Your job contains 1 sequence.
>036378
METDSDSGGSHISATPPRCQNPPSPPPLQTNTLSSSKSKVRIRRSFSQNPSISAFKSLET
LPAGFCFRLASFTKIQKPSLRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVP
LPPAKLRKCNGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSYRRTASELELVEEAVRAV
RDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL
PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPER
FLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTA
TATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS
KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV
AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYS
DGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYL
QLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTID
VSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMF
HAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFL
QSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036378
(815 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2029799 - symbol:AT1G27880 species:3702 "Arabi... 2091 9.4e-233 3
UNIPROTKB|A5D786 - symbol:RECQL4 "RECQL4 protein" species... 564 4.9e-69 4
UNIPROTKB|O94761 - symbol:RECQL4 "ATP-dependent DNA helic... 558 6.7e-68 4
UNIPROTKB|F1RSP7 - symbol:RECQL4 "Uncharacterized protein... 553 9.7e-67 4
UNIPROTKB|K7GSZ9 - symbol:RECQL4 "Uncharacterized protein... 553 1.0e-66 4
UNIPROTKB|F1RV44 - symbol:RECQL4 "Uncharacterized protein... 553 1.2e-66 4
UNIPROTKB|Q47WD5 - symbol:CPS_4237 "RecQ domain protein" ... 605 5.4e-61 2
TIGR_CMR|CPS_4237 - symbol:CPS_4237 "RecQ domain protein"... 605 5.4e-61 2
UNIPROTKB|Q33DM4 - symbol:recql4 "RecQ4 protein" species:... 320 2.1e-59 5
UNIPROTKB|Q8EEK1 - symbol:SO_2380 "ATP-dependent DNA heli... 574 1.4e-58 2
TIGR_CMR|SO_2380 - symbol:SO_2380 "RecQ domain protein" s... 574 1.4e-58 2
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli... 563 4.8e-58 2
UNIPROTKB|Q4JNX8 - symbol:RTS "RECQL4-helicase-like prote... 306 8.6e-58 5
UNIPROTKB|O34748 - symbol:recQ "Probable ATP-dependent DN... 554 3.8e-56 2
FB|FBgn0040290 - symbol:RecQ4 "RecQ4" species:7227 "Droso... 303 8.8e-55 4
TIGR_CMR|SO_4241 - symbol:SO_4241 "ATP-dependent DNA heli... 561 2.6e-54 1
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli... 547 8.0e-53 1
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli... 547 8.0e-53 1
TIGR_CMR|SPO_0107 - symbol:SPO_0107 "ATP-dependent DNA he... 517 1.7e-49 1
MGI|MGI:1931028 - symbol:Recql4 "RecQ protein-like 4" spe... 443 7.1e-49 4
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia... 497 3.6e-47 1
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth... 521 4.5e-47 1
RGD|1307732 - symbol:Recql4 "RecQ protein-like 4" species... 431 9.5e-47 5
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he... 482 1.8e-45 1
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he... 478 5.0e-45 1
TAIR|locus:2074429 - symbol:RECQI1 "RECQ helicase l1" spe... 459 1.4e-44 2
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein... 472 2.3e-44 1
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica... 471 3.0e-44 1
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica... 471 3.0e-44 1
CGD|CAL0004296 - symbol:SGS1 species:5476 "Candida albica... 498 6.2e-44 3
UNIPROTKB|Q5A5R4 - symbol:SGS1 "Putative uncharacterized ... 498 6.2e-44 3
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd... 488 1.2e-43 1
DICTYBASE|DDB_G0292130 - symbol:blm "Bloom syndrome prote... 497 1.5e-43 2
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic... 464 1.8e-43 1
TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37... 480 1.8e-43 1
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein... 456 1.4e-42 1
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"... 465 2.5e-42 1
DICTYBASE|DDB_G0272384 - symbol:DDB_G0272384 "Bloom syndr... 479 3.9e-42 2
ZFIN|ZDB-GENE-070702-5 - symbol:blm "Bloom syndrome" spec... 475 7.4e-42 2
UNIPROTKB|P46063 - symbol:RECQL "ATP-dependent DNA helica... 461 9.3e-42 1
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species... 471 1.0e-41 1
UNIPROTKB|Q9DEY9 - symbol:blm "Bloom syndrome protein hom... 473 1.3e-41 1
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"... 459 1.5e-41 1
MGI|MGI:103021 - symbol:Recql "RecQ protein-like" species... 459 1.6e-41 1
UNIPROTKB|F1ND40 - symbol:BLM "Bloom syndrome protein hom... 470 1.9e-41 1
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase... 466 1.9e-41 2
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric... 472 2.1e-41 1
UNIPROTKB|F1SR01 - symbol:RECQL "Uncharacterized protein"... 458 2.3e-41 1
UNIPROTKB|F1P3V1 - symbol:BLM "Bloom syndrome protein hom... 470 2.9e-41 1
UNIPROTKB|F1NPI7 - symbol:RECQL "Uncharacterized protein"... 458 3.3e-41 1
TAIR|locus:2197394 - symbol:RECQ4A species:3702 "Arabidop... 468 3.6e-41 1
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe... 459 5.2e-41 1
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic... 464 6.5e-41 1
SGD|S000004802 - symbol:SGS1 "Nucleolar DNA helicase of t... 477 6.5e-41 2
UNIPROTKB|Q9I920 - symbol:BLM "Bloom syndrome protein hom... 464 9.2e-41 1
TIGR_CMR|BA_1505 - symbol:BA_1505 "ATP-dependent DNA heli... 438 1.3e-40 1
UNIPROTKB|E1BQ04 - symbol:BLM "Uncharacterized protein" s... 470 1.9e-40 2
UNIPROTKB|E2RS76 - symbol:BLM "Uncharacterized protein" s... 461 3.0e-40 1
UNIPROTKB|J9PB86 - symbol:BLM "Uncharacterized protein" s... 461 3.1e-40 1
RGD|1308810 - symbol:Blm "Bloom syndrome, RecQ helicase-l... 456 5.2e-40 1
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein... 456 5.5e-40 1
MGI|MGI:1328362 - symbol:Blm "Bloom syndrome, RecQ helica... 458 6.6e-40 1
ZFIN|ZDB-GENE-050809-134 - symbol:recql "RecQ protein-lik... 445 8.1e-40 1
UNIPROTKB|H0YNU5 - symbol:BLM "Bloom syndrome protein" sp... 456 9.2e-40 1
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein... 460 9.9e-40 2
UNIPROTKB|P54132 - symbol:BLM "Bloom syndrome protein" sp... 456 1.1e-39 1
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh... 443 1.1e-39 1
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein... 453 6.4e-39 2
UNIPROTKB|F1RX70 - symbol:WRN "Uncharacterized protein" s... 449 6.5e-39 1
UNIPROTKB|I3LC91 - symbol:WRN "Uncharacterized protein" s... 449 7.3e-39 1
UNIPROTKB|F1NAR0 - symbol:F1NAR0 "Uncharacterized protein... 448 8.0e-39 1
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot... 454 9.6e-39 2
TAIR|locus:2180255 - symbol:RECQSIM "RECQ helicase SIM" s... 253 2.0e-38 2
UNIPROTKB|F1PZR3 - symbol:WRN "Uncharacterized protein" s... 444 2.6e-38 1
UNIPROTKB|F1PUF8 - symbol:WRN "Uncharacterized protein" s... 444 2.8e-38 1
MGI|MGI:109635 - symbol:Wrn "Werner syndrome homolog (hum... 450 6.3e-38 2
UNIPROTKB|Q14191 - symbol:WRN "Werner syndrome ATP-depend... 440 6.6e-38 1
WB|WBGene00006944 - symbol:wrn-1 species:6239 "Caenorhabd... 437 7.9e-38 1
UNIPROTKB|F1PZR2 - symbol:WRN "Uncharacterized protein" s... 437 1.3e-37 1
WB|WBGene00004322 - symbol:rcq-5 species:6239 "Caenorhabd... 427 4.9e-37 1
UNIPROTKB|H9KZS5 - symbol:H9KZS5 "Uncharacterized protein... 273 8.3e-37 3
UNIPROTKB|E1BEE6 - symbol:WRN "Uncharacterized protein" s... 437 1.5e-36 2
GENEDB_PFALCIPARUM|PF14_0278 - symbol:PF14_0278 "ATP-depe... 430 1.0e-35 2
UNIPROTKB|Q8ILG5 - symbol:PF14_0278 "ATP-dependent DNA he... 430 1.0e-35 2
RGD|1564788 - symbol:Wrn "Werner syndrome, RecQ helicase-... 418 1.8e-35 1
UNIPROTKB|O93530 - symbol:wrn "Werner syndrome ATP-depend... 428 2.8e-35 2
UNIPROTKB|E2RDN3 - symbol:E2RDN3 "Uncharacterized protein... 321 1.7e-33 4
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe... 270 8.5e-31 3
FB|FBgn0027375 - symbol:RecQ5 "homolog of RecQ" species:7... 236 1.4e-29 3
UNIPROTKB|Q6P4G0 - symbol:RECQL5 "ATP-dependent DNA helic... 351 4.6e-29 2
ASPGD|ASPL0000072255 - symbol:recQ species:162425 "Emeric... 214 1.1e-26 2
UNIPROTKB|F1RMJ3 - symbol:BLM "Uncharacterized protein" s... 263 2.2e-19 1
UNIPROTKB|F8WD97 - symbol:RECQL "ATP-dependent DNA helica... 208 9.4e-16 1
UNIPROTKB|F8WA66 - symbol:RECQL "ATP-dependent DNA helica... 206 1.5e-15 1
ASPGD|ASPL0000073665 - symbol:AN5092 species:162425 "Emer... 156 1.5e-14 2
UNIPROTKB|Q47ZX4 - symbol:CPS_2945 "Putative DEAD/DEAH bo... 230 4.4e-14 2
TIGR_CMR|CPS_2945 - symbol:CPS_2945 "putative DEAD/DEAH b... 230 4.4e-14 2
POMBASE|SPBCPT2R1.08c - symbol:tlh2 "RecQ type DNA helica... 220 7.8e-14 1
POMBASE|SPAC212.11 - symbol:tlh1 "RecQ type DNA helicase"... 220 8.7e-14 1
UNIPROTKB|F1RMJ2 - symbol:BLM "Uncharacterized protein" s... 211 1.0e-13 1
WARNING: Descriptions of 337 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2029799 [details] [associations]
symbol:AT1G27880 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0042631 "cellular response
to water deprivation" evidence=IEP] [GO:0006260 "DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 EMBL:AC079280 GO:GO:0006310
GO:GO:0042631 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043
HOGENOM:HOG000264957 KO:K10730 EMBL:AJ421618 EMBL:AK226619
IPI:IPI00519923 RefSeq:NP_174109.2 UniGene:At.40984
ProteinModelPortal:Q0WVW7 SMR:Q0WVW7 PaxDb:Q0WVW7 PRIDE:Q0WVW7
EnsemblPlants:AT1G27880.1 GeneID:839681 KEGG:ath:AT1G27880
KEGG:dosa:Os04t0486800-01 TAIR:At1g27880 InParanoid:Q0WVW7
OMA:THFWGRY PhylomeDB:Q0WVW7 ProtClustDB:CLSN2680265
Genevestigator:Q0WVW7 Uniprot:Q0WVW7
Length = 911
Score = 2091 (741.1 bits), Expect = 9.4e-233, Sum P(3) = 9.4e-233
Identities = 409/631 (64%), Positives = 488/631 (77%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
DENL +LL LVYGYDSFRDGQL+AIKM+L STMLVLPTGAGKSLCYQIPAMILPG+TL
Sbjct: 254 DENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITL 313
Query: 246 VVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
VV PLV+LMIDQL+HLP +I GG LSSSQRPEE ET+R ++ G IKVLFVSPER LN +
Sbjct: 314 VVSPLVSLMIDQLKHLPSIIKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPERLLNVE 373
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXX 365
FLS+F + +SLVVVDEAHCVSEWSHNFRPSYM ECILAM
Sbjct: 374 FLSMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTM 433
Query: 366 XLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV-FSFHRSSKHYY 424
L+ VMS+LEIP +NLIQK+QLRDN +LSVSLSG NR + ++ + RS Y
Sbjct: 434 TLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIRSIIVYC 493
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
Q +ETD+IS+YL DN+I+ K YHSG+PAKDR RIQE FCSNKIRVVVATVAFGM
Sbjct: 494 KFQ-----YETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGM 548
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD 544
GLDK DVGAVIH+S+P S+EEYVQEIGRAGRDGRLSYCHLF D+ TY +LRSL +SDGVD
Sbjct: 549 GLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSLAHSDGVD 608
Query: 545 EYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLP 604
EYA+ KFL VF+ H K+CSLV ESAS+KFD+KEEVM T+LT LELGE+QYL++LP
Sbjct: 609 EYAVGKFLTHVFSTETKQHEKICSLVIESASQKFDMKEEVMQTILTHLELGEVQYLRMLP 668
Query: 605 ELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
+L + CTLNFHK++P LA + +VA ILKKS KQG +VFDIP VA+SI T DV +
Sbjct: 669 QLNICCTLNFHKSSPNTLAARSAIVAAILKKSHVKQGLHVFDIPAVASSICVATTDVLAE 728
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
+ LKM+GE+TYELKD A+CYTI++ P + C+LS+HLTKWL+E+E+CKVRKLD M AAV
Sbjct: 729 IQALKMKGEVTYELKDSAFCYTILKSPKEICSLSSHLTKWLTEIESCKVRKLDIMSSAAV 788
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNL 784
A+ V + +G+ T LQ I DYF GD+ CD P+K Q+ FLRADIKVFLQSN
Sbjct: 789 AAISVSNTSELSSGAKQTRSLQSRIFDYFNGDEKCDSPSKATQNCAFLRADIKVFLQSNR 848
Query: 785 NAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
AKFTPRA+ARI+HG+ SPA+P+++WSKTHF
Sbjct: 849 QAKFTPRAIARIMHGVGSPAFPNSVWSKTHF 879
Score = 117 (46.2 bits), Expect = 9.4e-233, Sum P(3) = 9.4e-233
Identities = 37/104 (35%), Positives = 56/104 (53%)
Query: 66 CFRLASFTKIQKPSLRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAK 125
C R ASFT ++K L+ + +P P P + E+ + + ++K NL++ + PP K
Sbjct: 107 CSR-ASFTSVEK--LKSDGVDFVPEP--P--LVEVIAPPKSVRRKPPNLITDTITSPPVK 159
Query: 126 ---LRKC-NGEGNFVRLNLNNNK-RKFANKGKRNKSFRGKLSYR 164
R NGEGNFV+LNLN + +KF +K K R S+R
Sbjct: 160 PMVFRSNGNGEGNFVKLNLNGKRGKKFPSKYKGVSKSRSSYSFR 203
Score = 77 (32.2 bits), Expect = 9.4e-233, Sum P(3) = 9.4e-233
Identities = 14/18 (77%), Positives = 16/18 (88%)
Query: 1 METDSDSGGSHISATPPR 18
M+ DSDS GSH+SATPPR
Sbjct: 1 MDFDSDSDGSHVSATPPR 18
>UNIPROTKB|A5D786 [details] [associations]
symbol:RECQL4 "RECQL4 protein" species:9913 "Bos taurus"
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008284 GO:GO:0003676 GO:GO:0006310
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 eggNOG:COG0514 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0045875 CTD:9401
HOGENOM:HOG000264957 HOVERGEN:HBG065925 KO:K10730
InterPro:IPR021110 Pfam:PF11719 OrthoDB:EOG4CJVGG EMBL:DAAA02037439
EMBL:BC140466 IPI:IPI00852560 RefSeq:NP_001091506.1
UniGene:Bt.27882 STRING:A5D786 Ensembl:ENSBTAT00000056581
GeneID:515472 KEGG:bta:515472 OMA:DMPEEAI NextBio:20871839
Uniprot:A5D786
Length = 1218
Score = 564 (203.6 bits), Expect = 4.9e-69, Sum P(4) = 4.9e-69
Identities = 135/378 (35%), Positives = 205/378 (54%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +F GQ + VL ST+LVLPTGAGKSLCYQ+PA++ P LTLV+ PL +L
Sbjct: 491 GHHAFYPGQERVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYFRRSPCLTLVISPLTSL 550
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQL LPP + G + S ++ ++ + ++VL +SPE + A ++ +
Sbjct: 551 MDDQLSGLPPGLKGACIHSGMTKKQRDSALQKARAARVQVLMLSPEALVGAGASTLLSQL 610
Query: 314 SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVMSA 373
++ +DEAHC+S+WSHNFRP Y+ V C L + DV
Sbjct: 611 PPVAFACLDEAHCLSQWSHNFRPCYLRVCQTLRDQM-GVHCFLGLTATATRSTALDVAWH 669
Query: 374 LEIPLSNLIQ-KAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKH 432
L + ++++ A + DNL LSVS + Q + + F S Y +
Sbjct: 670 LGVTEESVLRGPATIPDNLHLSVSSDRDPDQALVTLLRSDRFRA-LGSVIIYCHRREDTE 728
Query: 433 FETDLISRYLCD--------NSISV--KSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
L+ LCD ++ ++YH+G+ +++R R+Q F ++R+VVATVAF
Sbjct: 729 RVAALLRTCLCDAQDPGPHGRALEAVAEAYHAGLCSRERRRVQRAFMEGRLRMVVATVAF 788
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFRLRSLM 538
GMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL D+ LR +
Sbjct: 789 GMGLDRPDVRAVLHLGLPPSFETYVQAVGRAGRDGQPAHCHLFLRPQGQDLR--ELRRHV 846
Query: 539 YSDGVDEYAINKFLCQVF 556
+++ VD +A+ + + +VF
Sbjct: 847 HANAVDFFAVKRLVQRVF 864
Score = 97 (39.2 bits), Expect = 4.9e-69, Sum P(4) = 4.9e-69
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 772 LRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
+R DI+ L S +F+ RAVAR+ HGI SP YP+ ++ +
Sbjct: 1149 IRRDIRQLLSSWPEQRFSGRAVARVFHGIGSPCYPAQVFGR 1189
Score = 70 (29.7 bits), Expect = 4.9e-69, Sum P(4) = 4.9e-69
Identities = 31/97 (31%), Positives = 45/97 (46%)
Query: 579 DIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH--KTTPTLLADKDKMVATILKKS 636
D+ EE + TLL LEL ++L+LL C L + T LA + +A L +
Sbjct: 926 DMPEEAIETLLCYLELHPRRWLKLLAPTYARCHLRWPGGPTQLQALARRCPPLALCLAQQ 985
Query: 637 --ETKQG--QYVFDIPTVANSIGATTIDVSNQLLNLK 669
+TKQG D+ +A+S G V LL L+
Sbjct: 986 HPDTKQGCSSVELDLVELADSTGWELGPVRRALLQLQ 1022
Score = 51 (23.0 bits), Expect = 4.9e-69, Sum P(4) = 4.9e-69
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 123 PAKLRKCNGEGNFVRLNLNNNKRKFANKGKRNKSFRGKL 161
PA GN+VRLN+ +R++ R ++ RG+L
Sbjct: 318 PASRSAIQDRGNYVRLNMK--QRRYV----RGRALRGRL 350
>UNIPROTKB|O94761 [details] [associations]
symbol:RECQL4 "ATP-dependent DNA helicase Q4" species:9606
"Homo sapiens" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032508
"DNA duplex unwinding" evidence=IDA] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IMP] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0006260
"DNA replication" evidence=IDA] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0007275 "multicellular organismal development"
evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000405
EMBL:AB006532 EMBL:AB026546 EMBL:DQ176868 EMBL:BC011602
EMBL:BC013277 IPI:IPI00014925 RefSeq:NP_004251.3 UniGene:Hs.31442
PDB:2KMU PDBsum:2KMU ProteinModelPortal:O94761 SMR:O94761
DIP:DIP-48475N IntAct:O94761 MINT:MINT-1432307 STRING:O94761
PhosphoSite:O94761 PaxDb:O94761 PRIDE:O94761 GeneID:9401
KEGG:hsa:9401 UCSC:uc003zdj.3 CTD:9401 GeneCards:GC08M145738
HGNC:HGNC:9949 MIM:218600 MIM:266280 MIM:268400 MIM:603780
neXtProt:NX_O94761 Orphanet:1225 Orphanet:3021 Orphanet:221016
PharmGKB:PA34316 HOGENOM:HOG000264957 HOVERGEN:HBG065925
InParanoid:O94761 KO:K10730 EvolutionaryTrace:O94761
GenomeRNAi:9401 NextBio:35219 CleanEx:HS_RECQL4
Genevestigator:O94761 GermOnline:ENSG00000160957 InterPro:IPR021110
Pfam:PF11719 Uniprot:O94761
Length = 1208
Score = 558 (201.5 bits), Expect = 6.7e-68, Sum P(4) = 6.7e-68
Identities = 136/381 (35%), Positives = 206/381 (54%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 477 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSL 536
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQ+ LPP + + S ++ ++ I+ + VL ++PE + A L
Sbjct: 537 MDDQVSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALVGAGGLPPAAQL 596
Query: 314 SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVMSA 373
++ +DEAHC+S+WSHNFRP Y+ V C L + DV
Sbjct: 597 PPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERM-GVHCFLGLTATATRRTASDVAQH 655
Query: 374 LEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF-HRSSKHYY 424
L + +L A + NL LSVS+ + Q +R +D + + +R
Sbjct: 656 LAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRREDTER 715
Query: 425 ILQISGKHFETDLISRYLCDNS-----ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
I + T L + ++ + + ++YH+G+ +++R R+Q F ++RVVVAT
Sbjct: 716 IAAL----LRTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVVAT 771
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFRLR 535
VAFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL +D+ LR
Sbjct: 772 VAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQGEDLR--ELR 829
Query: 536 SLMYSDGVDEYAINKFLCQVF 556
+++D D A+ + + +VF
Sbjct: 830 RHVHADSTDFLAVKRLVQRVF 850
Score = 106 (42.4 bits), Expect = 6.7e-68, Sum P(4) = 6.7e-68
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 772 LRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
+R DI+ FL KF+ RAVARI HGI SP YP+ ++ +
Sbjct: 1139 VRCDIRQFLSLRPEEKFSSRAVARIFHGIGSPCYPAQVYGQ 1179
Score = 61 (26.5 bits), Expect = 6.7e-68, Sum P(4) = 6.7e-68
Identities = 29/98 (29%), Positives = 42/98 (42%)
Query: 579 DIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTL--LADKDKMVATILKKS 636
D+ EE + TLL LEL +L+LL C LN L LA + +A L +
Sbjct: 914 DMPEEAIETLLCYLELHPHHWLELLATTYTHCRLNCPGGPAQLQALAHRCPPLAVCLAQQ 973
Query: 637 ---ETKQGQ--YVFDIPTVANSIGATTIDVSNQLLNLK 669
+ QG FD+ + +S+G V L L+
Sbjct: 974 LPEDPGQGSSSVEFDMVKLVDSMGWELASVRRALCQLQ 1011
Score = 46 (21.3 bits), Expect = 6.7e-68, Sum P(4) = 6.7e-68
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 86 QSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAKLRKCNGEGNFVRLNLNNNKR 145
Q +PSNP+ + + + A+ K + + P +L + + GN+VRLN+ K+
Sbjct: 309 QPCSSPSNPR-YHGLSPSSQARAGKAEGTAPLHI-FP--RLAR-HDRGNYVRLNM---KQ 360
Query: 146 KFANKGKRNKS 156
K +G+ +S
Sbjct: 361 KHYVRGRALRS 371
>UNIPROTKB|F1RSP7 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
EMBL:CU468594 Ensembl:ENSSSCT00000006477 Uniprot:F1RSP7
Length = 1204
Score = 553 (199.7 bits), Expect = 9.7e-67, Sum P(4) = 9.7e-67
Identities = 131/379 (34%), Positives = 202/379 (53%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +F GQ + +L ST+LVLPTG GKSLCYQ+PA++ P LTLV+ PL++L
Sbjct: 484 GHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISPLMSL 543
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQ+ LPP + + S ++ ++ + ++VL +SPE A + T
Sbjct: 544 MDDQVSGLPPGLKAACIHSGMSKKQRNSALQKARSAQVQVLMLSPEALAGAGAAGLAFLT 603
Query: 314 SL--ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVM 371
L ++ +DEAHC+S+WSHNFRP Y+ V C L + DV
Sbjct: 604 QLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERV-GVSCFLGLTATATRSTALDVA 662
Query: 372 SALEIPLSNLIQ-KAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF--HRSSK 421
L + ++++ + + NL LSVS+ + Q ++R +D + + R
Sbjct: 663 QHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALVTLLQSDRFCALDSIIIYCNRREDT 722
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
+ ET + ++YH+G+ +++R R+Q F ++RVVVATVA
Sbjct: 723 ERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCSRERWRVQRAFMEGRLRVVVATVA 782
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFRLRSL 537
FGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL +D+ + LR
Sbjct: 783 FGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLRPQAEDL--WELRRH 840
Query: 538 MYSDGVDEYAINKFLCQVF 556
+++D +D A+ K + VF
Sbjct: 841 VHADAIDFLAVKKLVQHVF 859
Score = 95 (38.5 bits), Expect = 9.7e-67, Sum P(4) = 9.7e-67
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 772 LRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
+R DI+ L S +F+ RAVAR+ HGI SP YP+ ++ +
Sbjct: 1135 IRRDIRHLLSSWPEQQFSGRAVARVFHGIGSPRYPAQVYGR 1175
Score = 71 (30.1 bits), Expect = 9.7e-67, Sum P(4) = 9.7e-67
Identities = 27/94 (28%), Positives = 42/94 (44%)
Query: 579 DIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH--KTTPTLLADK-DKMVATILKK 635
D+ EE + TLL LEL ++L+LL C L T LA + + A + ++
Sbjct: 916 DVPEEAIETLLCYLELHPQRWLKLLEPTYARCHLRCPGGPTQLQALARRCPPLAACLAQQ 975
Query: 636 SETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK 669
S FD+ +A+S+G V L L+
Sbjct: 976 SPENTASVEFDVVELADSMGWELAPVRRALRQLQ 1009
Score = 41 (19.5 bits), Expect = 9.7e-67, Sum P(4) = 9.7e-67
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 133 GNFVRLNLNNNKRKFANKGKRNKSFR 158
GN+VRLN+ KR R++ R
Sbjct: 357 GNYVRLNMKQ-KRYVRGLAPRSRLLR 381
>UNIPROTKB|K7GSZ9 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
InterPro:IPR021110 Pfam:PF11719 EMBL:CU468594
Ensembl:ENSSSCT00000036186 Uniprot:K7GSZ9
Length = 1209
Score = 553 (199.7 bits), Expect = 1.0e-66, Sum P(4) = 1.0e-66
Identities = 131/379 (34%), Positives = 202/379 (53%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +F GQ + +L ST+LVLPTG GKSLCYQ+PA++ P LTLV+ PL++L
Sbjct: 489 GHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISPLMSL 548
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQ+ LPP + + S ++ ++ + ++VL +SPE A + T
Sbjct: 549 MDDQVSGLPPGLKAACIHSGMSKKQRNSALQKARSAQVQVLMLSPEALAGAGAAGLAFLT 608
Query: 314 SL--ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVM 371
L ++ +DEAHC+S+WSHNFRP Y+ V C L + DV
Sbjct: 609 QLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERV-GVSCFLGLTATATRSTALDVA 667
Query: 372 SALEIPLSNLIQ-KAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF--HRSSK 421
L + ++++ + + NL LSVS+ + Q ++R +D + + R
Sbjct: 668 QHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALVTLLQSDRFCALDSIIIYCNRREDT 727
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
+ ET + ++YH+G+ +++R R+Q F ++RVVVATVA
Sbjct: 728 ERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCSRERWRVQRAFMEGRLRVVVATVA 787
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFRLRSL 537
FGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL +D+ + LR
Sbjct: 788 FGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLRPQAEDL--WELRRH 845
Query: 538 MYSDGVDEYAINKFLCQVF 556
+++D +D A+ K + VF
Sbjct: 846 VHADAIDFLAVKKLVQHVF 864
Score = 95 (38.5 bits), Expect = 1.0e-66, Sum P(4) = 1.0e-66
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 772 LRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
+R DI+ L S +F+ RAVAR+ HGI SP YP+ ++ +
Sbjct: 1140 IRRDIRHLLSSWPEQQFSGRAVARVFHGIGSPRYPAQVYGR 1180
Score = 71 (30.1 bits), Expect = 1.0e-66, Sum P(4) = 1.0e-66
Identities = 27/94 (28%), Positives = 42/94 (44%)
Query: 579 DIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH--KTTPTLLADK-DKMVATILKK 635
D+ EE + TLL LEL ++L+LL C L T LA + + A + ++
Sbjct: 921 DVPEEAIETLLCYLELHPQRWLKLLEPTYARCHLRCPGGPTQLQALARRCPPLAACLAQQ 980
Query: 636 SETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK 669
S FD+ +A+S+G V L L+
Sbjct: 981 SPENTASVEFDVVELADSMGWELAPVRRALRQLQ 1014
Score = 41 (19.5 bits), Expect = 1.0e-66, Sum P(4) = 1.0e-66
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 133 GNFVRLNLNNNKRKFANKGKRNKSFR 158
GN+VRLN+ KR R++ R
Sbjct: 327 GNYVRLNMKQ-KRYVRGLAPRSRLLR 351
>UNIPROTKB|F1RV44 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0003676 GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 GO:GO:0045875 InterPro:IPR021110 Pfam:PF11719
OMA:DMPEEAI EMBL:CU468594 Ensembl:ENSSSCT00000006463 Uniprot:F1RV44
Length = 1227
Score = 553 (199.7 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 131/379 (34%), Positives = 202/379 (53%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +F GQ + +L ST+LVLPTG GKSLCYQ+PA++ P LTLV+ PL++L
Sbjct: 507 GHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISPLMSL 566
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQ+ LPP + + S ++ ++ + ++VL +SPE A + T
Sbjct: 567 MDDQVSGLPPGLKAACIHSGMSKKQRNSALQKARSAQVQVLMLSPEALAGAGAAGLAFLT 626
Query: 314 SL--ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVM 371
L ++ +DEAHC+S+WSHNFRP Y+ V C L + DV
Sbjct: 627 QLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERV-GVSCFLGLTATATRSTALDVA 685
Query: 372 SALEIPLSNLIQ-KAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF--HRSSK 421
L + ++++ + + NL LSVS+ + Q ++R +D + + R
Sbjct: 686 QHLGVAEESVLRGQGTIPANLHLSVSMDRDPDQALVTLLQSDRFCALDSIIIYCNRREDT 745
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
+ ET + ++YH+G+ +++R R+Q F ++RVVVATVA
Sbjct: 746 ERVAALLRTCLRETWALGPGGWAPEAVAEAYHAGMCSRERWRVQRAFMEGRLRVVVATVA 805
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFRLRSL 537
FGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL +D+ + LR
Sbjct: 806 FGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLRPQAEDL--WELRRH 863
Query: 538 MYSDGVDEYAINKFLCQVF 556
+++D +D A+ K + VF
Sbjct: 864 VHADAIDFLAVKKLVQHVF 882
Score = 95 (38.5 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 772 LRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
+R DI+ L S +F+ RAVAR+ HGI SP YP+ ++ +
Sbjct: 1158 IRRDIRHLLSSWPEQQFSGRAVARVFHGIGSPRYPAQVYGR 1198
Score = 71 (30.1 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 27/94 (28%), Positives = 42/94 (44%)
Query: 579 DIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH--KTTPTLLADK-DKMVATILKK 635
D+ EE + TLL LEL ++L+LL C L T LA + + A + ++
Sbjct: 939 DVPEEAIETLLCYLELHPQRWLKLLEPTYARCHLRCPGGPTQLQALARRCPPLAACLAQQ 998
Query: 636 SETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK 669
S FD+ +A+S+G V L L+
Sbjct: 999 SPENTASVEFDVVELADSMGWELAPVRRALRQLQ 1032
Score = 41 (19.5 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 133 GNFVRLNLNNNKRKFANKGKRNKSFR 158
GN+VRLN+ KR R++ R
Sbjct: 343 GNYVRLNMKQ-KRYVRGLAPRSRLLR 367
>UNIPROTKB|Q47WD5 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 605 (218.0 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 158/419 (37%), Positives = 233/419 (55%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+D FR GQ + I +L +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 21 FGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLPHLTLVVSPLLALMKD 80
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
QL L I + S+ + E + ++ G IKVL VS ERF N F F +
Sbjct: 81 QLSFLASKGIKAASIDSTLKGNEAQTVMAGVRDGDIKVLMVSVERFKNERFRQ-FIESVP 139
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVMSALE 375
+S++VVDEAHC+SEW HNFRP Y+ N+ +L + +D+ +
Sbjct: 140 VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQAL--NISLVLLLTATATRKVKQDMAAKFA 197
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI-LQISGKHFE 434
I +++Q R NL LSV +N++ ++++ S + + Y+ LQ S E
Sbjct: 198 IRDEHIVQTGFYRSNLDLSVLPVTQAHKNKQ---LEQIISAQQGAGIVYVTLQHSA---E 251
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
T +++YL I+ +YH+G + RS+IQ+ F + KI+V+VAT+AFGMG+DK ++ V
Sbjct: 252 T--VAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGIDKSNIRFV 309
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVD----EYAI 548
IHY LP+S+E Y QEIGRAGRDG S C LD + + + +Y D + E +
Sbjct: 310 IHYDLPKSIENYSQEIGRAGRDGLPSQCFTLANLDGLN--TVENFVYGDTPEFTGIEMLL 367
Query: 549 NKFLCQVFTN---GMN---SHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQYL 600
N +V T+ G++ S GK L S +IK+ + TLL LEL G I+ L
Sbjct: 368 NTIKSEVITSTHVGISDNRSEGKW-ELQILQLSNAVNIKQLPLKTLLVQLELAGVIEPL 425
Score = 37 (18.1 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 664 QLLNLKMRGEITYELKDPAYCYTI 687
++ N+K+ EL DP+ C T+
Sbjct: 509 EVFNIKLN-----ELADPSLCQTL 527
>TIGR_CMR|CPS_4237 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0004386 "helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 605 (218.0 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 158/419 (37%), Positives = 233/419 (55%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+D FR GQ + I +L +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 21 FGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLPHLTLVVSPLLALMKD 80
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
QL L I + S+ + E + ++ G IKVL VS ERF N F F +
Sbjct: 81 QLSFLASKGIKAASIDSTLKGNEAQTVMAGVRDGDIKVLMVSVERFKNERFRQ-FIESVP 139
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVMSALE 375
+S++VVDEAHC+SEW HNFRP Y+ N+ +L + +D+ +
Sbjct: 140 VSMLVVDEAHCISEWGHNFRPDYLKLPSYCQAL--NISLVLLLTATATRKVKQDMAAKFA 197
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI-LQISGKHFE 434
I +++Q R NL LSV +N++ ++++ S + + Y+ LQ S E
Sbjct: 198 IRDEHIVQTGFYRSNLDLSVLPVTQAHKNKQ---LEQIISAQQGAGIVYVTLQHSA---E 251
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
T +++YL I+ +YH+G + RS+IQ+ F + KI+V+VAT+AFGMG+DK ++ V
Sbjct: 252 T--VAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGIDKSNIRFV 309
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVD----EYAI 548
IHY LP+S+E Y QEIGRAGRDG S C LD + + + +Y D + E +
Sbjct: 310 IHYDLPKSIENYSQEIGRAGRDGLPSQCFTLANLDGLN--TVENFVYGDTPEFTGIEMLL 367
Query: 549 NKFLCQVFTN---GMN---SHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQYL 600
N +V T+ G++ S GK L S +IK+ + TLL LEL G I+ L
Sbjct: 368 NTIKSEVITSTHVGISDNRSEGKW-ELQILQLSNAVNIKQLPLKTLLVQLELAGVIEPL 425
Score = 37 (18.1 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 664 QLLNLKMRGEITYELKDPAYCYTI 687
++ N+K+ EL DP+ C T+
Sbjct: 509 EVFNIKLN-----ELADPSLCQTL 527
>UNIPROTKB|Q33DM4 [details] [associations]
symbol:recql4 "RecQ4 protein" species:8355 "Xenopus laevis"
[GO:0000785 "chromatin" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IMP] [GO:0035563 "positive regulation of chromatin
binding" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006260
GO:GO:0008270 GO:GO:0000785 GO:GO:0003682 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0035563 CTD:9401
HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110 Pfam:PF11719
EMBL:AB213025 RefSeq:NP_001089182.1 UniGene:Xl.51337
ProteinModelPortal:Q33DM4 GeneID:734225 KEGG:xla:734225
Xenbase:XB-GENE-997817 Uniprot:Q33DM4
Length = 1503
Score = 320 (117.7 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 77/217 (35%), Positives = 113/217 (52%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLVAL 253
GY SFR GQ +A+ +L S++++L TG GKSLCYQ+PA + ++LV+ PLV+L
Sbjct: 726 GYRSFRSGQEQAVMRILSGLSSLVILSTGMGKSLCYQLPAYMYAKRSRCISLVISPLVSL 785
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS---IF 310
M DQ+ LPP + + S+ + I ++ G + VL +SPE + F +
Sbjct: 786 MDDQVSGLPPKLKAVCIHSNMTRTQREAAIEKVKQGKVHVLLLSPEALVGGGFSGSSCLP 845
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
A L ++ +DEAHCVSEWSHNFRP Y+ V C+L +
Sbjct: 846 PADQLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERL-GVNCLLGLTATATRATAE 904
Query: 369 DVMSALEI-PLSNL-IQKAQLRDNLQLSVSLSGNNRQ 403
DV L + P + ++ A + NL LSVS+ N Q
Sbjct: 905 DVAHHLGVSPEGGIPVRMASVPPNLHLSVSMDRNRDQ 941
Score = 294 (108.6 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 58/109 (53%), Positives = 78/109 (71%)
Query: 450 KSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQE 509
+SYH+G+ A +R R+Q F ++R+VVATVAFGMGLDK DV +IHY++P++ E YVQE
Sbjct: 1021 ESYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQE 1080
Query: 510 IGRAGRDGRLSYCHLFLDDI--TYFRLRSLMYSDGVDEYAINKFLCQVF 556
IGRAGRDG+ + CHLFLD LR +Y+D VD A+ K + +VF
Sbjct: 1081 IGRAGRDGKDAQCHLFLDPEGQDMDELRRHIYTDSVDYIAVKKLVRKVF 1129
Score = 106 (42.4 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 33/119 (27%), Positives = 54/119 (45%)
Query: 709 ENCKVRKLDRMFHA----AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDN-----C 759
E + +L FHA A C + S L +LDYF D
Sbjct: 1360 ERTSLNQLKSCFHAFQSVAYRTSSACAEKMSAERSAQLKAL---LLDYFEKRDTELEAKV 1416
Query: 760 DVPN------KIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
+ P+ K+ ++ +R+D++ FL + +F+ RA+ARI HGI SP YP+ ++ +
Sbjct: 1417 EDPDEELQQIKVQEAKDQVRSDVRHFLSIHEEERFSGRALARIFHGIGSPCYPAQVYGR 1475
Score = 73 (30.8 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 39/143 (27%), Positives = 58/143 (40%)
Query: 572 ESASRKFDIKEEVMLTLLTCLELGEIQYL-QLLPEL---KVTCTLNFHKTTPTLLADKDK 627
E + DI+EE + T+L LEL +L QL P L +V C + LLA
Sbjct: 1201 EETVQSLDIREEAIETMLCYLELNPSHWLEQLHPTLSHCRVVCYSGPQQLR--LLARSCP 1258
Query: 628 MVATILKKSE------TKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDP 681
VA L + T F++ +A+S+G + V L +L+ R + K
Sbjct: 1259 PVAVCLARERLAGVDHTHVSSTEFNVVELADSMGWEVVPVKRALRDLQWRRQPDKGFKGT 1318
Query: 682 AYCYTIVEVPSDFCALSAHLTKW 704
+VE F LS H +
Sbjct: 1319 GRSGVLVE----FSKLSFHFRSY 1337
Score = 48 (22.0 bits), Expect = 2.1e-59, Sum P(5) = 2.1e-59
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 84 NDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAKLRKCNGEGNFVRLNL 140
+D ++ +P++ Q + D F + +++ + V ++ + E NFVR+NL
Sbjct: 512 DDPAMESPASEQVTKAVSEDLFGELEEE-PVQRSSVKTVNTRMPQIKSE-NFVRINL 566
Score = 40 (19.1 bits), Expect = 2.0e-30, Sum P(5) = 2.0e-30
Identities = 14/73 (19%), Positives = 29/73 (39%)
Query: 257 QLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLI 316
++ +PP +H R + + ++ + G + + V R +S TSL
Sbjct: 921 RMASVPPNLHLSVSMDRNRDQALVTLLKGERFGCLDSVIVYCTRREETQRISALLRTSLQ 980
Query: 317 SLVVVDEAHCVSE 329
+ V +H S+
Sbjct: 981 GVTVSANSHLNSQ 993
>UNIPROTKB|Q8EEK1 [details] [associations]
symbol:SO_2380 "ATP-dependent DNA helicase RecQ family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:GHNFRPD ProtClustDB:CLSK906704 RefSeq:NP_717970.1
ProteinModelPortal:Q8EEK1 GeneID:1170099 KEGG:son:SO_2380
PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 574 (207.1 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 151/423 (35%), Positives = 224/423 (52%)
Query: 186 DENLGRLLRLV--YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
DE + RL +G+ FR GQ E I +L +S++ + PTG+GKSLCYQ A+ LP L
Sbjct: 9 DEGSALISRLQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHL 68
Query: 244 TLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
TLVV PL+AL+ DQL L I + S+ PE+ + +R + G +K+L VS ERF
Sbjct: 69 TLVVSPLLALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQLKLLMVSVERFK 128
Query: 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXX 362
N F + L S++VVDEAHC+SEW HNFRP Y+ ++ +L +
Sbjct: 129 NERFRQFIQSIPL-SMLVVDEAHCISEWGHNFRPDYLKLPDYCREL--SIPLVLLLTATA 185
Query: 363 XXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
+D+ +I +++Q R NL L+V + +N+ ++ SF +
Sbjct: 186 TRKVKQDMAIRFDIKPQHIVQTGFYRSNLDLTVLPVAS--ENKLRILKQQLQSFDGAGIV 243
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y LQ H ++ S+ LC ++YH+G R +IQ F + ++VVAT+AF
Sbjct: 244 YVTLQ----HTAEEVASQ-LCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAF 298
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYS 540
GMG+DK ++ VIHY LP+S+E Y QEIGRAGRDG+LS+C LD I + + +Y
Sbjct: 299 GMGIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLDGIN--TVENFVYG 356
Query: 541 DGVDEYAINKFLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLEL-GEI 597
D + +I + + ++ + L L +S R +K TLL LEL G I
Sbjct: 357 DTPELASIATVIDSISQETQANYWEVQLNQLANQSNIRLLPLK-----TLLVQLELQGVI 411
Query: 598 QYL 600
+ L
Sbjct: 412 KPL 414
Score = 45 (20.9 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 22/79 (27%), Positives = 33/79 (41%)
Query: 740 LHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVAR---- 795
L TP L K++ YF + +V +I Q F ++ L NL F A +
Sbjct: 507 LSTPTLAKDLYHYFADKEAKEVA-RIAQLVRFF--ELTTCLNYNLARYFDDNAAPKSCGH 563
Query: 796 --ILHG-IASPAYPST-IW 810
+ G +A Y +T IW
Sbjct: 564 CSVCRGQVAKLTYSNTPIW 582
>TIGR_CMR|SO_2380 [details] [associations]
symbol:SO_2380 "RecQ domain protein" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HSSP:P15043 HOGENOM:HOG000044388 KO:K03654 OMA:GHNFRPD
ProtClustDB:CLSK906704 RefSeq:NP_717970.1 ProteinModelPortal:Q8EEK1
GeneID:1170099 KEGG:son:SO_2380 PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 574 (207.1 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 151/423 (35%), Positives = 224/423 (52%)
Query: 186 DENLGRLLRLV--YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
DE + RL +G+ FR GQ E I +L +S++ + PTG+GKSLCYQ A+ LP L
Sbjct: 9 DEGSALISRLQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHL 68
Query: 244 TLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
TLVV PL+AL+ DQL L I + S+ PE+ + +R + G +K+L VS ERF
Sbjct: 69 TLVVSPLLALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQLKLLMVSVERFK 128
Query: 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXX 362
N F + L S++VVDEAHC+SEW HNFRP Y+ ++ +L +
Sbjct: 129 NERFRQFIQSIPL-SMLVVDEAHCISEWGHNFRPDYLKLPDYCREL--SIPLVLLLTATA 185
Query: 363 XXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
+D+ +I +++Q R NL L+V + +N+ ++ SF +
Sbjct: 186 TRKVKQDMAIRFDIKPQHIVQTGFYRSNLDLTVLPVAS--ENKLRILKQQLQSFDGAGIV 243
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y LQ H ++ S+ LC ++YH+G R +IQ F + ++VVAT+AF
Sbjct: 244 YVTLQ----HTAEEVASQ-LCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAF 298
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYS 540
GMG+DK ++ VIHY LP+S+E Y QEIGRAGRDG+LS+C LD I + + +Y
Sbjct: 299 GMGIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLDGIN--TVENFVYG 356
Query: 541 DGVDEYAINKFLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLEL-GEI 597
D + +I + + ++ + L L +S R +K TLL LEL G I
Sbjct: 357 DTPELASIATVIDSISQETQANYWEVQLNQLANQSNIRLLPLK-----TLLVQLELQGVI 411
Query: 598 QYL 600
+ L
Sbjct: 412 KPL 414
Score = 45 (20.9 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 22/79 (27%), Positives = 33/79 (41%)
Query: 740 LHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVAR---- 795
L TP L K++ YF + +V +I Q F ++ L NL F A +
Sbjct: 507 LSTPTLAKDLYHYFADKEAKEVA-RIAQLVRFF--ELTTCLNYNLARYFDDNAAPKSCGH 563
Query: 796 --ILHG-IASPAYPST-IW 810
+ G +A Y +T IW
Sbjct: 564 CSVCRGQVAKLTYSNTPIW 582
>TIGR_CMR|BA_2818 [details] [associations]
symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
DNASU:1085972 EnsemblBacteria:EBBACT00000011651
EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
BioCyc:BANT260799:GJAJ-2691-MONOMER
BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
Length = 705
Score = 563 (203.2 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 129/334 (38%), Positives = 189/334 (56%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+ +V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLFYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ +LA+ D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEE-PLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R+AY+ + ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQ----DRNAYLADYI--RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACIL 331
Score = 51 (23.0 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 24/93 (25%), Positives = 42/93 (45%)
Query: 716 LDRMFHAAVFAVDVCEKTHGCNGSLHTP-CLQKNILDYFRGDDNCDVPNKIGQSSPFLRA 774
+D+ + F+ ++ EK HT CLQ IL YF G++ + + G + R
Sbjct: 345 IDQSIGESRFSNEL-EKLQNMTDYCHTEQCLQSFILQYF-GEEPKEDCGRCGNCTDN-RE 401
Query: 775 DIKVFLQSNL--------NAKFTPRAVARILHG 799
I V +S + N +F + +A++L G
Sbjct: 402 SIDVTRESQMVLSCMIRTNQRFGKQMIAQVLTG 434
>UNIPROTKB|Q4JNX8 [details] [associations]
symbol:RTS "RECQL4-helicase-like protein" species:8355
"Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0000785
GO:GO:0003682 GO:GO:0003676 GO:GO:0006270 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110
Pfam:PF11719 EMBL:DQ059311 RefSeq:NP_001089101.1 UniGene:Xl.86701
ProteinModelPortal:Q4JNX8 GeneID:733317 KEGG:xla:733317 CTD:733317
Uniprot:Q4JNX8
Length = 1500
Score = 306 (112.8 bits), Expect = 8.6e-58, Sum P(5) = 8.6e-58
Identities = 76/217 (35%), Positives = 111/217 (51%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLVAL 253
GY SFR GQ +A+ +L S++ +L TG GKSLCYQ+PA + ++LV+ PLV+L
Sbjct: 723 GYRSFRSGQEQAVMRILSGFSSLGILSTGMGKSLCYQLPAYMYAKRSRCISLVISPLVSL 782
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS---IF 310
M DQ+ L P + + S+ + I ++ G + VL +SPE + F +
Sbjct: 783 MDDQVSGLSPKLKAVCIHSNMTRTQREAAIEKVKQGKVHVLLLSPEALVGGGFSGSSCLP 842
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
A L ++ +DEAHCVSEWSHNFRP Y+ V C+L +
Sbjct: 843 PADQLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERL-GVNCLLGLTATATRATAE 901
Query: 369 DVMSALEI-PLSNL-IQKAQLRDNLQLSVSLSGNNRQ 403
DV L + P + ++ A + NL LSVS+ N Q
Sbjct: 902 DVAHHLGVSPEGGIPVRMASVPPNLHLSVSMDRNRDQ 938
Score = 294 (108.6 bits), Expect = 8.6e-58, Sum P(5) = 8.6e-58
Identities = 58/109 (53%), Positives = 78/109 (71%)
Query: 450 KSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQE 509
+SYH+G+ A +R R+Q F ++R+VVATVAFGMGLDK DV +IHY++P++ E YVQE
Sbjct: 1018 ESYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVRGIIHYNMPKNFESYVQE 1077
Query: 510 IGRAGRDGRLSYCHLFLDDI--TYFRLRSLMYSDGVDEYAINKFLCQVF 556
IGRAGRDG+ + CHLFLD LR +Y+D VD A+ K + +VF
Sbjct: 1078 IGRAGRDGKDAQCHLFLDPEGQDMDELRRHIYTDSVDYIAVKKLVRKVF 1126
Score = 106 (42.4 bits), Expect = 8.6e-58, Sum P(5) = 8.6e-58
Identities = 33/119 (27%), Positives = 54/119 (45%)
Query: 709 ENCKVRKLDRMFHA----AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDN-----C 759
E + +L FHA A C + S L +LDYF D
Sbjct: 1357 ERTSLNQLKSCFHAFQSVAYRTSSACAEKMSAERSAQLKAL---LLDYFEKRDTELEAKV 1413
Query: 760 DVPN------KIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
+ P+ K+ ++ +R+D++ FL + +F+ RA+ARI HGI SP YP+ ++ +
Sbjct: 1414 EDPDEELQQIKVQEAKDQVRSDVRHFLSIHEEERFSGRALARIFHGIGSPCYPAQVYGR 1472
Score = 73 (30.8 bits), Expect = 8.6e-58, Sum P(5) = 8.6e-58
Identities = 39/143 (27%), Positives = 58/143 (40%)
Query: 572 ESASRKFDIKEEVMLTLLTCLELGEIQYL-QLLPEL---KVTCTLNFHKTTPTLLADKDK 627
E + DI+EE + T+L LEL +L QL P L +V C + LLA
Sbjct: 1198 EETVQSLDIREEAIETMLCYLELNPSHWLEQLHPTLSHCRVVCYSGPQQLR--LLARSCP 1255
Query: 628 MVATILKKSE------TKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDP 681
VA L + T F++ +A+S+G + V L +L+ R + K
Sbjct: 1256 PVAVCLARERLAGVDHTHVSSTEFNVVELADSMGWEVVPVKRALRDLQWRRQPDKGFKGT 1315
Query: 682 AYCYTIVEVPSDFCALSAHLTKW 704
+VE F LS H +
Sbjct: 1316 GRSGVLVE----FSKLSFHFRSY 1334
Score = 48 (22.0 bits), Expect = 8.6e-58, Sum P(5) = 8.6e-58
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 84 NDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAKLRKCNGEGNFVRLNL 140
+D ++ +P++ Q + D F + +++ + V ++ + E NFVR+NL
Sbjct: 512 DDPAMESPASEQVTKAVSEDLFGELEEE-PVQRSSVKTVNTRMPQIKSE-NFVRINL 566
Score = 40 (19.1 bits), Expect = 1.9e-30, Sum P(5) = 1.9e-30
Identities = 14/73 (19%), Positives = 29/73 (39%)
Query: 257 QLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLI 316
++ +PP +H R + + ++ + G + + V R +S TSL
Sbjct: 918 RMASVPPNLHLSVSMDRNRDQALVTLLKGERFGCLDSVIVYCTRREETQRISALLRTSLQ 977
Query: 317 SLVVVDEAHCVSE 329
+ V +H S+
Sbjct: 978 GVTVSANSHLNSQ 990
>UNIPROTKB|O34748 [details] [associations]
symbol:recQ "Probable ATP-dependent DNA helicase RecQ"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 EMBL:AF027868 PIR:F69901 RefSeq:NP_389803.1
ProteinModelPortal:O34748 SMR:O34748
EnsemblBacteria:EBBACT00000001699 GeneID:939671 KEGG:bsu:BSU19220
PATRIC:18975693 GenoList:BSU19220 KO:K03654 OMA:HAAYINS
ProtClustDB:CLSK887416 BioCyc:BSUB:BSU19220-MONOMER
TIGRFAMs:TIGR01389 Uniprot:O34748
Length = 591
Score = 554 (200.1 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 118/335 (35%), Positives = 189/335 (56%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ FR GQ EAI++V + +++T ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ +++S+Q +E+ E + ++ GA K+ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSIEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
+ LV +DEAHC+S+W H+FRPSY I+A+ D
Sbjct: 128 LQGID-VPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDK-PVIMALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + R+NL V + G N+ ++DE + ++++H + +
Sbjct: 186 ICKQLHIQKENTVYTGFSRENLTFKV-VKGENKDR----FIDE---YVQNNRHEAGIVYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D I L N + YH G+ R QE F +++++V+VAT AFGMG+DK
Sbjct: 238 ATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVL 332
Score = 42 (19.8 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 741 HTP-CLQKNILDYFRGDDNCDVPNKIG 766
HT CLQ+ IL YF G+ D + G
Sbjct: 370 HTEDCLQRFILMYF-GEKEPDACGQCG 395
>FB|FBgn0040290 [details] [associations]
symbol:RecQ4 "RecQ4" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS;IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0045740 "positive
regulation of DNA replication" evidence=IMP] [GO:0010971 "positive
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006284 "base-excision repair" evidence=IMP] [GO:0051301 "cell
division" evidence=IMP] [GO:0002164 "larval development"
evidence=IMP] [GO:0007307 "eggshell chorion gene amplification"
evidence=IMP] [GO:0036292 "DNA rewinding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI;IMP]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0007095 EMBL:AE014296 GO:GO:0051301 GO:GO:0010971
GO:GO:0006284 GO:GO:0008284 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 GO:GO:0003697 GO:GO:0006302 GO:GO:0045740
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0007307
GO:GO:0002164 HSSP:P15043 KO:K10730 InterPro:IPR021110 Pfam:PF11719
GO:GO:0036292 FlyBase:FBgn0040290 RefSeq:NP_652607.1
UniGene:Dm.1556 ProteinModelPortal:Q9VSE6 SMR:Q9VSE6 IntAct:Q9VSE6
PRIDE:Q9VSE6 EnsemblMetazoa:FBtr0076729 GeneID:53438
KEGG:dme:Dmel_CG7487 UCSC:CG7487-RA CTD:53438 InParanoid:Q9VSE6
OMA:GMPASRR PhylomeDB:Q9VSE6 GenomeRNAi:53438 NextBio:841159
ArrayExpress:Q9VSE6 Bgee:Q9VSE6 Uniprot:Q9VSE6
Length = 1579
Score = 303 (111.7 bits), Expect = 8.8e-55, Sum P(4) = 8.8e-55
Identities = 62/127 (48%), Positives = 85/127 (66%)
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIG 511
YH+G+PA R +Q+ F SN++R+VVAT+AFGMG++K D+ AVIHY++P + E YVQEIG
Sbjct: 1143 YHAGMPASRRRTVQKAFMSNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIG 1202
Query: 512 RAGRDGRLSYCHLFLDDI--TYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSL 569
RAGRDG S+CHLFLD LR +YS+ +D + I K L ++F CS
Sbjct: 1203 RAGRDGLPSHCHLFLDAKGGDQSELRRHVYSNSIDRHVIRKLLQKIFVP--------CSC 1254
Query: 570 VKESASR 576
KE++ R
Sbjct: 1255 DKEASKR 1261
Score = 294 (108.6 bits), Expect = 8.8e-55, Sum P(4) = 8.8e-55
Identities = 75/215 (34%), Positives = 112/215 (52%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLV 251
++G+ +FR GQ AI L S+++ L TG+GKSLCYQ+PA + + +TLV+ PLV
Sbjct: 865 MFGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLPAYLYSRKVGAITLVISPLV 924
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FL 307
+LM DQ+ +P + L ++Q + + ++I G I +L VSPE + + F
Sbjct: 925 SLMEDQVTGVPHFLRAHCLHTNQTAPQRMKIQQMIANGEIDILLVSPEAVVAGERATGFG 984
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXL 367
+I I+ +DEAHCVS+WSHNFRPSY+ V +L +
Sbjct: 985 AILRQLPPIAFACIDEAHCVSQWSHNFRPSYLMICKVLRKNL-GVRTVLGLTATATLPTR 1043
Query: 368 RDVMSALEIPLSN--LIQKAQLRDNLQLSVSLSGN 400
+++ L I +I L DNL LSVS N
Sbjct: 1044 VSIINHLGISDGERGIISDIPLPDNLVLSVSKDEN 1078
Score = 113 (44.8 bits), Expect = 8.8e-55, Sum P(4) = 8.8e-55
Identities = 51/189 (26%), Positives = 81/189 (42%)
Query: 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYC--YTI---VEVPSDFC---- 695
F + +A IG + V QL +L+ Y + P Y + ++VP DF
Sbjct: 1369 FSVTDIAAGIGWNSGVVKYQLKDLEWVKVNGYPKRSPITVSFYDLGFRIKVPGDFTESEI 1428
Query: 696 --ALSAHLTKWLSEVENCKVRKLDRMFHA-AVFAVDVCEKTHGCNGSL---HTPCLQKNI 749
AL T+ + + E ++ +L + H A A C + CN L+ +
Sbjct: 1429 DNALDTLYTRSVKQ-ERTQLIQLQYVAHGLAAVAYSSCGQC--CNADFPQDRGEQLKAIV 1485
Query: 750 LDYFRGDDNCDVPNKIGQSS-PF--LRADIKVFLQSNLNAKFTPRAVARILHGIASPAYP 806
+YF D D+ +I S+ P + D+ + + FT R +ARI HGI SP YP
Sbjct: 1486 RNYFANDYPQDLELEIEPSNVPDENIIDDVHALINMYPDNTFTGRNIARIFHGIMSPNYP 1545
Query: 807 STIWSKTHF 815
+ IW + F
Sbjct: 1546 AVIWGRCKF 1554
Score = 46 (21.3 bits), Expect = 8.8e-55, Sum P(4) = 8.8e-55
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 84 NDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAKLRK-CNGEGNFVRLNLNN 142
N+ L + + + I + D + ++ + N + +VP A + + NF NL+
Sbjct: 272 NNPMLASEHSKESIKTLVDDGWLRRNTKENTLDEEVPFAEANNNSGTSKKTNFGLANLDL 331
Query: 143 NKRK 146
+K K
Sbjct: 332 SKLK 335
>TIGR_CMR|SO_4241 [details] [associations]
symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
ProtClustDB:CLSK907564 Uniprot:Q8E9M8
Length = 607
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 127/355 (35%), Positives = 203/355 (57%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D+ L L V+GY FRDGQ E I+ V + ++++PTG GKSLCYQ+PA+++ G+T+
Sbjct: 10 DDPLSERLAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGITI 69
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVA-ETIRLIQVGAIKVLFVSPERFLN 303
VV PL++LM DQ+ L ++ +L+SSQ P E++ E +R + +G +K+L+VSPER L
Sbjct: 70 VVSPLISLMKDQVDSLLQTGVNAAYLNSSQ-PRELSLEVLRQLHLGELKLLYVSPERLLT 128
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXX 363
ADF+ + L S+ +DEAHC+S+W H+FRP Y +V ++A+
Sbjct: 129 ADFIERMQSLPL-SMFAIDEAHCISQWGHDFRPEY-AALGQLKQLFPHVP-MMALTATAD 185
Query: 364 XXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
+++ L I L+ R N++ +V+ N R + + + SS
Sbjct: 186 QATRQNICERLGINPFKLLSSFD-RPNIRYTVAEKLNAANQLRQFLLQQ----NGSSG-- 238
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I+ S + D ++ L K+YH+G+ ++R +Q+ F ++I +VVATVAFG
Sbjct: 239 -IIYCSSRR-RVDEVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFG 296
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
MG++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 297 MGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLI 351
>UNIPROTKB|Q9KVF0 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 119/346 (34%), Positives = 196/346 (56%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
+ L +++ VDEAHC+S+W H+FRP Y NV ++A+ D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEY-ASLGQLKQRFPNVP-VMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>TIGR_CMR|VC_0196 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 119/346 (34%), Positives = 196/346 (56%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
+ L +++ VDEAHC+S+W H+FRP Y NV ++A+ D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEY-ASLGQLKQRFPNVP-VMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>TIGR_CMR|SPO_0107 [details] [associations]
symbol:SPO_0107 "ATP-dependent DNA helicase RecQ"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
GO:GO:0009432 HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389
OMA:YCLSRAK RefSeq:YP_165381.1 ProteinModelPortal:Q5LWQ8
GeneID:3194995 KEGG:sil:SPO0107 PATRIC:23373451
ProtClustDB:CLSK933158 Uniprot:Q5LWQ8
Length = 679
Score = 517 (187.1 bits), Expect = 1.7e-49, P = 1.7e-49
Identities = 123/355 (34%), Positives = 192/355 (54%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LLR V+G+D+FR GQ E + V + ++ + ++PTG GKSLC+Q+PA++ G+T+V+ PL+
Sbjct: 7 LLRDVFGFDAFRPGQEEIAQAVAEGENVLAIMPTGGGKSLCFQLPALMREGVTVVISPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+R L + G L+S PEE + ++ G +K+L+++PER + + +
Sbjct: 67 ALMRDQVRSLQEAGVEAGALTSGNTPEETEAVWQALEAGRLKLLYMAPERLASGAAMGML 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDV 370
+SL+ VDEAHCVS+W H+FRP Y+ + A +
Sbjct: 127 RRIG-VSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALGVPLAAFTATADAETQAEIVAK 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ E P S L + R N+ L+ + + R+ ++ F + + + G
Sbjct: 186 LFDGEEPRSFL--RGFDRPNIHLAFAAKDSPRR--------QILDFAGARRGQSGIVYCG 235
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L ++ S YH G+ A+DR ++ F +VVATVAFGMG+DK D
Sbjct: 236 TRAKTETLAQALREDGHSACHYHGGMEAEDRRIVETRFAREDGLIVVATVAFGMGIDKPD 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGR-LSYCHLF-LDDITYFRLRSLMYSDGV 543
+ V H LP+S+E Y QEIGRAGRDG LF DDI RLR +G+
Sbjct: 296 IRWVAHADLPKSIEAYYQEIGRAGRDGGPAETLTLFGPDDI---RLRRSQIDEGL 347
>MGI|MGI:1931028 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0001501 "skeletal system
development" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0043473 "pigmentation" evidence=IMP] [GO:0045875 "negative
regulation of sister chromatid cohesion" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0048705 "skeletal system
morphogenesis" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 MGI:MGI:1931028 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008284
GO:GO:0006260 GO:GO:0008270 GO:GO:0003676 GO:GO:0006310
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0048705 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043473 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
GO:GO:0045875 CTD:9401 HOGENOM:HOG000264957 HOVERGEN:HBG065925
KO:K10730 InterPro:IPR021110 Pfam:PF11719 EMBL:AB039882
EMBL:AB175741 EMBL:AB042529 IPI:IPI00119366 IPI:IPI00462416
RefSeq:NP_478121.2 UniGene:Mm.18373 ProteinModelPortal:Q75NR7
SMR:Q75NR7 IntAct:Q75NR7 STRING:Q75NR7 PhosphoSite:Q75NR7
PRIDE:Q75NR7 DNASU:79456 Ensembl:ENSMUST00000036852 GeneID:79456
KEGG:mmu:79456 UCSC:uc007wlv.1 OrthoDB:EOG4CJVGG NextBio:349927
Bgee:Q75NR7 CleanEx:MM_RECQL4 Genevestigator:Q75NR7
GermOnline:ENSMUSG00000033762 Uniprot:Q75NR7
Length = 1216
Score = 443 (161.0 bits), Expect = 7.1e-49, Sum P(4) = 7.1e-49
Identities = 116/336 (34%), Positives = 170/336 (50%)
Query: 241 PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPER 300
P LTLVV PL++LM DQ+ LP + L S ++ ++ ++ + VL VSPE
Sbjct: 541 PCLTLVVSPLLSLMDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEA 600
Query: 301 FLNADFL---SIFTATSL--ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECI 355
+ S+ A L I+ +DE HC+S+WSHNFRP Y+ V C
Sbjct: 601 LVGCGARGPGSLPQAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHM-GVRCF 659
Query: 356 LAMXXXXXXXXLRDVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQ-------NERS 407
L + RDV L I L A + NL LSVS+ ++ Q +R
Sbjct: 660 LGLTATATRSTARDVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRF 719
Query: 408 AYVDEVFSF---HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRI 464
+D V + R + L + D R C ++YH+G+ +++R R+
Sbjct: 720 RTLDSVIIYCTRERIQNGWLALLRTCLSMVGDSRPRG-CGPEAIAEAYHAGMSSQERRRV 778
Query: 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
Q+ F +R+VVATVAFGMGLD+ DV AV+H LP S E YVQ IGRAGRDG+ ++CHL
Sbjct: 779 QQAFMRGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHL 838
Query: 525 FL----DDITYFRLRSLMYSDGVDEYAINKFLCQVF 556
F+ +D+ + LR ++D D A+ + + +VF
Sbjct: 839 FMHPQGEDL--WELRRHAHADSTDFLAVKRLVQRVF 872
Score = 335 (123.0 bits), Expect = 3.4e-36, Sum P(4) = 3.4e-36
Identities = 83/216 (38%), Positives = 112/216 (51%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
GY +FR GQ AI +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 494 GYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLSL 553
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL---SIF 310
M DQ+ LP + L S ++ ++ ++ + VL VSPE + S+
Sbjct: 554 MDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGARGPGSLP 613
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
A L I+ +DE HC+S+WSHNFRP Y+ V C L + R
Sbjct: 614 QAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHM-GVRCFLGLTATATRSTAR 672
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQ 403
DV L I L A + NL LSVS+ ++ Q
Sbjct: 673 DVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQ 708
Score = 98 (39.6 bits), Expect = 7.1e-49, Sum P(4) = 7.1e-49
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 772 LRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIW 810
+R D++ L +F+ RAVARI HGIASP YP+ ++
Sbjct: 1147 IRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVY 1185
Score = 76 (31.8 bits), Expect = 7.1e-49, Sum P(4) = 7.1e-49
Identities = 33/109 (30%), Positives = 50/109 (45%)
Query: 568 SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTL--LADK 625
+L +S + D+ EE + TLL LEL +L+LLP C L+ + L LA +
Sbjct: 912 ALPVQSTVQALDMTEEAIETLLCYLELHPRHWLELLPWTYAQCHLHCLGGSAQLQALAHR 971
Query: 626 DKMVATILKK---SETKQGQ--YVFDIPTVANSIGATTIDVSNQLLNLK 669
+A K +T QG+ F + +A+S+G V L LK
Sbjct: 972 CPPLAACQAKWPPKDTSQGRSSLEFGVVELADSMGWKLASVRQALHQLK 1020
Score = 58 (25.5 bits), Expect = 7.1e-49, Sum P(4) = 7.1e-49
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 89 PTPSN-PQGINEIKSDAFAKKKKQINLVSVDVPLPPAKLRKCNGEGNFVRLNLNNNK--R 145
PT N PQ N S A+ +K + PA L + GN++RLN+ N + R
Sbjct: 305 PTQVNVPQPCN---SSNQARTEKAKGTTHLHASPRPASLDR----GNYIRLNMKNKRFVR 357
Query: 146 KFANKGK 152
AN+G+
Sbjct: 358 VGANRGR 364
>UNIPROTKB|P15043 [details] [associations]
symbol:recQ species:83333 "Escherichia coli K-12"
[GO:0046914 "transition metal ion binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
[GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0017117 "single-stranded
DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
"DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
"SOS response" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
Genevestigator:P15043 Uniprot:P15043
Length = 609
Score = 497 (180.0 bits), Expect = 3.6e-47, P = 3.6e-47
Identities = 121/347 (34%), Positives = 191/347 (55%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GY FR GQ E I VL + ++V+PTG GKSLCYQIPA++L GLT+VV PL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + L+S+Q E+ E + + G I++L+++PER + +FL
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH 134
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
+ + L+ VDEAHC+S+W H+FRP Y +A+ +D
Sbjct: 135 LAHWNPV-LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLP--FMALTATADDTTRQD 191
Query: 370 VMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
++ L + LIQ + R N++ + + ++ YV E R I+
Sbjct: 192 IVRLLGLN-DPLIQISSFDRPNIRYML-MEKFKPLDQLMRYVQE----QRGKSG--IIYC 243
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + D +R L IS +YH+G+ R+ +QE F + +++VVATVAFGMG++K
Sbjct: 244 NSRAKVEDTAAR-LQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349
>FB|FBgn0002906 [details] [associations]
symbol:Blm "Bloom syndrome helicase ortholog" species:7227
"Drosophila melanogaster" [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:1901291 "negative
regulation of double-strand break repair via single-strand
annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
Uniprot:Q9VGI8
Length = 1487
Score = 521 (188.5 bits), Expect = 4.5e-47, P = 4.5e-47
Identities = 126/364 (34%), Positives = 197/364 (54%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G SFR QL+ I L +++PTG GKSLCYQ+PA++ G+T+V+ PL +L+ D
Sbjct: 733 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 792
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLI--QVGAIKVLFVSPERFLNA----DFLSI 309
Q+ L + I LS Q+ +V R + Q +K+L+V+PE+ ++ D L
Sbjct: 793 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDT 852
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
+ + IS V+DEAHCVS+W H+FRP Y NV I A+ D
Sbjct: 853 LNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFP-NVPTI-ALTATATPRVRLD 910
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY---IL 426
+++ L + + R NL+ V + + +D++ + RS ++ I
Sbjct: 911 ILAQLNLKNCKWFLSSFNRSNLRYRVL------PKKGVSTLDDISRYIRSKPQHFSGIIY 964
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+S K E D S+ +C + + SYH+G+ DR Q+ + + K+RV+ ATVAFGMG+
Sbjct: 965 CLSRK--ECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGI 1022
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK DV V+HYSLP+S+E Y QE GRAGRDG ++ C L+ + R++ ++ SD +Y
Sbjct: 1023 DKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQY 1082
Query: 547 AINK 550
+ K
Sbjct: 1083 NVKK 1086
>RGD|1307732 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0001501
"skeletal system development" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA;ISO] [GO:0032508
"DNA duplex unwinding" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISO] [GO:0043473
"pigmentation" evidence=IEA;ISO] [GO:0045875 "negative regulation
of sister chromatid cohesion" evidence=IEA;ISO] [GO:0048705
"skeletal system morphogenesis" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
RGD:1307732 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
IPI:IPI00366433 Ensembl:ENSRNOT00000045135 UCSC:RGD:1307732
ArrayExpress:D4A5W5 Uniprot:D4A5W5
Length = 1216
Score = 431 (156.8 bits), Expect = 9.5e-47, Sum P(5) = 9.5e-47
Identities = 111/336 (33%), Positives = 173/336 (51%)
Query: 241 PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPER 300
P LTLVV PL++LM DQ+ LP + L S ++ ++ ++ + VL VSPE
Sbjct: 541 PCLTLVVSPLLSLMDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEA 600
Query: 301 FLNADF---LSIFTATSL--ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECI 355
+ ++ A L ++ +DE HC+S+WSHNFRP Y+ V C
Sbjct: 601 LVGCGAKGPANLPPAAQLPPVAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHM-GVRCF 659
Query: 356 LAMXXXXXXXXLRDVMSALEIPLSNLIQ-KAQLRDNLQLSVSLSGNNRQ-------NERS 407
L + RDV L I + A + NL LSVS+ ++ Q +R
Sbjct: 660 LGLTATATRSTARDVAQHLGIAEELEVSGSASIPANLHLSVSMDRDSDQALVTLLQGDRF 719
Query: 408 AYVDEVFSF---HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRI 464
+D + + + ++ L + D R +++ ++YH+G+ +++R R+
Sbjct: 720 RTLDSIIIYCARRKDTERVAALLRTCLSTVRDSKPRGRGPETLA-EAYHAGMCSQERKRV 778
Query: 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
Q+ F +R+VVATVAFGMGLD+ DV AV+H LP S E YVQ IGRAGRDG+ ++CHL
Sbjct: 779 QQAFMQGHLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHL 838
Query: 525 FL----DDITYFRLRSLMYSDGVDEYAINKFLCQVF 556
FL +D+ + L +++D D A+ K + +VF
Sbjct: 839 FLHPQGEDL--WELSRHVHADSTDFLAVKKLVQRVF 872
Score = 325 (119.5 bits), Expect = 3.5e-34, Sum P(5) = 3.5e-34
Identities = 78/216 (36%), Positives = 112/216 (51%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 494 GHHTFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYAKRSPCLTLVVSPLLSL 553
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF---LSIF 310
M DQ+ LP + L S ++ ++ ++ + VL VSPE + ++
Sbjct: 554 MDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGAKGPANLP 613
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
A L ++ +DE HC+S+WSHNFRP Y+ V C L + R
Sbjct: 614 PAAQLPPVAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHM-GVRCFLGLTATATRSTAR 672
Query: 369 DVMSALEIPLSNLIQ-KAQLRDNLQLSVSLSGNNRQ 403
DV L I + A + NL LSVS+ ++ Q
Sbjct: 673 DVAQHLGIAEELEVSGSASIPANLHLSVSMDRDSDQ 708
Score = 97 (39.2 bits), Expect = 9.5e-47, Sum P(5) = 9.5e-47
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 772 LRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
+R D+ L KF+ RAVARI HGIASP YP+ ++ +
Sbjct: 1147 VRRDVHQLLSLRPEEKFSGRAVARIFHGIASPCYPAQVFGQ 1187
Score = 87 (35.7 bits), Expect = 9.5e-47, Sum P(5) = 9.5e-47
Identities = 36/118 (30%), Positives = 51/118 (43%)
Query: 559 GMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTT 618
G+ G +L +S D+KEE + TLL LEL +L+LLP C L +
Sbjct: 901 GLACRGHKRALPVQSTVLALDMKEEAIETLLCYLELHPRHWLELLPYTYAHCHLRCPGGS 960
Query: 619 PTL--LADKDKMVATILKK---SETKQGQYV--FDIPTVANSIGATTIDVSNQLLNLK 669
L L + +A K +T QG FD+ +A+S+G V L LK
Sbjct: 961 AQLQALVHRCPPLAACWAKWPPKDTSQGSSALEFDVVELADSMGWELASVRQALHQLK 1018
Score = 41 (19.5 bits), Expect = 9.5e-47, Sum P(5) = 9.5e-47
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 659 IDVSNQLLNLKMRGEITYELKDPA--YCYTIVEVPSDFCALSAHL 701
++ S +L RG++T E KD + Y+ V+ + AL AHL
Sbjct: 1035 VEFSELAFHLHSRGDLTDEEKDQICDFLYSRVQA-REHKAL-AHL 1077
Score = 38 (18.4 bits), Expect = 9.5e-47, Sum P(5) = 9.5e-47
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 133 GNFVRLNLNNN--KRKFANKGK 152
GN+VRLN+ R A++G+
Sbjct: 343 GNYVRLNMKTKCFVRVGASRGR 364
>TIGR_CMR|GSU_0898 [details] [associations]
symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
Uniprot:Q74ER2
Length = 603
Score = 482 (174.7 bits), Expect = 1.8e-45, P = 1.8e-45
Identities = 116/327 (35%), Positives = 176/327 (53%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR V+GY SFR Q E + V T +++PTG GKSLCYQIP+++ PG+ +V+ PL+
Sbjct: 8 VLRTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + +S+ E + + G + +L+V+PER + FL
Sbjct: 68 SLMKDQVDALRENGVAAACYNSTLGERESRRVLARLHGGELDLLYVAPERLMTDAFLERL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDV 370
I+L +DEAHCVS+W H+FRP Y+ V I A+ D+
Sbjct: 128 REIP-IALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPT-VPMI-ALTATADAQTRGDI 184
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
++ L + + + R N++ SV + ++ E F R + + +S
Sbjct: 185 VTRLGLRDAEMFVTGFDRPNIRYSVL------EKQKPFRQLEEFLATRPREAGIVYCLSR 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K E ++ L + +YH+G+ +RSR+QE F + IRVVVATVAFGMG+DK +
Sbjct: 239 KRVEE--VAEKLRAAGVEAGAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPN 296
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V V+HY LP+++E Y QE GRAGRDG
Sbjct: 297 VRFVVHYDLPKNIESYYQETGRAGRDG 323
>TIGR_CMR|CBU_0472 [details] [associations]
symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
Uniprot:Q83E59
Length = 601
Score = 478 (173.3 bits), Expect = 5.0e-45, P = 5.0e-45
Identities = 109/328 (33%), Positives = 181/328 (55%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR +GY++FR Q + I V+ + +++PTG GKSLCYQIPA++ G+ +VV PL+
Sbjct: 8 VLRQTFGYENFRPLQEKIINSVIAGEDNFVLMPTGGGKSLCYQIPALVREGVGIVVSPLI 67
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPE-EVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ++ L L +S E E + + + + +L+++PER + FLS
Sbjct: 68 SLMQDQVQALNANGAAAALYNSTLTEAEARKNLARLHNNELDLLYIAPERLMTESFLSRL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDV 370
L +LV +DEAHCVS+W H+FRP Y+ V I A+ +D+
Sbjct: 128 REVKL-ALVAIDEAHCVSQWGHDFRPEYLRLGELREYFP-KVPFI-ALTATADKQTRQDI 184
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK-HYYILQIS 429
+ L + +N+ + R N++ ++ E+ +++ +F + K + I+
Sbjct: 185 LQRLRLTKANVHIASFNRPNIRYTLL--------EKQKSYNQLVNFLKDRKADFGIVYCL 236
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
++ ++ ++ D S YH+G+PA R + QE F + + ++VAT+AFGMG+DK
Sbjct: 237 SRNRVEEVAAKLQADG-YSALPYHAGLPAAQRGKTQEAFQRDDVNIIVATIAFGMGIDKP 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDG 517
+V V+HY LP+ +E Y QE GRAGRDG
Sbjct: 296 NVRFVVHYDLPKHIEGYYQETGRAGRDG 323
>TAIR|locus:2074429 [details] [associations]
symbol:RECQI1 "RECQ helicase l1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0042631 "cellular response to water deprivation" evidence=IEP]
[GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
Length = 606
Score = 459 (166.6 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 113/338 (33%), Positives = 188/338 (55%)
Query: 195 LVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALM 254
+++G FR Q +A + +++K +++PTG GKSLCYQ+PA + G+T+V+ PL++L+
Sbjct: 200 VIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLI 259
Query: 255 IDQL--RHLPPVIHGGFLSSSQRPEEVAETIRLIQVG--AIKVLFVSPERFL-NADFLSI 309
DQ+ +L I FL+S Q + A ++ ++ + K+L+V+PE+ ++ FL
Sbjct: 260 QDQIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSFLET 319
Query: 310 FTATS---LISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXX 366
L++ VVDEAHCVS+W H+FRP Y V ++A+
Sbjct: 320 LRCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFP-RVP-VMALTATATESV 377
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+DV+ +L IP + +++ + R NL+ V + + + + F S Y L
Sbjct: 378 CQDVLKSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRD--RFKDQSGIVYCL 435
Query: 427 QISGKHFETDLISRYLCDNSISVKS--YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
S E ++++L + VK+ YH+G+PAK R +Q + + ++R+V AT+AFGM
Sbjct: 436 SKS----ECVDVAKFL-NEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGM 490
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
G+DK DV VIH +L +++E Y QE GRAGRDG + C
Sbjct: 491 GIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQC 528
Score = 38 (18.4 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 708 VENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYF 753
+ N + R +DR F +A+ ++ C L T C ++ +L+YF
Sbjct: 544 LRNGQGRNMDR-FKSAMAQAKKMQQY--CE--LKTECRRQMLLEYF 584
>UNIPROTKB|I3LFW3 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
Length = 432
Score = 472 (171.2 bits), Expect = 2.3e-44, P = 2.3e-44
Identities = 119/349 (34%), Positives = 191/349 (54%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
L+ V+G+DSF+ E+ M + K K + +PTGAGKSLCYQ+PA++ G+T+V+ PL
Sbjct: 16 LKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVISPL 75
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA--IKVLFVSPERFLNADF- 306
+AL+ DQ+ HL + IH L+S +E E + ++ K+L+++PE +A F
Sbjct: 76 IALIQDQVDHLLALKIHVCSLNSKLSAQERKELLSDLEQEKPRTKLLYITPEMAASASFQ 135
Query: 307 --LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXX 364
L A L+S +VVDEAHCVS+W H+FRP Y+ + C+ A+
Sbjct: 136 PTLKSLLARHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLA-HAPCV-ALTATATL 193
Query: 365 XXLRDVMSALEI--PLSNLIQ---KAQLRDNLQLSVSLS---GNNRQNERSAYVDEVFSF 416
DV +AL + P++ +A L ++Q LS GN R A +
Sbjct: 194 QVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLKALGQKA--- 250
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
+ I+ + + ++ L ++ K+YH+G+ A +R+ +Q + K+ V+
Sbjct: 251 DKGLSGCGIVYCRTRE-ACEQLAIELSARGVNAKAYHAGLKAAERTLVQNEWMEGKVPVI 309
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
VAT++FGMG+DK +V V H+++ +S+ Y QE GRAGRDGR S+C L+
Sbjct: 310 VATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGRPSWCRLY 358
>RGD|1311071 [details] [associations]
symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0015630 "microtubule cytoskeleton"
evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 471 (170.9 bits), Expect = 3.0e-44, P = 3.0e-44
Identities = 123/373 (32%), Positives = 191/373 (51%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR V+ FR QLE + + +K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 82 VLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV--AETIRLIQVGAIKVLFVSPERFLNAD-FL 307
+LM DQL L + I L+SS E V T + + +K+++V+PE+ + F+
Sbjct: 142 SLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKMFM 201
Query: 308 S----IFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXX 363
S + A L V VDE HC S+W H+FRP Y N+ ++ +
Sbjct: 202 SRLEKAYEAGRLTG-VAVDEVHCCSQWGHDFRPDYKALGILKRQFP-NIS-LIGLTATAT 258
Query: 364 XXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
L+D L + + R NL V ++ + + + + + K
Sbjct: 259 NHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAE-DFIENIANLINGRYKGKSG 317
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I S K E IS L + +YH+ + +DR+++ + +N+++VVVATVAFG
Sbjct: 318 IIYCFSQKDSEQVTIS--LQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFG 375
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK DV VIH+S+ +S+E Y QE GRAGRD + C L+ FR+ S++ + V
Sbjct: 376 MGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENV 435
Query: 544 DEYAINKFL--CQ 554
+ + + + CQ
Sbjct: 436 GQQKLYEMVSYCQ 448
>UNIPROTKB|Q6AYJ1 [details] [associations]
symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
"Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 471 (170.9 bits), Expect = 3.0e-44, P = 3.0e-44
Identities = 123/373 (32%), Positives = 191/373 (51%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR V+ FR QLE + + +K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 82 VLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV--AETIRLIQVGAIKVLFVSPERFLNAD-FL 307
+LM DQL L + I L+SS E V T + + +K+++V+PE+ + F+
Sbjct: 142 SLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKMFM 201
Query: 308 S----IFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXX 363
S + A L V VDE HC S+W H+FRP Y N+ ++ +
Sbjct: 202 SRLEKAYEAGRLTG-VAVDEVHCCSQWGHDFRPDYKALGILKRQFP-NIS-LIGLTATAT 258
Query: 364 XXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
L+D L + + R NL V ++ + + + + + K
Sbjct: 259 NHVLKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAE-DFIENIANLINGRYKGKSG 317
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I S K E IS L + +YH+ + +DR+++ + +N+++VVVATVAFG
Sbjct: 318 IIYCFSQKDSEQVTIS--LQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFG 375
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK DV VIH+S+ +S+E Y QE GRAGRD + C L+ FR+ S++ + V
Sbjct: 376 MGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMVVMENV 435
Query: 544 DEYAINKFL--CQ 554
+ + + + CQ
Sbjct: 436 GQQKLYEMVSYCQ 448
>CGD|CAL0004296 [details] [associations]
symbol:SGS1 species:5476 "Candida albicans" [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 498 (180.4 bits), Expect = 6.2e-44, Sum P(3) = 6.2e-44
Identities = 124/343 (36%), Positives = 186/343 (54%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVV 247
+L V+ SFR QLEA+ L K +++PTG GKSLCYQ+PA++ G T+V+
Sbjct: 456 ILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGATKGTTVVI 515
Query: 248 CPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ++HL I G SS ++ TI L + G + ++++SPER ++
Sbjct: 516 SPLISLMQDQVQHLLAKNIKAGMFSSKGGNDDNKHTIHLFREGFLDIVYLSPERANKSNA 575
Query: 307 L-SIFTA---TSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXX 362
+ +I T + ++ VV+DEAHC+S W H+FRP Y V I+A+
Sbjct: 576 MQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFP-KVP-IMALTATA 633
Query: 363 XXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
D++ L++ L++++ R NL + L +N E Y+ FS +S
Sbjct: 634 NEKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLKKSNCLLEIKDYILSRFS-GKSGII 692
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y + S +H L + Y + YH+G+ A R IQ+ + NKI+V+ AT+AF
Sbjct: 693 YCHSKQSCEHTSMKL-NEY----GLKTSFYHAGMSADKRFNIQKRWQENKIQVICATIAF 747
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
GMG+DK DV VIH LP +LE Y QE GRAGRDG S C ++
Sbjct: 748 GMGIDKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMY 790
Score = 42 (19.8 bits), Expect = 6.2e-44, Sum P(3) = 6.2e-44
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 75 IQKPSLRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPL 121
I+KP F D+S P P P I + K Q + S +PL
Sbjct: 28 IRKP---FPKDKSAPIPQVPDSIPSSDKENIPISKSQRKVQS-RLPL 70
Score = 37 (18.1 bits), Expect = 6.2e-44, Sum P(3) = 6.2e-44
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 742 TPCLQKNILDYF 753
T C +K +L YF
Sbjct: 832 TDCRRKQVLQYF 843
>UNIPROTKB|Q5A5R4 [details] [associations]
symbol:SGS1 "Putative uncharacterized protein SGS1"
species:237561 "Candida albicans SC5314" [GO:0001302 "replicative
cell aging" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0044182 "filamentous growth of a population of
unicellular organisms" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 498 (180.4 bits), Expect = 6.2e-44, Sum P(3) = 6.2e-44
Identities = 124/343 (36%), Positives = 186/343 (54%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVV 247
+L V+ SFR QLEA+ L K +++PTG GKSLCYQ+PA++ G T+V+
Sbjct: 456 ILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGATKGTTVVI 515
Query: 248 CPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ++HL I G SS ++ TI L + G + ++++SPER ++
Sbjct: 516 SPLISLMQDQVQHLLAKNIKAGMFSSKGGNDDNKHTIHLFREGFLDIVYLSPERANKSNA 575
Query: 307 L-SIFTA---TSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXX 362
+ +I T + ++ VV+DEAHC+S W H+FRP Y V I+A+
Sbjct: 576 MQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFP-KVP-IMALTATA 633
Query: 363 XXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
D++ L++ L++++ R NL + L +N E Y+ FS +S
Sbjct: 634 NEKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKLKKSNCLLEIKDYILSRFS-GKSGII 692
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y + S +H L + Y + YH+G+ A R IQ+ + NKI+V+ AT+AF
Sbjct: 693 YCHSKQSCEHTSMKL-NEY----GLKTSFYHAGMSADKRFNIQKRWQENKIQVICATIAF 747
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
GMG+DK DV VIH LP +LE Y QE GRAGRDG S C ++
Sbjct: 748 GMGIDKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMY 790
Score = 42 (19.8 bits), Expect = 6.2e-44, Sum P(3) = 6.2e-44
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 75 IQKPSLRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPL 121
I+KP F D+S P P P I + K Q + S +PL
Sbjct: 28 IRKP---FPKDKSAPIPQVPDSIPSSDKENIPISKSQRKVQS-RLPL 70
Score = 37 (18.1 bits), Expect = 6.2e-44, Sum P(3) = 6.2e-44
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 742 TPCLQKNILDYF 753
T C +K +L YF
Sbjct: 832 TDCRRKQVLQYF 843
>WB|WBGene00001865 [details] [associations]
symbol:him-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0051307 "meiotic chromosome separation" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
"chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
Uniprot:O18017
Length = 988
Score = 488 (176.8 bits), Expect = 1.2e-43, P = 1.2e-43
Identities = 124/356 (34%), Positives = 189/356 (53%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G++ FR Q + I L T +++PTGAGKSLCYQ+PA+ILPG+T+VV PL +
Sbjct: 239 LKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVSPLRS 298
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGA----IKVLFVSPERF-----LN 303
L+ DQ + + G ++ E I ++G+ IK+L+V+PE+ LN
Sbjct: 299 LIEDQKMKMKELGIGCEALTADLGAPAQEKI-YAELGSGNPSIKLLYVTPEKISASGRLN 357
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXX 363
+ F + L++ V+DEAHCVS+W H+FRP Y I+A+
Sbjct: 358 SVFFDLHRR-GLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATAT 416
Query: 364 XXXLRDVMSALEIPLSNLIQKAQLRDNLQLS-VSLSGNNRQNERSAYVDEVFSFHRSSKH 422
+ D L++ S L + +RDNL+ + + + N V+++ + K
Sbjct: 417 PKIVTDARDHLKMQNSKLFISSFVRDNLKYDLIPKAARSLIN----VVEKMKQLY-PGKS 471
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
+ +S K ET + L +S + YH+G+ R +Q + +NK V+ AT+AF
Sbjct: 472 GIVYCLSRKECET--VQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAF 529
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
GMG+DK DV VIHYSLP+S+E Y QE GRAGRDG SYC + RLR ++
Sbjct: 530 GMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMI 585
>DICTYBASE|DDB_G0292130 [details] [associations]
symbol:blm "Bloom syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
Uniprot:Q54DM3
Length = 1259
Score = 497 (180.0 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 117/339 (34%), Positives = 190/339 (56%)
Query: 194 RLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVAL 253
R ++G+ FR+ Q E I L+ T +++PTG GKSLCYQIPA+ GLT+V+ PL++L
Sbjct: 519 RSMFGFHVFRENQREIINSTLEGNDTFVLMPTGGGKSLCYQIPALYQKGLTIVISPLISL 578
Query: 254 MIDQLRHLPPVIH-GGFLSSSQRPEEVAETIRLIQVGA--IKVLFVSPERFLNADFLSIF 310
+ DQ+ L + + LSS+ + + + I+ + I++L+++PER + +D L
Sbjct: 579 INDQVEFLETLGYPAAALSSAVSSDAAIDVYKDIRSNSPKIRLLYLTPERVVKSDSLIEI 638
Query: 311 TAT----SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXX 366
A L S +V+DEAHCVS+W H+FRP Y V ILA+
Sbjct: 639 LANLDQKGLFSRIVIDEAHCVSQWGHDFRPDYKELSILRRKFP-KVP-ILALTATATERV 696
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
DV+ L + +++ R NL V ++ S ++ + +S Y I
Sbjct: 697 RNDVIYNLSMRNPVCFKQSFNRPNLIYQVLKKTKQVVDDMSKFIHSTYP-DKSGIVYCIS 755
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+ ++ + +++ L + IS YH+G+ +R+++Q + +I+V+VAT+AFGMG+
Sbjct: 756 K-----YDCENVAKRLRELKISAAHYHAGLENDERAKVQANWQKGRIKVIVATIAFGMGI 810
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+K DV VIH+S+P+SLE Y QE GRAGRDG +S+C L+
Sbjct: 811 NKADVRFVIHHSVPKSLEGYYQESGRAGRDGGISHCLLY 849
Score = 38 (18.4 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 139 NLNNNKRKFANKGKRNKSFRGKLSY 163
N NNN AN N F+G +
Sbjct: 486 NNNNNVFSVANFNGDNSRFKGNFPW 510
>UNIPROTKB|J3KTQ2 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
Ensembl:ENST00000578201 Uniprot:J3KTQ2
Length = 480
Score = 464 (168.4 bits), Expect = 1.8e-43, P = 1.8e-43
Identities = 118/351 (33%), Positives = 186/351 (52%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
L+ V+G+DSF+ E+ M + K K + +PTGAGKSLCYQ+PA++ G+T+VV PL
Sbjct: 20 LKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPL 79
Query: 251 VALMIDQLRHLPPV-IH----GGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+AL+ DQ+ HL + + LS+ +R E +A+ R + K+L+++PE ++
Sbjct: 80 IALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLER--EKPQTKILYITPEMAASSS 137
Query: 306 F---LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXX 362
F L+ + L+S +VVDEAHCVS+W H+FRP Y+ + C+ A+
Sbjct: 138 FQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLG-HAPCV-ALTATA 195
Query: 363 XXXXLRDVMSALEIPLSNLIQKAQ-LRDNLQLSVSLS-------GNNRQNERSAYVDEVF 414
DV +AL + I K R NL V GN + A E
Sbjct: 196 TPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEA- 254
Query: 415 SFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
+ I+ + L C ++ K+YH+G+ A +R+ +Q + K+
Sbjct: 255 --DKGLSGCGIVYCRTREACEQLAIELSC-RGVNAKAYHAGLKASERTLVQNDWMEEKVP 311
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V+VAT++FGMG+DK +V V H+++ +S+ Y QE GRAGRDG+ S+C L+
Sbjct: 312 VIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 362
>TAIR|locus:2127998 [details] [associations]
symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
"3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
Length = 713
Score = 480 (174.0 bits), Expect = 1.8e-43, P = 1.8e-43
Identities = 118/336 (35%), Positives = 189/336 (56%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E L +LLR +G+ FR QLEAI+ V+ + ++PTG GKS+CYQIPA+ PG+ LV
Sbjct: 22 EALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLV 81
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVG--AIKVLFVSPERFLN 303
V PL+ALM +Q+ L I +LSS+Q + + G ++++L+V+PE
Sbjct: 82 VSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIAT 141
Query: 304 ADF---LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXX 360
F L + L++L+ +DEAHC+S W H+FRPSY +V +LA+
Sbjct: 142 KGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLA-DVP-VLALTA 199
Query: 361 XXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS 420
+DV+ +L + +++ + R N+ V + N AY D + + +S
Sbjct: 200 TAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYK-DLLDN---AYTD-LGNLLKSC 254
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480
+ + + D +S +L IS +YH+G+ +K RS + + + S+K +++VATV
Sbjct: 255 GNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATV 314
Query: 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD 516
AFGMG+DK+DV V H+++P+S+E + QE GRAGRD
Sbjct: 315 AFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRD 350
>UNIPROTKB|F1NT69 [details] [associations]
symbol:F1NT69 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
ArrayExpress:F1NT69 Uniprot:F1NT69
Length = 451
Score = 456 (165.6 bits), Expect = 1.4e-42, P = 1.4e-42
Identities = 115/351 (32%), Positives = 189/351 (53%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKM--VLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ L V+G++SF+ E+ M V +K + +PTGAGKSLCYQ+PA++ G+T+V+
Sbjct: 23 KTLGKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVIS 82
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA----IKVLFVSPERFLN 303
PL+AL+ DQ+ HL + I L+S +E +TI L + + IK+L+++PE
Sbjct: 83 PLIALIQDQVDHLLALKIKACSLNSKLSAQE-KKTI-LADLASEKPQIKLLYITPEMAAA 140
Query: 304 ADF---LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXX 360
+ F L+ + +L+S +++DEAHCVS+W H+FRP Y+ N C+ A+
Sbjct: 141 SSFQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIP-NTPCV-ALTA 198
Query: 361 XXXXXXLRDVMSALEI--PLSNLIQKAQLRDNLQLSVSLSG--NNRQNERSAYVDEVFSF 416
D+++AL++ PL+ + R NL V + + +
Sbjct: 199 TATKQVQDDIVTALKLKQPLATF-KTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEV 257
Query: 417 HRSSKHYYILQISGKHFET--DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
++ Y I D ++ L + K+YH+G+ A DR+ +Q + KI
Sbjct: 258 KNTTGVYSGCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIP 317
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V+VAT++FGMG+DK +V V H+++ +S+ Y QE GRAGRDG+ S C L+
Sbjct: 318 VIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLY 368
>UNIPROTKB|A0JN36 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
Length = 649
Score = 465 (168.7 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 121/373 (32%), Positives = 189/373 (50%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+ FR QLE I + + K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 82 VLQNVFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA---IKVLFVSPERFLNAD-F 306
+LM DQL L + I L++S P+E + + V +K+++V+PE+ + F
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASS-PKEHVKWVHAEMVNKNSKLKLIYVTPEKIAKSKMF 200
Query: 307 LSIFTAT---SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXX 363
+S + + VDE HC S+W H+FRP Y N ++ +
Sbjct: 201 MSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP-NAS-LIGLTATAT 258
Query: 364 XXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
L+D L + + R NL V +N ++ V + ++
Sbjct: 259 SHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGI 318
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I S K E IS L I +YH+ + +D++++ + +N+I+VVVATVAFG
Sbjct: 319 -IYCFSQKDSEQVTIS--LQKLGIPAGAYHANMEPEDKTKVHRRWAANEIQVVVATVAFG 375
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK DV VIH+S+ +S+E Y QE GRAGRD + C L+ FR+ S++ + V
Sbjct: 376 MGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMENV 435
Query: 544 DEYAINKFL--CQ 554
+ + + + CQ
Sbjct: 436 GQQKLYEMVSYCQ 448
>DICTYBASE|DDB_G0272384 [details] [associations]
symbol:DDB_G0272384 "Bloom syndrome-like protein"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0272384 GO:GO:0005524
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:AAFI02000008 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 RefSeq:XP_645178.2 ProteinModelPortal:Q55A06
EnsemblProtists:DDB0233085 GeneID:8618350 KEGG:ddi:DDB_G0272384
OMA:YQQTGRA Uniprot:Q55A06
Length = 973
Score = 479 (173.7 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 113/355 (31%), Positives = 194/355 (54%)
Query: 194 RLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI-LPGLTLVVCPLVA 252
R ++G FR+ Q+EAI +L + T + LPTG GKSLC+QIP+++ G+T V+ PL+A
Sbjct: 471 RDIFGNKEFRNLQIEAINSILHDRDTFVSLPTGGGKSLCFQIPSIVDHRGVTFVISPLLA 530
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA---IKVLFVSPERFLNADFLS 308
LM DQ+ L + I ++SS E + + + G +K+++++PER ++FL
Sbjct: 531 LMQDQVHKLKSLGIPAESINSSGSQRENRDVLDQLLNGETCKLKLIYITPERLAQSEFLH 590
Query: 309 IFTAT---SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXX 365
+ + +VVDEAHC+SEW H+FRP Y +V I A
Sbjct: 591 LLDQLYDQGRLRRLVVDEAHCISEWGHSFRPKYRLISTFRDRFP-SVP-ISAFTASATPN 648
Query: 366 XLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF--HRSSKHY 423
D+ ++L++ I + LR NL V +Q++ + + ++++F +
Sbjct: 649 VEIDIKNSLKMVNPITINSSFLRPNLLYQV----RQKQSDEESLLKDIYNFISFKYPNST 704
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I+ + E ++++ YL + +S YH+ + RS++Q+ + + + ++V T+AFG
Sbjct: 705 GIIYCATVR-ECEIVADYLSERGLSSNFYHAKLSNTQRSKLQKDWTNGEFKIVCTTIAFG 763
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
MG+DK D VIH+S+P+S+E Y Q+ GRAGRDG+ S C LF + R + ++
Sbjct: 764 MGIDKGDTRFVIHHSMPQSMESYYQQTGRAGRDGKHSDCLLFYNKSDLMRFKHII 818
Score = 40 (19.1 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 71 SFTKIQKPSLRFENDQSLPTPSNPQGINEIKS---DAFAKKKKQI 112
S TK +K +++ ++D++ + E KS KKKK+I
Sbjct: 343 STTKSKKINVKKQDDENEEEEEDEDEEKEFKSIEISKLKKKKKEI 387
Score = 39 (18.8 bits), Expect = 4.9e-42, Sum P(2) = 4.9e-42
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 125 KLRKCNGEGNFVRLNLNNNKRKFANKGK 152
K K N N V N N+N N K
Sbjct: 66 KKNKNNSNNNNVEYNENDNSNNNNNNNK 93
>ZFIN|ZDB-GENE-070702-5 [details] [associations]
symbol:blm "Bloom syndrome" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
regulation of mitotic recombination" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
Length = 1420
Score = 475 (172.3 bits), Expect = 7.4e-42, Sum P(2) = 7.4e-42
Identities = 121/353 (34%), Positives = 191/353 (54%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G FR QLEAI L + T +++PTG GKSLCYQ+PA + G+T+V+ PL +L++D
Sbjct: 655 FGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIVD 714
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVG-AIKVLFVSPERFLNA----DFLSI 309
Q++ L + I LS ++ E A ++L + AIK+L+ +PE+ + L
Sbjct: 715 QVQKLTTLDICATSLSGDKKDSEAARIYMQLSRKDPAIKLLYATPEKVCASGRMISALQN 774
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
L++ +V+DEAHCVS+W H+FRP Y NV I+A+ +D
Sbjct: 775 LYERGLLARLVIDEAHCVSQWGHDFRPDYKRLHELRRMFP-NVP-IMALTATATPRVQKD 832
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+++ L + + + R+NL+ SV + +E + + + R S Y L +
Sbjct: 833 ILNQLAMTRPQVFTMSFNRNNLKYSVLPKKPKKVDEECIQWIKKY-YPRDSGIVYCLSRN 891
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK-IRVVVATVAFGMGLDK 488
+ D ++ L I+ +YH+G+ DR +Q + + +V+ AT+AFGMG+DK
Sbjct: 892 ----DCDTLADSLQRAGIAALAYHAGLSDSDREYVQNKWINQDGCQVMCATIAFGMGIDK 947
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541
DV VIH SLP+S+E Y QE GRAGRDG +S+C LF R++ L+ D
Sbjct: 948 PDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRLIAMD 1000
Score = 49 (22.3 bits), Expect = 7.4e-42, Sum P(2) = 7.4e-42
Identities = 27/108 (25%), Positives = 47/108 (43%)
Query: 49 NPSISAFKSLETLPAGFCFRLASFTKIQKPSLRFENDQSLP------TPSNPQG--INEI 100
N + + L+ P GFCF+ S + I K + + ++ P PS P+ +N +
Sbjct: 29 NAAQNKLSLLKPKPGGFCFKKKSSSGISKVEVPQKPERVAPKVNFFTAPSKPKTNTVNPL 88
Query: 101 KSDAFAKKKKQINLVSVDVPLPP-AKLRKCNGEGNFVRLNLNNNKRKF 147
++ FA K + + S LP A L K + V L + ++ F
Sbjct: 89 -ANPFALNKTPL-VQSTIKALPKSAALPKDSTNDQTVELKHDISQLSF 134
>UNIPROTKB|P46063 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
Length = 649
Score = 461 (167.3 bits), Expect = 9.3e-42, P = 9.3e-42
Identities = 122/374 (32%), Positives = 189/374 (50%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+ + FR QLE I + + K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 82 ILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPERFLNAD- 305
+LM DQL L + I L++S E V AE + + +K+++V+PE+ +
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVN--KNSELKLIYVTPEKIAKSKM 199
Query: 306 FLSIFTAT---SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXX 362
F+S + + VDE HC S+W H+FRP Y N ++ +
Sbjct: 200 FMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP-NAS-LIGLTATA 257
Query: 363 XXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
L D L I + R NL V +N ++ V + ++
Sbjct: 258 TNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSG 317
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
I S K E +S L + I +YH+ + +D++ + + +N+I+VVVATVAF
Sbjct: 318 I-IYCFSQKDSEQVTVS--LQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 374
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
GMG+DK DV VIH+S+ +S+E Y QE GRAGRD + C L+ FR+ S++ +
Sbjct: 375 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMEN 434
Query: 543 VDEYAINKFL--CQ 554
V + + + + CQ
Sbjct: 435 VGQQKLYEMVSYCQ 448
>RGD|1310823 [details] [associations]
symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
Length = 973
Score = 471 (170.9 bits), Expect = 1.0e-41, P = 1.0e-41
Identities = 117/349 (33%), Positives = 197/349 (56%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
L+ V+G+DSF+ E+ M + K K + +PTGAGKSLCYQ+PA++ G+T+VV PL
Sbjct: 20 LKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAVLAKGITIVVSPL 79
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA--IKVLFVSPERFLNADF- 306
+AL+ DQ+ HL + + L+S +E E + ++ K+L+++PE +A F
Sbjct: 80 IALIQDQVDHLLALKVQVSSLNSKLSVQERKELLSDLERDKPRTKLLYITPEMAASASFQ 139
Query: 307 --LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXX 364
L+ + +L+S +VVDEAHCVS+W H+FRP Y+ + C+ A+
Sbjct: 140 PTLNSLLSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLA-HAPCV-ALTATATP 197
Query: 365 XXLRDVMSALEI--PLSNLIQ---KAQLRDNLQ---LSVSLSGNNRQNERSAYVDEVFSF 416
DV +AL + P+++ +A L ++Q L + GN R A + +
Sbjct: 198 QVQEDVFAALHLKQPVASFKTPCFRANLFYDVQFKELIPDVYGNLRDFCLKALGQK--AD 255
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
+ SS I+ + + ++ L ++ K+YH+G+ A +R+++Q + K+ V+
Sbjct: 256 NGSSSGCGIVYCRTRE-ACEQLAIELSSRGVNAKAYHAGLKASERTQVQNEWMEEKVPVI 314
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
VAT++FGMG+DK +V V H+++ +S+ Y QE GRAGRDG+ S+C L+
Sbjct: 315 VATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 363
>UNIPROTKB|Q9DEY9 [details] [associations]
symbol:blm "Bloom syndrome protein homolog" species:8355
"Xenopus laevis" [GO:0000729 "DNA double-strand break processing"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOVERGEN:HBG004850 GO:GO:0000729
CTD:641 EMBL:AF307841 RefSeq:NP_001079095.1 UniGene:Xl.706
ProteinModelPortal:Q9DEY9 GeneID:373628 KEGG:xla:373628
Xenbase:XB-GENE-982565 Uniprot:Q9DEY9
Length = 1364
Score = 473 (171.6 bits), Expect = 1.3e-41, P = 1.3e-41
Identities = 123/359 (34%), Positives = 196/359 (54%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G FR QLEAI L + +++PTG GKSLCYQ+P I PG+T+V+ PL +L++D
Sbjct: 615 FGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGVTIVISPLRSLIVD 674
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVGAI-KVLFVSPERFLNADFLSIFTAT 313
Q++ L + I +L+ + E A ++L + I K+L+V+PE+ + L I T
Sbjct: 675 QVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEKVCASTRL-ISTME 733
Query: 314 SL-----ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
+L ++ V+DEAHCVS+W H+FRP Y +V ++A+ +
Sbjct: 734 NLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQ-SVP-MMALTATANPRVKK 791
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY--VDEVFSFHRSSKHYYIL 426
D+++ L++ + + RDNL+ V ++ +R A V+ + H + I+
Sbjct: 792 DILNQLKMTKPQIFTMSFNRDNLKYEVL----PKKPKRVALDCVEWIKKHHPNDSG--II 845
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS-NKIRVVVATVAFGMG 485
+H E D ++ L ++ +YH+G+ +R +Q + + + +V+ AT+AFGMG
Sbjct: 846 YCLSRH-ECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAFGMG 904
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRSLMYSDG 542
+DK DV VIH SLP+S+E Y QE GRAGRDG S+C LF D+T R M DG
Sbjct: 905 IDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEKDG 963
>UNIPROTKB|F1PNP1 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
KEGG:cfa:486641 Uniprot:F1PNP1
Length = 646
Score = 459 (166.6 bits), Expect = 1.5e-41, P = 1.5e-41
Identities = 119/374 (31%), Positives = 187/374 (50%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ ++ FR QLE I + + K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 82 VLQNIFKLQRFRLLQLETINVTMSGKDVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPERFLNAD- 305
+LM DQL L + I L++S E V AE I + +K+++V+PE+ +
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMIN--KNSKLKLIYVTPEKIAKSKM 199
Query: 306 FLSIFTAT---SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXX 362
F+S + + VDE HC S W H+FRP Y ++ +
Sbjct: 200 FMSRLEKAYEARRFTRIAVDEVHCCSHWGHDFRPDYKALGILKRQFPNTA--LMGLTATA 257
Query: 363 XXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
L+D L + + R NL + +N ++ V + ++
Sbjct: 258 TSHVLKDAQKILCVGKCFTFTASFNRPNLYYEIRQKPSNTEDVIEDIVKLINGRYKGQSG 317
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
I S K E +S L I +YH+ + +D++R+ + +N+I+VVVATVAF
Sbjct: 318 I-IYCFSQKDSEQVTVS--LQKLGIQAGAYHANMEPEDKTRVHRRWSANEIQVVVATVAF 374
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
GMG+DK DV +IH+S+ +S+E Y QE GRAGRD + C L+ FR+ S++ +
Sbjct: 375 GMGIDKPDVRFIIHHSMSKSIENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVMEN 434
Query: 543 VDEYAINKFL--CQ 554
V + + + + CQ
Sbjct: 435 VGQQKLYEMVSYCQ 448
>MGI|MGI:103021 [details] [associations]
symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
Length = 648
Score = 459 (166.6 bits), Expect = 1.6e-41, P = 1.6e-41
Identities = 123/375 (32%), Positives = 192/375 (51%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+ FR QLE I + + +K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 82 VLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPERFLNAD- 305
+LM DQL L + I L++S E V AE + + +K+++V+PE+ +
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVN--KNSQLKLIYVTPEKIAKSKM 199
Query: 306 FLS----IFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXX 361
F+S + A L VDE HC S+W H+FRP Y N ++ +
Sbjct: 200 FMSRLEKAYEAGRLTG-AAVDEVHCCSQWGHDFRPDYKALGILKRQFP-NAS-LMGLTAT 256
Query: 362 XXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
L+DV L + + R NL V ++ ++ V + ++
Sbjct: 257 ATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGRYKGQS 316
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I S K E IS L I +YH+ + +D++++ + +N+++VVVATVA
Sbjct: 317 GI-IYCFSQKDSEQITIS--LQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVATVA 373
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541
FGMG+DK DV VIH+S+ +S+E Y QE GRAGRD + C L+ FR+ S++ +
Sbjct: 374 FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIFRISSMVVME 433
Query: 542 GVDEYAINKFL--CQ 554
V + + + + CQ
Sbjct: 434 NVGQQKLYEMVSYCQ 448
>UNIPROTKB|F1ND40 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=IEA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
ArrayExpress:F1ND40 Uniprot:F1ND40
Length = 1142
Score = 470 (170.5 bits), Expect = 1.9e-41, P = 1.9e-41
Identities = 121/366 (33%), Positives = 198/366 (54%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E + ++ +G SFR QLEAI L + +++PTG GKSLCYQ+PA + G+T+V
Sbjct: 383 EEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVV 442
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVGAI-KVLFVSPERFLN 303
+ PL +L+IDQ++ L + I +L+ + ++T ++L + I K+L+V+PE+
Sbjct: 443 ISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCA 502
Query: 304 AD-FLSIFTAT---SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMX 359
++ LS L++ V+DEAHCVS+W H+FR Y +V ++A+
Sbjct: 503 SNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFH-SVP-MMALT 560
Query: 360 XXXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
+D+ + LE+ + + R NL+ V L ++ ++ + +H
Sbjct: 561 ATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDV-LPKKPKKVAMDC-LEWIKKYHPH 618
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK-IRVVVA 478
I+ +H E D + L ++ +YH+G+ +R +Q+ + + + +V+ A
Sbjct: 619 DSG--IIYCLSRH-ECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICA 675
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRS 536
T+AFGMG+DK DV VIH SLP+S+E Y QE GRAGRDG +S+C LF D+T R
Sbjct: 676 TIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLI 735
Query: 537 LMYSDG 542
LM DG
Sbjct: 736 LMEKDG 741
>POMBASE|SPAC2G11.12 [details] [associations]
symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
"Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0000725
"recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IDA] [GO:0034065 "replication fork processing at rDNA
locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
recombination intermediates" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
GO:GO:0071140 Uniprot:Q09811
Length = 1328
Score = 466 (169.1 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 125/370 (33%), Positives = 190/370 (51%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPG 242
E LG L+ + FR QLEAI L K +++PTG GKSLCYQ+PA+I G
Sbjct: 506 EVLG-CLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRG 564
Query: 243 LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVG--AIKVLFVSPE 299
+TLV+ PL++LM DQL HL + I LS Q +E + I + +K+L+V+PE
Sbjct: 565 VTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPE 624
Query: 300 RFL-NADFLSIFTAT---SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECI 355
N + + L++ +V+DEAHCVS W H+FRP Y +
Sbjct: 625 GLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQ-GIP-F 682
Query: 356 LAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFS 415
+A+ +D+++ L + ++ + R NL + + E ++
Sbjct: 683 MALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPK-KDLYTELYRFISNGH- 740
Query: 416 FHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
H S Y + + S + L + Y + YH+G+ +R RIQ + S ++
Sbjct: 741 LHESGIIYCLSRTSCEQVAAKLRNDY----GLKAWHYHAGLEKVERQRIQNEWQSGSYKI 796
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL---DDITYF 532
+VAT+AFGMG+DK DV VIH+S P+SLE Y QE GRAGRDG+ ++C +F D +T+
Sbjct: 797 IVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQ 856
Query: 533 RLRSLMYSDG 542
+L +M DG
Sbjct: 857 KL--IMSGDG 864
Score = 54 (24.1 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 25/96 (26%), Positives = 39/96 (40%)
Query: 71 SFTKIQKPSLRFENDQSLPTPSNPQGINEIKSDAFAKKKKQI--------NLVSVDVPLP 122
S KI PS RF D + + +++ S + K I VS+++P+
Sbjct: 153 SLNKIHDPS-RFIKDNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIEIPIK 211
Query: 123 PAKLRKCNGEGNFVRLNLNNNKRKFANKG--KRNKS 156
P +L + F RLN NN N KR+ +
Sbjct: 212 PKEL---SNNLPFPRLNNNNTNNNNDNNAIEKRDSA 244
>ASPGD|ASPL0000045206 [details] [associations]
symbol:musN species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
Uniprot:G5EB35
Length = 1534
Score = 472 (171.2 bits), Expect = 2.1e-41, P = 2.1e-41
Identities = 125/351 (35%), Positives = 189/351 (53%)
Query: 202 FRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLVALMIDQ 257
FR QLEAI L K T +++PTG GKSLCYQ+P++I G +TLV+ PL++LM DQ
Sbjct: 701 FRPNQLEAIDSTLSGKDTFVLMPTGGGKSLCYQLPSVISSGSTRGVTLVISPLLSLMQDQ 760
Query: 258 LRHLPPVIHGGFLSSSQRPEE----VAETIRLIQVGA-IKVLFVSPERFLNADFLS--IF 310
+ HL +L + P E + T+ I++L+++PE + L+ I
Sbjct: 761 VSHLRQNKIKAYLINGDTPSEERQWIMSTLSSHNPETHIELLYITPEMISKSHALTDRIE 820
Query: 311 TATSLISL--VVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
S+ L VV+DEAHCVS+W H+FRP Y V ++A+
Sbjct: 821 KLCSIQKLARVVIDEAHCVSQWGHDFRPDYKQIGAFRARIP-GVP-LMALTATATENVKV 878
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
DV+ L + + ++ R NL V G + + S D + S +R+ K + +
Sbjct: 879 DVIHNLRMQGCEVFTQSFNRPNLTYEVRRKGKHAELLDSI-ADTIKSTYRN-KCGIVYCL 936
Query: 429 SGKHFETDLISRYLCDN-SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S E ++ L N SI + YH+G+ A+ R+R Q+ + + + V+VAT+AFGMG+D
Sbjct: 937 SRNTCEK--VAEALRTNYSIKAEHYHAGLDAETRARTQQRWQAGDVHVIVATIAFGMGID 994
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
K DV VIH+S+P+SLE Y QE GRAGRDGR S C+L+ ++S++
Sbjct: 995 KPDVRFVIHHSIPKSLEGYYQETGRAGRDGRRSGCYLYFSHRDVSTMQSMI 1045
>UNIPROTKB|F1SR01 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
Uniprot:F1SR01
Length = 649
Score = 458 (166.3 bits), Expect = 2.3e-41, P = 2.3e-41
Identities = 119/374 (31%), Positives = 188/374 (50%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ ++ FR QLE I + + K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 82 VLQNIFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPERFLNAD- 305
+LM DQL L + I L++S E V AE + + +K+++V+PE+ +
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVN--KNSKLKLIYVTPEKIAKSKM 199
Query: 306 FLSIFTAT---SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXX 362
F+S + + +DE HC S+W H+FRP Y N ++ +
Sbjct: 200 FMSRLEKAYEARRFTRIAIDEVHCCSQWGHDFRPDYKALGILKRQFP-NTS-LIGLTATA 257
Query: 363 XXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
L+D L + + R NL V +N ++ V + ++
Sbjct: 258 TSHVLKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSG 317
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
I S K E +S L I +YH+ + +D++ + + +N+I+VVVATVAF
Sbjct: 318 I-IYCFSQKDSEQVTVS--LQKLGIHAGAYHANMEPEDKTTVHRRWSANEIQVVVATVAF 374
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
GMG+DK DV VIH+S+ +S+E Y QE GRAGRD + C L+ FR+ S++ +
Sbjct: 375 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDTKADCILYYGFGDIFRISSMVVMEN 434
Query: 543 VDEYAINKFL--CQ 554
V + + + + CQ
Sbjct: 435 VGQQKLYEMVSYCQ 448
>UNIPROTKB|F1P3V1 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
"regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0051259 "protein
oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
Length = 1380
Score = 470 (170.5 bits), Expect = 2.9e-41, P = 2.9e-41
Identities = 121/366 (33%), Positives = 198/366 (54%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E + ++ +G SFR QLEAI L + +++PTG GKSLCYQ+PA + G+T+V
Sbjct: 621 EEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVV 680
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVGAI-KVLFVSPERFLN 303
+ PL +L+IDQ++ L + I +L+ + ++T ++L + I K+L+V+PE+
Sbjct: 681 ISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCA 740
Query: 304 AD-FLSIFTAT---SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMX 359
++ LS L++ V+DEAHCVS+W H+FR Y +V ++A+
Sbjct: 741 SNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFH-SVP-MMALT 798
Query: 360 XXXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
+D+ + LE+ + + R NL+ V L ++ ++ + +H
Sbjct: 799 ATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDV-LPKKPKKVAMDC-LEWIKKYHPH 856
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK-IRVVVA 478
I+ +H E D + L ++ +YH+G+ +R +Q+ + + + +V+ A
Sbjct: 857 DSG--IIYCLSRH-ECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICA 913
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRS 536
T+AFGMG+DK DV VIH SLP+S+E Y QE GRAGRDG +S+C LF D+T R
Sbjct: 914 TIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLI 973
Query: 537 LMYSDG 542
LM DG
Sbjct: 974 LMEKDG 979
>UNIPROTKB|F1NPI7 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
Length = 661
Score = 458 (166.3 bits), Expect = 3.3e-41, P = 3.3e-41
Identities = 119/368 (32%), Positives = 185/368 (50%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E + L+ + FR QLE + + K LV+PTG GKSLCYQ+PA+ G TLV
Sbjct: 77 EKIKTALQNKFKLPKFRSLQLETVNATMAGKDIFLVMPTGGGKSLCYQLPAVCSDGFTLV 136
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEV--AETIRLIQVGAIKVLFVSPERFLN 303
+CPL++LM DQL L + I L++S E V L + +K+L+V+PE+
Sbjct: 137 ICPLISLMEDQLMVLDQLGISATLLNASSSKEHVKWVHAQMLDRNSQLKLLYVTPEKIAK 196
Query: 304 AD-FLSIFTAT---SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVEC--ILA 357
+ F+S ++ + VDE HC S+W H+FRP Y C ++
Sbjct: 197 SKMFMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYKSLGILKR----QFPCAPLIG 252
Query: 358 MXXXXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH 417
+ L+D + L I + R NL V +N ++ V + +
Sbjct: 253 LTATATNHVLKDAQNILHIQKCITFTASFNRPNLYYEVRHKPSNNEDFIEDIVKLINGRY 312
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
+ + S K E +S L I +YH+ + AK ++++ + + +N+I+VVV
Sbjct: 313 KGLSGI-VYCFSQKDSEQVTVS--LQKLGIKAGTYHANMDAKYKTKVHKGWAANQIQVVV 369
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
ATVAFGMG+DK DV VIH+S+ +S+E Y QE GRAGRD + + C L+ FR+ S+
Sbjct: 370 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDQKADCILYYGFGDIFRISSM 429
Query: 538 MYSDGVDE 545
+ + V +
Sbjct: 430 VVMENVGQ 437
>TAIR|locus:2197394 [details] [associations]
symbol:RECQ4A species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0006310 "DNA
recombination" evidence=IEA;IMP] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0070417 "cellular
response to cold" evidence=IEP] [GO:0071215 "cellular response to
abscisic acid stimulus" evidence=IEP] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IGI;RCA;IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IGI;IMP] [GO:0043138
"3'-5' DNA helicase activity" evidence=IMP;IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
Prosite:PS00018 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009506 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0000724 EMBL:U95973 GO:GO:0071215 GO:GO:0070417 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043138 HSSP:P15043 EMBL:AJ404473
EMBL:AY120761 EMBL:BT010133 IPI:IPI00538289 PIR:B86243
RefSeq:NP_172562.2 UniGene:At.10177 ProteinModelPortal:Q8L840
SMR:Q8L840 STRING:Q8L840 PaxDb:Q8L840 PRIDE:Q8L840
EnsemblPlants:AT1G10930.1 GeneID:837636 KEGG:ath:AT1G10930
TAIR:At1g10930 HOGENOM:HOG000148634 InParanoid:Q8L840 OMA:QLPALIC
PhylomeDB:Q8L840 ProtClustDB:PLN03137 Genevestigator:Q8L840
Uniprot:Q8L840
Length = 1188
Score = 468 (169.8 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 120/360 (33%), Positives = 187/360 (51%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMI 255
V+G SFR Q E I + +++PTG GKSL YQ+PA+I G+TLV+ PLV+L+
Sbjct: 448 VFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQ 507
Query: 256 DQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQV-----GAIKVLFVSPERFLNAD---- 305
DQ+ +L I LS+ E AE +++ Q K+L+V+PE+ +D
Sbjct: 508 DQIMNLLQANIPAASLSAGM---EWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLR 564
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXX 365
L + L++ V+DEAHCVS+W H+FRP Y N+ +LA+
Sbjct: 565 HLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFP-NIP-VLALTATATAS 622
Query: 366 XLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
DV+ AL + + +++ R NL SV + ++ E F Y +
Sbjct: 623 VKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENH-FDECGIIYCL 681
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
++ + + +S L + YH + + R+ IQ + ++I ++ ATVAFGMG
Sbjct: 682 SRM-----DCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMG 736
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
++K DV VIH+SLP+S+E Y QE GRAGRDG+ S C L+ Y R++ ++ GVD+
Sbjct: 737 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQ 796
>TAIR|locus:2197555 [details] [associations]
symbol:RECQL2 "RECQ helicase L2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
Genevestigator:Q9FT73 Uniprot:Q9FT73
Length = 705
Score = 459 (166.6 bits), Expect = 5.2e-41, P = 5.2e-41
Identities = 125/372 (33%), Positives = 192/372 (51%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMI 255
V+G +R Q E I ++ + ++++ G GKSLCYQ+PAM+ G TLVV PL++L+
Sbjct: 84 VFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQ 143
Query: 256 DQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA--IKVLFVSPERFLNAD-FLSIFT 311
DQ+ L + I L+S+ E + ++ G +K+L+V+PE+ + F+S
Sbjct: 144 DQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSKRFMSKLE 203
Query: 312 A---TSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
+SL+ +DEAHC S+W H+FRP Y V + A+
Sbjct: 204 KCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFP-KVPMV-ALTATATQKVQN 261
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSV---SLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D++ L IP + R NL SV S G +E + ++ E +S + S Y
Sbjct: 262 DLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNESGIVYCF 321
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
S K E + I+ L + IS YH+ + A R ++ + NK++V+V TVAFGMG
Sbjct: 322 ---SRK--ECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMG 376
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD--GV 543
++K DV VIH+SL +S+E Y QE GRAGRDG S C LF R S+++ + G+
Sbjct: 377 INKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSSMVFYEYSGL 436
Query: 544 DE-YAINKFLCQ 554
Y I ++ CQ
Sbjct: 437 QNLYDIVRY-CQ 447
>UNIPROTKB|O94762 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
Ensembl:ENST00000317905 Ensembl:ENST00000340830
Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
Length = 991
Score = 464 (168.4 bits), Expect = 6.5e-41, P = 6.5e-41
Identities = 118/351 (33%), Positives = 186/351 (52%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
L+ V+G+DSF+ E+ M + K K + +PTGAGKSLCYQ+PA++ G+T+VV PL
Sbjct: 20 LKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPL 79
Query: 251 VALMIDQLRHLPPV-IH----GGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+AL+ DQ+ HL + + LS+ +R E +A+ R + K+L+++PE ++
Sbjct: 80 IALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLER--EKPQTKILYITPEMAASSS 137
Query: 306 F---LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXX 362
F L+ + L+S +VVDEAHCVS+W H+FRP Y+ + C+ A+
Sbjct: 138 FQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLG-HAPCV-ALTATA 195
Query: 363 XXXXLRDVMSALEIPLSNLIQKAQ-LRDNLQLSVSLS-------GNNRQNERSAYVDEVF 414
DV +AL + I K R NL V GN + A E
Sbjct: 196 TPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEA- 254
Query: 415 SFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
+ I+ + L C ++ K+YH+G+ A +R+ +Q + K+
Sbjct: 255 --DKGLSGCGIVYCRTREACEQLAIELSC-RGVNAKAYHAGLKASERTLVQNDWMEEKVP 311
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V+VAT++FGMG+DK +V V H+++ +S+ Y QE GRAGRDG+ S+C L+
Sbjct: 312 VIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 362
>SGD|S000004802 [details] [associations]
symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
DNA double-strand break processing" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010520
"regulation of reciprocal meiotic recombination" evidence=IGI]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IGI] [GO:0000729 "DNA double-strand break processing"
evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
Length = 1447
Score = 477 (173.0 bits), Expect = 6.5e-41, Sum P(2) = 6.5e-41
Identities = 126/361 (34%), Positives = 184/361 (50%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG--- 242
DE L RL V+ FR QLEA+ L K +++PTG GKSLCYQ+PA++ G
Sbjct: 664 DEVLYRLHE-VFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTH 722
Query: 243 -LTLVVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPER 300
T+V+ PL++LM DQ+ HL I SS E+ +T L G + ++++SPE
Sbjct: 723 GTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLVYISPEM 782
Query: 301 FLNAD----FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECIL 356
++ +S A ++ +VVDEAHCVS W H+FRP Y ++ I
Sbjct: 783 ISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYP-DIPMI- 840
Query: 357 AMXXXXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF 416
A+ D++ LE+ ++++ R NL V+ N E D V S
Sbjct: 841 ALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKTKNTIFE---ICDAVKS- 896
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
R I+ K + S + N I YH+G+ +R +Q+ + +++I+V+
Sbjct: 897 -RFKNQTGIIYCHSKK-SCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVI 954
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
ATVAFGMG+DK DV V H+++P +LE Y QE GRAGRDG SYC ITYF R
Sbjct: 955 CATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYC------ITYFSFRD 1008
Query: 537 L 537
+
Sbjct: 1009 I 1009
Score = 38 (18.4 bits), Expect = 6.5e-41, Sum P(2) = 6.5e-41
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 742 TPCLQKNILDYFRGD 756
T C +K +L YF D
Sbjct: 1045 TDCRRKLVLSYFNED 1059
>UNIPROTKB|Q9I920 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
Length = 1142
Score = 464 (168.4 bits), Expect = 9.2e-41, P = 9.2e-41
Identities = 120/366 (32%), Positives = 197/366 (53%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E + ++ +G SFR QLEAI L + +++PTG GKSLCYQ+PA + G+T+V
Sbjct: 383 EEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVV 442
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVGAI-KVLFVSPERFLN 303
+ PL +L+IDQ++ L + I +L+ + ++T ++L + I K+L+V+PE+
Sbjct: 443 ISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCA 502
Query: 304 AD-FLSIFTAT---SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMX 359
++ LS L++ V+DEAHCVS+W H+FR Y +V ++A+
Sbjct: 503 SNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFH-SVP-MMALT 560
Query: 360 XXXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
+D+ + LE+ + + R NL+ V L ++ ++ + +H
Sbjct: 561 ATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDV-LPKKPKKVAMDC-LEWIKKYHPH 618
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK-IRVVVA 478
I+ +H E D + L ++ +YH+G+ +R +Q+ + + + +V+ A
Sbjct: 619 DSG--IIYCLSRH-ECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICA 675
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRS 536
T+AFGMG+DK DV VIH SLP+S+E Y E GRAGRDG +S+C LF D+T R
Sbjct: 676 TIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRLI 735
Query: 537 LMYSDG 542
LM DG
Sbjct: 736 LMEKDG 741
>TIGR_CMR|BA_1505 [details] [associations]
symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
Length = 509
Score = 438 (159.2 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 108/339 (31%), Positives = 179/339 (52%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY FR GQ I +L+ K + +LPTG GKS+CYQ P ++ G LVV PL++LM D
Sbjct: 11 FGYSEFRPGQKGVITDLLEGKDVIAMLPTGRGKSMCYQFPGLMREGTVLVVSPLLSLMED 70
Query: 257 QLRHLPPVIHGGFLS-SSQRP-EEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS 314
Q+ L V+ ++ +S R E E ++ ++ + K +FVSPE L ++ L
Sbjct: 71 QVTQLKYVVKDRVIAFNSFRTLNEKREAMK--KLSSYKFIFVSPE-MLQSELLIRELKKI 127
Query: 315 LISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVMSAL 374
ISL VVDEAHC+S+W ++FRP Y +LA+ L+D+ +L
Sbjct: 128 HISLFVVDEAHCISQWGYDFRPDYKKLNVVIENIGSPT--VLALTATATKGVLQDIADSL 185
Query: 375 EIP-LSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHF 433
+ + + R N+ + V + ++ A +++V I+ S + +
Sbjct: 186 NLKGAAEHVYSID-RPNIAMDVQFV-ETIEEKKEALLEQVMYLQGPG----IVYCSSRAW 239
Query: 434 ETDLISRYLCDNSIS-VKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVG 492
T+ ++ YL ++ V YH G+ ++R IQ+ F +N++++V+ T AFGMG++K +
Sbjct: 240 -TERLTEYLRGKGVTGVAFYHGGMEHEERMLIQQQFMNNQLQLVICTSAFGMGVNKANTR 298
Query: 493 AVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531
+IH+ P ++ Y+QEIGRAGRDG S L + +
Sbjct: 299 YIIHFHYPTNIASYLQEIGRAGRDGEPSIAILLCSPLDH 337
>UNIPROTKB|E1BQ04 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051259 "protein oligomerization" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IEA]
[GO:0046632 "alpha-beta T cell differentiation" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 OMA:NANDQAI GO:GO:0000800
GO:GO:0045120 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0051782 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
GO:GO:0031297 EMBL:DAAA02052171 IPI:IPI01003766
Ensembl:ENSBTAT00000027057 Uniprot:E1BQ04
Length = 1417
Score = 470 (170.5 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 122/359 (33%), Positives = 198/359 (55%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G +FR QLEAI L + +++PTG GKSLCYQ+PA + PG+T+V+ PL +L++D
Sbjct: 663 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVD 722
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVGAI-KVLFVSPERFLNADFLSIFTAT 313
Q++ L + I +L+ + E ++L + I K+L+V+PE+ ++ L I T
Sbjct: 723 QVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRL-ISTLE 781
Query: 314 SL-----ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
+L ++ V+DEAHCVS+W H+FRP Y +V ++A+ +
Sbjct: 782 NLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFP-SVP-VMALTATANPRVQK 839
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVD--EVFSFHRSSKHYYIL 426
D+++ L+I + + R NL+ V ++ ++ A+ D E H I
Sbjct: 840 DILTQLKILRPQVFSMSFNRHNLKYYVL----PKKPKKVAF-DCLEWIRKHHPHDSGIIY 894
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK-IRVVVATVAFGMG 485
+S + E D ++ L ++ ++ +YH+G+ R +Q + + +V+ AT+AFGMG
Sbjct: 895 CLSRR--ECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMG 952
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRSLMYSDG 542
+DK DV VIH SLP+S+E Y QE GRAGRDG +S+C LF D+T + LM DG
Sbjct: 953 IDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEKDG 1011
Score = 41 (19.5 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 92 SNPQGINEIKSDAFAKKKK--QINLVSV 117
+N G+++ KS F KKK N VSV
Sbjct: 22 NNKLGLSKPKSSGFTFKKKVPSANNVSV 49
>UNIPROTKB|E2RS76 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051880 "G-quadruplex DNA binding"
evidence=IEA] [GO:0051782 "negative regulation of cell division"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051098 "regulation of binding" evidence=IEA] [GO:0046641
"positive regulation of alpha-beta T cell proliferation"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045120
"pronucleus" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010165 "response to
X-ray" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005657 "replication
fork" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0002039
"p53 binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AAEX03002333 Ensembl:ENSCAFT00000019677 Uniprot:E2RS76
Length = 1407
Score = 461 (167.3 bits), Expect = 3.0e-40, P = 3.0e-40
Identities = 119/359 (33%), Positives = 195/359 (54%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G +FR QLEAI L + +++PTG GKSLCYQ+PA + PG+T+V+ PL +L++D
Sbjct: 652 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVD 711
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVGAI-KVLFVSPERFLNAD-FLSIFT- 311
Q++ L + I +L+ + E ++L + I K+L+V+PE+ ++ LS
Sbjct: 712 QVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLLSTLEN 771
Query: 312 --ATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
L++ V+DEAHCVS+W H+FR Y +V ++A+ +D
Sbjct: 772 LYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFP-SVP-VMALTATANPRVQKD 829
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY--VDEVFSFH-RSSKHYYIL 426
+++ L+I + + R NL+ V ++ ++ A+ ++ + +H S Y L
Sbjct: 830 ILTQLKILQPQVFSMSFNRHNLKYYVL----PKKPKKVAFDCLEWIRKYHPHDSGIIYCL 885
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK-IRVVVATVAFGMG 485
E D ++ L + ++ +YH+G+ R +Q + + +V+ AT+AFGMG
Sbjct: 886 S----RRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMG 941
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRSLMYSDG 542
+DK DV VIH SLP+S+E Y QE GRAGRDG +S+C LF D+T + LM DG
Sbjct: 942 IDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKDG 1000
>UNIPROTKB|J9PB86 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 CTD:641 OMA:NANDQAI
EMBL:AAEX03002333 RefSeq:XP_003434427.1 Ensembl:ENSCAFT00000042800
GeneID:100685609 KEGG:cfa:100685609 Uniprot:J9PB86
Length = 1420
Score = 461 (167.3 bits), Expect = 3.1e-40, P = 3.1e-40
Identities = 119/359 (33%), Positives = 195/359 (54%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G +FR QLEAI L + +++PTG GKSLCYQ+PA + PG+T+V+ PL +L++D
Sbjct: 665 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVD 724
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVGAI-KVLFVSPERFLNAD-FLSIFT- 311
Q++ L + I +L+ + E ++L + I K+L+V+PE+ ++ LS
Sbjct: 725 QVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRLLSTLEN 784
Query: 312 --ATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
L++ V+DEAHCVS+W H+FR Y +V ++A+ +D
Sbjct: 785 LYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFP-SVP-VMALTATANPRVQKD 842
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY--VDEVFSFH-RSSKHYYIL 426
+++ L+I + + R NL+ V ++ ++ A+ ++ + +H S Y L
Sbjct: 843 ILTQLKILQPQVFSMSFNRHNLKYYVL----PKKPKKVAFDCLEWIRKYHPHDSGIIYCL 898
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK-IRVVVATVAFGMG 485
E D ++ L + ++ +YH+G+ R +Q + + +V+ AT+AFGMG
Sbjct: 899 S----RRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMG 954
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRSLMYSDG 542
+DK DV VIH SLP+S+E Y QE GRAGRDG +S+C LF D+T + LM DG
Sbjct: 955 IDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKDG 1013
>RGD|1308810 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
"bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
[GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0009378 "four-way junction helicase activity"
evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
[GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
"annealing helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0045950 "negative regulation of mitotic
recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
differentiation" evidence=ISO] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
"regulation of binding" evidence=ISO] [GO:0051259 "protein
oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=ISO] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
Length = 999
Score = 456 (165.6 bits), Expect = 5.2e-40, P = 5.2e-40
Identities = 121/361 (33%), Positives = 196/361 (54%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++ R +G +FR QLEAI L + +++PTG GKSLCYQ+PA + PG+T+V+ PL
Sbjct: 648 KIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPL 707
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVGAI-KVLFVSPERFLNADFL 307
+L++DQ++ L I +L+ + E A ++L + I K+L+V+PE+ ++ L
Sbjct: 708 RSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRL 767
Query: 308 SIFTATSL-----ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXX 362
I T +L ++ V+DEAHCVS+W H+FR Y +V ++A+
Sbjct: 768 -ISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFP-SVP-VMALTATA 824
Query: 363 XXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVD--EVFSFHRSS 420
+D+++ L+I + + R NL+ V + + +D E H
Sbjct: 825 NPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVL-----PKKPKKVALDCLEWIRKHHPY 879
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS-NKIRVVVAT 479
I +S K E D ++ L ++ +YH+G+ R +Q + + + +V+ AT
Sbjct: 880 DSGIIYCLSRK--ECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICAT 937
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRSL 537
+AFGMG+DK DV V+H SLP+S+E Y QE GRAGRDG +S+C LF D+T RL+ L
Sbjct: 938 IAFGMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVT--RLKRL 995
Query: 538 M 538
+
Sbjct: 996 I 996
>UNIPROTKB|F1NWK5 [details] [associations]
symbol:F1NWK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
Length = 1023
Score = 456 (165.6 bits), Expect = 5.5e-40, P = 5.5e-40
Identities = 115/351 (32%), Positives = 189/351 (53%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKM--VLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ L V+G++SF+ E+ M V +K + +PTGAGKSLCYQ+PA++ G+T+V+
Sbjct: 23 KTLGKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVIS 82
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA----IKVLFVSPERFLN 303
PL+AL+ DQ+ HL + I L+S +E +TI L + + IK+L+++PE
Sbjct: 83 PLIALIQDQVDHLLALKIKACSLNSKLSAQE-KKTI-LADLASEKPQIKLLYITPEMAAA 140
Query: 304 ADF---LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXX 360
+ F L+ + +L+S +++DEAHCVS+W H+FRP Y+ N C+ A+
Sbjct: 141 SSFQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIP-NTPCV-ALTA 198
Query: 361 XXXXXXLRDVMSALEI--PLSNLIQKAQLRDNLQLSVSLSG--NNRQNERSAYVDEVFSF 416
D+++AL++ PL+ + R NL V + + +
Sbjct: 199 TATKQVQDDIVTALKLKQPLATF-KTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEV 257
Query: 417 HRSSKHYYILQISGKHFET--DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
++ Y I D ++ L + K+YH+G+ A DR+ +Q + KI
Sbjct: 258 KNTTGVYSGCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIP 317
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V+VAT++FGMG+DK +V V H+++ +S+ Y QE GRAGRDG+ S C L+
Sbjct: 318 VIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLY 368
>MGI|MGI:1328362 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like"
species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=IGI] [GO:0000729 "DNA double-strand
break processing" evidence=ISO] [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000800 "lateral element"
evidence=ISO] [GO:0001673 "male germ cell nucleus" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005657
"replication fork" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO;IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISO] [GO:0009378 "four-way junction
helicase activity" evidence=ISO] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031297
"replication fork processing" evidence=ISO] [GO:0036310 "annealing
helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IDA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045910 "negative regulation of
DNA recombination" evidence=ISO] [GO:0045950 "negative regulation
of mitotic recombination" evidence=IMP] [GO:0046632 "alpha-beta T
cell differentiation" evidence=IMP] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IMP]
[GO:0051098 "regulation of binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=IMP] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 MGI:MGI:1328362 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0003677 GO:GO:0006260
Gene3D:1.10.10.10 InterPro:IPR011991 Reactome:REACT_120463
GO:GO:0006310 GO:GO:0001673 GO:GO:0046632 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
Reactome:REACT_27235 GO:GO:0005657 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOGENOM:HOG000095239
HOVERGEN:HBG004850 OrthoDB:EOG4640B3 GO:GO:0000729 ChiTaRS:BLM
CTD:641 GO:GO:0045120 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
EMBL:Z98263 EMBL:AB008674 IPI:IPI00329943 RefSeq:NP_001035992.1
RefSeq:NP_031576.4 UniGene:Mm.12932 ProteinModelPortal:O88700
SMR:O88700 DIP:DIP-27643N STRING:O88700 PhosphoSite:O88700
PRIDE:O88700 DNASU:12144 Ensembl:ENSMUST00000081314 GeneID:12144
KEGG:mmu:12144 UCSC:uc009iaw.2 InParanoid:O88700 NextBio:280473
Bgee:O88700 CleanEx:MM_BLM Genevestigator:O88700
GermOnline:ENSMUSG00000030528 Uniprot:O88700
Length = 1416
Score = 458 (166.3 bits), Expect = 6.6e-40, P = 6.6e-40
Identities = 121/359 (33%), Positives = 196/359 (54%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G +FR QLEAI L + +++PTG GKSLCYQ+PA + PG+T+V+ PL +L++D
Sbjct: 671 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVD 730
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVGAI-KVLFVSPERFLNADFLSIFTAT 313
Q++ L I +L+ + E A ++L + I K+L+V+PE+ ++ L I T
Sbjct: 731 QVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRL-ISTLE 789
Query: 314 SL-----ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
+L ++ V+DEAHCVS+W H+FR Y +V ++A+ +
Sbjct: 790 NLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFP-SVP-VMALTATANPRVQK 847
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVD--EVFSFHRSSKHYYIL 426
D+++ L+I + + R NL+ V ++ ++ A+ D E H I
Sbjct: 848 DILTQLKILRPQVFSMSFNRHNLKYYVL----PKKPKKVAF-DCLEWIRKHHPYDSGIIY 902
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS-NKIRVVVATVAFGMG 485
+S + E D ++ L ++ +YH+G+ R +Q + + + +V+ AT+AFGMG
Sbjct: 903 CLSRR--ECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMG 960
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRSLMYSDG 542
+DK DV VIH SLP+S+E Y QE GRAGRDG +S+C LF D+T + +M DG
Sbjct: 961 IDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEKDG 1019
>ZFIN|ZDB-GENE-050809-134 [details] [associations]
symbol:recql "RecQ protein-like (DNA helicase
Q1-like)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050809-134 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
EMBL:BX914215 IPI:IPI00933301 Ensembl:ENSDART00000101198
Uniprot:F1Q4T3
Length = 640
Score = 445 (161.7 bits), Expect = 8.1e-40, P = 8.1e-40
Identities = 115/368 (31%), Positives = 186/368 (50%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMI 255
++ FR Q AI + + K LV+PTG GKSLCYQ+PA+ G TLV+ PLV+LM
Sbjct: 92 IFQLSKFRPLQRAAINLSMSGKDLFLVMPTGRGKSLCYQLPALCSKGFTLVIAPLVSLME 151
Query: 256 DQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI--QVGAIKVLFVSPERFLNADFL--SIF 310
DQL +L V + L++S E+ + + + K+L+V+PE+ + L +
Sbjct: 152 DQLMYLQSVNVPAVTLNASSSKEDSKRILAGMTDKNSPFKLLYVTPEKIAKSKLLMSKLE 211
Query: 311 TATS--LISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
A + L++ + VDE HC S+W H+FRP Y NV ++ + L+
Sbjct: 212 KAFNMGLLARIAVDEVHCCSQWGHDFRPDYKLLGILKRQFP-NVP-LIGLTATATSNVLK 269
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D L + + R NL V N ++ A + + S Y+
Sbjct: 270 DCQKILCVQEPVTLTAPFNRPNLYYEVRFKDNEDCTDQIASLIRG-RYKNQSGIVYVF-- 326
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
S K + ++++ L I + YH+ + +S + + + S KI+VVVATVAFGMG+DK
Sbjct: 327 SQK--DAEVVATELQKRDIVAQPYHANMEPSHKSLVHQRWSSKKIQVVVATVAFGMGIDK 384
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
DV VIH+++ +S+E Y QE GRAGRD + C +F + FR+ +++ + + +
Sbjct: 385 ADVRFVIHHTISKSIENYYQESGRAGRDDSPADCIVFFGFMDIFRISTMVVMENTGQQKL 444
Query: 549 NKFL--CQ 554
+ + CQ
Sbjct: 445 HNMVAYCQ 452
>UNIPROTKB|H0YNU5 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
TIGRFAMs:TIGR00614 HGNC:HGNC:1058 EMBL:AC021422 EMBL:AC124248
ProteinModelPortal:H0YNU5 SMR:H0YNU5 Ensembl:ENST00000560509
Bgee:H0YNU5 Uniprot:H0YNU5
Length = 1286
Score = 456 (165.6 bits), Expect = 9.2e-40, P = 9.2e-40
Identities = 120/359 (33%), Positives = 197/359 (54%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G +FR QLEAI L + +++PTG GKSLCYQ+PA + PG+T+V+ PL +L++D
Sbjct: 663 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVD 722
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVGAI-KVLFVSPERFLNADFLSIFTAT 313
Q++ L + I +L+ + E ++L + I K+L+V+PE+ ++ L I T
Sbjct: 723 QVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRL-ISTLE 781
Query: 314 SL-----ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
+L ++ V+DEAHCVS+W H+FR Y +V ++A+ +
Sbjct: 782 NLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFP-SVP-VMALTATANPRVQK 839
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVD--EVFSFHRSSKHYYIL 426
D+++ L+I + + R NL+ V ++ ++ A+ D E H I
Sbjct: 840 DILTQLKILRPQVFSMSFNRHNLKYYVL----PKKPKKVAF-DCLEWIRKHHPYDSGIIY 894
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK-IRVVVATVAFGMG 485
+S + E D ++ L + ++ +YH+G+ R +Q+ + + +V+ AT+AFGMG
Sbjct: 895 CLSRR--ECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMG 952
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRSLMYSDG 542
+DK DV VIH SLP+S+E Y QE GRAGRDG +S+C LF D+T + +M DG
Sbjct: 953 IDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDG 1011
>UNIPROTKB|F1PAG8 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
Uniprot:F1PAG8
Length = 989
Score = 460 (167.0 bits), Expect = 9.9e-40, Sum P(2) = 9.9e-40
Identities = 118/351 (33%), Positives = 191/351 (54%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
L+ V+G+DSF+ E+ M + + K + +PTGAGKSLCYQ+PA++ G+T+VV PL
Sbjct: 16 LKKVFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPL 75
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQ--VGAIKVLFVSPERFLNADF- 306
+AL+ DQ+ HL + + L+S +E E + ++ K+L+++PE + F
Sbjct: 76 IALIQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYITPEMAASPSFQ 135
Query: 307 --LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXX 364
L+ + L+S +VVDEAHCVS+W H+FRP Y+ + CI A+
Sbjct: 136 PTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLA-HAPCI-ALTATATL 193
Query: 365 XXLRDVMSALEI--PLSNLIQ---KAQLRDNLQLSVSLS---GNNRQNERSAYVDEVFSF 416
DV +AL + P++ +A L ++Q LS GN R A +
Sbjct: 194 QVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLKALGQKADKG 253
Query: 417 HRSSKH--YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
S Y + + + T+L R ++ K+YH+G+ A +R+ +Q + K+
Sbjct: 254 LLSGCGIVYCRTREACEQLATELSYR-----GVNAKAYHAGLKASERTLVQNEWMEEKVP 308
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V+VAT++FGMG+DK +V V H+++ +S+ Y QE GRAGRDG+ S+C L+
Sbjct: 309 VIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 359
Score = 39 (18.8 bits), Expect = 9.9e-40, Sum P(2) = 9.9e-40
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 502 SLEEYVQEIGRAGRDGRL 519
S+ + V EI RA +DG+L
Sbjct: 597 SVLKKVAEIHRASKDGQL 614
>UNIPROTKB|P54132 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0031297
"replication fork processing" evidence=IDA] [GO:0000781
"chromosome, telomeric region" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
[GO:0048478 "replication fork protection" evidence=NAS] [GO:0000800
"lateral element" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=NAS] [GO:0051259 "protein oligomerization" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IDA] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0000405
"bubble DNA binding" evidence=IDA] [GO:0051880 "G-quadruplex DNA
binding" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0051782 "negative regulation of cell division"
evidence=IMP] [GO:0000085 "G2 phase of mitotic cell cycle"
evidence=NAS] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=NAS] [GO:0010165 "response to
X-ray" evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0031572 "G2 DNA damage checkpoint" evidence=NAS] [GO:0004386
"helicase activity" evidence=IDA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IMP] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IMP;IDA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IMP] [GO:0000729 "DNA double-strand break processing"
evidence=IDA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0000085 Gene3D:1.10.10.10 InterPro:IPR011991
Reactome:REACT_111183 GO:GO:0001673 GO:GO:0003697 GO:GO:0004003
GO:GO:0000724 GO:GO:0016363 GO:GO:0046632 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0031572 GO:GO:0005657 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
HOGENOM:HOG000095239 HOVERGEN:HBG004850 OrthoDB:EOG4640B3
GO:GO:0000729 EMBL:U39817 EMBL:AY886902 EMBL:BC093622 EMBL:BC101567
EMBL:BC115030 EMBL:BC115032 IPI:IPI00004859 PIR:A57570
RefSeq:NP_000048.1 UniGene:Hs.725208 PDB:2KV2 PDB:2RRD PDBsum:2KV2
PDBsum:2RRD ProteinModelPortal:P54132 SMR:P54132 DIP:DIP-33322N
IntAct:P54132 MINT:MINT-131918 STRING:P54132 PhosphoSite:P54132
DMDM:1705486 PaxDb:P54132 PRIDE:P54132 Ensembl:ENST00000355112
GeneID:641 KEGG:hsa:641 UCSC:uc002bpr.3 CTD:641
GeneCards:GC15P091260 HGNC:HGNC:1058 HPA:HPA005689 MIM:210900
MIM:604610 neXtProt:NX_P54132 Orphanet:125 PharmGKB:PA25369
InParanoid:P54132 OMA:NANDQAI ChEMBL:CHEMBL1293237
EvolutionaryTrace:P54132 GenomeRNAi:641 NextBio:2600
PMAP-CutDB:P54132 ArrayExpress:P54132 Bgee:P54132 CleanEx:HS_BLM
Genevestigator:P54132 GermOnline:ENSG00000197299 GO:GO:0000800
GO:GO:0045120 GO:GO:0036310 GO:GO:0000405 GO:GO:0009378
GO:GO:0051880 GO:GO:0051782 GO:GO:0045910 GO:GO:0045950
GO:GO:0046641 GO:GO:0051098 GO:GO:0031297 GO:GO:0048478
Uniprot:P54132
Length = 1417
Score = 456 (165.6 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 120/359 (33%), Positives = 197/359 (54%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G +FR QLEAI L + +++PTG GKSLCYQ+PA + PG+T+V+ PL +L++D
Sbjct: 663 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVD 722
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVGAI-KVLFVSPERFLNADFLSIFTAT 313
Q++ L + I +L+ + E ++L + I K+L+V+PE+ ++ L I T
Sbjct: 723 QVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRL-ISTLE 781
Query: 314 SL-----ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
+L ++ V+DEAHCVS+W H+FR Y +V ++A+ +
Sbjct: 782 NLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFP-SVP-VMALTATANPRVQK 839
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVD--EVFSFHRSSKHYYIL 426
D+++ L+I + + R NL+ V ++ ++ A+ D E H I
Sbjct: 840 DILTQLKILRPQVFSMSFNRHNLKYYVL----PKKPKKVAF-DCLEWIRKHHPYDSGIIY 894
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK-IRVVVATVAFGMG 485
+S + E D ++ L + ++ +YH+G+ R +Q+ + + +V+ AT+AFGMG
Sbjct: 895 CLSRR--ECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMG 952
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRSLMYSDG 542
+DK DV VIH SLP+S+E Y QE GRAGRDG +S+C LF D+T + +M DG
Sbjct: 953 IDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDG 1011
>WB|WBGene00019334 [details] [associations]
symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
NextBio:887386 Uniprot:Q9TXJ8
Length = 631
Score = 443 (161.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 114/358 (31%), Positives = 184/358 (51%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ + + FR Q AI V+ K+ +++L TG GKSLCYQ+PA++ GL LVV PL
Sbjct: 99 KILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANGLALVVSPL 158
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI--QVGAIKVLFVSPERFLNA--- 304
++L+ DQ+ L + I L+++ EE I + ++L+V+PE+ +
Sbjct: 159 ISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTPEKLAKSKKM 218
Query: 305 -DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXX 363
+ L + + L+ +DE HC S+W H+FR Y V IL +
Sbjct: 219 MNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDY-SFLNVLKRQFKGVP-ILGLTATAT 276
Query: 364 XXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
L DV L I + + R NL+ V + ++E + + + + +
Sbjct: 277 SNVLDDVKDMLGIQAALTFRAGFNRSNLKYKV-VQKPGSEDECTEEIAKTIKRDFAGQTG 335
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I +S E +++ L + I K YH+ + DRS + + S KI+V+VATVAFG
Sbjct: 336 IIYCLSRNDCEK--VAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFG 393
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541
MG+DK +V VIH+SLP+S+E Y QE GRAGRDG+ + C L+ F+ S++ +
Sbjct: 394 MGIDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLADIFKQSSMVQQE 451
>UNIPROTKB|E1BKM5 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
Length = 987
Score = 453 (164.5 bits), Expect = 6.4e-39, Sum P(2) = 6.4e-39
Identities = 115/349 (32%), Positives = 190/349 (54%)
Query: 193 LRLVYGYDSFRDG-QLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
L+ V+G+DSF+ Q +AI V+ K + +PTGAGKSLCYQ+PA++ G+T+VV PL
Sbjct: 19 LKKVFGFDSFKTPLQEKAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPL 78
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA--IKVLFVSPERFLNADF- 306
+AL+ DQ+ HL + + L+S +E E + ++ K+L+++PE + F
Sbjct: 79 IALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQEKPQTKLLYITPEMAASTSFQ 138
Query: 307 --LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXX 364
L+ + L+S +VVDEAHCVS+W H+FRP Y+ + C+ A+
Sbjct: 139 PTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLA-DAPCV-ALTATATP 196
Query: 365 XXLRDVMSALEI--PLSNLIQ---KAQLRDNLQLSVSLS---GNNRQNERSAYVDEVFSF 416
DV +AL + P++ +A L ++Q L GN R A +
Sbjct: 197 QVREDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLPDPYGNLRDFCLKALGQKA--- 253
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
+ I+ + + ++ L ++ K+YH+G+ A +R+ +Q + K+ V+
Sbjct: 254 DKGLSGCGIIYCRTRE-ACEQLATELSYRGVNAKAYHAGLKAPERTLVQNEWMEEKVPVI 312
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
VAT++FGMG+DK +V V H+++ +S+ Y QE GRAGRDG+ S+C L+
Sbjct: 313 VATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 361
Score = 39 (18.8 bits), Expect = 6.4e-39, Sum P(2) = 6.4e-39
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 502 SLEEYVQEIGRAGRDGRL 519
S+ + V EI RA +DG+L
Sbjct: 599 SVLKKVAEIHRASKDGQL 616
>UNIPROTKB|F1RX70 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000017248 Uniprot:F1RX70
Length = 1409
Score = 449 (163.1 bits), Expect = 6.5e-39, P = 6.5e-39
Identities = 112/337 (33%), Positives = 182/337 (54%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L+ +G+ SF+ Q + I +L+ ++ ++V+ TG GKSLC+Q P + + G+ LV+ PL+
Sbjct: 508 LKTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPPVSVGGIGLVISPLI 567
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL--NADFLS 308
+LM DQ+ L I FL S+Q + V E I+L G ++++++PE F N D L
Sbjct: 568 SLMEDQVLQLEMSNIPACFLGSAQS-KNVLEDIKL---GKYRIVYLTPE-FCSGNLDLLQ 622
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
A I+++ VDEAHC+SEW H+FR S+ + I+A+
Sbjct: 623 HLEANIGITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALP--LVPIVALTATGTSSIRE 680
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSL-SGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++ L++ + R NL L V +G+ Q+ + V + S I
Sbjct: 681 DIVRCLKLKDPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVQKTSSAWEFEGPTIIYC 740
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S K T+ ++ L ++ ++YH+G+ R ++ F ++I+ V+AT+AFGMG++
Sbjct: 741 PSRKM--TEQVTAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGIN 798
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
K D+ VIHY P+ +E Y QEIGRAGRDG S CH+
Sbjct: 799 KADIRKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHI 835
>UNIPROTKB|I3LC91 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000022344 Uniprot:I3LC91
Length = 1507
Score = 449 (163.1 bits), Expect = 7.3e-39, P = 7.3e-39
Identities = 112/337 (33%), Positives = 182/337 (54%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L+ +G+ SF+ Q + I +L+ ++ ++V+ TG GKSLC+Q P + + G+ LV+ PL+
Sbjct: 607 LKTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPPVSVGGIGLVISPLI 666
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL--NADFLS 308
+LM DQ+ L I FL S+Q + V E I+L G ++++++PE F N D L
Sbjct: 667 SLMEDQVLQLEMSNIPACFLGSAQS-KNVLEDIKL---GKYRIVYLTPE-FCSGNLDLLQ 721
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
A I+++ VDEAHC+SEW H+FR S+ + I+A+
Sbjct: 722 HLEANIGITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALP--LVPIVALTATGTSSIRE 779
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSL-SGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++ L++ + R NL L V +G+ Q+ + V + S I
Sbjct: 780 DIVRCLKLKDPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVQKTSSAWEFEGPTIIYC 839
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S K T+ ++ L ++ ++YH+G+ R ++ F ++I+ V+AT+AFGMG++
Sbjct: 840 PSRKM--TEQVTAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGIN 897
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
K D+ VIHY P+ +E Y QEIGRAGRDG S CH+
Sbjct: 898 KADIRKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHI 934
>UNIPROTKB|F1NAR0 [details] [associations]
symbol:F1NAR0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000403 "Y-form DNA
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0010259 "multicellular organismal aging" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0032066 "nucleolus
to nucleoplasm transport" evidence=IEA] [GO:0032389 "MutLalpha
complex" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 OMA:GIEGDQW EMBL:AADN02016143 IPI:IPI01017120
Ensembl:ENSGALT00000016720 Uniprot:F1NAR0
Length = 1367
Score = 448 (162.8 bits), Expect = 8.0e-39, P = 8.0e-39
Identities = 112/336 (33%), Positives = 178/336 (52%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVL-DKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L+ +G+ SF+ Q + I VL DK+ ++V+ TG GKSLCYQ P + G +V+CPL+
Sbjct: 451 LKTYFGHSSFKPVQWKVIHSVLEDKRDNLVVMATGYGKSLCYQFPPVYTGGTGIVICPLI 510
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL--NADFLSI 309
+LM DQ+ L L S + ++V + I+ G +V++++PE F N + L
Sbjct: 511 SLMEDQVLQLTMSGISSCLLGSAQSKDVKDNIK---AGLYRVIYMTPE-FCSGNLELLQD 566
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
T+ I+L+ VDEAHC+SEW H+FR S+ +V I+A+ D
Sbjct: 567 IDRTTGIALIAVDEAHCISEWGHDFRISFRKLNSLKKALP-SVP-IVALTATASPSIRED 624
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSL-SGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+++ L + + + R NL L V SGN ++ + + S + I+
Sbjct: 625 IVNCLNLKNPQVTCTSFDRPNLYLEVGRQSGNTLRDLKQFLTRKGSSSTYEFEGPTIIYC 684
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ T+ + L ++ +YH+G+ + R F ++I+ VVATVAFGMG++K
Sbjct: 685 PSRK-ATEQVMFELNKLGVTCGAYHAGMGIQKRRDTHHQFMRDEIQCVVATVAFGMGINK 743
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
D+ VIHY P+ +E Y QEIGRAGRDG + CH+
Sbjct: 744 ADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASCHV 779
>DICTYBASE|DDB_G0268512 [details] [associations]
symbol:wrn "Werner syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
OMA:FLFNKTE Uniprot:B0G0Y4
Length = 1136
Score = 454 (164.9 bits), Expect = 9.6e-39, Sum P(2) = 9.6e-39
Identities = 135/461 (29%), Positives = 209/461 (45%)
Query: 130 NGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSYRRTXXXXXXXXXXXXXXXXXXXDENL 189
N N N NNN N N K ++ D +
Sbjct: 232 NNNNNNNNNNNNNNNNNNNNNNNNNNENNNKTNFNSNPSITSFSNNNNNNYNDE--DNKI 289
Query: 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
+L+ +G SFR QLE IK + + L + TG GKSLC+QIP + L +VV P
Sbjct: 290 IEILKKYFGLHSFRPNQLEVIKHTISGGDSFLSMATGTGKSLCFQIPPLYLNKTAIVVSP 349
Query: 250 LVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
LV+L+ DQ L + I LSS + ++ LI G +++++PER +N ++ S
Sbjct: 350 LVSLITDQTLKLKSLGIKVTKLSSDIKSS--SKEYELIFKGYYNLVYITPERIIN-EYQS 406
Query: 309 I--FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXX 366
I I L +DEAHC+S+W H+FR SY V I+A+
Sbjct: 407 IGELVRNEKICLFAIDEAHCISQWGHSFRESYRKLQELRNQFPT-VP-IMAVTATATKSI 464
Query: 367 LRDVMSALEIPLSN--LIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS---K 421
D+++ L I N + + ++ R N+ V + N+ +D + ++
Sbjct: 465 ESDIINNLGIGNGNCKMFKSSKNRPNIYYKVIIKDKLVSNDFKMILDILLETRKTIGVVS 524
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
+ I+ + +L +R+LCDN I YHS + K R + F NK V+VAT+A
Sbjct: 525 NSTIIYCTTIQIANEL-NRFLCDNKIQSNVYHSQLGDKQRDETLKNFLFNKTEVIVATIA 583
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541
FGMG+DK DV +I+Y +S+E++ QE GRAGRDG L L + + F S + +
Sbjct: 584 FGMGIDKHDVRLIINYGASKSVEDFYQESGRAGRDG-LQSLSLIIYSLQDFVKSSFLLRN 642
Query: 542 GVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKE 582
+ Y NK+ ++ + L S S+ +FD E
Sbjct: 643 N-NNY--NKYSSSSSSSQSSQSSPLSS---SSSPSQFDSLE 677
Score = 39 (18.8 bits), Expect = 9.6e-39, Sum P(2) = 9.6e-39
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 130 NGEGNFVRLNLNNNKRKFANKGKRNKS 156
N N N NNN +K N N +
Sbjct: 134 NNNNNKNNNNNNNNNKKNNNNNNNNNN 160
Score = 39 (18.8 bits), Expect = 9.6e-39, Sum P(2) = 9.6e-39
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 125 KLRKCNGEGNFVRLNLNNNKRKFANKGKRNKS 156
++ N N N NNN K N N +
Sbjct: 128 QMNDINNNNNNKNNNNNNNNNKKNNNNNNNNN 159
>TAIR|locus:2180255 [details] [associations]
symbol:RECQSIM "RECQ helicase SIM" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR009060 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:AC007478
InterPro:IPR015940 PROSITE:PS50030 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0043138 EMBL:AC069556
HSSP:P15043 EMBL:AJ404475 EMBL:AY059754 EMBL:AY133823
IPI:IPI00537732 RefSeq:NP_568499.1 UniGene:At.10179
ProteinModelPortal:Q9FT69 SMR:Q9FT69 IntAct:Q9FT69
EnsemblPlants:AT5G27680.1 GeneID:832830 KEGG:ath:AT5G27680
TAIR:At5g27680 HOGENOM:HOG000084012 InParanoid:Q9FT69 KO:K10900
OMA:CRAKILV PhylomeDB:Q9FT69 ProtClustDB:CLSN2689878
Genevestigator:Q9FT69 Uniprot:Q9FT69
Length = 858
Score = 253 (94.1 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 70/237 (29%), Positives = 117/237 (49%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
++ + +LR +G S R Q EA+ + K +++ TG+GKSLC+QIPA++ + +
Sbjct: 153 EKRVNSILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVV 212
Query: 246 VVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ L + FL S Q + E + +Q G ++++V PE +
Sbjct: 213 VISPLISLMHDQCLKLSRHKVSACFLGSGQLDNCIEE--KAMQ-GMYQIIYVCPETVVRL 269
Query: 305 -DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXX-XXNVEC------IL 356
L T I+L +DEAHCVS+W H+FRP Y N+E I+
Sbjct: 270 IKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIM 329
Query: 357 AMXXXXXXXXLRDVMSALEIPL-SNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE 412
A+ D++ +L + + ++ + R NLQ SV ++R S+Y +
Sbjct: 330 ALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVK---HSRTKFASSYAKD 383
Score = 246 (91.7 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 56/145 (38%), Positives = 81/145 (55%)
Query: 438 ISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHY 497
I++YLC + +Y++ +P K ++ + F NK++VVVAT+AFGMG+DK++V +IHY
Sbjct: 513 IAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHY 572
Query: 498 SLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFT 557
+SLE Y QE GRAGRDG L+ C L+ D L S E A K L F
Sbjct: 573 GWLQSLEAYYQEAGRAGRDGELAECVLYADLSRAPTLLPSRRSKEQTEQAY-KMLSDCFR 631
Query: 558 NGMNSHGKLCSLVKESASRKFDIKE 582
GMN+ ++ E +F K+
Sbjct: 632 YGMNTSQCRAKILVEYFGEEFSSKK 656
>UNIPROTKB|F1PZR3 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010395
Uniprot:F1PZR3
Length = 1499
Score = 444 (161.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 115/337 (34%), Positives = 179/337 (53%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L++ +G+ SF+ Q + I VL+ ++ ++V+ TG GKSLC+Q P + + LV+ PL+
Sbjct: 598 LKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVISPLI 657
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF--LS 308
+LM DQ+ L I FL S+Q + V E I+L G ++++++PE F + + L
Sbjct: 658 SLMEDQVLQLKMSNIPACFLGSAQS-KNVLEDIKL---GKYRIVYITPE-FCSGNLFLLQ 712
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
A I+L+ VDEAHC+SEW H+FR S+ +V I+A+
Sbjct: 713 QLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILP-SVP-IVALTATASSSIRE 770
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSL-SGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++ L + + R NL L V +G+ Q+ V + S I
Sbjct: 771 DIVRCLNLKNPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTSSIWEFEGPTIIYC 830
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S K T+ ++ L ++ +YH+G+ K R I F ++I+ VVAT+AFGMG++
Sbjct: 831 PSRK--TTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGIN 888
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
K D+ VIHY P+ +E Y QEIGRAGRDG S CH+
Sbjct: 889 KADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHV 925
>UNIPROTKB|F1PUF8 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000037050
OMA:TERICLM Uniprot:F1PUF8
Length = 1574
Score = 444 (161.4 bits), Expect = 2.8e-38, P = 2.8e-38
Identities = 115/337 (34%), Positives = 179/337 (53%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L++ +G+ SF+ Q + I VL+ ++ ++V+ TG GKSLC+Q P + + LV+ PL+
Sbjct: 630 LKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVISPLI 689
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF--LS 308
+LM DQ+ L I FL S+Q + V E I+L G ++++++PE F + + L
Sbjct: 690 SLMEDQVLQLKMSNIPACFLGSAQS-KNVLEDIKL---GKYRIVYITPE-FCSGNLFLLQ 744
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
A I+L+ VDEAHC+SEW H+FR S+ +V I+A+
Sbjct: 745 QLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILP-SVP-IVALTATASSSIRE 802
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSL-SGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++ L + + R NL L V +G+ Q+ V + S I
Sbjct: 803 DIVRCLNLKNPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTSSIWEFEGPTIIYC 862
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S K T+ ++ L ++ +YH+G+ K R I F ++I+ VVAT+AFGMG++
Sbjct: 863 PSRK--TTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGIN 920
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
K D+ VIHY P+ +E Y QEIGRAGRDG S CH+
Sbjct: 921 KADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHV 957
>MGI|MGI:109635 [details] [associations]
symbol:Wrn "Werner syndrome homolog (human)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000403
"Y-form DNA binding" evidence=ISO] [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=ISO;IGI;IMP] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=ISO] [GO:0001302 "replicative cell aging"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO;IMP] [GO:0006260
"DNA replication" evidence=ISO;IMP] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0006979 "response to oxidative
stress" evidence=ISO] [GO:0007569 "cell aging" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO;IDA] [GO:0009267 "cellular
response to starvation" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=ISO] [GO:0010225 "response to
UV-C" evidence=ISO] [GO:0010259 "multicellular organismal aging"
evidence=ISO;IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030145 "manganese
ion binding" evidence=ISO] [GO:0031297 "replication fork
processing" evidence=ISO] [GO:0032066 "nucleolus to nucleoplasm
transport" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042803
"protein homodimerization activity" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0043138 "3'-5'
DNA helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051345 "positive regulation of hydrolase
activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0071480 "cellular response to gamma radiation"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 MGI:MGI:109635
GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145 GO:GO:0006310
GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 eggNOG:COG0514
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0032066 KO:K10900 CTD:7486
HOGENOM:HOG000146447 HOVERGEN:HBG000325 OMA:GIEGDQW
OrthoDB:EOG4DNF3J EMBL:D86527 EMBL:D86526 EMBL:AF091215
EMBL:AF091216 EMBL:AF241636 EMBL:AC153789 EMBL:AC115809
EMBL:BC050921 EMBL:BC060700 IPI:IPI00113830 PIR:T17452 PIR:T30247
RefSeq:NP_001116294.1 RefSeq:NP_035851.3 UniGene:Mm.228805 PDB:2E6L
PDB:2E6M PDBsum:2E6L PDBsum:2E6M ProteinModelPortal:O09053
SMR:O09053 DIP:DIP-27642N STRING:O09053 PhosphoSite:O09053
PaxDb:O09053 PRIDE:O09053 Ensembl:ENSMUST00000033990
Ensembl:ENSMUST00000033991 GeneID:22427 KEGG:mmu:22427
InParanoid:Q80YP9 EvolutionaryTrace:O09053 NextBio:302865
Bgee:O09053 CleanEx:MM_WRN Genevestigator:O09053
GermOnline:ENSMUSG00000031583 Uniprot:O09053
Length = 1401
Score = 450 (163.5 bits), Expect = 6.3e-38, Sum P(2) = 6.3e-38
Identities = 114/368 (30%), Positives = 191/368 (51%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L+ +G+ SF+ Q + I VL+ ++ ++V+ TG GKSLC+Q P + + +V+ PL+
Sbjct: 504 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 252 ALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL--NADFLS 308
+LM DQ+ L + L S+Q + + +++G +V++++PE F N D L
Sbjct: 564 SLMEDQVLQLELSNVPACLLGSAQSKNILGD----VKLGKYRVIYITPE-FCSGNLDLLQ 618
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
++ I+L+ VDEAHC+SEW H+FR S+ + ++A+
Sbjct: 619 QLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALP--LVPVIALSATASSSIRE 676
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSL-SGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++S L + + R NL L V +GN Q+ + V + S I
Sbjct: 677 DIISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYC 736
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S K T+ ++ L +++ ++YH+G+ +R + F ++I+ VVATVAFGMG++
Sbjct: 737 PSRKM--TEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGIN 794
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ VIHY P+ +E Y QEIGRAGRDG S CHL + R+L+ +++
Sbjct: 795 KADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEIHDEKFR 854
Query: 548 INKFLCQV 555
+ K V
Sbjct: 855 LYKLKMMV 862
Score = 39 (18.8 bits), Expect = 6.3e-38, Sum P(2) = 6.3e-38
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 687 IVEVPSD-----FCALSAHLTKWLSEVEN 710
+VEVP + C+L+ KWL E +
Sbjct: 993 LVEVPKENKYIKTCSLTKKGRKWLGEASS 1021
Score = 37 (18.1 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 744 CLQKNILDYFRGDDNCD 760
CLQK LD + CD
Sbjct: 886 CLQKASLDIMGTEKCCD 902
>UNIPROTKB|Q14191 [details] [associations]
symbol:WRN "Werner syndrome ATP-dependent helicase"
species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0040009
"regulation of growth rate" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031297 "replication fork processing" evidence=IMP;IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0007569 "cell aging" evidence=IMP]
[GO:0010259 "multicellular organismal aging" evidence=IMP]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0007568 "aging" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA;IMP]
[GO:0004386 "helicase activity" evidence=IDA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=IDA] [GO:0010225 "response to UV-C"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0032389 "MutLalpha complex" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA helicase
activity" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0009378 "four-way junction helicase activity"
evidence=IDA] [GO:0051880 "G-quadruplex DNA binding" evidence=IDA]
[GO:0006284 "base-excision repair" evidence=IDA] [GO:0051345
"positive regulation of hydrolase activity" evidence=IDA]
[GO:0006979 "response to oxidative stress" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0000287 "magnesium ion
binding" evidence=IDA] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0071480 "cellular response to gamma
radiation" evidence=IDA] [GO:0004527 "exonuclease activity"
evidence=IDA] [GO:0009267 "cellular response to starvation"
evidence=IDA] [GO:0032066 "nucleolus to nucleoplasm transport"
evidence=IDA] [GO:0042981 "regulation of apoptotic process"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IMP;IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005813 Pathway_Interaction_DB:telomerasepathway
GO:GO:0042803 GO:GO:0005654 GO:GO:0006979 GO:GO:0005730
GO:GO:0042981 GO:GO:0032403 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 GO:GO:0004003 SUPFAM:SSF53098
MIM:114500 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345 GO:GO:0010259
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0010225 GO:GO:0007569 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403
GO:GO:0000731 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0031297 GO:GO:0043138 GO:GO:0032066 KO:K10900 EMBL:L76937
EMBL:AY818673 EMBL:AF091214 EMBL:AF181897 EMBL:AF181896
EMBL:AY442327 EMBL:AC084736 IPI:IPI00029107 RefSeq:NP_000544.2
UniGene:Hs.632050 PDB:2AXL PDB:2DGZ PDB:2E1E PDB:2E1F PDB:2FBT
PDB:2FBV PDB:2FBX PDB:2FBY PDB:2FC0 PDB:3AAF PDBsum:2AXL
PDBsum:2DGZ PDBsum:2E1E PDBsum:2E1F PDBsum:2FBT PDBsum:2FBV
PDBsum:2FBX PDBsum:2FBY PDBsum:2FC0 PDBsum:3AAF DisProt:DP00443
ProteinModelPortal:Q14191 SMR:Q14191 DIP:DIP-31380N IntAct:Q14191
MINT:MINT-95856 STRING:Q14191 PhosphoSite:Q14191 DMDM:6136393
PaxDb:Q14191 PRIDE:Q14191 Ensembl:ENST00000298139 GeneID:7486
KEGG:hsa:7486 UCSC:uc003xio.4 CTD:7486 GeneCards:GC08P030948
H-InvDB:HIX0007441 HGNC:HGNC:12791 HPA:HPA028661 MIM:277700
MIM:604611 neXtProt:NX_Q14191 Orphanet:902 PharmGKB:PA367
HOGENOM:HOG000146447 HOVERGEN:HBG000325 InParanoid:Q14191
OMA:GIEGDQW OrthoDB:EOG4DNF3J PhylomeDB:Q14191
EvolutionaryTrace:Q14191 GenomeRNAi:7486 NextBio:29326 Bgee:Q14191
CleanEx:HS_WRN Genevestigator:Q14191 GermOnline:ENSG00000165392
Uniprot:Q14191
Length = 1432
Score = 440 (159.9 bits), Expect = 6.6e-38, P = 6.6e-38
Identities = 111/335 (33%), Positives = 174/335 (51%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L++ +G+ SF+ Q + I VL+ ++ + V+ TG GKSLC+Q P + + + LV+ PL+
Sbjct: 540 LKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVISPLI 599
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL-NADFLSI 309
+LM DQ+ L I FL S+Q E V I+L G ++++V+PE N L
Sbjct: 600 SLMEDQVLQLKMSNIPACFLGSAQS-ENVLTDIKL---GKYRIVYVTPEYCSGNMGLLQQ 655
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
A I+L+ VDEAHC+SEW H+FR S+ + I+A+ D
Sbjct: 656 LEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALP--MVPIVALTATASSSIRED 713
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L + + R NL L V N + ++ + S H + I+
Sbjct: 714 IVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVKTSS-HWEFEGPTIIYCP 772
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ T ++ L ++S +YH+G+ R I F ++I+ V+AT+AFGMG++K
Sbjct: 773 SRKM-TQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKA 831
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
D+ VIHY P+ +E Y QEIGRAGRDG S CH+
Sbjct: 832 DIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHV 866
>WB|WBGene00006944 [details] [associations]
symbol:wrn-1 species:6239 "Caenorhabditis elegans"
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IMP] [GO:0010212
"response to ionizing radiation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006259 "DNA metabolic
process" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005662 "DNA replication factor A complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0008340 GO:GO:0002009
GO:GO:0040007 GO:GO:0018991 GO:GO:0005694 GO:GO:0005654
GO:GO:0002119 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0010212 GO:GO:0007049 GO:GO:0006310 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K10900 EMBL:FO080970
PIR:T16087 RefSeq:NP_495324.2 ProteinModelPortal:Q19546 SMR:Q19546
IntAct:Q19546 MINT:MINT-226609 STRING:Q19546 PaxDb:Q19546
EnsemblMetazoa:F18C5.2 GeneID:174081 KEGG:cel:CELE_F18C5.2
UCSC:F18C5.2 CTD:174081 WormBase:F18C5.2 HOGENOM:HOG000016918
InParanoid:Q19546 OMA:CSGFDRP NextBio:882429 Uniprot:Q19546
Length = 1056
Score = 437 (158.9 bits), Expect = 7.9e-38, P = 7.9e-38
Identities = 121/360 (33%), Positives = 182/360 (50%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ FR+ Q + ++ VL K +++ TG GKS+CYQ+P+++L +T+VV PL++LM D
Sbjct: 223 FGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVVVSPLISLMND 282
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I L E + + I+ +++SPE + L + T+
Sbjct: 283 QVTTLVSKGIDAVKLDGHSTQIEWDQVAN--NMHRIRFIYMSPEMVTSQKGLELLTSCRK 340
Query: 316 -ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXX-NVECILAMXXXXXXXXLRDVMSA 373
ISL+ +DEAHCVS+W H+FR SY N+ I A+ DV++
Sbjct: 341 HISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMI-ALTATATVRVRDDVIAN 399
Query: 374 LEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV--DEVFSFHRSSKHYYILQISGK 431
L + + + R NL +SV S + + ++ DEV H I+ K
Sbjct: 400 LRLRKPLITTTSFDRKNLYISVH-SSKDMAEDLGLFMKTDEVKGRHFGGPT--IIYCQTK 456
Query: 432 HFETDLISRYLCDNSISVKS--YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
D ++ L I V+S YH+G+ R + F +KI +VATVAFGMG+DK
Sbjct: 457 QMVDD-VNCVL--RRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVAFGMGIDKP 513
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITY--FRLRSLMYSDGVDE 545
DV VIHY P ++E Y QEIGRAGRDG S C +F D+ F+LR+ + V E
Sbjct: 514 DVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKLRNSQQKEEVVE 573
>UNIPROTKB|F1PZR2 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010396
Uniprot:F1PZR2
Length = 1336
Score = 437 (158.9 bits), Expect = 1.3e-37, P = 1.3e-37
Identities = 112/337 (33%), Positives = 180/337 (53%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L++ +G+ SF+ Q + I VL+ ++ ++V+ TG GKSLC+Q P + + LV+ PL+
Sbjct: 517 LKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVISPLI 576
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF--LS 308
+LM DQ+ L I FL S+Q + V E I+L G ++++++PE F + + L
Sbjct: 577 SLMEDQVLQLKMSNIPACFLGSAQS-KNVLEDIKL---GKYRIVYITPE-FCSGNLFLLQ 631
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
A I+L+ VDEAHC+SEW H+FR S+ +V I+A+
Sbjct: 632 QLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILP-SVP-IVALTATASSSIRE 689
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSL-SGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++ L + + R NL L V +G+ Q+ V + + + I+
Sbjct: 690 DIVRCLNLKNPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTRNSIWEFEGPTIIY 749
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ T+ ++ L ++ +YH+G+ K R I F ++I+ VVAT+AFGMG++
Sbjct: 750 CPSRK-TTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGIN 808
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
K D+ VIHY P+ +E Y QEIGRAGRDG S CH+
Sbjct: 809 KADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHV 845
>WB|WBGene00004322 [details] [associations]
symbol:rcq-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008340 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006974 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:Z38112 HSSP:P15043 KO:K10902 PIR:T20430 RefSeq:NP_497810.1
ProteinModelPortal:Q19046 SMR:Q19046 PaxDb:Q19046
EnsemblMetazoa:E03A3.2 GeneID:175522 KEGG:cel:CELE_E03A3.2
UCSC:E03A3.2 CTD:175522 WormBase:E03A3.2 HOGENOM:HOG000021815
InParanoid:Q19046 OMA:AWAEIFN NextBio:888512 Uniprot:Q19046
Length = 809
Score = 427 (155.4 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 115/343 (33%), Positives = 182/343 (53%)
Query: 206 QLEAIKMVLDKKSTMLV-LPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHL--- 261
Q++AI +L +K + V LPTGAGKSLCYQ+PA++ G+T+V+ PL+ALM DQ+ L
Sbjct: 183 QMQAINCILKRKCDVYVSLPTGAGKSLCYQLPAVVHGGITVVISPLIALMKDQISSLKRK 242
Query: 262 --PPVIHGGFLSSSQRPE---EVAE---TIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
P L++ +R E+A+ TIR++ + A V ++ LN
Sbjct: 243 GIPCETLNSTLTTVERSRIMGELAKEKPTIRMLYLTAEGVATDGTKKLLNG-----LANR 297
Query: 314 SLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVMSA 373
++ +VVDEAHCV++W H+FRP Y+ V + A+ D+
Sbjct: 298 DVLRYIVVDEAHCVTQWGHDFRPDYLTLGSLRDVCP-GVPWV-ALTATANAKAQDDIAFQ 355
Query: 374 LEIPLSNLIQKAQLRDNLQ--------LSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY- 424
L++ + RDNL ++ L+ + + + + E ++ K +
Sbjct: 356 LKLRNPESFKSGTYRDNLFYDNHMASFITKCLTVDAKTSSSNLTKHEKAERSQNKKTFTG 415
Query: 425 --ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
I+ ++ E +++ L I +YH+G+ KDR+ +QE + +N+I VV ATVAF
Sbjct: 416 SAIVYCRSRN-ECGQVAKMLEIAGIPAMAYHAGLGKKDRNEVQEKWMNNEIPVVAATVAF 474
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
GMG+DK DV AVIH+S ++L Y QE GRAGRDG+ SYC ++
Sbjct: 475 GMGIDKPDVRAVIHWSPSQNLAGYYQEAGRAGRDGKRSYCRIY 517
>UNIPROTKB|H9KZS5 [details] [associations]
symbol:H9KZS5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0043473 "pigmentation"
evidence=IEA] [GO:0045875 "negative regulation of sister chromatid
cohesion" evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
evidence=IEA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00550000074520
EMBL:AADN02044351 EMBL:AADN02044352 EMBL:AADN02044353
Ensembl:ENSGALT00000018179 OMA:CATREST Uniprot:H9KZS5
Length = 252
Score = 273 (101.2 bits), Expect = 8.3e-37, Sum P(3) = 8.3e-37
Identities = 49/77 (63%), Positives = 62/77 (80%)
Query: 451 SYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEI 510
+YH+G+ A +R R+Q F ++RVVVATVAFGMGLDK DV AV+HY++P + E YVQEI
Sbjct: 174 AYHAGLTAAERRRVQSAFMRGRLRVVVATVAFGMGLDKADVRAVLHYNMPRNFESYVQEI 233
Query: 511 GRAGRDGRLSYCHLFLD 527
GRAGRDG ++CHLFLD
Sbjct: 234 GRAGRDGEPAWCHLFLD 250
Score = 107 (42.7 bits), Expect = 8.3e-37, Sum P(3) = 8.3e-37
Identities = 16/19 (84%), Positives = 19/19 (100%)
Query: 321 VDEAHCVSEWSHNFRPSYM 339
+DEAHC+SEWSHNFRPSY+
Sbjct: 4 IDEAHCISEWSHNFRPSYL 22
Score = 72 (30.4 bits), Expect = 8.3e-37, Sum P(3) = 8.3e-37
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 336 PSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVMSALEIPLSN--LIQKAQLRDNLQL 393
P ++ + C LA+ RDV + L IP + +Q A + NLQL
Sbjct: 41 PHHLLSPSSVLRDRLGIRCFLALTATATVATARDVAAHLGIPQQDGIAVQCAAVPPNLQL 100
Query: 394 SVSL 397
SVS+
Sbjct: 101 SVSV 104
>UNIPROTKB|E1BEE6 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:DAAA02060458
EMBL:DAAA02060459 EMBL:DAAA02060460 EMBL:DAAA02060461
EMBL:DAAA02060462 EMBL:DAAA02060463 EMBL:DAAA02060464
EMBL:DAAA02060465 EMBL:DAAA02060466 EMBL:DAAA02060467
EMBL:DAAA02060468 EMBL:DAAA02060469 EMBL:DAAA02060470
EMBL:DAAA02060471 EMBL:DAAA02060472 EMBL:DAAA02060473
EMBL:DAAA02060474 EMBL:DAAA02060475 EMBL:DAAA02060476
EMBL:DAAA02060477 EMBL:DAAA02060478 EMBL:DAAA02060479
EMBL:DAAA02060480 EMBL:DAAA02060481 EMBL:DAAA02060482
EMBL:DAAA02060483 EMBL:DAAA02060484 EMBL:DAAA02060485
EMBL:DAAA02060486 EMBL:DAAA02060487 EMBL:DAAA02060488
EMBL:DAAA02060489 EMBL:DAAA02060490 EMBL:DAAA02060491
EMBL:DAAA02060492 EMBL:DAAA02060493 EMBL:DAAA02060494
IPI:IPI00920936 Ensembl:ENSBTAT00000028778 Uniprot:E1BEE6
Length = 1404
Score = 437 (158.9 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 115/337 (34%), Positives = 179/337 (53%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L+ +G+ SF+ Q + I VL+ ++ ++V+ TG GKSLC+Q P + G+ LV+ PL+
Sbjct: 506 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMTTGYGKSLCFQYPPVYAGGIGLVISPLI 565
Query: 252 ALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL--NADFLS 308
+LM DQ+ L I FL S+Q + V E I+L G ++++++PE F N + L
Sbjct: 566 SLMEDQVLQLEISSIPACFLGSAQS-KNVVEDIKL---GKYRIVYLTPE-FCSGNLELLR 620
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
A I+L+ VDEAHC+SEW H+FR S+ V I+A+
Sbjct: 621 QLEANIGITLIAVDEAHCISEWGHDFRNSFRDLGCLKAEFP-KVP-IVALTATAGSSVRE 678
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSL-SGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++ L + + R NL L V +G+ Q+ + V + S I
Sbjct: 679 DIVCCLNLKDPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVCKSSSAWEFEGPTIIYC 738
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S K T+ ++ L ++ +YH+G+ R ++ F ++I+ V+ATVAFGMG++
Sbjct: 739 PSRKM--TEQVTAELKKLKLACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVAFGMGIN 796
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
K D+ VIHY P+ +E Y QEIGRAGRDG S CH+
Sbjct: 797 KADIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHV 833
Score = 40 (19.1 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 742 TPCLQKNILDYFRGDD-NCDVPNKIGQSSPFLRADIKVFL 780
TP +QK I D R N D NKI ++ +I +L
Sbjct: 1275 TPEIQKIIADVIRNPPINSDT-NKINLIRIYVPENIDTYL 1313
>GENEDB_PFALCIPARUM|PF14_0278 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 430 (156.4 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 110/346 (31%), Positives = 180/346 (52%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVAL 253
+GY + +D Q+EA+ KK + +V+ TG GKSLCYQIP+++ T+V+ PL++L
Sbjct: 47 FGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFTIVISPLISL 106
Query: 254 MIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312
M DQ+ +L I FL S Q+ + + I+ G K+++ SPE LN + I
Sbjct: 107 MKDQVDNLNRKRISSVFLGSGQKMNN-NKILNEIKHGIYKIVYCSPEYALNNKDVFILLK 165
Query: 313 TSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVMS 372
++ L+ +DE HC+SEW H+FRPSY + I+ + D++
Sbjct: 166 NRIL-LIAIDEVHCMSEWGHDFRPSYRKLNELRIILK-EIP-IMCLTATCTKNVQSDILK 222
Query: 373 ALEIPLSN-LIQKAQL-RDNLQLSVSLSGNNRQNERSAY-------VDEVFSFHRSSK-- 421
L L N LI+++ + + NL SV + + + ++ F +SK
Sbjct: 223 NLNFDLQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDNSKIC 282
Query: 422 HYY--ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
Y ++ ++ K E + + +L + + V YH+ + + E F ++I+++VAT
Sbjct: 283 SYNSTLIYVNSKK-ECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQIIVAT 341
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
VAFGMG+DK D+ +IHY SLE YVQ++GRAGRD + LF
Sbjct: 342 VAFGMGIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILF 387
Score = 40 (19.1 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 555 VFTNGMNSHGKLCSLVKESASRKF----DIKEEVMLTLLTC 591
+++N N++ ++ + SR++ DIK+E L LTC
Sbjct: 512 IYSNSNNNN----NINSNNNSREYYLDNDIKKETSLKSLTC 548
>UNIPROTKB|Q8ILG5 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 430 (156.4 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 110/346 (31%), Positives = 180/346 (52%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVAL 253
+GY + +D Q+EA+ KK + +V+ TG GKSLCYQIP+++ T+V+ PL++L
Sbjct: 47 FGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFTIVISPLISL 106
Query: 254 MIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312
M DQ+ +L I FL S Q+ + + I+ G K+++ SPE LN + I
Sbjct: 107 MKDQVDNLNRKRISSVFLGSGQKMNN-NKILNEIKHGIYKIVYCSPEYALNNKDVFILLK 165
Query: 313 TSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVMS 372
++ L+ +DE HC+SEW H+FRPSY + I+ + D++
Sbjct: 166 NRIL-LIAIDEVHCMSEWGHDFRPSYRKLNELRIILK-EIP-IMCLTATCTKNVQSDILK 222
Query: 373 ALEIPLSN-LIQKAQL-RDNLQLSVSLSGNNRQNERSAY-------VDEVFSFHRSSK-- 421
L L N LI+++ + + NL SV + + + ++ F +SK
Sbjct: 223 NLNFDLQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERTKKFIDNSKIC 282
Query: 422 HYY--ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
Y ++ ++ K E + + +L + + V YH+ + + E F ++I+++VAT
Sbjct: 283 SYNSTLIYVNSKK-ECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLKDEIQIIVAT 341
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
VAFGMG+DK D+ +IHY SLE YVQ++GRAGRD + LF
Sbjct: 342 VAFGMGIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILF 387
Score = 40 (19.1 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 555 VFTNGMNSHGKLCSLVKESASRKF----DIKEEVMLTLLTC 591
+++N N++ ++ + SR++ DIK+E L LTC
Sbjct: 512 IYSNSNNNN----NINSNNNSREYYLDNDIKKETSLKSLTC 548
>RGD|1564788 [details] [associations]
symbol:Wrn "Werner syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=ISO] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0001302 "replicative cell
aging" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006259 "DNA metabolic
process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0006979 "response to oxidative stress"
evidence=ISO] [GO:0007569 "cell aging" evidence=ISO] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA;ISO] [GO:0009267
"cellular response to starvation" evidence=ISO] [GO:0009378
"four-way junction helicase activity" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0010259 "multicellular
organismal aging" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0030145 "manganese ion binding" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0032066
"nucleolus to nucleoplasm transport" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0040009 "regulation of growth rate"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=ISO] [GO:0043138 "3'-5' DNA helicase activity"
evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0051345 "positive regulation of
hydrolase activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA
binding" evidence=ISO] [GO:0071480 "cellular response to gamma
radiation" evidence=ISO] [GO:0032389 "MutLalpha complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 RGD:1564788 GO:GO:0005524 GO:GO:0005813
GO:GO:0005654 GO:GO:0006979 GO:GO:0005730 GO:GO:0042981
GO:GO:0000287 GO:GO:0006284 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0030145 GO:GO:0006310 GO:GO:0009267
SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 IPI:IPI00960063 ProteinModelPortal:F1LTH9
Ensembl:ENSRNOT00000058805 Uniprot:F1LTH9
Length = 1448
Score = 418 (152.2 bits), Expect = 1.8e-35, P = 1.8e-35
Identities = 111/367 (30%), Positives = 187/367 (50%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L+ +G+ SF+ Q + I VL+ ++ ++V+ TG GKSLC+Q P + + +V+ PL+
Sbjct: 549 LKTYFGHCSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 608
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
+LM DQ+ L L S +P+ + I+L + ++ + + +N F I
Sbjct: 609 SLMEDQVLQLEMSNIPACLLGSAQPKNILGDIKLQSKYKVVEVWFTYQYCMN-QFRMIQE 667
Query: 312 AT-SL-ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
A S+ I+L+ VDEAHC+SEW H+FR S+ + ++A+ D
Sbjct: 668 ARCSVGITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALP--LVPVIALSATASSSIRED 725
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSL-SGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
++ L + ++ R NL L V +GN Q+ + V + S I
Sbjct: 726 IIRCLNLKDPHITCTGFDRPNLYLEVERKTGNILQDLKPFLVRKTSSAWEFEGPTIIYCP 785
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
S K T+ ++ L +++ ++YH+G+ +R I F ++I+ VVAT+AFGMG++K
Sbjct: 786 SRK--VTEQVTVELGKLNVACQAYHAGMKISERKDIHHRFLRDEIQCVVATIAFGMGINK 843
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
D+ VIHY P+ +E Y QEIGRAGRDG S CHL + R+ + +++ +
Sbjct: 844 ADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTTRNRLIEIHNEKFRL 903
Query: 549 NKFLCQV 555
+K V
Sbjct: 904 HKLKMMV 910
>UNIPROTKB|O93530 [details] [associations]
symbol:wrn "Werner syndrome ATP-dependent helicase homolog"
species:8355 "Xenopus laevis" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0030145
"manganese ion binding" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030145 GO:GO:0006310
SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 KO:K10900 CTD:7486 HOVERGEN:HBG000325
EMBL:AF067418 PIR:T14895 RefSeq:NP_001081838.1 UniGene:Xl.404
ProteinModelPortal:O93530 SMR:O93530 GeneID:398079 KEGG:xla:398079
Xenbase:XB-GENE-992879 Uniprot:O93530
Length = 1436
Score = 428 (155.7 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 118/375 (31%), Positives = 191/375 (50%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVL-DKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L+ +G+ SF+ Q + + VL +++ ++V+ TG GKSLCYQ + G+ +V+CPL+
Sbjct: 481 LKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICPLI 540
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA--DFLS 308
+LM DQ+ L I FL S+Q + + ++ G ++V++++PE F + L
Sbjct: 541 SLMEDQVLQLEMSNISSCFLGSAQSKNVLQD----VKDGKMRVIYMTPE-FCSRGISLLQ 595
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
I+L+ +DEAHC+SEW H+FR +Y NV I+A+
Sbjct: 596 DLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLP-NVP-IVALTATASPSIRE 653
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNN-----RQNERSAYVDEVFSFHRSSKHY 423
D+ +L + + + R NL L V+ N RQ + F ++ Y
Sbjct: 654 DITKSLNLHNPQVTCTSFDRPNLYLDVARKTTNISIDLRQFLIKKQQGSGWEFEGATIVY 713
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
+ + + +LI I+ +YH+G+ K R + F ++I VVATVAFG
Sbjct: 714 CPTRKTSEQVTAELIKL-----GIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFG 768
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCH-LFLD-DITYFR-LRSLMYS 540
MG++K D+ VIHY P+ +E Y QEIGRAGRDG S CH L+ D+ + R + + +
Sbjct: 769 MGINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHMLGEIPN 828
Query: 541 DGVDEYAINKFLCQV 555
G EY + K L ++
Sbjct: 829 KGFREYKL-KMLTKM 842
Score = 38 (18.4 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 658 TIDVSNQLLNLKMRGEITYELKDP 681
+ DV L +M+ ITY +K P
Sbjct: 1248 SFDVQRAGLTPEMKKLITYAIKKP 1271
>UNIPROTKB|E2RDN3 [details] [associations]
symbol:E2RDN3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 PROSITE:PS50158 SMART:SM00343
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 GO:GO:0008026
OMA:DMPEEAI EMBL:AAEX03008976 EMBL:AAEX03008977 EMBL:AAEX03008978
Ensembl:ENSCAFT00000002463 Uniprot:E2RDN3
Length = 1163
Score = 321 (118.1 bits), Expect = 1.7e-33, Sum P(4) = 1.7e-33
Identities = 74/206 (35%), Positives = 110/206 (53%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR Q + + VL ST+LVLPTGAGKSLCYQ+PA++ P LTLV+ PL++L
Sbjct: 490 GHRAFRPRQEQVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYARRSPCLTLVISPLLSL 549
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQ+ LPP + G + S ++ ++ + +++L +SPE + A
Sbjct: 550 MDDQVSSLPPCLKGVCIHSGMSQKQRESALQKVHAAQVQLLVLSPETLVGAGAGMPGHLP 609
Query: 314 SL--ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVM 371
L ++ +DEAHC+S+WSHNFRP Y+ V C L + RDV
Sbjct: 610 QLPPVAFACIDEAHCISQWSHNFRPCYLRVCKVLREHM-GVRCFLGLTATATRSTARDVA 668
Query: 372 SALEIPLSNLIQ-KAQLRDNLQLSVS 396
L + +++ A + NL LSVS
Sbjct: 669 RHLGVAEELVLRGPATVPSNLHLSVS 694
Score = 92 (37.4 bits), Expect = 1.7e-33, Sum P(4) = 1.7e-33
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 772 LRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
+R D+ L S + +F+ RAVARI HGI SP YP+ ++ +
Sbjct: 1094 VRQDVHRLLSSWPDQQFSGRAVARIFHGIGSPRYPAQVYGR 1134
Score = 80 (33.2 bits), Expect = 1.7e-33, Sum P(4) = 1.7e-33
Identities = 30/99 (30%), Positives = 48/99 (48%)
Query: 564 GKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH--KTTPTL 621
G +L ++ D+ EE + TLL LEL ++LQLLP C L+ T
Sbjct: 854 GHTRALPMQALVEALDMPEEAIETLLCYLELHPQRWLQLLPPTYAQCRLHCPGGPTQLQA 913
Query: 622 LADKDKMVATILKK--SETKQG---QYVFDIPTVANSIG 655
LA + ++A L + ++T G FD+ +A+S+G
Sbjct: 914 LARRCPLLAVCLAQQPADTTDGGSSSVEFDVFNLADSLG 952
Score = 48 (22.0 bits), Expect = 1.7e-33, Sum P(4) = 1.7e-33
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 132 EGNFVRLNLNNNKRKFANKGKRNKSFRGKL 161
+GN+VRLNL KR +R + R ++
Sbjct: 326 QGNYVRLNLKQ-KRYVRGPAQRGRLLRKQM 354
>ZFIN|ZDB-GENE-070702-2 [details] [associations]
symbol:wrn "Werner syndrome" species:7955 "Danio
rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
Length = 1436
Score = 270 (100.1 bits), Expect = 8.5e-31, Sum P(3) = 8.5e-31
Identities = 87/302 (28%), Positives = 152/302 (50%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVL-DKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
+ L++ +G+ SF+ Q + I+ +L +++ ++V+ TG GKSLC+Q P + +++V+ P
Sbjct: 433 KCLKMFFGHHSFKPVQWKVIQSILTERRDNLVVMATGYGKSLCFQFPPVYCQTISVVISP 492
Query: 250 LVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL--NADF 306
L+ALM DQ+ L I FL S+Q + + E ++ G +V++++PE F N
Sbjct: 493 LIALMEDQVLQLTMSNIPACFLGSAQT-KNLNEQVKR---GDFRVVYMTPE-FCSGNIPL 547
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECI--LAMXXXXXX 364
L T +SL+ VDEAHC+S+W H+FR +Y N+ + LA+
Sbjct: 548 LVQLDRTVGLSLIAVDEAHCISQWGHDFRSAYRELGKLKK----NLPTVPFLALTATASP 603
Query: 365 XXLRDVMSALEIPLSNLIQKAQL-RDNLQLSVSL-SGNNRQNERSAYVDEV---FSFHRS 419
D++ +L + ++ +I R NL L V+ SG+ Q+ + V + + F S
Sbjct: 604 SIRDDIIKSLHL-INPMITCTSFDRPNLYLDVNRKSGDVIQDLKRFLVKKKGGGYEFEGS 662
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
+ I+ K E + ++ L I YH+G+ K R Q F ++I+V
Sbjct: 663 A----IVYCPSKK-EAERVTTALFKLDIPCGVYHAGLSIKQRRETQHQFMRDEIQVHAYD 717
Query: 480 VA 481
VA
Sbjct: 718 VA 719
Score = 171 (65.3 bits), Expect = 8.5e-31, Sum P(3) = 8.5e-31
Identities = 32/49 (65%), Positives = 38/49 (77%)
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
VVATVAFGMG++K D+ VIHY P+ +E Y QEIGRAGRDG S CH+
Sbjct: 770 VVATVAFGMGINKSDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSACHV 818
Score = 39 (18.8 bits), Expect = 8.5e-31, Sum P(3) = 8.5e-31
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 695 CALSAHLTKWLSEVENCKVRKL 716
C ++ WLS+ E+ K R+L
Sbjct: 989 CKITTKGRSWLSKAEDEKHRQL 1010
>FB|FBgn0027375 [details] [associations]
symbol:RecQ5 "homolog of RecQ" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA;IMP] [GO:0045930 "negative regulation of
mitotic cell cycle" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IDA] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0090007 "regulation of
mitotic anaphase" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
GO:GO:0005634 GO:GO:0003924 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045002 GO:GO:0045930
TIGRFAMs:TIGR00614 GO:GO:0090007 GO:GO:0017116 HSSP:P15043
FlyBase:FBgn0027375 EMBL:AB031086 ProteinModelPortal:Q9U5E0
PRIDE:Q9U5E0 InParanoid:Q9U5E0 ArrayExpress:Q9U5E0 Bgee:Q9U5E0
Uniprot:Q9U5E0
Length = 1058
Score = 236 (88.1 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 54/157 (34%), Positives = 92/157 (58%)
Query: 193 LRLVYGYDSFR-DGQLEAIKMVLDKKSTMLV-LPTGAGKSLCYQIPAMILPG-LTLVVCP 249
L+ +G+ F+ D Q +A+K + KK + V +PTG+GKSLC+Q+P ++ +T+V P
Sbjct: 11 LKKHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSENQITIVFSP 70
Query: 250 LVALMIDQLRHLPPV-IHGGFLSSSQRPEE---VAETIRLIQVGAIKVLFVSPERFLNA- 304
L+AL+ DQ+ HL + + L+S +E V ++ ++ +K L+++PE+
Sbjct: 71 LLALIKDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTN-LKFLYITPEQAATKF 129
Query: 305 --DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYM 339
D L + ++ VDEAHCVS+W H+FRP Y+
Sbjct: 130 FQDLLQTLHKHNKLAYFAVDEAHCVSQWGHDFRPDYL 166
Score = 189 (71.6 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 37/95 (38%), Positives = 57/95 (60%)
Query: 447 ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY 506
I +YH+G+ +R+ +QE + ++ AT +FGMG+DK V VIH+ +P+++ Y
Sbjct: 281 IGAVAYHAGLKTGERTEVQEAWMRGDQPIICATNSFGMGVDKPSVRFVIHWDVPQNVAAY 340
Query: 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541
QE GRAGRDG SYC L+ +R L+ +D
Sbjct: 341 YQESGRAGRDGLQSYCRLYYGREDVRSIRFLLQND 375
Score = 40 (19.1 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 611 TLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATT 658
+LN KT +L + + + + +K K G+ + A+SIG T+
Sbjct: 822 SLNCFKTARQMLEENNAKLKGVPEKLPIKDGEKGV-LENRADSIGFTS 868
>UNIPROTKB|Q6P4G0 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:CH471099 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AC087749 HOGENOM:HOG000044388
IPI:IPI01015246 UniGene:Hs.632229 HGNC:HGNC:9950 HOVERGEN:HBG057065
ChiTaRS:RECQL5 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:BC063440 IPI:IPI00185769 ProteinModelPortal:Q6P4G0
STRING:Q6P4G0 PRIDE:Q6P4G0 Ensembl:ENST00000423245 UCSC:uc010dgk.3
ArrayExpress:Q6P4G0 Bgee:Q6P4G0 Uniprot:Q6P4G0
Length = 964
Score = 351 (128.6 bits), Expect = 4.6e-29, Sum P(2) = 4.6e-29
Identities = 95/303 (31%), Positives = 154/303 (50%)
Query: 239 ILPGLTLVVCPLVALMIDQLRHLPPV-IH----GGFLSSSQRPEEVAETIRLIQVGAIKV 293
++ G+T+VV PL+AL+ DQ+ HL + + LS+ +R E +A+ R + K+
Sbjct: 41 VVKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLER--EKPQTKI 98
Query: 294 LFVSPERFLNADF---LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXX 350
L+++PE ++ F L+ + L+S +VVDEAHCVS+W H+FRP Y+
Sbjct: 99 LYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLG- 157
Query: 351 NVECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQ-LRDNLQLSVSLS-------GNNR 402
+ C+ A+ DV +AL + I K R NL V GN +
Sbjct: 158 HAPCV-ALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLK 216
Query: 403 QNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS 462
A E + I+ + L C ++ K+YH+G+ A +R+
Sbjct: 217 DFCLKALGQEA---DKGLSGCGIVYCRTREACEQLAIELSC-RGVNAKAYHAGLKASERT 272
Query: 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+Q + K+ V+VAT++FGMG+DK +V V H+++ +S+ Y QE GRAGRDG+ S+C
Sbjct: 273 LVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWC 332
Query: 523 HLF 525
L+
Sbjct: 333 RLY 335
Score = 55 (24.4 bits), Expect = 4.6e-29, Sum P(2) = 4.6e-29
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLP 224
L+ V+G+DSF+ E+ M + K T++V P
Sbjct: 20 LKKVFGFDSFKTPLQESATMAVVKGITIVVSP 51
>ASPGD|ASPL0000072255 [details] [associations]
symbol:recQ species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HOGENOM:HOG000044388 ProteinModelPortal:C8V8Q7
EnsemblFungi:CADANIAT00006022 OMA:ARPNIHY Uniprot:C8V8Q7
Length = 541
Score = 214 (80.4 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 52/139 (37%), Positives = 78/139 (56%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV- 264
Q + I ++ L T GKSLCYQ+PAM G+T+VVCPL++LM DQ+ L +
Sbjct: 10 QRDVIAAAVEGHDVFLQASTSFGKSLCYQLPAMTTHGVTVVVCPLLSLMTDQVNALQALG 69
Query: 265 IHGGFLSSSQRPEEVAETIRLIQVG--AIKVLFVSPERFLNADFL-SIFTATSLISLV-- 319
+ ++S+ E + + G I++L+V+PE N F ++ T LV
Sbjct: 70 VPVATINSTVSLAERRVILEDLLSGHPRIRLLYVTPELCQNNTFRRNLQTMHKQRELVRI 129
Query: 320 VVDEAHCVSEWSHNFRPSY 338
+DEAHC+SEW H+FRP+Y
Sbjct: 130 AIDEAHCISEWGHDFRPAY 148
Score = 168 (64.2 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 41/97 (42%), Positives = 55/97 (56%)
Query: 438 ISRYLC--DNSISVKSYHSGIPAKDRSRIQ-ELFCSNK-------------IRVVVATVA 481
++ LC DN I +YH+G+ A DR R+Q E K ++VAT A
Sbjct: 269 LAHVLCQSDNRIRAVAYHAGLVAADRVRVQNEWIAPQKQPQQRGPGAKPVTFYIIVATTA 328
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
FGMG+D +V V+H+S P + E +VQE GRAGRDGR
Sbjct: 329 FGMGIDNPEVRFVVHWSPPRTFEGFVQESGRAGRDGR 365
Score = 39 (18.8 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 485 GLDKRDVGAVIHYSLPE 501
G D R ++++YSL E
Sbjct: 361 GRDGRAAASIVYYSLQE 377
>UNIPROTKB|F1RMJ3 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 Pfam:PF00270 Pfam:PF08072
PROSITE:PS00690 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:CT757491 Ensembl:ENSSSCT00000002034
Uniprot:F1RMJ3
Length = 541
Score = 263 (97.6 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 58/150 (38%), Positives = 93/150 (62%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G +FR QLEAI L + +++PTG GKSLCYQ+PA + G+T+V+ PL +L++D
Sbjct: 352 FGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSSGVTIVISPLRSLIVD 411
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAET-IRLIQVGAI-KVLFVSPERFLNADFLSIFTAT 313
Q++ L + I +L+ + E ++L + I K+L+V+PE+ ++ L I T
Sbjct: 412 QVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASNRL-ISTLE 470
Query: 314 SL-----ISLVVVDEAHCVSEWSHNFRPSY 338
+L ++ V+DEAHCVS+W H+FRP Y
Sbjct: 471 NLYNRKLLARFVIDEAHCVSQWGHDFRPDY 500
>UNIPROTKB|F8WD97 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI00792775 ProteinModelPortal:F8WD97 SMR:F8WD97
Ensembl:ENST00000396093 ArrayExpress:F8WD97 Bgee:F8WD97
Uniprot:F8WD97
Length = 211
Score = 208 (78.3 bits), Expect = 9.4e-16, P = 9.4e-16
Identities = 49/123 (39%), Positives = 74/123 (60%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+ + FR QLE I + + K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 82 ILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPERFLNAD- 305
+LM DQL L + I L++S E V AE + + +K+++V+PE+ +
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVN--KNSELKLIYVTPEKIAKSKM 199
Query: 306 FLS 308
F+S
Sbjct: 200 FMS 202
>UNIPROTKB|F8WA66 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI01013557 ProteinModelPortal:F8WA66 SMR:F8WA66 PRIDE:F8WA66
Ensembl:ENST00000314748 ArrayExpress:F8WA66 Bgee:F8WA66
Uniprot:F8WA66
Length = 199
Score = 206 (77.6 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 47/114 (41%), Positives = 70/114 (61%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+ + FR QLE I + + K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 82 ILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPER 300
+LM DQL L + I L++S E V AE + + +K+++V+PE+
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVN--KNSELKLIYVTPEK 193
>ASPGD|ASPL0000073665 [details] [associations]
symbol:AN5092 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001303
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GO:GO:0008026 EMBL:AACD01000086 InterPro:IPR022698 Pfam:PF12013
RefSeq:XP_662696.1 ProteinModelPortal:Q5B2Y8
EnsemblFungi:CADANIAT00005288 GeneID:2872891 KEGG:ani:AN5092.2
HOGENOM:HOG000217656 OrthoDB:EOG45XC49 Uniprot:Q5B2Y8
Length = 1571
Score = 156 (60.0 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 35/87 (40%), Positives = 53/87 (60%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D IS C+ + ++YHS + D++ + + F S++ R++ AT A GMG+D D+
Sbjct: 1148 QVDAIS---CE--LGCEAYHSAV--LDQTGVMQRFQSSQTRIIAATSALGMGIDIPDIRC 1200
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLS 520
VIH P +L +Y QE GRAGRDG S
Sbjct: 1201 VIHLGRPRTLLDYSQESGRAGRDGLAS 1227
Score = 125 (49.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 38/140 (27%), Positives = 67/140 (47%)
Query: 203 RDGQLEAIKMVLDKKSTML-VLPTGAGKSLCYQIPAMILPG-LTLVVCPLVALMIDQLRH 260
R Q A+K + D S ++ ++PTG+GKS+ + +PA PG T++V PL++L D +
Sbjct: 917 RGVQAPALKAIQDGASPVVAIMPTGSGKSMLFMLPAYAAPGGCTIMVVPLLSLRADLMMR 976
Query: 261 LPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL---IS 317
+ S+RP + A ++ V+PE N DF + +
Sbjct: 977 CQALGISCVSWESRRPPDEAA-----------IVLVTPESTENPDFHTFLNRQRQMRRLD 1025
Query: 318 LVVVDEAHCVSEWSHNFRPS 337
+V+DE H + +F+P+
Sbjct: 1026 RIVIDECHVILNDQKDFQPA 1045
>UNIPROTKB|Q47ZX4 [details] [associations]
symbol:CPS_2945 "Putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 230 (86.0 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 86/333 (25%), Positives = 141/333 (42%)
Query: 205 GQLEAIKMVLD--KKSTMLV-LPTGAGKSLCYQIPAMILPG--LTLVVCPLVALMIDQLR 259
GQ A+++ L + ST+ + LPTG GK+L + LT+V+ P V L I+Q +
Sbjct: 150 GQRMAVRVALTCPQDSTLFINLPTGCGKTLVAHACMLFSKSKALTIVIVPTVGLAIEQGK 209
Query: 260 HLPPVIHGGFLSSSQR--------PEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
++ S Q E +E I KV+F SPE + +F
Sbjct: 210 RAKELLEKADSDSVQNYAWHGQLSDGEKSEIRDNIDNDKQKVIFTSPESVTGSLLPLLFR 269
Query: 312 ATSLISL--VVVDEAHCVSEWSHNFRPSYMXXXXXXXXXX--XNVECILAMXXXXXXXXL 367
S+ +++DEAH + W NFR + N +
Sbjct: 270 LAKQNSIANIIIDEAHLIDTWGSNFRSEFQRFGALVASLRQVSNSPFKTILMSATFTQSN 329
Query: 368 RDVMSALEIPLSN---LIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
++ L N ++ LR + S G N N + V V + + Y
Sbjct: 330 IGSLTTLYCESDNKPIVVNGNFLRPEISSSYKNEGEN--NHLQSVVGRVIALPKPLILYT 387
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
L L + L N I++ ++ + R +I E + + + +++AT AFG+
Sbjct: 388 TLVQDSIDLSCHLKAIGL--NRIAL--FNGKTDIRSREKIIEQWQKDDLDIIIATSAFGV 443
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G+DK +V +VIH +P++++ Y QEIGRAGRDG
Sbjct: 444 GMDKSNVKSVIHACIPDNIDRYYQEIGRAGRDG 476
Score = 37 (18.1 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 77 KPSLRFENDQSLPTPSNPQGINEIKSDAFAKK-KKQINLVSVDVPL 121
K L ++ + T S P +++ D + +K K+++ V +D+ L
Sbjct: 90 KAMLNYQVGSNFLTLSTPV-VSQKLMDVYEQKQKRKVKKVEMDLAL 134
>TIGR_CMR|CPS_2945 [details] [associations]
symbol:CPS_2945 "putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 230 (86.0 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 86/333 (25%), Positives = 141/333 (42%)
Query: 205 GQLEAIKMVLD--KKSTMLV-LPTGAGKSLCYQIPAMILPG--LTLVVCPLVALMIDQLR 259
GQ A+++ L + ST+ + LPTG GK+L + LT+V+ P V L I+Q +
Sbjct: 150 GQRMAVRVALTCPQDSTLFINLPTGCGKTLVAHACMLFSKSKALTIVIVPTVGLAIEQGK 209
Query: 260 HLPPVIHGGFLSSSQR--------PEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
++ S Q E +E I KV+F SPE + +F
Sbjct: 210 RAKELLEKADSDSVQNYAWHGQLSDGEKSEIRDNIDNDKQKVIFTSPESVTGSLLPLLFR 269
Query: 312 ATSLISL--VVVDEAHCVSEWSHNFRPSYMXXXXXXXXXX--XNVECILAMXXXXXXXXL 367
S+ +++DEAH + W NFR + N +
Sbjct: 270 LAKQNSIANIIIDEAHLIDTWGSNFRSEFQRFGALVASLRQVSNSPFKTILMSATFTQSN 329
Query: 368 RDVMSALEIPLSN---LIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
++ L N ++ LR + S G N N + V V + + Y
Sbjct: 330 IGSLTTLYCESDNKPIVVNGNFLRPEISSSYKNEGEN--NHLQSVVGRVIALPKPLILYT 387
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
L L + L N I++ ++ + R +I E + + + +++AT AFG+
Sbjct: 388 TLVQDSIDLSCHLKAIGL--NRIAL--FNGKTDIRSREKIIEQWQKDDLDIIIATSAFGV 443
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G+DK +V +VIH +P++++ Y QEIGRAGRDG
Sbjct: 444 GMDKSNVKSVIHACIPDNIDRYYQEIGRAGRDG 476
Score = 37 (18.1 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 77 KPSLRFENDQSLPTPSNPQGINEIKSDAFAKK-KKQINLVSVDVPL 121
K L ++ + T S P +++ D + +K K+++ V +D+ L
Sbjct: 90 KAMLNYQVGSNFLTLSTPV-VSQKLMDVYEQKQKRKVKKVEMDLAL 134
>POMBASE|SPBCPT2R1.08c [details] [associations]
symbol:tlh2 "RecQ type DNA helicase Tlh1" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 PomBase:SPBCPT2R1.08c
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000722 HOGENOM:HOG000213224 OrthoDB:EOG4XH37R
EMBL:BX784043 RefSeq:XP_001713158.1 ProteinModelPortal:Q1RKN3
EnsemblFungi:SPBCPT2R1.08c.1 GeneID:5802845 KEGG:spo:SPBCPT2R1.08c
NextBio:20892152 Uniprot:Q1RKN3
Length = 1919
Score = 220 (82.5 bits), Expect = 7.8e-14, P = 7.8e-14
Identities = 101/385 (26%), Positives = 166/385 (43%)
Query: 197 YGYDS-FRD-GQLEAIKM-VLDKKSTMLVLPTGAGKSLCYQIPAMI-----LPG-----L 243
YG ++ FR Q +++ +L++ + + VLPTG GKSL + IPA+I PG +
Sbjct: 1184 YGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMV 1243
Query: 244 TLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFV-SPERFL 302
TLV+ P+++L D + V G L S + +RL + LF+ + E L
Sbjct: 1244 TLVLVPMMSLRQDMMLR---VNEKGLLVCSGNWTAFKD-VRLTLETQLPDLFILTYESAL 1299
Query: 303 NADFLSIFTATSLI---SLVVVDEAHCV---SEW----SHNFRPS--YMXXXXXXXXXXX 350
L F + + + + VV+DEAH + W S R S Y
Sbjct: 1300 TNSGLRFFESLATLGRLARVVIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPR 1359
Query: 351 NVECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV 410
+E + LR+ +A E N+ DN + + L ++ +
Sbjct: 1360 QLEMVARQTFCTNFYVLRETSTARE----NIFYFLHPYDNTEFLLDLRTLMKRTKVFEGD 1415
Query: 411 DEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELF-- 468
F R+ K + I + ++DL + V Y + ++R + F
Sbjct: 1416 GRAIIFCRTKKD--VEYIHRRLHQSDLFAH------THVTIYTGDVSDEERQMNFDAFRN 1467
Query: 469 CSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
+ K R+++AT AFG+G++ V V+HY LP S +YVQE GRAGRDG+ + LF +
Sbjct: 1468 ANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEK 1527
Query: 529 ITYFRLRSLMYSDGVDEYAINKFLC 553
Y S D + + + +C
Sbjct: 1528 --YDSTWSSYVEDSMKNFLNDNTMC 1550
>POMBASE|SPAC212.11 [details] [associations]
symbol:tlh1 "RecQ type DNA helicase" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004695 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF03595 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 PomBase:SPBCPT2R1.08c GO:GO:0016021 GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0055085 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000781
GO:GO:0000722 eggNOG:COG0514 EMBL:BK005597
ProteinModelPortal:Q5EAK4 TCDB:2.A.16.2.2 HOGENOM:HOG000213224
OrthoDB:EOG4XH37R NextBio:20892297 Uniprot:Q5EAK4
Length = 2100
Score = 220 (82.5 bits), Expect = 8.7e-14, P = 8.7e-14
Identities = 101/385 (26%), Positives = 166/385 (43%)
Query: 197 YGYDS-FRD-GQLEAIKM-VLDKKSTMLVLPTGAGKSLCYQIPAMI-----LPG-----L 243
YG ++ FR Q +++ +L++ + + VLPTG GKSL + IPA+I PG +
Sbjct: 1365 YGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMV 1424
Query: 244 TLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFV-SPERFL 302
TLV+ P+++L D + V G L S + +RL + LF+ + E L
Sbjct: 1425 TLVLVPMMSLRQDMMLR---VNEKGLLVCSGNWTAFKD-VRLTLETQLPDLFILTYESAL 1480
Query: 303 NADFLSIFTATSLI---SLVVVDEAHCV---SEW----SHNFRPS--YMXXXXXXXXXXX 350
L F + + + + VV+DEAH + W S R S Y
Sbjct: 1481 TNSGLRFFESLATLGRLARVVIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPR 1540
Query: 351 NVECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV 410
+E + LR+ +A E N+ DN + + L ++ +
Sbjct: 1541 QLEMVARQTFCTNFYVLRETSTARE----NIFYFLHPYDNTEFLLDLRTLMKRTKVFEGD 1596
Query: 411 DEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELF-- 468
F R+ K + I + ++DL + V Y + ++R + F
Sbjct: 1597 GRAIIFCRTKKD--VEYIHRRLHQSDLFAH------THVTIYTGDVSDEERQMNFDAFRN 1648
Query: 469 CSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
+ K R+++AT AFG+G++ V V+HY LP S +YVQE GRAGRDG+ + LF +
Sbjct: 1649 ANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEK 1708
Query: 529 ITYFRLRSLMYSDGVDEYAINKFLC 553
Y S D + + + +C
Sbjct: 1709 --YDSTWSSYVEDSMKNFLNDNTMC 1731
>UNIPROTKB|F1RMJ2 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR018982 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0043140 GeneTree:ENSGT00550000074520
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:CT757491
Ensembl:ENSSSCT00000002035 OMA:REMTENT Uniprot:F1RMJ2
Length = 511
Score = 211 (79.3 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 45/101 (44%), Positives = 63/101 (62%)
Query: 445 NSISVKSYHSGIPAKDRSRIQELFCSNK-IRVVVATVAFGMGLDKRDVGAVIHYSLPESL 503
+ ++ +YH+G+ R +Q + + +V+ AT+AFGMG+DK DV VIH SLP+S+
Sbjct: 8 DGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSV 67
Query: 504 EEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRSLMYSDG 542
E Y QE GRAGRDG +S C LF D+T + LM DG
Sbjct: 68 EGYYQESGRAGRDGEISQCLLFYTYHDVTRLKRLILMEKDG 108
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 174 (66.3 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 39/118 (33%), Positives = 63/118 (53%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F RV+++T + G+D + V
Sbjct: 276 KVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL 335
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR+GR GR F+ DD+ R L YS +DE +N
Sbjct: 336 VINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMN 393
Score = 66 (28.3 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 39/146 (26%), Positives = 63/146 (43%)
Query: 192 LLRLVY--GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y GY+S Q AI + + T+ +G GK+ + I A+ + + VV
Sbjct: 36 LLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQV--IDTVVRE 93
Query: 250 LVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIKVLFVSPE 299
AL++ R L I G +++ + E IR + G V+ +P
Sbjct: 94 TQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQ-HVVSGTPG 152
Query: 300 RFLNADFLSI-FTATSLISLVVVDEA 324
R AD + T I ++V+DEA
Sbjct: 153 RV--ADMIRRRHLRTRHIKMLVLDEA 176
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 179 (68.1 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 40/118 (33%), Positives = 65/118 (55%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D +++ + +++ +V H+G+ +R I F K RV+++T +G GLD ++V
Sbjct: 268 KVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDIWGRGLDVQEVSL 327
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
V++Y LP S E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 328 VVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMN 385
Score = 58 (25.5 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 187 ENLG---RLLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
EN+G LLR +Y Y + ++ IK +L+ + +L +G GK+ + + A+
Sbjct: 20 ENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGAL 76
Score = 37 (18.1 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 270 LSSSQRPEEVAETIRLIQVGAIKVL 294
LSS+ P+EV E +K+L
Sbjct: 195 LSSATLPQEVLEITNKFMHKPVKIL 219
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 179 (68.1 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 40/118 (33%), Positives = 65/118 (55%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D +++ + +++ +V H+G+ +R I F K RV+++T +G GLD ++V
Sbjct: 268 KVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVLISTDIWGRGLDVQEVSL 327
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
V++Y LP S E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 328 VVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMN 385
Score = 58 (25.5 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 187 ENLG---RLLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
EN+G LLR +Y Y + ++ IK +L+ + +L +G GK+ + + A+
Sbjct: 20 ENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGAL 76
Score = 37 (18.1 bits), Expect = 8.7e-12, Sum P(3) = 8.7e-12
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 270 LSSSQRPEEVAETIRLIQVGAIKVL 294
LSS+ P+EV E +K+L
Sbjct: 195 LSSATLPQEVLEITNKFMHKPVKIL 219
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 171 (65.3 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 289 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 348
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 406
Score = 66 (28.3 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 192 LLRLVYGYDSFRDG--QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y G Q I +V+ + +++ +G GK+ + I +L L + V
Sbjct: 49 LLRGIYAYGRPEPGAFQQRKILVVMKSNNAVVISQSGTGKTATFSIS--VLQCLDIQVRE 106
Query: 250 LVALMIDQLRHLPPVIHGGFLS 271
AL++ R L I G L+
Sbjct: 107 TQALILAPTRELAVQIQKGLLA 128
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 171 (65.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 285 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 344
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 345 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 402
Score = 65 (27.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + ++ AIK ++ + + +G GK+ + I +L L + V
Sbjct: 50 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 107
Query: 250 LVALMIDQLRHLPPVIHGGFLSSSQRP 276
AL++ R L I L++ + P
Sbjct: 108 TQALILAPTRELAVQIQKSLLATGEVP 134
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 171 (65.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 289 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 348
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 406
Score = 64 (27.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + ++ AIK ++ + + +G GK+ + I +L L + V
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 106
Query: 250 LVALMIDQLRHLPPVIHGGFLS 271
AL++ R L I G L+
Sbjct: 107 TQALILAPTRELAVQIQKGLLA 128
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 171 (65.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 289 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 348
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 406
Score = 64 (27.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + ++ AIK ++ + + +G GK+ + I +L L + V
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 106
Query: 250 LVALMIDQLRHLPPVIHGGFLS 271
AL++ R L I G L+
Sbjct: 107 TQALILAPTRELAVQIQKGLLA 128
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 171 (65.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 289 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 348
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 406
Score = 64 (27.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + ++ AIK ++ + + +G GK+ + I +L L + V
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 106
Query: 250 LVALMIDQLRHLPPVIHGGFLS 271
AL++ R L I G L+
Sbjct: 107 TQALILAPTRELAVQIQKGLLA 128
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 171 (65.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 289 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 348
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 406
Score = 64 (27.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + ++ AIK ++ + + +G GK+ + I +L L + V
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 106
Query: 250 LVALMIDQLRHLPPVIHGGFLS 271
AL++ R L I G L+
Sbjct: 107 TQALILAPTRELAVQIQKGLLA 128
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 171 (65.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 289 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 348
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 406
Score = 64 (27.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + ++ AIK ++ + + +G GK+ + I +L L + V
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 106
Query: 250 LVALMIDQLRHLPPVIHGGFLS 271
AL++ R L I G L+
Sbjct: 107 TQALILAPTRELAVQIQKGLLA 128
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 171 (65.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 290 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 349
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 350 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 407
Score = 64 (27.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + ++ AIK ++ + + +G GK+ + I +L L + V
Sbjct: 50 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 107
Query: 250 LVALMIDQLRHLPPVIHGGFLS 271
AL++ R L I G L+
Sbjct: 108 TQALILAPTRELAVQIQKGLLA 129
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 171 (65.3 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 292 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 351
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 352 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 409
Score = 56 (24.8 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + ++ AIK ++ + + +G GK+ + I +L L + V
Sbjct: 51 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 108
Query: 250 LVALMIDQLRHL 261
AL++ R L
Sbjct: 109 TQALILAPTREL 120
Score = 37 (18.1 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 286 IQVGAIKVLFVSPERFLNADFLSIFTATSL 315
IQV + L ++P R L + T+ SL
Sbjct: 104 IQVRETQALILAPTRELAVQIQKVGTSKSL 133
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 185 (70.2 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 92/335 (27%), Positives = 144/335 (42%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI-------------LPGLTLVVCPLVA 252
Q +A +VL + V TG GK+LCY +P I PG+ LV+ P
Sbjct: 269 QSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGM-LVLTPTRE 327
Query: 253 LMIDQLRHLPPVIHGGFLS-----SSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
L + + G S R E++ E ++ G + ++ +P R LN +
Sbjct: 328 LALQVEGECCKYSYKGLRSVCVYGGGNRDEQIEE----LKKG-VDIIIATPGR-LNDLQM 381
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXL 367
S F I+ +V+DEA + + F P M V M +
Sbjct: 382 SNFVNLKNITYLVLDEADKMLDMG--FEPQIMKILLDVRPDRQTV-----MTSATWPHSV 434
Query: 368 -RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGN---NRQNERSAYVDEVFSFHRSSKHY 423
R S L+ P+ ++ L D + +S S+ N + E+ +++ + F SS
Sbjct: 435 HRLAQSYLKEPM--IVYVGTL-DLVAVS-SVKQNIIVTTEEEKWSHM-QTFLQSMSSTDK 489
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I+ +S K L S + N ISV+S H +DR + E F + K+R+++AT
Sbjct: 490 VIVFVSRKAVADHLSSDLILGN-ISVESLHGDREQRDREKALENFKTGKVRILIATDLAS 548
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
GLD DV V ++ P ++EEYV IGR GR GR
Sbjct: 549 RGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGR 583
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 185 (70.2 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 85/331 (25%), Positives = 138/331 (41%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-------------PGLTLVVCPLVA 252
Q +A +VL+ + + TG GK+L Y +P I PG+ LV+ P
Sbjct: 305 QSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPMPRDKRNGPGM-LVLTPTRE 363
Query: 253 LMIDQLRHLPPVIHGGFLSSS-QRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L + + GF S + I+++ G + ++ +P R + +
Sbjct: 364 LALQIEAECNKYSYKGFKSICIYGGGDRNAQIKVVTSG-VDIVIATPGRLNDLQMNELIN 422
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVM 371
S I+ +V+DEA + + F P M V M +R +
Sbjct: 423 LRS-ITYLVLDEADRMLDMG--FEPQIMKIILDIRPDRQTV-----MTSATWPPGVRRLA 474
Query: 372 -SALEIPLSNLIQKAQLR--DNLQLSVSLSGNNRQNERSAYVDEVFSF-HRSSKHYYILQ 427
S L+ P+ + L + +Q +V +++E+ YV F F HR +L
Sbjct: 475 KSYLKDPMMVYVGTLDLAAVNTVQQTVLFV---QEDEKKDYV---FDFIHRMEPLDKVLI 528
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
GK + D +S LC I+V+S H DR + F ++R++VAT GLD
Sbjct: 529 FVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVATDLASRGLD 588
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
D+ V +Y P ++EEYV +GR GR GR
Sbjct: 589 VHDITHVFNYDFPRNVEEYVHRVGRTGRAGR 619
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 172 (65.6 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 40/118 (33%), Positives = 62/118 (52%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 284 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSL 343
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 344 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 401
Score = 53 (23.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 34/145 (23%), Positives = 60/145 (41%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + ++ AIK ++ + + +G GK+ + + +L L + V
Sbjct: 44 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVS--VLQCLDIQVRE 101
Query: 250 LVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIKVLFVSPE 299
AL++ R L I G +++ V E IR + G V+ +P
Sbjct: 102 TQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPG 160
Query: 300 RFLNADFLSIFTATSLISLVVVDEA 324
R + T I ++V+DEA
Sbjct: 161 RVFDM-IRRRSLRTRAIKMLVLDEA 184
>WB|WBGene00011032 [details] [associations]
symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
Length = 581
Score = 165 (63.1 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 47/143 (32%), Positives = 72/143 (50%)
Query: 444 DNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESL 503
D+++ V S +SG K+R E F +I V+V T G GLD DVG VI+Y LP S+
Sbjct: 397 DSNLKVDSINSGKSDKERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSI 456
Query: 504 EEYVQEIGRAGRDGRLSYC-HLFLD-DITYFR-LRSLMYSDGVD--EYAIN-KFLCQVFT 557
Y+ +GR GR G+ + F D D+ Y + + +++ G D EY + K + +
Sbjct: 457 VSYIHRVGRTGRAGKSGHAVTYFTDADMKYIKSIATVIRQSGFDVPEYLMEMKKVSRDRK 516
Query: 558 NGMNSHGKL---CSLVKESASRK 577
M H ++VKE +K
Sbjct: 517 KDMLKHAPKRHKIAIVKEQVIKK 539
Score = 65 (27.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 9/33 (27%), Positives = 23/33 (69%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q+++I + ++++ + PTG+GK+L + +P +
Sbjct: 153 QMQSIPFMTERRNVLASAPTGSGKTLAFALPVI 185
Score = 45 (20.9 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 186 DENLGRLLRLVYGYDS-FRDGQLEAIKMVLDKKST 219
DE+ RL +V G D FR+ QL AI D K T
Sbjct: 276 DES-DRLFEVVEGQDKCFRN-QLAAIYKACDAKCT 308
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 176 (67.0 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 41/118 (34%), Positives = 61/118 (51%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D +S + ++ +V S H +P K+R I F S RV++ T + G+D + V
Sbjct: 286 KVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSL 345
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 346 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMN 403
Score = 47 (21.6 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 28/137 (20%), Positives = 56/137 (40%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGK------SLCYQIPAMILPGLTLVVCPL 250
YG++ Q A+ +L + + +G GK S+C + L++ P
Sbjct: 53 YGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPT 112
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQ-RPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
L + + + +H + + V E IR ++ G + V+ +P R D +
Sbjct: 113 RELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHG-VHVVSGTPGRV--CDMIK 169
Query: 309 IFTA-TSLISLVVVDEA 324
+ T I L+++DE+
Sbjct: 170 RRSLRTRAIKLLILDES 186
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 163 (62.4 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H + KDR + + F + RV+++T + GLD V
Sbjct: 277 KVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSL 336
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR+GR GR F+ DD+ R YS +DE +N
Sbjct: 337 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQYYSTQIDEMPMN 394
Score = 55 (24.4 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + ++ AI +L + + +G GK+ + I +L L V
Sbjct: 37 LLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSIS--VLQSLDTQVRE 94
Query: 250 LVALMIDQLRHL 261
AL++ R L
Sbjct: 95 TQALILSPTREL 106
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 162 (62.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 37/118 (31%), Positives = 61/118 (51%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F RV++ T + G+D + V
Sbjct: 272 KVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSL 331
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR+GR GR F+ +D+ R YS +DE +N
Sbjct: 332 VINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMPMN 389
Score = 55 (24.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 192 LLRLVY--GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y GY++ Q AI + + + +G GK+ + I IL + L V
Sbjct: 32 LLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIG--ILQSIDLSVRD 89
Query: 250 LVALMIDQLRHL 261
AL++ R L
Sbjct: 90 TQALILSPTREL 101
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 163 (62.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H + KDR + + F + RV+++T + GLD V
Sbjct: 277 KVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSL 336
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR+GR GR F+ DD+ R YS +DE +N
Sbjct: 337 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQYYSTQIDEMPMN 394
Score = 54 (24.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + ++ A+ +L + + +G GK+ + I +L L V
Sbjct: 37 LLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSIS--VLQSLDTQVRE 94
Query: 250 LVALMIDQLRHL 261
AL++ R L
Sbjct: 95 TQALILSPTREL 106
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 174 (66.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 39/118 (33%), Positives = 63/118 (53%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F + + RV++ T + G+D + V
Sbjct: 277 KVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSL 336
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 337 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPVN 394
Score = 41 (19.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 16/72 (22%), Positives = 30/72 (41%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + ++ +I ++ + + +G GK+ + I IL L +
Sbjct: 37 LLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSIS--ILQSLDTTLRE 94
Query: 250 LVALMIDQLRHL 261
L + R L
Sbjct: 95 TQVLCLSPTREL 106
>UNIPROTKB|J3KSL7 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00690 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000580078
Uniprot:J3KSL7
Length = 198
Score = 149 (57.5 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 40/126 (31%), Positives = 63/126 (50%)
Query: 270 LSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF---LSIFTATSLISLVVVDEAHC 326
LS+ +R E +A+ R + K+L+++PE ++ F L+ + L+S +VVDEAHC
Sbjct: 8 LSAQERKELLADLER--EKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHC 65
Query: 327 VSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQ 386
VS+W H+FRP Y+ + C+ A+ DV +AL + I K
Sbjct: 66 VSQWGHDFRPDYLRLGALRSRLG-HAPCV-ALTATATPQVQEDVFAALHLKKPVAIFKTP 123
Query: 387 -LRDNL 391
R NL
Sbjct: 124 CFRANL 129
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 157 (60.3 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 35/118 (29%), Positives = 62/118 (52%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D +S+ L ++ +V S H + ++R ++ F + RV+++T + G+D + V
Sbjct: 277 KVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSL 336
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVDEYAIN 549
VI+Y LPE +E Y+ IGR+GR GR F+ +LR + YS ++ N
Sbjct: 337 VINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFYSIKINPMPAN 394
Score = 56 (24.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 192 LLRLVY--GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y G+++ Q AI ++ K + +G GK+ + I +L + L
Sbjct: 34 LLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIG--LLQAIDLRKKD 91
Query: 250 LVALMIDQLRHL 261
L AL++ R L
Sbjct: 92 LQALILSPTREL 103
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 161 (61.7 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 39/118 (33%), Positives = 59/118 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + D + +V S H + K+R I + F S + RV++ T G+D + V
Sbjct: 283 KVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSL 342
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
VI+Y LP E Y+ IGR+GR GR F+ DI R YS +DE +N
Sbjct: 343 VINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDIEQFYSTQIDEMPVN 400
Score = 51 (23.0 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 35/154 (22%), Positives = 72/154 (46%)
Query: 187 ENLG---RLLRLV--YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP 241
E++G LLR + YG++ Q AI ++ + T+ +G GK+ + I A+
Sbjct: 35 ESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCV 94
Query: 242 GLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQ----------RPEEVAETIRLIQVGAI 291
+ V P V L++ R L I L+ S+ + +++ ++ ++ G +
Sbjct: 95 EVN-VRSPQV-LILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLETG-V 151
Query: 292 KVLFVSPERFLNADFLSIFTA-TSLISLVVVDEA 324
++ +P R L D ++ + T I ++++DEA
Sbjct: 152 HIVSGTPGRVL--DMITRKSLPTRHIKMMILDEA 183
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 128 (50.1 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 34/105 (32%), Positives = 57/105 (54%)
Query: 448 SVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYV 507
+ K H + ++R++ + F + K ++VAT GLD DV VI++ +P++ E Y+
Sbjct: 265 AAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYI 324
Query: 508 QEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFL 552
IGR GR GR ++ +R R L+ + ++E AINK L
Sbjct: 325 HRIGRTGRAGREGKAITLIN----YRERKLLKA--IEE-AINKRL 362
Score = 86 (35.3 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 40/143 (27%), Positives = 70/143 (48%)
Query: 192 LLRLV--YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--ILPGL---T 244
LL+ V G++ Q EAI ++L+ + + PTG GK+ Y +P + I G
Sbjct: 13 LLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQV 72
Query: 245 LVVCPL--VALMI-DQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
L+V P +AL + D++ L + L+ + + IR ++ G ++V+ +P R
Sbjct: 73 LIVTPTRELALQVADEVAKLGKYLKVRALAV-YGGQAIERQIRGLRQG-VEVIVGTPGRI 130
Query: 302 LNADFLSIFTATSLISLVVVDEA 324
L+ F A I +V++DEA
Sbjct: 131 LDHIGRKTFPAAE-IKIVILDEA 152
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 128 (50.1 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 34/105 (32%), Positives = 57/105 (54%)
Query: 448 SVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYV 507
+ K H + ++R++ + F + K ++VAT GLD DV VI++ +P++ E Y+
Sbjct: 265 AAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYI 324
Query: 508 QEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFL 552
IGR GR GR ++ +R R L+ + ++E AINK L
Sbjct: 325 HRIGRTGRAGREGKAITLIN----YRERKLLKA--IEE-AINKRL 362
Score = 86 (35.3 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 40/143 (27%), Positives = 70/143 (48%)
Query: 192 LLRLV--YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--ILPGL---T 244
LL+ V G++ Q EAI ++L+ + + PTG GK+ Y +P + I G
Sbjct: 13 LLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQV 72
Query: 245 LVVCPL--VALMI-DQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
L+V P +AL + D++ L + L+ + + IR ++ G ++V+ +P R
Sbjct: 73 LIVTPTRELALQVADEVAKLGKYLKVRALAV-YGGQAIERQIRGLRQG-VEVIVGTPGRI 130
Query: 302 LNADFLSIFTATSLISLVVVDEA 324
L+ F A I +V++DEA
Sbjct: 131 LDHIGRKTFPAAE-IKIVILDEA 152
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 167 (63.8 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 41/116 (35%), Positives = 62/116 (53%)
Query: 403 QNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS 462
++E+ +++ + F S K I+ +S K D +S L ISV+S H DR
Sbjct: 469 EDEKRSHI-QAFIDSMSPKDKVIIFVSRKAV-ADHLSSDLGIRRISVESLHGNREQSDRE 526
Query: 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
R + F + K+R+++AT GLD DV V +Y P ++EEYV +GR GR GR
Sbjct: 527 RALKSFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGR 582
Score = 49 (22.3 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q +A ++L + V TG GK+L Y +P I
Sbjct: 268 QSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFI 301
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 148 (57.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 37/116 (31%), Positives = 59/116 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D++++ + + +V H + KDR I F S RV+V T G+D + V
Sbjct: 274 KVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSL 333
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSL--MYSDGVDE 545
VI+Y LP S + Y+ IGR+GR GR F+ DD +L+ + YS ++E
Sbjct: 334 VINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKKIESYYSTQIEE 389
Score = 60 (26.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 191 RLLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+LLR +Y Y + ++ IK +L+ T+ +G GK+ + I ++ L V C
Sbjct: 33 KLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQLINYDYVAC 92
Query: 249 PLVALMIDQLRHL 261
AL++ R L
Sbjct: 93 Q--ALILAPTREL 103
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 148 (57.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 37/116 (31%), Positives = 59/116 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D++++ + + +V H + KDR I F S RV+V T G+D + V
Sbjct: 274 KVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSL 333
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSL--MYSDGVDE 545
VI+Y LP S + Y+ IGR+GR GR F+ DD +L+ + YS ++E
Sbjct: 334 VINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKKIESYYSTQIEE 389
Score = 60 (26.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 191 RLLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+LLR +Y Y + ++ IK +L+ T+ +G GK+ + I ++ L V C
Sbjct: 33 KLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQLINYDYVAC 92
Query: 249 PLVALMIDQLRHL 261
AL++ R L
Sbjct: 93 Q--ALILAPTREL 103
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 166 (63.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 86/338 (25%), Positives = 142/338 (42%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----------------PGLTLVVCP 249
Q +A ++L + V TG GK+L Y +P I PG+ LV+ P
Sbjct: 268 QSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRARNGPGM-LVLTP 326
Query: 250 LVALMIDQLRHLPPVIHGGFLS-----SSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
L + + G S R ++ + ++ + ++ +P R LN
Sbjct: 327 TRELALQVEAECSKYSYKGLKSVCVYGGGDRDGQIKDLLK-----GVDIIIATPGR-LND 380
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXX 364
++ F IS +V+DEA + + F P M V M
Sbjct: 381 LQMNNFVYLKSISYLVLDEADKMLDMG--FEPQIMKILLDIRPDRQTV-----MTSATWP 433
Query: 365 XXLRDV-MSALEIPLSNLIQKAQLRDNLQLSVSLSGN---NRQNERSAYVDEVFSFHRSS 420
+R + S L+ P+ ++ L D + +S ++ N ++E+ +++ + F S
Sbjct: 434 YAVRRLAQSYLKEPM--IVYVGTL-DLVAVS-TVKQNIIVTTEDEKRSHI-QTFIESMSP 488
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480
K I+ +S K D +S L ISV+S H DR R + F + K+R+++AT
Sbjct: 489 KDKVIIFVSRKAV-ADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIATD 547
Query: 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
GLD DV V +Y P ++EEYV +GR GR GR
Sbjct: 548 LASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGR 585
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 148 (57.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 33/118 (27%), Positives = 55/118 (46%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ L + +V S H + R + F + R+++ T G+D + V
Sbjct: 270 KVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSL 329
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR GR GR F+ DD+ R Y+ ++E +N
Sbjct: 330 VINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMN 387
Score = 59 (25.8 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 186 DENLG-RLLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
D NL LLR +Y Y R ++ AI +L ++ + +G GK+ + I +
Sbjct: 23 DMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKID 82
Query: 243 LTLVVCPLVALMIDQLRHL 261
+L C AL++ R L
Sbjct: 83 TSLKQCQ--ALILAPTREL 99
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 148 (57.2 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 33/106 (31%), Positives = 56/106 (52%)
Query: 442 LCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPE 501
L ++ +V + +S +P ++R I + F S R++++T G+D + V VI+Y LP
Sbjct: 280 LRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA 339
Query: 502 SLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDE 545
+ E Y+ IGR GR GR F+ +D+ R YS ++E
Sbjct: 340 NKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEE 385
Score = 55 (24.4 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 26/79 (32%), Positives = 37/79 (46%)
Query: 186 DENLGRLLRLVYGYDSFRDG---QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
DENL LR V+GY F + Q AI +++ + +G GK+ + I A+
Sbjct: 30 DENL---LRGVFGY-GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID 85
Query: 243 LTLVVCPLVALMIDQLRHL 261
T V P ALM+ R L
Sbjct: 86 -TSVKAPQ-ALMLAPTREL 102
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 148 (57.2 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 33/106 (31%), Positives = 56/106 (52%)
Query: 442 LCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPE 501
L ++ +V + +S +P ++R I + F S R++++T G+D + V VI+Y LP
Sbjct: 280 LRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA 339
Query: 502 SLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDE 545
+ E Y+ IGR GR GR F+ +D+ R YS ++E
Sbjct: 340 NKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEE 385
Score = 55 (24.4 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 26/79 (32%), Positives = 37/79 (46%)
Query: 186 DENLGRLLRLVYGYDSFRDG---QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
DENL LR V+GY F + Q AI +++ + +G GK+ + I A+
Sbjct: 30 DENL---LRGVFGY-GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID 85
Query: 243 LTLVVCPLVALMIDQLRHL 261
T V P ALM+ R L
Sbjct: 86 -TSVKAPQ-ALMLAPTREL 102
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 158 (60.7 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 87/381 (22%), Positives = 156/381 (40%)
Query: 186 DENLGR-LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
D NL LLR +YGY + ++ AI + + + +G GK+ + I IL
Sbjct: 34 DMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIA--ILQQ 91
Query: 243 LTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIK 292
+ + AL++ R L I G ++ V E R+++ G
Sbjct: 92 IDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGC-H 150
Query: 293 VLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNV 352
V+ +P R + + T I L V+DEA S F+ +V
Sbjct: 151 VVVGTPGRVYDMINRKVLR-TQYIKLFVLDEAD--EMLSRGFKDQIQDVFKMLPP---DV 204
Query: 353 ECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLR-DNL-QLSVSLSGNNRQNERSAYV 410
+ IL + L + P+S L++K +L + + Q V++ N + +
Sbjct: 205 QVIL-LSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDL 263
Query: 411 DEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS 470
+ S +S ++ + + + D +++ + ++ +V + H + +DR I + F S
Sbjct: 264 YDTLSITQS-----VIFCNTRR-KVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRS 317
Query: 471 NKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530
RV++ T G+D + V VI+Y LP + E Y+ IGR GR GR F+ D
Sbjct: 318 GSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDD 377
Query: 531 YFRLRSL--MYSDGVDEYAIN 549
L+ + Y ++E N
Sbjct: 378 RRILKDIEQFYHTTIEEMPAN 398
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 145 (56.1 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 37/109 (33%), Positives = 53/109 (48%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I YL + + H G +DR LF + K V+VAT GLD D+
Sbjct: 360 DVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQH 419
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD----DITYFRLRSLM 538
VI+Y +P +E YV IGR GR G+ F++ +IT L+ L+
Sbjct: 420 VINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLL 468
Score = 62 (26.9 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
Q++ + +VL + + + TG+GK+L + +P +IL ++ P+ A
Sbjct: 124 QVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAA 170
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 152 (58.6 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 37/118 (31%), Positives = 56/118 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ L +V + H + R I + F S RV++AT G+D + V
Sbjct: 274 KVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSL 333
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR GR GR F+ DD+ R YS ++E +N
Sbjct: 334 VINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMN 391
Score = 49 (22.3 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 39/154 (25%), Positives = 64/154 (41%)
Query: 186 DE-NL-GRLLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP 241
DE NL LLR +Y Y R ++ AI V+ + +G GK+ + I +L
Sbjct: 26 DEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSIS--VLQ 83
Query: 242 GLTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAI 291
+ V AL++ R L I G F++ V + ++ +Q G
Sbjct: 84 KIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGP- 142
Query: 292 KVLFVSPERFLNADFLSI-FTATSLISLVVVDEA 324
+V+ +P R D + F T + + V+DEA
Sbjct: 143 QVVVGTPGRV--HDMIQRRFLKTDGMKMFVLDEA 174
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 157 (60.3 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 37/103 (35%), Positives = 51/103 (49%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+L + K + D I YL + V S H G DR E F N+ V+VAT
Sbjct: 444 VLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASK 503
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GLD + + VI++ +PE +E YV IGR GR GR F++
Sbjct: 504 GLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFIN 546
Score = 50 (22.7 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 8/34 (23%), Positives = 21/34 (61%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q++ I + L + + + TG+GK++ + +P ++
Sbjct: 217 QIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVM 250
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 157 (60.3 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 40/117 (34%), Positives = 62/117 (52%)
Query: 403 QNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS 462
+ +RS + + + S S K I+ +S K DL S L I V+S H DR
Sbjct: 444 EEKRSLFQEFLQSL--SPKDKVIVFVSRKLIADDLSSD-LSIQGIPVQSLHGDREQSDRE 500
Query: 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRL 519
R + F + K+++++AT GLD DV V +Y+ P ++EEYV +GR GR G++
Sbjct: 501 RALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKM 557
Score = 49 (22.3 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q +A +VL + + TG GK+L Y +P I
Sbjct: 242 QSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFI 275
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 157 (60.3 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 40/117 (34%), Positives = 62/117 (52%)
Query: 403 QNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS 462
+ +RS + + + S S K I+ +S K DL S L I V+S H DR
Sbjct: 453 EEKRSLFQEFLQSL--SPKDKVIVFVSRKLIADDLSSD-LSIQGIPVQSLHGDREQSDRE 509
Query: 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRL 519
R + F + K+++++AT GLD DV V +Y+ P ++EEYV +GR GR G++
Sbjct: 510 RALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKM 566
Score = 49 (22.3 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q +A +VL + + TG GK+L Y +P I
Sbjct: 251 QSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFI 284
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 151 (58.2 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 37/118 (31%), Positives = 56/118 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ L +V + H + R I + F S RV++AT G+D + V
Sbjct: 276 KVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSL 335
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR GR GR F+ DD+ R YS ++E +N
Sbjct: 336 VINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMN 393
Score = 48 (22.0 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 192 LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR VY Y R ++ AI ++ + +G GK+ + I A+ + C
Sbjct: 36 LLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQ 95
Query: 250 LVALMIDQLRHL 261
AL++ R L
Sbjct: 96 --ALIVAPTREL 105
>TAIR|locus:2075034 [details] [associations]
symbol:AT3G09720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AC016661
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000242486 KO:K14779 OMA:NVMKQSG EMBL:BT005833
EMBL:AK227326 IPI:IPI00542757 RefSeq:NP_187583.2 UniGene:At.40050
ProteinModelPortal:Q84TG1 SMR:Q84TG1 STRING:Q84TG1 PaxDb:Q84TG1
PRIDE:Q84TG1 EnsemblPlants:AT3G09720.1 GeneID:820129
KEGG:ath:AT3G09720 KEGG:dosa:Os07t0647900-01 GeneFarm:1036
TAIR:At3g09720 InParanoid:Q84TG1 PhylomeDB:Q84TG1
ProtClustDB:CLSN2690529 Genevestigator:Q84TG1 GermOnline:AT3G09720
Uniprot:Q84TG1
Length = 541
Score = 146 (56.5 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 37/133 (27%), Positives = 61/133 (45%)
Query: 415 SFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
SF S ++ + K +L C+N I HS +P +R + F + +
Sbjct: 374 SFAESLNPPVLIFVQSKERAKELYDELKCEN-IRAGVIHSDLPPGERENAVDQFRAGEKW 432
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYF 532
V++AT G+D + + VI+Y P+S Y+ IGR+GR GR F D+ +
Sbjct: 433 VLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFL 492
Query: 533 R-LRSLMYSDGVD 544
R + + M S G +
Sbjct: 493 RNIANTMMSSGCE 505
Score = 56 (24.8 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q +AI ++L + PTG+GK+ + P +I
Sbjct: 168 QRQAIPILLSGRECFACAPTGSGKTFAFICPMLI 201
Score = 43 (20.2 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 93 NPQG-IN-EIKSDAFAKKKKQINLVSVDVPLPPAK 125
NP+ +N +++ DA ++K+ I++ ++P PP K
Sbjct: 104 NPKKELNRQMERDALSRKQYSIHVSGNNIP-PPLK 137
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 150 (57.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 33/103 (32%), Positives = 51/103 (49%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+L + K + D I YL + + H G ++R++ E F K V+VAT
Sbjct: 286 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVATDVASK 345
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GLD + V++Y +PE +E YV IGR GR G+ F++
Sbjct: 346 GLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFIN 388
Score = 51 (23.0 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q++ I +L + + + TG+GK+L + +P ++
Sbjct: 64 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIM 97
>UNIPROTKB|I3LRT7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00620000087942 EMBL:CU929824
Ensembl:ENSSSCT00000031627 OMA:VGDERTM Uniprot:I3LRT7
Length = 290
Score = 150 (57.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 34/95 (35%), Positives = 48/95 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 119 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQH 178
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
VI++ LP +++EYV IGR GR G F D+
Sbjct: 179 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDE 213
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 153 (58.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 76/361 (21%), Positives = 149/361 (41%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--ILPG----LTLVVCPL 250
YGY++ Q AI + + + + +G GK+ + I A+ I L++ P
Sbjct: 41 YGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPT 100
Query: 251 VALMIDQLRHLPPVIHGGFLS----SSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
L + Q++++ I G +L +S +++ I + G ++++ +P R L+
Sbjct: 101 RELAL-QIKNVITAI-GLYLKVTVHASIGGTSMSDDIEAFRSG-VQIVVGTPGRVLDMIE 157
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXX 366
F T + + ++DEA S F+ I+ +
Sbjct: 158 RRYFK-TDKVKMFILDEAD--EMLSSGFKEQIYNIFRLLPETTQ----IVLLSATMPQDV 210
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
L + P+ L++K +L L+ + N + E + D + + S +
Sbjct: 211 LEVTTKFMNNPVRILVKKDEL--TLE-GIKQFYINVELEDYKF-DCLCDLYDSISVTQAV 266
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+ + ++ L + +V + H+ +P +R I + F S R++++T G+
Sbjct: 267 IFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGI 326
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVD 544
D + V VI+Y LP + E Y+ IGR GR GR F+ D +R + YS ++
Sbjct: 327 DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIE 386
Query: 545 E 545
E
Sbjct: 387 E 387
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 153 (58.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 76/361 (21%), Positives = 149/361 (41%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--ILPG----LTLVVCPL 250
YGY++ Q AI + + + + +G GK+ + I A+ I L++ P
Sbjct: 41 YGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPT 100
Query: 251 VALMIDQLRHLPPVIHGGFLS----SSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
L + Q++++ I G +L +S +++ I + G ++++ +P R L+
Sbjct: 101 RELAL-QIKNVITAI-GLYLKVTVHASIGGTSMSDDIEAFRSG-VQIVVGTPGRVLDMIE 157
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXX 366
F T + + ++DEA S F+ I+ +
Sbjct: 158 RRYFK-TDKVKMFILDEAD--EMLSSGFKEQIYNIFRLLPETTQ----IVLLSATMPQDV 210
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
L + P+ L++K +L L+ + N + E + D + + S +
Sbjct: 211 LEVTTKFMNNPVRILVKKDEL--TLE-GIKQFYINVELEDYKF-DCLCDLYDSISVTQAV 266
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+ + ++ L + +V + H+ +P +R I + F S R++++T G+
Sbjct: 267 IFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGI 326
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVD 544
D + V VI+Y LP + E Y+ IGR GR GR F+ D +R + YS ++
Sbjct: 327 DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIE 386
Query: 545 E 545
E
Sbjct: 387 E 387
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 152 (58.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 81/382 (21%), Positives = 155/382 (40%)
Query: 186 DENLGR-LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
D NL LLR +Y Y + ++ AI + + +G GK+ + I IL
Sbjct: 36 DMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS--ILQQ 93
Query: 243 LTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIK 292
+ L + AL++ R L I G ++ +S V ++ +Q+ A
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPH 153
Query: 293 VLFVSPERFLNADFLSI-FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXN 351
++ +P R D L+ + + I + V+DEA S F+ N
Sbjct: 154 IIVGTPGRVF--DMLNRRYLSPKYIKMFVLDEAD--EMLSRGFKDQIYDIFQKLNS---N 206
Query: 352 VECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLR-DNL-QLSVSLSGNNRQNERSAY 409
+ +L + L + P+ L++K +L + + Q +++ + +
Sbjct: 207 TQVVL-LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 265
Query: 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFC 469
+ E + ++ ++ I+ + + D ++ + +V + H + K+R I F
Sbjct: 266 LYETLTITQA-----VIFINTRR-KVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 319
Query: 470 SNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529
S RV++ T G+D + V VI+Y LP + E Y+ IGR GR GR + +
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 530 TYFRLRSL--MYSDGVDEYAIN 549
LR + Y+ ++E +N
Sbjct: 380 DKRTLRDIETFYNTSIEEMPLN 401
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 152 (58.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 81/382 (21%), Positives = 155/382 (40%)
Query: 186 DENLGR-LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
D NL LLR +Y Y + ++ AI + + +G GK+ + I IL
Sbjct: 36 DMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS--ILQQ 93
Query: 243 LTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIK 292
+ L + AL++ R L I G ++ +S V ++ +Q+ A
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPH 153
Query: 293 VLFVSPERFLNADFLSI-FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXN 351
++ +P R D L+ + + I + V+DEA S F+ N
Sbjct: 154 IIVGTPGRVF--DMLNRRYLSPKYIKMFVLDEAD--EMLSRGFKDQIYDIFQKLNS---N 206
Query: 352 VECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLR-DNL-QLSVSLSGNNRQNERSAY 409
+ +L + L + P+ L++K +L + + Q +++ + +
Sbjct: 207 TQVVL-LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 265
Query: 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFC 469
+ E + ++ ++ I+ + + D ++ + +V + H + K+R I F
Sbjct: 266 LYETLTITQA-----VIFINTRR-KVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 319
Query: 470 SNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529
S RV++ T G+D + V VI+Y LP + E Y+ IGR GR GR + +
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 530 TYFRLRSL--MYSDGVDEYAIN 549
LR + Y+ ++E +N
Sbjct: 380 DKRTLRDIETFYNTSIEEMPLN 401
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 152 (58.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 81/382 (21%), Positives = 155/382 (40%)
Query: 186 DENLGR-LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
D NL LLR +Y Y + ++ AI + + +G GK+ + I IL
Sbjct: 36 DMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS--ILQQ 93
Query: 243 LTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIK 292
+ L + AL++ R L I G ++ +S V ++ +Q+ A
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPH 153
Query: 293 VLFVSPERFLNADFLSI-FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXN 351
++ +P R D L+ + + I + V+DEA S F+ N
Sbjct: 154 IIVGTPGRVF--DMLNRRYLSPKYIKMFVLDEAD--EMLSRGFKDQIYDIFQKLNS---N 206
Query: 352 VECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLR-DNL-QLSVSLSGNNRQNERSAY 409
+ +L + L + P+ L++K +L + + Q +++ + +
Sbjct: 207 TQVVL-LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 265
Query: 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFC 469
+ E + ++ ++ I+ + + D ++ + +V + H + K+R I F
Sbjct: 266 LYETLTITQA-----VIFINTRR-KVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 319
Query: 470 SNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529
S RV++ T G+D + V VI+Y LP + E Y+ IGR GR GR + +
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 530 TYFRLRSL--MYSDGVDEYAIN 549
LR + Y+ ++E +N
Sbjct: 380 DKRTLRDIETFYNTSIEEMPLN 401
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 152 (58.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 81/382 (21%), Positives = 155/382 (40%)
Query: 186 DENLGR-LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
D NL LLR +Y Y + ++ AI + + +G GK+ + I IL
Sbjct: 36 DMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS--ILQQ 93
Query: 243 LTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIK 292
+ L + AL++ R L I G ++ +S V ++ +Q+ A
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPH 153
Query: 293 VLFVSPERFLNADFLSI-FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXN 351
++ +P R D L+ + + I + V+DEA S F+ N
Sbjct: 154 IIVGTPGRVF--DMLNRRYLSPKYIKMFVLDEAD--EMLSRGFKDQIYDIFQKLNS---N 206
Query: 352 VECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLR-DNL-QLSVSLSGNNRQNERSAY 409
+ +L + L + P+ L++K +L + + Q +++ + +
Sbjct: 207 TQVVL-LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 265
Query: 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFC 469
+ E + ++ ++ I+ + + D ++ + +V + H + K+R I F
Sbjct: 266 LYETLTITQA-----VIFINTRR-KVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 319
Query: 470 SNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529
S RV++ T G+D + V VI+Y LP + E Y+ IGR GR GR + +
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 530 TYFRLRSL--MYSDGVDEYAIN 549
LR + Y+ ++E +N
Sbjct: 380 DKRTLRDIETFYNTSIEEMPLN 401
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 152 (58.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 81/382 (21%), Positives = 155/382 (40%)
Query: 186 DENLGR-LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
D NL LLR +Y Y + ++ AI + + +G GK+ + I IL
Sbjct: 36 DMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS--ILQQ 93
Query: 243 LTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIK 292
+ L + AL++ R L I G ++ +S V ++ +Q+ A
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPH 153
Query: 293 VLFVSPERFLNADFLSI-FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXN 351
++ +P R D L+ + + I + V+DEA S F+ N
Sbjct: 154 IIVGTPGRVF--DMLNRRYLSPKYIKMFVLDEAD--EMLSRGFKDQIYDIFQKLNS---N 206
Query: 352 VECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLR-DNL-QLSVSLSGNNRQNERSAY 409
+ +L + L + P+ L++K +L + + Q +++ + +
Sbjct: 207 TQVVL-LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 265
Query: 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFC 469
+ E + ++ ++ I+ + + D ++ + +V + H + K+R I F
Sbjct: 266 LYETLTITQA-----VIFINTRR-KVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 319
Query: 470 SNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529
S RV++ T G+D + V VI+Y LP + E Y+ IGR GR GR + +
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 530 TYFRLRSL--MYSDGVDEYAIN 549
LR + Y+ ++E +N
Sbjct: 380 DKRTLRDIETFYNTSIEEMPLN 401
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 152 (58.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 81/382 (21%), Positives = 155/382 (40%)
Query: 186 DENLGR-LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
D NL LLR +Y Y + ++ AI + + +G GK+ + I IL
Sbjct: 36 DMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS--ILQQ 93
Query: 243 LTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIK 292
+ L + AL++ R L I G ++ +S V ++ +Q+ A
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPH 153
Query: 293 VLFVSPERFLNADFLSI-FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXN 351
++ +P R D L+ + + I + V+DEA S F+ N
Sbjct: 154 IIVGTPGRVF--DMLNRRYLSPKYIKMFVLDEAD--EMLSRGFKDQIYDIFQKLNS---N 206
Query: 352 VECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLR-DNL-QLSVSLSGNNRQNERSAY 409
+ +L + L + P+ L++K +L + + Q +++ + +
Sbjct: 207 TQVVL-LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 265
Query: 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFC 469
+ E + ++ ++ I+ + + D ++ + +V + H + K+R I F
Sbjct: 266 LYETLTITQA-----VIFINTRR-KVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 319
Query: 470 SNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529
S RV++ T G+D + V VI+Y LP + E Y+ IGR GR GR + +
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 530 TYFRLRSL--MYSDGVDEYAIN 549
LR + Y+ ++E +N
Sbjct: 380 DKRTLRDIETFYNTSIEEMPLN 401
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 152 (58.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 81/382 (21%), Positives = 155/382 (40%)
Query: 186 DENLGR-LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
D NL LLR +Y Y + ++ AI + + +G GK+ + I IL
Sbjct: 36 DMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS--ILQQ 93
Query: 243 LTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIK 292
+ L + AL++ R L I G ++ +S V ++ +Q+ A
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPH 153
Query: 293 VLFVSPERFLNADFLSI-FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXN 351
++ +P R D L+ + + I + V+DEA S F+ N
Sbjct: 154 IIVGTPGRVF--DMLNRRYLSPKYIKMFVLDEAD--EMLSRGFKDQIYDIFQKLNS---N 206
Query: 352 VECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLR-DNL-QLSVSLSGNNRQNERSAY 409
+ +L + L + P+ L++K +L + + Q +++ + +
Sbjct: 207 TQVVL-LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 265
Query: 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFC 469
+ E + ++ ++ I+ + + D ++ + +V + H + K+R I F
Sbjct: 266 LYETLTITQA-----VIFINTRR-KVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 319
Query: 470 SNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529
S RV++ T G+D + V VI+Y LP + E Y+ IGR GR GR + +
Sbjct: 320 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE 379
Query: 530 TYFRLRSL--MYSDGVDEYAIN 549
LR + Y+ ++E +N
Sbjct: 380 DKRTLRDIETFYNTSIEEMPLN 401
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 154 (59.3 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 79/338 (23%), Positives = 142/338 (42%)
Query: 213 VLDKKSTMLVLPTGAGKSLCYQIPAMI--------LPG-------LTLVVCPL--VALMI 255
+LD + + + TG+GK+L + IPA++ + G LV+ P +A+ I
Sbjct: 148 LLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207
Query: 256 -DQLRH------LPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
D LR L + ++GG SS+ P+ I I+ G + ++ +P R +
Sbjct: 208 SDVLREAGEPCGLKSICVYGG---SSKGPQ-----ISAIRSG-VDIVIGTPGRLRDLIES 258
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXL 367
++ + +S VV+DEA + + ++ +
Sbjct: 259 NVLRLSD-VSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEF 317
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D + +++ + + + A D +Q+ L R A +++ +H+S K+ +L
Sbjct: 318 MDP-NPIKVIIGS-VDLAANHDVMQIIEVLDERARDQRLIALLEK---YHKSQKNR-VLV 371
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ E + + R+L S H +R+R LF ++VAT GLD
Sbjct: 372 FALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLD 431
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
DV VI+Y+ P + E+YV IGR GR G+ H F
Sbjct: 432 IPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTF 469
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 147 (56.8 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 41/158 (25%), Positives = 70/158 (44%)
Query: 374 LEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNER-SAYVDEVFSFHRSSKHYYILQISGKH 432
+ P+ I +QL N +S ++ A +D + + + + L +
Sbjct: 339 IRTPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIFTMTK 398
Query: 433 FETDLISRYLCDN--SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
D + Y+ N ++ + + H + R RI + F + ++ +VVAT GLD +
Sbjct: 399 KGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKG 458
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
+ VI++SLP E YV IGR GR G L H L +
Sbjct: 459 ISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSN 496
Score = 52 (23.4 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 23/72 (31%), Positives = 31/72 (43%)
Query: 51 SISAFKSLETLPAGFCFR----LASFTKIQKPSLRFENDQSLPTPS--NPQGINEIKS-- 102
SIS F+S E L A F R SF + + N+ + S N G N +
Sbjct: 19 SISTFRSTEPLFASFQRRSEGSTQSFGETNNYQNNYNNNNNNNNNSFMNNDGYNSKSNNG 78
Query: 103 -DAFAKKKKQIN 113
D F KK++IN
Sbjct: 79 FDNFGNKKREIN 90
Score = 45 (20.9 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 130 NGEGNFVRLNLNNNKRKFANKGKRNKSFRG 159
N + N+ N NNN N G +KS G
Sbjct: 49 NYQNNYNNNNNNNNNSFMNNDGYNSKSNNG 78
Score = 44 (20.5 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 218 STML-VLPTGAGKSLCYQIPAM 238
S ML + TG+GK+L + +PA+
Sbjct: 177 SDMLGISKTGSGKTLSFILPAI 198
Score = 42 (19.8 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 131 GEGNFVRLNLNNNKRKFANKGKRNKSFRGK 160
GE N + N NNN N N + K
Sbjct: 45 GETNNYQNNYNNNNNNNNNSFMNNDGYNSK 74
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 121 (47.7 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 29/91 (31%), Positives = 42/91 (46%)
Query: 447 ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY 506
I+V H+ + R + F S KI V++ T G+D + + VI+Y P S EY
Sbjct: 439 INVDVIHADRTQQQRDNVVSSFRSGKIWVLICTALLARGIDFKGINLVINYDFPTSAVEY 498
Query: 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
+ IGR GR G F + LRS+
Sbjct: 499 IHRIGRTGRAGHKGKAVTFFTEDDKPLLRSI 529
Score = 82 (33.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 32/118 (27%), Positives = 53/118 (44%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP-LVALMIDQLRHLPPV 264
Q++A+ +++ K+ + PTG+GK++ + +P +L L + AL+I R L
Sbjct: 194 QMQAVPLMMHKREILACAPTGSGKTMAFCLP--LLAHLRQPLNKGFRALIISPTRELATQ 251
Query: 265 IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVD 322
H L S E V + +I G V P+ D L + T LI L+ D
Sbjct: 252 THRELLKLS---EGVGFRVHMINKGVEAVKKYGPKSAKKFDIL-VTTPNRLIYLLNQD 305
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 149 (57.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 34/94 (36%), Positives = 48/94 (51%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 537 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQH 596
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI+++LP +++EYV IGR GR G F D
Sbjct: 597 VINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFD 630
Score = 54 (24.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MILPGLT 244
GY Q +I +VL + M TG+GK+ + +P M+ G+T
Sbjct: 292 GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGIT 341
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 149 (57.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 34/94 (36%), Positives = 48/94 (51%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 537 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQH 596
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI+++LP +++EYV IGR GR G F D
Sbjct: 597 VINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFD 630
Score = 54 (24.1 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MILPGLT 244
GY Q +I +VL + M TG+GK+ + +P M+ G+T
Sbjct: 292 GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGIT 341
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 149 (57.5 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+L + K + D I YL + + H G ++R++ E F K V+VAT
Sbjct: 431 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASK 490
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GLD + VI+Y +PE +E YV IGR GR G F++
Sbjct: 491 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 533
Score = 52 (23.4 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q++ I +L + + + TG+GK+L + +P ++
Sbjct: 204 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 237
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 149 (57.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+L + K + D I YL + + H G ++R++ E F K V+VAT
Sbjct: 434 VLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 493
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GLD + VI+Y +PE +E YV IGR GR G F++
Sbjct: 494 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 536
Score = 52 (23.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q++ I +L + + + TG+GK+L + +P ++
Sbjct: 207 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 240
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 148 (57.2 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 34/94 (36%), Positives = 47/94 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 526 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQH 585
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI++ LP +++EYV IGR GR G F D
Sbjct: 586 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 619
Score = 54 (24.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MILPGLT 244
GY Q +I +VL + M TG+GK+ + +P M+ G+T
Sbjct: 281 GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGIT 330
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 149 (57.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+L + K + D I YL + + H G ++R++ E F K V+VAT
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GLD + VI+Y +PE +E YV IGR GR G F++
Sbjct: 495 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Score = 52 (23.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q++ I +L + + + TG+GK+L + +P ++
Sbjct: 208 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 149 (57.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+L + K + D I YL + + H G ++R++ E F K V+VAT
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GLD + VI+Y +PE +E YV IGR GR G F++
Sbjct: 495 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Score = 52 (23.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q++ I +L + + + TG+GK+L + +P ++
Sbjct: 208 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 149 (57.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+L + K + D I YL + + H G ++R++ E F K V+VAT
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GLD + VI+Y +PE +E YV IGR GR G F++
Sbjct: 495 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Score = 52 (23.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q++ I +L + + + TG+GK+L + +P ++
Sbjct: 208 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 149 (57.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+L + K + D I YL + + H G ++R++ E F K V+VAT
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GLD + VI+Y +PE +E YV IGR GR G F++
Sbjct: 495 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Score = 52 (23.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q++ I +L + + + TG+GK+L + +P ++
Sbjct: 208 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 149 (57.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+L + K + D I YL + + H G ++R++ E F K V+VAT
Sbjct: 435 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 494
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GLD + VI+Y +PE +E YV IGR GR G F++
Sbjct: 495 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 537
Score = 52 (23.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q++ I +L + + + TG+GK+L + +P ++
Sbjct: 208 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 241
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 144 (55.7 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 35/93 (37%), Positives = 50/93 (53%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
++ I KH L+S+ L I +S HSG R +I F S KI+ +VAT
Sbjct: 252 LIFIETKHGAAKLVSQ-LEKRGIVAESIHSGRAQDIREKILNDFKSGKIKFLVATAIAAR 310
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
GLD ++ VI+Y LP +++Y+ IGR GR G
Sbjct: 311 GLDIGELSRVINYDLPAQVDDYIHRIGRTGRAG 343
Score = 51 (23.0 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
GY Q +AI +VL K + TG GK+ + +P +
Sbjct: 20 GYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLL 60
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 147 (56.8 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 37/116 (31%), Positives = 55/116 (47%)
Query: 403 QNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS 462
+ E+ A E F + S I+ +S KH DL S + IS +S H D+
Sbjct: 450 EKEKRALTQE-FVENMSPNDKVIMFVSQKHIADDLSSDFNIQG-ISAESLHGNSEQSDQE 507
Query: 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
R E F S I++++ T GLD DV V +Y P +++ YV +G GR G+
Sbjct: 508 RAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGK 563
Score = 54 (24.1 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q +A ++L ++V TG GK+L Y +P I
Sbjct: 249 QSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFI 282
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 149 (57.5 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+L + K + D I YL + + H G ++R++ E F K V+VAT
Sbjct: 453 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 512
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GLD + VI+Y +PE +E YV IGR GR G F++
Sbjct: 513 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 555
Score = 52 (23.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q++ I +L + + + TG+GK+L + +P ++
Sbjct: 226 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 259
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 148 (57.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 34/94 (36%), Positives = 47/94 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 525 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQH 584
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI++ LP +++EYV IGR GR G F D
Sbjct: 585 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 618
Score = 54 (24.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MILPGLT 244
GY Q +I +VL + M TG+GK+ + +P M+ G+T
Sbjct: 280 GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGIT 329
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 149 (57.5 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+L + K + D I YL + + H G ++R++ E F K V+VAT
Sbjct: 462 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 521
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GLD + VI+Y +PE +E YV IGR GR G F++
Sbjct: 522 GLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFIN 564
Score = 52 (23.4 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q++ I +L + + + TG+GK+L + +P ++
Sbjct: 235 QIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 268
>ZFIN|ZDB-GENE-040120-6 [details] [associations]
symbol:eif4a1b "eukaryotic translation initiation
factor 4A, isoform 1B" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040120-6 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 OrthoDB:EOG4640C1 EMBL:BC153507
IPI:IPI00509685 UniGene:Dr.104803 ProteinModelPortal:A8E590
SMR:A8E590 STRING:A8E590 ArrayExpress:A8E590 Uniprot:A8E590
Length = 429
Score = 150 (57.9 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 84/384 (21%), Positives = 155/384 (40%)
Query: 186 DENLGR-LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
D NL LLR +Y Y + ++ AI + + +G GK+ + I IL
Sbjct: 59 DMNLRETLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS--ILQQ 116
Query: 243 LTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIK 292
+ + + AL++ R L I G ++ ++ V ++ +Q A
Sbjct: 117 IDIELKGTQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEVQKLQAEAPH 176
Query: 293 VLFVSPER---FLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXX 349
++ +P R LN FLS + I + V+DEA S F+
Sbjct: 177 IVVGTPGRVYDMLNRKFLS----SKYIKMFVLDEAD--EMLSRGFKDQIYEIFQKLST-- 228
Query: 350 XNVECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLR-DNL-QLSVSLSGNNRQNERS 407
+++ +L + L + P+ L++K +L + + Q +++ + +
Sbjct: 229 -SIQVVL-LSATMPAEVLDVTTKFMREPVRILVKKEELTLEGIRQFYINVEKEEWKLDTL 286
Query: 408 AYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ E + ++ ++ I+ + + D ++ + +V + H + KDR I
Sbjct: 287 CDLYETLTITQA-----VIFINTRR-KVDWLTEKMHARDFTVSALHGDMDQKDRDLIMRE 340
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F S RV++ T G+D + V VI+Y LP + E Y+ IGR GR GR +
Sbjct: 341 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT 400
Query: 527 -DDITYFRLRSLMYSDGVDEYAIN 549
DD R Y+ V+E +N
Sbjct: 401 EDDKRTLRDIETFYNTTVEEMPMN 424
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 154 (59.3 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 40/117 (34%), Positives = 61/117 (52%)
Query: 403 QNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS 462
+ E+ + V E F S K I+ +S K DL S L I V+S H DR
Sbjct: 429 EEEKRSLVKE-FLQSLSPKDKVIVFVSRKLVADDLSSD-LSIQGIPVQSLHGDREQSDRD 486
Query: 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRL 519
+ E F + ++++++AT GLD DV V +Y+ P ++EEYV +GR GR G++
Sbjct: 487 QALEDFRTGRVKILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKI 543
Score = 45 (20.9 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q ++ ++L + + TG GK+L Y +P I
Sbjct: 228 QSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFI 261
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 124 (48.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 447 ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY 506
I+V H+ + R + F + KI V++ T G+D + V VI+Y LP S EY
Sbjct: 431 INVDVIHADKTQQQRDNVVHSFRAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEY 490
Query: 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
+ IGR GR G F + LRS+
Sbjct: 491 IHRIGRTGRAGHTGKAVTFFTEDDKPLLRSI 521
Score = 76 (31.8 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 37/131 (28%), Positives = 59/131 (45%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LP---GL-TLVVCPLVALMIDQL 258
Q++AI ++L + + PTG+GK+L + IP + P G L++ P L
Sbjct: 186 QMQAIPVMLHGRELLASAPTGSGKTLAFCIPLLTHLKQPMNKGFRALIISPTRELASQTH 245
Query: 259 RHLPPVIHG-GF-LSSSQRPEEVAETIRLIQVGAIKVLFVSPERF---LNADFLSIFTAT 313
R L + G GF + Q+ E A+ +L +P R L D +I T
Sbjct: 246 RELVKLADGTGFRIHMIQKASEAAKKFGPKSSRKFDILVTTPNRLIYLLKQDPPAI-DLT 304
Query: 314 SLISLVVVDEA 324
S + +VVDE+
Sbjct: 305 S-VEWLVVDES 314
>UNIPROTKB|J3KRM6 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000582464
Uniprot:J3KRM6
Length = 118
Score = 127 (49.8 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
FGMG+DK +V V H+++ +S+ Y QE GRAGRDG+ S+C L+
Sbjct: 2 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 45
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 154 (59.3 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 49/160 (30%), Positives = 73/160 (45%)
Query: 381 LIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI------SGKHF- 433
L+ + L+D + LSV G+ +N +V S K Y+L I G
Sbjct: 380 LLARDFLKDYVFLSVGRVGSTSEN----ITQKVVHVEDSEKRSYLLDILHTLPPEGLTLI 435
Query: 434 --ET----DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
ET D ++ YL +++ S H ++R R ELF S + ++VAT GLD
Sbjct: 436 FVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLD 495
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
+V VI+Y LP +++YV IGR GR G F +
Sbjct: 496 IPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFN 535
Score = 45 (20.9 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL 240
GY Q +I +V + M TG+GK+ + P + L
Sbjct: 188 GYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 148 (57.2 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 34/94 (36%), Positives = 47/94 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 553 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQH 612
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI++ LP +++EYV IGR GR G F D
Sbjct: 613 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 646
Score = 52 (23.4 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
GY Q +I ++L + M TG+GK+ + +P +
Sbjct: 308 GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 348
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 148 (57.2 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 34/94 (36%), Positives = 47/94 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 553 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQH 612
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI++ LP +++EYV IGR GR G F D
Sbjct: 613 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 646
Score = 52 (23.4 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
GY Q +I ++L + M TG+GK+ + +P +
Sbjct: 308 GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 348
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 148 (57.2 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ +LC ++ S H ++R F S K +++VAT GLD +V
Sbjct: 431 KADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQH 490
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
VI++ LP ++E+YV IGR GR G F DD
Sbjct: 491 VINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDD 525
Score = 48 (22.0 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MILPGLT 244
GY Q +I ++ + M TG+GK+ + +P M+ G+T
Sbjct: 186 GYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVT 235
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 148 (57.2 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 34/94 (36%), Positives = 47/94 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 532 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQH 591
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI++ LP +++EYV IGR GR G F D
Sbjct: 592 VINFDLPSTIDEYVHRIGRTGRCGNTGKAISFFD 625
Score = 51 (23.0 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
GY Q I ++L + M TG+GK+ + +P +
Sbjct: 285 GYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLLPIL 325
>TIGR_CMR|DET_0967 [details] [associations]
symbol:DET_0967 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000027
GenomeReviews:CP000027_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1205 InterPro:IPR018973
Pfam:PF09369 KO:K06877 HOGENOM:HOG000250411 OMA:ALWEPPL
InterPro:IPR022307 TIGRFAMs:TIGR03817 RefSeq:YP_181690.1
ProteinModelPortal:Q3Z7V9 STRING:Q3Z7V9 GeneID:3229689
KEGG:det:DET0967 PATRIC:21608983 ProtClustDB:CLSK935591
BioCyc:DETH243164:GJNF-968-MONOMER Uniprot:Q3Z7V9
Length = 764
Score = 120 (47.3 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 44/129 (34%), Positives = 65/129 (50%)
Query: 435 TDLISRYLCDNSISVKS--------YHSGIPAKDRSRIQ-ELFCSNKIRVVVATVAFGMG 485
T+LI +Y D I++K Y G A+DR +I+ ELF S ++ V+T A +G
Sbjct: 303 TELIYKYSRDRLIAIKPEFADLIKPYRGGYTAEDRRKIEKELF-SGRLLGAVSTNALELG 361
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRD-GR-LSYCHLFLD---DITYFRLRSLMYS 540
+D D+GA I P S+ Q+ GR+GR G LS+ L LD D Y +++
Sbjct: 362 IDIGDLGATILTGFPGSISSTFQQAGRSGRRCGHSLSFL-LGLDNPLDQYYMNNPEKLFN 420
Query: 541 DGVDEYAIN 549
G + IN
Sbjct: 421 SGFEGTFIN 429
Score = 81 (33.6 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--IL--PGL-TLVVCPLVALMIDQLRH 260
Q A+ + K+ ++ P +GKSLCY +P + +L P L + P AL DQLR
Sbjct: 60 QANAVNLSRQGKNIIVATPAASGKSLCYNLPVLEKLLSDPNARALYLYPAKALAQDQLRS 119
Query: 261 L 261
L
Sbjct: 120 L 120
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 147 (56.8 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 34/94 (36%), Positives = 47/94 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 532 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQH 591
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI++ LP +++EYV IGR GR G F D
Sbjct: 592 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 625
Score = 52 (23.4 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
GY Q +I ++L + M TG+GK+ + +P +
Sbjct: 287 GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 327
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 149 (57.5 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 48/159 (30%), Positives = 77/159 (48%)
Query: 381 LIQKAQLRDN-LQLSVSLSGNNRQN--ERSAYVDEV--------FSFHRSSKHYYILQIS 429
++ K L+DN + L+V G+ +N +R +V+E+ + S++ ++ +
Sbjct: 347 VLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVE 406
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K +L + +L I S H + +R R ELF S + ++VAT GLD
Sbjct: 407 TKRGANEL-AYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIP 465
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
+V VI+Y LP +EYV IGR GR G L F +D
Sbjct: 466 NVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFND 504
Score = 49 (22.3 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--ILPG 242
GY Q +I +L + M TG+GK+ + +P + IL G
Sbjct: 158 GYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAG 204
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 147 (56.8 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 84/380 (22%), Positives = 148/380 (38%)
Query: 186 DENLGR-LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
D NL LLR +Y Y + ++ AI + + +G GK+ + I IL
Sbjct: 41 DMNLKETLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAIS--ILQQ 98
Query: 243 LTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIK 292
L + AL++ R L I G ++ +S V ++ +Q A
Sbjct: 99 LEIEQKETQALVLAPTRELAQQIQKVILALGDYMGASCHACIGGTNVRNEMQKLQAEAPH 158
Query: 293 VLFVSPERFLNADFLSI-FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXN 351
++ +P R D L+ + + I + V+DEA S F+ N
Sbjct: 159 IVVGTPGRVF--DMLNRRYLSPKWIKMFVLDEAD--EMLSRGFKDQIYEIFQKLST---N 211
Query: 352 VECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVD 411
++ +L + L + P+ L++K +L L+ N + E +D
Sbjct: 212 IQVVL-LSATMPADVLEVTTKFMREPVRILVKKEEL--TLEGIKQFYINVEREEWK--LD 266
Query: 412 EVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
+ + + + + D ++ + +V + H + K+R I F S
Sbjct: 267 TLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDIIMREFRSG 326
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531
RV++ T G+D + V VI+Y LP + E Y+ IGR GR GR F+ +
Sbjct: 327 SSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDK 386
Query: 532 FRLRSL--MYSDGVDEYAIN 549
LR + Y+ V+E +N
Sbjct: 387 RILRDIETFYNTTVEEMPMN 406
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 147 (56.8 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 34/94 (36%), Positives = 47/94 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 550 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQH 609
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI++ LP +++EYV IGR GR G F D
Sbjct: 610 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 643
Score = 52 (23.4 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
GY Q +I ++L + M TG+GK+ + +P +
Sbjct: 305 GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 345
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 147 (56.8 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 34/94 (36%), Positives = 47/94 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 552 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQH 611
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI++ LP +++EYV IGR GR G F D
Sbjct: 612 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 645
Score = 52 (23.4 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
GY Q +I ++L + M TG+GK+ + +P +
Sbjct: 307 GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 347
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 148 (57.2 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ +LC ++ S H ++R F S K +++VAT GLD +V
Sbjct: 431 KADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQH 490
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
VI++ LP ++E+YV IGR GR G F DD
Sbjct: 491 VINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDD 525
Score = 48 (22.0 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MILPGLT 244
GY Q +I ++ + M TG+GK+ + +P M+ G+T
Sbjct: 186 GYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVT 235
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 113 (44.8 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 29/91 (31%), Positives = 41/91 (45%)
Query: 447 ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY 506
I+V H+ + R F + KI V++ T G+D + V VI+Y P S EY
Sbjct: 345 INVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEY 404
Query: 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
+ IGR GR G F + LRS+
Sbjct: 405 IHRIGRTGRAGHKGKAVTFFTEDDKPLLRSV 435
Score = 83 (34.3 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 35/118 (29%), Positives = 51/118 (43%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP-LVALMIDQLRHLPPV 264
Q++AI ++L + + PTG+GK+L + IP IL L AL+I R L
Sbjct: 100 QMQAIPVMLHGRELLASAPTGSGKTLAFSIP--ILMQLKQPTNKGFRALVISPTRELASQ 157
Query: 265 IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVD 322
IH + S E I +I A+ P+ D L + T LI L+ D
Sbjct: 158 IHRELVKIS---EGTGFRIHMIHKAAVAAKKFGPKSSKKFDIL-VTTPNRLIYLLKQD 211
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 137 (53.3 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 33/91 (36%), Positives = 50/91 (54%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
++ I KH L+S+ L I +++HSG R+++ E F S KI+ +VAT
Sbjct: 247 LIFIETKHGAAKLVSQ-LEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGR 515
G+D + V++Y LP +EYV IGR GR
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGR 336
Score = 54 (24.1 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 35/140 (25%), Positives = 60/140 (42%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--ILPGLTLVVCPLVALMI 255
GY Q +AI ++L + + TG GK+ + +P + + G T + AL++
Sbjct: 20 GYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALIL 79
Query: 256 DQLRHLPPVI------HG---GFLSSSQ--RPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
R L + +G G S + +E A+ RLI + VL +P R ++
Sbjct: 80 VPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLID--GVDVLVATPGRLMDL 137
Query: 305 DFLSIFTATSLISLVVVDEA 324
+ I +VV+DEA
Sbjct: 138 -YGQRAVYFEEIEMVVLDEA 156
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 137 (53.3 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 33/91 (36%), Positives = 50/91 (54%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
++ I KH L+S+ L I +++HSG R+++ E F S KI+ +VAT
Sbjct: 247 LIFIETKHGAAKLVSQ-LEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGR 515
G+D + V++Y LP +EYV IGR GR
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGR 336
Score = 54 (24.1 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 35/140 (25%), Positives = 60/140 (42%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--ILPGLTLVVCPLVALMI 255
GY Q +AI ++L + + TG GK+ + +P + + G T + AL++
Sbjct: 20 GYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALIL 79
Query: 256 DQLRHLPPVI------HG---GFLSSSQ--RPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
R L + +G G S + +E A+ RLI + VL +P R ++
Sbjct: 80 VPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLID--GVDVLVATPGRLMDL 137
Query: 305 DFLSIFTATSLISLVVVDEA 324
+ I +VV+DEA
Sbjct: 138 -YGQRAVYFEEIEMVVLDEA 156
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 146 (56.5 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 83/380 (21%), Positives = 149/380 (39%)
Query: 186 DENLGR-LLRLVYGYDSFRDGQLE--AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
D NL LLR +Y Y + ++ AI + + +G GK+ + I IL
Sbjct: 37 DMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAIS--ILQQ 94
Query: 243 LTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQRP----EEVAETIRLIQVGAIK 292
L + + AL++ R L I G ++ ++ V ++ +Q A
Sbjct: 95 LEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 154
Query: 293 VLFVSPERFLNADFLSI-FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXN 351
++ +P R D L+ + + I + V+DEA S F+ N
Sbjct: 155 IVVGTPGRVF--DMLNRRYLSPKWIKMFVLDEAD--EMLSRGFKDQIYEIFQKLST---N 207
Query: 352 VECILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVD 411
++ +L + L + P+ L++K +L L+ N + E +D
Sbjct: 208 IQVVL-LSATMPMDVLEVTKKFMREPIRILVKKEEL--TLEGIKQFYINVEREEWK--LD 262
Query: 412 EVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
+ + + + + D ++ + +V + H + K+R I F S
Sbjct: 263 TLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 322
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531
RV++ T G+D + V VI+Y LP + E Y+ IGR GR GR F+ +
Sbjct: 323 SSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDK 382
Query: 532 FRLRSL--MYSDGVDEYAIN 549
LR + Y+ V+E +N
Sbjct: 383 RILRDIETFYNTTVEEMPMN 402
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 132 (51.5 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 47/176 (26%), Positives = 82/176 (46%)
Query: 400 NNRQNERSAYVD------EVFSFHRSSKHYY---ILQISGKHFETDLISRYLCD-NSISV 449
N N+ + +VD ++F RS H+ ++ +S + DL++ + +
Sbjct: 327 NKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSR-VGADLLANAITVVTGVKA 385
Query: 450 KSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQE 509
S H P K+R + F ++ V+V+T G G+D V VI + +P +++EY+
Sbjct: 386 LSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHV 445
Query: 510 IGRAGRDGRLSYCHLFL--DDITYFR-LRSLMYSDGVDEYAINKFLCQVFTNGMNS 562
IGRA R G +F+ DD F L + + S G AI K L + + M++
Sbjct: 446 IGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGA---AIPKELINLTSREMHN 498
Score = 62 (26.9 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 192 LLRL-VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIP 236
LL L GYD Q++AI L KS + TG+GK+ + +P
Sbjct: 122 LLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVP 167
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 147 (56.8 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 37/116 (31%), Positives = 58/116 (50%)
Query: 403 QNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS 462
+ E+ A+++ F K I+ + GK D I+ L + V+S H DR
Sbjct: 467 EEEKKAFMEN-FIDSMKPKDKAIIFV-GKKSTADDIASDLGVQGVPVQSLHGDREQCDRE 524
Query: 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
+ + F K+R++VAT GLD D+ V ++ P ++EEYV +GR GR GR
Sbjct: 525 QALDDFKKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGR 580
Score = 49 (22.3 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
Q +A ++L + + TG GK+L Y +P I
Sbjct: 267 QSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFI 300
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 147 (56.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 69/327 (21%), Positives = 136/327 (41%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP---LVALMIDQLRHLP 262
Q + M L + + + TG+GK+L Y +PA++ ++ P + L++ R L
Sbjct: 152 QSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELA 211
Query: 263 PVIHGGFLSSSQRPEEVAET-----------IRLIQVGAIKVLFVSPERFLNADFL-SIF 310
I +S + + T IR + G ++V +P R + D L S
Sbjct: 212 VQIQAE-ISKFGKSSRIRNTCVYGGVPKGPQIRDLSRG-VEVCIATPGRLI--DMLESGK 267
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRDV 370
T ++ +V+DEA + + F P + +
Sbjct: 268 TNLRRVTYLVLDEADRMLDMG--FEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADFL 325
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+++ + +L A R Q+ +S + +++ ++++V + SK+ ++ +
Sbjct: 326 QDFIQVNIGSLDLSANHRIT-QIVEVVSESEKRDRMIRHMEKVMD-GKDSKNKILIFVGT 383
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K D I+R+L + S H +R + + F + K ++VAT G+D R+
Sbjct: 384 KRV-ADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRN 442
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
+ V++Y P + E+Y+ IGR GR G
Sbjct: 443 ITHVLNYDYPNNSEDYIHRIGRTGRAG 469
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 82/345 (23%), Positives = 144/345 (41%)
Query: 192 LLRLV--YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM-----ILPGLT 244
LLR + GY Q +AI ++L + M+ TG GK+ + +P + P L
Sbjct: 21 LLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQ 80
Query: 245 LVVCPLV-ALMIDQLRHLPPVI------HGGFLSSSQRPEEVAETIRLIQVGAIK----V 293
P++ AL++ R L + +G +L +I+ Q+ ++ +
Sbjct: 81 RSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKP-QINHLRRGVDI 139
Query: 294 LFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVE 353
L +P R L+ + S + V+DEA + + F P N+
Sbjct: 140 LVATPGRLLDLVNQGVLNL-SRVEFFVLDEADRMLDMG--FLPDIRRILKLLPESRQNL- 195
Query: 354 CILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVS--LSGNNRQNERSAYVD 411
+ + L D + L P LI+ A+ R+ ++ + +RQ +R
Sbjct: 196 -LFSATFSKEIKELTDKL--LHSPA--LIEVAR-RNTAAARITHVVHPVDRQRKR----- 244
Query: 412 EVFSFHRSSKHY-YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS 470
E+ SF SK++ +L + + +S+ L + +S + H R R F
Sbjct: 245 ELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ 304
Query: 471 NKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGR 515
KIRV+VAT GLD + VI++ LP++ ++YV +GR GR
Sbjct: 305 GKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGR 349
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 82/345 (23%), Positives = 144/345 (41%)
Query: 192 LLRLV--YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM-----ILPGLT 244
LLR + GY Q +AI ++L + M+ TG GK+ + +P + P L
Sbjct: 21 LLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQ 80
Query: 245 LVVCPLV-ALMIDQLRHLPPVI------HGGFLSSSQRPEEVAETIRLIQVGAIK----V 293
P++ AL++ R L + +G +L +I+ Q+ ++ +
Sbjct: 81 RSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKP-QINHLRRGVDI 139
Query: 294 LFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVE 353
L +P R L+ + S + V+DEA + + F P N+
Sbjct: 140 LVATPGRLLDLVNQGVLNL-SRVEFFVLDEADRMLDMG--FLPDIRRILKLLPESRQNL- 195
Query: 354 CILAMXXXXXXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVS--LSGNNRQNERSAYVD 411
+ + L D + L P LI+ A+ R+ ++ + +RQ +R
Sbjct: 196 -LFSATFSKEIKELTDKL--LHSPA--LIEVAR-RNTAAARITHVVHPVDRQRKR----- 244
Query: 412 EVFSFHRSSKHY-YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS 470
E+ SF SK++ +L + + +S+ L + +S + H R R F
Sbjct: 245 ELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ 304
Query: 471 NKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGR 515
KIRV+VAT GLD + VI++ LP++ ++YV +GR GR
Sbjct: 305 GKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGR 349
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 140 (54.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
H D I+ L + V+S H DR + + F K+R++VAT GLD D+
Sbjct: 307 HVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVHDI 366
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGR 518
V ++ P ++EEYV +GR GR GR
Sbjct: 367 THVFNFDFPRNIEEYVHRVGRTGRAGR 393
Score = 51 (23.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 35/148 (23%), Positives = 60/148 (40%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-------------PGLTLVVCPLVA 252
Q +A ++L + + TG GK+L Y +P I PG+ LV+ P
Sbjct: 80 QSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPKDKRGGPGM-LVLAPTRE 138
Query: 253 LMIDQLRHLPPVIHGGFLSSS-QRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L + + GF S + I ++ G + ++ +P R LN ++ F
Sbjct: 139 LALQVEAECLKYTYKGFKSICIYGGGDRKAQINVVTKG-VDIVIATPGR-LNDLQMNNFI 196
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYM 339
I+ +V+DEA + + F P M
Sbjct: 197 NLKSITYLVLDEADRMLDMG--FEPQIM 222
>UNIPROTKB|J9P4L6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AAEX03026218 Ensembl:ENSCAFT00000021498 Uniprot:J9P4L6
Length = 598
Score = 113 (44.8 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 29/91 (31%), Positives = 41/91 (45%)
Query: 447 ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY 506
I+V H+ + R F + KI V++ T G+D + V VI+Y P S EY
Sbjct: 436 INVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEY 495
Query: 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
+ IGR GR G F + LRS+
Sbjct: 496 IHRIGRTGRAGHKGKAVTFFTEDDKPLLRSV 526
Score = 84 (34.6 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 39/135 (28%), Positives = 59/135 (43%)
Query: 191 RLLRLVY--GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
RLL+ + G+ + Q++AI ++L + + PTG+GK+L + IP IL L
Sbjct: 174 RLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIP--ILMQLKQPTN 231
Query: 249 P-LVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
AL+I R L IH + S E I +I A+ P+ D L
Sbjct: 232 KGFRALIISPTRELANQIHRELVKIS---EGTGFRIHMIHKAAVAAKKFGPKSSKKFDIL 288
Query: 308 SIFTATSLISLVVVD 322
+ T LI L+ D
Sbjct: 289 -VTTPNRLIYLLKQD 302
Score = 41 (19.5 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 74 KIQKPSLRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAKLRKCNGE 132
KI+ ++ EN T + + + K + F K K I++ D+P P A ++ + E
Sbjct: 114 KIEDKKIKRENKL---TSGKLENLRKEKINFFRNKHK-IHVQGTDLPDPIATFQQLDQE 168
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 113 (44.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 29/91 (31%), Positives = 41/91 (45%)
Query: 447 ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY 506
I+V H+ + R F + KI V++ T G+D + V VI+Y P S EY
Sbjct: 439 INVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEY 498
Query: 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
+ IGR GR G F + LRS+
Sbjct: 499 IHRIGRTGRAGHKGKAVTFFTEDDKPLLRSV 529
Score = 84 (34.6 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 39/135 (28%), Positives = 59/135 (43%)
Query: 191 RLLRLVY--GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
RLL+ + G+ + Q++AI ++L + + PTG+GK+L + IP IL L
Sbjct: 177 RLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIP--ILMQLKQPTN 234
Query: 249 P-LVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
AL+I R L IH + S E I +I A+ P+ D L
Sbjct: 235 KGFRALIISPTRELANQIHRELVKIS---EGTGFRIHMIHKAAVAAKKFGPKSSKKFDIL 291
Query: 308 SIFTATSLISLVVVD 322
+ T LI L+ D
Sbjct: 292 -VTTPNRLIYLLKQD 305
Score = 41 (19.5 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 74 KIQKPSLRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAKLRKCNGE 132
KI+ ++ EN T + + + K + F K K I++ D+P P A ++ + E
Sbjct: 117 KIEDKKIKRENKL---TSGKLENLRKEKINFFRNKHK-IHVQGTDLPDPIATFQQLDQE 171
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 142 (55.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 35/125 (28%), Positives = 59/125 (47%)
Query: 404 NERSAYVDEVFSFHRSS--KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDR 461
+ R V E+ +F ++ ++Y ++ D +S C I+ + H G DR
Sbjct: 318 DSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDR 377
Query: 462 SRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSY 521
+ S +++++VAT G+D D+ V++Y P +EEYV +GR GR GR
Sbjct: 378 EMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGE 437
Query: 522 CHLFL 526
FL
Sbjct: 438 AMSFL 442
Score = 50 (22.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
G++ Q + ++L + + V TG+GK+L + +PA++
Sbjct: 103 GFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALL 144
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 44/187 (23%), Positives = 83/187 (44%)
Query: 370 VMSALEIPLSNL-IQKAQLRDNLQLSVSLSGNNR---QNERSAY-VDEVFSFHRSSKHYY 424
V+ + +P L + K +RD +++ ++L G + ER + +D + + +
Sbjct: 210 VLLSATMPSDVLEVTKKFMRDPIRIXLTLEGIRQFYINVEREEWKLDTLCDLYETLTITQ 269
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ + D ++ + +V + H + K+R I F S RV++ T
Sbjct: 270 AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 329
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDG 542
G+D + V VI+Y LP + E Y+ IGR GR GR + + LR + Y+
Sbjct: 330 GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 389
Query: 543 VDEYAIN 549
++E +N
Sbjct: 390 IEEMPLN 396
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 148 (57.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 34/94 (36%), Positives = 47/94 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 554 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQH 613
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI++ LP +++EYV IGR GR G F D
Sbjct: 614 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 647
Score = 48 (22.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MILPGLT 244
GY Q +I ++ + M TG+GK+ + +P M+ G+T
Sbjct: 309 GYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGIT 358
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 148 (57.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 34/94 (36%), Positives = 47/94 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC IS S H ++R + F K V+VAT GLD +V
Sbjct: 554 KADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQH 613
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI++ LP +++EYV IGR GR G F D
Sbjct: 614 VINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 647
Score = 48 (22.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MILPGLT 244
GY Q +I ++ + M TG+GK+ + +P M+ G+T
Sbjct: 309 GYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGIT 358
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 127 (49.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 453 HSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGR 512
H IP R R+ + F KI+ ++AT GLD V V +Y +PE +E Y+ IGR
Sbjct: 275 HGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGR 334
Query: 513 AGRDG 517
GR G
Sbjct: 335 TGRAG 339
Score = 64 (27.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 34/129 (26%), Positives = 64/129 (49%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--ILPGLT----LVVCPL--VALMID- 256
Q +AI ++L K + TG GK+L + +P + I P + L+V P +AL I
Sbjct: 32 QEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITT 91
Query: 257 QLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT-SL 315
+++ + + + ++VA+ +R ++ G ++ +P R L D + T S
Sbjct: 92 EIKKMLVQREDINVLAIYGGQDVAQQLRKLK-GNTHIVVATPGRLL--DHIRRETIDLSN 148
Query: 316 ISLVVVDEA 324
+S +V+DEA
Sbjct: 149 LSTIVLDEA 157
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 127 (49.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 453 HSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGR 512
H IP R R+ + F KI+ ++AT GLD V V +Y +PE +E Y+ IGR
Sbjct: 275 HGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGR 334
Query: 513 AGRDG 517
GR G
Sbjct: 335 TGRAG 339
Score = 64 (27.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 34/129 (26%), Positives = 64/129 (49%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--ILPGLT----LVVCPL--VALMID- 256
Q +AI ++L K + TG GK+L + +P + I P + L+V P +AL I
Sbjct: 32 QEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITT 91
Query: 257 QLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT-SL 315
+++ + + + ++VA+ +R ++ G ++ +P R L D + T S
Sbjct: 92 EIKKMLVQREDINVLAIYGGQDVAQQLRKLK-GNTHIVVATPGRLL--DHIRRETIDLSN 148
Query: 316 ISLVVVDEA 324
+S +V+DEA
Sbjct: 149 LSTIVLDEA 157
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 112 (44.5 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 29/91 (31%), Positives = 41/91 (45%)
Query: 447 ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY 506
I+V H+ + R F + KI V++ T G+D + V VI+Y P S EY
Sbjct: 329 INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEY 388
Query: 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
+ IGR GR G F + LRS+
Sbjct: 389 IHRIGRTGRAGNKGKAITFFTEDDKPLLRSV 419
Score = 84 (34.6 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 35/118 (29%), Positives = 51/118 (43%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP-LVALMIDQLRHLPPV 264
Q++AI ++L + + PTG+GK+L + IP IL L AL+I R L
Sbjct: 84 QMQAIPVMLHGRELLASAPTGSGKTLAFSIP--ILMQLKQPANKGFRALIISPTRELASQ 141
Query: 265 IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVD 322
IH + S E I +I A+ P+ D L + T LI L+ D
Sbjct: 142 IHRELIKIS---EGTGFRIHMIHKAAVAAKKFGPKSSKKFDIL-VTTPNRLIYLLKQD 195
Score = 38 (18.4 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 105 FAKKKKQINLVSVDVPLPPAKLRKCNGE 132
F + K +I++ D+P P A ++ + E
Sbjct: 34 FLRNKHKIHVQGTDLPDPIATFQQLDQE 61
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 124 (48.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 447 ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY 506
I+V H+ + R + F + KI V++ T G+D + V VI+Y LP S EY
Sbjct: 432 INVDVIHADKTQQQRDNVVHSFRAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEY 491
Query: 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
+ IGR GR G F + LRS+
Sbjct: 492 IHRIGRTGRAGHTGKAVTFFTEDDKPLLRSI 522
Score = 70 (29.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 37/132 (28%), Positives = 60/132 (45%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LP---GL-TLVVCPLVALMIDQL 258
Q++AI ++L + + PTG+GK+L + IP + P G L++ P L
Sbjct: 186 QMQAIPVMLHGRELLASAPTGSGKTLAFCIPLLTHLKQPMNKGFRALIISPTRELASQTH 245
Query: 259 RHLPPVIHG-GF-LSSSQRPEEVAETIRLIQVGA-IKVLFVSPERF---LNADFLSIFTA 312
R L + G GF + Q+ E A+ + +L +P R L D +I
Sbjct: 246 RELVKLADGTGFRIHMIQKASEAAKKFGPKSSRKFVDILVTTPNRLIYLLKQDPPAI-DL 304
Query: 313 TSLISLVVVDEA 324
TS + +VVDE+
Sbjct: 305 TS-VEWLVVDES 315
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 143 (55.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 32/114 (28%), Positives = 56/114 (49%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +N +V H + +R I F S RV++ T G+D + V
Sbjct: 280 KVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSL 339
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVDE 545
VI+Y LP + E Y+ IGR+GR GR F+ + +L+ + Y+ ++E
Sbjct: 340 VINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIESYYTTQIEE 393
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 136 (52.9 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 29/93 (31%), Positives = 45/93 (48%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +LC N S H ++R + F S + ++VAT GLD V V+
Sbjct: 432 DSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVV 491
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +++YV IGR GR G+ F +D
Sbjct: 492 NFDLPNDIDDYVHRIGRTGRAGKSGLATAFFND 524
Score = 53 (23.7 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKS--LCYQIPAMIL-------PGLTLVVCPLVALMID 256
Q AI ++L+ + M TG+GK+ C+ I + I+ P + V PL A+++
Sbjct: 186 QRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPL-AVILS 244
Query: 257 QLRHLPPVIH 266
R L IH
Sbjct: 245 PTRELASQIH 254
Score = 47 (21.6 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 22/68 (32%), Positives = 31/68 (45%)
Query: 82 FENDQSLPTPSNPQGINE-IKSDAFAKKKKQINLVSVDVPLPPAKLRKCN-GEGNFVRLN 139
FEND S P P+ + N I DA+ + I +VP P + + GE LN
Sbjct: 118 FENDDSEPEPAFTEQDNTVINFDAY--EDIPIETSGDNVPPPVNTFAEIDLGEA----LN 171
Query: 140 LNNNKRKF 147
LN + K+
Sbjct: 172 LNIRRCKY 179
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 123 (48.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 40/142 (28%), Positives = 65/142 (45%)
Query: 384 KAQLRDNLQLSVSLSGNNR-QNERSAY-VDE----VFSFH--RSSKHYYILQISGKHFET 435
K LRD ++ V+ Q E+ Y +D F H RS +L S
Sbjct: 199 KNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGV 258
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D ++ L ++ +S+H + R ++ + F ++V+VAT GLD ++ VI
Sbjct: 259 DKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVI 318
Query: 496 HYSLPESLEEYVQEIGRAGRDG 517
++ LP E+Y+ IGR GR G
Sbjct: 319 NFELPFIAEDYIHRIGRTGRAG 340
Score = 66 (28.3 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL 240
GY Q+EAI +L K+ M TG GK+ + +P + L
Sbjct: 20 GYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQL 62
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 123 (48.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 40/142 (28%), Positives = 65/142 (45%)
Query: 384 KAQLRDNLQLSVSLSGNNR-QNERSAY-VDE----VFSFH--RSSKHYYILQISGKHFET 435
K LRD ++ V+ Q E+ Y +D F H RS +L S
Sbjct: 199 KNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGV 258
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D ++ L ++ +S+H + R ++ + F ++V+VAT GLD ++ VI
Sbjct: 259 DKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVI 318
Query: 496 HYSLPESLEEYVQEIGRAGRDG 517
++ LP E+Y+ IGR GR G
Sbjct: 319 NFELPFIAEDYIHRIGRTGRAG 340
Score = 66 (28.3 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL 240
GY Q+EAI +L K+ M TG GK+ + +P + L
Sbjct: 20 GYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQL 62
>UNIPROTKB|F5H2L2 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 GO:GO:0008026 EMBL:AC006559
HGNC:HGNC:9948 ChiTaRS:RECQL IPI:IPI01012611
ProteinModelPortal:F5H2L2 SMR:F5H2L2 Ensembl:ENST00000542432
ArrayExpress:F5H2L2 Bgee:F5H2L2 Uniprot:F5H2L2
Length = 131
Score = 121 (47.7 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
+L+ V+ + FR QLE I + + K LV+PTG GKSLCYQ+PA+
Sbjct: 82 ILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL 128
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 137 (53.3 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 30/104 (28%), Positives = 54/104 (51%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
IL + K + D+I R+L + ++ H +R R +LF ++VAT
Sbjct: 649 ILFVETKR-KADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKNILVATDVAAR 707
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
GLD ++ VI++ LP ++++Y+ IGR GR G + F+++
Sbjct: 708 GLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNE 751
Score = 55 (24.4 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 79 SLRFENDQSLPTPSNPQGINEIK-SDAFAKKKKQINLVSVD--VPLPPAKLRKCNGEGNF 135
+++ EN++ + +N N IK ++ + N+ + + + P K +GNF
Sbjct: 203 NMQMENNRLMFDNNNNNNNNNIKRNNNYMNNNNNNNINNNNGRMEKPRYKPPMLRNQGNF 262
Query: 136 VRLNLNNNKRKFANKGKRNKSF 157
N NN R NKG N +F
Sbjct: 263 NN-NRNNFNRMNFNKGLGNNNF 283
Score = 50 (22.7 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIP 236
YD Q ++ +++++ + V TG+GK+ Y +P
Sbjct: 382 YDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLP 419
Score = 39 (18.8 bits), Expect = 7.8e-05, Sum P(3) = 7.8e-05
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 130 NGEGNFVRLNLNNNKRKFANKGKRNKS 156
N N + + NN+ F N N +
Sbjct: 196 NNVNNLNNMQMENNRLMFDNNNNNNNN 222
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 137 (53.3 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 30/104 (28%), Positives = 54/104 (51%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
IL + K + D+I R+L + ++ H +R R +LF ++VAT
Sbjct: 649 ILFVETKR-KADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKNILVATDVAAR 707
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
GLD ++ VI++ LP ++++Y+ IGR GR G + F+++
Sbjct: 708 GLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNE 751
Score = 55 (24.4 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 79 SLRFENDQSLPTPSNPQGINEIK-SDAFAKKKKQINLVSVD--VPLPPAKLRKCNGEGNF 135
+++ EN++ + +N N IK ++ + N+ + + + P K +GNF
Sbjct: 203 NMQMENNRLMFDNNNNNNNNNIKRNNNYMNNNNNNNINNNNGRMEKPRYKPPMLRNQGNF 262
Query: 136 VRLNLNNNKRKFANKGKRNKSF 157
N NN R NKG N +F
Sbjct: 263 NN-NRNNFNRMNFNKGLGNNNF 283
Score = 50 (22.7 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIP 236
YD Q ++ +++++ + V TG+GK+ Y +P
Sbjct: 382 YDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLP 419
Score = 39 (18.8 bits), Expect = 7.8e-05, Sum P(3) = 7.8e-05
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 130 NGEGNFVRLNLNNNKRKFANKGKRNKS 156
N N + + NN+ F N N +
Sbjct: 196 NNVNNLNNMQMENNRLMFDNNNNNNNN 222
>UNIPROTKB|Q9NZE6 [details] [associations]
symbol:EIF4A2 "BM-010" species:9606 "Homo sapiens"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CH471052 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
HOVERGEN:HBG107989 HSSP:P10081 EMBL:AC112907 UniGene:Hs.518475
UniGene:Hs.599481 HGNC:HGNC:3284 ChiTaRS:EIF4A2 EMBL:AF208852
IPI:IPI00030296 SMR:Q9NZE6 STRING:Q9NZE6 Ensembl:ENST00000356531
UCSC:uc003fqv.3 Uniprot:Q9NZE6
Length = 312
Score = 140 (54.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +V + H + K+R I F S RV++ T G+D + V
Sbjct: 190 KVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 249
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR GR GR F+ + LR + Y+ V+E +N
Sbjct: 250 VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 307
>UNIPROTKB|F1LP27 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00949972 Ensembl:ENSRNOT00000066369 ArrayExpress:F1LP27
Uniprot:F1LP27
Length = 312
Score = 140 (54.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +V + H + K+R I F S RV++ T G+D + V
Sbjct: 190 KVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 249
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR GR GR F+ + LR + Y+ V+E +N
Sbjct: 250 VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 307
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 138 (53.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H +DR F S K ++VAT GLD +V VI
Sbjct: 432 DALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 491
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F ++
Sbjct: 492 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 524
Score = 55 (24.4 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ +K+ M TG+GK+ + +P +
Sbjct: 183 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 215
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 138 (53.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H +DR F S K ++VAT GLD +V VI
Sbjct: 433 DALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 492
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F ++
Sbjct: 493 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 525
Score = 55 (24.4 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ +K+ M TG+GK+ + +P +
Sbjct: 185 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 217
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 139 (54.0 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 35/126 (27%), Positives = 57/126 (45%)
Query: 403 QNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS 462
++++ +++ ++ + S K L D + +L + S H +DR
Sbjct: 466 ESDKRSFLLDLLNATESGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 525
Query: 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
F S K ++VAT GLD +V VI++ LP +EEYV IGR GR G L
Sbjct: 526 EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 585
Query: 523 HLFLDD 528
F ++
Sbjct: 586 TSFFNE 591
Score = 55 (24.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ +K+ M TG+GK+ + +P +
Sbjct: 249 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 281
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 138 (53.6 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H KDR F S + ++VAT GLD +V VI
Sbjct: 454 DSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVI 513
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F ++
Sbjct: 514 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 546
Score = 55 (24.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ +K+ M TG+GK+ + +P +
Sbjct: 206 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238
>SGD|S000003139 [details] [associations]
symbol:ROK1 "RNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0030686
"90S preribosome" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0048254 "snoRNA localization" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000472 "endonucleolytic
cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003139
GO:GO:0005524 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:X85757
GO:GO:0030686 GO:GO:0004004 GO:GO:0000447 GO:GO:0000472
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000480
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG OrthoDB:EOG425926 EMBL:Z34901 EMBL:Z72693 PIR:S59649
RefSeq:NP_011344.1 ProteinModelPortal:P45818 SMR:P45818
DIP:DIP-5111N IntAct:P45818 MINT:MINT-483312 STRING:P45818
PaxDb:P45818 PeptideAtlas:P45818 EnsemblFungi:YGL171W GeneID:852704
KEGG:sce:YGL171W CYGD:YGL171w NextBio:972056 Genevestigator:P45818
GermOnline:YGL171W GO:GO:0048254 Uniprot:P45818
Length = 564
Score = 139 (54.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 80/332 (24%), Positives = 139/332 (41%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--ILP-----GLT-LVVCPLVALMIDQ 257
Q E I + L+ + + PTG+GK+L + IP + I+ GL L++ P L
Sbjct: 149 QCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPTKELANQI 208
Query: 258 LRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGA-IKVLFVSPERFLNADFLSIFTATSLI 316
+ + FL +RP +VA + +GA +K VS +++ D + I T LI
Sbjct: 209 FIECFKLSYKIFLEK-KRPLQVALLSK--SLGAKLKNKVVSDKKY---DII-ISTPLRLI 261
Query: 317 SLVVVDEAHCVSEWSHN--------FRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR 368
VV +EA +S+ H F +++ AM +
Sbjct: 262 D-VVKNEALDLSKVKHLIFDEADKLFDKTFVEQSDDILSACREPSLRKAMFSATIPSNVE 320
Query: 369 DVMSALEI-PLSNLI-QKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
++ ++ + P+ +I K N++ + GN + + + ++ K I+
Sbjct: 321 EIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGN--EEGKLIAIRQLVQ-EGEFKPPIII 377
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+ L + D I+V H+ A R RI E F + ++ ++ T G+
Sbjct: 378 FLESITRAKALYHELMYDR-INVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGI 436
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
D + V VI+Y +P S + YV IGR GR GR
Sbjct: 437 DFKGVNLVINYDVPGSSQAYVHRIGRTGRGGR 468
Score = 52 (23.4 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 84 NDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAKLRKCNGEGNFVRLNLNN 142
ND L P N +++ A K K N+ +D+PLP +F + LNN
Sbjct: 82 NDDGL---IKPVITNTVEASALRKSYKG-NVSGIDIPLPIGSFEDLISRFSFDKRLLNN 136
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 107 (42.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 28/107 (26%), Positives = 51/107 (47%)
Query: 412 EVFSFHRSSKHY-YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS 470
E+ SF S+++ +L + D +++ + + + + H R + F
Sbjct: 235 ELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKE 294
Query: 471 NKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
K+R ++AT G+D + + VI+Y LP + E+YV IGR R G
Sbjct: 295 GKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAG 341
Score = 82 (33.9 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 41/140 (29%), Positives = 62/140 (44%)
Query: 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV-C-P-LVALMI 255
YD + Q ++I ++L K M TG GK+ + +P IL L V C P L AL++
Sbjct: 25 YDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALP--ILQQLISVQPCKPELRALVL 82
Query: 256 DQLRHLPPVIHGGFLSSSQRPE----------EVAETIRLIQVGAIKVLFVSPERFLNAD 305
R L +H F Q + + I ++VG + +L +P R L D
Sbjct: 83 TPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVG-VDILIATPGRLL--D 139
Query: 306 FLSIFTAT-SLISLVVVDEA 324
L + + S I +V DEA
Sbjct: 140 LLRTESVSLSNIETLVFDEA 159
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 107 (42.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 28/107 (26%), Positives = 51/107 (47%)
Query: 412 EVFSFHRSSKHY-YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS 470
E+ SF S+++ +L + D +++ + + + + H R + F
Sbjct: 235 ELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKE 294
Query: 471 NKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
K+R ++AT G+D + + VI+Y LP + E+YV IGR R G
Sbjct: 295 GKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAG 341
Score = 82 (33.9 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 41/140 (29%), Positives = 62/140 (44%)
Query: 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV-C-P-LVALMI 255
YD + Q ++I ++L K M TG GK+ + +P IL L V C P L AL++
Sbjct: 25 YDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALP--ILQQLISVQPCKPELRALVL 82
Query: 256 DQLRHLPPVIHGGFLSSSQRPE----------EVAETIRLIQVGAIKVLFVSPERFLNAD 305
R L +H F Q + + I ++VG + +L +P R L D
Sbjct: 83 TPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVG-VDILIATPGRLL--D 139
Query: 306 FLSIFTAT-SLISLVVVDEA 324
L + + S I +V DEA
Sbjct: 140 LLRTESVSLSNIETLVFDEA 159
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 113 (44.8 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 29/91 (31%), Positives = 41/91 (45%)
Query: 447 ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY 506
I+V H+ + R F + KI V++ T G+D + V VI+Y P S EY
Sbjct: 435 INVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEY 494
Query: 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
+ IGR GR G F + LRS+
Sbjct: 495 IHRIGRTGRAGHKGKAVTFFTEDDKPLLRSV 525
Score = 85 (35.0 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 39/135 (28%), Positives = 59/135 (43%)
Query: 191 RLLRLVY--GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
RLL+ + G+ + Q++AI ++L + + PTG+GK+L + IP IL L
Sbjct: 173 RLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIP--ILMHLKQPTN 230
Query: 249 P-LVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
AL+I R L IH + S E I +I A+ P+ D L
Sbjct: 231 KGFRALIISPTRELASQIHRELVKLS---EGTGFRIHMIHKAAVAAKKFGPKSSKKFDIL 287
Query: 308 SIFTATSLISLVVVD 322
+ T LI L+ D
Sbjct: 288 -VTTPNRLIYLLKQD 301
Score = 37 (18.1 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 105 FAKKKKQINLVSVDVPLPPAKLRKCNGE 132
F + K +I++ D+P P A ++ + E
Sbjct: 140 FFRNKHKIHVQGTDLPDPIATFQQLDQE 167
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 139 (54.0 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H +DR F S + ++VAT GLD +V VI
Sbjct: 487 DALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVI 546
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F +D
Sbjct: 547 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFND 579
Score = 54 (24.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ K+ M TG+GK+ + +P +
Sbjct: 235 QKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVL 267
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 143 (55.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDR-SRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
D++ + + SV H GI DR S I + F + I+V+VAT GLD +++ V
Sbjct: 566 DIVDQLMRTGYNSVAPLHGGIDQHDRDSSIAD-FKTGVIKVLVATSVAARGLDVKNLILV 624
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++Y P E+YV +GR GR GR Y + F+
Sbjct: 625 VNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFV 656
Score = 53 (23.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIP 236
Q +AI ++ + + + TG+GK+L + +P
Sbjct: 331 QAQAIPSIMSGRDVIGIAKTGSGKTLAFLLP 361
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 137 (53.3 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H +DR F S K ++VAT GLD +V VI
Sbjct: 453 DSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 512
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F ++
Sbjct: 513 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 545
Score = 55 (24.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ +K+ M TG+GK+ + +P +
Sbjct: 205 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 237
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 137 (53.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H +DR F S K ++VAT GLD +V VI
Sbjct: 454 DSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 513
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F ++
Sbjct: 514 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 546
Score = 55 (24.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ +K+ M TG+GK+ + +P +
Sbjct: 206 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 137 (53.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H +DR F S K ++VAT GLD +V VI
Sbjct: 454 DSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 513
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F ++
Sbjct: 514 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 546
Score = 55 (24.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ +K+ M TG+GK+ + +P +
Sbjct: 206 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 137 (53.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H +DR F S K ++VAT GLD +V VI
Sbjct: 455 DSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F ++
Sbjct: 515 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 547
Score = 55 (24.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ +K+ M TG+GK+ + +P +
Sbjct: 207 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 137 (53.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H +DR F S K ++VAT GLD +V VI
Sbjct: 455 DSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F ++
Sbjct: 515 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 547
Score = 55 (24.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ +K+ M TG+GK+ + +P +
Sbjct: 207 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 137 (53.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H +DR F S K ++VAT GLD +V VI
Sbjct: 455 DSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F ++
Sbjct: 515 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 547
Score = 55 (24.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ +K+ M TG+GK+ + +P +
Sbjct: 207 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 137 (53.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H +DR F S K ++VAT GLD +V VI
Sbjct: 455 DSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F ++
Sbjct: 515 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 547
Score = 55 (24.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ +K+ M TG+GK+ + +P +
Sbjct: 207 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 137 (53.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H +DR F S K ++VAT GLD +V VI
Sbjct: 455 DSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 514
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F ++
Sbjct: 515 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 547
Score = 55 (24.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
Q AI ++ +K+ M TG+GK+ + +P +
Sbjct: 207 QKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 143 (55.4 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 73/329 (22%), Positives = 138/329 (41%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP---LVALMIDQLRHLP 262
Q + M L + + + TG+GK+L Y +PA++ ++ P + L++ R L
Sbjct: 167 QSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELA 226
Query: 263 PVIHGGFLSSSQRPEEVAET-----------IRLIQVGAIKVLFVSPERFLNADFLSIF- 310
I +S + + T IR + G ++V +P R + D L
Sbjct: 227 VQIQAE-ISKFGKSSRIRNTCVYGGVPKGPQIRDLSRG-VEVCIATPGRLI--DMLEAGR 282
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLR-D 369
T ++ +V+DEA + + F P C+ + L D
Sbjct: 283 TNLRRVTYLVLDEADRMLDMG--FEPQIRKIISQIRPDRQT--CMWSATWPKEVRQLASD 338
Query: 370 VMSA-LEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
++ +++ + ++ A R Q+ +S +++ +++++ +R +K L
Sbjct: 339 FLNNYIQVNIGSMDLSANHRIT-QIVEVISEFEKRDRMIKHLEKIME-NRGNK---CLVF 393
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+G D I+R+L + S H ++R + F + K ++VAT G+D
Sbjct: 394 TGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDV 453
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
RD+ VI+Y P + E+YV IGR GR G
Sbjct: 454 RDITHVINYDYPNNSEDYVHRIGRTGRAG 482
>UNIPROTKB|H0Y400 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 EMBL:AL662847 EMBL:AL662801
EMBL:CR753892 EMBL:BX001040 EMBL:BX248516 EMBL:BX927320
EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B
EMBL:CR942185 EMBL:CT009531 Ensembl:ENST00000412386
Ensembl:ENST00000417023 Ensembl:ENST00000417995
Ensembl:ENST00000422243 Ensembl:ENST00000428107
Ensembl:ENST00000433293 Ensembl:ENST00000445602
Ensembl:ENST00000455400 Uniprot:H0Y400
Length = 187
Score = 129 (50.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 438 ISRYLCDNSISVKSYHSGIPAKDR-SRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH 496
+++ L + + + H G+P ++R SR Q+ F + R++VAT FG G+D V +
Sbjct: 67 LAQLLVEQNFPAIAIHRGMPQEERLSRYQQ-FKDFQRRILVATNLFGRGMDIERVNIAFN 125
Query: 497 YSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
Y +PE + Y+ + RAGR G F+ D
Sbjct: 126 YDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 157
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 146 (56.5 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 34/102 (33%), Positives = 50/102 (49%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ K D++ R L S S H GI DR F S K+R+++AT
Sbjct: 760 IIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAAR 819
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
GLD +D+ V++Y +P E+YV GR GR G+ + F+
Sbjct: 820 GLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFI 861
Score = 52 (23.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIP 236
G++ Q +AI ++ + + + TG+GK+L + +P
Sbjct: 529 GFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILP 567
>TIGR_CMR|SPO_3098 [details] [associations]
symbol:SPO_3098 "ATP-dependent helicase, DEAD/DEAH box
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR013701
InterPro:IPR017170 Pfam:PF00270 Pfam:PF00271 Pfam:PF08494
PIRSF:PIRSF037307 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03724 RefSeq:YP_168301.1 ProteinModelPortal:Q5LNV5
GeneID:3195597 KEGG:sil:SPO3098 PATRIC:23379641
HOGENOM:HOG000036041 OMA:SYEDAPR ProtClustDB:CLSK2308438
InterPro:IPR026362 TIGRFAMs:TIGR04121 Uniprot:Q5LNV5
Length = 802
Score = 106 (42.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 444 DNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESL 503
D + + +H + R R++ ++R +V T + +G+D DV VI P+++
Sbjct: 271 DEGLPIGIHHGSLDRAQRERVEAAMVRGELRAIVCTGSLDLGIDWGDVDLVIQIGAPKNV 330
Query: 504 EEYVQEIGRA 513
+ VQ IGRA
Sbjct: 331 KRLVQRIGRA 340
Score = 89 (36.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 38/126 (30%), Positives = 58/126 (46%)
Query: 215 DKKSTMLVLPTGAGKSLCYQIPAMIL------PGL-TLVVCPLVALMIDQLRHL-PPVIH 266
D+ +T+L+ PTG GK++ +P + GL TL V PL AL D R+L PV
Sbjct: 31 DRPATLLIAPTGGGKTMAGFLPTLAELAEGQHQGLHTLYVSPLKALAADIKRNLRTPVDE 90
Query: 267 GGF-LSSSQRPEEVAETIRLIQ-VGAIKVLFVSPERF-LNADFLSIFTATSLISLVVVDE 323
G + R + + T + Q +L +PE L + + + VVVDE
Sbjct: 91 IGLAVRIEDRTGDTSATQKKRQRADPPHILLTTPESLALLTSYEDAPRMFAGLRRVVVDE 150
Query: 324 AHCVSE 329
H ++E
Sbjct: 151 IHALAE 156
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 112 (44.5 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 29/91 (31%), Positives = 41/91 (45%)
Query: 447 ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY 506
I+V H+ + R F + KI V++ T G+D + V VI+Y P S EY
Sbjct: 438 INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEY 497
Query: 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
+ IGR GR G F + LRS+
Sbjct: 498 IHRIGRTGRAGNRGKAVTFFTEDDKPLLRSV 528
Score = 85 (35.0 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 36/118 (30%), Positives = 51/118 (43%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP-LVALMIDQLRHLPPV 264
Q++AI ++L + + PTG+GK+L + IP IL L AL+I R L
Sbjct: 193 QMQAIPVMLHGRELLASAPTGSGKTLAFSIP--ILMQLKQPTNKGFRALVISPTRELASQ 250
Query: 265 IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVD 322
IH + S E I +I AI P+ D L + T LI L+ D
Sbjct: 251 IHRELIKIS---EGTGFRIHMIHKAAIAAKKFGPKSSKKFDIL-VTTPNRLIYLLKQD 304
Score = 37 (18.1 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 105 FAKKKKQINLVSVDVPLPPAKLRKCNGE 132
F + K +I++ D+P P A ++ + E
Sbjct: 143 FFRNKHKIHVQGTDLPDPIATFQQLDQE 170
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 112 (44.5 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 29/91 (31%), Positives = 41/91 (45%)
Query: 447 ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY 506
I+V H+ + R F + KI V++ T G+D + V VI+Y P S EY
Sbjct: 437 INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEY 496
Query: 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
+ IGR GR G F + LRS+
Sbjct: 497 IHRIGRTGRAGNKGKAITFFTEDDKPLLRSV 527
Score = 84 (34.6 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 35/118 (29%), Positives = 51/118 (43%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP-LVALMIDQLRHLPPV 264
Q++AI ++L + + PTG+GK+L + IP IL L AL+I R L
Sbjct: 192 QMQAIPVMLHGRELLASAPTGSGKTLAFSIP--ILMQLKQPANKGFRALIISPTRELASQ 249
Query: 265 IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVD 322
IH + S E I +I A+ P+ D L + T LI L+ D
Sbjct: 250 IHRELIKIS---EGTGFRIHMIHKAAVAAKKFGPKSSKKFDIL-VTTPNRLIYLLKQD 303
Score = 38 (18.4 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 105 FAKKKKQINLVSVDVPLPPAKLRKCNGE 132
F + K +I++ D+P P A ++ + E
Sbjct: 142 FLRNKHKIHVQGTDLPDPIATFQQLDQE 169
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 153 (58.9 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC + S H ++R + F S K V+VAT GLD DV
Sbjct: 445 QADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVATSVASRGLDIPDVQH 504
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD-DITYFRLRSLM 538
V+++ LP ++++YV IGR GR G F D D+ RSL+
Sbjct: 505 VVNFDLPNTIDDYVHRIGRTGRCGNTGRAVSFYDPDVDSQLARSLV 550
Score = 37 (18.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
GY Q + ++ + M TG+GK+ + +P +
Sbjct: 200 GYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPIL 240
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 144 (55.7 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D I+ +LC + S H K+R F + + V+VAT GLD +V
Sbjct: 550 KADFIATFLCQEKVPSTSIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSY 609
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VI++ +P+ ++EYV IGR GR G F D
Sbjct: 610 VINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFD 643
Score = 48 (22.0 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
GY Q +I +++ + M TG+GK+ + +P +
Sbjct: 305 GYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPIL 345
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 156 (60.0 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 70/339 (20%), Positives = 148/339 (43%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--IL---P-----G-LTLVVCPLVALM 254
Q++ I ++ + + + TG+GK+L Y P + +L P G +++++ P L
Sbjct: 750 QMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNNDGPISIILTPTRELS 809
Query: 255 IDQLRHLPPVIHGGF---LSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
I Q+++ + + + +A +++++ G +++L +P R ++ +S
Sbjct: 810 I-QVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKG-VEILVGTPGRIIDILTISNCK 867
Query: 312 ATSL--ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
T+L +S VV+DEA + + S + AM +++
Sbjct: 868 VTNLNRVSFVVLDEADRLLDLGFE---SQIYNILRNCRKDKQT----AMISATFPNYIQN 920
Query: 370 VMSALEI-PLSNLI-QKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+ L P+ ++ +K + +N+ V + +++ R + K+ +L
Sbjct: 921 MAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLLKL-----LGEWIKYGLVLI 975
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
K E DL+ L ++ H G DR E F + +V++AT G+D
Sbjct: 976 FVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMARGID 1035
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+++ VI+Y P+ +E+Y+ IGR GR + Y + F+
Sbjct: 1036 IKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFI 1074
Score = 43 (20.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 128 KCNGEGNFVRLNLNNNKRKFANKGKRNKSF 157
K N + N NL ++K K NKG + SF
Sbjct: 610 KRNEKDNMNESNLTDSKNKKQNKGS-DASF 638
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 156 (60.0 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 70/339 (20%), Positives = 148/339 (43%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM--IL---P-----G-LTLVVCPLVALM 254
Q++ I ++ + + + TG+GK+L Y P + +L P G +++++ P L
Sbjct: 750 QMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNNDGPISIILTPTRELS 809
Query: 255 IDQLRHLPPVIHGGF---LSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
I Q+++ + + + +A +++++ G +++L +P R ++ +S
Sbjct: 810 I-QVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKG-VEILVGTPGRIIDILTISNCK 867
Query: 312 ATSL--ISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
T+L +S VV+DEA + + S + AM +++
Sbjct: 868 VTNLNRVSFVVLDEADRLLDLGFE---SQIYNILRNCRKDKQT----AMISATFPNYIQN 920
Query: 370 VMSALEI-PLSNLI-QKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+ L P+ ++ +K + +N+ V + +++ R + K+ +L
Sbjct: 921 MAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLLKL-----LGEWIKYGLVLI 975
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
K E DL+ L ++ H G DR E F + +V++AT G+D
Sbjct: 976 FVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMARGID 1035
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+++ VI+Y P+ +E+Y+ IGR GR + Y + F+
Sbjct: 1036 IKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFI 1074
Score = 43 (20.2 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 128 KCNGEGNFVRLNLNNNKRKFANKGKRNKSF 157
K N + N NL ++K K NKG + SF
Sbjct: 610 KRNEKDNMNESNLTDSKNKKQNKGS-DASF 638
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +V + H + K+R I F S RV++ T G+D + V
Sbjct: 285 KVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 344
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR GR GR F+ + LR + Y+ V+E +N
Sbjct: 345 VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +V + H + K+R I F S RV++ T G+D + V
Sbjct: 285 KVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 344
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR GR GR F+ + LR + Y+ V+E +N
Sbjct: 345 VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +V + H + K+R I F S RV++ T G+D + V
Sbjct: 285 KVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 344
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR GR GR F+ + LR + Y+ V+E +N
Sbjct: 345 VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +V + H + K+R I F S RV++ T G+D + V
Sbjct: 285 KVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 344
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR GR GR F+ + LR + Y+ V+E +N
Sbjct: 345 VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +V + H + K+R I F S RV++ T G+D + V
Sbjct: 285 KVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 344
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR GR GR F+ + LR + Y+ V+E +N
Sbjct: 345 VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +V + H + K+R I F S RV++ T G+D + V
Sbjct: 285 KVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 344
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR GR GR F+ + LR + Y+ V+E +N
Sbjct: 345 VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 402
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 140 (54.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +V + H + K+R I F S RV++ T G+D + V
Sbjct: 286 KVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 345
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL--MYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR GR GR F+ + LR + Y+ V+E +N
Sbjct: 346 VINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMN 403
WARNING: HSPs involving 187 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 815 749 0.00089 121 3 11 22 0.37 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 437
No. of states in DFA: 621 (66 KB)
Total size of DFA: 371 KB (2184 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 58.93u 0.19s 59.12t Elapsed: 00:00:03
Total cpu time: 58.97u 0.19s 59.16t Elapsed: 00:00:03
Start: Sat May 11 13:25:20 2013 End: Sat May 11 13:25:23 2013
WARNINGS ISSUED: 2