Query 036376
Match_columns 275
No_of_seqs 211 out of 820
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 20:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 9E-37 3.1E-41 264.7 10.6 101 2-102 64-171 (174)
2 1ut7_A No apical meristem prot 100.0 2.9E-36 9.9E-41 260.5 11.2 101 2-102 66-168 (171)
3 2k84_A P9; HOST-virus interact 16.5 43 0.0015 21.2 0.7 10 266-275 20-29 (30)
4 2oh5_A Polyhedrin, C-polyhedri 11.8 1.7E+02 0.0059 25.5 3.5 28 31-58 140-168 (248)
5 2rps_A Chemokine; peptide, imm 5.6 2E+02 0.0069 18.4 0.9 9 265-273 23-31 (32)
6 1ym0_B Fibrinotic enzyme compo 5.6 3E+02 0.01 16.8 1.6 13 125-137 14-26 (27)
7 3ktp_B Trinucleotide repeat-co 4.2 2.7E+02 0.0093 16.5 0.7 15 175-189 2-16 (22)
8 2xc8_A Gene 22 product; siphov 4.2 3.3E+02 0.011 22.1 1.5 16 86-101 68-83 (146)
9 3ebc_A Type-2 restriction enzy 3.5 2.4E+02 0.0084 25.8 0.1 10 174-183 199-208 (317)
10 2y9w_C Lectin-like fold protei 3.4 9.6E+02 0.033 19.4 3.6 44 26-76 14-58 (150)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=9e-37 Score=264.70 Aligned_cols=101 Identities=50% Similarity=1.048 Sum_probs=85.7
Q ss_pred CccCCceEEEeeecCCCCCCCCCccccCCCCeeEeecCceeEeeCCEEEEEEEEEEeeeccCCCCCccceEEEEEEeCCC
Q 036376 2 ASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENK 81 (275)
Q Consensus 2 A~~gekEWYFFSpR~rKy~~G~R~nRaTg~GyWKatGkdK~I~~~g~lVG~KKTLvFY~GraP~G~KT~WVMHEYrL~~~ 81 (275)
+.+|+++|||||+|++||++|.|++|+|++||||+||++++|..+|.+||+|||||||.|++|++.||+|+||||+|...
T Consensus 64 ~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~ 143 (174)
T 3ulx_A 64 ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADA 143 (174)
T ss_dssp CSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSC
T ss_pred hccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCC
Confidence 46789999999999999999999999999999999999999998899999999999999999999999999999999986
Q ss_pred CCCC-------CCCCCeEEEEEEEcCcc
Q 036376 82 HPFR-------SSKEEWVVCRVFQKSAA 102 (275)
Q Consensus 82 ~~~~-------~~~~ewVLCRVfkKs~~ 102 (275)
.... ...++|||||||+|+..
T Consensus 144 ~~~~~~~~~~~~~~~~wVlCrvf~K~~~ 171 (174)
T 3ulx_A 144 GRAAAGAKKGSLRLDDWVLCRLYNKKNE 171 (174)
T ss_dssp C-----------CCSSEEEEEEEESCC-
T ss_pred CCcccccccCCCCCCCEEEEEEEEcCCC
Confidence 4321 23689999999999865
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.9e-36 Score=260.48 Aligned_cols=101 Identities=55% Similarity=1.088 Sum_probs=82.3
Q ss_pred CccCCceEEEeeecCCCCCCCCCccccCCCCeeEeecCceeEeeCCEEEEEEEEEEeeeccCCCCCccceEEEEEEeCCC
Q 036376 2 ASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENK 81 (275)
Q Consensus 2 A~~gekEWYFFSpR~rKy~~G~R~nRaTg~GyWKatGkdK~I~~~g~lVG~KKTLvFY~GraP~G~KT~WVMHEYrL~~~ 81 (275)
++.++++|||||+|++||++|.|++|+|++||||+||++++|..++.+||+||+||||+|++|++.||+|+||||+|...
T Consensus 66 ~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~ 145 (171)
T 1ut7_A 66 ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEP 145 (171)
T ss_dssp SSSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCC
T ss_pred hhcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCC
Confidence 46789999999999999999999999999999999999999999899999999999999999999999999999999986
Q ss_pred CCC--CCCCCCeEEEEEEEcCcc
Q 036376 82 HPF--RSSKEEWVVCRVFQKSAA 102 (275)
Q Consensus 82 ~~~--~~~~~ewVLCRVfkKs~~ 102 (275)
... ....++|||||||+|+..
T Consensus 146 ~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 146 SRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp C--------CCEEEEEEEECC--
T ss_pred ccccCcccCCCEEEEEEEEcCCC
Confidence 532 134689999999999875
No 3
>2k84_A P9; HOST-virus interaction, metal-binding, virion, zinc, zinc-finger; NMR {Synthetic}
Probab=16.50 E-value=43 Score=21.25 Aligned_cols=10 Identities=50% Similarity=1.092 Sum_probs=8.5
Q ss_pred cCCCCCCCCC
Q 036376 266 EQPFNLDSIW 275 (275)
Q Consensus 266 ~~~~~~~~~~ 275 (275)
++-.||||+|
T Consensus 20 ~eDLNL~SLW 29 (30)
T 2k84_A 20 VEDLNLDSLW 29 (30)
T ss_dssp TGGGTTTSSC
T ss_pred hhccchhhcc
Confidence 4678999999
No 4
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=11.79 E-value=1.7e+02 Score=25.54 Aligned_cols=28 Identities=32% Similarity=0.587 Sum_probs=22.0
Q ss_pred CCeeEeec-CceeEeeCCEEEEEEEEEEe
Q 036376 31 AGYWKTTG-KDKEIFRAGVLVGMKKTLVF 58 (275)
Q Consensus 31 ~GyWKatG-kdK~I~~~g~lVG~KKTLvF 58 (275)
.--|.+|| +-+.|..+|.+||.--.|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 34699999 46778889999998776653
No 5
>2rps_A Chemokine; peptide, immune system; NMR {Pseudaletia separata}
Probab=5.61 E-value=2e+02 Score=18.40 Aligned_cols=9 Identities=56% Similarity=0.918 Sum_probs=7.6
Q ss_pred ccCCCCCCC
Q 036376 265 QEQPFNLDS 273 (275)
Q Consensus 265 ~~~~~~~~~ 273 (275)
-|.||+.|+
T Consensus 23 TEpPFd~ds 31 (32)
T 2rps_A 23 TEPPFDPDS 31 (32)
T ss_dssp CCCCCCCCC
T ss_pred cCCCCCcCc
Confidence 399999887
No 6
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=5.56 E-value=3e+02 Score=16.77 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=9.5
Q ss_pred CccccCCCCCCCC
Q 036376 125 SMVNEFGDIELPN 137 (275)
Q Consensus 125 ~~~~d~~~~~lp~ 137 (275)
+.++|.+|.+|||
T Consensus 14 sqysdagdmelpp 26 (27)
T 1ym0_B 14 SQYSDAGDMELPP 26 (27)
T ss_dssp CSSTTTTCCCCCC
T ss_pred eecccccccccCC
Confidence 4456778888886
No 7
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=4.21 E-value=2.7e+02 Score=16.48 Aligned_cols=15 Identities=27% Similarity=0.873 Sum_probs=9.4
Q ss_pred ccccchhhhcCCCCC
Q 036376 175 LNMNWAAASLPSLTW 189 (275)
Q Consensus 175 ~~~~~~~~~~~~~~~ 189 (275)
.+.||+.+-.|-.||
T Consensus 2 s~~sWpPef~pg~pw 16 (22)
T 3ktp_B 2 SSINWPPEFHPGVPW 16 (26)
T ss_pred CcccCCcccccCCcc
Confidence 355677666666666
No 8
>2xc8_A Gene 22 product; siphoviridae, GRAM-positive phage, viral protein; 2.35A {Bacillus phage SPP1}
Probab=4.16 E-value=3.3e+02 Score=22.06 Aligned_cols=16 Identities=19% Similarity=0.767 Sum_probs=11.9
Q ss_pred CCCCCeEEEEEEEcCc
Q 036376 86 SSKEEWVVCRVFQKSA 101 (275)
Q Consensus 86 ~~~~ewVLCRVfkKs~ 101 (275)
..+-.|.|||.|....
T Consensus 68 tkkvswslckayldge 83 (146)
T 2xc8_A 68 TKKVSWSLCKAYLDGE 83 (146)
T ss_dssp TCCEEEEEEEEETTTT
T ss_pred eeeeeHHHHHHhcCCc
Confidence 4567899999987543
No 9
>3ebc_A Type-2 restriction enzyme hincii; intermediate, mutant, dimerization, R-loop, endonuclease, hydrolase; 2.55A {Haemophilus influenzae}
Probab=3.45 E-value=2.4e+02 Score=25.75 Aligned_cols=10 Identities=60% Similarity=0.993 Sum_probs=9.2
Q ss_pred cccccchhhh
Q 036376 174 NLNMNWAAAS 183 (275)
Q Consensus 174 ~~~~~~~~~~ 183 (275)
+||+||+||-
T Consensus 199 ~LYINWAAAM 208 (317)
T 3ebc_A 199 ELYINWAAAM 208 (317)
T ss_dssp GCEEETTBTT
T ss_pred HHhhhHHHhh
Confidence 7999999997
No 10
>2y9w_C Lectin-like fold protein, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_E
Probab=3.43 E-value=9.6e+02 Score=19.36 Aligned_cols=44 Identities=20% Similarity=0.651 Sum_probs=24.5
Q ss_pred cccCCCCeeEeecCceeEee-CCEEEEEEEEEEeeeccCCCCCccceEEEEE
Q 036376 26 NRATEAGYWKTTGKDKEIFR-AGVLVGMKKTLVFYKGRAPKGEKSNWVMHEY 76 (275)
Q Consensus 26 nRaTg~GyWKatGkdK~I~~-~g~lVG~KKTLvFY~GraP~G~KT~WVMHEY 76 (275)
-|.-.+-.|-.......... .| ||..+....|......|++|.|
T Consensus 14 trilnganwannsatenlatnsg-------tliifdqstpgqdadrwlihny 58 (150)
T 2y9w_C 14 TRILNGANWANNSATENLATNSG-------TLIIFDQSTPGQDADRWLIHNY 58 (150)
T ss_dssp BEEEETTEEEEECCC------CC-------EEEEEESCCCSTTTTCEEEEEE
T ss_pred ceeeccccccccchhhhhhcCCc-------eEEEEcCCCCCCcchhhhhhhc
Confidence 34445567877666555543 23 3444444556556789999998
Done!