BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036376
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 1 KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
KA GEKEWYFF+ RDRKYP G R NR +GYWK TG DK I G VG+KK LVFY
Sbjct: 65 KALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI 124
Query: 61 GRAPKGEKSNWVMHEYRL--ENKHPFRSSKEEWVVCRVFQKSAAAVK 105
G+APKG K+NW+MHEYRL ++ + ++WV+CR+++K ++A K
Sbjct: 125 GKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 1 KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
KA GEKEWYFF+ RDRKYP G R NR +GYWK TG DK I G VG+KK LVFY
Sbjct: 68 KALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI 127
Query: 61 GRAPKGEKSNWVMHEYRL--ENKHPFRSSKEEWVVCRVFQKSAAAVK 105
G+APKG K+NW+MHEYRL ++ + ++WV+CR+++K ++A K
Sbjct: 128 GKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 174
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 68/106 (64%), Gaps = 7/106 (6%)
Query: 1 KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
+A G +EWYFF RDRKYP G R NRA GYWK TG DK + G +G+KK LVFY
Sbjct: 63 RALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYA 122
Query: 61 GRAPKGEKSNWVMHEYRLENKHPFRSSK-------EEWVVCRVFQK 99
G+AP+G K++W+MHEYRL + + ++WV+CR++ K
Sbjct: 123 GKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168
>pdb|1JSX|A Chain A, Crystal Structure Of The Escherichia Coli
Glucose-Inhibited Division Protein B (Gidb)
Length = 207
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 19/93 (20%)
Query: 72 VMHEYRLENKHPFRSSKEEW--------VVCRVFQKSAAAVKKPQHTPSSQ--------- 114
V HE +LEN P +S EE+ V+ R F V H P Q
Sbjct: 108 VQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQ 167
Query: 115 -PSDE-SLCDTNSMVNEFGDIELPNLNGIANLT 145
P DE +L V +++P L+G +L
Sbjct: 168 MPEDEIALLPEEYQVESVVKLQVPALDGERHLV 200
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 28.9 bits (63), Expect = 3.3, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 1 KASMGEKEWYFFNLRDRK----YPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTL 56
K S G F L+ ++ +PT L +A E T K E +AGV G + +
Sbjct: 84 KTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAE-----TIRKYAE--KAGV--GTENLI 134
Query: 57 VFYKGRAPKGEKSNWVMH 74
+Y GR PK EK N++ +
Sbjct: 135 GYYHGRIPKREKENFMQN 152
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 28.9 bits (63), Expect = 3.5, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 1 KASMGEKEWYFFNLRDRK----YPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTL 56
K S G F L+ ++ +PT L +A E T K E +AGV G + +
Sbjct: 84 KTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAE-----TIRKYAE--KAGV--GTENLI 134
Query: 57 VFYKGRAPKGEKSNWVMH 74
+Y GR PK EK N++ +
Sbjct: 135 GYYHGRIPKREKENFMQN 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,737,275
Number of Sequences: 62578
Number of extensions: 240919
Number of successful extensions: 324
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 6
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)