)
Q Consensus 667 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~ip~~l~~~l~~L~~L 744 (1009)
+|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.++ .+|...+..+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 34444444444444333344444444444444443 4433333444444444444444 4444 2222211234444444
Q ss_pred EccCCcccccCCcccCCCCCCC---EEEccCC-cCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCC
Q 036375 745 SLRSNAFSGEIPSKLSNLSSLQ---VLDLAEN-NLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGS 820 (1009)
Q Consensus 745 ~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1009)
++++|++++ +|. +..+++|+ +|++++| ++++..+..|.+++.|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------------------- 157 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------------------- 157 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence 444444443 333 44444444 5555555 5554444445544444
Q ss_pred CCCCCCcee-EEEccCCccCCCCCccccCcCCCCeEEccCCc-ccccCCCCccCC-CCCCEEeCCCCcCCCCCcccccCC
Q 036375 821 SKDTPRLFH-FIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNH-IGGQIPENISGL-HQLASLDLSSNNLSGGIPSSLSSL 897 (1009)
Q Consensus 821 ~~~~~~~l~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~ip~~l~~l 897 (1009)
+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|.++ ++|+.||+++|++++. |.. .+
T Consensus 158 --------~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~ 225 (239)
T 2xwt_C 158 --------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GL 225 (239)
T ss_dssp --------EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TC
T ss_pred --------eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--Hh
Confidence 5 5566666665 333322222667777777774 776666777777 7777777777777754 333 45
Q ss_pred CCCCeEeCCCC
Q 036375 898 SFLGYINLSRN 908 (1009)
Q Consensus 898 ~~L~~L~ls~N 908 (1009)
++|+.|+++++
T Consensus 226 ~~L~~L~l~~~ 236 (239)
T 2xwt_C 226 EHLKELIARNT 236 (239)
T ss_dssp TTCSEEECTTC
T ss_pred ccCceeeccCc
Confidence 67777777765
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3.2e-23 Score=234.50 Aligned_cols=238 Identities=21% Similarity=0.270 Sum_probs=189.4
Q ss_pred hcCCCCccEEEccCCcccccCC----cccccCCCCCeEEccCC---cCCccCcCcc-------cCCCCCCEEECCCCcCc
Q 036375 614 SGSMPNLIFLSVSGNRLTGKIP----GSIGEMQLLQVIDLSRN---SISGSISSSI-------GNCTFLKVLDLSYSSLS 679 (1009)
Q Consensus 614 ~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N---~l~~~~p~~l-------~~l~~L~~L~Ls~N~l~ 679 (1009)
+..+++|++|++++|.+++..+ ..+..+++|++|++++| ++++.+|..+ ..+++|++|+|++|+++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3457788888888888886544 34667889999999886 4455556554 68899999999999998
Q ss_pred c----cCCccccCCCCCCEEEccCccccCCCchh----hcCC---------CCCCEEECcCCccc-ccCch---hhhhcC
Q 036375 680 G----VIPASLGQLTRLQSLHLNNNKLTGNLPSS----FQNL---------TSLETLDLGNNRFS-GNIPS---LLGNGF 738 (1009)
Q Consensus 680 ~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l---------~~L~~L~L~~N~l~-~~ip~---~l~~~l 738 (1009)
+ .+|..+..+++|++|+|++|.+++..+.. +..+ ++|++|++++|+++ +.+|. .+. .+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SH 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hC
Confidence 7 46777888999999999999987544433 3344 89999999999997 45553 333 48
Q ss_pred cCCcEEEccCCcccc-----cCCcccCCCCCCCEEEccCCcCC----CCCChhhhhhhhhhhccchhhhhhcccccccee
Q 036375 739 VGLRILSLRSNAFSG-----EIPSKLSNLSSLQVLDLAENNLT----GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYY 809 (1009)
Q Consensus 739 ~~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 809 (1009)
++|+.|++++|+++. ..|..+..+++|++|+|++|+++ +.+|..+..+++|
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L-------------------- 246 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL-------------------- 246 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC--------------------
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc--------------------
Confidence 899999999999873 34557889999999999999996 5666666666665
Q ss_pred eceEEEeecCCCCCCCCceeEEEccCCccCCC----CCcccc--CcCCCCeEEccCCcccc----cCCCCc-cCCCCCCE
Q 036375 810 EENLVINTKGSSKDTPRLFHFIDLSGNNLHGD----FPTQLT--KLVGLVVLNLSRNHIGG----QIPENI-SGLHQLAS 878 (1009)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~----~p~~l~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~ 878 (1009)
+.|+|++|.+++. +|..+. .+++|+.|+|++|.+++ .+|..+ .++++|++
T Consensus 247 -------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 247 -------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp -------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred -------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 8899999999876 567774 49999999999999998 477777 67899999
Q ss_pred EeCCCCcCCCCCc
Q 036375 879 LDLSSNNLSGGIP 891 (1009)
Q Consensus 879 L~Ls~N~l~~~ip 891 (1009)
|++++|++++..|
T Consensus 308 L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 308 LELNGNRFSEEDD 320 (386)
T ss_dssp EECTTSBSCTTSH
T ss_pred EEccCCcCCcchh
Confidence 9999999998875
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.5e-21 Score=208.25 Aligned_cols=147 Identities=27% Similarity=0.402 Sum_probs=70.4
Q ss_pred CCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 036375 617 MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH 696 (1009)
Q Consensus 617 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 696 (1009)
+++|++|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|++++|++++. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 44555555555555532 2 34555555555555555554333 55555555555555555532 2345555555555
Q ss_pred ccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375 697 LNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 697 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 776 (1009)
+++|++++. + .+..+++|++|++++|.+++ ++. +. .+++|+.|++++|++++..+ +..+++|+.|++++|+++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LA-GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-cc-CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 555555432 2 24455555555555555542 222 22 24444444444444443211 444444444444444444
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=4.6e-21 Score=201.00 Aligned_cols=196 Identities=19% Similarity=0.219 Sum_probs=119.7
Q ss_pred CCCeEEccCCcCCccCcCcccCCCCCCEEECCCCc-CcccCCccccCCCCCCEEEccC-ccccCCCchhhcCCCCCCEEE
Q 036375 643 LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSS-LSGVIPASLGQLTRLQSLHLNN-NKLTGNLPSSFQNLTSLETLD 720 (1009)
Q Consensus 643 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~ 720 (1009)
+|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34444444444444444444455555555555554 4444444455555555555554 555544444555555555555
Q ss_pred CcCCcccccCchhhhhcCcCCc---EEEccCC-cccccCCcccCCCCCCC-EEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375 721 LGNNRFSGNIPSLLGNGFVGLR---ILSLRSN-AFSGEIPSKLSNLSSLQ-VLDLAENNLTGSIPGSVGDLKAMAHVQNI 795 (1009)
Q Consensus 721 L~~N~l~~~ip~~l~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 795 (1009)
+++|++++ +|. +. .+++|+ .|++++| .+++..+..|..+++|+ .|++++|+++ .+|......++|
T Consensus 112 l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L------ 181 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL------ 181 (239)
T ss_dssp EEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE------
T ss_pred CCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC------
Confidence 55555552 444 22 355555 6777776 66655555677777788 8888888777 444332221333
Q ss_pred hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCc-cCCCCCccccCc-CCCCeEEccCCcccccCCCCccCC
Q 036375 796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNN-LHGDFPTQLTKL-VGLVVLNLSRNHIGGQIPENISGL 873 (1009)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l 873 (1009)
+.|+|++|+ +++..+..|.++ ++|+.|++++|++++..+. .+
T Consensus 182 ---------------------------------~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~ 225 (239)
T 2xwt_C 182 ---------------------------------DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GL 225 (239)
T ss_dssp ---------------------------------EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TC
T ss_pred ---------------------------------CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---Hh
Confidence 788888884 887777788888 8999999999999865444 56
Q ss_pred CCCCEEeCCCC
Q 036375 874 HQLASLDLSSN 884 (1009)
Q Consensus 874 ~~L~~L~Ls~N 884 (1009)
++|+.|+++++
T Consensus 226 ~~L~~L~l~~~ 236 (239)
T 2xwt_C 226 EHLKELIARNT 236 (239)
T ss_dssp TTCSEEECTTC
T ss_pred ccCceeeccCc
Confidence 78889998876
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=6.7e-21 Score=207.56 Aligned_cols=194 Identities=25% Similarity=0.408 Sum_probs=110.9
Q ss_pred ccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCE
Q 036375 639 GEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLET 718 (1009)
Q Consensus 639 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 718 (1009)
..+++|++|++++|.+.. +| .+..+++|++|++++|++++..+ +..+++|++|++++|++++. + .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCE
Confidence 345556666666665553 22 35555555555555555554322 55555555555555555532 2 3444555555
Q ss_pred EECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhh
Q 036375 719 LDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKY 798 (1009)
Q Consensus 719 L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~ 798 (1009)
|++++|.+++ +|. +..+++|++|++++|++++..+ +..+++|
T Consensus 112 L~l~~n~l~~-~~~--------------------------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L--------- 153 (308)
T 1h6u_A 112 LDLTSTQITD-VTP--------------------------LAGLSNLQVLYLDLNQITNISP--LAGLTNL--------- 153 (308)
T ss_dssp EECTTSCCCC-CGG--------------------------GTTCTTCCEEECCSSCCCCCGG--GGGCTTC---------
T ss_pred EECCCCCCCC-chh--------------------------hcCCCCCCEEECCCCccCcCcc--ccCCCCc---------
Confidence 5555555442 222 4555555555555555554322 3333333
Q ss_pred hhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCE
Q 036375 799 LLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLAS 878 (1009)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 878 (1009)
+.|+|++|++++..+ +..+++|+.|++++|++++..+ +..+++|++
T Consensus 154 ------------------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 199 (308)
T 1h6u_A 154 ------------------------------QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIE 199 (308)
T ss_dssp ------------------------------CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred ------------------------------cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCE
Confidence 556666666664333 6667777777777777776544 667777777
Q ss_pred EeCCCCcCCCCCcccccCCCCCCeEeCCCCccee
Q 036375 879 LDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSG 912 (1009)
Q Consensus 879 L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 912 (1009)
|++++|++++..| +..+++|++|++++|++++
T Consensus 200 L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 200 VHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred EEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7777777776543 6777777777777777765
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=2.4e-20 Score=196.94 Aligned_cols=181 Identities=26% Similarity=0.311 Sum_probs=137.0
Q ss_pred CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEEC
Q 036375 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL 721 (1009)
Q Consensus 642 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 721 (1009)
...++++++++.++ .+|..+. +.++.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 46789999999998 5565554 68999999999999999999999999999999999999988888999999999999
Q ss_pred cCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhc
Q 036375 722 GNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLF 801 (1009)
Q Consensus 722 ~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~ 801 (1009)
++|.++ .+|...+..+++|+.|++++|++++..+..+..+++|
T Consensus 91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------------------------------ 133 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL------------------------------------ 133 (251)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------------------------------
T ss_pred CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc------------------------------------
Confidence 999887 3433322235555555555555543333334444444
Q ss_pred cccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeC
Q 036375 802 GRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL 881 (1009)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 881 (1009)
+.|+|++|++++..+..|+.+++|++|+|++|++++.++..+..+++|+.|+|
T Consensus 134 ---------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 134 ---------------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp ---------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ---------------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 45555555555555556777788888888888888887778888888888888
Q ss_pred CCCcCCCC
Q 036375 882 SSNNLSGG 889 (1009)
Q Consensus 882 s~N~l~~~ 889 (1009)
++|.+++.
T Consensus 187 ~~N~~~c~ 194 (251)
T 3m19_A 187 FGNQFDCS 194 (251)
T ss_dssp CSCCBCTT
T ss_pred eCCceeCC
Confidence 88888876
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=4.7e-20 Score=205.05 Aligned_cols=172 Identities=21% Similarity=0.185 Sum_probs=108.9
Q ss_pred ccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCc-CcccCCCCCCE-EE
Q 036375 595 IELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSIS-SSIGNCTFLKV-LD 672 (1009)
Q Consensus 595 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~ 672 (1009)
-+.++.++++++ .+|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.
T Consensus 11 ~~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 11 NRVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TTEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CCEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 357788888887 777654 3567888888888877666777778888888888887765444 45677777664 45
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCC-cccccCchhhhhcC-cCCcEEEccCCc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN-RFSGNIPSLLGNGF-VGLRILSLRSNA 750 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~ip~~l~~~l-~~L~~L~L~~N~ 750 (1009)
++.|++++..|..|..+++|++|++++|++++..+..+....++..+++.++ .+. .+|...+..+ ..++.|++++|+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccc
Confidence 5567777777777777777777777777777655555555566666666543 333 4444322222 245555566655
Q ss_pred ccccCCcccCCCCCCCEEEccC
Q 036375 751 FSGEIPSKLSNLSSLQVLDLAE 772 (1009)
Q Consensus 751 l~~~~p~~l~~l~~L~~L~Ls~ 772 (1009)
++ .+|.......+|+.+++++
T Consensus 166 i~-~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 166 IQ-EIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp CC-EECTTSSTTEEEEEEECTT
T ss_pred cc-CCChhhccccchhHHhhcc
Confidence 55 3333333444555555543
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=7.7e-20 Score=213.35 Aligned_cols=45 Identities=36% Similarity=0.467 Sum_probs=29.2
Q ss_pred CeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC
Q 036375 853 VVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS 898 (1009)
Q Consensus 853 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 898 (1009)
+.|+|++|+|+ .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 66666666666 3555566666677777777777666666665543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.4e-19 Score=211.26 Aligned_cols=162 Identities=27% Similarity=0.392 Sum_probs=102.3
Q ss_pred CCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEE
Q 036375 690 TRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLD 769 (1009)
Q Consensus 690 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 769 (1009)
++|++|+|++|+++ .+| ..+++|++|++++|.+++ +|. +. .+|+.|++++|++++ +|. .+++|+.|+
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP---ASLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC---TTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh---cCCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 34444444444444 233 223445555555555543 444 22 155555555555554 443 455666666
Q ss_pred ccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCc
Q 036375 770 LAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKL 849 (1009)
Q Consensus 770 Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l 849 (1009)
+++|++++ +|. .+++| +.|+|++|+|++ +|. |.
T Consensus 147 Ls~N~l~~-lp~---~l~~L---------------------------------------~~L~Ls~N~L~~-lp~-l~-- 179 (571)
T 3cvr_A 147 ADNNQLTM-LPE---LPTSL---------------------------------------EVLSVRNNQLTF-LPE-LP-- 179 (571)
T ss_dssp CCSSCCSC-CCC---CCTTC---------------------------------------CEEECCSSCCSC-CCC-CC--
T ss_pred CCCCccCc-CCC---cCCCc---------------------------------------CEEECCCCCCCC-cch-hh--
Confidence 66666664 443 22222 666777777776 555 55
Q ss_pred CCCCeEEccCCcccccCCCCccCCCCC-------CEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCC
Q 036375 850 VGLVVLNLSRNHIGGQIPENISGLHQL-------ASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF 916 (1009)
Q Consensus 850 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 916 (1009)
++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|++|++++|+++|.+|.
T Consensus 180 ~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 180 ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 78888888888888 5555 554 67 99999999999 5888888899999999999999998875
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.1e-19 Score=199.86 Aligned_cols=180 Identities=17% Similarity=0.120 Sum_probs=85.7
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCC-cccccCCCCCe-EEccCCcCCccCcCcccCCCCCCE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIP-GSIGEMQLLQV-IDLSRNSISGSISSSIGNCTFLKV 670 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~ 670 (1009)
.++++|+|++|+++ .+|...|..+++|++|+|++|++.+.+| .+|.+++++++ +.+..|+++...|..|..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 34555555555554 4444444555555555555555543332 34455554443 333445555444555555555555
Q ss_pred EECCCCcCcccCCccccCCCCCCEEEccC-ccccCCCchhhcCCC-CCCEEECcCCcccccCchhhhhcCcCCcEEEccC
Q 036375 671 LDLSYSSLSGVIPASLGQLTRLQSLHLNN-NKLTGNLPSSFQNLT-SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRS 748 (1009)
Q Consensus 671 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~ 748 (1009)
|++++|++++..+..+....++..|++.+ +++....+..|..+. .++.|++++|.++ .+|...+. ..+|+.+++.+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~-~~~L~~l~l~~ 186 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFN-GTQLDELNLSD 186 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSST-TEEEEEEECTT
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcc-ccchhHHhhcc
Confidence 55555555544444444444455555533 334433333344432 3445555555554 44444332 34455555543
Q ss_pred -CcccccCC-cccCCCCCCCEEEccCCcCC
Q 036375 749 -NAFSGEIP-SKLSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 749 -N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~ 776 (1009)
|.++ .+| ..|..+++|++||+++|+++
T Consensus 187 ~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 187 NNNLE-ELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp CTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred CCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence 2333 333 23455555555555555555
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.8e-19 Score=182.95 Aligned_cols=161 Identities=26% Similarity=0.373 Sum_probs=77.4
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
.++++|++++|.++ .++...+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34555555555554 33333444455555555555555544444444555555555555555544444444555555555
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS 752 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~ 752 (1009)
+++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+. +++|+.|+++.|+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC--------TTTTHHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC--------CCCHHHHHHHHHhCC
Confidence 555555544444444455555555555555544333444455555555555544321 233444444444444
Q ss_pred ccCCcccCCC
Q 036375 753 GEIPSKLSNL 762 (1009)
Q Consensus 753 ~~~p~~l~~l 762 (1009)
|.+|.+++.+
T Consensus 179 g~ip~~~~~l 188 (208)
T 2o6s_A 179 GVVRNSAGSV 188 (208)
T ss_dssp TTBBCTTSSB
T ss_pred ceeeccCccc
Confidence 4444444433
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3e-19 Score=182.68 Aligned_cols=109 Identities=29% Similarity=0.376 Sum_probs=46.2
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEc
Q 036375 667 FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSL 746 (1009)
Q Consensus 667 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L 746 (1009)
+|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.++ .+|...+..+++|+.|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEc
Confidence 4444444444444444444444444444444444444333333444444444444444444 222221112344444444
Q ss_pred cCCcccccCCcccCCCCCCCEEEccCCcCC
Q 036375 747 RSNAFSGEIPSKLSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 747 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 776 (1009)
++|++++..+..+..+++|++|++++|+++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 444443333333344444444444444444
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=7.8e-20 Score=188.33 Aligned_cols=157 Identities=22% Similarity=0.271 Sum_probs=129.8
Q ss_pred CEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCC-cccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIP-SKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI 795 (1009)
Q Consensus 717 ~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 795 (1009)
+++++++|.++ .+|..+ ...++.|++++|++++..| ..|..+++|++|++++|++++..|..|..+++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 46677777765 566543 3456777777777776644 346778888888888888887777777777766
Q ss_pred hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCC
Q 036375 796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ 875 (1009)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 875 (1009)
+.|+|++|++++..|..|.++++|++|+|++|++++.+|..|.++++
T Consensus 84 ---------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 84 ---------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp ---------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred ---------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 78888888888888888999999999999999999999999999999
Q ss_pred CCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCCC
Q 036375 876 LASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIPF 916 (1009)
Q Consensus 876 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 916 (1009)
|++|+|++|++++..|..|..+++|++|++++|++++..+.
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999999999999999999999999999999999987663
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=2.6e-18 Score=176.93 Aligned_cols=155 Identities=22% Similarity=0.296 Sum_probs=130.3
Q ss_pred CEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchh
Q 036375 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIV 796 (1009)
Q Consensus 717 ~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 796 (1009)
+.+++++|.++ .+|..+ .++++.|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 46677777776 666653 3577888888888876666678888888888888888888778888777766
Q ss_pred hhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCC
Q 036375 797 KYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQL 876 (1009)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 876 (1009)
++|+|++|+|++..+..|.++++|++|+|++|++++..|..|.++++|
T Consensus 83 --------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 130 (220)
T 2v9t_B 83 --------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130 (220)
T ss_dssp --------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred --------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence 788888888887767778899999999999999999999999999999
Q ss_pred CEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecC
Q 036375 877 ASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKI 914 (1009)
Q Consensus 877 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 914 (1009)
++|+|++|++++..+..|..+++|++|++++|++....
T Consensus 131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 99999999999988888999999999999999997643
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=8.1e-18 Score=174.47 Aligned_cols=156 Identities=25% Similarity=0.283 Sum_probs=130.9
Q ss_pred CCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375 716 LETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI 795 (1009)
Q Consensus 716 L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 795 (1009)
-+.++.+++.+. .+|..+ .++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|..++.|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------ 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------ 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence 456777777776 677654 4778888888888887778888888888888888888876666666777766
Q ss_pred hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCC
Q 036375 796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ 875 (1009)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 875 (1009)
+.|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++
T Consensus 91 ---------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 136 (229)
T 3e6j_A 91 ---------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH 136 (229)
T ss_dssp ---------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT
T ss_pred ---------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC
Confidence 78899999998887888899999999999999999 77888999999
Q ss_pred CCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecCC
Q 036375 876 LASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKIP 915 (1009)
Q Consensus 876 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 915 (1009)
|++|+|++|++++..+..|..+++|++|++++|++++..+
T Consensus 137 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9999999999998888889999999999999999987765
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=7.8e-18 Score=181.49 Aligned_cols=187 Identities=27% Similarity=0.380 Sum_probs=111.0
Q ss_pred eEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCc
Q 036375 646 VIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNR 725 (1009)
Q Consensus 646 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 725 (1009)
.+.+..+.+++.. .+..+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|.
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 3445555554332 234566677777777766643 2 35666666666666666664332 5666666666666666
Q ss_pred ccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccc
Q 036375 726 FSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYR 805 (1009)
Q Consensus 726 l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~ 805 (1009)
+++ +|. +..+++|++|++++|++++. ..+..+++|
T Consensus 102 l~~-~~~--------------------------l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L---------------- 136 (291)
T 1h6t_A 102 VKD-LSS--------------------------LKDLKKLKSLSLEHNGISDI--NGLVHLPQL---------------- 136 (291)
T ss_dssp CCC-GGG--------------------------GTTCTTCCEEECTTSCCCCC--GGGGGCTTC----------------
T ss_pred CCC-Chh--------------------------hccCCCCCEEECCCCcCCCC--hhhcCCCCC----------------
Confidence 552 322 44445555555555555432 223333333
Q ss_pred cceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCc
Q 036375 806 GIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNN 885 (1009)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 885 (1009)
+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|+
T Consensus 137 -----------------------~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 137 -----------------------ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp -----------------------CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred -----------------------CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 5555555655543 456667777777777777776554 7777777777777777
Q ss_pred CCCCCcccccCCCCCCeEeCCCCccee
Q 036375 886 LSGGIPSSLSSLSFLGYINLSRNQLSG 912 (1009)
Q Consensus 886 l~~~ip~~l~~l~~L~~L~ls~N~l~g 912 (1009)
+++. | .+..+++|++|++++|+++.
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccC
Confidence 7753 3 36777777777777777765
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=4.4e-18 Score=183.49 Aligned_cols=146 Identities=27% Similarity=0.330 Sum_probs=112.0
Q ss_pred ccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 036375 620 LIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699 (1009)
Q Consensus 620 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 699 (1009)
+..+.+..+.+++.. .+..+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 444556666666543 345789999999999999865 3 58999999999999999997655 89999999999999
Q ss_pred ccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCC
Q 036375 700 NKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGS 778 (1009)
Q Consensus 700 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 778 (1009)
|++++ + ..+..+++|++|++++|.+++ ++ .+. .+++|+.|++++|++++. ..+..+++|++|++++|++++.
T Consensus 100 n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 100 NKVKD-L-SSLKDLKKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp SCCCC-G-GGGTTCTTCCEEECTTSCCCC-CG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CcCCC-C-hhhccCCCCCEEECCCCcCCC-Ch-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 99986 3 458999999999999999984 44 333 377777777777777643 3566666666666666666543
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.1e-17 Score=197.82 Aligned_cols=130 Identities=28% Similarity=0.392 Sum_probs=60.0
Q ss_pred cCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEE
Q 036375 640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL 719 (1009)
Q Consensus 640 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 719 (1009)
.+++|+.|++++|.+... + .+..+++|+.|+|++|++++..| +..+++|+.|+|++|.+++ +| .+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 344444444444444422 1 24444445555555554443322 4444455555555554443 11 34445555555
Q ss_pred ECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCC
Q 036375 720 DLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP 780 (1009)
Q Consensus 720 ~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 780 (1009)
+|++|.+.+ +|. +. .+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++..|
T Consensus 115 ~Ls~N~l~~-l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 115 SLEHNGISD-ING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp ECTTSCCCC-CGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred EecCCCCCC-Ccc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 555555442 222 22 245555555555555432 334555555555555555554433
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=169.95 Aligned_cols=138 Identities=27% Similarity=0.280 Sum_probs=80.9
Q ss_pred CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEEC
Q 036375 594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL 673 (1009)
Q Consensus 594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 673 (1009)
.++.|++++|.+++..+...+..+++|++|++++|++++..+.+|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34556666666654444444555566666666666666555555666666666666666665555555556666666666
Q ss_pred CCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCc
Q 036375 674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIP 731 (1009)
Q Consensus 674 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip 731 (1009)
++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++.+..+
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 6666665555555566666666666666665555555556666666666665554433
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=5.7e-18 Score=188.98 Aligned_cols=177 Identities=28% Similarity=0.242 Sum_probs=96.7
Q ss_pred CEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhc-CCCCCCEEECcCCcccccCchhhhhcCcCCcEEEcc
Q 036375 669 KVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQ-NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLR 747 (1009)
Q Consensus 669 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~ 747 (1009)
+.+++++++++. +|..+. +.++.|+|++|++++..+..|. .+++|++|+|++|++++..|..+. .+++|+.|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECC
Confidence 466777777663 454332 3466666666666655555554 556666666666665532222222 34555555555
Q ss_pred CCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCc
Q 036375 748 SNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRL 827 (1009)
Q Consensus 748 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1009)
+|++++..+..|..+++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~------------------------------------------------------------ 116 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEV------------------------------------------------------------ 116 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCE------------------------------------------------------------
T ss_pred CCcCCcCCHHHhCCCcCCCE------------------------------------------------------------
Confidence 55554443444444444444
Q ss_pred eeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCc---cCCCCCCEEeCCCCcCCCCCcccccCCCC--CCe
Q 036375 828 FHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENI---SGLHQLASLDLSSNNLSGGIPSSLSSLSF--LGY 902 (1009)
Q Consensus 828 l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~--L~~ 902 (1009)
|+|++|+|++..|..|.++++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+..+..++. ++.
T Consensus 117 ---L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~ 193 (361)
T 2xot_A 117 ---LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193 (361)
T ss_dssp ---EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTT
T ss_pred ---EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcce
Confidence 4555555554455555556666666666666665444444 44666666666666666555555655554 356
Q ss_pred EeCCCCccee
Q 036375 903 INLSRNQLSG 912 (1009)
Q Consensus 903 L~ls~N~l~g 912 (1009)
|++++|++..
T Consensus 194 l~l~~N~~~C 203 (361)
T 2xot_A 194 LYLHNNPLEC 203 (361)
T ss_dssp EECCSSCEEC
T ss_pred EEecCCCccC
Confidence 6666666653
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.3e-17 Score=186.12 Aligned_cols=179 Identities=25% Similarity=0.265 Sum_probs=153.0
Q ss_pred CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccc-cCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIG-EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
.-+.++++++.+. .+|..+ .+.++.|++++|++++..+..+. ++++|++|++++|++++..+..|.++++|++|+
T Consensus 19 ~~~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 19 ASNILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp ETTEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 3468899998887 677644 35689999999999988888887 899999999999999988888899999999999
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhh---hcCcCCcEEEccCC
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLG---NGFVGLRILSLRSN 749 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~---~~l~~L~~L~L~~N 749 (1009)
|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.++ .+|..++ ..+++|+.|+|++|
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSS
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCC
Confidence 9999999888888999999999999999999888889999999999999999998 6777654 34889999999999
Q ss_pred cccccCCcccCCCCC--CCEEEccCCcCCC
Q 036375 750 AFSGEIPSKLSNLSS--LQVLDLAENNLTG 777 (1009)
Q Consensus 750 ~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~ 777 (1009)
++++..+..+..++. ++.|++++|++..
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 998665566777776 4889999999874
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.1e-17 Score=197.62 Aligned_cols=190 Identities=28% Similarity=0.380 Sum_probs=137.9
Q ss_pred CCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcC
Q 036375 644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723 (1009)
Q Consensus 644 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 723 (1009)
+..+.+..+.+.+..+ +..++.|+.|++++|.+... | .+..+++|+.|+|++|++++..| +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4455666666665433 56778888889998888754 3 57888888888888888886544 78888888888888
Q ss_pred CcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccc
Q 036375 724 NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGR 803 (1009)
Q Consensus 724 N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~ 803 (1009)
|.+. .+| .+. .+++|+.|+|++|.+++ + ..+..+++|+.|+|++|++++. ..+..++.|
T Consensus 97 N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L-------------- 155 (605)
T 1m9s_A 97 NKIK-DLS-SLK-DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-------------- 155 (605)
T ss_dssp SCCC-CCT-TST-TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC--------------
T ss_pred CCCC-CCh-hhc-cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCC--------------
Confidence 8887 344 343 47888888888888875 2 3477788888888888887764 345555544
Q ss_pred cccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCC
Q 036375 804 YRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSS 883 (1009)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 883 (1009)
+.|+|++|.+++..| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++
T Consensus 156 -------------------------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 156 -------------------------DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 206 (605)
T ss_dssp -------------------------SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCS
T ss_pred -------------------------CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccC
Confidence 677777777777666 77777777777777777764 3477777777777777
Q ss_pred CcCCCC
Q 036375 884 NNLSGG 889 (1009)
Q Consensus 884 N~l~~~ 889 (1009)
|++++.
T Consensus 207 N~l~~~ 212 (605)
T 1m9s_A 207 QECLNK 212 (605)
T ss_dssp EEEECC
T ss_pred CcCcCC
Confidence 777764
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=7.6e-18 Score=169.38 Aligned_cols=133 Identities=26% Similarity=0.330 Sum_probs=100.4
Q ss_pred cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCCh-hhhhhhhhhhccchhhhhhccccccceeeceEEEeecCC
Q 036375 742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPG-SVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGS 820 (1009)
Q Consensus 742 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1009)
+.+++++|.++ .+|..+.. +|++|++++|++++..|. .++.++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L------------------------------- 56 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL------------------------------- 56 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence 45555555553 45544432 677777777777665553 35666655
Q ss_pred CCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCC
Q 036375 821 SKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFL 900 (1009)
Q Consensus 821 ~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 900 (1009)
+.|+|++|+|++..|..|.++++|++|+|++|+|++.+|..|+++++|++|+|++|++++.+|..+..+++|
T Consensus 57 --------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (192)
T 1w8a_A 57 --------VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128 (192)
T ss_dssp --------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred --------CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence 777788888887778888888888888888888888888888888888888888888888888888888888
Q ss_pred CeEeCCCCcceecCCC
Q 036375 901 GYINLSRNQLSGKIPF 916 (1009)
Q Consensus 901 ~~L~ls~N~l~g~ip~ 916 (1009)
++|++++|+++|.+|.
T Consensus 129 ~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 129 TSLNLASNPFNCNCHL 144 (192)
T ss_dssp CEEECTTCCBCCSGGG
T ss_pred CEEEeCCCCccCcCcc
Confidence 8888888888887663
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.5e-19 Score=212.37 Aligned_cols=203 Identities=24% Similarity=0.235 Sum_probs=117.2
Q ss_pred cCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEE
Q 036375 640 EMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETL 719 (1009)
Q Consensus 640 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 719 (1009)
.++.|+.|++++|+++ .+|..+++|++|+.|++++|......|.. +..+...+..|..+..+++|+.|
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcccC
Confidence 3455555555555554 44555555555555555444311111100 00111344556666666666666
Q ss_pred E-CcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhh
Q 036375 720 D-LGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKY 798 (1009)
Q Consensus 720 ~-L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~ 798 (1009)
+ ++.|.+. .|+.+.+++|.+++..+ ..|+.|++++|++++ +|. ++.+++|
T Consensus 415 ~~l~~n~~~------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L--------- 465 (567)
T 1dce_A 415 DPMRAAYLD------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV--------- 465 (567)
T ss_dssp CGGGHHHHH------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC---------
T ss_pred cchhhcccc------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC---------
Confidence 6 4544332 22223334444442211 136667777777765 454 6665555
Q ss_pred hhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCE
Q 036375 799 LLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLAS 878 (1009)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 878 (1009)
+.|+|++|+|+ .+|..++++++|+.|+|++|+|++ +| .++++++|+.
T Consensus 466 ------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~ 512 (567)
T 1dce_A 466 ------------------------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQE 512 (567)
T ss_dssp ------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCE
T ss_pred ------------------------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcE
Confidence 66777777777 667777777777777777777776 44 6777777777
Q ss_pred EeCCCCcCCCCC-cccccCCCCCCeEeCCCCcceecCCC
Q 036375 879 LDLSSNNLSGGI-PSSLSSLSFLGYINLSRNQLSGKIPF 916 (1009)
Q Consensus 879 L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ip~ 916 (1009)
|+|++|+|++.+ |..++.+++|++|++++|++++.+|.
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 777777777665 77777777777777777777776654
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=7.6e-17 Score=165.88 Aligned_cols=133 Identities=28% Similarity=0.326 Sum_probs=65.9
Q ss_pred CCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcC
Q 036375 644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGN 723 (1009)
Q Consensus 644 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 723 (1009)
++.|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 44444444444444333444444444444444444444444444444444444444444433333344445555555555
Q ss_pred CcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCC
Q 036375 724 NRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG 777 (1009)
Q Consensus 724 N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 777 (1009)
|++++..|..+. .+++|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 114 N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 114 NKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 555433333333 35555555555555554444556666667777777776653
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=2.3e-16 Score=163.52 Aligned_cols=137 Identities=24% Similarity=0.236 Sum_probs=99.4
Q ss_pred CCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEEC
Q 036375 642 QLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDL 721 (1009)
Q Consensus 642 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 721 (1009)
++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 55666666666666666666666777777777777776555566667777777777777777665666677777777777
Q ss_pred cCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCC
Q 036375 722 GNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIP 780 (1009)
Q Consensus 722 ~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 780 (1009)
++|+++ .+|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 120 s~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 777777 6777665 47888888888888876666678888899999999999886543
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=9.1e-18 Score=203.76 Aligned_cols=224 Identities=23% Similarity=0.257 Sum_probs=124.3
Q ss_pred CCccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 593 VEIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
+.++.|++.+|.+.. ++. ..++.++|+.|.+. .++++.|.+. ..+..+..++.|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~------~~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ------ALLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCc-chh------hHhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEE
Confidence 345666666665542 221 23444455544433 3344455555 5677889999999999
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc
Q 036375 673 LSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS 752 (1009)
Q Consensus 673 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~ 752 (1009)
|++|++. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+.. +++|+.|+|++|.++
T Consensus 231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMVT 306 (727)
T ss_dssp CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSSCCC
T ss_pred CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCCCCC
Confidence 9999998 66777778999999999999999 78999999999999999999998 88998874 999999999999997
Q ss_pred ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEE
Q 036375 753 GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFID 832 (1009)
Q Consensus 753 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 832 (1009)
.+|..|..+++|++|+|++|++++.+|..+..+.... ..++
T Consensus 307 -~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~--------------------------------------~~l~ 347 (727)
T 4b8c_D 307 -TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG--------------------------------------LIFY 347 (727)
T ss_dssp -CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH--------------------------------------HHHH
T ss_pred -ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh--------------------------------------hHHh
Confidence 7888899999999999999999999998887764331 2357
Q ss_pred ccCCccCCCCCccccCcCCCCeEEccCC--------cccccCCCCccCCCCCCEEeCCCCcCC
Q 036375 833 LSGNNLHGDFPTQLTKLVGLVVLNLSRN--------HIGGQIPENISGLHQLASLDLSSNNLS 887 (1009)
Q Consensus 833 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 887 (1009)
|++|.++|.+|..+ +.|++++| .+.+.++..+..+..++...+++|.+.
T Consensus 348 l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 348 LRDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred hccCcccCcCcccc------ceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 88999999888754 45667766 445555555666677777777888775
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.1e-18 Score=204.93 Aligned_cols=196 Identities=21% Similarity=0.209 Sum_probs=131.3
Q ss_pred cCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCC
Q 036375 687 GQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQ 766 (1009)
Q Consensus 687 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 766 (1009)
..++.|+.|+|++|+++ .+|..++.+++|+.|++++|.....+|..+. .+...+.+|..+..+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------------~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR------------ALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------HHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHH------------hcccccCCHHHHHHHHhcc
Confidence 34566666666666665 5666666666676666655542212221111 1123345555566666666
Q ss_pred EEE-ccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCcc
Q 036375 767 VLD-LAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQ 845 (1009)
Q Consensus 767 ~L~-Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~ 845 (1009)
.|+ ++.|.+. +++.+....+....+. +..++.|+|++|+|++ +|.
T Consensus 413 ~L~~l~~n~~~--------~L~~l~l~~n~i~~l~------------------------~~~L~~L~Ls~n~l~~-lp~- 458 (567)
T 1dce_A 413 AVDPMRAAYLD--------DLRSKFLLENSVLKME------------------------YADVRVLHLAHKDLTV-LCH- 458 (567)
T ss_dssp HHCGGGHHHHH--------HHHHHHHHHHHHHHHH------------------------HTTCSEEECTTSCCSS-CCC-
T ss_pred cCcchhhcccc--------hhhhhhhhcccccccC------------------------ccCceEEEecCCCCCC-CcC-
Confidence 666 5555432 2222111000000000 0024889999999997 676
Q ss_pred ccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceecC-CCC-CCCCcc
Q 036375 846 LTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGKI-PFE-GHMTTF 923 (1009)
Q Consensus 846 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i-p~~-~~~~~~ 923 (1009)
++++++|+.|+|++|+|+ .+|..++++++|+.|+|++|+|++ +| .++.+++|++|++++|++++.+ |.. ..+..+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence 999999999999999999 789999999999999999999997 77 8999999999999999999986 653 445556
Q ss_pred cCCcCCCCC
Q 036375 924 DASSFAGNP 932 (1009)
Q Consensus 924 ~~~~~~~n~ 932 (1009)
....+.+|+
T Consensus 536 ~~L~L~~N~ 544 (567)
T 1dce_A 536 VLLNLQGNS 544 (567)
T ss_dssp CEEECTTSG
T ss_pred CEEEecCCc
Confidence 666677774
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=5e-17 Score=164.34 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=50.2
Q ss_pred eEEEccCCccCCCCCccccCcCCCCeEEccCCc-ccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCC
Q 036375 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNH-IGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSR 907 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 907 (1009)
+.|+|++|++++..|..++.+++|++|++++|+ ++ .+| .+..+++|++|++++|++++. + .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeC
Confidence 555555555555555666666677777777776 44 334 567777777777777777753 3 667777777777777
Q ss_pred Ccce
Q 036375 908 NQLS 911 (1009)
Q Consensus 908 N~l~ 911 (1009)
|++.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 7764
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=7.1e-18 Score=204.68 Aligned_cols=227 Identities=22% Similarity=0.280 Sum_probs=129.0
Q ss_pred CCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEc
Q 036375 618 PNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHL 697 (1009)
Q Consensus 618 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 697 (1009)
+.++.|++.+|.+... + ...|+.++|+.|.+. .++++.|++. ..|..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~~-~-----~~~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-N-----QALLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-h-----hhHhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEEC
Confidence 3455666666555532 1 122444555555443 2344456655 56788999999999999
Q ss_pred cCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCC
Q 036375 698 NNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG 777 (1009)
Q Consensus 698 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 777 (1009)
++|.+. .+|..+..+++|++|+|++|.++ .+|..+. .+++|+.|+|++|.++ .+|..+..+++|++|+|++|.|+
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~- 306 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence 999998 67878889999999999999999 9998887 4999999999999999 88999999999999999999997
Q ss_pred CCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCC-CeEE
Q 036375 778 SIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGL-VVLN 856 (1009)
Q Consensus 778 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L-~~L~ 856 (1009)
.+|..|+++++| +.|+|++|.|++.+|..+..+... ..|+
T Consensus 307 ~lp~~~~~l~~L---------------------------------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 307 TLPWEFGNLCNL---------------------------------------QFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp CCCSSTTSCTTC---------------------------------------CCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccChhhhcCCCc---------------------------------------cEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 778889888887 889999999999999988765322 3489
Q ss_pred ccCCcccccCCCCccCCCCCCEEeCCCC--------cCCCCCcccccCCCCCCeEeCCCCcceecCC
Q 036375 857 LSRNHIGGQIPENISGLHQLASLDLSSN--------NLSGGIPSSLSSLSFLGYINLSRNQLSGKIP 915 (1009)
Q Consensus 857 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 915 (1009)
|++|.++|.+|.. |+.|++++| .+.+.++..+.++..+....+++|-+.+...
T Consensus 348 l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 348 LRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp HHHCCCCCCCCCC-----------------------------------------------CCCGGGC
T ss_pred hccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 9999999999875 456677777 5566666667778888889999999875544
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4e-17 Score=173.01 Aligned_cols=168 Identities=22% Similarity=0.318 Sum_probs=96.7
Q ss_pred CCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEc
Q 036375 691 RLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDL 770 (1009)
Q Consensus 691 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 770 (1009)
+++.+++++|.+++. + .+..+++|++|++++|.++ .+| .+. .+++|+.|++++|++++..+ +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 344444444444422 1 3444455555555555544 344 222 25555555555555553322 555556666666
Q ss_pred cCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcC
Q 036375 771 AENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLV 850 (1009)
Q Consensus 771 s~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~ 850 (1009)
++|++++. |.... + .++.|+|++|++++. +.+..++
T Consensus 93 ~~N~l~~l-~~~~~--~---------------------------------------~L~~L~L~~N~l~~~--~~l~~l~ 128 (263)
T 1xeu_A 93 NRNRLKNL-NGIPS--A---------------------------------------CLSRLFLDNNELRDT--DSLIHLK 128 (263)
T ss_dssp CSSCCSCC-TTCCC--S---------------------------------------SCCEEECCSSCCSBS--GGGTTCT
T ss_pred CCCccCCc-Ccccc--C---------------------------------------cccEEEccCCccCCC--hhhcCcc
Confidence 66655542 21100 1 225666666666653 2467777
Q ss_pred CCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcceec
Q 036375 851 GLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLSGK 913 (1009)
Q Consensus 851 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 913 (1009)
+|+.|+|++|++++. | .++.+++|+.|++++|++++. ..+..+++|++|++++|++++.
T Consensus 129 ~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 129 NLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 777777777777765 2 577777788888888877765 5677777888888888877765
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.5e-17 Score=176.25 Aligned_cols=123 Identities=24% Similarity=0.372 Sum_probs=60.3
Q ss_pred CCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECc
Q 036375 643 LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLG 722 (1009)
Q Consensus 643 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 722 (1009)
++..+++++|.+++.. .+..+++|++|++++|+++. +| .+..+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444444555544322 34445555555555555542 22 34555555555555555553322 5555555555555
Q ss_pred CCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCC
Q 036375 723 NNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTG 777 (1009)
Q Consensus 723 ~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 777 (1009)
+|+++ .+|... .++|+.|++++|++++. + .+..+++|+.|++++|++++
T Consensus 94 ~N~l~-~l~~~~---~~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 94 RNRLK-NLNGIP---SACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp SSCCS-CCTTCC---CSSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCB
T ss_pred CCccC-CcCccc---cCcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCC
Confidence 55554 233221 14555555555555432 2 35555555555555555554
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.1e-16 Score=160.92 Aligned_cols=132 Identities=25% Similarity=0.299 Sum_probs=109.9
Q ss_pred CEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCc-ccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPS-KLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI 795 (1009)
Q Consensus 717 ~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 795 (1009)
+++++++|.++ .+|..+ ..+++.|++++|++++..+. .+..+++|++|++++|++++..|..|..++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 56777777775 677654 34777888888887765554 37788888888888888888888888877776
Q ss_pred hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCC
Q 036375 796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ 875 (1009)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 875 (1009)
+.|+|++|+|++..|..|.++++|++|+|++|++++.+|..|..+++
T Consensus 81 ---------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (192)
T 1w8a_A 81 ---------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127 (192)
T ss_dssp ---------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT
T ss_pred ---------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC
Confidence 78889999999888888999999999999999999999999999999
Q ss_pred CCEEeCCCCcCCCCCc
Q 036375 876 LASLDLSSNNLSGGIP 891 (1009)
Q Consensus 876 L~~L~Ls~N~l~~~ip 891 (1009)
|++|+|++|.+++..+
T Consensus 128 L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 128 LTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEEECTTCCBCCSGG
T ss_pred CCEEEeCCCCccCcCc
Confidence 9999999999998765
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.5e-16 Score=159.20 Aligned_cols=154 Identities=15% Similarity=0.233 Sum_probs=115.1
Q ss_pred CCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 036375 616 SMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL 695 (1009)
Q Consensus 616 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 695 (1009)
.+++|++|++++|.++. +| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..|..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45667777777777773 33 57777888888888886653 3467788888888888888887777788888888888
Q ss_pred EccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 036375 696 HLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775 (1009)
Q Consensus 696 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 775 (1009)
++++|++++..|..+..+++|++|++++|++.+.+| .+. .+++|+.|++++|++++ ++ .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~-~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLK-TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGG-GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhc-CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 888888887777888888888888888887334666 344 48888888888888875 33 677888888888888887
Q ss_pred CC
Q 036375 776 TG 777 (1009)
Q Consensus 776 ~~ 777 (1009)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 54
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=4.8e-16 Score=171.07 Aligned_cols=261 Identities=16% Similarity=0.152 Sum_probs=173.3
Q ss_pred CCCccEEEccCCcCC--CcCCchhhcCCCCccEEEccCCcccccCCccccc--------CCCCCeEEccCCcCCccCcCc
Q 036375 592 IVEIELLDLSNNHFS--GPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGE--------MQLLQVIDLSRNSISGSISSS 661 (1009)
Q Consensus 592 ~~~L~~L~Ls~n~l~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~ 661 (1009)
+++|+.|||++|++. ...+ +.++.+..+.+..|. +.+.+|.+ |++|+.+++.+ .++.+.+.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~----~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA----GTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS----SSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEEecCcc----ccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 467888888888876 1111 122224445555553 23455666 88888888888 777777778
Q ss_pred ccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCcc----ccCCCchhhcCCCCCC-EEECcCCcccccCchhhhh
Q 036375 662 IGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNK----LTGNLPSSFQNLTSLE-TLDLGNNRFSGNIPSLLGN 736 (1009)
Q Consensus 662 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~----l~~~~p~~~~~l~~L~-~L~L~~N~l~~~ip~~l~~ 736 (1009)
|.+|++|+.+++++|.+..+.+.+|..+.++..+.+..+. .......+|.++..|+ .+.+... +.++..++.
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~ 196 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMK 196 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHH
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhh
Confidence 8888888888888888887777888887777777766532 2223345566777777 5555443 244444432
Q ss_pred c---CcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceE
Q 036375 737 G---FVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENL 813 (1009)
Q Consensus 737 ~---l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1009)
. ..+++.+.+.++-.......-...+++|+.+++++|+++...+..|.++++|
T Consensus 197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L------------------------ 252 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL------------------------ 252 (329)
T ss_dssp TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC------------------------
T ss_pred cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC------------------------
Confidence 2 4455666655442211111111236778888888887776555667777766
Q ss_pred EEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCC-eEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcc
Q 036375 814 VINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLV-VLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPS 892 (1009)
Q Consensus 814 ~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 892 (1009)
+.|+|++| ++..-+.+|.++++|+ .+++++ +++.+.+.+|.++++|+.+++++|+++...+.
T Consensus 253 ---------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 253 ---------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp ---------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred ---------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh
Confidence 67777777 6666667788888888 888887 77767778888888888888888888877777
Q ss_pred cccCCCCCCeEe
Q 036375 893 SLSSLSFLGYIN 904 (1009)
Q Consensus 893 ~l~~l~~L~~L~ 904 (1009)
.|.++++|++++
T Consensus 316 aF~~~~~L~~ly 327 (329)
T 3sb4_A 316 LFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTCCCCEEE
T ss_pred hhcCCcchhhhc
Confidence 888888888775
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=5.7e-16 Score=170.48 Aligned_cols=285 Identities=9% Similarity=0.040 Sum_probs=196.7
Q ss_pred CCCccEEEccCCcccCCCCchhhhccCcccEEEecccccc--ccCCCCCCCCCcCeEeccCCCCCCCCCCCCCCccEEEc
Q 036375 523 QQGVSFLDFSNASISGPIPNWFWDISSKLSLLNVSLNQLQ--GQLPNPLNIAPFADVDFRSNLLEGPIPLPIVEIELLDL 600 (1009)
Q Consensus 523 ~~~L~~L~ls~n~i~~~~p~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~L 600 (1009)
+++++.|+++++ +....-..+...+++|+.|+|++|++. ...+.. ++.+..+.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~-----------------------~~~~~~~~~ 79 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT-----------------------YPNGKFYIY 79 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS-----------------------SGGGCCEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc-----------------------ccccccccc
Confidence 445667776653 111111223333567888888888876 111111 111233334
Q ss_pred cCCcCCCcCCchhhcC--------CCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEE
Q 036375 601 SNNHFSGPIPQNISGS--------MPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLD 672 (1009)
Q Consensus 601 s~n~l~~~ip~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 672 (1009)
..| .+|+..|.. +++|+.+++.+ .++.+.+.+|.+|++|+.+++++|.+..+.+.+|.++.++..+.
T Consensus 80 ~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 80 MAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp CTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred ccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 443 566677777 99999999999 88888888999999999999999999888888999988888887
Q ss_pred CCCCc----CcccCCccccCCCCCC-EEEccCccccCCCchhhc----CCCCCCEEECcCCcccccCchhhhhcCcCCcE
Q 036375 673 LSYSS----LSGVIPASLGQLTRLQ-SLHLNNNKLTGNLPSSFQ----NLTSLETLDLGNNRFSGNIPSLLGNGFVGLRI 743 (1009)
Q Consensus 673 Ls~N~----l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~----~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~ 743 (1009)
...+. .....+.+|.++..|+ .+.+.... .++..+. ...+++.+.+.++-.. .-...+...+++|+.
T Consensus 155 ~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~ 230 (329)
T 3sb4_A 155 LGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVS 230 (329)
T ss_dssp TTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCE
T ss_pred CcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeE
Confidence 76632 2333445677777777 55554422 2232221 2455666766655322 222233334788888
Q ss_pred EEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCC
Q 036375 744 LSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKD 823 (1009)
Q Consensus 744 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1009)
+++++|+++...+..|.++++|+.|++.+| ++..-+..|.++++|
T Consensus 231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L---------------------------------- 275 (329)
T 3sb4_A 231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL---------------------------------- 275 (329)
T ss_dssp EECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC----------------------------------
T ss_pred EECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc----------------------------------
Confidence 888888888666667888888999999887 666656677777776
Q ss_pred CCCcee-EEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeC
Q 036375 824 TPRLFH-FIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDL 881 (1009)
Q Consensus 824 ~~~~l~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 881 (1009)
+ .+++++ +++..-+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus 276 -----~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 276 -----AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -----CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -----cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 6 778877 777677789999999999999999999888889999999998864
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=4.1e-15 Score=149.26 Aligned_cols=131 Identities=23% Similarity=0.336 Sum_probs=106.9
Q ss_pred cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCC
Q 036375 742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS 821 (1009)
Q Consensus 742 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1009)
+.+++++|.++ .+|..+. ++|++|++++|+++ .+|..+.+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L-------------------------------- 56 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL-------------------------------- 56 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence 45666666665 4554432 46778888888877 566777666666
Q ss_pred CCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCC
Q 036375 822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLG 901 (1009)
Q Consensus 822 ~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 901 (1009)
+.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|+
T Consensus 57 -------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 57 -------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp -------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred -------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence 7888888888888888899999999999999999999999999999999999999999987777899999999
Q ss_pred eEeCCCCcceecCC
Q 036375 902 YINLSRNQLSGKIP 915 (1009)
Q Consensus 902 ~L~ls~N~l~g~ip 915 (1009)
+|++++|++.+..+
T Consensus 130 ~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 130 HLAIGANPLYCDCN 143 (193)
T ss_dssp EEECCSSCEECSGG
T ss_pred EEEeCCCCeecCCc
Confidence 99999999986543
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=5.1e-15 Score=146.75 Aligned_cols=132 Identities=24% Similarity=0.274 Sum_probs=95.3
Q ss_pred cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCC
Q 036375 742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS 821 (1009)
Q Consensus 742 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1009)
+.+++++|+++ .+|..+ .++|+.|++++|++++..+..+..+++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------- 54 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL-------------------------------- 54 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc--------------------------------
Confidence 44555555554 333322 2456666666666665555555555554
Q ss_pred CCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCC
Q 036375 822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLG 901 (1009)
Q Consensus 822 ~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 901 (1009)
+.|+|++|++++..+..++.+++|++|++++|++++.++..+..+++|++|++++|++++..+..+..+++|+
T Consensus 55 -------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 55 -------TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127 (177)
T ss_dssp -------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred -------cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence 6667777777766666678888888888888888888877888888999999999999877777778888999
Q ss_pred eEeCCCCcceecCC
Q 036375 902 YINLSRNQLSGKIP 915 (1009)
Q Consensus 902 ~L~ls~N~l~g~ip 915 (1009)
+|++++|+++|.+|
T Consensus 128 ~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 128 KIWLHTNPWDCSCP 141 (177)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEEecCCCeeccCc
Confidence 99999998888766
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=3.9e-14 Score=158.93 Aligned_cols=263 Identities=11% Similarity=0.088 Sum_probs=190.1
Q ss_pred CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEEC
Q 036375 594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL 673 (1009)
Q Consensus 594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 673 (1009)
.++.+.+.++ ++ .|+...|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+..+.+.+|.+|++|+.+++
T Consensus 114 ~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 114 GYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3444444432 33 5666667665 7899998776 777777888885 699999985 677677788999999999999
Q ss_pred CCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccc
Q 036375 674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSG 753 (1009)
Q Consensus 674 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~ 753 (1009)
++|+++.+...+|. +.+|+.+.+.++ ++..-..+|.+|++|+.+++.+| ++ .|+...+.+ .+|+.+.+. +.++.
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccE
Confidence 99999877677776 589999999854 77667788999999999999876 44 677776654 789999994 45665
Q ss_pred cCCcccCCCCCCCEEEccCCcCC-----CCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCce
Q 036375 754 EIPSKLSNLSSLQVLDLAENNLT-----GSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLF 828 (1009)
Q Consensus 754 ~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 828 (1009)
.-+..|.+|++|+.+++.+|.+. ...+..|.++++|
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L--------------------------------------- 302 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL--------------------------------------- 302 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC---------------------------------------
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC---------------------------------------
Confidence 55678889999999999888765 2333455555555
Q ss_pred eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC-CCCeEeCCC
Q 036375 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS-FLGYINLSR 907 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~ 907 (1009)
+.++|. +.++..-...|.++++|+.++|..| ++.+.+.+|.++ +|+.+++++|.+....+..|.+++ .++.+++..
T Consensus 303 ~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 303 ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 566666 3466555667777777777777544 665666777777 777777777777766666666663 566676666
Q ss_pred Ccc
Q 036375 908 NQL 910 (1009)
Q Consensus 908 N~l 910 (1009)
|.+
T Consensus 380 ~~~ 382 (401)
T 4fdw_A 380 ESV 382 (401)
T ss_dssp GGH
T ss_pred HHH
Confidence 543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.5e-15 Score=145.93 Aligned_cols=129 Identities=23% Similarity=0.274 Sum_probs=86.1
Q ss_pred CcCCcEEEccCCccc-ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEe
Q 036375 738 FVGLRILSLRSNAFS-GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVIN 816 (1009)
Q Consensus 738 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1009)
.++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..++.++.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------------------------- 66 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL--------------------------- 66 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC---------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC---------------------------
Confidence 345666666666665 55666666666666666666666654 334444443
Q ss_pred ecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCccccc-CCCCccCCCCCCEEeCCCCcCCCCCc---c
Q 036375 817 TKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQ-IPENISGLHQLASLDLSSNNLSGGIP---S 892 (1009)
Q Consensus 817 ~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ip---~ 892 (1009)
+.|+|++|.+++.+|..++.+++|++|++++|++++. .|..++.+++|++|++++|.+++..+ .
T Consensus 67 ------------~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 134 (149)
T 2je0_A 67 ------------KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN 134 (149)
T ss_dssp ------------CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHH
T ss_pred ------------CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHH
Confidence 6667777777766666666677777777777777764 34667777777777777777776655 4
Q ss_pred cccCCCCCCeEeCCC
Q 036375 893 SLSSLSFLGYINLSR 907 (1009)
Q Consensus 893 ~l~~l~~L~~L~ls~ 907 (1009)
.+..+++|++||+++
T Consensus 135 ~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 135 VFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEETTBC
T ss_pred HHHHCCCcccccCCC
Confidence 677777777777753
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=2e-15 Score=148.25 Aligned_cols=73 Identities=30% Similarity=0.427 Sum_probs=39.5
Q ss_pred CCCCEEECcCCccc-ccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhh
Q 036375 714 TSLETLDLGNNRFS-GNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAM 789 (1009)
Q Consensus 714 ~~L~~L~L~~N~l~-~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 789 (1009)
++|++|++++|.++ +.+|..+. .+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+.++++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 55666666666665 45555433 355666666666665543 445555555555555555555444444444433
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=5.5e-15 Score=145.14 Aligned_cols=134 Identities=25% Similarity=0.269 Sum_probs=109.9
Q ss_pred CcCCcEEEccCCccc-ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEe
Q 036375 738 FVGLRILSLRSNAFS-GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVIN 816 (1009)
Q Consensus 738 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1009)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..++.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------------------------- 73 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL--------------------------- 73 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC---------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC---------------------------
Confidence 577889999999887 67888888888999999999988865 455555555
Q ss_pred ecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccC-CCCccCCCCCCEEeCCCCcCCCCCc---c
Q 036375 817 TKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQI-PENISGLHQLASLDLSSNNLSGGIP---S 892 (1009)
Q Consensus 817 ~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~ip---~ 892 (1009)
+.|+|++|++++.+|..+.++++|++|+|++|++++.. +..+..+++|+.|++++|.+++..+ .
T Consensus 74 ------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 141 (168)
T 2ell_A 74 ------------KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRES 141 (168)
T ss_dssp ------------CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHH
T ss_pred ------------CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHH
Confidence 78899999998888888888889999999999988753 3778888999999999999987665 5
Q ss_pred cccCCCCCCeEeCCCCccee
Q 036375 893 SLSSLSFLGYINLSRNQLSG 912 (1009)
Q Consensus 893 ~l~~l~~L~~L~ls~N~l~g 912 (1009)
.+..+++|++||+++|.+..
T Consensus 142 ~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHTTCSSCCEETTEETTSCB
T ss_pred HHHhCccCcEecCCCCChhh
Confidence 78888999999999987753
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=144.82 Aligned_cols=129 Identities=24% Similarity=0.297 Sum_probs=104.0
Q ss_pred CEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchh
Q 036375 717 ETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIV 796 (1009)
Q Consensus 717 ~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~ 796 (1009)
+.+++++|.++ .+|..+ .++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..|..++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL------- 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence 45666666665 666543 356777777777776 566777788888888888888887777777777766
Q ss_pred hhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCC
Q 036375 797 KYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQL 876 (1009)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 876 (1009)
+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|
T Consensus 81 --------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (193)
T 2wfh_A 81 --------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128 (193)
T ss_dssp --------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred --------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc
Confidence 778888888888888889999999999999999998888889999999
Q ss_pred CEEeCCCCcCCCC
Q 036375 877 ASLDLSSNNLSGG 889 (1009)
Q Consensus 877 ~~L~Ls~N~l~~~ 889 (1009)
+.|+|++|.+...
T Consensus 129 ~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 129 SHLAIGANPLYCD 141 (193)
T ss_dssp CEEECCSSCEECS
T ss_pred cEEEeCCCCeecC
Confidence 9999999999753
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=2.4e-14 Score=141.84 Aligned_cols=133 Identities=20% Similarity=0.222 Sum_probs=108.2
Q ss_pred CCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccch
Q 036375 716 LETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNI 795 (1009)
Q Consensus 716 L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~ 795 (1009)
.+.+++++|.++ .+|..+ .++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..++.|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------ 78 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------ 78 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence 356777777766 566543 4677888888888876666667888888888888888887666667777666
Q ss_pred hhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCC
Q 036375 796 VKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQ 875 (1009)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 875 (1009)
+.|+|++|++++..+..+..+++|++|++++|++++.++..+..+++
T Consensus 79 ---------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 125 (177)
T 2o6r_A 79 ---------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125 (177)
T ss_dssp ---------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ---------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcc
Confidence 78899999999888888899999999999999999888888899999
Q ss_pred CCEEeCCCCcCCCCCc
Q 036375 876 LASLDLSSNNLSGGIP 891 (1009)
Q Consensus 876 L~~L~Ls~N~l~~~ip 891 (1009)
|++|++++|.+++..|
T Consensus 126 L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 126 LQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred cCEEEecCCCeeccCc
Confidence 9999999999998765
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.4e-14 Score=138.99 Aligned_cols=108 Identities=23% Similarity=0.319 Sum_probs=50.5
Q ss_pred CCccEEEccCCccc-ccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 036375 618 PNLIFLSVSGNRLT-GKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLH 696 (1009)
Q Consensus 618 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 696 (1009)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 44444444455555555555554433 3444444444444444444444444444444444444
Q ss_pred ccCccccCC-CchhhcCCCCCCEEECcCCccc
Q 036375 697 LNNNKLTGN-LPSSFQNLTSLETLDLGNNRFS 727 (1009)
Q Consensus 697 L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~ 727 (1009)
+++|++++. .+..+..+++|++|++++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 444444431 1234444444444444444444
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=6.4e-16 Score=156.35 Aligned_cols=127 Identities=24% Similarity=0.307 Sum_probs=73.6
Q ss_pred CcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEee
Q 036375 738 FVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINT 817 (1009)
Q Consensus 738 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1009)
+++|+.|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++|
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L---------------------------- 95 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL---------------------------- 95 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC----------------------------
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC----------------------------
Confidence 5555555555555553 44 4555556666666666655 445555555544
Q ss_pred cCCCCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCC-CCccCCCCCCEEeCCCCcCCCCCccc---
Q 036375 818 KGSSKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIP-ENISGLHQLASLDLSSNNLSGGIPSS--- 893 (1009)
Q Consensus 818 ~~~~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~--- 893 (1009)
+.|+|++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+++.+|..
T Consensus 96 -----------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 162 (198)
T 1ds9_A 96 -----------EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162 (198)
T ss_dssp -----------SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred -----------CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccch
Confidence 556666666664 33 45666666666666666664332 35566666666666666666655542
Q ss_pred -------ccCCCCCCeEeCCCCcc
Q 036375 894 -------LSSLSFLGYINLSRNQL 910 (1009)
Q Consensus 894 -------l~~l~~L~~L~ls~N~l 910 (1009)
+..+++|++|| +|++
T Consensus 163 ~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 163 SEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HHHHHHHHHHCSSCSEEC--CGGG
T ss_pred HHHHHHHHHhCCCcEEEC--Cccc
Confidence 56666666665 4444
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=5.6e-13 Score=149.51 Aligned_cols=242 Identities=13% Similarity=0.121 Sum_probs=189.8
Q ss_pred CccEEEccCCcCCCcCCchhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEEC
Q 036375 594 EIELLDLSNNHFSGPIPQNISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDL 673 (1009)
Q Consensus 594 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 673 (1009)
+|+.+++..+ +. .|+...|.++ +|+.+.+.+ .++.+.+.+|.+|++|+.+++++|+++......|. +.+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 5777777766 44 6777777764 699999986 67777788899999999999999988877667776 688999999
Q ss_pred CCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCccc-
Q 036375 674 SYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFS- 752 (1009)
Q Consensus 674 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~- 752 (1009)
..+ ++.+...+|.++++|+.+++..| ++..-..+|.+ .+|+.+++. +.++ .++...+.++++|+.+++.+|.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccC
Confidence 854 77677788999999999999875 55556677777 789999994 4455 677777777899999999888765
Q ss_pred ----ccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCce
Q 036375 753 ----GEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLF 828 (1009)
Q Consensus 753 ----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 828 (1009)
..-+..|.+|++|+.+++. +.++..-...|.++++|
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L--------------------------------------- 325 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV--------------------------------------- 325 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC---------------------------------------
T ss_pred CcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc---------------------------------------
Confidence 3455678899999999998 45765556677777766
Q ss_pred eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCC-CCCEEeCCCCcCC
Q 036375 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLH-QLASLDLSSNNLS 887 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~ 887 (1009)
+.++|..| ++..-+.+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+.
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 67778544 666667889999 999999999999888888888884 7889998887654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=2.1e-15 Score=152.58 Aligned_cols=153 Identities=24% Similarity=0.297 Sum_probs=109.8
Q ss_pred CCCCCEEEccCccccCCCch------hhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCC
Q 036375 689 LTRLQSLHLNNNKLTGNLPS------SFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNL 762 (1009)
Q Consensus 689 l~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l 762 (1009)
...++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+. .+++|+.|++++|.++ .+|..+..+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcC
Confidence 34455555555555554444 67777777777777777763 66 444 3777777777777776 566666666
Q ss_pred CCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCCCCCCCceeEEEccCCccCCCC
Q 036375 763 SSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSSKDTPRLFHFIDLSGNNLHGDF 842 (1009)
Q Consensus 763 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~~ 842 (1009)
++|++|++++|++++ +| .+..+++| +.|+|++|++++..
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L---------------------------------------~~L~l~~N~i~~~~ 131 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNL---------------------------------------RVLYMSNNKITNWG 131 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHS---------------------------------------SEEEESEEECCCHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCC---------------------------------------CEEECCCCcCCchh
Confidence 778888888888876 34 56666666 78888888888643
Q ss_pred C-ccccCcCCCCeEEccCCcccccCCCC----------ccCCCCCCEEeCCCCcCCC
Q 036375 843 P-TQLTKLVGLVVLNLSRNHIGGQIPEN----------ISGLHQLASLDLSSNNLSG 888 (1009)
Q Consensus 843 p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~Ls~N~l~~ 888 (1009)
+ ..+..+++|++|++++|.+++.+|.. +..+++|+.|| +|.++.
T Consensus 132 ~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 132 EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 3 57888999999999999999887764 88899999997 677764
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.46 E-value=2.5e-12 Score=145.06 Aligned_cols=157 Identities=12% Similarity=0.015 Sum_probs=77.6
Q ss_pred cCCccccCCCCCCEEEccCCcccccCchhhhcccCCCEEEcCCCcCCCCCCccccccccccCCCCCCCCCcEEECcCCcC
Q 036375 312 KLPSSVANMTSLTNFDLFDKKVEGGIPSSIARLCYLKEFDLSGNNLTGSLPEILQGTDLCVSSNSPLPSLISMRLGNNHL 391 (1009)
Q Consensus 312 ~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 391 (1009)
.....|.++++|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++......|. .+++|+.+.+..+ +
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~----------~c~~L~~i~~p~~-l 128 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFS----------GCYALKSILLPLM-L 128 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT----------TCTTCCCCCCCTT-C
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhc----------ccccchhhcccCc-e
Confidence 33455777777777777543 44444556777777777777543 2222222222 4555555544433 2
Q ss_pred cccCChhhcCCCCCCEEeCcCCcccccCCCCCCCCCCCcEEeCCCCcCCCCCCcccCCCCCCCEEEccCcccccccchhh
Q 036375 392 KGKLPEWLSQLENLVELTLSYNLLQGPIPASLGNLKNLTKLNLPGNQLNGTLPETLGSLPELSVLDVSSNSLTGIISEIH 471 (1009)
Q Consensus 392 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 471 (1009)
......+|..+..++....... ......+|.+|++|+.+.+.++. .......|.++++|+.+++..+ ++ .+....
T Consensus 129 ~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~ 203 (394)
T 4fs7_A 129 KSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYC 203 (394)
T ss_dssp CEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTT
T ss_pred eeecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchh
Confidence 2233334444433322222221 12233456666666666665432 2233344555666666666554 22 233344
Q ss_pred hccCCCCcEEeCCCC
Q 036375 472 FSRLSKLKFLGLSSN 486 (1009)
Q Consensus 472 ~~~l~~L~~L~L~~n 486 (1009)
|.++..|+.+.+..+
T Consensus 204 F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 204 FAECILLENMEFPNS 218 (394)
T ss_dssp TTTCTTCCBCCCCTT
T ss_pred hccccccceeecCCC
Confidence 555666655555443
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.46 E-value=1.4e-12 Score=147.11 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=17.1
Q ss_pred cccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCC
Q 036375 845 QLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLS 882 (1009)
Q Consensus 845 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 882 (1009)
+|.++++|+.+++..| ++.+...+|.++++|+.+++.
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 4444444444444443 433334445555555555444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=2.5e-13 Score=133.18 Aligned_cols=87 Identities=23% Similarity=0.216 Sum_probs=78.9
Q ss_pred eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 908 (1009)
+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|++++|
T Consensus 33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 77889999999888888999999999999999999888888899999999999999999888888999999999999999
Q ss_pred cceecCC
Q 036375 909 QLSGKIP 915 (1009)
Q Consensus 909 ~l~g~ip 915 (1009)
++++..+
T Consensus 113 ~~~c~c~ 119 (170)
T 3g39_A 113 PWDCACS 119 (170)
T ss_dssp CBCTTBG
T ss_pred CCCCCch
Confidence 9987765
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.9e-13 Score=133.83 Aligned_cols=106 Identities=23% Similarity=0.205 Sum_probs=48.6
Q ss_pred CCCccEEEccCCcccccCCcccccCC-CCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 036375 617 MPNLIFLSVSGNRLTGKIPGSIGEMQ-LLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSL 695 (1009)
Q Consensus 617 l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 695 (1009)
+++|++|++++|+++.. +. +..+. +|++|++++|.+++. ..+..+++|++|++++|++++..+..|..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 44455555555544432 22 22222 455555555555433 344445555555555555554333333444555555
Q ss_pred EccCccccCCCch--hhcCCCCCCEEECcCCccc
Q 036375 696 HLNNNKLTGNLPS--SFQNLTSLETLDLGNNRFS 727 (1009)
Q Consensus 696 ~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~ 727 (1009)
++++|+++ .+|. .+..+++|+.|++++|+++
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 55555543 2332 3444444444444444444
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2.9e-13 Score=133.79 Aligned_cols=133 Identities=21% Similarity=0.260 Sum_probs=113.7
Q ss_pred ccccCCCCCeEEccCCcCCccCcCcccCCC-CCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCC
Q 036375 637 SIGEMQLLQVIDLSRNSISGSISSSIGNCT-FLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTS 715 (1009)
Q Consensus 637 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 715 (1009)
.+..+.+|++|++++|+++.. |. +..+. +|++|++++|++++. ..+..+++|++|++++|++++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 466788999999999999954 54 55544 999999999999976 67899999999999999999765566799999
Q ss_pred CCEEECcCCcccccCch--hhhhcCcCCcEEEccCCcccccCCcc----cCCCCCCCEEEccCCcCC
Q 036375 716 LETLDLGNNRFSGNIPS--LLGNGFVGLRILSLRSNAFSGEIPSK----LSNLSSLQVLDLAENNLT 776 (1009)
Q Consensus 716 L~~L~L~~N~l~~~ip~--~l~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~ 776 (1009)
|++|++++|.+. .+|. .+. .+++|+.|++++|+++ .+|.. +..+++|+.||+++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999996 7776 555 5999999999999998 55664 889999999999999865
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=7.1e-13 Score=130.28 Aligned_cols=87 Identities=24% Similarity=0.230 Sum_probs=74.0
Q ss_pred eEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCC
Q 036375 829 HFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRN 908 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 908 (1009)
+.|+|++|+|++..|..|+++++|+.|+|++|+|++.++..|.++++|++|+|++|+|++..+..|..+++|++|++++|
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 77888888888888888888888999999999998877777888999999999999999777777888999999999999
Q ss_pred cceecCC
Q 036375 909 QLSGKIP 915 (1009)
Q Consensus 909 ~l~g~ip 915 (1009)
++....+
T Consensus 116 ~~~c~~~ 122 (174)
T 2r9u_A 116 PWDCECR 122 (174)
T ss_dssp CBCTTBG
T ss_pred Ccccccc
Confidence 8876544
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=1.9e-12 Score=126.85 Aligned_cols=109 Identities=22% Similarity=0.274 Sum_probs=86.4
Q ss_pred CcEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCC
Q 036375 741 LRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGS 820 (1009)
Q Consensus 741 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1009)
.+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.+++.|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L------------------------------- 56 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQL------------------------------- 56 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence 356666666665 3555442 677778888888877777777777666
Q ss_pred CCCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCc
Q 036375 821 SKDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIP 891 (1009)
Q Consensus 821 ~~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 891 (1009)
+.|||++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|.++...+
T Consensus 57 --------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 57 --------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp --------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred --------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 778888888887777778899999999999999998888889999999999999999987543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=4.2e-12 Score=124.73 Aligned_cols=106 Identities=21% Similarity=0.278 Sum_probs=84.2
Q ss_pred cEEEccCCcccccCCcccCCCCCCCEEEccCCcCCCCCChhhhhhhhhhhccchhhhhhccccccceeeceEEEeecCCC
Q 036375 742 RILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNLTGSIPGSVGDLKAMAHVQNIVKYLLFGRYRGIYYEENLVINTKGSS 821 (1009)
Q Consensus 742 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (1009)
+.+++++|.++ .+|..+. ++|++|++++|++++..|..|.+++.|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------- 59 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL-------------------------------- 59 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC--------------------------------
Confidence 45666666664 5555443 677778888888877777777777666
Q ss_pred CCCCCceeEEEccCCccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCC
Q 036375 822 KDTPRLFHFIDLSGNNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGG 889 (1009)
Q Consensus 822 ~~~~~~l~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 889 (1009)
+.|+|++|+|++..+..|.++++|++|+|++|+|++.++..|..+++|+.|+|++|.+...
T Consensus 60 -------~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 60 -------QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp -------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred -------CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 7788888888876666788999999999999999988877899999999999999999864
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.1e-13 Score=153.74 Aligned_cols=43 Identities=28% Similarity=0.265 Sum_probs=18.8
Q ss_pred ccCcCCCCeEEccCCccccc----CCCCccCCCCCCEEeCCCCcCCC
Q 036375 846 LTKLVGLVVLNLSRNHIGGQ----IPENISGLHQLASLDLSSNNLSG 888 (1009)
Q Consensus 846 l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 888 (1009)
+...++|+.|+|++|.|++. ++..+...++|++|||++|.|+.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 33344455555555554432 22223333445555555555443
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.23 E-value=9.9e-10 Score=123.75 Aligned_cols=133 Identities=17% Similarity=0.253 Sum_probs=68.2
Q ss_pred CcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCC
Q 036375 635 PGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLT 714 (1009)
Q Consensus 635 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 714 (1009)
..+|.++..|+.+.+.++.. .+...+|.+++.|+.+.+. +.++.+...+|.++.+|+.+++..+ ++..-..+|.+|+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 34555555566655544332 2344555666666666664 3344444455666666666666543 4434445666666
Q ss_pred CCCEEECcCCcccccCchhhhhcCcCCcEEEccCCcccccCCcccCCCCCCCEEEccCCcC
Q 036375 715 SLETLDLGNNRFSGNIPSLLGNGFVGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAENNL 775 (1009)
Q Consensus 715 ~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 775 (1009)
+|+.+.+..+ ++ .|....+.++++|+.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 335 ~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 6666666543 33 5555555556666666666654331 3455666677776665543
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.23 E-value=8.3e-10 Score=124.39 Aligned_cols=110 Identities=18% Similarity=0.285 Sum_probs=51.9
Q ss_pred cCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcC
Q 036375 659 SSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGF 738 (1009)
Q Consensus 659 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l 738 (1009)
..+|.+|..|+.+.+..+... +...+|.++++|+.+.+. +.++.....+|.+|.+|+.+++..+ ++ .|....+.++
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C 333 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGC 333 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTC
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCC
Confidence 344555555555555433222 334445555555555553 2333333344555555555555443 22 3444444445
Q ss_pred cCCcEEEccCCcccccCCcccCCCCCCCEEEccCC
Q 036375 739 VGLRILSLRSNAFSGEIPSKLSNLSSLQVLDLAEN 773 (1009)
Q Consensus 739 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 773 (1009)
.+|+.+.+..+ ++..-...|.+|++|+.+++.++
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 55555555433 33222344555555555555544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=4.2e-11 Score=132.75 Aligned_cols=83 Identities=23% Similarity=0.156 Sum_probs=44.0
Q ss_pred eEEEccC-CccCCCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCC
Q 036375 829 HFIDLSG-NNLHGDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSR 907 (1009)
Q Consensus 829 ~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 907 (1009)
+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|+++++|++|||++|+|++..|..+..++ |++|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 4444543 455444445555555555555555555555555555555555555555555554444444444 55555555
Q ss_pred Cccee
Q 036375 908 NQLSG 912 (1009)
Q Consensus 908 N~l~g 912 (1009)
|++..
T Consensus 113 N~~~c 117 (347)
T 2ifg_A 113 NPLHC 117 (347)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 55543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=2.2e-12 Score=143.16 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=83.6
Q ss_pred CCccEEEccCCcCCCcCCchhh----cCCCCccEEEccCCcccccCCcccc-cCCCCCeEEccCCcCCccCcCcc-----
Q 036375 593 VEIELLDLSNNHFSGPIPQNIS----GSMPNLIFLSVSGNRLTGKIPGSIG-EMQLLQVIDLSRNSISGSISSSI----- 662 (1009)
Q Consensus 593 ~~L~~L~Ls~n~l~~~ip~~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l----- 662 (1009)
..++.|++++|.++......+. ...++|++|+|++|.++......+. .+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 5677777777776532221111 1235677777777766543222222 34556666666666654333333
Q ss_pred cCCCCCCEEECCCCcCccc----CCccccCCCCCCEEEccCccccCC----CchhhcCCCCCCEEECcCCcccccCchhh
Q 036375 663 GNCTFLKVLDLSYSSLSGV----IPASLGQLTRLQSLHLNNNKLTGN----LPSSFQNLTSLETLDLGNNRFSGNIPSLL 734 (1009)
Q Consensus 663 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ip~~l 734 (1009)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.++.. ++..+..+++|++|+|++|.+++.....+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345666666666666542 223334556666666666665532 23444555566666666666653222111
Q ss_pred hh---cCcCCcEEEccCCcccc
Q 036375 735 GN---GFVGLRILSLRSNAFSG 753 (1009)
Q Consensus 735 ~~---~l~~L~~L~L~~N~l~~ 753 (1009)
.. ..++|+.|+|++|.+++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 11 24555555555555543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=1.2e-10 Score=128.94 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=92.6
Q ss_pred eEEEccCC-ccCCCCCccccCcCCCCeEEccC-CcccccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCC
Q 036375 829 HFIDLSGN-NLHGDFPTQLTKLVGLVVLNLSR-NHIGGQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLS 906 (1009)
Q Consensus 829 ~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls 906 (1009)
..++++++ ++++ +|. +..+++|+.|+|++ |+|++.+|..|+++++|+.|+|++|+|++.+|..|.++++|++|||+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45799998 8985 788 99999999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCcceecCCCCCCCCcccCCcCCCCCCCCCC
Q 036375 907 RNQLSGKIPFEGHMTTFDASSFAGNPGLCGD 937 (1009)
Q Consensus 907 ~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~ 937 (1009)
+|+|++..|.......+....+.+|+.-|.+
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 9999976654333233566677899988854
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.97 E-value=4.7e-08 Score=109.49 Aligned_cols=128 Identities=20% Similarity=0.218 Sum_probs=60.0
Q ss_pred cCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCE
Q 036375 615 GSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQS 694 (1009)
Q Consensus 615 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 694 (1009)
..+..|+.+.+..+ ++.+...+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +......+|.++++|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 33444454444332 23333344555555555555443 33334444555555555555432 33333344555555555
Q ss_pred EEccCccccCCCchhhcCCCCCCEEECcCCcccccCchhhhhcCcCCcEEEcc
Q 036375 695 LHLNNNKLTGNLPSSFQNLTSLETLDLGNNRFSGNIPSLLGNGFVGLRILSLR 747 (1009)
Q Consensus 695 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~l~~~l~~L~~L~L~ 747 (1009)
+.+.++.++..-..+|.+|++|+.++|..+ ++ .|+...+.++++|+.+.+.
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence 555555554444445555555555555433 22 3444444344555544443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.86 E-value=2.6e-07 Score=103.31 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=65.2
Q ss_pred hhhcCCCCccEEEccCCcccccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCC
Q 036375 612 NISGSMPNLIFLSVSGNRLTGKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTR 691 (1009)
Q Consensus 612 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 691 (1009)
..+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.+...+|.++.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 34444555555555543 44444555666666666666533 44344456666677777777666666555666667777
Q ss_pred CCEEEccCccccCCCchhhcCCCCCCEEECcCC
Q 036375 692 LQSLHLNNNKLTGNLPSSFQNLTSLETLDLGNN 724 (1009)
Q Consensus 692 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 724 (1009)
|+.+.|..+ ++..-..+|.+|++|+.+.+..+
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 777777543 44444556777777777766543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=5.3e-09 Score=114.79 Aligned_cols=55 Identities=18% Similarity=0.356 Sum_probs=34.3
Q ss_pred eEEEccCCccCCC----CCccccCcCCCCeEEccCCcccccCCCCccC-CCCCCEEeCCCCc
Q 036375 829 HFIDLSGNNLHGD----FPTQLTKLVGLVVLNLSRNHIGGQIPENISG-LHQLASLDLSSNN 885 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~ 885 (1009)
+.|||+.|.+++. ++..+..+++|+.|+|++|.++...-..+.. + ...+|+++|+
T Consensus 282 ~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 6677777777653 3334456677888888888776543333332 2 3567787776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=1.3e-08 Score=111.79 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=46.0
Q ss_pred CcCCCCeEEccCCccccc----CCCCccCCCCCCEEeCCCCcCCCCCcccccC-CCCCCeEeCCCCc
Q 036375 848 KLVGLVVLNLSRNHIGGQ----IPENISGLHQLASLDLSSNNLSGGIPSSLSS-LSFLGYINLSRNQ 909 (1009)
Q Consensus 848 ~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-l~~L~~L~ls~N~ 909 (1009)
.+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+.. + ...+++++|+
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 467899999999999874 4556677899999999999988654444443 2 3668999886
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=6.7e-08 Score=100.24 Aligned_cols=61 Identities=28% Similarity=0.390 Sum_probs=28.4
Q ss_pred eEEEccCCccCC--CCCccccCcCCCCeEEccCCcccccCCCCccCCC--CCCEEeCCCCcCCCCCc
Q 036375 829 HFIDLSGNNLHG--DFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLH--QLASLDLSSNNLSGGIP 891 (1009)
Q Consensus 829 ~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~ip 891 (1009)
+.|+||+|+|++ .+|..+..+++|+.|+|++|+|++. +.+..++ +|++|+|++|.+++.+|
T Consensus 173 ~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 173 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 444444444444 2334444555555555555555543 2222222 55555555555554443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=1.4e-07 Score=93.29 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=48.6
Q ss_pred eEEEccCCccCCC----CCccccCcCCCCeEEccCCccccc----CCCCccCCCCCCEEeC--CCCcCCCC----Ccccc
Q 036375 829 HFIDLSGNNLHGD----FPTQLTKLVGLVVLNLSRNHIGGQ----IPENISGLHQLASLDL--SSNNLSGG----IPSSL 894 (1009)
Q Consensus 829 ~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----ip~~l 894 (1009)
+.|||++|.++.. +...+...+.|++|+|++|.|+.. +.+.+...++|++|+| ++|.++.. +...+
T Consensus 68 ~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L 147 (185)
T 1io0_A 68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML 147 (185)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH
T ss_pred CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH
Confidence 4444444444332 223344445666777777766643 3455666667777777 66777643 33445
Q ss_pred cCCCCCCeEeCCCCcce
Q 036375 895 SSLSFLGYINLSRNQLS 911 (1009)
Q Consensus 895 ~~l~~L~~L~ls~N~l~ 911 (1009)
...+.|++|++++|++.
T Consensus 148 ~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 148 EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEeccCCCCC
Confidence 55577777777777663
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=2.2e-07 Score=91.87 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCCCccEEEccCC-ccccc----CCcccccCCCCCeEEccCCcCCcc----CcCcccCCCCCCEEECCCCcCc
Q 036375 616 SMPNLIFLSVSGN-RLTGK----IPGSIGEMQLLQVIDLSRNSISGS----ISSSIGNCTFLKVLDLSYSSLS 679 (1009)
Q Consensus 616 ~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 679 (1009)
..+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.|.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3455555555555 44422 122233344455555555554321 1222233344444444444444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=2.8e-07 Score=95.55 Aligned_cols=84 Identities=24% Similarity=0.245 Sum_probs=66.7
Q ss_pred EEccCCccC---CCCCccccCcCCCCeEEccCCcccc--cCCCCccCCCCCCEEeCCCCcCCCCCcccccCCC--CCCeE
Q 036375 831 IDLSGNNLH---GDFPTQLTKLVGLVVLNLSRNHIGG--QIPENISGLHQLASLDLSSNNLSGGIPSSLSSLS--FLGYI 903 (1009)
Q Consensus 831 L~Ls~N~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~L 903 (1009)
++++.|+.. +.++....++++|+.|+||+|+|++ .+|..+..+++|+.|||++|+|++. ..+..++ .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 567777432 2233333678899999999999998 5667788999999999999999976 3455555 99999
Q ss_pred eCCCCcceecCCC
Q 036375 904 NLSRNQLSGKIPF 916 (1009)
Q Consensus 904 ~ls~N~l~g~ip~ 916 (1009)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999998773
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=8.7e-06 Score=77.94 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=18.6
Q ss_pred CCcEEEccCCcCcccCCcccCCCCCCCEEEcCCCC
Q 036375 248 TLVYVDLSDCDLYGRIPIGFGELPNLQYLSLAGNN 282 (1009)
Q Consensus 248 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~L~~n~ 282 (1009)
+|++||+++|.++..--..+..+++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 45555555555544333344555555666555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.55 E-value=1.9e-05 Score=75.62 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=36.1
Q ss_pred CCeEEccCCcCCccCcCcccCCCCCCEEECCCCc-CcccCCccccCC----CCCCEEEccCcc-ccCCCchhhcCCCCCC
Q 036375 644 LQVIDLSRNSISGSISSSIGNCTFLKVLDLSYSS-LSGVIPASLGQL----TRLQSLHLNNNK-LTGNLPSSFQNLTSLE 717 (1009)
Q Consensus 644 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~L~ 717 (1009)
|+.||++++.++..--..+.+|++|+.|+|++|. +++..-..+..+ ++|++|+|++|. ++..--..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 3444444444333322334444445555554442 333222223322 245555555553 4432223345556666
Q ss_pred EEECcCCc
Q 036375 718 TLDLGNNR 725 (1009)
Q Consensus 718 ~L~L~~N~ 725 (1009)
.|++++++
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 66666554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.84 E-value=0.00044 Score=67.47 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=28.3
Q ss_pred CCCccEEEccCC-ccccc----CCcccccCCCCCeEEccCCcCCccCc----CcccCCCCCCEEECCCCcCc
Q 036375 617 MPNLIFLSVSGN-RLTGK----IPGSIGEMQLLQVIDLSRNSISGSIS----SSIGNCTFLKVLDLSYSSLS 679 (1009)
Q Consensus 617 l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~ 679 (1009)
-+.|++|+|++| ++... +..++..-+.|+.|+|++|++..... ..+..-+.|+.|+|++|.|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344555555553 44321 22233334455555555555543221 22223345555555555554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.76 E-value=0.0022 Score=58.40 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=33.9
Q ss_pred eEEccCCccc-ccCCCCccCCCCCCEEeCCCCcCCCCCcccccCCCCCCeEeCCCCcce
Q 036375 854 VLNLSRNHIG-GQIPENISGLHQLASLDLSSNNLSGGIPSSLSSLSFLGYINLSRNQLS 911 (1009)
Q Consensus 854 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 911 (1009)
.++.+++.++ ..+|..+. ++|+.|||++|+|+...+..|..+++|++|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 23443332 34667777777777666666667777777777777654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.76 E-value=0.00072 Score=65.94 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=29.7
Q ss_pred cCCCCCeEEccCC-cCCcc----CcCcccCCCCCCEEECCCCcCcccCCc----cccCCCCCCEEEccCcccc
Q 036375 640 EMQLLQVIDLSRN-SISGS----ISSSIGNCTFLKVLDLSYSSLSGVIPA----SLGQLTRLQSLHLNNNKLT 703 (1009)
Q Consensus 640 ~l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~ 703 (1009)
+-+.|++|+|++| ++... +...+..-+.|+.|+|++|.+...... .+..-+.|++|+|++|.|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3455666666654 54321 223344445555555555555433211 2223344445555444444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.40 E-value=0.0049 Score=56.11 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=49.3
Q ss_pred eEEEccCCccC-CCCCccccCcCCCCeEEccCCcccccCCCCccCCCCCCEEeCCCCcCC
Q 036375 829 HFIDLSGNNLH-GDFPTQLTKLVGLVVLNLSRNHIGGQIPENISGLHQLASLDLSSNNLS 887 (1009)
Q Consensus 829 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 887 (1009)
..+|.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 57899999997 46675543 36899999999999988899999999999999999886
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.13 E-value=31 Score=28.94 Aligned_cols=43 Identities=21% Similarity=0.204 Sum_probs=20.4
Q ss_pred ccCCcccccCCCCCeEEccCCcCCccCcCcccCCCCCCEEECCC
Q 036375 632 GKIPGSIGEMQLLQVIDLSRNSISGSISSSIGNCTFLKVLDLSY 675 (1009)
Q Consensus 632 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 675 (1009)
.+...+|.+|.+|+.+.+..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 333445555555555555432 3333344455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.24 E-value=49 Score=27.66 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=26.5
Q ss_pred CCccCcCcccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 036375 654 ISGSISSSIGNCTFLKVLDLSYSSLSGVIPASLGQLTRLQSLHLNN 699 (1009)
Q Consensus 654 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 699 (1009)
++.+...+|.+|++|+.+.+-.+ ++.+-..+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444556666667776666543 3434455666666666666654
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=32.67 E-value=32 Score=22.93 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=6.0
Q ss_pred hhhhHHHHHHHHHH
Q 036375 970 FSLGLGFAAGIIVP 983 (1009)
Q Consensus 970 ~~~~~~~~~~~~~~ 983 (1009)
.+++++.++|+.++
T Consensus 14 AGiVvG~v~gv~li 27 (38)
T 2k1k_A 14 VAVIFGLLLGAALL 27 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHH
Confidence 33444444444433
Done!