BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036378
(815 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225425865|ref|XP_002266225.1| PREDICTED: ATP-dependent DNA helicase Q-like 5-like [Vitis
vinifera]
Length = 941
Score = 1058 bits (2737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/813 (66%), Positives = 616/813 (75%), Gaps = 47/813 (5%)
Query: 44 RSFSQNPSISAFKSLETLPAGFCFRLASFTKIQKPSLR---FENDQSLP---TPSNPQGI 97
R QN I A S ETLPAG+ ++ASF+K+QKP + EN+ SL TP P
Sbjct: 106 RFSGQNHPIYAVNSFETLPAGYFSKVASFSKLQKPCPKPDPVENEPSLASGLTPKQPHAC 165
Query: 98 NEIKSDAFAK-KKKQINLVSVDVPLPPAKLRKCNGEGNFVRLNLNNNKRKFANKGKRNKS 156
+ + + K KK NL+ DV P K KC EGNFVRLN+N RKF NKGKR KS
Sbjct: 166 EAVSTGSAVKFVKKHCNLIGSDVNPKPVKRPKCGSEGNFVRLNINGYGRKFTNKGKR-KS 224
Query: 157 FRGKLSYR----------------------------------RTASELELVEEAVRAVRD 182
+ R R + EL+E A V++
Sbjct: 225 YNASSGARRTFRRTKRKSKAEGGAEEDEDGLVLETPTMEKQGRVKFDGELIEAAALEVQN 284
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
EASDE L +LL L +GYDSFRDGQLEAI+MVL+ KSTMLVLPTGAGKSLCYQ+PA++LPG
Sbjct: 285 EASDEKLVKLLGLTHGYDSFRDGQLEAIRMVLEGKSTMLVLPTGAGKSLCYQLPALVLPG 344
Query: 243 LTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
+TLVV PLVALMIDQL+ LPP+I GG LSSSQ EE +ET+R ++ G IKVLFVSPERFL
Sbjct: 345 ITLVVSPLVALMIDQLKQLPPMIPGGLLSSSQSAEETSETLRQLREGTIKVLFVSPERFL 404
Query: 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
NA+FLSI +A ISLVVVDEAHCVSEWSHNFRPSYMRLRASLL A LN +CILAMTATA
Sbjct: 405 NAEFLSIVSAGPPISLVVVDEAHCVSEWSHNFRPSYMRLRASLLHAVLNAKCILAMTATA 464
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
T+ TL VM ALEIP +NLIQKAQLRDNLQLSVSLS N ++ F +S
Sbjct: 465 TSRTLHAVMHALEIPAANLIQKAQLRDNLQLSVSLSKNRMKDLMMLIKSPPFIEVQSIII 524
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y Q ETD IS+YLCDN+IS KSYHSGIPAKDRSR QELFCSNKIRVVVATVAF
Sbjct: 525 YCKFQ-----SETDSISKYLCDNNISAKSYHSGIPAKDRSRTQELFCSNKIRVVVATVAF 579
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
GMGL+K DVGAVIH+SLPESLEEYVQEIGRAGRDG LSYCHL DDITYF+LRSLM+SDG
Sbjct: 580 GMGLNKSDVGAVIHFSLPESLEEYVQEIGRAGRDGNLSYCHLLFDDITYFKLRSLMHSDG 639
Query: 543 VDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQL 602
VDEYA+N+FL QVF+NGM S GK+ S+VKE+ASRKFD+KEEVMLT+LT LELGE+QYL L
Sbjct: 640 VDEYAVNRFLSQVFSNGMGSPGKVHSIVKEAASRKFDMKEEVMLTILTHLELGEVQYLSL 699
Query: 603 LPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
LP L VTC+LNFHKTTP LLAD D +VA ILKKSETKQG YVFDIPTVANSIG TTID+
Sbjct: 700 LPPLNVTCSLNFHKTTPALLADWDIVVAAILKKSETKQGHYVFDIPTVANSIGITTIDIL 759
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
NQL NLK++GEITYE+KDPAYCYTIV+VP D C L+AHLTKWLSEVE+CKV+KLD MF+A
Sbjct: 760 NQLQNLKLKGEITYEMKDPAYCYTIVDVPGDLCCLAAHLTKWLSEVESCKVQKLDTMFNA 819
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQS 782
AV AV++CEK GC G+ HTPCLQ+ I DYF GD N D+PNK+ QSSPFLRADIKVFLQS
Sbjct: 820 AVSAVELCEKKCGCLGAQHTPCLQRKISDYFSGDGNGDIPNKMDQSSPFLRADIKVFLQS 879
Query: 783 NLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
N KFTPRAVARI+HGIASPAYPS WS+THF
Sbjct: 880 NSQVKFTPRAVARIMHGIASPAYPSATWSRTHF 912
>gi|224110762|ref|XP_002315627.1| predicted protein [Populus trichocarpa]
gi|222864667|gb|EEF01798.1| predicted protein [Populus trichocarpa]
Length = 901
Score = 1035 bits (2675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/801 (66%), Positives = 622/801 (77%), Gaps = 48/801 (5%)
Query: 58 LETLPAGFCFRLASFTKIQKPSLRFENDQSLPTP--SNPQGINEIKSDAFAKKKKQINLV 115
+ETLPAG+ + F+KIQ+PSL FE +S P S + E K + F KK NL+
Sbjct: 77 IETLPAGYFSKSTFFSKIQRPSLNFEPSESFTCPPVSADRAPPENKPNNFIKKHP--NLI 134
Query: 116 SVDVPLPPAKLRKCNGEGNFVRLNLNNNKRKFANK------------------GKRNKSF 157
+ PLPPAKLRKC+ EGNFV+LNLN+ +RKF N+ KR
Sbjct: 135 GANAPLPPAKLRKCS-EGNFVKLNLNHGRRKFVNRKGKKKSSYASSSRGFYRRSKRKSKG 193
Query: 158 RGKLSYRRTASE---------------LELVEEAVRAVRDEASDENLGRLLRLVYGYDSF 202
G + E EL++EAV V++EASDENL RLL ++YGYDSF
Sbjct: 194 EGDVEMESVCDEEGLVTEIGQQKPKKGCELIDEAVLEVQNEASDENLARLLNVMYGYDSF 253
Query: 203 RDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLP 262
R+GQLEAIKMVLD KSTMLVLPTGAGKSLCYQIPA + G+TLVV PLVALMIDQL+ LP
Sbjct: 254 REGQLEAIKMVLDGKSTMLVLPTGAGKSLCYQIPATVFSGVTLVVSPLVALMIDQLKQLP 313
Query: 263 PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVD 322
PVI GG L SSQ P+EV+ET+RL+Q G IKVLFVSPERFLNA+FLSI + ISL+VVD
Sbjct: 314 PVIQGGLLCSSQTPQEVSETLRLLQEGGIKVLFVSPERFLNAEFLSILSPIP-ISLLVVD 372
Query: 323 EAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLI 382
EAHC+SEWSHNFRPSYMRLRASLL RLN+ CILAMTATATTTTL +MSALEIP +NLI
Sbjct: 373 EAHCISEWSHNFRPSYMRLRASLLCTRLNIGCILAMTATATTTTLNAIMSALEIPSTNLI 432
Query: 383 QKAQLRDNLQLSVSLSGNNRQNERSAYVD-----EVFSFHRSSKHYYILQI---SGKHFE 434
Q A+LRDN+QLSVSLSGN RQ Y++ ++ + +S + I E
Sbjct: 433 QNAKLRDNMQLSVSLSGN-RQLTYHHYLEFNRTKDLLTLIKSPPFVELQSIIIYCKFQSE 491
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
TD+ISRYLCDN+IS KSYHS I +KDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV
Sbjct: 492 TDIISRYLCDNNISAKSYHSSITSKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 551
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQ 554
IHYS+PESLEEYVQEIGRAGRDGRLS+CHLF DD TYF+LRSLM+S+GVDEYA+NKFLC+
Sbjct: 552 IHYSMPESLEEYVQEIGRAGRDGRLSHCHLFFDDTTYFKLRSLMHSEGVDEYAVNKFLCE 611
Query: 555 VFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNF 614
+F+ M GK+ +++KES+SRKFD+KEEVMLTLLT LELGE+QY+ LLP+L VTCTLNF
Sbjct: 612 IFSTDMKHPGKIHAIIKESSSRKFDMKEEVMLTLLTQLELGEVQYIHLLPQLNVTCTLNF 671
Query: 615 HKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEI 674
+KT+P LL+DKD +V+ ILKKSETKQGQYVFDIPTVANSIG TT ++SN L NLK++GEI
Sbjct: 672 YKTSPMLLSDKDNVVSAILKKSETKQGQYVFDIPTVANSIGVTTTELSNHLQNLKLKGEI 731
Query: 675 TYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTH 734
TY++KDPAYCY+IVEVP DFC+LS HLTKWL EVE KV+KLD MF+AA+FAV+ CEK
Sbjct: 732 TYDVKDPAYCYSIVEVPRDFCSLSRHLTKWLLEVECFKVQKLDAMFNAAIFAVNDCEKMQ 791
Query: 735 GCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVA 794
GC+G+ HTPCLQ+ ILDYF+ D D+PNK+GQSS FLRADIKVFLQ N AKFTPRA+A
Sbjct: 792 GCHGTQHTPCLQRKILDYFKDDGRRDIPNKMGQSSSFLRADIKVFLQGNSQAKFTPRAIA 851
Query: 795 RILHGIASPAYPSTIWSKTHF 815
RI+HGIASPAYPS WS+THF
Sbjct: 852 RIMHGIASPAYPSATWSRTHF 872
>gi|297738361|emb|CBI27562.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/651 (74%), Positives = 546/651 (83%), Gaps = 13/651 (1%)
Query: 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLP 224
R + EL+E A V++EASDE L +LL L +GYDSFRDGQLEAI+MVL+ KSTMLVLP
Sbjct: 22 RVKFDGELIEAAALEVQNEASDEKLVKLLGLTHGYDSFRDGQLEAIRMVLEGKSTMLVLP 81
Query: 225 TGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIR 284
TGAGKSLCYQ+PA++LPG+TLVV PLVALMIDQL+ LPP+I GG LSSSQ EE +ET+R
Sbjct: 82 TGAGKSLCYQLPALVLPGITLVVSPLVALMIDQLKQLPPMIPGGLLSSSQSAEETSETLR 141
Query: 285 LIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRAS 344
++ G IKVLFVSPERFLNA+FLSI +A ISLVVVDEAHCVSEWSHNFRPSYMRLRAS
Sbjct: 142 QLREGTIKVLFVSPERFLNAEFLSIVSAGPPISLVVVDEAHCVSEWSHNFRPSYMRLRAS 201
Query: 345 LLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN 404
LL A LN +CILAMTATAT+ TL VM ALEIP +NLIQKAQLRDNLQLSVSLS NRQ+
Sbjct: 202 LLHAVLNAKCILAMTATATSRTLHAVMHALEIPAANLIQKAQLRDNLQLSVSLS-KNRQS 260
Query: 405 ERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRI 464
V + + + ETD IS+YLCDN+IS KSYHSGIPAKDRSR
Sbjct: 261 PPFIEVQSIIIYCKFQS------------ETDSISKYLCDNNISAKSYHSGIPAKDRSRT 308
Query: 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
QELFCSNKIRVVVATVAFGMGL+K DVGAVIH+SLPESLEEYVQEIGRAGRDG LSYCHL
Sbjct: 309 QELFCSNKIRVVVATVAFGMGLNKSDVGAVIHFSLPESLEEYVQEIGRAGRDGNLSYCHL 368
Query: 525 FLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEV 584
DDITYF+LRSLM+SDGVDEYA+N+FL QVF+NGM S GK+ S+VKE+ASRKFD+KEEV
Sbjct: 369 LFDDITYFKLRSLMHSDGVDEYAVNRFLSQVFSNGMGSPGKVHSIVKEAASRKFDMKEEV 428
Query: 585 MLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYV 644
MLT+LT LELGE+QYL LLP L VTC+LNFHKTTP LLAD D +VA ILKKSETKQG YV
Sbjct: 429 MLTILTHLELGEVQYLSLLPPLNVTCSLNFHKTTPALLADWDIVVAAILKKSETKQGHYV 488
Query: 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKW 704
FDIPTVANSIG TTID+ NQL NLK++GEITYE+KDPAYCYTIV+VP D C L+AHLTKW
Sbjct: 489 FDIPTVANSIGITTIDILNQLQNLKLKGEITYEMKDPAYCYTIVDVPGDLCCLAAHLTKW 548
Query: 705 LSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNK 764
LSEVE+CKV+KLD MF+AAV AV++CEK GC G+ HTPCLQ+ I DYF GD N D+PNK
Sbjct: 549 LSEVESCKVQKLDTMFNAAVSAVELCEKKCGCLGAQHTPCLQRKISDYFSGDGNGDIPNK 608
Query: 765 IGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
+ QSSPFLRADIKVFLQSN KFTPRAVARI+HGIASPAYPS WS+THF
Sbjct: 609 MDQSSPFLRADIKVFLQSNSQVKFTPRAVARIMHGIASPAYPSATWSRTHF 659
>gi|449435462|ref|XP_004135514.1| PREDICTED: ATP-dependent DNA helicase Q-like 5-like [Cucumis
sativus]
gi|449495007|ref|XP_004159708.1| PREDICTED: ATP-dependent DNA helicase Q-like 5-like [Cucumis
sativus]
Length = 952
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/876 (58%), Positives = 623/876 (71%), Gaps = 85/876 (9%)
Query: 10 SHISATPP-----RCQNPPSPPPLQTNTLSSSKSKVRIRRSFSQNPSISAFKSLETLPAG 64
S ++ PP + PSP TL +IRR+ Q+ +IS+ +S+E LPAG
Sbjct: 62 SRVTKQPPSSDVKHSEKEPSPDWTPLPTLP-----YQIRRASDQSRAISSSESMEMLPAG 116
Query: 65 FCFRLASFTKIQKPSLRFENDQSLPTPSNPQGINEIKSD----------------AFAKK 108
F + SF K ++ SL FE + T P +N +++ + +
Sbjct: 117 FFSKSPSFMKFRRSSLNFETSEDNRTLLEPIQLNNAETEIAGCSTADWGMKDDVCSLGNR 176
Query: 109 KKQI----NLVSVDVPLPPAKLRKCNGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSYR 164
K + NL+ V +PP K+RKC GEGNFV+LN+N KRKF K + K + + SYR
Sbjct: 177 VKSVRTHPNLIGTHVSVPPIKVRKCGGEGNFVKLNMNGGKRKFIKKFSKRK-YGERSSYR 235
Query: 165 ---RTASELEL-------------------------------------VEEAVRAVRDEA 184
+T + L+ +EE + VR++
Sbjct: 236 PRRKTKTNLKTEDSEEAGSFCDEDGLVTETTQHPQKQGNGGAKFDPITIEETISNVRNDP 295
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
SD+NL +LL L YGYDSF+DGQLEAIKMVL KSTM+VLPTGAGKS+CYQIPAMILPG+T
Sbjct: 296 SDDNLVKLLTLAYGYDSFQDGQLEAIKMVLAGKSTMVVLPTGAGKSICYQIPAMILPGIT 355
Query: 245 LVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
+VV PLVALMIDQL+ LPPVI GGFL SSQR EEVAET+RL+ G IKVLFVSPERF N
Sbjct: 356 VVVSPLVALMIDQLKQLPPVIQGGFLCSSQRSEEVAETVRLLIQGTIKVLFVSPERFQNT 415
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
DFLSIF+++ ++SL+VVDEAHC+SEWSHNFRPSYMRLRASLLRA LNV ILAMTATATT
Sbjct: 416 DFLSIFSSSLVVSLLVVDEAHCISEWSHNFRPSYMRLRASLLRAELNVNSILAMTATATT 475
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNE----RSAYVDEVFSFHRSS 420
+T++ +M+ALEIP NLI + +R NLQLSVS+S N ++ +S+ + EV S
Sbjct: 476 STMQAIMTALEIPSDNLILRTTVRTNLQLSVSMSTNRVKDLLRLIKSSPISEVQS----- 530
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480
I+ ETDL+SRYL DN IS KSYHSG+ AKDR RIQE FCSNKIRVVVATV
Sbjct: 531 ----IIIYCKFQLETDLVSRYLSDNGISAKSYHSGLLAKDRKRIQENFCSNKIRVVVATV 586
Query: 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYS 540
AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD+ TYF+LRSLM+S
Sbjct: 587 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDNDTYFKLRSLMHS 646
Query: 541 DGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYL 600
DGVDEY INKFL +VF+ + GK+ S+VKE ASRKFD+KEEVM+T+LT LELGE+QYL
Sbjct: 647 DGVDEYNINKFLSEVFSGNNSLCGKVYSIVKEPASRKFDMKEEVMITILTYLELGEMQYL 706
Query: 601 QLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTID 660
++LP+L VTC+LNFHKT+P +LADKD +VA ILKKSETKQGQ+VFD+ TV NSIG +
Sbjct: 707 RVLPQLNVTCSLNFHKTSPAMLADKDIVVAEILKKSETKQGQHVFDMLTVVNSIGISATS 766
Query: 661 VSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMF 720
+SN L NLK++GE+TYE+KD AYCYTI++ P DFC+LSAHL KWLSE++ K+RKLD MF
Sbjct: 767 LSNHLQNLKLKGEVTYEMKDMAYCYTILKTPEDFCSLSAHLRKWLSEIQTSKLRKLDAMF 826
Query: 721 HAAVFAVDV-CEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVF 779
A A+++ +KT C TPCL++ I YF+ D D PNK+ QSSPFLRADIKVF
Sbjct: 827 DAVTSAINLYGKKTQACCNFEQTPCLEEKICSYFQEGDTYDTPNKMSQSSPFLRADIKVF 886
Query: 780 LQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
LQSN AKFTPRAVARI+HGI SPAYPSTIWS+THF
Sbjct: 887 LQSNSQAKFTPRAVARIMHGIGSPAYPSTIWSRTHF 922
>gi|255547870|ref|XP_002514992.1| rothmund-thomson syndrome DNA helicase recq4, putative [Ricinus
communis]
gi|223546043|gb|EEF47546.1| rothmund-thomson syndrome DNA helicase recq4, putative [Ricinus
communis]
Length = 852
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/887 (58%), Positives = 610/887 (68%), Gaps = 136/887 (15%)
Query: 1 METDSDSGGSHISATPPR-----------------------------------CQNPPSP 25
ME+DS+S GSH+SATPPR + PP+
Sbjct: 1 MESDSNSDGSHVSATPPRNSKPPPLSPASPPPPPPTLVSSLKSRAKVTKSNSRSKKPPAK 60
Query: 26 PP-------LQTNTLSSSKSKVRIRRSFSQN-PSISAFKSLETLPAGFCFRLASFTKIQK 77
P + + S +I F QN SIS +ETLPAG+ + SF+K++K
Sbjct: 61 PSQPEREPETEPFSSPLSSPPFQICHRFVQNHNSIS----VETLPAGYFSKSTSFSKLKK 116
Query: 78 PSLRFENDQSLPTPSNPQGINEIKSDAFAKKKK--QINLVSVDVPLPPAKLRKCNG--EG 133
SL FE ++ P P G SD+ KKKK ++NL+ + PLPP KLRKCN EG
Sbjct: 117 TSLNFEAIENDPGPPISAG-----SDSNNKKKKLHKVNLIGANAPLPPVKLRKCNNGSEG 171
Query: 134 NFVRLNLN--NNKRKFANKGKRNKSFRGKLSYRRTASELE-------------------- 171
NFV+LN N N KRKF NK KR R S R+ +E E
Sbjct: 172 NFVKLNTNRYNYKRKFKNK-KRTTYRR---SQRKNKAEEESDLDNFFVPEIVQQKVKDGK 227
Query: 172 ---LVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAG 228
++EEAV A +DEASDENL RLL +YG+DSFR+GQLEAIKMVLD KSTMLVLPTGAG
Sbjct: 228 GSVVIEEAVLAAKDEASDENLVRLLNAIYGFDSFREGQLEAIKMVLDGKSTMLVLPTGAG 287
Query: 229 KSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQV 288
KSLCYQIPA++L G+TLVV PLVALMIDQ +HLP I GG L SSQ P+E AET+ L++
Sbjct: 288 KSLCYQIPAVVLAGITLVVSPLVALMIDQFKHLPTCIQGGLLCSSQTPQEAAETLSLVKE 347
Query: 289 GAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRA 348
GAIKVLFVSPERFLN +FLS +ATS ISL+VVDEAHC+SEWSHNFRPSYMRLRASLLR+
Sbjct: 348 GAIKVLFVSPERFLNVEFLSFISATS-ISLLVVDEAHCISEWSHNFRPSYMRLRASLLRS 406
Query: 349 RLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSA 408
L V CI+AMTATATTTTL +MSAL+IP SNL+Q +QLRDNLQLSVSL+GN ++ +
Sbjct: 407 TLKVGCIIAMTATATTTTLNVIMSALDIPSSNLVQNSQLRDNLQLSVSLTGNRMKDLVTL 466
Query: 409 YVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELF 468
F +S Y Q ETD+ISRYLCDN+IS KSYHS I +KDRSRIQELF
Sbjct: 467 IKSSPFVDVQSIIVYCKFQ-----SETDIISRYLCDNNISAKSYHSAILSKDRSRIQELF 521
Query: 469 CSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
CSNKIRVVVATVAFGMGLDK DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF DD
Sbjct: 522 CSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFFDD 581
Query: 529 ITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTL 588
TY++LRSLM+SDG+DEY ++KFLC+VFTN + GK+CS++K SASR D+KEEVMLT+
Sbjct: 582 TTYYKLRSLMHSDGIDEYTVSKFLCEVFTNC--TCGKICSIIKASASRTLDVKEEVMLTI 639
Query: 589 LTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIP 648
LT LELGE+QYL+LLPEL VTCTLNF+KT P LLADKD +V+ ILKKSET+QGQYVFDIP
Sbjct: 640 LTQLELGEVQYLRLLPELNVTCTLNFYKTAPVLLADKDIVVSAILKKSETRQGQYVFDIP 699
Query: 649 TVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEV 708
T+AN+IG T I++SN L NLK
Sbjct: 700 TIANTIGVTAIELSNHLQNLK--------------------------------------- 720
Query: 709 ENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQS 768
VR+LD MF+AAVFAV+ CEK GCN S HTPCLQ+ ILDYF+ D D+ NK+ QS
Sbjct: 721 ----VRRLDAMFNAAVFAVNECEKMQGCNDSQHTPCLQRKILDYFKEDGRNDITNKMRQS 776
Query: 769 SPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
SPFLRADIKVFLQSN AKFTPRA+ARI+ GI SPAYPS WSKTHF
Sbjct: 777 SPFLRADIKVFLQSNSQAKFTPRAIARIMQGIPSPAYPSATWSKTHF 823
>gi|110741565|dbj|BAE98731.1| putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana]
Length = 911
Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/891 (56%), Positives = 619/891 (69%), Gaps = 88/891 (9%)
Query: 1 METDSDSGGSHISATPPRCQNPPSPPPLQTN-----------TLSSSKSKVRIRRSFSQN 49
M+ DSDS GSH+SATPPR P SPP LQ+ T SSS+SK + N
Sbjct: 1 MDFDSDSDGSHVSATPPRDSFPSSPPQLQSPAKHVPPVSRKMTSSSSRSKPKAPTHPPPN 60
Query: 50 PSISA--------------------FKSLETLPAG----------FCFRLASFTKIQKPS 79
PS A F+ ++ PA C R ASFT ++K
Sbjct: 61 PSQEAPVPSPYPPPPPPSPLFTNLPFRICQSQPARFSSSVSSFSRLCSR-ASFTSVEK-- 117
Query: 80 LRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAK----LRKCNGEGNF 135
L+ + +P P + E+ + + ++K NL++ + PP K NGEGNF
Sbjct: 118 LKSDGVDFVPEPP----LVEVIAPPKSVRRKPPNLITDTITSPPVKPMVFRSNGNGEGNF 173
Query: 136 VRLNLNN-------NKRKFANKGKRNKSFRGKLSYRRTA-----------SELEL----- 172
V+LNLN +K K +K + + SFRGK ++ A S+L+
Sbjct: 174 VKLNLNGKRGKKFPSKYKGVSKSRSSYSFRGKRYKKKEADGDGESLLEEESDLQKQIEDE 233
Query: 173 -------VEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPT 225
VE+A+ AV+ EASDENL +LL LVYGYDSFRDGQL+AIKM+L STMLVLPT
Sbjct: 234 ANGFISSVEDAILAVKTEASDENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPT 293
Query: 226 GAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRL 285
GAGKSLCYQIPAMILPG+TLVV PLV+LMIDQL+HLP +I GG LSSSQRPEE ET+R
Sbjct: 294 GAGKSLCYQIPAMILPGITLVVSPLVSLMIDQLKHLPSIIKGGLLSSSQRPEEATETLRK 353
Query: 286 IQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL 345
++ G IKVLFVSPER LN +FLS+F + +SLVVVDEAHCVSEWSHNFRPSYMRL+AS+
Sbjct: 354 LKEGIIKVLFVSPERLLNVEFLSMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASM 413
Query: 346 LRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNE 405
L + L ECILAMTATATT TL+ VMS+LEIP +NLIQK+QLRDN +LSVSLSG NR +
Sbjct: 414 LFSELKAECILAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKD 473
Query: 406 RSAYVDEV-FSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRI 464
++ + RS Y Q +ETD+IS+YL DN+I+ K YHSG+PAKDR RI
Sbjct: 474 LLILMESPPYKEIRSIIVYCKFQ-----YETDMISKYLRDNNINAKGYHSGLPAKDRVRI 528
Query: 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
QELFCSNKIRVVVATVAFGMGLDK DVGAVIH+S+P S+EEYVQEIGRAGRDGRLSYCHL
Sbjct: 529 QELFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHL 588
Query: 525 FLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEV 584
F D+ TY +LRSL +SDGVDEYA+ KFL VF+ H K+CSLV ESAS+KFD+KEEV
Sbjct: 589 FYDNDTYLKLRSLAHSDGVDEYAVGKFLTHVFSTETKQHEKICSLVIESASQKFDMKEEV 648
Query: 585 MLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYV 644
M T+LT LELGE+QYL++LP+L + CTLNFHK++P LA + +VA ILKKS KQG +V
Sbjct: 649 MQTILTHLELGEVQYLRMLPQLNICCTLNFHKSSPNTLAARSAIVAAILKKSHVKQGLHV 708
Query: 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKW 704
FDIP VA+SI T DV ++ LKM+GE+TYELKD A+CYTI++ P + C+LS+HLTKW
Sbjct: 709 FDIPAVASSICVATTDVLAEIQALKMKGEVTYELKDSAFCYTILKSPKEICSLSSHLTKW 768
Query: 705 LSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNK 764
L+E+E+CKVRKLD M AAV A+ V + +G+ T LQ I DYF GD+ CD P+K
Sbjct: 769 LTEIESCKVRKLDIMSSAAVAAISVSNTSELSSGAKQTRSLQSRIFDYFNGDEKCDSPSK 828
Query: 765 IGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
Q+ FLRADIKVFLQSN AKFTPRA+ARI+HG+ SPA+P+++WSKTHF
Sbjct: 829 ATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSVWSKTHF 879
>gi|30690118|ref|NP_174109.2| ATP-dependent DNA helicase Q-like 5 [Arabidopsis thaliana]
gi|298289257|sp|Q0WVW7.2|RQL5_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 5; AltName:
Full=RecQ-like protein 5; Short=AtRecQ5; Short=AtRecQl5
gi|332192766|gb|AEE30887.1| ATP-dependent DNA helicase Q-like 5 [Arabidopsis thaliana]
Length = 911
Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/891 (56%), Positives = 618/891 (69%), Gaps = 88/891 (9%)
Query: 1 METDSDSGGSHISATPPRCQNPPSPPPLQTN-----------TLSSSKSKVRIRRSFSQN 49
M+ DSDS GSH+SATPPR P SPP LQ+ T SSS+SK + N
Sbjct: 1 MDFDSDSDGSHVSATPPRDSFPSSPPQLQSPAKHVPPVSRKMTSSSSRSKPKAPTHPPPN 60
Query: 50 PSISA--------------------FKSLETLPAG----------FCFRLASFTKIQKPS 79
PS A F+ ++ PA C R ASFT ++K
Sbjct: 61 PSQEAPVPSPYPPPPPPSPLFTNLPFRICQSQPARFSSSVSSFSRLCSR-ASFTSVEK-- 117
Query: 80 LRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAK----LRKCNGEGNF 135
L+ + +P P + E+ + + ++K NL++ + PP K NGEGNF
Sbjct: 118 LKSDGVDFVPEPP----LVEVIAPPKSVRRKPPNLITDTITSPPVKPMVFRSNGNGEGNF 173
Query: 136 VRLNLNN-------NKRKFANKGKRNKSFRGKLSYRRTA-----------SELEL----- 172
V+LNLN +K K +K + + SFRGK ++ A S+L+
Sbjct: 174 VKLNLNGKRGKKFPSKYKGVSKSRSSYSFRGKRYKKKEADGDGESLLEEESDLQKQIEDE 233
Query: 173 -------VEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPT 225
VE+A+ AV+ EASDENL +LL LVYGYDSFRDGQL+AIKM+L STMLVLPT
Sbjct: 234 ANGFISSVEDAILAVKTEASDENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPT 293
Query: 226 GAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRL 285
GAGKSLCYQIPAMILPG+TLVV PLV+LMIDQL+HLP +I GG LSSSQRPEE ET+R
Sbjct: 294 GAGKSLCYQIPAMILPGITLVVSPLVSLMIDQLKHLPSIIKGGLLSSSQRPEEATETLRK 353
Query: 286 IQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL 345
++ G IKVLFVSPER LN +FLS+F + +SLVVVDEAHCVSEWSHNFRPSYMRL+AS+
Sbjct: 354 LKEGIIKVLFVSPERLLNVEFLSMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASM 413
Query: 346 LRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNE 405
L + L ECILAMTATATT TL+ VMS+LEIP +NLIQK+QLRDN +LSVSLSG NR +
Sbjct: 414 LFSELKAECILAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKD 473
Query: 406 RSAYVDEV-FSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRI 464
++ + RS Y Q +ETD+IS+YL DN+I+ K YHSG+PAKDR RI
Sbjct: 474 LLILMESPPYKEIRSIIVYCKFQ-----YETDMISKYLRDNNINAKGYHSGLPAKDRVRI 528
Query: 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
QE FCSNKIRVVVATVAFGMGLDK DVGAVIH+S+P S+EEYVQEIGRAGRDGRLSYCHL
Sbjct: 529 QESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHL 588
Query: 525 FLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEV 584
F D+ TY +LRSL +SDGVDEYA+ KFL VF+ H K+CSLV ESAS+KFD+KEEV
Sbjct: 589 FYDNDTYLKLRSLAHSDGVDEYAVGKFLTHVFSTETKQHEKICSLVIESASQKFDMKEEV 648
Query: 585 MLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYV 644
M T+LT LELGE+QYL++LP+L + CTLNFHK++P LA + +VA ILKKS KQG +V
Sbjct: 649 MQTILTHLELGEVQYLRMLPQLNICCTLNFHKSSPNTLAARSAIVAAILKKSHVKQGLHV 708
Query: 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKW 704
FDIP VA+SI T DV ++ LKM+GE+TYELKD A+CYTI++ P + C+LS+HLTKW
Sbjct: 709 FDIPAVASSICVATTDVLAEIQALKMKGEVTYELKDSAFCYTILKSPKEICSLSSHLTKW 768
Query: 705 LSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNK 764
L+E+E+CKVRKLD M AAV A+ V + +G+ T LQ I DYF GD+ CD P+K
Sbjct: 769 LTEIESCKVRKLDIMSSAAVAAISVSNTSELSSGAKQTRSLQSRIFDYFNGDEKCDSPSK 828
Query: 765 IGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
Q+ FLRADIKVFLQSN AKFTPRA+ARI+HG+ SPA+P+++WSKTHF
Sbjct: 829 ATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSVWSKTHF 879
>gi|297845738|ref|XP_002890750.1| helicase [Arabidopsis lyrata subsp. lyrata]
gi|297336592|gb|EFH67009.1| helicase [Arabidopsis lyrata subsp. lyrata]
Length = 900
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/737 (61%), Positives = 554/737 (75%), Gaps = 36/737 (4%)
Query: 113 NLVSVDVPLPPAK----LRKCNGEGNFVRLNLNN-------NKRKFANKGKRNKSFRGKL 161
NL++ + PP K NGEGNFV+LNLN +K K +K + N +FRGK
Sbjct: 134 NLITDTITSPPVKPMVFRSSGNGEGNFVKLNLNGKRGKKFPSKYKGVSKSRSNYAFRGKR 193
Query: 162 SYRRTA-----------SELEL------------VEEAVRAVRDEASDENLGRLLRLVYG 198
++ A S+L+ VE+A+ AV+ EASDENL +LL LVYG
Sbjct: 194 YKKKEADGDGESLLEEESDLQKQVEEEANGFISSVEDAILAVKTEASDENLTKLLNLVYG 253
Query: 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQL 258
YDSFRDGQLEAIKM+L STMLVLPTGAGKSLCYQIPAMILPG+TLVV PLV+LMIDQL
Sbjct: 254 YDSFRDGQLEAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVSPLVSLMIDQL 313
Query: 259 RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318
+HLP +I GG LSSSQRPEE ET+R ++ G IKVLFVSPER LN +FLS+F + + L
Sbjct: 314 KHLPSIIKGGLLSSSQRPEETTETLRKLREGIIKVLFVSPERLLNVEFLSMFRMSLSVPL 373
Query: 319 VVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPL 378
VVVDEAHCVSEWSHNFRPSYMRL+AS+L + L +CILAMTATATT TL+ VMSALEIP
Sbjct: 374 VVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAKCILAMTATATTMTLQAVMSALEIPS 433
Query: 379 SNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLI 438
+NLIQK+QLRDN +LSVSLSG NRQ + + + H + I+ +ETD+I
Sbjct: 434 TNLIQKSQLRDNFELSVSLSGANRQLMKDLLI--LMESHPYKEIRSIIVYCKFQYETDMI 491
Query: 439 SRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYS 498
S+YL DN+I+ K YHSG+PAKDR RIQE FCSNKIRVVVATVAFGMGLDK DVGAVIH+S
Sbjct: 492 SKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFS 551
Query: 499 LPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTN 558
+P S+EEYVQEIGRAGRDGRLSYCHLF D+ TY +LRSL +SDGVDEYA+ KFL VF+
Sbjct: 552 VPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSLAHSDGVDEYAVGKFLTHVFST 611
Query: 559 GMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTT 618
H K+CSLV ESAS+KFD+KEEVM T+LT LELGE+QYL++LP+L + CTLNFHK++
Sbjct: 612 ETKQHEKICSLVIESASQKFDMKEEVMQTILTHLELGEVQYLRMLPQLNICCTLNFHKSS 671
Query: 619 PTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678
P LA ++ +VA ILKKS KQG +VFDI VA+SI T DV ++ LKM+GE+TYEL
Sbjct: 672 PNTLAARNTIVAAILKKSHVKQGLHVFDITAVASSICVATTDVLAEIQTLKMKGEVTYEL 731
Query: 679 KDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNG 738
KDPA+CYTI++ P + C+LS+HLTKWL+E+E+CKVRKLD M AAV A+ V + +G
Sbjct: 732 KDPAFCYTILKSPREICSLSSHLTKWLTEIESCKVRKLDIMSSAAVAAISVSNTSELSSG 791
Query: 739 SLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILH 798
+ T LQ I DYF GD+ CD P+K Q+ FLRADIKVFLQSN AKFTPRA+ARI+H
Sbjct: 792 AKQTLSLQSRIFDYFNGDEKCDTPSKTTQNCAFLRADIKVFLQSNRQAKFTPRAIARIMH 851
Query: 799 GIASPAYPSTIWSKTHF 815
G+ SPA+P+++WSKTHF
Sbjct: 852 GVGSPAFPNSVWSKTHF 868
>gi|17426897|emb|CAD13472.1| helicase [Arabidopsis thaliana]
Length = 870
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/786 (59%), Positives = 577/786 (73%), Gaps = 47/786 (5%)
Query: 65 FCFRLASFTKIQKPSLRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPA 124
C R ASFT ++K L+ + +P P + E+ + + ++K NL++ + PP
Sbjct: 65 LCSR-ASFTSVEK--LKSDGVDFVPEPP----LVEVIAPPKSVRRKPPNLITDTITSPPV 117
Query: 125 K----LRKCNGEGNFVRLNLNN-------NKRKFANKGKRNKSFRGKLSYRRTA------ 167
K NGEGNFV+LNLN +K K +K + + SFRGK ++ A
Sbjct: 118 KPMVFRSNGNGEGNFVKLNLNGKRGKKFPSKYKGVSKSRSSYSFRGKRYKKKEADGDGES 177
Query: 168 -----SELEL------------VEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAI 210
S+L+ VE+A+ AV+ EASDENL +LL LVYGYDSFRDGQL+AI
Sbjct: 178 LLEEESDLQKQIEDEANGFISSVEDAILAVKTEASDENLTKLLNLVYGYDSFRDGQLQAI 237
Query: 211 KMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFL 270
KM+L STMLVLPTGAGKSLCYQIPAMILPG+TLVV PLV+LMIDQL+HLP +I GG L
Sbjct: 238 KMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVSPLVSLMIDQLKHLPSIIKGGLL 297
Query: 271 SSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEW 330
SSSQRPEE ET+R ++ G IKVLFVSPER LN +FLS+F + +SLVVVDEAHCVSEW
Sbjct: 298 SSSQRPEEATETLRKLKEGIIKVLFVSPERLLNVEFLSMFRMSLSVSLVVVDEAHCVSEW 357
Query: 331 SHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDN 390
SHNFRPSYMRL+AS+L + L ECILAMTATATT TL+ VMS+LEIP +NLIQK+QLRDN
Sbjct: 358 SHNFRPSYMRLKASMLFSELKAECILAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDN 417
Query: 391 LQLSVSLSGNNRQNERSAYVDEV-FSFHRSSKHYYILQISGKHFETDLISRYLCDNSISV 449
+LSVSLSG NR + ++ + RS Y Q +ETD+IS+YL DN+I+
Sbjct: 418 FELSVSLSGANRMKDLLILMESPPYKEIRSIIVYCKFQ-----YETDMISKYLRDNNINA 472
Query: 450 KSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQE 509
K YHSG+PAKDR RIQE FCSNKIRVVVATVAFGMGLDK DVGAVIH+S+P S+EEYVQE
Sbjct: 473 KGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQE 532
Query: 510 IGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSL 569
IGRAGRDGRLSYCHLF D+ TY +LRSL +SDGVDEYA+ KFL VF+ H K+CSL
Sbjct: 533 IGRAGRDGRLSYCHLFYDNDTYLKLRSLAHSDGVDEYAVGKFLTHVFSTETKQHEKICSL 592
Query: 570 VKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMV 629
V ESAS+KFD+KEEVM T+LT LELGE+QYL++LP+L + CTLNFHK++P LA + +V
Sbjct: 593 VIESASQKFDMKEEVMQTILTHLELGEVQYLRMLPQLNICCTLNFHKSSPNTLAARSAIV 652
Query: 630 ATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVE 689
A ILKKS KQG +VFDIP VA+SI T DV ++ LKM+GE+TYELKD A+CYTI++
Sbjct: 653 AAILKKSHVKQGLHVFDIPAVASSICVATTDVLAEIQALKMKGEVTYELKDSAFCYTILK 712
Query: 690 VPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNI 749
P + C+LS+HLTKWL+E+E+CKVRKLD M AAV A+ V + +G+ T LQ I
Sbjct: 713 SPKEICSLSSHLTKWLTEIESCKVRKLDIMSSAAVAAISVSNTSELSSGAKQTRSLQSRI 772
Query: 750 LDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTI 809
DYF GD+ CD P+K Q+ FLRADIKVFLQSN AKFTPRA+ARI+HG+ SPA+P+++
Sbjct: 773 FDYFNGDEKCDSPSKATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSV 832
Query: 810 WSKTHF 815
WSKTHF
Sbjct: 833 WSKTHF 838
>gi|12320889|gb|AAG50580.1|AC079280_11 ATP-dependent DNA helicase RecQ, putative [Arabidopsis thaliana]
Length = 941
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/923 (54%), Positives = 616/923 (66%), Gaps = 122/923 (13%)
Query: 1 METDSDSGGSHISATPPRCQNPPSPPPLQTN-----------TLSSSKSKVRIRRSFSQN 49
M+ DSDS GSH+SATPPR P SPP LQ+ T SSS+SK + N
Sbjct: 1 MDFDSDSDGSHVSATPPRDSFPSSPPQLQSPAKHVPPVSRKMTSSSSRSKPKAPTHPPPN 60
Query: 50 PSISA--------------------FKSLETLPAG----------FCFRLASFTKIQKPS 79
PS A F+ ++ PA C R ASFT ++K
Sbjct: 61 PSQEAPVPSPYPPPPPPSPLFTNLPFRICQSQPARFSSSVSSFSRLCSR-ASFTSVEK-- 117
Query: 80 LRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAK----LRKCNGEGNF 135
L+ + +P P + E+ + + ++K NL++ + PP K NGEGNF
Sbjct: 118 LKSDGVDFVPEPP----LVEVIAPPKSVRRKPPNLITDTITSPPVKPMVFRSNGNGEGNF 173
Query: 136 VRLNLNN-------NKRKFANKGKRNKSFRGKLSYRRTA-----------SELEL----- 172
V+LNLN +K K +K + + SFRGK ++ A S+L+
Sbjct: 174 VKLNLNGKRGKKFPSKYKGVSKSRSSYSFRGKRYKKKEADGDGESLLEEESDLQKQIEDE 233
Query: 173 -------VEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPT 225
VE+A+ AV+ EASDENL +LL LVYGYDSFRDGQL+AIKM+L STMLVLPT
Sbjct: 234 ANGFISSVEDAILAVKTEASDENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPT 293
Query: 226 GAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRL 285
GAGKSLCYQIPAMILPG+TLVV PLV+LMIDQL+HLP +I GG LSSSQRPEE ET+R
Sbjct: 294 GAGKSLCYQIPAMILPGITLVVSPLVSLMIDQLKHLPSIIKGGLLSSSQRPEEATETLRK 353
Query: 286 IQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSE-----------W---- 330
++ G IKVLFVSPER LN +FLS+F + +SLVVVDEAHCVSE W
Sbjct: 354 LKEGIIKVLFVSPERLLNVEFLSMFRMSLSVSLVVVDEAHCVSECIYCLSLFCLSWLLRA 413
Query: 331 ----SHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQ 386
SHNFRPSYMRL+AS+L + L ECILAMTATATT TL+ VMS+LEIP +NLIQK+Q
Sbjct: 414 ILNRSHNFRPSYMRLKASMLFSELKAECILAMTATATTMTLQAVMSSLEIPSTNLIQKSQ 473
Query: 387 LRDNLQLSVSLSGNNRQNERSAYVDEV-FSFHRSSKHYYILQISGKHFETDLISRYLCDN 445
LRDN +LSVSLSG NR + ++ + RS Y Q +ETD+IS+YL DN
Sbjct: 474 LRDNFELSVSLSGANRMKDLLILMESPPYKEIRSIIVYCKFQ-----YETDMISKYLRDN 528
Query: 446 SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEE 505
+I+ K YHSG+PAKDR RIQE FCSNKIRVVVATVAFGMGLDK DVGAVIH+S+P S+EE
Sbjct: 529 NINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEE 588
Query: 506 YVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGK 565
YVQEIGRAGRDGRLSYCHLF D+ TY +LRSL +SDGVDEYA+ KFL VF+ H K
Sbjct: 589 YVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSLAHSDGVDEYAVGKFLTHVFSTETKQHEK 648
Query: 566 LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKT-------- 617
+CSLV ESAS+KFD+KEEVM T+LT LELGE+QYL++LP+L + CTLNFHKT
Sbjct: 649 ICSLVIESASQKFDMKEEVMQTILTHLELGEVQYLRMLPQLNICCTLNFHKTSDAQNIVM 708
Query: 618 -----TPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRG 672
+P LA + +VA ILKKS KQG +VFDIP VA+SI T DV ++ LK G
Sbjct: 709 LYVQSSPNTLAARSAIVAAILKKSHVKQGLHVFDIPAVASSICVATTDVLAEIQALK--G 766
Query: 673 EITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEK 732
E+TYELKD A+CYTI++ P + C+LS+HLTKWL+E+E+CKVRKLD M AAV A+ V
Sbjct: 767 EVTYELKDSAFCYTILKSPKEICSLSSHLTKWLTEIESCKVRKLDIMSSAAVAAISVSNT 826
Query: 733 THGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRA 792
+ +G+ T LQ I DYF GD+ CD P+K Q+ FLRADIKVFLQSN AKFTPRA
Sbjct: 827 SELSSGAKQTRSLQSRIFDYFNGDEKCDSPSKATQNCAFLRADIKVFLQSNRQAKFTPRA 886
Query: 793 VARILHGIASPAYPSTIWSKTHF 815
+ARI+HG+ SPA+P+++WSKTHF
Sbjct: 887 IARIMHGVGSPAFPNSVWSKTHF 909
>gi|25403040|pir||A86404 probable protein ATP-dependent DNA helicase RecQ [imported] -
Arabidopsis thaliana
Length = 941
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/923 (54%), Positives = 616/923 (66%), Gaps = 122/923 (13%)
Query: 1 METDSDSGGSHISATPPRCQNPPSPPPLQTN-----------TLSSSKSKVRIRRSFSQN 49
M+ DS+S GSH+SATPPR P SPP LQ+ T SSS+SK + N
Sbjct: 1 MDFDSESDGSHVSATPPRDSFPSSPPQLQSPAKHVPPVSRKMTSSSSRSKPKAPTHPPPN 60
Query: 50 PSISA--------------------FKSLETLPAG----------FCFRLASFTKIQKPS 79
PS A F+ ++ PA C R ASFT ++K
Sbjct: 61 PSQEAPVPSPYPPPPPPSPLFTNLPFRICQSQPARFSSSVSSFSRLCSR-ASFTSVEK-- 117
Query: 80 LRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAK----LRKCNGEGNF 135
L+ + +P P + E+ + + ++K NL++ + PP K NGEGNF
Sbjct: 118 LKSDGVDFVPEPP----LVEVIAPPKSVRRKPPNLITDTITSPPVKPMVFRSNGNGEGNF 173
Query: 136 VRLNLNN-------NKRKFANKGKRNKSFRGKLSYRRTA-----------SELEL----- 172
V+LNLN +K K +K + + SFRGK ++ A S+L+
Sbjct: 174 VKLNLNGKRGKKFPSKYKGVSKSRSSYSFRGKRYKKKEADGDGESLLEEESDLQKQIEDE 233
Query: 173 -------VEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPT 225
VE+A+ AV+ EASDENL +LL LVYGYDSFRDGQL+AIKM+L STMLVLPT
Sbjct: 234 ANGFISSVEDAILAVKTEASDENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPT 293
Query: 226 GAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRL 285
GAGKSLCYQIPAMILPG+TLVV PLV+LMIDQL+HLP +I GG LSSSQRPEE ET+R
Sbjct: 294 GAGKSLCYQIPAMILPGITLVVSPLVSLMIDQLKHLPSIIKGGLLSSSQRPEEATETLRK 353
Query: 286 IQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSE-----------W---- 330
++ G IKVLFVSPER LN +FLS+F + +SLVVVDEAHCVSE W
Sbjct: 354 LKEGIIKVLFVSPERLLNVEFLSMFRMSLSVSLVVVDEAHCVSECIYCLSLFCLSWLLRA 413
Query: 331 ----SHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQ 386
SHNFRPSYMRL+AS+L + L ECILAMTATATT TL+ VMS+LEIP +NLIQK+Q
Sbjct: 414 ILNRSHNFRPSYMRLKASMLFSELKAECILAMTATATTMTLQAVMSSLEIPSTNLIQKSQ 473
Query: 387 LRDNLQLSVSLSGNNRQNERSAYVDEV-FSFHRSSKHYYILQISGKHFETDLISRYLCDN 445
LRDN +LSVSLSG NR + ++ + RS Y Q +ETD+IS+YL DN
Sbjct: 474 LRDNFELSVSLSGANRMKDLLILMESPPYKEIRSIIVYCKFQ-----YETDMISKYLRDN 528
Query: 446 SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEE 505
+I+ K YHSG+PAKDR RIQE FCSNKIRVVVATVAFGMGLDK DVGAVIH+S+P S+EE
Sbjct: 529 NINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEE 588
Query: 506 YVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGK 565
YVQEIGRAGRDGRLSYCHLF D+ TY +LRSL +SDGVDEYA+ KFL VF+ H K
Sbjct: 589 YVQEIGRAGRDGRLSYCHLFYDNDTYLKLRSLAHSDGVDEYAVGKFLTHVFSTETKQHEK 648
Query: 566 LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKT-------- 617
+CSLV ESAS+KFD+KEEVM T+LT LELGE+QYL++LP+L + CTLNFHKT
Sbjct: 649 ICSLVIESASQKFDMKEEVMQTILTHLELGEVQYLRMLPQLNICCTLNFHKTSDAQNIVM 708
Query: 618 -----TPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRG 672
+P LA + +VA ILKKS KQG +VFDIP VA+SI T DV ++ LK G
Sbjct: 709 LYVQSSPNTLAARSAIVAAILKKSHVKQGLHVFDIPAVASSICVATTDVLAEIQALK--G 766
Query: 673 EITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEK 732
E+TYELKD A+CYTI++ P + C+LS+HLTKWL+E+E+CKVRKLD M AAV A+ V
Sbjct: 767 EVTYELKDSAFCYTILKSPKEICSLSSHLTKWLTEIESCKVRKLDIMSSAAVAAISVSNT 826
Query: 733 THGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRA 792
+ +G+ T LQ I DYF GD+ CD P+K Q+ FLRADIKVFLQSN AKFTPRA
Sbjct: 827 SELSSGAKQTRSLQSRIFDYFNGDEKCDSPSKATQNCAFLRADIKVFLQSNRQAKFTPRA 886
Query: 793 VARILHGIASPAYPSTIWSKTHF 815
+ARI+HG+ SPA+P+++WSKTHF
Sbjct: 887 IARIMHGVGSPAFPNSVWSKTHF 909
>gi|356528251|ref|XP_003532718.1| PREDICTED: ATP-dependent DNA helicase Q-like 5-like [Glycine max]
Length = 861
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/884 (56%), Positives = 595/884 (67%), Gaps = 121/884 (13%)
Query: 1 METDSDSGGSHISAT--------------------------PPRCQNPPSPP-------- 26
ME+DSDS GSHISAT P + + P P
Sbjct: 1 MESDSDSDGSHISATPPRKSTPSPPPPPPVVVSKKSRIRIKPSKSKPKPDPSGSSKTQSK 60
Query: 27 --PLQTNTLSSSKSKV--RIRRSFSQNPSISAFKSLETLPAGFCFRLASFT--KIQKPSL 80
P+Q TL S + + +IRR S PSIS S+ETLPAG+ S + KI++P L
Sbjct: 61 SDPIQQATLLSLPTDLPFQIRRP-SDAPSISY--SIETLPAGYFSSSHSASFSKIRRPLL 117
Query: 81 RFENDQSLPTPSNPQGINEIKS---DAFAKKKKQI-NLVSVDVPLPPAKLRKCN-GEGNF 135
E + + P G ++ ++ D + K Q+ NL+ P+P K R GEGNF
Sbjct: 118 NLEPSE-VEQPVFTSGASDSRAEGADLRKRGKSQLPNLIGSSAPMPSVKPRTSGAGEGNF 176
Query: 136 VRLNLNNNKRKFANK-----GKRNKSFR---------------GKLSYRRTASELEL--- 172
V+LN+N ++KF NK GKR KS+R G+L R E+
Sbjct: 177 VKLNMNGKRKKFLNKRGKFGGKRYKSWRFKSQREKEEEQEEAVGELKQRGGCKRREIDGD 236
Query: 173 -VEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSL 231
VEEA A R E S+ENL +LLRLV+GYD FRDGQ+EAIKMVL KS+++VLPTGAGKSL
Sbjct: 237 AVEEAATAARKEPSEENLVKLLRLVHGYDCFRDGQVEAIKMVLAGKSSVVVLPTGAGKSL 296
Query: 232 CYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAI 291
CYQ+PA+ILPG+TLVV PLVALMIDQLR LP VI GG LSS+Q PEE +E+++ ++ G I
Sbjct: 297 CYQLPAVILPGVTLVVSPLVALMIDQLRQLPHVIMGGLLSSTQTPEEASESLKQLRQGGI 356
Query: 292 KVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLN 351
KVLFVSPERFLN +FLS ++ ISLVV+DEAHC+SEWSHNFRPS+MRLRASLL LN
Sbjct: 357 KVLFVSPERFLNEEFLSTISSLPAISLVVIDEAHCISEWSHNFRPSFMRLRASLLHKTLN 416
Query: 352 VECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVD 411
V +LAMTATATTTTL +MSAL+IP +NLIQKAQLRDN LSVSL N ++ +
Sbjct: 417 VRSVLAMTATATTTTLDAIMSALDIPSTNLIQKAQLRDNFHLSVSLVRNRMKDLLNLIKS 476
Query: 412 EVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
F +S Y Q +ETD I+RYL DN+I KSYHSGI AK+RS +QELF SN
Sbjct: 477 PPFVEVQSMIIYCKFQ-----YETDQINRYLNDNNILAKSYHSGISAKERSYVQELFNSN 531
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531
KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF DD TY
Sbjct: 532 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETY 591
Query: 532 FRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTC 591
F+LRSL +S+GVDEYA+NKFL +VF NS GK+CSL+KESASR+FD+KEEVMLTLLT
Sbjct: 592 FKLRSLTHSEGVDEYAVNKFLREVFPADKNSCGKICSLIKESASRRFDMKEEVMLTLLTR 651
Query: 592 LELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVA 651
LELG++QYLQL P++ VT TLNFHK+ P LLA K +A ILK+SETK GQY+FDIPTVA
Sbjct: 652 LELGDVQYLQLHPQINVTGTLNFHKSPPPLLAQKVSAIAVILKRSETKHGQYIFDIPTVA 711
Query: 652 NSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENC 711
N +G T +++ NQL +LK
Sbjct: 712 NDMGVTAVELINQLYDLK------------------------------------------ 729
Query: 712 KVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPF 771
VRK+D MF+AA FA+++C+ GC+G+ HTPCLQ+ ILDYF G DN D KIGQSSPF
Sbjct: 730 -VRKMDAMFNAAYFALNLCDTMQGCSGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPF 788
Query: 772 LRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
LRADIKVFLQSN A+FTPRAVAR++HGIASPAYPST WSKTHF
Sbjct: 789 LRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTAWSKTHF 832
>gi|218195087|gb|EEC77514.1| hypothetical protein OsI_16386 [Oryza sativa Indica Group]
gi|222629089|gb|EEE61221.1| hypothetical protein OsJ_15254 [Oryza sativa Japonica Group]
Length = 926
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/721 (59%), Positives = 528/721 (73%), Gaps = 36/721 (4%)
Query: 125 KLRKCNGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSYRRTAS-----------ELELV 173
K + EGNFVRLN+N R+ K + K S+RR + E +LV
Sbjct: 182 KRARGGSEGNFVRLNINGYGRRRTFKNSQAKRSTKCRSWRRQRAAGATPRSQGDEEGDLV 241
Query: 174 EEA----------------VRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKK 217
EA V +VR++ S++NL LL YG+DSFR GQLEAI+ ++ +
Sbjct: 242 AEALLEREKQAASDSVLEAVESVREDPSEQNLKSLLNAAYGHDSFRQGQLEAIQQIVAGE 301
Query: 218 STMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPE 277
STMLVLPTGAGKSLCYQ+PAMILPGLTLVV PL++LM+DQLR LP + GG L+SSQ +
Sbjct: 302 STMLVLPTGAGKSLCYQVPAMILPGLTLVVSPLLSLMVDQLRKLPAFLPGGLLASSQTSD 361
Query: 278 EVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPS 337
E +T++ ++ G IKVLFVSPERFLN +FL IF T ISLV +DEAHC+SEWSHNFRPS
Sbjct: 362 EFHDTLQRLRAGEIKVLFVSPERFLNEEFLLIFRDTLPISLVAIDEAHCISEWSHNFRPS 421
Query: 338 YMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSL 397
Y+RLRASLLR +LNV+CILAMTATATT TL ++M+ALEIP NLIQ +Q+R+NLQLS+S
Sbjct: 422 YLRLRASLLRRKLNVQCILAMTATATTQTLEEIMNALEIPSDNLIQTSQIRENLQLSIST 481
Query: 398 SGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIP 457
S N ++ F RS Y Q ETD +S+YLCDN+I+ KSYHSG+
Sbjct: 482 SDNRLKDLMLLLKSPPFVDMRSIIVYCKFQA-----ETDFVSKYLCDNNITAKSYHSGLL 536
Query: 458 AKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
K+RSR+QELFCSNKIRVVVATVAFGMGLDK DV VIHYSLPESLEEY+QE GRAGRDG
Sbjct: 537 IKNRSRVQELFCSNKIRVVVATVAFGMGLDKSDVEGVIHYSLPESLEEYIQETGRAGRDG 596
Query: 518 RLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRK 577
RLS+CHL LD T++++RSL +SDGVD YA++KFL Q+F++ N+ G +CSL KE SRK
Sbjct: 597 RLSHCHLLLDSATFYKIRSLSHSDGVDGYAMSKFLYQIFSS-ENTTGCICSLAKELTSRK 655
Query: 578 FDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSE 637
FDIKEEV+LT+LT LE+G+ QY++LLP+ VTCTL FHKT+P LLADKD ++ ++L +SE
Sbjct: 656 FDIKEEVLLTILTQLEIGDQQYIRLLPQFSVTCTLYFHKTSPQLLADKDILIRSVLNRSE 715
Query: 638 TKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCAL 697
K G YVFDIP +AN + T +V + L LK GEI++ELKDPAYCY I+ P DF AL
Sbjct: 716 MKDGHYVFDIPRIANDLKITMNEVFDHLHKLKFSGEISFELKDPAYCYVILWRPDDFNAL 775
Query: 698 SAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD 757
SA+LTKWLSEVE+ K+ KLD MF A FAV C++T GC+GS HTPC+QK I++YF DD
Sbjct: 776 SANLTKWLSEVESSKISKLDAMFALANFAVKGCKRTGGCSGSQHTPCIQKKIMEYFSKDD 835
Query: 758 NC---DVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTH 814
D ++ +SSPFL+ADIKVF+QSN AKFTPRAVARI+HGI+SPA+PS WSK H
Sbjct: 836 GTSENDCRTQLQKSSPFLQADIKVFIQSNSFAKFTPRAVARIMHGISSPAFPSVTWSKNH 895
Query: 815 F 815
F
Sbjct: 896 F 896
>gi|90265257|emb|CAD79702.2| H0302E05.5 [Oryza sativa Indica Group]
Length = 925
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/721 (58%), Positives = 527/721 (73%), Gaps = 36/721 (4%)
Query: 125 KLRKCNGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSYRRTAS-----------ELELV 173
K + EGNFVRLN+N R+ K + K S+RR + E +LV
Sbjct: 181 KRARGGSEGNFVRLNINGYGRRRTFKNSQAKRSTKCRSWRRQRAAGATPRSQGDEEGDLV 240
Query: 174 EEA----------------VRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKK 217
EA V +VR++ S++NL LL YG+DSFR GQLEAI+ ++ +
Sbjct: 241 AEALLEREKQAASDSVLEAVESVREDPSEQNLKSLLNAAYGHDSFRQGQLEAIQQIVAGE 300
Query: 218 STMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPE 277
STMLVLPTGAGKSLCYQ+PAMILPGLTLVV PL++LM+DQLR LP + GG L+SSQ +
Sbjct: 301 STMLVLPTGAGKSLCYQVPAMILPGLTLVVSPLLSLMVDQLRKLPAFLPGGLLASSQTSD 360
Query: 278 EVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPS 337
E +T++ ++ G IKVLFVSPERFLN +FL IF T ISLV +DEAHC+SEWSHNFRPS
Sbjct: 361 EFHDTLQRLRAGEIKVLFVSPERFLNEEFLLIFRDTLPISLVAIDEAHCISEWSHNFRPS 420
Query: 338 YMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSL 397
Y+RLRASLLR +LNV+CILAMTATATT TL ++M+ALEIP NLIQ +Q+R+NLQLS+S
Sbjct: 421 YLRLRASLLRRKLNVQCILAMTATATTQTLEEIMNALEIPSDNLIQTSQIRENLQLSIST 480
Query: 398 SGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIP 457
S N ++ F RS Y Q ETD +S+YLCDN+I+ KSYHSG+
Sbjct: 481 SDNRLKDLMLLLKSPPFVDMRSIIVYCKFQA-----ETDFVSKYLCDNNITAKSYHSGLL 535
Query: 458 AKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
K+RSR+QELFCSNKIRVVVATVAFGMGLDK DV VIHYSLPESLEEY+QE GRAGRDG
Sbjct: 536 IKNRSRVQELFCSNKIRVVVATVAFGMGLDKSDVEGVIHYSLPESLEEYIQETGRAGRDG 595
Query: 518 RLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRK 577
RLS+CHL LD T++++RSL +SDGVD YA++KFL Q+F++ N+ G + SL KE SRK
Sbjct: 596 RLSHCHLLLDSATFYKIRSLSHSDGVDGYAMSKFLYQIFSS-ENTTGCIGSLAKELTSRK 654
Query: 578 FDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSE 637
FDIKEEV+LT+LT LE+G+ QY++LLP+ VTCTL FHKT+P LLADKD ++ ++L +SE
Sbjct: 655 FDIKEEVLLTILTQLEIGDQQYIRLLPQFSVTCTLYFHKTSPQLLADKDILIRSVLNRSE 714
Query: 638 TKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCAL 697
K G YVFDIP +AN + T +V + L LK GEI++ELKDPAYCY I+ P DF AL
Sbjct: 715 MKDGHYVFDIPRIANDLKITMNEVFDHLHKLKFSGEISFELKDPAYCYVILWRPDDFNAL 774
Query: 698 SAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD 757
SA+LTKWLSEVE+ K+ KLD MF A FAV C++T GC+GS HTPC+QK I++YF DD
Sbjct: 775 SANLTKWLSEVESSKISKLDAMFALANFAVKGCKRTGGCSGSQHTPCIQKKIMEYFSKDD 834
Query: 758 NC---DVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTH 814
D ++ +SSPFL+ADIKVF+QSN AKFTPRAVARI+HGI+SPA+PS WSK H
Sbjct: 835 GTSENDCRTQLQKSSPFLQADIKVFIQSNSFAKFTPRAVARIMHGISSPAFPSVTWSKNH 894
Query: 815 F 815
F
Sbjct: 895 F 895
>gi|38344226|emb|CAD41320.2| OJ991113_30.2 [Oryza sativa Japonica Group]
Length = 927
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/722 (59%), Positives = 528/722 (73%), Gaps = 37/722 (5%)
Query: 125 KLRKCNGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSYRRTAS-----------ELELV 173
K + EGNFVRLN+N R+ K + K S+RR + E +LV
Sbjct: 182 KRARGGSEGNFVRLNINGYGRRRTFKNSQAKRSTKCRSWRRQRAAGATPRSQGDEEGDLV 241
Query: 174 EEA----------------VRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKK 217
EA V +VR++ S++NL LL YG+DSFR GQLEAI+ ++ +
Sbjct: 242 AEALLEREKQAASDSVLEAVESVREDPSEQNLKSLLNAAYGHDSFRQGQLEAIQQIVAGE 301
Query: 218 STMLVLPTGAGKSLCYQ-IPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRP 276
STMLVLPTGAGKSLCYQ +PAMILPGLTLVV PL++LM+DQLR LP + GG L+SSQ
Sbjct: 302 STMLVLPTGAGKSLCYQQVPAMILPGLTLVVSPLLSLMVDQLRKLPAFLPGGLLASSQTS 361
Query: 277 EEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRP 336
+E +T++ ++ G IKVLFVSPERFLN +FL IF T ISLV +DEAHC+SEWSHNFRP
Sbjct: 362 DEFHDTLQRLRAGEIKVLFVSPERFLNEEFLLIFRDTLPISLVAIDEAHCISEWSHNFRP 421
Query: 337 SYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVS 396
SY+RLRASLLR +LNV+CILAMTATATT TL ++M+ALEIP NLIQ +Q+R+NLQLS+S
Sbjct: 422 SYLRLRASLLRRKLNVQCILAMTATATTQTLEEIMNALEIPSDNLIQTSQIRENLQLSIS 481
Query: 397 LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGI 456
S N ++ F RS Y Q ETD +S+YLCDN+I+ KSYHSG+
Sbjct: 482 TSDNRLKDLMLLLKSPPFVDMRSIIVYCKFQA-----ETDFVSKYLCDNNITAKSYHSGL 536
Query: 457 PAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD 516
K+RSR+QELFCSNKIRVVVATVAFGMGLDK DV VIHYSLPESLEEY+QE GRAGRD
Sbjct: 537 LIKNRSRVQELFCSNKIRVVVATVAFGMGLDKSDVEGVIHYSLPESLEEYIQETGRAGRD 596
Query: 517 GRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASR 576
GRLS+CHL LD T++++RSL +SDGVD YA++KFL Q+F++ N+ G +CSL KE SR
Sbjct: 597 GRLSHCHLLLDSATFYKIRSLSHSDGVDGYAMSKFLYQIFSS-ENTTGCICSLAKELTSR 655
Query: 577 KFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKS 636
KFDIKEEV+LT+LT LE+G+ QY++LLP+ VTCTL FHKT+P LLADKD ++ ++L +S
Sbjct: 656 KFDIKEEVLLTILTQLEIGDQQYIRLLPQFSVTCTLYFHKTSPQLLADKDILIRSVLNRS 715
Query: 637 ETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCA 696
E K G YVFDIP +AN + T +V + L LK GEI++ELKDPAYCY I+ P DF A
Sbjct: 716 EMKDGHYVFDIPRIANDLKITMNEVFDHLHKLKFSGEISFELKDPAYCYVILWRPDDFNA 775
Query: 697 LSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGD 756
LSA+LTKWLSEVE+ K+ KLD MF A FAV C++T GC+GS HTPC+QK I++YF D
Sbjct: 776 LSANLTKWLSEVESSKISKLDAMFALANFAVKGCKRTGGCSGSQHTPCIQKKIMEYFSKD 835
Query: 757 DNC---DVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKT 813
D D ++ +SSPFL+ADIKVF+QSN AKFTPRAVARI+HGI+SPA+PS WSK
Sbjct: 836 DGTSENDCRTQLQKSSPFLQADIKVFIQSNSFAKFTPRAVARIMHGISSPAFPSVTWSKN 895
Query: 814 HF 815
HF
Sbjct: 896 HF 897
>gi|413918720|gb|AFW58652.1| hypothetical protein ZEAMMB73_617936 [Zea mays]
Length = 1256
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/811 (52%), Positives = 534/811 (65%), Gaps = 68/811 (8%)
Query: 19 CQNPPSPPPLQTNTLSSSKSKVRIRRSFSQNPSISAFKSLETLPAGFCFRLASFTKIQKP 78
C SPPPL + LS V S+ + A + + + FR + + P
Sbjct: 430 CTAAVSPPPLPSAALSDPHGLV------SRIAAAPALVTATSTVSSSSFR--RLVQSRNP 481
Query: 79 SLRFENDQSLPTPSNPQGINEIKSDAFAK----------KKKQINLVSVDVPLPPA---- 124
S S PTP+ EI + A A+ + K+++ SV +PPA
Sbjct: 482 SFDPAAAFSAPTPAPTLAPTEIATAATAQCPAPDAPPQTRPKRVHPNSVSEVVPPAAEAE 541
Query: 125 --KLRKCNGEGNFVRLNLN--NNKRKFANKGKRN----KSFR-----GKLSYRRTASELE 171
K + EGNFVRLN+N +R F N R +S+R G R E +
Sbjct: 542 QPKRPRGGAEGNFVRLNINGYGRRRTFRNAQARRPTKYRSWRRQRHGGAKPQGRGDEEGD 601
Query: 172 LVE------------------EAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMV 213
V EAV A R++ S++NL LLR++YGY+SFR+GQLEAI+ V
Sbjct: 602 FVAEAMIEREKKRAGGDGGVLEAVEAAREDPSEQNLENLLRIIYGYNSFREGQLEAIQKV 661
Query: 214 LDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSS 273
+ +STMLVLPTGAGKSLCYQ+PAMILPGLTLVV PL++LM+DQL LP + GGFL+S+
Sbjct: 662 VAGESTMLVLPTGAGKSLCYQVPAMILPGLTLVVSPLLSLMVDQLMKLPAFLPGGFLASN 721
Query: 274 QRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHN 333
Q +E ET++ ++ G IKVLFVSPERFLN +FL IF ISLV +DEAHC+SEWSHN
Sbjct: 722 QTSDEFHETLQRLRGGEIKVLFVSPERFLNEEFLLIFRDGLQISLVAIDEAHCISEWSHN 781
Query: 334 FRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQL 393
FRPSY+RLRASLLR +LNV+ ILAMTATATT TL ++++ LEIP NLI+ +Q+RDNLQL
Sbjct: 782 FRPSYLRLRASLLRRKLNVQSILAMTATATTQTLEEIVTVLEIPSDNLIKTSQIRDNLQL 841
Query: 394 SVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYH 453
+S+S N ++ F +S Y Q ETD +S+YLCDN+I+ KSYH
Sbjct: 842 FISMSNNRLKDLLLLLKASPFVDMKSIIVYCKFQ-----GETDYVSKYLCDNNITAKSYH 896
Query: 454 SGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRA 513
SG+ K+R+R+QELFCSNKIRVVVATVAFGMGLDK DV VIHYSLPESLEEY+QE GRA
Sbjct: 897 SGLLMKNRNRVQELFCSNKIRVVVATVAFGMGLDKSDVEGVIHYSLPESLEEYIQETGRA 956
Query: 514 GRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKES 573
GRDGRLSYCHLFLD T+++ RSL++SDGVDEYA++KFL QVF+ NS G +CSLVKES
Sbjct: 957 GRDGRLSYCHLFLDSTTFYKSRSLLHSDGVDEYAMSKFLFQVFSC-ENSVGCICSLVKES 1015
Query: 574 ASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATIL 633
SRKFDIKEEV+ T+LT LE+G QYL+LLP+ VTCTL FHKT+P LLADKD +V ++L
Sbjct: 1016 TSRKFDIKEEVLFTVLTQLEIGGQQYLRLLPQFSVTCTLYFHKTSPQLLADKDVLVRSVL 1075
Query: 634 KKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSD 693
KSETK G +VFD+ VAN + T +V + L LK GEI++ELKDPA Y I++ P D
Sbjct: 1076 DKSETKGGHFVFDMTKVANDLSITVNEVFDHLQQLKFSGEISFELKDPACIYVILKKPDD 1135
Query: 694 FCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYF 753
ALSA +T+WLSEVEN K+ KLD MF A FAV C++T GC+GS HTPC+QK I+ YF
Sbjct: 1136 LNALSADITRWLSEVENSKISKLDAMFDLANFAVKGCQRTDGCSGSQHTPCIQKKIIQYF 1195
Query: 754 RGD------DNCDVPNKIGQSSPFLRADIKV 778
+ C P + SPFL+ADIK
Sbjct: 1196 SKNYSTSDSGQCTQPQR---GSPFLQADIKA 1223
>gi|297602951|ref|NP_001053140.2| Os04g0486800 [Oryza sativa Japonica Group]
gi|255675574|dbj|BAF15054.2| Os04g0486800 [Oryza sativa Japonica Group]
Length = 873
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/721 (55%), Positives = 491/721 (68%), Gaps = 89/721 (12%)
Query: 125 KLRKCNGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSYRRTAS-----------ELELV 173
K + EGNFVRLN+N R+ K + K S+RR + E +LV
Sbjct: 182 KRARGGSEGNFVRLNINGYGRRRTFKNSQAKRSTKCRSWRRQRAAGATPRSQGDEEGDLV 241
Query: 174 EEA----------------VRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKK 217
EA V +VR++ S++NL LL YG+DSFR GQLEAI+ ++ +
Sbjct: 242 AEALLEREKQAASDSVLEAVESVREDPSEQNLKSLLNAAYGHDSFRQGQLEAIQQIVAGE 301
Query: 218 STMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPE 277
STMLVLPTGAGKSLCYQ+PAMILPGLTLVV PL++LM+DQLR LP + GG L+SSQ +
Sbjct: 302 STMLVLPTGAGKSLCYQVPAMILPGLTLVVSPLLSLMVDQLRKLPAFLPGGLLASSQTSD 361
Query: 278 EVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPS 337
E +T++ ++ G IKVLFVSPERFLN +FL IF T ISLV +DEAHC+SEWSHNFRPS
Sbjct: 362 EFHDTLQRLRAGEIKVLFVSPERFLNEEFLLIFRDTLPISLVAIDEAHCISEWSHNFRPS 421
Query: 338 YMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSL 397
Y+RLRASLLR +LNV+CILAMTATATT TL ++M+ALEIP NLIQ +Q+R+NLQLS+S
Sbjct: 422 YLRLRASLLRRKLNVQCILAMTATATTQTLEEIMNALEIPSDNLIQTSQIRENLQLSIST 481
Query: 398 SGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIP 457
S N ++ F RS Y Q ETD +S+YLCDN+I+ KSYHSG+
Sbjct: 482 SDNRLKDLMLLLKSPPFVDMRSIIVYCKFQA-----ETDFVSKYLCDNNITAKSYHSGLL 536
Query: 458 AKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
K+RSR+QELFCSNKIRVVVATVAFGMGLDK DV VIHYSLPESLEEY+QE GRAGRDG
Sbjct: 537 IKNRSRVQELFCSNKIRVVVATVAFGMGLDKSDVEGVIHYSLPESLEEYIQETGRAGRDG 596
Query: 518 RLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRK 577
RLS+CHL LD T++++RSL +SDGVD YA++KFL Q+F++ N+ G +CSL KE SRK
Sbjct: 597 RLSHCHLLLDSATFYKIRSLSHSDGVDGYAMSKFLYQIFSS-ENTTGCICSLAKELTSRK 655
Query: 578 FDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSE 637
FDIKEEV+LT+LT LE+G+ QY++LLP+ VTCTL FHK +
Sbjct: 656 FDIKEEVLLTILTQLEIGDQQYIRLLPQFSVTCTLYFHKFS------------------- 696
Query: 638 TKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCAL 697
G+ F ELKDPAYCY I+ P DF AL
Sbjct: 697 ---GEISF-------------------------------ELKDPAYCYVILWRPDDFNAL 722
Query: 698 SAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD 757
SA+LTKWLSEVE+ K+ KLD MF A FAV C++T GC+GS HTPC+QK I++YF DD
Sbjct: 723 SANLTKWLSEVESSKISKLDAMFALANFAVKGCKRTGGCSGSQHTPCIQKKIMEYFSKDD 782
Query: 758 NC---DVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTH 814
D ++ +SSPFL+ADIKVF+QSN AKFTPRAVARI+HGI+SPA+PS WSK H
Sbjct: 783 GTSENDCRTQLQKSSPFLQADIKVFIQSNSFAKFTPRAVARIMHGISSPAFPSVTWSKNH 842
Query: 815 F 815
F
Sbjct: 843 F 843
>gi|357167862|ref|XP_003581368.1| PREDICTED: ATP-dependent DNA helicase Q-like 5-like [Brachypodium
distachyon]
Length = 875
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/746 (54%), Positives = 507/746 (67%), Gaps = 102/746 (13%)
Query: 108 KKKQINLVSVDVPLPPA---KLRKCNGEGNFVRLNLN--NNKRKFANKGKRNKSFRGKLS 162
K+ N VS +VP+ A K + GEGNFVRLN+N KR F ++ +R+ +R S
Sbjct: 166 KRVHPNSVS-EVPMAAAEQPKRPRGGGEGNFVRLNINGYGRKRTFKSQARRSTKYR---S 221
Query: 163 YRRT-----------------------------ASELELVEEAVRAVRDEASDENLGRLL 193
+RR A V EAV R++ S++NL LL
Sbjct: 222 WRRQQPGGAKARGGVDEEGDFVAEALLEREKNGAGGGNGVLEAVEVAREDPSEQNLESLL 281
Query: 194 RLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVAL 253
RLV+G+DSFR+GQLEAI+ V+ +ST+LVLPTGAGKSLCYQ+PAMILPGLTLVV PL++L
Sbjct: 282 RLVFGHDSFREGQLEAIQNVVLGESTVLVLPTGAGKSLCYQLPAMILPGLTLVVSPLLSL 341
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M+DQLR LP + GG L+SSQ +E ET++ + G IKVLFVSPERFLN +FL IF T
Sbjct: 342 MVDQLRKLPAFLPGGLLASSQTGDEFHETLQRLCAGEIKVLFVSPERFLNEEFLLIFRDT 401
Query: 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSA 373
ISLVV+DEAHC+SEWSHNFRPSY+RLRASLLR +LN++CILAMTATATT TL+++++A
Sbjct: 402 LPISLVVIDEAHCISEWSHNFRPSYLRLRASLLRRKLNIQCILAMTATATTQTLQEIVNA 461
Query: 374 LEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHF 433
LEIP NLIQ +Q+R+NLQLS+S+S N ++ F RS Y Q
Sbjct: 462 LEIPSGNLIQTSQVRENLQLSISMSENRLKDLMLLLKSPPFVDMRSIIVYCKFQS----- 516
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
ETD + ++LCDN+I+ KSYHSG+P K+RSR+QELFCSNKIRVVVATVAFGMGLDK DV
Sbjct: 517 ETDYVCKHLCDNNITSKSYHSGLPMKNRSRVQELFCSNKIRVVVATVAFGMGLDKSDVEG 576
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLC 553
VIHY LPESLEEY+QE GRAGRDGRLS+CHL D T++++RSL +SDGVDEYA++KFL
Sbjct: 577 VIHYRLPESLEEYIQETGRAGRDGRLSHCHLLFDSTTFYKIRSLSHSDGVDEYAMSKFLY 636
Query: 554 QVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLN 613
Q+F++G N+ G +CSL KES SRKFDIKEEV+LT+LT LE+G+ QYL LLP+ VTCTL
Sbjct: 637 QIFSSG-NTTGCICSLAKESTSRKFDIKEEVLLTVLTQLEIGDDQYLHLLPQFSVTCTLY 695
Query: 614 FHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGE 673
FHK + L
Sbjct: 696 FHKFSGEL---------------------------------------------------- 703
Query: 674 ITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKT 733
+YELKDPAYCY +++ P D ALS +LT+WLSEVEN K+RKLD MF A +AV C++T
Sbjct: 704 -SYELKDPAYCYMVLKRPDDLNALSENLTRWLSEVENSKIRKLDAMFALANYAVKGCKRT 762
Query: 734 HGCNGSLHTPCLQKNILDYFRGDDNC----DVPNKIGQSSPFLRADIKVFLQSNLNAKFT 789
GC+GS HTPC+QK I+DYF G +N D + +SS FL++DIKVFLQSN AKFT
Sbjct: 763 SGCSGSQHTPCIQKRIIDYF-GKNNATSDDDYCTPLCKSSTFLQSDIKVFLQSNSFAKFT 821
Query: 790 PRAVARILHGIASPAYPSTIWSKTHF 815
PRAVARI+HGI+SPA+P+ WSK HF
Sbjct: 822 PRAVARIMHGISSPAFPAATWSKNHF 847
>gi|38346063|emb|CAD41405.2| OJ000223_09.17 [Oryza sativa Japonica Group]
Length = 874
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/721 (52%), Positives = 477/721 (66%), Gaps = 88/721 (12%)
Query: 125 KLRKCNGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSYRRTAS-----------ELELV 173
K + EGNFVRLN+N R+ K + K S+RR + E +LV
Sbjct: 182 KRARGGSEGNFVRLNINGYGRRRTFKNSQAKRSTKCRSWRRQRAAGATPRSQGDEEGDLV 241
Query: 174 EEA----------------VRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKK 217
EA V +VR++ S++NL LL YG+DSFR GQLEAI+ ++ +
Sbjct: 242 AEALLEREKQAASDSVLEAVESVREDPSEQNLKSLLNAAYGHDSFRQGQLEAIQQIVAGE 301
Query: 218 STMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPE 277
STMLVLPTGAGKSLCYQ+PAMILPGLTLVV PL++LM+DQLR LP + GG L+SSQ +
Sbjct: 302 STMLVLPTGAGKSLCYQVPAMILPGLTLVVSPLLSLMVDQLRKLPAFLPGGLLASSQTSD 361
Query: 278 EVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPS 337
E +T++ ++ G IKVLFVSPERFLN +FL IF T ISLV +DEAHC+SEWSHNFRPS
Sbjct: 362 EFHDTLQRLRAGEIKVLFVSPERFLNEEFLLIFRDTLPISLVAIDEAHCISEWSHNFRPS 421
Query: 338 YMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSL 397
Y+RLRASLLR +LNV+CILAMTATATT TL ++M+ALEIP NLIQ +Q+R+NLQLS+S
Sbjct: 422 YLRLRASLLRRKLNVQCILAMTATATTQTLEEIMNALEIPSDNLIQTSQIRENLQLSIST 481
Query: 398 SGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIP 457
S N ++ F RS Y Q ETD +S+YLCDN+I+ KSYHSG+
Sbjct: 482 SDNRLKDLMLLLKSPPFVDMRSIIVYCKFQA-----ETDFVSKYLCDNNITAKSYHSGLL 536
Query: 458 AKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
K+RSR+QELFCSNKIRV
Sbjct: 537 IKNRSRVQELFCSNKIRV------------------------------------------ 554
Query: 518 RLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRK 577
SY F + + SDGVD YA++KFL Q+F++ N+ G +CSL KE SRK
Sbjct: 555 -FSY---------NFTEQPFLGSDGVDGYAMSKFLYQIFSS-ENTTGCICSLAKELTSRK 603
Query: 578 FDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSE 637
FDIKEEV+LT+LT LE+G+ QY++LLP+ VTCTL FHKT+P LLADKD ++ ++L +SE
Sbjct: 604 FDIKEEVLLTILTQLEIGDQQYIRLLPQFSVTCTLYFHKTSPQLLADKDILIRSVLNRSE 663
Query: 638 TKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCAL 697
K G YVFDIP +AN + T +V + L LK GEI++ELKDPAYCY I+ P DF AL
Sbjct: 664 MKDGHYVFDIPRIANDLKITMNEVFDHLHKLKFSGEISFELKDPAYCYVILWRPDDFNAL 723
Query: 698 SAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD 757
SA+LTKWLSEVE+ K+ KLD MF A FAV C++T GC+GS HTPC+QK I++YF DD
Sbjct: 724 SANLTKWLSEVESSKISKLDAMFALANFAVKGCKRTGGCSGSQHTPCIQKKIMEYFSKDD 783
Query: 758 NC---DVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTH 814
D ++ +SSPFL+ADIKVF+QSN AKFTPRAVARI+HGI+SPA+PS WSK H
Sbjct: 784 GTSENDCRTQLQKSSPFLQADIKVFIQSNSFAKFTPRAVARIMHGISSPAFPSVTWSKNH 843
Query: 815 F 815
F
Sbjct: 844 F 844
>gi|242073516|ref|XP_002446694.1| hypothetical protein SORBIDRAFT_06g020690 [Sorghum bicolor]
gi|241937877|gb|EES11022.1| hypothetical protein SORBIDRAFT_06g020690 [Sorghum bicolor]
Length = 567
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/601 (59%), Positives = 428/601 (71%), Gaps = 67/601 (11%)
Query: 220 MLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEV 279
MLVLPTGAGKSLCYQ+PAMILPGLTLVV PL++LM+DQLR LP + GG L+S+Q +E
Sbjct: 1 MLVLPTGAGKSLCYQVPAMILPGLTLVVSPLLSLMVDQLRKLPAFLPGGLLASNQTSDEF 60
Query: 280 AETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYM 339
ET++ ++ G IKVLFVSPERFLN +FL IF ISLV +DEAHC+SEWSHNFRPSY+
Sbjct: 61 HETLQRLRGGEIKVLFVSPERFLNEEFLLIFRDGLPISLVAIDEAHCISEWSHNFRPSYL 120
Query: 340 RLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSG 399
RLRASLLR +LNV+CILAMTATATT TL ++++ALEIP NLI+ +Q+RDNLQLS+S S
Sbjct: 121 RLRASLLRRKLNVQCILAMTATATTQTLEEIVTALEIPSDNLIKTSQIRDNLQLSISTSN 180
Query: 400 NNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAK 459
N ++ F +S Y Q ETD +S+YLCDN+I+ KSYHSG+ K
Sbjct: 181 NRLKDLLLLLKSSPFVDMKSIIVYCKFQ-----GETDYVSKYLCDNNITAKSYHSGLAMK 235
Query: 460 DRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRL 519
+RSR+QELFCSNKIRVVVATVAFGMGLDK DV VIHYSLPESLEEY+QE GRAGRDGRL
Sbjct: 236 NRSRVQELFCSNKIRVVVATVAFGMGLDKSDVEGVIHYSLPESLEEYIQETGRAGRDGRL 295
Query: 520 SYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFD 579
SYCHL LD T+++ RSL +SDGVDEYA++KFLCQVF+ NS G +CSLVKES SRKFD
Sbjct: 296 SYCHLLLDSTTFYKSRSLSHSDGVDEYAMSKFLCQVFSCD-NSVGHICSLVKESTSRKFD 354
Query: 580 IKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETK 639
IKEEV+LT+LT LE+G QYL+LLP+ VTCTL FHK
Sbjct: 355 IKEEVLLTVLTQLEIGGQQYLRLLPQFSVTCTLYFHK----------------------- 391
Query: 640 QGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSA 699
GEI++ELKDPA Y I++ P D ALSA
Sbjct: 392 ------------------------------FSGEISFELKDPACIYVILKKPDDLNALSA 421
Query: 700 HLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFR----- 754
++TKWLSEVEN K+ KLD MF A FAV C++ GC+GS HT C+QK I+ YF
Sbjct: 422 NITKWLSEVENSKISKLDAMFDLANFAVKGCQRIDGCSGSQHTSCIQKKIIQYFSKNYST 481
Query: 755 GDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTH 814
D+NC P+K SSPFL+ADIKVFLQSN AKFTPRAVARI+HGI+SPA+PS WSK H
Sbjct: 482 SDNNCTQPHK---SSPFLQADIKVFLQSNSFAKFTPRAVARIMHGISSPAFPSATWSKNH 538
Query: 815 F 815
F
Sbjct: 539 F 539
>gi|168051272|ref|XP_001778079.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670518|gb|EDQ57085.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 342/731 (46%), Positives = 472/731 (64%), Gaps = 46/731 (6%)
Query: 123 PAKLRKCNGE-GNFVRLNLNN--NKRKFAN--KGKRNKSFRGKLSYRR------------ 165
P KLR GE NFV+LN+N +RKF N + KR + + +++R
Sbjct: 4 PTKLR--TGERDNFVKLNINGRGGRRKFTNGIRAKRPSVYGRRKTFKRYKKTSQDDGEPV 61
Query: 166 -------TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKS 218
+ +LE +EA + ++ENL +L+ V+G+++FR GQL AI+ VL +KS
Sbjct: 62 IDEGDNNSPEDLERCKEAANKALLDPTEENLSFILKRVFGHETFRQGQLVAIQRVLARKS 121
Query: 219 TMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEE 278
T+LVLPTGAGKSL YQ+PA IL GLTLV+ PLVALM DQL+ LPP++ GG ++SSQ E
Sbjct: 122 TLLVLPTGAGKSLSYQLPAYILTGLTLVISPLVALMADQLQKLPPLLPGGLINSSQTASE 181
Query: 279 VAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSY 338
E + + G IKVLF+SPER + FL+ + ISL VVDEAHC+SEWSHNFRPSY
Sbjct: 182 STEIMSKVISGHIKVLFISPERLFSETFLTAMDSLPEISLAVVDEAHCLSEWSHNFRPSY 241
Query: 339 MRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLS 398
RL +L+ RL+V C+LA+TATAT T + AL IP S +++ + +R NL+LSVS S
Sbjct: 242 YRL-GKILKQRLSVPCLLALTATATKDTECSITKALSIPSSGILEASCVRHNLRLSVSRS 300
Query: 399 GNNRQNERSAYVDEV-------FSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKS 451
+ + ++ + D + FS +S Y Q E D ISRYL +N I+ KS
Sbjct: 301 SHRQVTSQALHYDLLLLLQSIPFSDIKSIIIYCTYQA-----EADDISRYLEENKIAAKS 355
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIG 511
YHSG+ + +R+R+ +LFC NK+RVVVATVAFGMGLDK DVG+VIHY++P SLE YVQE G
Sbjct: 356 YHSGVSSSERTRVYQLFCHNKLRVVVATVAFGMGLDKSDVGSVIHYNMPRSLEHYVQETG 415
Query: 512 RAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVK 571
RAGRDG+ ++CHLFLDD Y +LRSL +SDG D +A+NKFLC+VF + ++ + S+
Sbjct: 416 RAGRDGKAAFCHLFLDDTDYLKLRSLAHSDGADTFAVNKFLCRVFQSPPDASKSMTSINV 475
Query: 572 ESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVAT 631
E + + D+KEEVM T+L+ +E+G++QY+ + +LK TC L F+ T+ LLA +VAT
Sbjct: 476 EQTATELDLKEEVMATILSFMEVGDVQYVHVHSKLKATCNLTFYATSAALLAKHSALVAT 535
Query: 632 ILK-KSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEV 690
+++ + + K G Y F +P +AN G + + V +L L+ GEI YEL+D A+C++++EV
Sbjct: 536 VIQNRCQPKNGNYTFQVPAIANDAGLSLLQVQQELQRLQSAGEIAYELQDLAFCFSVLEV 595
Query: 691 PSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVC--EKTHGCNGSLHTPCLQKN 748
P D CAL++ ++ LSEVE CKV KLD M+ AA A + +K G + LQ
Sbjct: 596 PDDICALTSSISARLSEVERCKVAKLDAMYTAAAAATALSSEDKNVGSVCTDQQLSLQSC 655
Query: 749 ILDYF--RGDD--NCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPA 804
I YF DD N VP+ + +S FL+ADIKVFL+++ N F RAVARI HG+ SPA
Sbjct: 656 IATYFSKNQDDLINQSVPSIVESTSSFLKADIKVFLKTHENKNFNGRAVARIFHGLWSPA 715
Query: 805 YPSTIWSKTHF 815
YP W K HF
Sbjct: 716 YPYAAWCKNHF 726
>gi|302784292|ref|XP_002973918.1| hypothetical protein SELMODRAFT_100480 [Selaginella moellendorffii]
gi|300158250|gb|EFJ24873.1| hypothetical protein SELMODRAFT_100480 [Selaginella moellendorffii]
Length = 769
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 330/729 (45%), Positives = 453/729 (62%), Gaps = 67/729 (9%)
Query: 130 NGEGNFVRLNLNNNKRK-----------------------FANKGKRNKSFRGKLSYR-- 164
N GNFV+LN+N RK F K + N GK
Sbjct: 37 NSAGNFVKLNINGKGRKNRKFLNRASSGKKSSYRGRRRSSFKKKDRDNAVDEGKDQIWED 96
Query: 165 ------------RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKM 212
+ E L +EA+ A++D +D+NL ++LR V+GY SFR GQ+E I+
Sbjct: 97 DGWCDSGNGEPLQRQDEACLPDEALAALKD-PTDQNLLKVLRSVFGYGSFRKGQVETIRC 155
Query: 213 VLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSS 272
VL +STMLVL TGAGKSLCYQ+ A +LPG TLV+ PL+ALM+DQLRHLP I G ++S
Sbjct: 156 VLSGQSTMLVLSTGAGKSLCYQLAAYLLPGTTLVISPLLALMVDQLRHLPSAIPGALINS 215
Query: 273 SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSH 332
+Q +E E + ++ GA+KVLF+SPER + FLS+ T ISL VVDEAHCVSEWSH
Sbjct: 216 TQSAKESLEVLEQVRTGAVKVLFISPERLYSESFLSVLTDLPSISLAVVDEAHCVSEWSH 275
Query: 333 NFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQ 392
NFRPSY RL S+LR ++ +C+LAMTATAT T V+S+L I +N++ + ++ NL
Sbjct: 276 NFRPSYYRL-GSVLRNKVKPKCVLAMTATATRKTKDSVLSSLGISSNNVLNQPEVPQNLV 334
Query: 393 LSVSLSGNNRQNERSAYVDEV-FSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKS 451
L+VS N+ + + ++ F +S Y Q E DL+ YL + S
Sbjct: 335 LTVSRCETNKLHALAQLLNSSPFVDAQSIIIYVKFQ-----NEADLVCNYLQSKGLLTDS 389
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIG 511
YH+G + R +QE FC NK+RVVVATVAFGMGLDK DV VIHYS+P S E YVQEIG
Sbjct: 390 YHAGRTLQTRREVQEKFCLNKLRVVVATVAFGMGLDKSDVRGVIHYSIPSSPEHYVQEIG 449
Query: 512 RAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVK 571
RAGRDG+ ++CHLFL++ +Y +LRSL +SDG DEYAINK L ++F +G L SL
Sbjct: 450 RAGRDGKPAFCHLFLENCSYLKLRSLAHSDGADEYAINKLLSRIFGSGRG----LQSLNI 505
Query: 572 ESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVAT 631
E A R+ D+KEEV+ T+L+ LE+GE Q+L++L LK TC L+FHK +P +LA + +
Sbjct: 506 EQACRELDLKEEVIATVLSYLEVGEEQHLRVLSSLKATCILHFHKGSPHVLARSNAFCSA 565
Query: 632 ILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVP 691
+L++ + K G Y ++P++ + T + + +L L+ RGEI YELKDPA+CY ++E P
Sbjct: 566 VLERKQEKNGGYTLNLPSLTAEMKVTLMQIQKELQALQTRGEIAYELKDPAFCYQVLESP 625
Query: 692 SDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILD 751
D C L++ L +LS+ E+CKVRKLD M++AA +V S +P ++ +I
Sbjct: 626 DDICMLTSKLADYLSQAESCKVRKLDAMYNAAALSV---------GPSAESP-IRASIKA 675
Query: 752 YFRGDDNCD-----VPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYP 806
YF D + D +P + +S FLRAD+KVFL+SN FT RA+ARI HG+ SP YP
Sbjct: 676 YF--DSSSDQQALTMPGFLKTTSSFLRADVKVFLRSN-EMDFTGRAIARIFHGLGSPMYP 732
Query: 807 STIWSKTHF 815
++ WS+ HF
Sbjct: 733 ASSWSRNHF 741
>gi|302771451|ref|XP_002969144.1| hypothetical protein SELMODRAFT_90579 [Selaginella moellendorffii]
gi|300163649|gb|EFJ30260.1| hypothetical protein SELMODRAFT_90579 [Selaginella moellendorffii]
Length = 769
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 333/729 (45%), Positives = 453/729 (62%), Gaps = 67/729 (9%)
Query: 130 NGEGNFVRLNLNNN---KRKFANKGKRNKS----------FR------------------ 158
N GNFV+LN+N RKF N+ K F+
Sbjct: 37 NSAGNFVKLNINGKGRKNRKFLNRASSGKKSSYRGRRRSSFKKKDCDNAVDEGKDQIWED 96
Query: 159 ------GKLSYRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKM 212
G + E L +EA+ A++D +D NL ++LR V+GY SFR GQ+E I+
Sbjct: 97 DGWCDSGNGEPLQRQDEACLPDEALAALKD-PTDHNLLKVLRSVFGYASFRKGQVETIRC 155
Query: 213 VLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSS 272
VL +STMLVL TGAGKSLCYQ+ A +LPG TLV+ PL+ALM+DQLRHLP I G ++S
Sbjct: 156 VLSGQSTMLVLSTGAGKSLCYQLAAYLLPGTTLVISPLLALMVDQLRHLPSAIPGALINS 215
Query: 273 SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSH 332
+Q +E E + ++ GA+KVLF+SPER + FLS+ T ISL VVDEAHCVSEWSH
Sbjct: 216 TQSAKESLEVLEQVRTGAVKVLFMSPERLYSESFLSVLTDLPSISLAVVDEAHCVSEWSH 275
Query: 333 NFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQ 392
NFRPSY RL S+LR ++ +C+LAMTATAT T V+S+L I +N++ + ++ NL
Sbjct: 276 NFRPSYYRL-GSVLRNKVKPKCVLAMTATATRKTKDSVLSSLGISSNNVLNQPEVPQNLV 334
Query: 393 LSVSLSGNNRQNERSAYVDEV-FSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKS 451
L+VS N+ + + ++ F +S Y Q E DL+ YL + S
Sbjct: 335 LTVSRCETNKLHALAQLLNSSPFVDAQSIIIYVKFQ-----NEADLVCNYLQSKGLLTDS 389
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIG 511
YH+G + R +QE FC NK+RVVVATVAFGMGLDK DV VIHYS+P S E YVQEIG
Sbjct: 390 YHAGRTLQTRREVQEKFCLNKLRVVVATVAFGMGLDKSDVRGVIHYSIPSSPEHYVQEIG 449
Query: 512 RAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVK 571
RAGRDG+ ++CHLFLD+ +Y +LRSL +SDG DEYAINK L +VF +G L SL
Sbjct: 450 RAGRDGKPAFCHLFLDNCSYLKLRSLAHSDGADEYAINKLLSRVFGSGRG----LQSLNI 505
Query: 572 ESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVAT 631
E A R+ D+KEEV+ T+L+ LE+GE Q L++L LK TC L+FHK +P +LA + +
Sbjct: 506 EQACRELDLKEEVIATVLSYLEVGEEQQLRVLSSLKATCILHFHKGSPHVLARSNAFCSA 565
Query: 632 ILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVP 691
+L++ + K G Y ++P++A + T + + +L L+ RGEI YELKDPA+CY ++E P
Sbjct: 566 VLERKQEKNGGYTLNLPSLAAEMKVTLMQIQRELQALQTRGEIAYELKDPAFCYQVLESP 625
Query: 692 SDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILD 751
D C L++ L +LS+ E+CKVRKLD M++AA +V S +P ++ +I
Sbjct: 626 EDICMLTSKLADYLSQAESCKVRKLDAMYNAAALSV---------GPSAESP-IRASIKA 675
Query: 752 YFRGDDNCD-----VPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYP 806
YF D + D +P + +S FLRAD+KVFL+SN FT RA+ARI HG+ SP YP
Sbjct: 676 YF--DSSSDQQALTMPGFLKTTSSFLRADVKVFLRSN-EMDFTGRAIARIFHGLGSPMYP 732
Query: 807 STIWSKTHF 815
++ WS+ HF
Sbjct: 733 ASSWSRNHF 741
>gi|358346534|ref|XP_003637322.1| ATP-dependent DNA helicase Q4 [Medicago truncatula]
gi|355503257|gb|AES84460.1| ATP-dependent DNA helicase Q4 [Medicago truncatula]
Length = 737
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/344 (67%), Positives = 274/344 (79%), Gaps = 8/344 (2%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
ETD ISRYL DN+I KSYHSGI AK+R +QELF SNKIRVVVATVAFGMGLDKRDVGA
Sbjct: 178 ETDQISRYLNDNNIKAKSYHSGISAKERGYVQELFGSNKIRVVVATVAFGMGLDKRDVGA 237
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLC 553
VIHYSLP SLEEYVQEIGRAGRDGRLSYCHLF DD YF+LRSLMYS+G+DEYA+NKFL
Sbjct: 238 VIHYSLPGSLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGIDEYAVNKFLS 297
Query: 554 QVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLN 613
+VF +S GK+CSL+KE ASR+FD+KEEV+LT+LT LELG++QYL LLP+ TC LN
Sbjct: 298 EVFPADKSSCGKICSLIKEPASRRFDMKEEVILTVLTRLELGDVQYLHLLPQTNATCVLN 357
Query: 614 FH-------KTTPTL-LADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQL 665
FH TP + LA K +A ILK+SE K GQY FDIPTVAN +G T ++++NQL
Sbjct: 358 FHMVRANRPSITPAVSLAQKVSAIAAILKRSENKHGQYTFDIPTVANDMGVTPVELTNQL 417
Query: 666 LNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVF 725
LK++GEITYE+KD AYCY I+E P+DF +LSA +T+WLSEVE CKVRK+D MF+AA F
Sbjct: 418 YALKLKGEITYEMKDMAYCYRILEAPADFFSLSADITRWLSEVECCKVRKMDAMFNAAYF 477
Query: 726 AVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
AV++C+K GC+ S HT CLQ+ ILDYF G DN D KI QSS
Sbjct: 478 AVNLCDKMSGCSSSDHTSCLQRIILDYFAGVDNADFCKKIDQSS 521
>gi|303275199|ref|XP_003056898.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461250|gb|EEH58543.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 676
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 253/657 (38%), Positives = 354/657 (53%), Gaps = 32/657 (4%)
Query: 179 AVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
A+RD D L +LR +G++SFR GQLE I+ VL S++ +LPTGAGKSL YQ+PA+
Sbjct: 5 ALRDPTEDA-LTDILRRAFGHESFRPGQLEVIRRVLRGGSSLALLPTGAGKSLTYQLPAL 63
Query: 239 ILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298
+ PGLTLVV PL+ALM DQLR LPP + G L S Q + + T+ ++ G KVLFVSP
Sbjct: 64 LFPGLTLVVSPLLALMSDQLRGLPPALPGAALRSDQSLDALFHTLDELRAGKFKVLFVSP 123
Query: 299 ERFLNADFLS-IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC-IL 356
ER LN FLS + T +SL VVDEAHCVSEWSHNFRP+Y RL +LRARL +C +L
Sbjct: 124 ERLLNERFLSDLRTVPGGVSLAVVDEAHCVSEWSHNFRPAYHRL-GRILRARLRADCPVL 182
Query: 357 AMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF 416
A++ATAT T + + + L IP + + +R NL LS +N + + E
Sbjct: 183 ALSATATARTEKSLRAQLRIPREGVHRNDVIRPNLILSAMRVPSNSREATLLHFLEREPM 242
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
H ++ + + + ++ YL + K+YH+G +DR+R Q F S +RVV
Sbjct: 243 HGKGS---VIVYTAFQNQAETVAAYLQTRGVGAKAYHAGQDPRDRARTQAQFFSGSVRVV 299
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
VATVAFGMGLDK DV AV++YSLP S E Y+Q+ GRAGRDG + C F+D Y RLRS
Sbjct: 300 VATVAFGMGLDKPDVRAVVNYSLPRSPEAYIQQAGRAGRDGLPARCVSFIDPSDYCRLRS 359
Query: 537 LMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGE 596
L ++DGVD+ A+++ L ++ ++ + C+ +A+ +V + +
Sbjct: 360 LSFTDGVDKNAVHRLLETLWD--ADAVRRRCAAATAAAAATTAAAADVHDDDDDGGDG-D 416
Query: 597 IQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILK-KSETKQGQYVFDIPTVANSIG 655
+++LP+++ TC L+FH T LA + +VA +L + +QG+Y F + A +
Sbjct: 417 DGLVRVLPDIRATCELSFHGTPADELASQCPLVAAVLAIGGKPRQGKYRFSVAAAARHMR 476
Query: 656 ATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEV-PSDFCALSAHLTKWLSEVENCKVR 714
V QL L G+ Y L+D A Y I P+D LSA L L+ VE V
Sbjct: 477 DGLEQVQAQLQALSANGQAAYRLEDRAVGYEIRRAPPTDLRPLSAALVDHLTAVEASAVA 536
Query: 715 KLDRMFHAAVFAVDVCEKTHGCNGSLHTPC------------LQKNILDYFRGDDNCDVP 762
KLD ++ A A D E SL + P
Sbjct: 537 KLDTVYGALERAAD-AEDDASQGASLRVALEAYLGAGCGAGCGADADGAAAAAAVAAEPP 595
Query: 763 NKIGQSSPF-LRADIKVFLQSNLNAK------FTPRAVARILHGIASPAYPSTIWSK 812
I P LRAD + L AK + RAVAR+LHG+ SPA+P+ W +
Sbjct: 596 QAINTEEPTSLRADARELLSERHGAKAGGAGIMSARAVARVLHGLGSPAFPAQEWRR 652
>gi|145346749|ref|XP_001417846.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578074|gb|ABO96139.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 685
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 246/662 (37%), Positives = 361/662 (54%), Gaps = 30/662 (4%)
Query: 173 VEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLC 232
++ AV + + S+ NL +L +G++ FR GQLE ++ VL ++T+ +LPTGAGKSL
Sbjct: 1 MQAAVLRAKSDPSEANLTEVLNRGFGHEQFRPGQLEIVQRVLRGENTLALLPTGAGKSLT 60
Query: 233 YQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIK 292
YQ+PA++LPGLT+V+ PL+ALM DQ+ LPP + GG L S ++ ET+ ++ G +K
Sbjct: 61 YQLPALLLPGLTIVISPLLALMADQMDSLPPSLPGGALRSDMDRRDMWETLTRLRAGELK 120
Query: 293 VLFVSPERFLNADFLS-IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLN 351
VLFVSPER LN F++ + +SL +DEAHCVSEWSHNFRP+Y RL +L R+
Sbjct: 121 VLFVSPERLLNEHFVNDLQNVPGGVSLACIDEAHCVSEWSHNFRPAYHRL-GRILNDRVQ 179
Query: 352 VECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVD 411
+ LA+TATAT T ++ L IP +++ ++RDNL LSV + + ER+ +
Sbjct: 180 AQTTLALTATATKKTEVSLIKQLGIPSEGVMRNVRVRDNLILSV-MRVPDVARERT--LC 236
Query: 412 EVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
+ + I+ + +++ ++ YL + I K+YH+G R + Q F +
Sbjct: 237 HMLKHDELLQEGSIIVYTATQRDSERVASYLYNEGIKAKAYHAGQEPAQRRQTQAEFMMS 296
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531
++RVVVAT+AFGMGLDK DV AVI++SLP S E Y+Q+ GRAGRDG + C FLD Y
Sbjct: 297 RVRVVVATIAFGMGLDKSDVRAVINFSLPRSPEAYIQQAGRAGRDGAPAACVTFLDPKDY 356
Query: 532 FRLRSLMYSDGVDEYAINKFLCQVFTNGM-------NSHGKLC--SLVKESASRKFDIKE 582
R RSL +SDGVD +I + L VF +G + C +L K D++
Sbjct: 357 LRSRSLTFSDGVDRPSITRLLQSVFESGPVMKKAKDEAEWTPCVGALSASEMEIKLDMRI 416
Query: 583 EVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILK-KSETKQG 641
E + T+L+CL+L +++LP+++ TC F+ +P + + A I+K + K
Sbjct: 417 EAIETVLSCLDLWGEGLIRILPDIRSTCEAQFYGRSPAEIGKDCPLAAAIVKLVPKPKAS 476
Query: 642 QYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEV-PSDFCALSAH 700
Y F I + DV++QL + +TY L D A + IV P D L+
Sbjct: 477 MYKFKIVDACMHMQTGFEDVASQLKAMSKNDNVTYTLSDRAVGFEIVRAPPKDIIPLAKA 536
Query: 701 LTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNC- 759
L SE+E C V KLD +++A + G CL +Y D +
Sbjct: 537 LADHCSEIEACSVGKLDALYNA--MDEAANAEDEEAQGEHLRQCLA----EYLNEDSDML 590
Query: 760 -DVPNKIGQSSPFLRADIKVFLQSNLNAK------FTPRAVARILHGIASPAYPSTIWSK 812
P + Q S L DIK L K T RA+AR+LH + SPAYPS WS+
Sbjct: 591 PSPPECVKQESQLLAPDIKTLLAHRSGGKVGGAGMMTARAIARVLHKLHSPAYPSKEWSR 650
Query: 813 TH 814
H
Sbjct: 651 HH 652
>gi|255077928|ref|XP_002502544.1| predicted protein [Micromonas sp. RCC299]
gi|226517809|gb|ACO63802.1| predicted protein [Micromonas sp. RCC299]
Length = 652
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 240/630 (38%), Positives = 339/630 (53%), Gaps = 70/630 (11%)
Query: 238 MILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVS 297
M+LPGLTLVV PL+ALM DQL LPP + G L S Q+P ++ T+ ++ G +KVLFVS
Sbjct: 1 MLLPGLTLVVSPLLALMTDQLHGLPPALPGAALRSDQKPAQLFGTLDELRAGRLKVLFVS 60
Query: 298 PERFLNADFLS-IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC-I 355
PER LN FLS + +SL VVDEAHCVSEWSHNFRP+Y RL +L++RL ++ +
Sbjct: 61 PERLLNERFLSDLRCVPGGVSLAVVDEAHCVSEWSHNFRPAYHRL-GRILQSRLQLQGPV 119
Query: 356 LAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLS-VSLSGNNRQNERSAYVDEVF 414
LA++ATAT T R + S L IP + +R NL L+ + + N+R D
Sbjct: 120 LALSATATARTERHLRSQLCIPKEGAYRNDTIRPNLTLAAMRVPANSR--------DPTL 171
Query: 415 SFHRSSKHYY----ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS 470
+ + + Y ++ + + + ++ YL + K+YH+G KDR+R Q F
Sbjct: 172 FYMLTKEPEYSEGSVIVYTAFQNQAETVAAYLQTKGVVAKAYHAGQEPKDRARTQAQFFG 231
Query: 471 NKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530
+RVVVATVAFGMGLDK D+ AVI+YSLP S E Y+Q+ GRAGRDG+ + C F+D
Sbjct: 232 GSVRVVVATVAFGMGLDKPDIRAVINYSLPRSPEAYIQQAGRAGRDGQPARCVSFIDPQD 291
Query: 531 YFRLRSLMYSDGVDEYAINKFLCQVFTNGMN---SHGK--LCSLVKESASRKFDIKEEVM 585
+ RLRSL ++DGVD + K L +VF + G+ + +L+ + R+ D++ EV+
Sbjct: 292 FTRLRSLSFTDGVDRPTVLKLLEKVFLGKQKDAVAEGRQTVGALIVQKLERELDMRGEVI 351
Query: 586 LTLLTCLEL--------------------------------GEIQYLQLLPELKVTCTLN 613
T+L+CLEL G +++LP+++ TC L
Sbjct: 352 ETVLSCLELWDDAEISRRCAATASEDGADGVEALEGDASNEGVGHLIRVLPDMRATCELR 411
Query: 614 FHKTTPTLLADKDKMVATILK-KSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRG 672
FH TP LA + +VA +L+ + K G Y F + A + +VS QL L G
Sbjct: 412 FHGKTPEQLATQCPLVAAVLQIGGKPKAGAYRFSVAEAARRMNDGLEEVSAQLQALSANG 471
Query: 673 EITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEK 732
E YEL D A Y I+ P D L+A L L+ VE V KLD ++ A V A D CE
Sbjct: 472 EAAYELTDRAVGYEILHPPPDLRQLAAALADHLARVEASTVEKLDTVYGALVAAAD-CED 530
Query: 733 THGCNGSLHTPCLQKNILDYFRGDDNCDVP---NKIGQSSP-FLRADIKVFLQSNLNAK- 787
SL T ++ Y GD VP + + + P LR D++ L + K
Sbjct: 531 DESQGASLRT-----SLEAYLGGDGAFHVPDLADVVSKEEPRRLRDDVRELLTTRSGGKT 585
Query: 788 -----FTPRAVARILHGIASPAYPSTIWSK 812
+ RAVAR+LHG+ SPAYP+ W +
Sbjct: 586 GGAGAMSARAVARVLHGLGSPAYPAQEWRR 615
>gi|356510887|ref|XP_003524165.1| PREDICTED: uncharacterized protein LOC100783165 [Glycine max]
Length = 1272
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 159/233 (68%), Positives = 194/233 (83%)
Query: 583 EVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQ 642
+VMLTLLT LELG++QYLQL P++ +TCTLNFHK+ P LLA K +A ILK+SE K GQ
Sbjct: 873 QVMLTLLTRLELGDVQYLQLHPQINITCTLNFHKSPPPLLAQKVSAIAVILKRSENKHGQ 932
Query: 643 YVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLT 702
Y+FDIPTVAN +G T ++++NQL +LK+ GEITYE+KD AYCY I+EVP+D +LSA T
Sbjct: 933 YIFDIPTVANDMGVTAVELTNQLYDLKLMGEITYEMKDLAYCYRIIEVPTDLLSLSADNT 992
Query: 703 KWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVP 762
+WLSEVENCKVRK+D MF+AA FA+++C+ GC G+ HTPCLQ+ ILDYF G DN D
Sbjct: 993 RWLSEVENCKVRKMDAMFNAAYFALNLCDNMQGCGGANHTPCLQRKILDYFSGVDNADFC 1052
Query: 763 NKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
KIGQSSPFLRAD+KVFLQSN +A+FTPRAVAR++HGIASPAYPST WSKTHF
Sbjct: 1053 KKIGQSSPFLRADLKVFLQSNSHARFTPRAVARVMHGIASPAYPSTAWSKTHF 1105
>gi|384245105|gb|EIE18601.1| ATP-dependent DNA helicase [Coccomyxa subellipsoidea C-169]
Length = 891
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 236/676 (34%), Positives = 364/676 (53%), Gaps = 53/676 (7%)
Query: 171 ELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKS 230
+L EEA+ ++E L L V+G+ +FR QL I+ VL ST+ VLPTGAGKS
Sbjct: 213 QLAEEAM-------TEEALTERLHSVFGFAAFRGLQLPVIQSVLRSISTLAVLPTGAGKS 265
Query: 231 LCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGA 290
LCYQ+PA++ GL LVV PL+ALM DQL HLP + G L S Q+ + +T+R ++ G
Sbjct: 266 LCYQVPALLCGGLVLVVSPLIALMKDQLAHLPKGLPGAMLWSGQQAAQAMQTLRDVREGR 325
Query: 291 IKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARL 350
I+VL+V+PER + LS + LV +DEAHC++EW HNFR +Y RL +LR +
Sbjct: 326 IRVLYVAPERMGSPSLLSALAPMMPLPLVCIDEAHCIAEWGHNFRSAYFRL-GRMLRENI 384
Query: 351 NVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV 410
+LA+TATAT T ++ AL I S + + A LRDNL+ +V + N E +
Sbjct: 385 PCRAVLALTATATKATEASMVQALGIAPSAVFRDASLRDNLRFNVHHT--NGGTEAGHFK 442
Query: 411 DEVFSFHRS----SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQE 466
+ R + ++ + + + ++ +L + I +YH+G K+R +Q+
Sbjct: 443 AMLLKLLRPGGALADRKAVVVYTTFQMQAEQVAAHLHSHGIPAAAYHAGKHFKERESVQD 502
Query: 467 LFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+F ++RVVVATVAFGMG+D V AV+H +LP+SLEEYV GRAGRDG + CHLFL
Sbjct: 503 MFGKGRLRVVVATVAFGMGVDAGGVQAVVHLTLPQSLEEYV---GRAGRDGSEALCHLFL 559
Query: 527 DDITYFRLRSLMYSDGVDEYAINKFLCQVF----TNGMNSHG---KLCSLVKESASRKFD 579
DD + RLRSL +SD V ++ +FL VF T G S G + L + + D
Sbjct: 560 DDADFRRLRSLSHSDAVSAASVLQFLDTVFVLDETEGEASEGDGSRYAVLGADELACSLD 619
Query: 580 IKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKK-SET 638
+K EVM TLLT LE + Y+++L + T ++F +T LA + + ++L +
Sbjct: 620 MKAEVMETLLTYLEAHKETYVRVLSSVGRTAKVSFFNSTCQELAPRQPALESLLAVCPKP 679
Query: 639 KQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPA-YCYTIVEVPSDFCAL 697
+ G Y + AN+ G + QL L R E+ +E+ + + +V+ P L
Sbjct: 680 RAGNYTVHMARWANAAGMAPSVLLQQLAALARRDELRFEVDSKSTLTFQVVKRPDCLEDL 739
Query: 698 SAHLTKWLSEVENCKVRKLD---RMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFR 754
+ L +E+ ++R+LD +M AA + + H H + K YF
Sbjct: 740 AEELAARHTEIGRRRLRRLDTTYKMLAAAASKPNQASQEH------HIRDVAKQ---YFE 790
Query: 755 GDDNCDVPNKIGQ-----------SSPFLRADIKVFLQSN----LNAKFTPRAVARILHG 799
+++ + + +S F+ D+++ L+ + + A+ T RAVARILHG
Sbjct: 791 AEEDSSGAGQSAEAEEAEGLPLETASNFMAKDVRMLLRESASIKVGAQLTGRAVARILHG 850
Query: 800 IASPAYPSTIWSKTHF 815
++S A+P+ W+K +
Sbjct: 851 LSSSAFPAAQWNKCGY 866
>gi|118395195|ref|XP_001029950.1| ATP-dependent DNA helicase, RecQ family protein [Tetrahymena
thermophila]
gi|89284232|gb|EAR82287.1| ATP-dependent DNA helicase, RecQ family protein [Tetrahymena
thermophila SB210]
Length = 1083
Score = 332 bits (850), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 189/532 (35%), Positives = 312/532 (58%), Gaps = 48/532 (9%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
+ SDENL ++L++VYG+++FR GQ+E+IK +++K+ST++V TG GKSL YQ P + + G
Sbjct: 363 DHSDENLVKVLQVVYGFNNFRSGQIESIKSIINKQSTLIVQSTGHGKSLIYQFPTLFMKG 422
Query: 243 LTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
+ +V+CPL++LM+DQ++ LP I G +SS E+ + I+LI+ + +L++SPE L
Sbjct: 423 MAIVICPLISLMMDQIQKLPKYIKGVAYNSSLTQEQKQKVIQLIKENQVMLLYISPE-VL 481
Query: 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
+DF F IS V +DEAHC+SEWSHNFR SY+ + L++ +L + I+A+TATA
Sbjct: 482 QSDFSYFFKCLPEISYVCIDEAHCISEWSHNFRTSYLIIN-ELIQKKLKCDQIIALTATA 540
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
T T + +M L+I +N+ + + + RDNL++S+S + + +A ++ +
Sbjct: 541 TLQTQQSMMDKLKI--TNVFRSSSVKRDNLRISISRDSD----KNTALLNLIKCLPIKDT 594
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
++ K F+ + ++++L N I +YHSG K +++IQ+ F +R+VVAT+A
Sbjct: 595 DSIVIYCKYK-FQCETLAQFLTYNGIPSGAYHSGCEDKRKAQIQQDFMEGNLRIVVATIA 653
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541
FGMG+DK D+ AVIH ++P+++E YVQE GRAGRDG +SYCH+FLDD ++R +YSD
Sbjct: 654 FGMGIDKSDIRAVIHLNMPKTVENYVQEAGRAGRDGNISYCHMFLDDEDFYRNCGHVYSD 713
Query: 542 GVDEYAINKFLCQVFTNGMNSHGKLCSLVK-----------------ESASRKF------ 578
VD + F ++ + N K ++ K ESA K+
Sbjct: 714 SVDYSTLKLFYEKIKKSIYNIEDKSRTVRKQKNKMGKEEIIFDKQLMESAQSKYCFIELK 773
Query: 579 ------DIKEEVMLTLLTCLELGEIQ-----YLQLLPELKVTCTLNFHKTTPTLLADKDK 627
D K+E + TL+ +++G+ Q ++ P C++ F++ P +A KD
Sbjct: 774 ESMLELDSKKETLQTLI--MKIGQFQNQDNPIFKIYPIGYKNCSIWFYQGVPDEMAKKDD 831
Query: 628 MVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL--KMRGEITYE 677
++ IL+ S G Y F+I + N IG I++ +L K++ E+ E
Sbjct: 832 LIKRILEISMITHGCYTFNICDMCNQIGMDPIELQKKLREFFPKIKNELKEE 883
>gi|412989172|emb|CCO15763.1| ATP-dependent DNA helicase RecQ [Bathycoccus prasinos]
Length = 1288
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 243/731 (33%), Positives = 348/731 (47%), Gaps = 110/731 (15%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E L +L +G+ F+ GQ++ I VL +T+ +LPTGAGKSL YQ+PA++LPG+TLV
Sbjct: 521 EKLRLVLERGFGFPVFKPGQIDVILRVLRGANTLALLPTGAGKSLTYQLPALLLPGITLV 580
Query: 247 VCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
+ PL+ALM DQ+R LPP + G L S E+ ET+ ++ G + +LFVSPER LN F
Sbjct: 581 ISPLLALMSDQMRGLPPALKGACLRSDASYEKTEETLEEVKSGNVSILFVSPERLLNEKF 640
Query: 307 L-SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL----LRARLNVEC------- 354
L ++ + +SL +DEAHCVSEWSHNFRP+Y RL + L +R+ +N
Sbjct: 641 LCALRECPNGVSLACIDEAHCVSEWSHNFRPAYHRLGSILFNRVMRSGMNNNNNNGKMFP 700
Query: 355 ILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVF 414
+LA+TATAT T + L I N ++ +RDNL LSV + +N + F
Sbjct: 701 VLALTATATKKTEMSLRETLNIAPENALRNDAIRDNLSLSVIRVPSCSRNSTLLH----F 756
Query: 415 SFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
K I+ ++ K+ E + ++ YL + + YH+G+ +R R Q F NK+R
Sbjct: 757 LQKDHPKGAAIVYVAFKN-EAESVANYLKVQGVVARPYHAGLDKSERHRTQMQFQENKVR 815
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRL 534
V+VATVAFGMGLDK DV VI+Y+LP S E Y+Q+ GRAGRDG ++C FLD Y R
Sbjct: 816 VIVATVAFGMGLDKPDVRYVINYALPRSPEAYIQQCGRAGRDGNEAHCLTFLDPEDYLRS 875
Query: 535 RSLMYSDGVDEYAINKFLCQVF-TNG---------------------------------- 559
RSL ++DG D +I + VF NG
Sbjct: 876 RSLTHADGCDVTSIRDLMEIVFLGNGDVLKPKTTQKKKKKQVSEEVFRDEDDDIEKRKTD 935
Query: 560 MNSHG----KLCSLVKESASRKFDIKEEVMLTLLTCLELG-----------------EIQ 598
+++G KL + + + D+K E + T L+CLEL + +
Sbjct: 936 YDAYGNWIPKLGRIKPDVIAPVIDVKLEAIETALSCLELWGRDAQSITSPGSRDVKLDEE 995
Query: 599 Y---LQLLPELKVTCTLNFHKTTPTLLADKDKMVATILK--KSETKQGQYVFDIPTVANS 653
Y L++LP+ + TC + F P +A + +V ILK G +FDI A
Sbjct: 996 YSNLLRVLPDFRSTCEIRFFGRDPKEIAKQSTLVDAILKLCPEPKADGARIFDICKAAFL 1055
Query: 654 IGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVP---SDFCALSAHLTKWLSEVEN 710
+ DV+ QL L+ E YE++D A + I+ P L+ LTK L VE
Sbjct: 1056 SNCSLDDVAFQLKALRDNREAGYEIRDRALGFEILRDPPKGDKLRKLAFDLTKRLDAVEK 1115
Query: 711 CKVRK-----------------------LDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQK 747
V K L + A + + P +
Sbjct: 1116 GSVGKLDALYAALDYAADAEADDVQGARLRESLKWYLNASEEEGEEEEVERVEEDPNGGE 1175
Query: 748 NILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAK------FTPRAVARILHGIA 801
+ R + P + L ADI+ L + K RAVARILHGI
Sbjct: 1176 EDVPVRRVAEGAKRPKCVLTEKRMLVADIREILTHRRDGKVGGAGMLRARAVARILHGIG 1235
Query: 802 SPAYPSTIWSK 812
SP YP+ W +
Sbjct: 1236 SPKYPAAEWRR 1246
>gi|328769991|gb|EGF80034.1| hypothetical protein BATDEDRAFT_25649 [Batrachochytrium dendrobatidis
JAM81]
Length = 1514
Score = 329 bits (844), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 227/717 (31%), Positives = 364/717 (50%), Gaps = 95/717 (13%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL------- 240
+L L+ + G DSFR+GQ EAI +L KST++VLPTG GKSLCYQ+PA I+
Sbjct: 782 DLNLALQRLCGLDSFREGQYEAIARILSGKSTLVVLPTGGGKSLCYQLPAFIIRHIPQAQ 841
Query: 241 PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETI-RLIQVGAIKVLFVSPE 299
P L L+V P ++LM DQ+R LP I LSS + V I + ++ + ++FV+PE
Sbjct: 842 PSLILIVSPTISLMRDQMRCLPAGIRAACLSSGHQSASVTREIYKKLEFNELDIIFVAPE 901
Query: 300 RFLNADFLSIFTATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILA 357
R +A F+ + + I + +DEAHC+SEWSHNFRPSY+ L ++L+ L VEC +A
Sbjct: 902 RLQSASFVELIQTGKIMPIQIAYIDEAHCLSEWSHNFRPSYLHLH-NILKKTLGVECFVA 960
Query: 358 MTATATTTTLRDVMSALEIPLSN--LIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDE-- 412
++ATAT T R + L I N ++ + +R+NL +SV+ +S ++ ++ + VD
Sbjct: 961 LSATATLPTRRSICGMLNIDQENGCIVSPSIIRNNLNVSVTPVSADDSRD--ATLVDMLR 1018
Query: 413 -----------VFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDR 461
V++ ++S + I + D +++YL +YH+G + R
Sbjct: 1019 TLPYRNLESIIVYTMFQAS--HLIPDFWSVTAQADRVAQYLRVRDFDADAYHAGKTPEQR 1076
Query: 462 SRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSY 521
+Q F ++R++VATVAFG+G++K++V +VIHYS+P S+E+Y+QEIGR+GR+G +Y
Sbjct: 1077 EYVQSRFQHGRLRIIVATVAFGLGINKQNVRSVIHYSMPRSIEDYMQEIGRSGRNGEPAY 1136
Query: 522 CHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFT--------NGMNSHGKLCSLVKES 573
C+LFL Y + RS ++SDGVDE I + L +F G + + VK +
Sbjct: 1137 CNLFLVQEDYVKHRSFVFSDGVDEAGIWRLLKVLFPPVKSGKPGAGCRDNRAGSANVKAN 1196
Query: 574 AS-----------RKFDIKEEVMLTLLTCLELGEIQY--LQLLPELKVTCTLNFHKTTPT 620
S + DI+E V+ T+L+ +EL + +++ P L T TL K
Sbjct: 1197 DSIRLILPIQNLESQLDIRESVISTMLSYIELSDTDNPPIKVFPTLSSTYTLFCSKAKLE 1256
Query: 621 LLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKD 680
LA+ ++ T + FD VA S G V+ +L + E+ + D
Sbjct: 1257 TLAESSDVIRWARVHGSTIKYGLEFDTLKVAESAGVEPSTVATELWKYQASKELKFNSGD 1316
Query: 681 PAYCYTIVEVPSD-------FCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAV------ 727
A+ + +D L L K +S +E+ KLD ++ A+
Sbjct: 1317 KAFNILVNRAWTDANEKQAFLDGLCDSLFKKMSAIESASAWKLDYLYETLYAAIRDPLDM 1376
Query: 728 -------DVCEKTHGCNGSLHT--PCLQKNILD----YFR----GDDNCDVPNKIGQSSP 770
+ ++ +L P Q+ +++ YF+ G D + +K G P
Sbjct: 1377 DTSLPSNSITNESESAANTLAESLPIAQQTLMNSIMLYFQLPEIGKDQLE-GDKWGFRDP 1435
Query: 771 FL-----------RADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIW-SKTHF 815
L IK F++++L+ + RAVARI HG++SP YP+ IW S H+
Sbjct: 1436 ELIEKQKLAKINVEISIKSFVKAHLSEVTSGRAVARIFHGLSSPKYPAKIWLSNKHW 1492
>gi|291001209|ref|XP_002683171.1| predicted protein [Naegleria gruberi]
gi|284096800|gb|EFC50427.1| predicted protein [Naegleria gruberi]
Length = 781
Score = 329 bits (843), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 224/724 (30%), Positives = 380/724 (52%), Gaps = 57/724 (7%)
Query: 131 GEGNFVRLNLN----NNKRKFANKGKRNKSFRGKLSYRR-----------------TASE 169
E NFV+LN+ +K++F G R + K ++ + T S+
Sbjct: 38 SEPNFVKLNMKRKGFKSKKRFKPSGARFSNNLSKKNFNKLNNTEEDQSLDQEITNDTYSD 97
Query: 170 LELVEE-------AVRAVRDEA--SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTM 220
+E E +++ DE S E +L+ + ++SFR GQ E I +++ +S++
Sbjct: 98 IEEKESTNFDDTISLKYSMDEIIRSKEKAEEILQEFFSHESFRPGQFETISRIMNNQSSL 157
Query: 221 LVLPTGAGKSLCYQIPAMILP----GLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRP 276
L+ TG+GKS CYQ PA+ + +VV PL++LM DQL++L P + G L+++Q
Sbjct: 158 LISGTGSGKSTCYQFPALCMTLGKLEFAIVVSPLISLMEDQLKNLIPTLPGSILTNNQSS 217
Query: 277 EEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRP 336
++ ++ I I+ G K+LF+SPER + F+ IS +DEAHC+SEWSHNFRP
Sbjct: 218 QQKSKIINDIRKGITKILFISPERLCDPKFIEQLRQLPKISFACIDEAHCMSEWSHNFRP 277
Query: 337 SYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVS 396
SY+ ++ ++L L V ILAMT TAT T + L I + ++ R NL ++S
Sbjct: 278 SYLSIK-NVLGKDLGVTTILAMTGTATRHTEESICEYLHIEKDGIYRQTLARHNLIKTIS 336
Query: 397 LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGI 456
L ++ +A ++ + S + I+ + + + + + +L N I YH+G+
Sbjct: 337 LGIPSK---FTAVLNLLNSERMRNCKESIIIYAMQRRDAEQLCSHLIMNGIHAIPYHAGL 393
Query: 457 PAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD 516
R IQ F +I ++VATVAFGMG++ +V AVIH++LP+S+E Y+QEIGRAGRD
Sbjct: 394 DTSKRKEIQNKFVKKEINIIVATVAFGMGINISNVQAVIHFNLPKSIESYIQEIGRAGRD 453
Query: 517 GRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASR 576
G + CH+ LDD Y +RSL YS+ VD + + K + +VF + N G + ++ + +
Sbjct: 454 GSQAQCHMLLDDDDYLLIRSLCYSNYVDVFTVKKLIQKVFKD--NEIGTVIAMGIKQLEK 511
Query: 577 KFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKS 636
D+KEEV+ T+LT L+ Y+++LP++ T+ F K+TP L+ K + L+ S
Sbjct: 512 HLDLKEEVISTILTLLQSK--GYVKVLPQMNHIFTIYFMKSTPVELSKKHAWIKIALQNS 569
Query: 637 ETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCA 696
K ++ DI ++ T + +++ LK GEI YE K A+C +V+ D
Sbjct: 570 --KSTKFEIDISKLSKEASITLSQLEMEIIGLKEIGEIKYESKSEAFCLEVVKDVDDIIQ 627
Query: 697 LSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYF--- 753
+S +T+ + +E V K M+ A + E++ T + + I YF
Sbjct: 628 VSTIITEEMKSLEKINVHKSKAMYKLAREFIISDEESQKSQPKRKTG-MDELIDSYFTSE 686
Query: 754 RGDDNCDVPNKIGQSSPFLRADIKVFLQSN---LNAKF----TPRAVARILHGIASPAYP 806
+ +D N I ++ L+ + ++ +Q++ L K+ + +A+IL G+++P +
Sbjct: 687 KEEDFLSSENDIAKTE--LKGNDRITIQADCFVLLRKYESIPNAKVLAKILTGLSTPNFN 744
Query: 807 STIW 810
W
Sbjct: 745 VEFW 748
>gi|308804427|ref|XP_003079526.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri]
gi|116057981|emb|CAL54184.1| ATP-dependent DNA helicase (ISS), partial [Ostreococcus tauri]
Length = 973
Score = 325 bits (834), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 209/555 (37%), Positives = 306/555 (55%), Gaps = 43/555 (7%)
Query: 173 VEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLC 232
+E A++ + + + ENL +L +G+D+FR GQLE I +L ++T+ +LPTGAGKSL
Sbjct: 406 LEAAIQRAKSDPNKENLTEVLTRGFGHDNFRPGQLEIITRILRGENTLALLPTGAGKSLT 465
Query: 233 YQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIK 292
YQ+PAM++ GLT+V+ PL+ALM DQ+ LPP + GG L S ++ ET+ ++ G IK
Sbjct: 466 YQLPAMLISGLTIVISPLLALMADQMDSLPPSLPGGALRSDMDRNDMWETLTRLRAGKIK 525
Query: 293 VLFVSPERFLNADFLS-IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLN 351
VLFVSPER LN +F++ + +SL VDEAHCVSEWSHNFRP+Y RL +L R+
Sbjct: 526 VLFVSPERLLNDNFINDLQDVPGGVSLACVDEAHCVSEWSHNFRPAYHRL-GRILNDRVR 584
Query: 352 VECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV- 410
+ LA+TATAT T ++ L IP +++ ++RDNL LSV + + Y+
Sbjct: 585 AKTTLALTATATKKTELSLIRQLNIPNEGVLRNVRVRDNLILSVMRVPEKLREKTLVYML 644
Query: 411 --DEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELF 468
DE+ + I+ + +++ ++ +L + + K+YH+G R + Q F
Sbjct: 645 KHDELL------QTGSIIVYTATQRDSERVAAFLYNEGVKAKAYHAGQEPAQRRQTQAEF 698
Query: 469 CSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
+++RVVVAT+AFGMGLDK DV AVI++SLP S E Y+Q+ GRAGRDG + C FLD
Sbjct: 699 MGSRVRVVVATIAFGMGLDKSDVRAVINFSLPRSPEAYIQQAGRAGRDGAPAACITFLDT 758
Query: 529 ITYFRLRSLMYSDGVDEYAINKFLCQVFTNG-----MNSHGKLCSLVKE-SASR---KFD 579
Y R RSL +SDGVD +I K L V +G G V SAS K D
Sbjct: 759 SDYLRSRSLTFSDGVDRPSIAKLLQFVLQSGPILKKAAHEGDWTPCVGALSASEMEIKID 818
Query: 580 IKEEVMLTLLTCLEL-GE---------------------IQYLQLLPELKVTCTLNFHKT 617
++ E + T+L+CL+L GE +++LP+++ TC F +
Sbjct: 819 MRIEAIETVLSCLDLWGEGIIDIRSQDASVVNELDPAHAKGLIRILPDIRATCEAEFFER 878
Query: 618 TPTLLADKDKMVATILKKSETKQGQ-YVFDIPTVANSIGATTIDVSNQLLNLKMRGEITY 676
P + + + A I K +G + F I + +VS QL L + Y
Sbjct: 879 PPKAIGEDCPLAAAIDKLVPKPKGSMHKFKIVDACTHMQCGFDEVSAQLKALAKHDNVRY 938
Query: 677 ELKDPAYCYTIVEVP 691
L D A + IV P
Sbjct: 939 TLSDRAVGFEIVRAP 953
>gi|167517271|ref|XP_001742976.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778075|gb|EDQ91690.1| predicted protein [Monosiga brevicollis MX1]
Length = 1241
Score = 323 bits (827), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 231/664 (34%), Positives = 335/664 (50%), Gaps = 61/664 (9%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLVA 252
+GYD FR GQ AI VL ++ST+L+L TG GKSLCYQ+P + L + LV+ PL++
Sbjct: 560 FGYDEFRHGQEAAIARVLRQQSTLLILATGTGKSLCYQLPLLYLTDQFRCMGLVITPLLS 619
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF--LSIF 310
L+ DQ+ LP + G L+S+ PE+V+ T + G I VLF++PE + + L +
Sbjct: 620 LIQDQIAQLPKGLRGAALNSTLTPEQVSATKVAVLEGRIDVLFIAPETLITSWLQQLLLH 679
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I+ VDEAHCVSEWSHNFRP+Y+R+ A +L+ V ILA+TATAT T R +
Sbjct: 680 RDAPRIAFATVDEAHCVSEWSHNFRPAYLRI-AGVLQNVFGVHNILALTATATLVTQRSI 738
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I S +I+ + NLQL+ S + +Q R Y+ +V H S+ I+ S
Sbjct: 739 QTHLGIEDSGIIRLFSVPSNLQLAASTPMDRKQ--RLVYLLKVH--HLYSEGATIVYCS- 793
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K ET+ ++R L I+ ++YH+G+PA R R+Q F ++KIRV++AT+AFGMGL+ +
Sbjct: 794 KQKETEALARTLRAEGIAAQAYHAGLPATTRQRVQRAFATSKIRVIIATIAFGMGLNIHN 853
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
V VIHYSLP + E Y QE+GRAGRDG +YCH+F R Y D VD I +
Sbjct: 854 VRVVIHYSLPHAPEAYAQEVGRAGRDGLPAYCHVFAHPEDLETHRCHAYGDSVDLVGIKR 913
Query: 551 FLCQV-------------FTNGMNSHGKLCSLVKESASRK---------------FDIKE 582
+ V M G + A+++ D+KE
Sbjct: 914 LMEYVAGPAAISTTTVSRIRAQMRQTGATGQALATQAAKQRIFHGVLDLDEISVLLDLKE 973
Query: 583 EVMLTLLTCLELGEIQYLQLLPELKVTCTLN-----FHKTTPTLLADKDKMVATILKKSE 637
V+ T+L+ LEL +QL + T + F T P L A + A ++
Sbjct: 974 TVLTTMLSNLELLSSGNIQLGSRCAASITFHVRDEAFATTDPLLRA----VSAAARPQAG 1029
Query: 638 TKQGQYVFDIPTVANSIGATTIDVSNQLLNLK-MR--GEITYELKDPAYCYTIVEVPS-- 692
++G V D + AT + S ++NL MR G+I E + +++ E S
Sbjct: 1030 GRKGHEVLDAHGLMEVAAATGLKPSEIVINLHGMRAAGKIFCEEGNTGVAFSLREPLSTD 1089
Query: 693 DFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGS-LHTPCLQKNILD 751
A A L S E ++K + M HA V + E T S L +++ +
Sbjct: 1090 QVDAWVAALADKASAFERSLLQKSEEM-HAIVESAAAMEGTETATASSLANQLIRQRLEK 1148
Query: 752 YFRGDD---NCDVPNKIGQSSPFLRADIKVFLQ--SNLNAKFTPRAVARILHGIASPAYP 806
YF + + K Q LR I FL+ S + TPR VARI +GI SPA+P
Sbjct: 1149 YFEATEPSLQSSLGGKRIQDEAPLRRAIHAFLERRSPDERRLTPRVVARIAYGIGSPAFP 1208
Query: 807 STIW 810
S W
Sbjct: 1209 SEDW 1212
>gi|170042657|ref|XP_001849034.1| rothmund-thomson syndrome DNA helicase recq4 [Culex quinquefasciatus]
gi|167866161|gb|EDS29544.1| rothmund-thomson syndrome DNA helicase recq4 [Culex quinquefasciatus]
Length = 1527
Score = 315 bits (806), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 223/690 (32%), Positives = 346/690 (50%), Gaps = 80/690 (11%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLVA 252
+G+ +FR GQ A+ VL ST++ L TG+GKSLCYQ+PA +L +TLV+ PLV+
Sbjct: 822 FGHANFRAGQERAVMRVLCGMSTLVTLSTGSGKSLCYQLPAYLLRKRQNCVTLVISPLVS 881
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FLS 308
LM DQ+ +P ++ L ++Q P+ T+ I G + VL +SPE ++ + F S
Sbjct: 882 LMEDQVHGVPNFLNAQCLHTNQTPKVRERTMAAITAGELDVLLISPEAVVSGEKSTGFGS 941
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+ I+ +DEAHCVS+WSHNFRPSY+ + +L+ +L V+ IL +TATAT T
Sbjct: 942 LLKQLPPIAFACIDEAHCVSQWSHNFRPSYLMI-CRVLKEKLGVKTILGLTATATVQTRV 1000
Query: 369 DVMSALEIP--LSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
++ L IP + +I L DNL L+VS N R A + + R + I+
Sbjct: 1001 SIVEHLGIPDGTNGIISDIPLPDNLNLTVSRDAN-----RDAALLNLLQSERFADLRSII 1055
Query: 427 QISGKHFETDLISRYL--CDNSISVKS--------------------YHSGIPAKDRSRI 464
+ E + IS +L C +S YH+G+P+ R I
Sbjct: 1056 VYCTRRDECERISGFLRTCFQDAQRESEAKEGAASKKRKRVNYTAEPYHAGMPSSRRRTI 1115
Query: 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
Q F S ++R+VVAT+AFGMG++K D+ A+IHY++P + E YVQE+GRAGRDG+ S+CH+
Sbjct: 1116 QNAFMSGELRIVVATIAFGMGINKSDIRAIIHYNMPRNFESYVQEVGRAGRDGKPSHCHV 1175
Query: 525 FLDDITYFR--LRSLMYSDGVDEYAINKFLCQVF------TNGMNSHGKLCS-----LVK 571
FLD+ R LR +Y++ +D + I K L ++F N N + C
Sbjct: 1176 FLDNKGGDRNELRRHIYANSIDRHVIRKLLQKIFVPCACANNFKNKQQRTCPGHEMCFSI 1235
Query: 572 ESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTL-LADKD---- 626
ES ++ DI EE + TL+ LEL E +Y+Q+L C ++ + + L A KD
Sbjct: 1236 ESTVQQLDIPEENIATLMCYLELHEERYIQVLSRAYTMCKVSSYAGSRALRTAAKDCPPL 1295
Query: 627 -KMVATILKKSETKQGQYVFDIPT--VANSIGATTIDVSNQLLNL--------KMRGEIT 675
+A LK+ + + P VA +IG + V QL NL + R I+
Sbjct: 1296 AMAIALDLKRGISHDSSTFIEFPVIDVAAAIGWDSGVVKFQLKNLEWTVENNVRKRSPIS 1355
Query: 676 YELKDPAYCYTIVEVPSDFC--ALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKT 733
D + + P D L L + V + +L ++ + V +T
Sbjct: 1356 VTFSDLGF---RLRAPGDLNDDELDKTLDSLFARVTGQEKAQLVQLQSISDALSSVAFQT 1412
Query: 734 H-GCNGSLHTPC----LQKNILDYFRGDDNCDV---PNKIGQSSPFLRADIKVFLQSNLN 785
+ G++ T L++ + YF+ D + DV P L +DI+ +
Sbjct: 1413 YLAAGGTVGTEGPSQKLKQIVRTYFQSDLDVDVELVPEPDDTPDTQLLSDIRTMIHRYPE 1472
Query: 786 AKFTPRAVARILHGIASPAYPSTIWSKTHF 815
F+ RA+AR+ HG+ SP YP+ IW +++F
Sbjct: 1473 NNFSGRAIARVFHGVQSPNYPAVIWGRSNF 1502
>gi|340373231|ref|XP_003385145.1| PREDICTED: ATP-dependent DNA helicase Q4-like [Amphimedon
queenslandica]
Length = 1050
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 207/661 (31%), Positives = 350/661 (52%), Gaps = 63/661 (9%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP----GLTLVVCPLVAL 253
GY SF GQ EAI+ VL ST+LVLPTG GKSLCYQ+PA + LV+ PL++L
Sbjct: 385 GYGSFMPGQQEAIRHVLSGNSTLLVLPTGGGKSLCYQLPAYMYTRQSLCFVLVISPLISL 444
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT-- 311
M DQ+++LP + G + +S E+ + ++ G I +LFV+PE ++ F SI T
Sbjct: 445 MNDQVKNLPCGLSGVCIHNSLSHEQKQQIFADLEAGLINILFVAPEALISGSFSSIQTLL 504
Query: 312 -ATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+ L I+ V +DE HC+SEW HNFR +Y+RL +L+ +L V+CIL +TATA TT+
Sbjct: 505 YSNRLPPIAFVCIDEVHCLSEWGHNFRSAYLRL-PKILKKQLGVQCILGLTATANKTTIS 563
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQ-----------NERSAYVDEVFSFH 417
+ +L+I ++I + + +NL +SVS + Q N ++ +
Sbjct: 564 HITESLQIKAEHVIVGSAIPENLHISVSCETDRLQALLDLLQSAPFNNCNSIIIYCTRQQ 623
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
+ K +++IS + +D+ ++ ++ ++YH+G+ R RIQ F + K+R+VV
Sbjct: 624 TTEKVAQLVRISTEQNYSDIKNKSSIKQNMIAEAYHAGLSMGARKRIQSNFMNGKLRIVV 683
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD----DITYFR 533
ATVAFGMGL+K DV AVIHY++P+ E +VQEIGRAGRDG +YCH+F++ D+
Sbjct: 684 ATVAFGMGLNKSDVRAVIHYNMPKGFESFVQEIGRAGRDGNAAYCHIFIEKNGNDLR--E 741
Query: 534 LRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLE 593
L+ ++ +GVD +++ K Q+F+ ++ +L + ++ D EE + TLL LE
Sbjct: 742 LQRHIHGNGVDYFSVKKLCQQIFSFSEKDEYEV-ALSIDELTKTLDANEETISTLLCYLE 800
Query: 594 LGEIQYLQLLPELKVTCTLNFH--KTTPTLLADKDKMVATILKKSETKQ---GQYVFDIP 648
++++ L T T+ + + +LADK +++ + +K + +K Q F +
Sbjct: 801 --NDNWIEVYSPLYDTVTIKCYGPQLNIAVLADKFQVIESAVKHNISKSCTTNQLSFSLT 858
Query: 649 TVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSD-----FCALSAHLTK 703
VAN + + ++++ L + M + E + ++ +++ S+ C
Sbjct: 859 EVANDMKSNSMELLQGLQS--MGNNVIVESSNLSFYARVLKATSNEDKDCICQ------D 910
Query: 704 WLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPN 763
LS+++ + + L R+ F+ + + C + + I YF + +
Sbjct: 911 MLSKIQKKERKDLHRLQQ---FSSVLMLMSQDCTSKVF---FKDIIAVYFNAGLSSEYLR 964
Query: 764 KIGQSSPF---------LRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTH 814
+G +P L DI V + + +FT RA+AR+ HGI SP YP+ +W
Sbjct: 965 SLGIEAPLHFNTTSDEILIRDIHVLMGMYPDNQFTGRAIARVFHGIGSPCYPADVWGSCP 1024
Query: 815 F 815
F
Sbjct: 1025 F 1025
>gi|321475032|gb|EFX85996.1| DNA helicase RecQ4 [Daphnia pulex]
Length = 1253
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 229/690 (33%), Positives = 351/690 (50%), Gaps = 89/690 (12%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLVA 252
+G+ SFR GQ E + +L KST++V TGAGKSLCYQ+PA+I +T+VV PLV+
Sbjct: 553 FGHSSFRPGQEEVVMRILSGKSTLVVQSTGAGKSLCYQLPAVIYAQRSTCVTIVVSPLVS 612
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT- 311
LM DQ+ +LP + L S Q + ++L+Q GAI++L +S E + + T
Sbjct: 613 LMEDQVSNLPSFVKAICLHSGQSEGVRQKNLQLLQSGAIQILLLSAEAVTSTGPFGLITL 672
Query: 312 -ATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
T L I+ V VDEAHCVS+WSHNFRPSY+R+ +LR ++N++ IL +TATA +TLR
Sbjct: 673 LRTCLPPIAFVCVDEAHCVSQWSHNFRPSYLRI-CKVLRDKMNIQTILGLTATAPKSTLR 731
Query: 369 DVMSALEIPLSN-LIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+ L + N +I+ L NL LSVS R +R A + ++ R + I+
Sbjct: 732 SIADNLGVDNENGVIRGVLLPSNLYLSVS-----RDKDRDAALIQLLEGSRFANFDAIII 786
Query: 428 ISGKHFETD----LISRYLCDN---------------SISVKSYHSGIPAKDRSRIQELF 468
+ E + L+ YL D S S ++YH+G+ A RS +Q+ F
Sbjct: 787 YCIRREECERLATLLRTYLKDPVKDLESKGGGRRRGISWSAEAYHAGLTAARRSSVQKQF 846
Query: 469 CSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL-- 526
+ K+++VVATVAFGMG++K D+ A+IHY+ P++ E YVQEIGRAGRDG ++CH+FL
Sbjct: 847 MTGKMKIVVATVAFGMGINKSDIRAIIHYNAPKNFENYVQEIGRAGRDGLPAHCHVFLNS 906
Query: 527 DDITYFRLRSLMYSDGVDEYAINKFL---------CQVFTNGMNSHGKLCSLVKESASRK 577
+ L+ +Y++ D + + K + C+ G ++V ES ++
Sbjct: 907 EGRDLQELKRFIYANSTDRHVLRKLMRKILPEPCDCRKEDGSGECKGHEVAMVIESTIQE 966
Query: 578 FDIKEEVMLTLLTCLELGEIQY-LQLLPELKVTCTLNFH----------KTTPTLLADKD 626
D+ EE + TLL LE ++ L++ ++ CT+ + + P L A
Sbjct: 967 LDMPEENIATLLCHLESHPSRWVLEVGSKVYAACTVRCYGGLLQLKMAARECPALGA--- 1023
Query: 627 KMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYT 686
A L+K+++ F + VA IG + V QL +L+ P
Sbjct: 1024 ---ALALQKADST-AVRTFAVVDVARRIGWESGAVKRQLKSLEWDRSAVAIGGKPRRSGI 1079
Query: 687 IVEVPSDFCALSAHLTKWLSEVEN----------------CKVRKLDRMFHAAVFAVDVC 730
+VE SD A H+ LSE E ++++L R+ H A+ ++
Sbjct: 1080 LVEF-SDL-AFHLHVRGDLSEAEQDAALEFIHQRCMNREATEIQQLQRI-HQALLSISHS 1136
Query: 731 EKTHGCNGSLHTPC--LQKNILDYFRGDDNCDVPNKIGQSSP-----FLRADIKVFLQSN 783
+ T C T L+ I DYF + P + P F+RA I+ + +
Sbjct: 1137 QSTSCCETVDETKSDKLRSFIKDYFEEEAGACQPVEEVVLCPDNQEQFIRATIRSLILNY 1196
Query: 784 LNAKFTPRAVARILHGIASPAYPSTIWSKT 813
+ FT R++ARILHGI+SP YP+ IW K
Sbjct: 1197 RDQTFTARSIARILHGISSPCYPAEIWGKA 1226
>gi|170068621|ref|XP_001868938.1| rothmund-thomson syndrome DNA helicase recq4 [Culex quinquefasciatus]
gi|167864601|gb|EDS27984.1| rothmund-thomson syndrome DNA helicase recq4 [Culex quinquefasciatus]
Length = 1093
Score = 301 bits (772), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 228/748 (30%), Positives = 361/748 (48%), Gaps = 120/748 (16%)
Query: 179 AVRDEASDENLGRLLRLV--YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIP 236
V + + DE++G + + +G+ +FR GQ A+ VL ST++ L TG+GKSLCYQ+P
Sbjct: 330 GVVENSEDESVGGVFDALKQFGHANFRAGQERAVMRVLCGMSTLVTLSTGSGKSLCYQLP 389
Query: 237 AMILPG----LTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIK 292
A +L +TLV+ PLV+LM DQ+ +P ++ L ++Q P+ T+ I G +
Sbjct: 390 AYLLRKRQNCVTLVISPLVSLMEDQVHGVPNFLNAQCLHTNQTPKVRERTMAAITAGELD 449
Query: 293 VLFVSPERFLNAD----FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRA 348
VL +SPE ++ + F S+ I+ +DEAHCVS+WSHNFRPSY+ + +L+
Sbjct: 450 VLLISPEAVVSGEKSTGFGSLLKQLPPIAFACIDEAHCVSQWSHNFRPSYLMI-CRVLKE 508
Query: 349 RLNVECILAMTATATTTTLRDVMSALEIP--LSNLIQKAQLRDNLQLSVSLSGNNRQNER 406
+L V+ IL +TATAT T ++ L IP + +I L DNL L+VS N R
Sbjct: 509 KLGVKTILGLTATATVQTRVSIVEHLGIPDGTNGIISDIPLPDNLNLTVSRDAN-----R 563
Query: 407 SAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYL--CDNSISVKS------------- 451
A + + R + I+ + E + IS +L C +S
Sbjct: 564 DAALLHLLQSDRFADLRSIIVYCTRRDECERISGFLRTCFQDAQRESEAKEGAASKKRKR 623
Query: 452 -------YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLE 504
YH+G+P+ R IQ F S ++R+VVAT+AFGMG++K D+ A+IHY++P + E
Sbjct: 624 VNYTAEPYHAGMPSSRRRTIQNAFMSGELRIVVATIAFGMGINKSDIRAIIHYNMPRNFE 683
Query: 505 EYVQEIGRAGRDGRLSYCHLFLDDITYFR--LRSLMYSDGVDEYAINKFLCQVF------ 556
YVQE+GRAGRDG+ S+CH+FLD+ R LR +Y++ +D + I K L ++F
Sbjct: 684 SYVQEVGRAGRDGKPSHCHVFLDNRGGDRNELRRHIYANSIDRHVIRKLLQKIFVPCACA 743
Query: 557 ------------------------TNGMN-SHGKLCSLVK------------------ES 573
T+ N S G+ ++ K E+
Sbjct: 744 NNFKNKEFSEEHRKEIEALKDISWTDDFNDSMGEPSTIAKPKVRQQRTCPGHEVCFSIEA 803
Query: 574 ASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTL-LADKD-----K 627
++ DI EE + TL+ LEL E +Y+Q+L C ++ + + L A KD
Sbjct: 804 TVQQLDIPEENIATLMCYLELHEERYIQVLSRAYTMCKVSSYAGSRALRTAAKDCPPLAM 863
Query: 628 MVATILKKSETKQGQYVFDIPT--VANSIGATTIDVSNQLLNLKM--------RGEITYE 677
+A LK+ + + P VA +IG + V QL NL+ R I+
Sbjct: 864 AIALDLKRGISHDSSTFIEFPVIDVAAAIGWDSGVVKFQLKNLEWTVENNVRKRSPISVT 923
Query: 678 LKDPAYCYTIVEVPSDFC--ALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTH- 734
D + + P D L L + V + +L ++ + V +T+
Sbjct: 924 FSDLGF---RLRAPGDLNDDELDKTLDSLFARVTGQEKAQLVQLQSISDALSSVAFQTYL 980
Query: 735 GCNGSLHTPC----LQKNILDYFRGDDNCD---VPNKIGQSSPFLRADIKVFLQSNLNAK 787
G++ T L++ + YF+ D + D VP L +DI+ +
Sbjct: 981 AAGGTVGTEGPSQKLKQIVRTYFQSDLDVDVELVPEPDDTPDTQLLSDIRTMIHRYPENN 1040
Query: 788 FTPRAVARILHGIASPAYPSTIWSKTHF 815
F+ RA+AR+ HG+ SP YP+ IW +++F
Sbjct: 1041 FSGRAIARVFHGVQSPNYPAVIWGRSNF 1068
>gi|301773388|ref|XP_002922129.1| PREDICTED: ATP-dependent DNA helicase Q4-like [Ailuropoda
melanoleuca]
Length = 1190
Score = 301 bits (772), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 221/712 (31%), Positives = 336/712 (47%), Gaps = 112/712 (15%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ + +L ST+LVLPTGAGKSLCYQ+PA++ P LTLV+ PL++L
Sbjct: 465 GHQAFRPGQERVVMRILSGMSTLLVLPTGAGKSLCYQLPALLYARRSPCLTLVISPLLSL 524
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD--FLSIFT 311
M DQ+ LPP + + S ++ ++ +Q + VL +SPE + A
Sbjct: 525 MDDQMSGLPPCLKAACIHSGMTRKQQESALKKVQAAQVHVLMLSPEALVGAGAGIPGRLP 584
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
++ VDEAHC+S+WSHNFRP Y+R+ +LR + V C L +TATAT +T RDV
Sbjct: 585 QLPPVAFACVDEAHCLSQWSHNFRPCYLRV-CKVLREHMGVHCFLGLTATATRSTARDVA 643
Query: 372 SALEIPLSNLIQKAQ--LRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF---HRS 419
L + L+ + + NL LSVS+ + Q ++R + V +
Sbjct: 644 QHLGV-AEELVLRGPVTIPTNLYLSVSMDRDPDQALVTLLQSDRFRALSSVIVYCNRRED 702
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
++ L + DL R +++ ++YH+G+ +++R R+Q+ F ++RVVVAT
Sbjct: 703 TERVAALLRTCLREARDLGRRGQAPKAVA-EAYHAGMCSRERRRVQQAFMDGRLRVVVAT 761
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSL 537
VAFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL LR
Sbjct: 762 VAFGMGLDRPDVRAVLHLGLPASFESYVQAVGRAGRDGQPAHCHLFLQPQGQDLQELRRH 821
Query: 538 MYSDGVDEYAINKFLCQVFT-------------NGMNSHGKLCSLVKESASRK------- 577
+++D D A+ K + F +G S + ++ A +
Sbjct: 822 VHADATDFLAVKKLVQCSFPPCTCTHAQRPLEQDGAESQERPVAVSPREAKQPNSERTAR 881
Query: 578 ----------------FDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTL 621
D+ EE + TLL LEL ++L+LL C L P L
Sbjct: 882 CPGHERALPVQPLVQALDMPEEAIETLLCYLELHPQRWLELLAPTYAHCRLRCPGGPPQL 941
Query: 622 --LADKDKMVATILKKS---ETKQGQYV--FDIPTVANSIGATTIDVSNQLLNLKMRGE- 673
LA + ++A L + T G Y FD+P +A+S+G V L L+ E
Sbjct: 942 QALAHRSPLLALCLAQQPLESTGGGSYSVEFDVPKLADSVGWKLASVRQALRQLQWEPEP 1001
Query: 674 ---------ITYELKDPAYCYTIVEVPSDFCA---------LSAHLTKWLSEVENCKVRK 715
+ E ++ A+C + P D A L +H+ E ++R+
Sbjct: 1002 GTGAPRETGVLVEFRELAFC---LHSPGDLTAPERDQICDFLYSHIRAREQEA-LARLRR 1057
Query: 716 LDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQ-----KNILD-YFR-------GDDNCDVP 762
+ FH+ F C L P + K +L YF GD+ P
Sbjct: 1058 TFQAFHSVAFP--------SCGPCLEQPDEERSARLKTLLSCYFEEEGPGRVGDEQGPEP 1109
Query: 763 NKIG--QSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
+ G +R D++ L S + +F+ RAVARI HGI SP YP+ ++ +
Sbjct: 1110 GQTGIQDWEDQVRQDVRHLLSSWPDQQFSGRAVARIFHGIGSPRYPAQVYGR 1161
>gi|307206664|gb|EFN84636.1| ATP-dependent DNA helicase Q4 [Harpegnathos saltator]
Length = 1553
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 225/709 (31%), Positives = 363/709 (51%), Gaps = 115/709 (16%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVC 248
LRL +G++SFR GQ +A+ VL +ST++ L TG+GKSLCYQ+PA + +TLV+
Sbjct: 850 LRL-FGHESFRAGQEKAVMRVLSGRSTLVTLSTGSGKSLCYQLPAYLYSQHSRCITLVIS 908
Query: 249 PLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD--- 305
PLV+LM DQ+ +P + L + Q P+ + ++ ++ G + +L VSPE + +
Sbjct: 909 PLVSLMDDQVTGVPLFLSAACLHTGQSPKVREQVMQAVKDGKVNILLVSPEAVVAGEKST 968
Query: 306 -FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
F ++ I+ +DEAHC+S+WSHNFRPSY+ L +L+ +L V+ +L +TATAT
Sbjct: 969 GFGALLRQLPPIAFACIDEAHCISQWSHNFRPSYLML-CRVLKEKLGVKTVLGLTATATR 1027
Query: 365 TTLRDVMSALEIP--LSNLIQKAQLRDNLQLSVSLSGNNR-------QNERSAYVDEVFS 415
T +++ L++P ++ +I + NL L+VS GN ++ER D V
Sbjct: 1028 ATAESIVNHLDLPDGMAGVISDVPMPRNLVLTVSKDGNKDHGLIALLRSERFQECDSVIV 1087
Query: 416 FHRSSKHYYILQISGKHFETDLISRYLCDNSISVK----------SYHSGIPAKDRSRIQ 465
+ ++ +I+G L+ L D+ S K +YH+G+ A R +Q
Sbjct: 1088 Y--CTRREECARIAG------LLRVSLQDSRNSEKPNAKMSTIAEAYHAGMTALRRKVVQ 1139
Query: 466 ELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ F S KI++VVATVAFGMG++K ++ AVIHY++P + E YVQE+GRAGRDG ++CHLF
Sbjct: 1140 KEFMSGKIKIVVATVAFGMGINKANIRAVIHYNMPSTFESYVQEVGRAGRDGLPAHCHLF 1199
Query: 526 L---DDITYFRLRSLMYSDGVDEYAINKFLCQVF-----------TNGMNSHGKLCSLVK 571
L +D + LR ++++G+D + I L ++F +G G +L
Sbjct: 1200 LNPMEDSDKWELRRHIHANGIDRHTIRHLLQRIFIPCSCAKINAKDSGRRCPGHEVALSI 1259
Query: 572 ESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH----------KTTPTL 621
+ + DI EE++ TLL LEL +++ +L + V ++ + +++P L
Sbjct: 1260 DETVQALDITEEIISTLLCYLELHPRKFITVLSSVYVRARISSYNGPQALKQAAQSSPPL 1319
Query: 622 LADKDKMVATILKKSETKQGQYVFDIPT--VANSIGATTIDVSNQLLNLKMRGEITYELK 679
+A ++K T + V + P VA++IG + V + L +L+ ++K
Sbjct: 1320 AM----AIALDMQKRITHEDSNVIEFPVIDVASAIGWDSGVVKSHLKDLEWAAGADGKMK 1375
Query: 680 DPAYCYTI------VEVPSDFC------ALSAHLTKWLSEVENCKVRKLDRMFHA----- 722
A V+ P D AL A + + S+ +C +R+L+ + A
Sbjct: 1376 RSAISVHYDKLGLRVKAPGDLSDVELDEALDALIARTRSQESSC-LRQLEIISSALSRIS 1434
Query: 723 -------AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGD---DNCD------VPNKIG 766
V DV +K+ L+ I YF+ D DN D VPN+
Sbjct: 1435 VSSIKYCLVLDEDVAKKSEE---------LKDTIRKYFQSDSPLDNVDISFQDKVPNEHQ 1485
Query: 767 QSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
+ AD++ + + KFT RAVARI HGI SP YP+ IW + F
Sbjct: 1486 -----IAADVRSLVLCYRDTKFTGRAVARIFHGIQSPNYPAMIWGRCRF 1529
>gi|302851189|ref|XP_002957119.1| hypothetical protein VOLCADRAFT_98196 [Volvox carteri f. nagariensis]
gi|300257526|gb|EFJ41773.1| hypothetical protein VOLCADRAFT_98196 [Volvox carteri f. nagariensis]
Length = 1852
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 253/445 (56%), Gaps = 33/445 (7%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
SD+ L +LR V+G+ FR QLE ++ VL+ S + VLPTGAGKSL YQ+PA++LPG+T
Sbjct: 1180 SDDQLAAMLRAVWGHSGFRGRQLELVRAVLEGTSMLAVLPTGAGKSLTYQLPAILLPGVT 1239
Query: 245 LVVCPLVALMIDQLRHLPPVIHG--GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
LVV PL+ALM DQL +LP V+ G LS Q E+V + G++K+L+V+PE+ L
Sbjct: 1240 LVVSPLLALMDDQLANLPRVLQGRGASLSGGQTREQVDAALSAATRGSVKLLYVAPEKLL 1299
Query: 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
L+ ISL+ VDEAHCVSEW H+FRP+Y+RL +LR L C+L +TATA
Sbjct: 1300 TPWLLAALRRLR-ISLIAVDEAHCVSEWGHSFRPAYLRL-GHVLRRVLQPRCVLGLTATA 1357
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
TT T +V + L + ++++ LR NL+L V L +E A + RS +
Sbjct: 1358 TTPTAGEVAAVLGLAPEAVMREPPLRQNLRLKV-LHMQPGASESGASRTALLQLLRSQEL 1416
Query: 423 YYILQI---SGKHFETDLISRYL-CDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
+ + ++ D ++ +L + IS SYH+G P DR+ + F + + RVVVA
Sbjct: 1417 AAVQSVLVYVAMQWQADEVAGWLQSTHGISASSYHAGRPLPDRNAVATSFRTGRTRVVVA 1476
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
TVAFGMG+D +GAV+H +P SLE+YVQ+ GRAGRDGR + C+LFLDD Y R RSL+
Sbjct: 1477 TVAFGMGVDHPSIGAVVHLQMPRSLEDYVQQAGRAGRDGREARCYLFLDDQDYQRYRSLV 1536
Query: 539 YSDGVDEYAINKFLCQVFT------------------------NGMNSHGKLCSLVKESA 574
YS + A+ FL +VF NG S L +
Sbjct: 1537 YSGCTELSAVEAFLTRVFAPQPLLPPSPPELPYKHHNDPDHHHNGGGSTSSFGVLQLSTT 1596
Query: 575 SRKFDIKEEVMLTLLTCLELGEIQY 599
+ + DI EE + L LG++ +
Sbjct: 1597 ASELDIGEEALRQLSQLAALGQVHF 1621
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 782 SNLNAKFTPRAVARILHGIASPAYPSTIWSKTH 814
+ ++ TP AVARILHG+A PA+P+ W K H
Sbjct: 1728 AAMSMSLTPVAVARILHGLAGPAFPTDSWRKAH 1760
>gi|428174232|gb|EKX43129.1| RecQL4 DNA/RNA helicase, partial [Guillardia theta CCMP2712]
Length = 355
Score = 298 bits (764), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 162/355 (45%), Positives = 222/355 (62%), Gaps = 12/355 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+ F +GQ ++ VL +ST+ V TG GKSLC+Q+P+ L G LV+ PL++
Sbjct: 6 LQNVFGHSQFLEGQETVLQRVLAGESTLFVSATGGGKSLCFQLPSCHLKGSILVISPLLS 65
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312
L+ DQL H+P + L+S+Q EE + ++ G I +LF++PER + FLS+ +
Sbjct: 66 LIQDQLEHMPGGVAAATLNSTQSYEEYQRVVEGLRAGKIDILFIAPERLMTDSFLSLASF 125
Query: 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMS 372
SL VDEAHC+SEW+HNFRPSY RL L+R L + ILA+TATAT RD+
Sbjct: 126 LPPFSLACVDEAHCLSEWAHNFRPSYSRLNM-LIRQHLKIPTILALTATATKVMERDIRD 184
Query: 373 ALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVD---EVFSFHRSSKHYYILQIS 429
AL IP ++ +R NL LSVS Q++RSA V E F + S Y S
Sbjct: 185 ALSIPEEGTVRVGIVRPNLFLSVS----REQSKRSALVQLLREDKCFSKGSVIVYCQLRS 240
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E + +++ L + +S YH+G P KDR R+Q F K+R+VVATVAFGMG+DKR
Sbjct: 241 ----ECEEVAKLLSYHKLSADFYHAGRPHKDRQRVQNKFFDGKLRIVVATVAFGMGIDKR 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD 544
DV VIH+S P+S+E YVQEIGRAGRDGR ++CHLF D + R +S YSDG++
Sbjct: 297 DVQGVIHFSCPDSIESYVQEIGRAGRDGREAFCHLFYDFDDFERKKSYAYSDGIE 351
>gi|354491074|ref|XP_003507681.1| PREDICTED: ATP-dependent DNA helicase Q4 [Cricetulus griseus]
Length = 1218
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 232/715 (32%), Positives = 343/715 (47%), Gaps = 123/715 (17%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 498 GHQAFRPGQEHAVMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLSL 557
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA---DFLSIF 310
M DQ+ LP + L S ++ ++ ++ + VL VSPE + S+
Sbjct: 558 MDDQVSDLPACLKAARLHSGMTKKQREAVLKKVKAAQVHVLLVSPEALVGCWAKGPASLP 617
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
AT L I+ +DE HC+S+WSHNFRP Y+R+ +LR + V C L +TATAT +T R
Sbjct: 618 QATQLPPIAFACIDEVHCLSQWSHNFRPCYLRV-CKVLREHMGVHCFLGLTATATRSTAR 676
Query: 369 DVMSAL----EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
DV L E+ LS L A + NL LSVS+ ++ Q + + F S
Sbjct: 677 DVAQHLGIAEELELSGL---ATIPANLHLSVSVDRDSDQALVTLLQGDRFCTLDS----- 728
Query: 425 ILQISGKHFETDLISRYL--------------CDNSISVKSYHSGIPAKDRSRIQELFCS 470
I+ + +T+ ++ L C ++YH+G+ +++R R+Q+ F
Sbjct: 729 IIIYCTRRKDTERVAALLRTCLSVVREPRHGGCGPEAIAEAYHAGMCSQERRRVQQAFMQ 788
Query: 471 NKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL---- 526
+RVVVATVAFGMGLD+ DV AV+H LP + E YVQ IGRAGRDG+ ++CHLFL
Sbjct: 789 GHLRVVVATVAFGMGLDRPDVRAVLHMGLPPNFESYVQAIGRAGRDGKPAHCHLFLQPQG 848
Query: 527 DDITYFRLRSLMYSDGVDEYAINKFLCQVFT--------------------NGMNSH--- 563
+D+ + LR ++DG+D A+ K + +VF N H
Sbjct: 849 EDL--WELRRHAHADGIDFLAVKKLVQRVFPSCTCTRRPMSKPMLEEAKEHNSQQIHPVL 906
Query: 564 GKLC-----SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTT 618
G+ C + +S + D+ EE + TLL LEL ++L+LLP C L+ +
Sbjct: 907 GQACLGHKRAFPVQSTVQALDMTEEAIETLLCYLELHPRRWLELLPCTYAHCHLHCPGGS 966
Query: 619 PTL--LADKDKMVATILKK---SETKQGQYV--FDIPTVANSIGATTIDVSNQLLNLKMR 671
L LA + +A L K +T +G FD+ +A+S+G V L L+
Sbjct: 967 AQLQALAHRCPPLAACLAKYPPKDTSRGSSSLDFDMVELADSMGWDLSSVRRALYQLQW- 1025
Query: 672 GEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCE 731
E K A T V V +F L+ HL + K + D ++ V
Sbjct: 1026 ---DQEPKKGAPRGTRVLV--EFSELAFHLHSPGDLTDEEKDQICDFLYSC------VQA 1074
Query: 732 KTHGCNGSLHT--------------PCLQ----------KNILDYF--------RGDDNC 759
+ H LH PCL+ K +L ++ D+
Sbjct: 1075 REHKALAHLHQISMAFRSVAFPSCGPCLEQADEERSNQLKTLLSHYFEEEEEEAVKDEQS 1134
Query: 760 DVPNK--IGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
P + + +R DI+ L +F+ RAVARI HGIASP YP+ ++ +
Sbjct: 1135 PEPGQTELQDWEDHIRRDIRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYGQ 1189
>gi|298715324|emb|CBJ27952.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 2200
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 191/590 (32%), Positives = 304/590 (51%), Gaps = 71/590 (12%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
LR V+G+ +FR+GQ + + ++++LVL TG GKSL YQ+PA++LPG+T+VV PLV+
Sbjct: 1350 LRRVFGHKAFREGQEWGVARAMGGQASLLVLATGTGKSLTYQLPALLLPGITVVVSPLVS 1409
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRP-EEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ +LPP + G LS S EVA T+R ++ G +KVLF+SPE+ + F + +
Sbjct: 1410 LMEDQMANLPPQLPGASLSGSHGGLREVAGTVRDLKAGRVKVLFLSPEKLCSPSFRRLAS 1469
Query: 312 ---ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATTTT 366
A +SL+ VDEAHCVS+WSHNFRPSY+RL +L LR R +LA+TATA+
Sbjct: 1470 TPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPR----GVLALTATASKAV 1525
Query: 367 LRDVMSALEIPLSNLIQKAQL-RDNLQLSV--SLSGNNRQNERSAYVDEVFSFHRSSKHY 423
+ D+ + L IP + ++ R NL + V S S +++++ S + E + S
Sbjct: 1526 VEDICTTLRIPRKDGVKVGSWDRPNLDVRVLRSASDDDKRSSLSRLLQEA-PLDKGSVVV 1584
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
Y+ + + + L + + +YH G+ A R R Q F + RVVVATVAFG
Sbjct: 1585 YVW----RQVTAEAVCALLQGDGHNAVAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFG 1640
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
+G+D RD+ V+H+ +P+S+E YVQEIGRAGRDGR + C L L D + SL +S G+
Sbjct: 1641 LGVDMRDIRGVVHFDMPKSIENYVQEIGRAGRDGRSARCCLLLCDKDFVTHHSLSHSKGL 1700
Query: 544 DEYAINKFLCQVFTNGMNSHGKLCSLVKESAS---------------------------- 575
+ + + + + G L K++ S
Sbjct: 1701 ELVQVRGLMRSIMADA--PQGILGETAKKNPSGPRDQYDDDEDNAAGGGDEAAGLHKALS 1758
Query: 576 -----RKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC----TLNFHKTTPTLLADKD 626
+ D+ EV+ T+L+ LE + LQ L +L ++F K P+LLA+ +
Sbjct: 1759 VVDLESRLDVGGEVVETVLSVLEGEPYRGLQWLLKLHAVMDDHLVVHFRKRRPSLLAEGE 1818
Query: 627 KMVATIL------------KKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEI 674
+ +L K G + +A ++G V +L L+ GE+
Sbjct: 1819 PAIGLLLALGTVEGLPSSGKGYSYGHGSAKISLVRLAEALGWAPTAVVRELRRLQFMGEV 1878
Query: 675 TYELKDPAYCYTIVE--VPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
Y L ++ T+++ P + + L + LS E + +K++ ++ A
Sbjct: 1879 EYSLSQRSFHVTLLKGLSPRELEEVCLDLHRTLSTAEASEAQKVEAVYLA 1928
>gi|328777915|ref|XP_393782.4| PREDICTED: ATP-dependent DNA helicase Q4 [Apis mellifera]
Length = 1505
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 215/697 (30%), Positives = 346/697 (49%), Gaps = 100/697 (14%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLVA 252
+G+ +FR GQ +AI +L +ST++ L TG+GKSLCYQ+PA + +TLV+ PLV+
Sbjct: 807 FGHTTFRHGQEKAIMRILSGQSTLVTLSTGSGKSLCYQLPAYLYSQYSTCITLVISPLVS 866
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FLS 308
LM DQ+ +P + L ++Q + T+++I+ G I +L +SPE + + F +
Sbjct: 867 LMDDQVTGVPSFLSAACLHTNQTQKVRDNTMKMIKQGKINILLISPEAVVAGEKSTGFGA 926
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+ I+ +DEAHC+S+WSHNFRPSY+ + +L+ +L V+ +LA+TATA T
Sbjct: 927 LLRELPPIAFACIDEAHCISQWSHNFRPSYL-MVCRVLKEKLGVKTVLALTATARKATAE 985
Query: 369 DVMSALEIP--LSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+++ L I ++ +I + NL L++S N R + ++ R + I+
Sbjct: 986 SIVNHLGIQDGIAGIISDVPIPKNLLLTISKDEN-----RDQALIKLLQSERFQECNSII 1040
Query: 427 QISGKHFETDLISRYL------------CDNSIS--VKSYHSGIPAKDRSRIQELFCSNK 472
+ E I+ +L +N IS ++YH+G+ A R +Q+ F + +
Sbjct: 1041 IYCTRREECVRIAGFLRISLQNVNNPEKPNNKISFIAEAYHAGLSAHRRKIVQKAFMNGQ 1100
Query: 473 IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL---DDI 529
R+VVATVAFGMG++K D+ AVIHY++P S E Y+QE+GRAGRDG ++CHLFL +D
Sbjct: 1101 TRIVVATVAFGMGINKPDIRAVIHYNMPGSFENYIQEVGRAGRDGLTAHCHLFLNPTEDK 1160
Query: 530 TYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSH-----------GKLCSLVKESASRKF 578
LR +Y++GVD + I + L +VF + S G ++ +
Sbjct: 1161 DKLELRRHIYANGVDRHTIRRLLQKVFLSCSCSKLREKMANNRCPGHEVAIPVDDTVMAL 1220
Query: 579 DIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH----------KTTPTLLADKDKM 628
DI EE++ TLL LEL +++ +L + V ++ + +T+P L
Sbjct: 1221 DISEEIISTLLCYLELHPKKFVSVLSSVYVRARVSSYNGSQGLKQAAQTSPPLAM----A 1276
Query: 629 VATILKKSETKQGQYVFDIPT--VANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYT 686
+A LK + + V + P VA++IG + V + L NL+ ++ + +
Sbjct: 1277 IALDLKNGISHEKDNVIEFPVVDVASAIGWDSGVVKSHLKNLE------WKTVNGIPKRS 1330
Query: 687 IVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKT------------H 734
+ V D L L+E+E LD A V+ V E + H
Sbjct: 1331 TLSVKYDKLGLRVKAPGDLTELE------LDEALDALVYRVQSQESSALQQLETIGVTLH 1384
Query: 735 GCNGSLHTPCLQKN-------------ILDYFRGDDNCDV---PNKIGQSSPFLRADIKV 778
+ S CL N I YF G+ D+ I ++ + DI+
Sbjct: 1385 KFSVSSINECLIMNDNITNNSNRLKDVIRSYFDGEVLLDIDFNKQNIMENEAQIACDIRN 1444
Query: 779 FLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
+ S + FT RAVARI HGI SP YP+ +W+K F
Sbjct: 1445 LIVSYRDNNFTGRAVARIFHGIQSPNYPAYVWNKCRF 1481
>gi|380019761|ref|XP_003693771.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q4-like
[Apis florea]
Length = 1499
Score = 292 bits (748), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 213/694 (30%), Positives = 350/694 (50%), Gaps = 92/694 (13%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLVA 252
+G+ +FR GQ +AI +L +ST++ L TG+GKSLCYQ+PA + +TLV+ PLV+
Sbjct: 799 FGHTTFRHGQEKAIMRILSGQSTLVTLSTGSGKSLCYQLPAYLYSQYSNCITLVISPLVS 858
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FLS 308
LM DQ+ +P + L ++Q + T+++I+ G I +L +SPE + + F +
Sbjct: 859 LMDDQVTGVPSFLSAACLHTNQTQKVRDNTMKMIKQGRINILLISPEAVVAGEKSTGFGA 918
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+ I+ +DEAHC+S+WSHNFRPSY+ + +L+ +L V+ +LA+TATA T
Sbjct: 919 LLRELPPIAFACIDEAHCISQWSHNFRPSYL-MVCRVLKEKLGVKTVLALTATARKATAE 977
Query: 369 DVMSALEIP--LSNLIQKAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSFHRS 419
+++ L I ++ +I + NL L++S N Q +ER + + +
Sbjct: 978 SIVNHLGIQDGIAGVISDIPIPKNLLLTISKDENRDQALIKLLQSERFQECNSIIIY--C 1035
Query: 420 SKHYYILQISG--KHFETDLISRYLCDNSIS--VKSYHSGIPAKDRSRIQELFCSNKIRV 475
++ ++I+G + ++ + +N IS ++YH+G+ A R +Q+ F + + R+
Sbjct: 1036 TRREECVRIAGFLRISLQNVNNSEKPNNKISYIAEAYHAGLSAHRRKIVQKAFMNGQTRI 1095
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL---DDITYF 532
VVATVAFGMG++K D+ AVIHY++P S E Y+QE+GRAGRDG ++CHLFL +D
Sbjct: 1096 VVATVAFGMGINKPDIRAVIHYNMPGSFENYIQEVGRAGRDGFTAHCHLFLNPIEDKDKL 1155
Query: 533 RLRSLMYSDGVDEYAINKFLCQVFTNGMNSH-----------GKLCSLVKESASRKFDIK 581
LR +Y++GVD + I + L +VF + S G ++ + DI
Sbjct: 1156 ELRRHIYANGVDRHTIRRLLQKVFVSCSCSKLREKIANNRCPGHEVAIPVDDTVMALDIS 1215
Query: 582 EEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH----------KTTPTLLADKDKMVAT 631
EE++ TLL LEL +++ +L + V ++ + +T+P L +A
Sbjct: 1216 EEIISTLLCYLELHPKKFVSVLSSVYVRARVSSYNGSQGLKQAAQTSPPLAM----AIAL 1271
Query: 632 ILKKSETKQGQYVFDIPT--VANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVE 689
LK + + V + P VA++IG + V + L NL+ + + + + +
Sbjct: 1272 DLKNGISHEKDNVIEFPVVDVASAIGWDSGVVKSHLKNLEWKTGLFNGIPK----RSTLS 1327
Query: 690 VPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKT------------HGCN 737
V D L L+E+E LD A V+ V E + H +
Sbjct: 1328 VKYDKLGLRVKAPGDLTELE------LDEALDALVYRVQSQESSALQQLETIGVILHKFS 1381
Query: 738 GSLHTPCLQKN-------------ILDYFRGDDNCDV---PNKIGQSSPFLRADIKVFLQ 781
S CL N I YF G+ D+ I ++ + D++ +
Sbjct: 1382 VSSINECLIMNDNIINNSNRLKDVIRSYFDGEVLLDIDFNKQNIMENEAQIACDVRNLIV 1441
Query: 782 SNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
S + FT RAVARI HGI SP YP+ +W+K F
Sbjct: 1442 SYRDNNFTGRAVARIFHGIQSPNYPAYVWNKCRF 1475
>gi|110834022|ref|YP_692881.1| ATP-dependent DNA helicase RecQ [Alcanivorax borkumensis SK2]
gi|110647133|emb|CAL16609.1| ATP-dependent DNA helicase RecQ [Alcanivorax borkumensis SK2]
Length = 636
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 209/636 (32%), Positives = 320/636 (50%), Gaps = 66/636 (10%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ + FR GQ I +L +S + V PTG GKSLCYQ+PA++L G+TLVV PL+A
Sbjct: 8 LQQTFKLQGFRPGQERVINALLAGRSALAVFPTGGGKSLCYQLPALMLDGVTLVVSPLIA 67
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + I L SS E++ R ++ G+IK+L+V+PER N FL+
Sbjct: 68 LMKDQVDQLHRLGIAAARLDSSVDAEQLQSIYRGLEDGSIKLLYVAPERLANERFLARLK 127
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
S IS++ VDEAHCVSEW HNFRP Y++L + L L V +LA+TATAT + +
Sbjct: 128 RLS-ISMMAVDEAHCVSEWGHNFRPDYLKL--AQLAKELEVGRVLALTATATPQVAQQIC 184
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH--YYILQIS 429
+ I ++ +Q R NL LSV ER + E S Y LQ +
Sbjct: 185 DSFAIAPADHVQTGFFRPNLALSVR---PYNVEERGRALLEALQARPSEPAIVYVTLQKT 241
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
++ L + ++ ++YH+G+ ++R R+QE F S ++ +VVAT+AFGMG+DK
Sbjct: 242 ATQ-----VAALLSEQGLNAQAYHAGLKGEERHRVQEAFMSGQVNIVVATIAFGMGIDKA 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYA 547
D+ + HY+LP+SLE Y+QEIGRAGRDG S C L DD+T L + Y D D A
Sbjct: 297 DIRGIYHYNLPKSLENYMQEIGRAGRDGEPSQCVLLASSDDLTV--LENFSYGDTPDSEA 354
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELK 607
+ + + +N + V E S +FD++ V+ TLLT LEL I ++
Sbjct: 355 LAGLIGWL----VNQPAQFDLAVHE-LSGQFDVRPLVINTLLTYLELDGI--IRSTAPFY 407
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKK--SETKQGQYVFDIP--TVANSIGATTIDVSN 663
L F + +LA D A L++ + K+G+ + VA+ + + +
Sbjct: 408 TEYKLAFQISQAEVLAQFDHERADFLRQVFAAGKEGRIWLTLKPIAVADQLQVDRVRILK 467
Query: 664 QLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAA 723
+ L+ +G + + Y +V P+D AL+A + + E +++L ++
Sbjct: 468 AIGYLEQQGMVEVRVAGVRQGYRMVNRPADPQALTAQIAEQFRVREQRDIQRLQQV---- 523
Query: 724 VFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQ---------------- 767
CN + + C Q+ ++ YF G+ +P GQ
Sbjct: 524 ------------CNWAQSSDCYQRGLVGYF-GE---QLPQPCGQCSACKGEHQRFPERHR 567
Query: 768 SSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASP 803
++P + V Q + A TPR +AR L GI+SP
Sbjct: 568 TAPDSAVILAVIAQRH-GALATPRQLARFLCGISSP 602
>gi|73621453|sp|Q75NR7.2|RECQ4_MOUSE RecName: Full=ATP-dependent DNA helicase Q4; AltName: Full=DNA
helicase, RecQ-like type 4; Short=RecQ4; AltName:
Full=RecQ protein-like 4
gi|12964694|dbj|BAB32696.1| RecQ helicase protein-like 4 [Mus musculus]
Length = 1216
Score = 288 bits (738), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 229/709 (32%), Positives = 335/709 (47%), Gaps = 111/709 (15%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
GY +FR GQ AI +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 494 GYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLSL 553
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL---SIF 310
M DQ+ LP + L S ++ ++ ++ + VL VSPE + S+
Sbjct: 554 MDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGARGPGSLP 613
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
A L I+ +DE HC+S+WSHNFRP Y+R+ +LR + V C L +TATAT +T R
Sbjct: 614 QAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRV-CKVLREHMGVRCFLGLTATATRSTAR 672
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF---H 417
DV L I L A + NL LSVS+ ++ Q +R +D V +
Sbjct: 673 DVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVIIYCTRE 732
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
R + L + D R C ++YH+G+ +++R R+Q+ F +R+VV
Sbjct: 733 RIQNGWLALLRTCLSMVGDSRPRG-CGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVV 791
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFR 533
ATVAFGMGLD+ DV AV+H LP S E YVQ IGRAGRDG+ ++CHLF+ +D+ +
Sbjct: 792 ATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLFMHPQGEDL--WE 849
Query: 534 LRSLMYSDGVDEYAINKFLCQVFT--------------------NGMNSH---GKLC--- 567
LR ++D D A+ + + +VF +G ++ G+ C
Sbjct: 850 LRRHAHADSTDFLAVKRLVQRVFPPCTCSQRPVSKSSPEEVKEHSGQQTYPVLGQACLGH 909
Query: 568 --SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTL--LA 623
+L +S + D+ EE + TLL LEL +L+LLP C L+ + L LA
Sbjct: 910 ERALPVQSTVQALDMTEEAIETLLCYLELHPRHWLELLPWTYAQCHLHCLGGSAQLQALA 969
Query: 624 DKDKMVATILKK---SETKQGQ--YVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678
+ +A K +T QG+ F + +A+S+G V L LK E
Sbjct: 970 HRCPPLAACQAKWPPKDTSQGRSSLEFGVVELADSMGWKLASVRQALHQLKW----DPEP 1025
Query: 679 KDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNG 738
K A T V V F L+ HL + K + D +++ V + H
Sbjct: 1026 KKGAAQGTGVLV--KFSELAFHLHSRGDLTDEEKDQICDFLYN------RVQAREHKALA 1077
Query: 739 SLHT--------------PCLQ----------KNILDYF----------RGDDNCDVPN- 763
LH PCL+ K ++ Y+ D P
Sbjct: 1078 HLHQMSKAFRSVAFPSCGPCLEQSNEEHSNQVKTLVSYYFEEEEEEEETMTDTQGPKPGQ 1137
Query: 764 -KIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWS 811
++ +R D++ L +F+ RAVARI HGIASP YP+ ++
Sbjct: 1138 TQLQDWEDQIRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYG 1186
>gi|410988000|ref|XP_004000277.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q4 [Felis
catus]
Length = 1204
Score = 288 bits (737), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 223/707 (31%), Positives = 339/707 (47%), Gaps = 102/707 (14%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLV+ PL++L
Sbjct: 479 GHRAFRPGQEHAVMRILSGISTLLVLPTGAGKSLCYQLPALLYARRSPCLTLVISPLLSL 538
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQ+ LPP + + S +E ++ +Q + VL +SPE + A + +
Sbjct: 539 MDDQVSGLPPCLKAACIHSGMTRKERDSALKKVQAAQVHVLMLSPEALVGAAAGTPGSLP 598
Query: 314 SL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
L ++ VDEAHC+S+WSHNFRP Y+R+ +LR + V C L +TATAT +T RD+
Sbjct: 599 QLPPVAFACVDEAHCLSQWSHNFRPCYLRV-CKVLREHMGVRCFLGLTATATHSTSRDMA 657
Query: 372 SALEIPLSNLIQ-KAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF---HRSS 420
L + ++++ + NL LSVS N Q ++R ++ V + +
Sbjct: 658 QHLGVAEEHVLRGPVTIPTNLYLSVSTDRNPDQALVTLLQSDRFRDLNSVIVYCNRREDT 717
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480
+ L + DL R +++ ++YH+G+ A++R R+Q+ F ++RVVVATV
Sbjct: 718 ERIAALLRTCLCEAWDLGPRGEAPEAVA-EAYHAGMCARERRRVQQAFMEGRLRVVVATV 776
Query: 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFRLRS 536
AFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL D+ LR
Sbjct: 777 AFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQGQDLQ--ELRR 834
Query: 537 LMYSDGVDEYAINKFLCQVFTNGMNSHGK----------------LCSLVKESASRK--- 577
++++ D A+ K + F +H + + E AS K
Sbjct: 835 HVHAEASDFLAVKKLVQCSFPPCTCTHARQPPEQEGAKSQERPVTVSPSEAEQASNKGLA 894
Query: 578 -----------------FDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPT 620
D+ EE + TLL LEL ++L+LL C L P
Sbjct: 895 QCLGHERALPVQPLVQALDMPEEAIETLLCYLELHPRRWLELLAPTYAYCHLRCPGGLPQ 954
Query: 621 L--LADKDKMVATILKKSETK---QGQYV--FDIPTVANSIGATTIDVSNQLLNLKMRGE 673
L LA + +A L + + +G Y FD+ +A+S+G L L+ E
Sbjct: 955 LQALARRCPPLAVWLAQQPQENIGEGSYSVEFDVVKLADSMGWKLAPAKQALRQLQWYPE 1014
Query: 674 ----------ITYELKDPAYCYTIVEVPSDFCALSAH--------LTKWLSEVENCKVRK 715
+ E ++ A+C + P D L+AH L + + E + +
Sbjct: 1015 PRTGALRDTGVLVEFRELAFC---LHSPGD---LTAHEKDQICDFLYERVQTREQEALAR 1068
Query: 716 LDRMFHA-AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFR-------GDDNCDVPN--KI 765
L R F A A C H+ L+ + YF D+ P +I
Sbjct: 1069 LRRTFQAFHSVAFPSCGPCLEQPDEEHSARLKVLLSGYFEEEGPGGMEDEQGPEPGQARI 1128
Query: 766 GQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
+R DI+ L S + +F+ RAVARI HGI SP YP+ ++ +
Sbjct: 1129 QDWEDQIRQDIRHLLSSWPDQQFSGRAVARIFHGIGSPCYPAQVYGR 1175
>gi|307178096|gb|EFN66923.1| ATP-dependent DNA helicase Q4 [Camponotus floridanus]
Length = 1534
Score = 288 bits (737), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 213/696 (30%), Positives = 356/696 (51%), Gaps = 94/696 (13%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLV 251
+G++SFR GQ +AI +L +ST+++L TG+GKSLCYQ+PA + +TLV+ PLV
Sbjct: 833 TFGHESFRTGQEKAIMRILSGQSTLVMLSTGSGKSLCYQLPAYLYSQHFRCITLVISPLV 892
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FL 307
+LM DQ+ +P V+ L ++Q P+ + ++ ++ G + +L VSPE + ++ F
Sbjct: 893 SLMDDQVMGMPKVLSAACLHTNQTPKIREQVMQSVKDGKVNILLVSPEAVVASEKSTGFG 952
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I+ +DE HC+S+WSHNFRPSY+ + +L+ +L V+ IL +TAT T TT
Sbjct: 953 ALLKQLPPIAFACIDEVHCISQWSHNFRPSYL-MVCRVLKEKLRVKTILGLTATVTKTTA 1011
Query: 368 RDVMSALEI--PLSNLIQKAQLRDNLQLSVSLSGNNR-------QNERSAYVDEVFSF-- 416
++ L++ +S +I L NL L+VS N +++R +D + +
Sbjct: 1012 ESIVKHLDLHDGMSGIISDVPLPKNLILTVSKDENKDYALIALLKSDRFRELDCIIVYCI 1071
Query: 417 --HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
+ +L+IS K + S + YH+G+ A R +Q+ F S KI+
Sbjct: 1072 RREECERIAALLRISLKDPRNP--EKPKAKISTIAEVYHAGMTAYKRKIVQKEFMSGKIK 1129
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD---DITY 531
+VVATVAFGMG++K D+ A+IHY++P + E YVQEIGR+GRD ++CHLFL+ +
Sbjct: 1130 IVVATVAFGMGINKSDIRAIIHYNMPGTFEGYVQEIGRSGRDSITAHCHLFLNPTQNSDK 1189
Query: 532 FRLRSLMYSDGVDEYAINKFLCQVF-------TNGMNSH----GKLCSLVKESASRKFDI 580
+ LR ++++GVD Y I L ++F N NS+ G +L + + DI
Sbjct: 1190 WELRRHIHANGVDRYTIRHLLQRIFIPCSCKKINEKNSNWRCPGHEVALPIDEIVKDLDI 1249
Query: 581 KEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH----------KTTPTLLADKDKMVA 630
+E + TLL LEL +++ +L + V ++ + +++P L +A
Sbjct: 1250 TQETISTLLCYLELHPKRFITVLSSVYVRARVSSYNGPQALKQAAQSSPPLAM----AIA 1305
Query: 631 TILKKSETKQGQYV--FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI- 687
++K + + + F + VA++IG + V + L L+ + K A
Sbjct: 1306 LDMQKGISHEDSNIIEFSVINVASAIGWDSGIVKSHLKTLEWTTGADGKTKRSAISVQYD 1365
Query: 688 -----VEVPSDFC------ALSAHLTKWLSEVENCKVRKLDRMFHA------------AV 724
V+ P D AL + + S+ +C +++L+ + A +
Sbjct: 1366 KLGLRVKAPGDLTDTELDEALDTLIARTQSQESSC-LQQLELISFAFDKISVPTIKDCLI 1424
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGD---DNCDV--PNKIGQSSPFLRADIKVF 779
DV +++ L+ I DYF+ D +N D+ +K+ + AD++
Sbjct: 1425 LDDDVMKRSDE---------LKNIIRDYFQSDSPLNNADIGFQDKVTNEEQ-IAADVRNL 1474
Query: 780 LQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
+ + KFT RAVARI HGI SP YP+ IWSK F
Sbjct: 1475 IIRYRDTKFTGRAVARIFHGIQSPNYPALIWSKCRF 1510
>gi|348555961|ref|XP_003463791.1| PREDICTED: ATP-dependent DNA helicase Q4-like [Cavia porcellus]
Length = 1228
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 228/715 (31%), Positives = 335/715 (46%), Gaps = 109/715 (15%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ I +L ST+LVLPTGAGKSLCYQ+PA++ P LTLV+ PL++L
Sbjct: 494 GHKAFRPGQERTIMRILSGISTLLVLPTGAGKSLCYQLPALLYARRSPCLTLVISPLLSL 553
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS---IF 310
M DQL HL P + L S ++ ++ +Q + VL +SPE + A +
Sbjct: 554 MDDQLSHLSPSLKAACLHSGMTRKQRDSVLQKVQAAQVHVLMLSPEALVRAGSGGPGGLL 613
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
A L ++ +DEAHC+S WSHNFRP Y+R+ +LR R+ V C L +TATAT +T R
Sbjct: 614 QAARLPPVAFACIDEAHCLSTWSHNFRPCYLRI-CKVLRERMGVHCFLGLTATATHSTAR 672
Query: 369 DVMSALEIPLSNLIQKAQ-LRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF-HRS 419
DV L I +K + NL LSVS+ N Q +R +D V + +R
Sbjct: 673 DVAHHLGITEELSPRKGSVIPANLHLSVSMDRNPDQALVTLLQGDRFRSLDSVIVYCNRR 732
Query: 420 SKHYYILQISGKHFET--DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
+ + T D +R +++ ++YH+G+ +++R R+Q+ F ++RVVV
Sbjct: 733 EDTLRVAALLRTCLPTVQDPKARGRVPRAVA-EAYHAGMCSQERQRVQQAFMKGQLRVVV 791
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFR 533
ATVAFGMGLD+ DV AV+H LP S E Y+Q +GRAGRDG+ ++CHLFL +D+
Sbjct: 792 ATVAFGMGLDRLDVRAVLHLGLPPSFENYIQGVGRAGRDGQPAHCHLFLQPQGEDLR--E 849
Query: 534 LRSLMYSDGVDEYAINKFLCQVF-------TNGMNS------------------------ 562
LR +Y+DG D + K + VF G NS
Sbjct: 850 LRRHVYADGADFLTMKKLMQCVFPPCTCTRQEGGNSGVRSAVEPPPQEAKQHGGCPAAFG 909
Query: 563 HGKLC-----SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKT 617
G+ C +L + + D+ EE + TLL LEL L+LLP C L
Sbjct: 910 QGRACRGHERALPIQPIVQALDMPEEAIETLLCYLELHPQHCLELLPPTYTHCRLYCPGG 969
Query: 618 TPTL--LADKDKMVATILKK---SETKQG--QYVFDIPTVANSIGATTIDVSNQLLNLKM 670
T L LA + +A + T+QG F++ + +S+G V L L+
Sbjct: 970 TDQLQALAQRCPPIAACCARWPPKNTRQGSCSMEFNVVELVDSMGWELPPVQQALYQLQW 1029
Query: 671 R-----------------GEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKV 713
GE+ + L+ P E C + +
Sbjct: 1030 DQEPRTGVLRSTGVLVEFGELAFHLRSPG--DLTAEERDQVCDFLYSCVQTRERKALAHL 1087
Query: 714 RKLDRMFHAAVF-AVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNC------DVPNK-- 764
R + + FH+ F + C + H S L+ + YF ++ DV NK
Sbjct: 1088 RHMFQAFHSVAFPSCGPCLEQHDKERSAQ---LKALLSQYFEEEEEEEEEEEGDVKNKQS 1144
Query: 765 --IGQSS-----PFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
GQ+ +R DI+ L +F+ RAVARI HGI SP YP+ ++ +
Sbjct: 1145 PEPGQAQLQDWEDQVRHDIRQLLSLWPEERFSGRAVARIFHGIGSPCYPAQVYGQ 1199
>gi|110815828|ref|NP_478121.2| ATP-dependent DNA helicase Q4 [Mus musculus]
gi|46092353|dbj|BAD14289.1| RecQ helicase protein-like 4 [Mus musculus]
gi|148697661|gb|EDL29608.1| RecQ protein-like 4, isoform CRA_b [Mus musculus]
gi|189442089|gb|AAI67215.1| RecQ protein-like 4 [synthetic construct]
Length = 1216
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 228/709 (32%), Positives = 336/709 (47%), Gaps = 111/709 (15%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
GY +FR GQ AI +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 494 GYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLSL 553
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL---SIF 310
M DQ+ LP + L S ++ ++ ++ + VL VSPE + S+
Sbjct: 554 MDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGARGPGSLP 613
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
A L I+ +DE HC+S+WSHNFRP Y+R+ +LR + V C L +TATAT +T R
Sbjct: 614 QAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRV-CKVLREHMGVRCFLGLTATATRSTAR 672
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF---H 417
DV L I L A + NL LSVS+ ++ Q +R +D V +
Sbjct: 673 DVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVIIYCTRR 732
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
+ ++ L + D R C ++YH+G+ +++R R+Q+ F +R+VV
Sbjct: 733 KDTERVAALLRTCLSMVGDSRPRG-CGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVV 791
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFR 533
ATVAFGMGLD+ DV AV+H LP S E YVQ IGRAGRDG+ ++CHLF+ +D+ +
Sbjct: 792 ATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLFMHPQGEDL--WE 849
Query: 534 LRSLMYSDGVDEYAINKFLCQVFT--------------------NGMNSH---GKLC--- 567
LR ++D D A+ + + +VF +G ++ G+ C
Sbjct: 850 LRRHAHADSTDFLAVKRLVQRVFPPCTCSQRPVSKSSPEEVKEHSGQQTYPVLGQACLGH 909
Query: 568 --SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTL--LA 623
+L +S + D+ EE + TLL LEL +L+LLP C L+ + L LA
Sbjct: 910 ERALPVQSTVQALDMTEEAIETLLCYLELHPRHWLELLPWTYAQCHLHCLGGSAQLQALA 969
Query: 624 DKDKMVATILKK---SETKQGQ--YVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678
+ +A K +T QG+ F + +A+S+G V L LK E
Sbjct: 970 HRCPPLAACQAKWPPKDTSQGRSSLEFGVVELADSMGWKLASVRQALHQLKW----DPEP 1025
Query: 679 KDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNG 738
K A T V V F L+ HL + K + D +++ V + H
Sbjct: 1026 KKGAAQGTGVLV--KFSELAFHLHSRGDLTDEEKDQICDFLYN------RVQAREHKALA 1077
Query: 739 SLHT--------------PCLQ----------KNILDYF----------RGDDNCDVPN- 763
LH PCL+ K ++ Y+ D P
Sbjct: 1078 HLHQMSKAFRSVAFPSCGPCLEQSNEEHSNQVKTLVSYYFEEEEEEEETMTDTQGPKPGQ 1137
Query: 764 -KIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWS 811
++ +R D++ L +F+ RAVARI HGIASP YP+ ++
Sbjct: 1138 TQLQDWEDQIRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYG 1186
>gi|156358666|ref|XP_001624637.1| predicted protein [Nematostella vectensis]
gi|156211429|gb|EDO32537.1| predicted protein [Nematostella vectensis]
Length = 714
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 222/693 (32%), Positives = 343/693 (49%), Gaps = 102/693 (14%)
Query: 213 VLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVIHGG 268
+L S+++VL TGAGKSLCYQ+PA + P LTLV+ PLV+LM DQ+ LP + G
Sbjct: 3 ILSGMSSLVVLSTGAGKSLCYQLPAYMYHKRSPCLTLVISPLVSLMEDQITGLPFGLKGA 62
Query: 269 FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF-----LSIFTATSLISLVVVDE 323
L ++Q + + + I G + VL VSPE + L T I+ +DE
Sbjct: 63 CLHNNQTKPQRLKILTDITAGKVAVLLVSPEALVGGGMGGSGCLPSSTKMPPIAFACIDE 122
Query: 324 AHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSN-LI 382
AHC+SEWSHNFRPSY+R+ +LR R V+C L +TATAT +T V L I + +I
Sbjct: 123 AHCLSEWSHNFRPSYLRV-CKILRDRYGVQCFLGLTATATQSTADSVAQHLGIADAGAVI 181
Query: 383 QKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYL 442
+ A + NL+LSVS R ++ + E+ R S+ I+ + T+ ++ +
Sbjct: 182 RGAAVPPNLRLSVS-----RDRDKDKALIELLQGPRFSRCESIIIYCTRREVTERVATLI 236
Query: 443 --C----------DNSIS---VKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
C D+ IS +SYH+G+ A R ++Q+ F S ++R V ATVAFGMGLD
Sbjct: 237 RTCMQHMQPTIRHDDVISGSDAESYHAGMSAAQRRKVQKRFMSGELRAVAATVAFGMGLD 296
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRSLMYSDGVDE 545
K DV A+IHY++P+S E YVQEIGRAGRDG+ S+CH+FLD LR ++S+ VD
Sbjct: 297 KSDVRAIIHYNMPKSFESYVQEIGRAGRDGKPSHCHVFLDREGQDLCELRRHIFSNTVDR 356
Query: 546 YAINKFLCQVF------------------TNGMN--SHGKLCSLVKESASRKFDIKEEVM 585
+ + + ++F T N G ++V E+A + D++EE +
Sbjct: 357 VTVKRLVNRIFPRCDCKKLQREQSKPNVETKQPNRVCGGHEVAIVTETAVEELDMREESI 416
Query: 586 LTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKM----VATILKKSETKQG 641
TLL LEL +++++L +K CT+ F+ + A ++ A + S TK+
Sbjct: 417 ATLLCYLELHGNRWVEVLSTVKSMCTIKFYGGYAHMKAVAKRIPPIAAALLQSGSSTKKQ 476
Query: 642 QYV-FDIPTVANSIGATTIDVSNQL-----------------------------LNLKMR 671
Y+ F + +A+ +G VS++L L+L++R
Sbjct: 477 NYLKFSVVQLADKMGWDLEPVSSELRALQWNSSLAPTSDMGSTGQSGILVEFSDLSLRVR 536
Query: 672 --GEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCK----VRKLDRMFHAAVF 725
G++T E +D + + ++ LT S ++ V+ +D M A
Sbjct: 537 APGDLTDEERDQVVDFLDDRIQAEERTQLEQLTTLYSSLKGVSCGGIVQCMDEMDEDADV 596
Query: 726 AVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFL------RADIKVF 779
+ K + + T +K + D +N D ++S L DI+
Sbjct: 597 ELKTIIKKYFDD---RTNATEKALRDIQERRNNPDAYAPKPENSDDLVNWDCVSRDIRTL 653
Query: 780 LQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
L + + FT RAVARI HGI SP YP+ +W +
Sbjct: 654 LGIHHDHSFTGRAVARIFHGIDSPCYPAAVWGR 686
>gi|126153389|gb|AAI31657.1| Recql4 protein [Mus musculus]
Length = 1214
Score = 285 bits (730), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 227/709 (32%), Positives = 335/709 (47%), Gaps = 111/709 (15%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
GY +FR GQ AI +L ST+LVLPTGAGKS+CYQ+PA++ P LTLVV PL++L
Sbjct: 492 GYRAFRPGQERAIMRILSGISTLLVLPTGAGKSMCYQLPALLYAQRSPCLTLVVSPLLSL 551
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL---SIF 310
M DQ+ LP + L S ++ ++ ++ + VL VSPE + S+
Sbjct: 552 MDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGARGPGSLP 611
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
A L I+ +DE HC+S+WSHNFRP Y+R+ +LR + V C L +TATAT +T R
Sbjct: 612 QAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRV-CKVLREHMGVRCFLGLTATATRSTAR 670
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF---H 417
DV L I L A + NL LSVS+ ++ Q +R +D V +
Sbjct: 671 DVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVIIYCTRR 730
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
+ ++ L + D R C ++YH+G+ +++R R+Q+ F +R+VV
Sbjct: 731 KDTERVAALLRTCLSMVGDSRPRG-CGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVV 789
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFR 533
ATVAFGMGLD+ DV AV+H LP S E YVQ IGRAGRDG+ ++CHLF+ +D+ +
Sbjct: 790 ATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLFMHPQGEDL--WE 847
Query: 534 LRSLMYSDGVDEYAINKFLCQVFT--------------------NGMNSH---GKLC--- 567
LR ++D D A+ + + VF +G ++ G+ C
Sbjct: 848 LRRHAHADSTDFLAVKRLVQCVFPPCTCSQRPVSKSSPEEVKEHSGQQTYPVLGQACLGH 907
Query: 568 --SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTL--LA 623
+L +S + D+ EE + TLL LEL +L+LLP C L+ + L LA
Sbjct: 908 ERALPVQSTVQALDMTEEAIETLLCYLELHPRHWLELLPWTYAQCHLHCLGGSAQLQALA 967
Query: 624 DKDKMVATILKK---SETKQGQ--YVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678
+ +A K +T QG+ F + +A+S+G V L LK E
Sbjct: 968 HRCPPLAACQAKWPPKDTSQGRSSLEFGVVELADSMGWKLASVRQALHQLKW----DPEP 1023
Query: 679 KDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNG 738
K A T V V F L+ HL + K + D +++ V + H
Sbjct: 1024 KKGAAQGTGVLV--KFSELAFHLHSRGDLTDEEKDQICDFLYN------RVQAREHKALA 1075
Query: 739 SLHT--------------PCLQ----------KNILDYF----------RGDDNCDVPN- 763
LH PCL+ K ++ Y+ D P
Sbjct: 1076 HLHQMSKAFRSVAFPSCGPCLEQSNEEHSNQVKTLVSYYFEEEEEEEETMTDTQGPKPGQ 1135
Query: 764 -KIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWS 811
++ +R D++ L +F+ RAVARI HGIASP YP+ ++
Sbjct: 1136 TQLQDWEDQIRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYG 1184
>gi|431908159|gb|ELK11762.1| ATP-dependent DNA helicase Q4 [Pteropus alecto]
Length = 983
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 238/783 (30%), Positives = 363/783 (46%), Gaps = 117/783 (14%)
Query: 133 GNFVRLNLNNNK--RKFANKG----KRNKSFRGKLSYRRTASELELVEEAVRAVRDEASD 186
GN+VRLN+ + R A +G K+ + +G+ T LE V + + + S+
Sbjct: 186 GNYVRLNMKWKRYVRGPALRGHLLRKQKEDGKGEDGVH-TLPTLEEVAQRMGTAYSQLSE 244
Query: 187 ---ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--- 240
E L +L G+ +FR GQ A+ VL ST+LVLPTGAGKSLCYQ+PA++
Sbjct: 245 TPAEVFQALKQL--GHQAFRPGQERAVMQVLSGMSTLLVLPTGAGKSLCYQLPALLYARR 302
Query: 241 -PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
P LTLV+ PL++LM DQ+ LPP + + S ++ ++ + + VL +SPE
Sbjct: 303 SPCLTLVISPLLSLMDDQVSGLPPGLKAACVHSGMNRKQRNSALQKARAAQVHVLMLSPE 362
Query: 300 RFLNADFLSIFTATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILA 357
+ A L ++ +DEAHC+S+WSHNFRP Y+R+ +LR L V C L
Sbjct: 363 ALVGAGAGGPACLAQLPPVAFACIDEAHCLSQWSHNFRPCYLRI-CKVLREHLGVCCFLG 421
Query: 358 MTATATTTTLRDVMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSF 416
+TATAT +T DV L + ++++ + NL LSVS+ + Q + + F F
Sbjct: 422 LTATATHSTALDVAQHLGVAKEHVLRGPVIIPPNLYLSVSMDRDPDQALVTLLQSDRFRF 481
Query: 417 HRSSKHYYILQISGKHFETDLISRYL--CDNSISV------------KSYHSGIPAKDRS 462
S ++ + +T+ +S L C ++YH+G+ ++ R
Sbjct: 482 LDS-----VIIYCNRREDTERVSALLRTCLREAWAPGPRGRVLEAVAEAYHAGMCSRARQ 536
Query: 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
R+Q+ F ++RVVVATVAFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++C
Sbjct: 537 RVQQAFMEGRLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHC 596
Query: 523 HLFL----DDITYFRLRSLMYSDGVDEYAINKFLCQVFT--------------------- 557
HLFL +D+ + LR ++++ D A+ K + + F
Sbjct: 597 HLFLQPQGEDL--WELRRHVHANATDFLAVKKLVQRAFPPCACPRQLSGQEGGESQDKHS 654
Query: 558 -------------NGMNSHGKLC-----SLVKESASRKFDIKEEVMLTLLTCLELGEIQY 599
N H C +L + + D+ EEV+ TLL LEL +
Sbjct: 655 ASAFVTESRREDKQPGNEHTVRCPGHKRALPVQPTVQALDLPEEVIETLLCYLELHPQHW 714
Query: 600 LQLLPELKVTCTLNFHKTTPTL--LADKDKMVATILKKSETKQ-GQ----YVFDIPTVAN 652
L+LL C L+ L LA + +A L K +Q G+ FD+ + +
Sbjct: 715 LELLAPTHARCHLHCPGGPTQLHALARRCPPLAVYLAKQPPEQMGRGSCAVEFDVVELVD 774
Query: 653 SIGATTIDVSNQLLNLKMRGE----------ITYELKDPAYCYTIVEVPSDFCA-----L 697
S+G V L L+ E +T E ++ A + P D +
Sbjct: 775 SMGWALGPVRQALRQLQWDPEARTGVPRGTGVTVEFRELAL---HLHSPGDLTVQEKDQI 831
Query: 698 SAHLTKWLSEVENCKVRKLDRMFHA-AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFR-- 754
L + E + L+R F A A+ C H+ L+ + YF
Sbjct: 832 CDFLYGRVQAREREALACLNRTFQAFRSMALPNCGPFLEQPDEEHSARLKALLSQYFEED 891
Query: 755 -----GDDNCDVPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTI 809
GD+ P + +R DI+ FL S +F+ RAVARI HGI SP YP+ +
Sbjct: 892 GLGGSGDEQGPEPEQARDWEVQIRRDIRHFLSSWPEQQFSGRAVARIFHGIGSPCYPAQV 951
Query: 810 WSK 812
+ +
Sbjct: 952 YGR 954
>gi|148229208|ref|NP_001091506.1| ATP-dependent DNA helicase Q4 [Bos taurus]
gi|146186517|gb|AAI40467.1| RECQL4 protein [Bos taurus]
gi|296480755|tpg|DAA22870.1| TPA: RecQ protein-like 4 [Bos taurus]
Length = 1218
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 218/723 (30%), Positives = 338/723 (46%), Gaps = 132/723 (18%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +F GQ + VL ST+LVLPTGAGKSLCYQ+PA++ P LTLV+ PL +L
Sbjct: 491 GHHAFYPGQERVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYFRRSPCLTLVISPLTSL 550
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQL LPP + G + S ++ ++ + ++VL +SPE + A ++ +
Sbjct: 551 MDDQLSGLPPGLKGACIHSGMTKKQRDSALQKARAARVQVLMLSPEALVGAGASTLLSQL 610
Query: 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSA 373
++ +DEAHC+S+WSHNFRP Y+R+ LR ++ V C L +TATAT +T DV
Sbjct: 611 PPVAFACLDEAHCLSQWSHNFRPCYLRV-CQTLRDQMGVHCFLGLTATATRSTALDVAWH 669
Query: 374 LEIPLSNLIQ-KAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF-HRSSKHYY 424
L + ++++ A + DNL LSVS + Q ++R + V + HR
Sbjct: 670 LGVTEESVLRGPATIPDNLHLSVSSDRDPDQALVTLLRSDRFRALGSVIIYCHRREDTER 729
Query: 425 ILQISGKHFETDLISRYLCDNS----------ISVKSYHSGIPAKDRSRIQELFCSNKIR 474
+ L+ LCD ++YH+G+ +++R R+Q F ++R
Sbjct: 730 V---------AALLRTCLCDAQDPGPHGRALEAVAEAYHAGLCSRERRRVQRAFMEGRLR 780
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYF 532
+VVATVAFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL
Sbjct: 781 MVVATVAFGMGLDRPDVRAVLHLGLPPSFETYVQAVGRAGRDGQPAHCHLFLRPQGQDLR 840
Query: 533 RLRSLMYSDGVDEYAINKFLCQVFT--------------------------------NGM 560
LR ++++ VD +A+ + + +VF +G
Sbjct: 841 ELRRHVHANAVDFFAVKRLVQRVFPPCACARQPPEQEGSRSEEGHLAGAPVAASAQDSGQ 900
Query: 561 NS--HGKLCS-----LVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLN 613
S H C L + + D+ EE + TLL LEL ++L+LL C L
Sbjct: 901 PSVPHTPRCPGHERVLPVQPTVQALDMPEEAIETLLCYLELHPRRWLKLLAPTYARCHLR 960
Query: 614 FHKTTPTL--LADKDKMVATILKKS--ETKQG--QYVFDIPTVANSIGATTIDVSNQLLN 667
+ L LA + +A L + +TKQG D+ +A+S G V LL
Sbjct: 961 WPGGPTQLQALARRCPPLALCLAQQHPDTKQGCSSVELDLVELADSTGWELGPVRRALLQ 1020
Query: 668 LKMRGE----------ITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLD 717
L+ E + E ++ A+ + P D L+A + + + +V+ +
Sbjct: 1021 LQWDPEPGTGVPQGTGVLVEFRETAF---RLHSPGD---LTAQERDQICDFLHSRVQARE 1074
Query: 718 R-----------MFHAAVFAVDVCEKTHGCNGSLHTPCLQKN------ILDYFR------ 754
R FH+ F C L P +++ + YF
Sbjct: 1075 REALANLHHTFQAFHSVAFP--------SCGPCLEQPAWERSSRLKALLSHYFEEESEQP 1126
Query: 755 -GDDNCDVP----NKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTI 809
G + D P +++ +R DI+ L S +F+ RAVAR+ HGI SP YP+ +
Sbjct: 1127 GGLETEDDPELGQDRLQDWEDQIRRDIRQLLSSWPEQRFSGRAVARVFHGIGSPCYPAQV 1186
Query: 810 WSK 812
+ +
Sbjct: 1187 FGR 1189
>gi|328722517|ref|XP_001944049.2| PREDICTED: ATP-dependent DNA helicase Q4-like [Acyrthosiphon pisum]
Length = 1217
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 218/700 (31%), Positives = 341/700 (48%), Gaps = 118/700 (16%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLV 251
++G+ FR GQ +AI +L ST++ L TG+GKSLCYQ+PA + +TLV+ PL+
Sbjct: 530 LFGHTKFRPGQEKAIMRILSGLSTLVTLSTGSGKSLCYQLPAYLFSKKSKCITLVISPLI 589
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL---NADFLS 308
+LM DQ+ + V + L +SQ P+E + + G + +L +SPE + N D+L
Sbjct: 590 SLMEDQVGGISAV-NIACLHNSQTPKERDIIMEKLANGELSILLLSPEAVVSGFNTDWLL 648
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
I+ V +DEAHC+S+WSHNFRPSY+ + +LR + V+ L +TATAT +T+
Sbjct: 649 KLPP---IAFVCLDEAHCLSQWSHNFRPSYLMI-CQVLREKFGVKTFLGLTATATISTVS 704
Query: 369 DVMSALEIP--LSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+ S L + +++I+ L DNL LSVS R +R + + + R I+
Sbjct: 705 SIASELMLDDDPNSIIKDTPLPDNLMLSVS-----RDKDRDKALINLLNGDRFKHCSSII 759
Query: 427 QISGKHFETDLISRYLCDN--------------SISVKSYHSGIPAKDRSRIQELFCSNK 472
+ E + I+ ++ S + YH+G+ A R R Q+ F +
Sbjct: 760 VYCIRREECERIASFIRTTFQSQHTSNGKRGQLSQIAEPYHAGLTAAKRKRTQKYFMDGQ 819
Query: 473 IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD----D 528
+++VVATVAFGMG++K D+ +IHY++ +SLE YVQEIGRAGRDG +++CHLFL+ D
Sbjct: 820 LKIVVATVAFGMGINKADLQGIIHYNMAKSLESYVQEIGRAGRDGNVAHCHLFLESEGND 879
Query: 529 ITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCS-----LVKESASRKFDIKEE 583
I L +YS+ VD +I K L +VF K C+ E D+K+E
Sbjct: 880 IA--ELSRHIYSNSVDRASIRKLLERVFVE-CKCKEKECTKHEVVFEVEDTVSALDMKQE 936
Query: 584 VMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKM-----VATILK-KSE 637
+ TLL LEL + ++ LP + C + +K P L K VA LK SE
Sbjct: 937 NIQTLLCYLELNTKKLVKNLPLSYICCKITSYKG-PLFLKKLSKTCPPLAVAYALKGSSE 995
Query: 638 TKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMR-------------------------G 672
Q F I VA++IG + V +L NL+ G
Sbjct: 996 KPSNQLEFSIFKVASAIGWDSGIVKKELKNLEWSNTNGKFHKSGVAVEFSNLGFRVLAPG 1055
Query: 673 EITYELKDPAYCYTIVEVPSDFCALSAHL-TKWLSEVENCKVRKLDRMFHAAV------- 724
+ E D C + C++S TK LSE++NC D ++
Sbjct: 1056 NMDAEQLDSTLC--------NLCSISQQQETKSLSELQNC----FDTFMRSSTSTSIECC 1103
Query: 725 --FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQS-------SPFLRAD 775
+++CEK L+ ++ +YF D+ + K + + +D
Sbjct: 1104 DEINIELCEK------------LKNSVREYFTVDNLSMLIQKPHEEIVLNETDETRIASD 1151
Query: 776 IKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
+ + ++ K T RA+ARI HG+ SP +P+ +W ++ F
Sbjct: 1152 VNRIFNNYIDCKLTARAIARIFHGVESPNFPAYVWGRSPF 1191
>gi|119602477|gb|EAW82071.1| RecQ protein-like 4, isoform CRA_b [Homo sapiens]
Length = 1208
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 229/737 (31%), Positives = 329/737 (44%), Gaps = 156/737 (21%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 477 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSL 536
Query: 254 MIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
M DQ+ LPP IH G ++ QR E V + IR QV VL ++PE + A L
Sbjct: 537 MDDQVSGLPPCLKAACIHSG-MTRKQR-ESVLQKIRAAQV---HVLMLTPEALVGAGGLP 591
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
++ +DEAHC+S+WSHNFRP Y+R+ +LR R+ V C L +TATAT T
Sbjct: 592 PAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRV-CKVLRERMGVHCFLGLTATATRRTAS 650
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVS------------LSGNNRQN--------ERS 407
DV L + +L A + NL LSVS L G QN R
Sbjct: 651 DVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRR 710
Query: 408 AYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ + + R+ H + SG + ++YH+G+ +++R R+Q
Sbjct: 711 EDTERIAALLRTCLHAAWVPGSGGRA-----------PKTTAEAYHAGMCSRERRRVQRA 759
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F ++RVVVATVAFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL
Sbjct: 760 FMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQ 819
Query: 527 ---DDITYFRLRSLMYSDGVDEYAINKFLCQVFT-------------------------- 557
+D+ LR +++D D A+ + + +VF
Sbjct: 820 PQGEDLR--ELRRHVHADSTDFLAVKRLVQRVFPACTCTCTRPPSEQEGAVGGERPVPKY 877
Query: 558 ----------NGMNSHGKLC-----SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQL 602
++C +L + + D+ EE + TLL LEL +L+L
Sbjct: 878 PPQEAEQLSHQAAPGPRRVCMGHERALPIQLTVQALDMPEEAIETLLCYLELHPHHWLEL 937
Query: 603 LPELKVTCTLNFHKTTPTL--LADKDKMVATILKKS---ETKQG--QYVFDIPTVANSIG 655
L C LN L LA + +A L + + QG FD+ + +S+G
Sbjct: 938 LATTYTHCRLNCPGGPAQLQALAHRCPPLAVCLAQQLPEDPGQGSSSVEFDMVKLVDSMG 997
Query: 656 ATTIDVSNQLLNLKM---------RG--------EITYELKDPAYCYTIVEVPSDFCALS 698
V L L+ RG E+ + L+ P E C
Sbjct: 998 WELASVRQALCQLQWDHEPRTGVRRGTGVLVEFSELAFHLRSPG--DLTAEEKDQICDFL 1055
Query: 699 AHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQ----------KN 748
+ ++R+ + FH+ F C PCL+ K+
Sbjct: 1056 YGRVQARERQALARLRRTFQAFHSVAFP--------SCG-----PCLEQQDEERSTRLKD 1102
Query: 749 ILD-YF----------RGDDNCDVPN--KIGQSSPFLRADIKVFLQSNLNAKFTPRAVAR 795
+L YF D P ++ +R DI+ FL KF+ RAVAR
Sbjct: 1103 LLGRYFEEEEGQEPGGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSSRAVAR 1162
Query: 796 ILHGIASPAYPSTIWSK 812
I HGI SP YP+ ++ +
Sbjct: 1163 IFHGIGSPCYPAQVYGQ 1179
>gi|284005309|ref|NP_004251.3| ATP-dependent DNA helicase Q4 [Homo sapiens]
gi|18206225|sp|O94761.1|RECQ4_HUMAN RecName: Full=ATP-dependent DNA helicase Q4; AltName: Full=DNA
helicase, RecQ-like type 4; Short=RecQ4; AltName:
Full=RTS; AltName: Full=RecQ protein-like 4
gi|4191810|dbj|BAA74453.1| DNA helicase [Homo sapiens]
gi|6440969|dbj|BAA86899.1| RECQL4 helicase [Homo sapiens]
gi|73808276|gb|AAZ85145.1| RecQ protein-like 4 [Homo sapiens]
Length = 1208
Score = 281 bits (720), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 229/737 (31%), Positives = 329/737 (44%), Gaps = 156/737 (21%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 477 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSL 536
Query: 254 MIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
M DQ+ LPP IH G ++ QR E V + IR QV VL ++PE + A L
Sbjct: 537 MDDQVSGLPPCLKAACIHSG-MTRKQR-ESVLQKIRAAQV---HVLMLTPEALVGAGGLP 591
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
++ +DEAHC+S+WSHNFRP Y+R+ +LR R+ V C L +TATAT T
Sbjct: 592 PAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRV-CKVLRERMGVHCFLGLTATATRRTAS 650
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVS------------LSGNNRQN--------ERS 407
DV L + +L A + NL LSVS L G QN R
Sbjct: 651 DVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRR 710
Query: 408 AYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ + + R+ H + SG + ++YH+G+ +++R R+Q
Sbjct: 711 EDTERIAALLRTCLHAAWVPGSGGRA-----------PKTTAEAYHAGMCSRERRRVQRA 759
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F ++RVVVATVAFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL
Sbjct: 760 FMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQ 819
Query: 527 ---DDITYFRLRSLMYSDGVDEYAINKFLCQVFT-------------------------- 557
+D+ LR +++D D A+ + + +VF
Sbjct: 820 PQGEDLR--ELRRHVHADSTDFLAVKRLVQRVFPACTCTCTRPPSEQEGAVGGERPVPKY 877
Query: 558 ----------NGMNSHGKLC-----SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQL 602
++C +L + + D+ EE + TLL LEL +L+L
Sbjct: 878 PPQEAEQLSHQAAPGPRRVCMGHERALPIQLTVQALDMPEEAIETLLCYLELHPHHWLEL 937
Query: 603 LPELKVTCTLNFHKTTPTL--LADKDKMVATILKKS---ETKQG--QYVFDIPTVANSIG 655
L C LN L LA + +A L + + QG FD+ + +S+G
Sbjct: 938 LATTYTHCRLNCPGGPAQLQALAHRCPPLAVCLAQQLPEDPGQGSSSVEFDMVKLVDSMG 997
Query: 656 ATTIDVSNQLLNLKM---------RG--------EITYELKDPAYCYTIVEVPSDFCALS 698
V L L+ RG E+ + L+ P E C
Sbjct: 998 WELASVRRALCQLQWDHEPRTGVRRGTGVLVEFSELAFHLRSPG--DLTAEEKDQICDFL 1055
Query: 699 AHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQ----------KN 748
+ ++R+ + FH+ F C PCL+ K+
Sbjct: 1056 YGRVQARERQALARLRRTFQAFHSVAFP--------SCG-----PCLEQQDEERSTRLKD 1102
Query: 749 ILD-YF----------RGDDNCDVPN--KIGQSSPFLRADIKVFLQSNLNAKFTPRAVAR 795
+L YF D P ++ +R DI+ FL KF+ RAVAR
Sbjct: 1103 LLGRYFEEEEGQEPGGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSSRAVAR 1162
Query: 796 ILHGIASPAYPSTIWSK 812
I HGI SP YP+ ++ +
Sbjct: 1163 IFHGIGSPCYPAQVYGQ 1179
>gi|449671068|ref|XP_002167906.2| PREDICTED: ATP-dependent DNA helicase Q4-like [Hydra magnipapillata]
Length = 1087
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 230/711 (32%), Positives = 346/711 (48%), Gaps = 109/711 (15%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLV 251
V+G++SFR GQ EAI ++ ST+++L TG+GKSLCYQ+PA + LT+VV PLV
Sbjct: 358 VFGFESFRVGQHEAIARIVSGLSTLVILSTGSGKSLCYQLPAFLYYKQKKYLTIVVSPLV 417
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS--I 309
ALM DQ+ LPP + G L+SS + I ++ G I VL +SPE ++ F S +
Sbjct: 418 ALMQDQVASLPPFLPGACLNSSMTKLQQKRVIEKVKNGKIAVLLISPETLVSGGFGSGIL 477
Query: 310 FTATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
+ +SL I+ +DEAHC+SEWSHNFRPSY+++ +LR R N+ +L +TATA+ T
Sbjct: 478 PSKSSLPPIAFACIDEAHCLSEWSHNFRPSYLKV-CKVLRERYNISNLLGITATASHATA 536
Query: 368 RDVMSALEIPLSNLIQKAQLRD------NLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
VM LEIPL I +RD NL ++ S R R + E+
Sbjct: 537 ISVMQHLEIPLEGSI----IRDPHPIPPNLHITAS-----RDCNRDEALTELLQMKPFLS 587
Query: 422 HYYILQISGKHFETDLISRYL--------CDNSI---------SVKSYHSGIPAKDRSRI 464
I+ + + D ++ L D ++ +++SYH+G+ R ++
Sbjct: 588 CDSIIIYVTRRTDADRLASMLRTSLPAKHTDENVKNAKKPFWWNIESYHAGLKPSQRRQV 647
Query: 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
Q F S +R+VVATVAFGMGLDK DV AVIHY++P S E YVQEIGRAGRDG+ SY H+
Sbjct: 648 QINFMSGDLRIVVATVAFGMGLDKSDVRAVIHYNMPSSFENYVQEIGRAGRDGKPSYVHV 707
Query: 525 FLDDI--TYFRLRSLMYSDGVDEYAINKF------------LCQVFTN-------GMNSH 563
FLDD + LR +Y + VD I KF L +V TN +
Sbjct: 708 FLDDDGNDLYELRRHIYGNTVDRSTIQKFVDIAFPPCKCEELYKVNTNVCIEARLKSDIK 767
Query: 564 GKLCSLVK-----ESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTT 618
K+CS + +S + D+ E + TL+ LEL ++L++ L+ C++ +
Sbjct: 768 KKVCSGHRVTFNIDSTVQALDMPEVNIATLMAYLELHPKRWLKVFNPLRDWCSVKCYGGP 827
Query: 619 P--TLLADKDKMVATILKKSETKQGQYV-------FDIPTVANSIGATTIDVSNQL--LN 667
LLA + +A +K Q + + F +A+ + + VS ++ L
Sbjct: 828 EQFQLLAKRFAPIALAIKSLPKDQLRNINEMRSIDFSFAEIADQMCWDVLTVSREVRYLQ 887
Query: 668 LKMRGEITYELKDPAYCYTIVEVPS-DFCALSA-------------HLTKWLSEVENCKV 713
M + L IVE F L+A +L + + E +V
Sbjct: 888 WNMSFALDAPLNTTGNSGVIVECDQLSFHILTASGLSNADKDEICDYLHESTTRQEEQRV 947
Query: 714 RKLDRMFHAAVFAVDVCEKTHGCNGSLHTPC-LQKNILDYF-----------RGDDNCDV 761
+LD +++ +F E + + + +I DYF + +CD+
Sbjct: 948 LQLDALYN--LFRDLSEENYYELKSDIRVDSKARSSISDYFLCSAEQQLAILKEMCSCDL 1005
Query: 762 PNKI-GQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWS 811
K + + +DI L + + FT RA+ARI GI SP YP+ WS
Sbjct: 1006 KVKTSNRRWNAISSDISSLLCAYPDQNFTGRAIARIFQGIDSPCYPA--WS 1054
>gi|194473630|ref|NP_001123966.1| ATP-dependent DNA helicase Q4 [Rattus norvegicus]
gi|149066070|gb|EDM15943.1| RecQ protein-like 4 (predicted) [Rattus norvegicus]
Length = 1216
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 225/716 (31%), Positives = 334/716 (46%), Gaps = 123/716 (17%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 494 GHHTFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYAKRSPCLTLVVSPLLSL 553
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF---LSIF 310
M DQ+ LP + L S ++ ++ ++ + VL VSPE + ++
Sbjct: 554 MDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGAKGPANLP 613
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
A L ++ +DE HC+S+WSHNFRP Y+R+ +LR + V C L +TATAT +T R
Sbjct: 614 PAAQLPPVAFACIDEVHCLSQWSHNFRPCYLRV-CKVLREHMGVRCFLGLTATATRSTAR 672
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
DV L I + A + NL LSVS+ ++ Q + + F S I+
Sbjct: 673 DVAQHLGIAEELEVSGSASIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDS-----III 727
Query: 428 ISGKHFETDLISRYL--CDNSIS------------VKSYHSGIPAKDRSRIQELFCSNKI 473
+ +T+ ++ L C +++ ++YH+G+ +++R R+Q+ F +
Sbjct: 728 YCARRKDTERVAALLRTCLSTVRDSKPRGRGPETLAEAYHAGMCSQERKRVQQAFMQGHL 787
Query: 474 RVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDI 529
R+VVATVAFGMGLD+ DV AV+H LP S E YVQ IGRAGRDG+ ++CHLFL +D+
Sbjct: 788 RMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLFLHPQGEDL 847
Query: 530 TYFRLRSLMYSDGVDEYAINKFLCQVFTN--------------------------GMNSH 563
+ L +++D D A+ K + +VF G+
Sbjct: 848 --WELSRHVHADSTDFLAVKKLVQRVFPACSCAQRPMSPLEEVKEHSGQQTYPVLGLACR 905
Query: 564 GKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTL-- 621
G +L +S D+KEE + TLL LEL +L+LLP C L + L
Sbjct: 906 GHKRALPVQSTVLALDMKEEAIETLLCYLELHPRHWLELLPYTYAHCHLRCPGGSAQLQA 965
Query: 622 LADKDKMVATILKK---SETKQGQYV--FDIPTVANSIGATTIDVSNQLLNLKMRGEITY 676
L + +A K +T QG FD+ +A+S+G V L LK E
Sbjct: 966 LVHRCPPLAACWAKWPPKDTSQGSSALEFDVVELADSMGWELASVRQALHQLKWDPEP-- 1023
Query: 677 ELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGC 736
+ P +VE F L+ HL + K + D ++ V + H
Sbjct: 1024 KKGAPQGTGVLVE----FSELAFHLHSRGDLTDEEKDQICDFLY------SRVQAREHKA 1073
Query: 737 NGSLHT--------------PCLQ----------KNILDYF-----------RGDDNCDV 761
LH PCL+ K ++ Y+ D D
Sbjct: 1074 LAHLHQMSKAFQSVAFPSCGPCLEQSDEGHSNRVKTLVSYYFEEEEEEEEEETMKDTQD- 1132
Query: 762 PNKIGQSS-----PFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
K GQ+ +R D+ L KF+ RAVARI HGIASP YP+ ++ +
Sbjct: 1133 -PKPGQTQLQDWEDQVRRDVHQLLSLRPEEKFSGRAVARIFHGIASPCYPAQVFGQ 1187
>gi|426361068|ref|XP_004047747.1| PREDICTED: ATP-dependent DNA helicase Q4 [Gorilla gorilla gorilla]
Length = 1210
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 227/739 (30%), Positives = 328/739 (44%), Gaps = 158/739 (21%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 477 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYTRRSPCLTLVVSPLLSL 536
Query: 254 MIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
M DQ+ LPP IH G ++ QR E V + IR QV VL ++PE + A L
Sbjct: 537 MDDQVSGLPPCLKAACIHSG-MTRKQR-ESVLQKIRAAQV---HVLMLTPEALVGAGGLP 591
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
++ +DEAHC+S+WSHNFRP Y+R+ +LR R+ V C L +TATAT T
Sbjct: 592 PAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRV-CKVLRERMGVHCFLGLTATATRRTAS 650
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQN--------------------ERS 407
DV L + +L A + NL LSVS+ + Q R
Sbjct: 651 DVAQHLAVAEGPDLHGPAPVPANLHLSVSMDRDTDQALLTLLQGKRFRNLDSIIIYCNRR 710
Query: 408 AYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ + + R+ H + SG H + ++YH+G+ ++R R+Q
Sbjct: 711 EDTERIAALLRTCLHAARVPGSGGHAP-----------KTTAEAYHAGMCIRERRRVQRA 759
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F ++RVVVATVAFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL
Sbjct: 760 FMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQ 819
Query: 527 ---DDITYFRLRSLMYSDGVDEYAINKFLCQVFT-------------------------- 557
+D+ LR +++D D A+ + + +VF
Sbjct: 820 PQGEDLR--ELRRHVHADSTDFLAVKRLVQRVFPACTCTCTRPPSEQEGAVGGERPVPKY 877
Query: 558 ----------NGMNSHGKLC-----SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQL 602
++C +L + + D+ EE + TLL LEL +L+L
Sbjct: 878 PPQEAEQLGHQAAPGPRRVCMGHERALPIQLTVQALDMPEEAIETLLCYLELHPHHWLEL 937
Query: 603 LPELKVTCTLNFHKTTPTL--LADKDKMVATILKK---SETKQG--QYVFDIPTVANSIG 655
L C LN L LA + +A L + + QG FD+ + +S+G
Sbjct: 938 LATTYTHCRLNCPGGPAQLQALAHRCPPLAVCLAQRLPEDPGQGSSSVEFDMVKLVDSMG 997
Query: 656 ATTIDVSNQLLNLKM---------RG--------EITYELKDPAYCYTIVEVPSDFCALS 698
V L L+ RG E+ + L+ P E C
Sbjct: 998 WELASVRRALCQLQWDHEPRTGVRRGTGVLVEFSELAFHLRSPG--DLTAEEKDQICDFL 1055
Query: 699 AHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQ----------KN 748
+ ++R+ + FH+ F C PCL+ K+
Sbjct: 1056 YGRVQARERQALARLRRTFQAFHSVAFP--------SCR-----PCLEQQDEERSTKLKD 1102
Query: 749 ILD-YFRG------------DDNCDVPN--KIGQSSPFLRADIKVFLQSNLNAKFTPRAV 793
+L YF D P ++ +R DI+ FL KF+ RAV
Sbjct: 1103 LLGRYFEEEEEQGQEPGGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSGRAV 1162
Query: 794 ARILHGIASPAYPSTIWSK 812
ARI HGI SP YP+ ++ +
Sbjct: 1163 ARIFHGIGSPCYPAQVYGQ 1181
>gi|119602476|gb|EAW82070.1| RecQ protein-like 4, isoform CRA_a [Homo sapiens]
Length = 851
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 220/732 (30%), Positives = 325/732 (44%), Gaps = 146/732 (19%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 120 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSL 179
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQ+ LPP + + S ++ ++ I+ + VL ++PE + A L
Sbjct: 180 MDDQVSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALVGAGGLPPAAQL 239
Query: 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSA 373
++ +DEAHC+S+WSHNFRP Y+R+ +LR R+ V C L +TATAT T DV
Sbjct: 240 PPVAFACIDEAHCLSQWSHNFRPCYLRV-CKVLRERMGVHCFLGLTATATRRTASDVAQH 298
Query: 374 LEIPLS-NLIQKAQLRDNLQLSVS------------LSGNNRQN--------ERSAYVDE 412
L + +L A + NL LSVS L G QN R +
Sbjct: 299 LAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRREDTER 358
Query: 413 VFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK 472
+ + R+ H + SG + ++YH+G+ +++R R+Q F +
Sbjct: 359 IAALLRTCLHAAWVPGSGGR-----------APKTTAEAYHAGMCSRERRRVQRAFMQGQ 407
Query: 473 IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DD 528
+RVVVATVAFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL +D
Sbjct: 408 LRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQGED 467
Query: 529 ITYFRLRSLMYSDGVDEYAINKFLCQVFT------------------------------- 557
+ LR +++D D A+ + + +VF
Sbjct: 468 LR--ELRRHVHADSTDFLAVKRLVQRVFPACTCTCTRPPSEQEGAVGGERPVPKYPPQEA 525
Query: 558 -----NGMNSHGKLC-----SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELK 607
++C +L + + D+ EE + TLL LEL +L+LL
Sbjct: 526 EQLSHQAAPGPRRVCMGHERALPIQLTVQALDMPEEAIETLLCYLELHPHHWLELLATTY 585
Query: 608 VTCTLNFHKTTPTL--LADKDKMVATILKKS---ETKQG--QYVFDIPTVANSIGATTID 660
C LN L LA + +A L + + QG FD+ + +S+G
Sbjct: 586 THCRLNCPGGPAQLQALAHRCPPLAVCLAQQLPEDPGQGSSSVEFDMVKLVDSMGWELAS 645
Query: 661 VSNQLLNLKM---------RG--------EITYELKDPAYCYTIVEVPSDFCALSAHLTK 703
V L L+ RG E+ + L+ P E C +
Sbjct: 646 VRQALCQLQWDHEPRTGVRRGTGVLVEFSELAFHLRSPG--DLTAEEKDQICDFLYGRVQ 703
Query: 704 WLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQ----------KNILD-Y 752
++R+ + FH+ F C PCL+ K++L Y
Sbjct: 704 ARERQALARLRRTFQAFHSVAFP--------SCG-----PCLEQQDEERSTRLKDLLGRY 750
Query: 753 F----------RGDDNCDVPN--KIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGI 800
F D P ++ +R DI+ FL KF+ RAVARI HGI
Sbjct: 751 FEEEEGQEPGGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSSRAVARIFHGI 810
Query: 801 ASPAYPSTIWSK 812
SP YP+ ++ +
Sbjct: 811 GSPCYPAQVYGQ 822
>gi|297683922|ref|XP_002819610.1| PREDICTED: ATP-dependent DNA helicase Q4 [Pongo abelii]
Length = 1207
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 228/731 (31%), Positives = 335/731 (45%), Gaps = 145/731 (19%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 477 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYTRRSPCLTLVVSPLLSL 536
Query: 254 MIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
M DQ+ LPP IH G ++ QR E V + +R QV VL ++PE + A L
Sbjct: 537 MDDQVSGLPPCLKAACIHSG-MTRKQR-ESVLQKVRAAQV---HVLMLTPEALVGAGGLP 591
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
++ +DEAHC+S+WSHNFRP Y+R+ +LR R+ V C L +TATAT T
Sbjct: 592 PAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRV-CKVLRERMGVHCFLGLTATATHRTAS 650
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
DV L + L + A + NL LSVS+ + Q + E F S I+
Sbjct: 651 DVAQHLAVAEEPGLHRPAPVPANLHLSVSMDRDTDQALLTLLRGERFRDLDS-----III 705
Query: 428 ISGKHFETDLISRYL--CDNSISV------------KSYHSGIPAKDRSRIQELFCSNKI 473
+ +T+ I+ L C ++ V ++YH+G+ +++R R+Q F ++
Sbjct: 706 YCNRREDTERIAALLRTCLHAARVPGSGGRAPKTTAEAYHAGMCSQERRRVQRAFMQGQL 765
Query: 474 RVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDI 529
RVVVATVAFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL +D+
Sbjct: 766 RVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQGEDL 825
Query: 530 TYFRLRSLMYSDGVDEYAINKFLCQVF-----------------------------TNGM 560
LR +++D D A+ + + VF +
Sbjct: 826 R--ELRRHVHADSTDFLAVKRLVQCVFPACTCTRPPLEQEGAVGGERPVPKYPAEEAEQL 883
Query: 561 NSH-----------GKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVT 609
H G +L + + D+ EE + TLL LEL +L+L+
Sbjct: 884 GGHQATPGPRRACMGHERALPIQLTVQALDMPEEAIETLLCYLELHPHHWLELMATTYTH 943
Query: 610 CTLNFHKTTPTL--LADKDKMVATILKKS---ETKQG--QYVFDIPTVANSIGATTIDVS 662
C LN L LA + +A L + + +QG FD+ + +++G V
Sbjct: 944 CRLNCPGGPAQLQALAHRCPPLAVCLAQQLPEDPEQGSSSVEFDMVKLVDTMGWELASVR 1003
Query: 663 NQLLNLKMRGE-----------------ITYELKDPAYCYTIVEVPSDFCALSAHLTKWL 705
L L+ E + + L+ P E C L +
Sbjct: 1004 RALCQLQWDHEPRTGVQRGTGVLVEFSGLAFHLRSPG--DLTAEEKDQICDF---LYGRV 1058
Query: 706 SEVENCKVRKLDRMFHA-AVFAVDVCEKTHGCNGSLHTPCLQ----------KNILDYFR 754
E+ + +L R F A A C PCL+ K++L +
Sbjct: 1059 QAREHQALARLRRTFQAFRSVAFPSC-----------GPCLEQQDEERSTRLKDLLGRYF 1107
Query: 755 GDDNCDVPNKI--------GQS-----SPFLRADIKVFLQSNLNAKFTPRAVARILHGIA 801
++ P + GQ+ +R DI+ FL KF+ RAVARI HGI
Sbjct: 1108 EEEEAQGPGGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSGRAVARIFHGIG 1167
Query: 802 SPAYPSTIWSK 812
SP YP+ ++ +
Sbjct: 1168 SPCYPAQVYGQ 1178
>gi|38014099|gb|AAH11602.2| RECQL4 protein, partial [Homo sapiens]
Length = 741
Score = 278 bits (712), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 223/732 (30%), Positives = 328/732 (44%), Gaps = 146/732 (19%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 10 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSL 69
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQ+ LPP + + S ++ ++ I+ + VL ++PE + A L
Sbjct: 70 MDDQVSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALVGAGGLPPAAQL 129
Query: 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSA 373
++ +DEAHC+S+WSHNFRP Y+R+ +LR R+ V C L +TATAT T DV
Sbjct: 130 PPVAFACIDEAHCLSQWSHNFRPCYLRV-CKVLRERMGVHCFLGLTATATRRTASDVAQH 188
Query: 374 LEIPLS-NLIQKAQLRDNLQLSVS------------LSGNNRQN--------ERSAYVDE 412
L + +L A + NL LSVS L G QN R +
Sbjct: 189 LAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRREDTER 248
Query: 413 VFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK 472
+ + R+ H + SG + ++YH+G+ +++R R+Q F +
Sbjct: 249 IAALLRTCLHAAWVPGSGGR-----------APKTTAEAYHAGMCSRERRRVQRAFMQGQ 297
Query: 473 IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DD 528
+RVVVATVAFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL +D
Sbjct: 298 LRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQPQGED 357
Query: 529 ITYFRLRSLMYSDGVDEYAINKFLCQVF-----------------TNGMN---------- 561
+ LR +++D D A+ + + +VF G
Sbjct: 358 LR--ELRRHVHADSTDFLAVKRLVQRVFPACTCTCTRPPSEQEGAVGGERPVPKYPPQEA 415
Query: 562 ---SHG------KLC-----SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELK 607
SH ++C +L + + D+ EE + TLL LEL +L+LL
Sbjct: 416 EQLSHQAAPGPRRVCMGHERALPIQLTVQALDMPEEAIETLLCYLELHPHHWLELLATTY 475
Query: 608 VTCTLNFHKTTPTL--LADKDKMVATILKKS---ETKQG--QYVFDIPTVANSIGATTID 660
C LN L LA + +A L + + QG FD+ + +S+G
Sbjct: 476 THCRLNCPGGPAQLQALAHRCPPLAVCLAQQLPEDPGQGSSSVEFDMVKLVDSMGWELAS 535
Query: 661 VSNQLLNLKM---------RG--------EITYELKDPAYCYTIVEVPSDFCALSAHLTK 703
V L L+ RG E+ + L+ P E C +
Sbjct: 536 VRRALCQLQWDHEPRTGVRRGTGVLVEFSELAFHLRSPG--DLTAEEKDQICDFLYGRVQ 593
Query: 704 WLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQ----------KNILD-Y 752
++R+ + FH+ F C PCL+ K++L Y
Sbjct: 594 ARERQALARLRRTFQAFHSVAFP--------SCG-----PCLEQQDEERSTRLKDLLGRY 640
Query: 753 F----------RGDDNCDVPN--KIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGI 800
F D P ++ +R DI+ FL KF+ RAVARI HGI
Sbjct: 641 FEEEEGQEPGGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSSRAVARIFHGI 700
Query: 801 ASPAYPSTIWSK 812
SP YP+ ++ +
Sbjct: 701 GSPCYPAQVYGQ 712
>gi|407071503|ref|ZP_11102341.1| ATP-dependent DNA helicase RecQ [Vibrio cyclitrophicus ZF14]
Length = 644
Score = 278 bits (711), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 199/640 (31%), Positives = 307/640 (47%), Gaps = 63/640 (9%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+DS R+GQ + I VL ST + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 6 LKQVFGFDSLRNGQKQVIDNVLSGHSTAAIFPTGSGKSLCYQLPALELPHLTLVISPLLA 65
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SSQ + + ++ ++ G K+L +S ER N F F
Sbjct: 66 LMKDQLNFLHSKGISAAAIESSQDRQTAQQVMQSVRNGDTKILMISVERLKNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + +LN+ +L +TATATT+ ++D+
Sbjct: 125 SQVPISLLVVDEAHCISEWGHNFRPDYLKLPQ--YQKQLNIPQVLLLTATATTSVIQDMK 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
S EI ++ R NL LS+ N+ V++V + Y LQ +
Sbjct: 183 SKFEIAEERVVVTGFYRQNLDLSIQPCEQTNKLETLCNVVNQVS--QAPTIVYVTLQQTA 240
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+++++ L + I+ +YH+G+ ++R IQ+ F +N++ +VAT+AFGMG+DK +
Sbjct: 241 -----EMVAQQLRNAGINAVAYHAGLKPENRDTIQQQFMNNEVNCIVATIAFGMGVDKSN 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + ++ D D +I
Sbjct: 296 IRRVIHFDLPKSIENYSQEIGRAGRDGQPSECILLANKYGLSTLENFVFGDTPDNISIQA 355
Query: 551 FLCQVFTN-GMNSHG-KLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L +++ N + + G ++ SR+ +I++ + TLL LE+ + + P+
Sbjct: 356 VLKEIYENQNIGASGTNQWEIMLNQLSRESNIRQLPLKTLLVYLEIEGV----IEPKYSY 411
Query: 609 TCTLNF------HKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + T ++ V I + S + D + A V
Sbjct: 412 FADYKFKFIRPKQQITEQFQGERRHFVEAIFQCSPQARVWCQVDFDALWTHFQADRQRVV 471
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
+ +G I E K YTI D LS LT+ EN ++ +L++M
Sbjct: 472 AAIDYFNEQGWIELESKQITDVYTIHNTSEDMMQLSERLTELFKAKENSEINRLNQML-- 529
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVF--- 779
+ F D CL + YF D P G S R +I +
Sbjct: 530 SFFEGDT--------------CLSSRLASYFADD---KAPTNCGHCS-VCRGEIAILPTV 571
Query: 780 ----------------LQSNLNAKFTPRAVARILHGIASP 803
S T A+ R L GIA+P
Sbjct: 572 DVESVDDETVMTWIHEFVSKSQQLITDEAITRFLCGIATP 611
>gi|386018987|ref|YP_005937011.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
stutzeri DSM 4166]
gi|327478959|gb|AEA82269.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
stutzeri DSM 4166]
Length = 641
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 191/583 (32%), Positives = 285/583 (48%), Gaps = 40/583 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
LR +GYDS R GQ +AI+ V+ +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 6 LRQTFGYDSLRPGQEQAIRAVVAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 65
Query: 253 LMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
LM DQL L HG G + S+Q E+ +ET+ + G +K+L +S ER N F
Sbjct: 66 LMQDQLAFLQR--HGIVAGSIDSAQSREQASETMARAKSGELKILMISVERLKNERFRH- 122
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F + ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATAT + D
Sbjct: 123 FISQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQVLLLTATATQPAIAD 180
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+ + I +++ R NL L V +SG N+Q V+ + Y+ Q
Sbjct: 181 MQAKFSIAADDVVTTGFYRPNLNLLVEPVSGFNKQRR---LVEWLTGKAGQPTIVYVTQ- 236
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ I+ +L +YH+G+ + R IQ F + ++ +VAT+AFGMG+DK
Sbjct: 237 ---QKTAEQIAEHLAQRGFPASAYHAGMAHEQRESIQRRFMAGELNCIVATIAFGMGIDK 293
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
D+ V+HY LP+S+E Y QEIGRAGRDG S C + + + L++ +Y D + I
Sbjct: 294 ADIRNVVHYDLPKSVENYSQEIGRAGRDGNASDCLVLANRDSLSVLQNFVYGDTPEREGI 353
Query: 549 NKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPEL 606
L ++ G G L+ S + +I++ + TLL LEL I E
Sbjct: 354 RCVLDELLQAGA---GGQWELMLNQLSDQSNIRQLPLKTLLVQLELRGIIAPRFAYFAEY 410
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ L ++ + V I+ S + D + GA V L
Sbjct: 411 RFKYLLEPEALVAKFDGERRQFVEAIVHTSARARTWCTLDFEALYGQHGADRARVVKALE 470
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
+ +G I E K Y +++ D ALS L + E E ++ ++D M A+F
Sbjct: 471 YFQEKGWIELESKQMTEVYALLDTRFDAEALSRELHAYFKEHEASEIARIDNML--ALFE 528
Query: 727 VDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + + YF GD P + G S
Sbjct: 529 --------------SAECLSQRLAAYF-GDRQ--APQRCGHCS 554
>gi|359719491|gb|AEV53961.1| RecQ-like protein [Stylonychia lemnae]
Length = 1153
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 227/367 (61%), Gaps = 14/367 (3%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKK-STMLVLPTGAGKSLCYQIPAMILPG 242
+SDE ++L+ +G+++F+ GQLEAIK++L+KK + ++VL TG GKSL YQ +M L G
Sbjct: 515 SSDEEYQKILKERFGHETFKAGQLEAIKILLEKKQNALVVLATGGGKSLVYQYVSMFLQG 574
Query: 243 LTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
L L+V PL++LM DQL LP + G L+S Q + E I+ IQ IK+LF+SPE+F
Sbjct: 575 LVLIVTPLISLMTDQLGKLPDFLPGASLNSQQNYQLKKEVIKAIQDKHIKILFISPEKFF 634
Query: 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVE---CILAMT 359
DF I++V VDE HC SEWSHNFRP+Y++L + N + ++ +T
Sbjct: 635 IEDFSKY---NRKIAMVCVDEIHCASEWSHNFRPAYLKLHDMIKEKVSNQQDNCVVMGLT 691
Query: 360 ATATTTTLRDVMSALEIPL-SNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFH 417
ATAT T R V ++ +++ +A L R NL LS++ R ++ + + + +
Sbjct: 692 ATATKATQRSVCKIFDVKYPDHIVTEANLSRMNLSLSIT-----RDQDKLKSLLALLASN 746
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
K IL + + ++ +L N I+ +YH+G + R IQ+ F +N IRV+V
Sbjct: 747 SFKKLTSILIFATHKGTCERLASHLNQNGINSSAYHAGKTDQQRQMIQKNFINNNIRVLV 806
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
T+AF MG+DK D+ +VIHY +P+S+E YVQEIGRAGRDG+L+ CHLFL + ++ +R L
Sbjct: 807 CTIAFSMGIDKSDIQSVIHYDMPKSIENYVQEIGRAGRDGKLARCHLFLCNEDFYLIRRL 866
Query: 538 MYSDGVD 544
+ +D +D
Sbjct: 867 ILTDILD 873
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 6/152 (3%)
Query: 578 FDIKEEVMLTLLTCLE--LGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKK 635
D+K+EV+LT+L LE E ++ +L L L FH P +A + + ++
Sbjct: 972 LDLKKEVVLTMLNSLEKLTDEKKFFRLEGILPEKIGLRFHNKRPEQMAKDNSFIRKFMEI 1031
Query: 636 SETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK--MRGEITYELKDPAYCYTIVEVPSD 693
++ QG Y +A + + L +L+ G+I+Y+ ++ + +PS
Sbjct: 1032 AKEHQGVYNVSTQRLAYELNMNPFQIPKILFSLQNTEHGDISYDTDQDSFVLRLQHIPSG 1091
Query: 694 FCA--LSAHLTKWLSEVENCKVRKLDRMFHAA 723
LS + +E ++KL+ M+ A
Sbjct: 1092 GSTFDLSQDMLTETRRIERNMIQKLNCMYFVA 1123
>gi|21358123|ref|NP_652607.1| RecQ4 [Drosophila melanogaster]
gi|7295152|gb|AAF50477.1| RecQ4 [Drosophila melanogaster]
Length = 1579
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 218/703 (31%), Positives = 330/703 (46%), Gaps = 96/703 (13%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLV 251
++G+ +FR GQ AI L S+++ L TG+GKSLCYQ+PA + + +TLV+ PLV
Sbjct: 865 MFGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLPAYLYSRKVGAITLVISPLV 924
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FL 307
+LM DQ+ +P + L ++Q + + ++I G I +L VSPE + + F
Sbjct: 925 SLMEDQVTGVPHFLRAHCLHTNQTAPQRMKIQQMIANGEIDILLVSPEAVVAGERATGFG 984
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
+I I+ +DEAHCVS+WSHNFRPSY+ + +LR L V +L +TATAT T
Sbjct: 985 AILRQLPPIAFACIDEAHCVSQWSHNFRPSYLMI-CKVLRKNLGVRTVLGLTATATLPTR 1043
Query: 368 RDVMSALEIPLS--NLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+++ L I +I L DNL LSVS N R A + ++ + R I
Sbjct: 1044 VSIINHLGISDGERGIISDIPLPDNLVLSVSKDEN-----RDAALLQLLNSERFEPCQSI 1098
Query: 426 LQISGKHFETDLISRYL--CDN----------------SISVKSYHSGIPAKDRSRIQEL 467
+ + E + I+ ++ C + + YH+G+PA R +Q+
Sbjct: 1099 IIYCTRRDECERIAGFIRTCVQDRREPTQDQTKKRKRVNWQAEPYHAGMPASRRRTVQKA 1158
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
F SN++R+VVAT+AFGMG++K D+ AVIHY++P + E YVQEIGRAGRDG S+CHLFLD
Sbjct: 1159 FMSNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIGRAGRDGLPSHCHLFLD 1218
Query: 528 --DITYFRLRSLMYSDGVDEYAINKFLCQVFT--------------------NGMNSH-- 563
LR +YS+ +D + I K L ++F +G H
Sbjct: 1219 AKGGDQSELRRHVYSNSIDRHVIRKLLQKIFVPCSCDKEASKRTALPIPLEGDGPRVHMC 1278
Query: 564 -GKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLL 622
G E DI E + TLL +EL + +L V + P L
Sbjct: 1279 PGHEIGFSVEKTVEMLDIPAENISTLLCYMELDPRWCISVLSSAYVMAKV-ISYGGPKYL 1337
Query: 623 ADKDK-------MVATILKKSETKQGQYV--FDIPTVANSIGATTIDVSNQLLNLKM--- 670
K +A ++ K+ + F + +A IG + V QL +L+
Sbjct: 1338 KHAAKECPPLAMAIALQIRDKTFKEDSNIIEFSVTDIAAGIGWNSGVVKYQLKDLEWVKV 1397
Query: 671 -----RGEITYELKDPAYCYTIVEVPSDFC------ALSAHLTKWLSEVENCKVRKLDRM 719
R IT D + ++VP DF AL T+ + + E ++ +L +
Sbjct: 1398 NGYPKRSPITVSFYDLGF---RIKVPGDFTESEIDNALDTLYTRSVKQ-ERTQLIQLQYV 1453
Query: 720 FHA-AVFAVDVCEKTHGCNGSL---HTPCLQKNILDYFRGDDNCDVPNKIGQSS---PFL 772
H A A C + CN L+ + +YF D D+ +I S+ +
Sbjct: 1454 AHGLAAVAYSSCGQC--CNADFPQDRGEQLKAIVRNYFANDYPQDLELEIEPSNVPDENI 1511
Query: 773 RADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
D+ + + FT R +ARI HGI SP YP+ IW + F
Sbjct: 1512 IDDVHALINMYPDNTFTGRNIARIFHGIMSPNYPAVIWGRCKF 1554
>gi|254428239|ref|ZP_05041946.1| ATP-dependent DNA helicase, RecQ family [Alcanivorax sp. DG881]
gi|196194408|gb|EDX89367.1| ATP-dependent DNA helicase, RecQ family [Alcanivorax sp. DG881]
Length = 633
Score = 275 bits (704), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 206/642 (32%), Positives = 320/642 (49%), Gaps = 66/642 (10%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
+ L + L+ + +FR GQ I +L +S + V PTG GKSLCYQ+PA++ G+TLV
Sbjct: 2 QALQQHLQQTFQLQAFRPGQQAVIDALLAGRSALAVFPTGGGKSLCYQLPALMFSGVTLV 61
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL+ALM DQ+ L + I L SS E++ R + G+IK+L+V+PER N
Sbjct: 62 VSPLIALMKDQVDQLHRLGIAAARLDSSVDAEQLQGIYRGLDDGSIKLLYVAPERLANER 121
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
FL+ S IS++ VDEAHCVSEW HNFRP Y++L + L + LNV +LA+TATAT
Sbjct: 122 FLARLKRLS-ISMMAVDEAHCVSEWGHNFRPDYLKL--AQLASDLNVGRVLALTATATPQ 178
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH--- 422
+ + I + +Q R NL LS+ +N A + + S RSS+
Sbjct: 179 VAEQIRDSFSIAREDHVQTGFFRPNLALSIR--PHNASERDQALLAALQS--RSSEPAIV 234
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y LQ + + ++ +L + ++YH+G+ +R R+QE F + + +VVAT+AF
Sbjct: 235 YVTLQKTAEQ-----VAGFLQAQGLPAQAYHAGLKDDERHRVQETFMAGQGNIVVATIAF 289
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYS 540
GMG+DK D+ A+ HY+LP+SLE Y+QEIGRAGRDG S C L DD+T L + Y
Sbjct: 290 GMGIDKADIRAIYHYNLPKSLENYMQEIGRAGRDGAPSECVLLAGSDDLTV--LENFSYG 347
Query: 541 DGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYL 600
D D ++ + + + + + L S +FD++ V+ TLLT LEL + +
Sbjct: 348 DTPDSTSLAGLI-----DWLVAQPEQFDLSVHELSGQFDVRPLVINTLLTYLELEGV--V 400
Query: 601 QLLPELKVTCTLNFHKTTPTLLADKDKMVATILKK--SETKQGQYVFDIPTV--ANSIGA 656
+ L F + +++ + A L++ + KQG+ + + A +
Sbjct: 401 RATAPFYTEYKLAFRTSQDDVISQFNDDRADFLQRVFATGKQGRIWVTLKPIDAAAELQV 460
Query: 657 TTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKL 716
+ + L L+ +G I + Y +++ P + AL+A + + E +++L
Sbjct: 461 DRLRILKALGYLEQQGMIELRVAGVRQGYRMLQRPQEPQALTARMEEQFRVREQRDIQRL 520
Query: 717 DRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS------- 769
+ VC+ G C Q+ ++ YF +P GQ S
Sbjct: 521 QQ----------VCDWAEGKG------CYQQALVSYF----GERLPEPCGQCSHCKGEHC 560
Query: 770 PFL--------RADIKVFLQSNLNAKFTPRAVARILHGIASP 803
P A I+ Q A TPR +AR L GI+SP
Sbjct: 561 PMTARHRRVPDAAVIQAVRQEGHGALATPRQLARFLCGISSP 602
>gi|7229681|gb|AAF42939.1|AF233659_1 RECQ4 [Drosophila melanogaster]
Length = 1530
Score = 275 bits (704), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 218/703 (31%), Positives = 330/703 (46%), Gaps = 96/703 (13%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLV 251
++G+ +FR GQ AI L S+++ L TG+GKSLCYQ+PA + + +TLV+ PLV
Sbjct: 816 MFGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLPAYLYSRKVGAITLVISPLV 875
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FL 307
+LM DQ+ +P + L ++Q + + ++I G I +L VSPE + + F
Sbjct: 876 SLMEDQVTGVPHFLRAHCLHTNQTAPQRMKIQQMIANGEIDILLVSPEAVVAGERATGFG 935
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
+I I+ +DEAHCVS+WSHNFRPSY+ + +LR L V +L +TATAT T
Sbjct: 936 AILRQLPPIAFACIDEAHCVSQWSHNFRPSYLMI-CKVLRKNLGVRTVLGLTATATLPTR 994
Query: 368 RDVMSALEIPLS--NLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+++ L I +I L DNL LSVS N R A + ++ + R I
Sbjct: 995 VSIINHLGISDGERGIISDIPLPDNLVLSVSKDEN-----RDAALLQLLNSERFEPCQSI 1049
Query: 426 LQISGKHFETDLISRYL--CDN----------------SISVKSYHSGIPAKDRSRIQEL 467
+ + E + I+ ++ C + + YH+G+PA R +Q+
Sbjct: 1050 IIYCTRRDECERIAGFIRTCVQDRREPTQDQTKKRKRVNWQAEPYHAGMPASRRRTVQKA 1109
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
F SN++R+VVAT+AFGMG++K D+ AVIHY++P + E YVQEIGRAGRDG S+CHLFLD
Sbjct: 1110 FMSNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIGRAGRDGLPSHCHLFLD 1169
Query: 528 --DITYFRLRSLMYSDGVDEYAINKFLCQVFT--------------------NGMNSH-- 563
LR +YS+ +D + I K L ++F +G H
Sbjct: 1170 AKGGDQSELRRHVYSNSIDRHVIRKLLQKIFVPCSCDKEASKRTALPIPLEGDGPRVHMC 1229
Query: 564 -GKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLL 622
G E DI E + TLL +EL + +L V + P L
Sbjct: 1230 PGHEIGFSVEKTVEMLDIPAENISTLLCYMELDPRWCISVLSSAYVMAKV-ISYGGPKYL 1288
Query: 623 ADKDK-------MVATILKKSETKQGQYV--FDIPTVANSIGATTIDVSNQLLNLKM--- 670
K +A ++ K+ + F + +A IG + V QL +L+
Sbjct: 1289 KHAAKECPPLAMAIALQIRDKTFKEDSNIIEFSVTDIAAGIGWNSGVVKYQLKDLEWVKV 1348
Query: 671 -----RGEITYELKDPAYCYTIVEVPSDFC------ALSAHLTKWLSEVENCKVRKLDRM 719
R IT D + ++VP DF AL T+ + + E ++ +L +
Sbjct: 1349 NGYPKRSPITVSFYDLGF---RIKVPGDFTESEIDNALDTLYTRSVKQ-ERTQLIQLQYV 1404
Query: 720 FHA-AVFAVDVCEKTHGCNGSL---HTPCLQKNILDYFRGDDNCDVPNKIGQSS---PFL 772
H A A C + CN L+ + +YF D D+ +I S+ +
Sbjct: 1405 AHGLAAVAYSSCGQC--CNADFPQDRGEQLKAIVRNYFANDYPQDLELEIEPSNVPDENI 1462
Query: 773 RADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
D+ + + FT R +ARI HGI SP YP+ IW + F
Sbjct: 1463 IDDVHALINMYPDNTFTGRNIARIFHGIMSPNYPAVIWGRCKF 1505
>gi|390176355|ref|XP_001354213.2| GA20388 [Drosophila pseudoobscura pseudoobscura]
gi|388858726|gb|EAL31265.2| GA20388 [Drosophila pseudoobscura pseudoobscura]
Length = 1558
Score = 275 bits (704), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 217/706 (30%), Positives = 332/706 (47%), Gaps = 99/706 (14%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLV 251
++G+ +FR GQ A+ L S+++ L TG+GKSLCYQ+PA + +TLV+ PLV
Sbjct: 841 MFGHSNFRKGQDRAVMRTLSGLSSLVTLSTGSGKSLCYQLPAYLYNRQRGAITLVISPLV 900
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FL 307
+LM DQ+ +P + L ++Q P++ + +I G I +L VSPE ++ + F
Sbjct: 901 SLMEDQVTGVPQFLRAHCLHTNQTPQQRIKVQEMIANGEIDILLVSPEAVVSGERATGFG 960
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
+I I+ +DEAHCVS+WSHNFRPSY+ + +L+ L V+ +L +TATAT T
Sbjct: 961 AILRKLPPIAFACIDEAHCVSQWSHNFRPSYLMI-CKVLKKNLGVQTVLGLTATATLPTR 1019
Query: 368 RDVMSALEIPLS--NLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+++ L I +I L DNL LSVS N R A + ++ + R I
Sbjct: 1020 VSIINHLGITDGERGIISDTPLPDNLVLSVSKDEN-----RDAALLQLLNSERFESCQSI 1074
Query: 426 LQISGKHFETDLISRYL--CDN------------------SISVKSYHSGIPAKDRSRIQ 465
+ + E + I+ ++ C + + YH+G+PA R IQ
Sbjct: 1075 IIYCTRRDECERIAGFIRTCVQDRRKPDGAQEQGKKRKRVNWQAEPYHAGMPASRRRTIQ 1134
Query: 466 ELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ F N++R+VVAT+AFGMG++K D+ AVIHY++P + E YVQEIGRAGRDG ++CHLF
Sbjct: 1135 KAFMGNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIGRAGRDGLHAHCHLF 1194
Query: 526 LD--DITYFRLRSLMYSDGVDEYAINKFLCQVF---------------------TNGMNS 562
LD LR +Y++ +D + I K L ++F +G
Sbjct: 1195 LDARGGDQGELRRHVYANSIDRHVIRKLLQKIFVPCSCEKQLPKGTEPQAAAIEADGTRY 1254
Query: 563 H---GKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTP 619
H G E DI E + TLL +EL + +L + + P
Sbjct: 1255 HICPGHEIGFSVEKTVEALDIPAENISTLLCYMELEPRWCINVLSSAYIMAKV-ISYGGP 1313
Query: 620 TLLADKDK-------MVATILKKSETKQGQYV--FDIPTVANSIGATTIDVSNQLLNLKM 670
L K +A +K K + F + +A IG + V QL +L+
Sbjct: 1314 KYLKHAAKECPPLAMAIALQIKGKTFKDDSNIIEFSVTDIAAGIGWNSGVVKYQLKDLEW 1373
Query: 671 --------RGEITYELKDPAYCYTIVEVPSDFC------ALSAHLTKWLSEVENCKVRKL 716
R IT D + ++VP DF AL T+ + + E ++ +L
Sbjct: 1374 IKVGGYPKRSPITVSFYDLGF---RIKVPGDFTETEIDNALDTLYTRSVKQ-EKTQLIQL 1429
Query: 717 DRMFHA-AVFAVDVCEKTHGCNGSL-HTPCLQ-KNIL-DYFRGDDNCDVPNKIGQSS--- 769
+ H A A C H C+ C Q K I+ +YF D D+ +I S+
Sbjct: 1430 QYVAHGLAAVAYSSCH--HCCSADFPQDRCTQLKAIVRNYFLNDYPQDLELEIEPSNVPD 1487
Query: 770 PFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
+ D+ + + FT R +ARI HGI SP YP+ +W + F
Sbjct: 1488 ESIVDDVHSLINMYPDNTFTGRNIARIFHGITSPNYPAVMWGRCKF 1533
>gi|158294994|ref|XP_315948.4| AGAP005917-PA [Anopheles gambiae str. PEST]
gi|157015824|gb|EAA11913.5| AGAP005917-PA [Anopheles gambiae str. PEST]
Length = 1566
Score = 275 bits (702), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 217/735 (29%), Positives = 336/735 (45%), Gaps = 133/735 (18%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLV 251
++G+ SFR GQ A+ VL ST++ L TGAGKSLCYQ+PA + +TLV+ PLV
Sbjct: 825 MFGHQSFRHGQERAVMRVLCGLSTLVTLSTGAGKSLCYQLPAYLYRKNRSCITLVISPLV 884
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FL 307
+LM DQ+ +P ++ L ++Q P+ T++ I G + VL +SPE ++ + F
Sbjct: 885 SLMEDQVHGMPDFLNAHCLHTNQTPKVRDRTMQAIAAGEVDVLLISPEAVVSGEKSTGFG 944
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
S+ I+ +DEAHCVS+WSHNF+ +L V+ IL +TATAT L
Sbjct: 945 SLLRQLPPIAFACIDEAHCVSQWSHNFQ-------------KLGVKTILGLTATATVICL 991
Query: 368 --------RDVMSALEIP--LSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH 417
+ ++S L IP + +I L DNL L+VS N R + E+
Sbjct: 992 IRLSSICRQSIVSHLAIPDGVQGIISDIPLPDNLLLTVSRDAN-----RDVALVELLQSE 1046
Query: 418 RSSKHYYILQISGKHFETDLISRYL--CDNSIS-----------------VKSYHSGIPA 458
R S I+ + + + ++ ++ C + + YH+G+PA
Sbjct: 1047 RFSSLQSIIVYCTRRDDCERVATFIRTCFQDAARAAAAANAHKRKRLNYVAEPYHAGMPA 1106
Query: 459 KDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
R IQ F S ++R+VVAT+AFGMG++K D+ A+IHY++P++ E YVQE+GRAGRDG
Sbjct: 1107 SRRRTIQNAFMSGELRIVVATIAFGMGINKADIRAIIHYNMPKNFESYVQEVGRAGRDGL 1166
Query: 519 LSYCHLFLDDITYFR--LRSLMYSDGVDEYAINKFLCQVFT------------------- 557
LS+CHLFLD R LR +Y++ +D + I K L ++F
Sbjct: 1167 LSHCHLFLDGKGTDRNELRRFIYANSIDRHVIRKLLQKIFVPCACAKILTNKDLALELRE 1226
Query: 558 ----------------------------NGMNSHGKLCS-----LVKESASRKFDIKEEV 584
G + +LC E+ ++ DI EE
Sbjct: 1227 ELKAVNGIDWDDDFEELSTADGRMQADGGGGGTRKRLCPGHEICFSIEATVQQLDIPEEN 1286
Query: 585 MLTLLTCLELGEIQYLQLLPELKVTC-TLNFHKTTPTLLADKD-----KMVATILKKSET 638
+ T L LEL E +Y+Q L C +++ P A K+ A LK+ +
Sbjct: 1287 ITTFLCYLELDEQRYIQALSPAYTMCKVMSYGGVRPLRQAAKECPPLAMAFALDLKRGIS 1346
Query: 639 KQGQYVFDIPT--VANSIGATTIDVSNQLLNLKMRGEITYELKDP-AYCYT----IVEVP 691
+ P VA++IG + V QL NL+ + P + +T V P
Sbjct: 1347 HATSTAIEFPVIDVASAIGWDSGVVKYQLKNLEWTTVNNVRKRSPLSVTFTELGFRVRAP 1406
Query: 692 SDFC--ALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPC----- 744
D L L V + + +L ++ + + VC T G P
Sbjct: 1407 GDLTDEELDHALDGLYERVTHQERTQLAQLQYISDALNSVCFNTIGPVSRADCPTGPSDK 1466
Query: 745 LQKNILDYFRGDDNCD----VPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGI 800
L+ + +YF D + + VP + L DI+ + FT RA+AR+ HG+
Sbjct: 1467 LKTIVREYFTTDISKEQIEIVPEPDDTTDEQLINDIRTAICRYPENNFTGRAIARLFHGV 1526
Query: 801 ASPAYPSTIWSKTHF 815
SP Y + +WS+++F
Sbjct: 1527 QSPNYTALVWSRSNF 1541
>gi|322798352|gb|EFZ20087.1| hypothetical protein SINV_13455 [Solenopsis invicta]
Length = 1309
Score = 275 bits (702), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 206/682 (30%), Positives = 355/682 (52%), Gaps = 69/682 (10%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLV 251
++G+++FR GQ +A+ +L +ST++ L TG+GKSLCYQ+PA + +TLV+ PLV
Sbjct: 611 MFGHENFRAGQEKAVMRILSGRSTLVTLSTGSGKSLCYQLPAYLYARRSNCITLVISPLV 670
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FL 307
+LM DQ+ +P + L + Q + + I+ ++ G + +L VSPE + + F
Sbjct: 671 SLMDDQVTGVPSFLSAACLHTGQSDKVKQQVIQSVKDGKVNILLVSPEAVVAGEKSTGFG 730
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ LI+ +DEAHC+S+WSHNFRPSY+ + +L+ + V+ +L +TATAT TT
Sbjct: 731 ALLGQLPLIAFACIDEAHCISQWSHNFRPSYL-MVCRVLKKKFGVKTVLGLTATATRTTA 789
Query: 368 RDVMSALEIP--LSNLIQKAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF-- 416
++ L+I ++ +I L NL L+VS N Q +ER D V +
Sbjct: 790 ESIIRHLDIDDGMAGVISDMPLPRNLVLTVSKDENKDQALIALLKSERFRECDSVIVYCL 849
Query: 417 --HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
++ +L+IS + + R S ++YH+G+ + R +Q+ F + KI+
Sbjct: 850 RREECTRIAGLLRISLQDPQNP--ERPNLKISTIAEAYHAGMTSYRRKIVQKGFMNGKIK 907
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD---DITY 531
+VVAT+AFGMG++K D+ AVIHY++P + E YVQE+GRAGRD S+CHLFL+ D
Sbjct: 908 IVVATIAFGMGINKPDIRAVIHYNVPGTFEGYVQEVGRAGRDSTTSHCHLFLNPTQDSDK 967
Query: 532 FRLRSLMYSDGVDEYAINKFLCQVF----------TNGMNSHGKLCSLVKESASRKFDIK 581
+ LR ++++G+D + I L ++F +G G +L + + DI
Sbjct: 968 WELRRHIHANGIDRHTIRHLLQRIFIPCSCAKIEKDSGQRCPGHEVALPIDETVQALDIT 1027
Query: 582 EEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDK------MVATILKK 635
+E + TLL LEL +++ +L + + ++ ++ L +A +K
Sbjct: 1028 QETISTLLCYLELHPKRFVTVLSSVYIRARVSSYEGPKALKQAAQSSPPLAMAIALDMKN 1087
Query: 636 SETKQGQYV--FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI------ 687
+ + + F + VA++IG + V + L +L+ + I ++K A
Sbjct: 1088 GISHENSNIIEFSVIDVASAIGWDSGVVKSHLKSLEYK-TIDGKIKRSAISVQYDKLGLR 1146
Query: 688 VEVPSDFC------ALSAHLTKWLSEVENCKVRKLDRMFHA----AVFAVDVCEKTHGCN 737
V+ P D AL A + + ++ C +++L+ +F A +V ++ C +
Sbjct: 1147 VKAPGDLTDLELDEALDALIVRTQTQESLC-LQQLELIFSALDKISVPSIKYCSNLDD-D 1204
Query: 738 GSLHTPCLQKNILDYFRGD--DNCDV--PNKIGQSSPFLRADIKVFLQSNLNAKFTPRAV 793
+ L+ I +YF+ D +N D+ N++ + D++ + + KFT RAV
Sbjct: 1205 MMKRSEELKHTIREYFQLDSLNNLDINFQNEVTNEQQ-IATDVRSLIIHYKDTKFTGRAV 1263
Query: 794 ARILHGIASPAYPSTIWSKTHF 815
ARI HGI SP YP+ IW++ F
Sbjct: 1264 ARIFHGIQSPNYPAIIWNRCRF 1285
>gi|407688625|ref|YP_006803798.1| RecQ domain-containing protein [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292005|gb|AFT96317.1| RecQ domain-containing protein [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 663
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 193/606 (31%), Positives = 303/606 (50%), Gaps = 56/606 (9%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
SD N+ L+ ++G+ +FR+GQ EA++ +L ST+ + PTG+GKSLCYQ A LP LT
Sbjct: 3 SDPNI---LQQLFGFSAFREGQKEAVESLLGGNSTLAIFPTGSGKSLCYQFVATQLPHLT 59
Query: 245 LVVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
LVV PL+ALM DQL L I + S+ PE+ + + ++ G K+L VS ERF N
Sbjct: 60 LVVSPLLALMKDQLEFLHSKGIAAASIDSTLTPEQNKQVMNDVRSGQCKILMVSVERFKN 119
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
F F + +S++VVDEAHC+SEW HNFRP Y++L A + LN+ +L +TATAT
Sbjct: 120 ERFRQ-FIESVPVSMLVVDEAHCISEWGHNFRPDYLKLPA--YQKELNIPLVLLLTATAT 176
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D+ + +I SN+IQ R NL L V +N+ A ++E+ + Y
Sbjct: 177 KKVKEDMAARFDIAPSNIIQTGFYRPNLNLHVRPVHEPYKNQ--ALLEEIQKQQGAGIVY 234
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
LQ S + ++R+L + K+YH+G+ + R IQ+ F NK++VVVAT+AFG
Sbjct: 235 VTLQNSAEE-----VARFLQQQGFAAKAYHAGLDSGVRQGIQQDFMHNKLQVVVATIAFG 289
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK D+ V+HY LP+S+E Y QEIGR GRDG+ + C + + + + +Y D
Sbjct: 290 MGIDKSDIRFVVHYDLPKSIENYSQEIGRGGRDGKAANCTVLANLDGLVTIENFVYGDTP 349
Query: 544 DEYAINKFLCQVF----------------TNGMNSHGKLCSLVKESASRKFDIKEEVMLT 587
D+ AI + + + TNG NS + + + S S +I++ + T
Sbjct: 350 DKSAIQRVIDDISAQASAHINSAAHNDLPTNGENSVYQWETQIN-SLSSASNIRQLPLKT 408
Query: 588 LLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLA----DKDKMVATILKKSETKQGQY 643
LL LEL + ++ L F T+L ++ + + + S K+
Sbjct: 409 LLVQLELANV--IRPLYAYFAEYKFRFISEKTTILGLFSEERARFLDAVFTHSSMKKVWG 466
Query: 644 VFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTK 703
+ D ++ GA V L L I + Y + L+ +L +
Sbjct: 467 IVDFDSIYQHYGAERARVVAALEYLHEHNHIELASRLITDVYRVDYEKLQDADLANNLAR 526
Query: 704 WLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPN 763
+ +E E ++ ++ + + F ++ CL N+ YF D+ VPN
Sbjct: 527 YFAENERKEIERIAAL--VSFFELNT--------------CLSYNLSAYF---DDTQVPN 567
Query: 764 KIGQSS 769
+ G S
Sbjct: 568 ECGHCS 573
>gi|197337296|ref|YP_002158796.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri MJ11]
gi|197314548|gb|ACH63997.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri MJ11]
Length = 638
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 198/633 (31%), Positives = 297/633 (46%), Gaps = 55/633 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+DS R GQ + I+ VL+ S+ + PTG+GKSLCYQ+PA+ILP LTLV+ PL+A
Sbjct: 6 LKETFGFDSLRGGQQQVIEKVLNGHSSAAIFPTGSGKSLCYQLPALILPNLTLVISPLLA 65
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I + S+Q EE ++ ++ G IK+L +S ER N F F
Sbjct: 66 LMKDQIAFLKSKGIAAASIDSTQTREETQAILQGVRNGEIKILMISVERLKNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT + D+
Sbjct: 125 AQINISLLVVDEAHCISEWGHNFRPDYLKLPQD--REALNIPQVLLLTATATPAVIEDMS 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
I +++ R NL +S+ + Q + + + S Y LQ + +
Sbjct: 183 KKFNIAQDDIVITGFYRPNLDISI-IPVEEEQKRSALFATLKQRPDQPSIVYVTLQQTAE 241
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+ ++++L N I K+YH+G+ R IQ F +I +VAT+AFGMG+DK D+
Sbjct: 242 N-----VAQWLQSNGIQAKAYHAGLKNDVRETIQHQFMHGEINCIVATIAFGMGVDKSDI 296
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG S+C + + L + +Y D D AI
Sbjct: 297 RQVIHFDLPKSIENYSQEIGRAGRDGLPSFCTVLANTSGLNVLENFVYGDTPDREAIQYV 356
Query: 552 LCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKVT 609
L ++ +L L K+S R+ +K TLL LEL +I + +
Sbjct: 357 LDDIYQANETWETQLLRLSKDSNVRQLPLK-----TLLVYLELKKIIQAKYSYYADYRFK 411
Query: 610 CTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK 669
+ + ++ + V+TI + S + + D + V L
Sbjct: 412 TLIPINDIIAKFQTERQQFVSTIFQCSPKAKTWHTVDFDALWMGFRGERKRVIAALDYFN 471
Query: 670 MRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDV 729
+G I E K Y ++ LS + E ++ ++ M +D
Sbjct: 472 EQGWIELESKQMTEVYQVLNKVESTHVLSQEQHQLFKNKEQSEINRIHAM-------LDF 524
Query: 730 CEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIG-------------QSSPFLRAD- 775
E CL + YF + + P K G +SSP AD
Sbjct: 525 FET---------KSCLSHALAHYFA---DFNAPEKCGHCSACRSEAAVLPRSSPHFIADD 572
Query: 776 --IKVFLQSNLNAKFTPRA---VARILHGIASP 803
+K + Q N+ P A AR L GI +P
Sbjct: 573 ENVKAWCQELQNSSKEPLANAVFARFLCGIPTP 605
>gi|339492404|ref|YP_004712697.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
gi|338799776|gb|AEJ03608.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
Length = 641
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 182/545 (33%), Positives = 274/545 (50%), Gaps = 25/545 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
LR +GYDS R GQ +AI+ V+ +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 6 LRQTFGYDSLRPGQEQAIRAVVAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 65
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
LM DQL RH I + S+Q E+ +ET+ + G +K+L +S ER N F
Sbjct: 66 LMQDQLAFLHRH---GIAAASIDSAQSREQTSETMARAKSGELKILMISVERLKNERFRH 122
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F + ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT +
Sbjct: 123 -FISQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQALLLTATATPPVIA 179
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ + I +++ R NL L V +SG N+Q ++ + R+ + +
Sbjct: 180 DMQAKFSIAADDVVTTGFYRPNLNLLVEPVSGFNKQRRLVEWLTD-----RAGQPTIVYV 234
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
K E I+ +L +YH+G+ + R IQ F + ++ +VAT+AFGMG+D
Sbjct: 235 TQQKTAEQ--IAEHLAQRGFPASAYHAGMAHELRESIQRRFMAGELNCIVATIAFGMGID 292
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+HY LP+S+E Y QEIGRAGRDG S C + + + L++ +Y D +
Sbjct: 293 KADIRNVVHYDLPKSVENYSQEIGRAGRDGNASDCLVLANRDSLSVLQNFVYGDTPEREG 352
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPE 605
I L ++ G G L+ S + +I++ + TLL LEL I E
Sbjct: 353 IRCVLDELLQAGA---GGQWELMLNQLSEQSNIRQLPLKTLLVQLELRGIIAPRFAYFAE 409
Query: 606 LKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQL 665
+ L ++ + V I+ S + D + GA V L
Sbjct: 410 YRFKYLLEPEALVAKFEGERRQFVEAIVHTSARARTWCTLDFEALYGQHGADRARVVKAL 469
Query: 666 LNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVF 725
+ +G I E K Y +++ D ALS L + E E ++ ++D M A+F
Sbjct: 470 EYFQEKGWIELESKQMTEVYALLDTRFDAEALSGELHAYFKEHEASEIARIDNML--ALF 527
Query: 726 AVDVC 730
C
Sbjct: 528 ESREC 532
>gi|423688405|ref|ZP_17663208.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri SR5]
gi|371492908|gb|EHN68514.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri SR5]
Length = 638
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 197/633 (31%), Positives = 296/633 (46%), Gaps = 55/633 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+DS R GQ + I+ VL+ S+ + PTG+GKSLCYQ+PA+ILP LTLV+ PL+A
Sbjct: 6 LKETFGFDSLRGGQQQVIEKVLNGHSSAAIFPTGSGKSLCYQLPALILPNLTLVISPLLA 65
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I + S+Q EE ++ ++ G IK+L +S ER N F F
Sbjct: 66 LMKDQIAFLKSKGIAAASIDSTQTREETQAILQGVRNGEIKILMISVERLKNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT + D+
Sbjct: 125 AQITISLLVVDEAHCISEWGHNFRPDYLKLPQD--REALNIPQVLLLTATATPAVIEDMS 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
I +++ R NL +S+ + Q + + + S Y LQ + +
Sbjct: 183 KKFNIAQDDIVITGFYRSNLDISI-IPVEEEQKRSALFATLKQRPDQPSIVYVTLQQTAE 241
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+ ++++L N I K+YH+G+ R IQ F +I +VAT+AFGMG+DK D+
Sbjct: 242 N-----VAQWLQSNGIQAKAYHAGLKNDVRETIQHQFMHGEINCIVATIAFGMGVDKSDI 296
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG S+C + + L + +Y D D AI
Sbjct: 297 RQVIHFDLPKSIENYSQEIGRAGRDGLPSFCTVLANTSGLNVLENFVYGDTPDREAIQYV 356
Query: 552 LCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKVT 609
L ++ +L L K+S R+ +K TLL LEL +I + +
Sbjct: 357 LDDIYQANETWETQLLRLSKDSNVRQLPLK-----TLLVYLELKKIIQAKYSYYADYRFK 411
Query: 610 CTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK 669
+ + ++ + V+TI + S + + D + V L
Sbjct: 412 TLIPINDIIAKFQTERQQFVSTIFQCSPKAKTWHTVDFDALWMGFRGERKRVIAALDYFN 471
Query: 670 MRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDV 729
+G I E K Y ++ LS + E ++ ++ M +D
Sbjct: 472 EQGWIELESKQMTEVYQVLNKVESTHVLSQEQHQLFKNKEQSEINRIHAM-------LDF 524
Query: 730 CEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQ--------------SSPFLRAD 775
E CL + YF + + P K G SS F+ D
Sbjct: 525 FET---------KSCLSHALAHYFA---DFNAPEKCGHCSACRSEAAVLPRSSSHFIADD 572
Query: 776 --IKVFLQSNLNAKFTPRA---VARILHGIASP 803
+K + Q N+ P A AR L GI +P
Sbjct: 573 ENVKAWCQELQNSSKEPLANAVFARFLCGIPTP 605
>gi|383866069|ref|XP_003708494.1| PREDICTED: ATP-dependent DNA helicase Q4-like [Megachile rotundata]
Length = 1494
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 214/687 (31%), Positives = 355/687 (51%), Gaps = 78/687 (11%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLV 251
++G+ SFR GQ +AI +L +ST++ L TG+GKSLCYQ+PA + +TLV+ PLV
Sbjct: 795 MFGHTSFRPGQEKAIMRILSGQSTLVTLSTGSGKSLCYQLPAYLYSQHFTCITLVISPLV 854
Query: 252 ALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FL 307
+LM DQ+ +P + L ++Q + +++++ G + +L +SPE + + F
Sbjct: 855 SLMDDQVTGVPLFLSAACLHTNQTEKVRNNVMQMVKKGKVNILLISPEAVVAGEKSTGFG 914
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I+ +DEAHC+S+WSHNFRPSY+ + +L+ +L V+ +LA+TATAT TT+
Sbjct: 915 ALLRQLPPIAFACIDEAHCISQWSHNFRPSYL-MVCRVLKEKLGVKTVLALTATATKTTM 973
Query: 368 RDVMSALEI--PLSNLIQKAQLRDNLQLSVSLSGNNR-------QNERSAYVDEVFSFHR 418
++S L + + +I + NL L+VS + ++ER D + +
Sbjct: 974 ESIVSHLGLHDGMEGVISDIPMPRNLVLTVSKDDHRDHALIDLLKSERFKVCDSIIVY-- 1031
Query: 419 SSKHYYILQISG----KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
++ ++I+G + + S+Y S ++YH+G+ A R +Q+ F + +IR
Sbjct: 1032 CTRREECVRIAGILRVSLQDPNNFSKYNAKLSPIAEAYHAGLSAYRRKTVQKAFMNGQIR 1091
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL---DDITY 531
+VVATVAFGMGL+K D+ AVIHY++P + E YVQE+GRAGRDG +++CH+FL +D
Sbjct: 1092 IVVATVAFGMGLNKPDIRAVIHYNMPGTFENYVQEVGRAGRDGEIAHCHMFLNSTEDSDK 1151
Query: 532 FRLRSLMYSDGVDEYAINKFLCQVFTNGMNSH-----------GKLCSLVKESASRKFDI 580
+ LR +Y++GVD ++I + L +VF S G ++ + DI
Sbjct: 1152 WELRRHIYANGVDRHSIRRLLQKVFVPCSCSKIRIKDANYRCPGHEVAIPIDETVIALDI 1211
Query: 581 KEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH----------KTTPTLLADKDKMVA 630
E + TLL LEL +Y+ +L + V ++ + +++P L +A
Sbjct: 1212 SAETISTLLCYLELHPKRYITVLSSVYVRARVSSYGGPQALKQAAQSSPPLAM----AIA 1267
Query: 631 TILKKSETKQGQYVFDIPT--VANSIGATTIDVSNQLLNLKMRG-EITYELKDPAYCYTI 687
L+ + V + P VA++IG + V + L NL+ + T + + Y
Sbjct: 1268 LDLQNGISHDNDSVIEFPVVDVASAIGWDSGVVKSHLKNLEWKTVNGTSKRSSISVRYDT 1327
Query: 688 ----VEVPSDFC------ALSAHLTKWLSEVENCKVRKLDRM---FHAAVFAVDVCEKTH 734
V+ P D AL A + + S+ E +R+L+ + H F++ K
Sbjct: 1328 LGLRVKAPGDLTDEELDEALEALVDRARSQ-ETAALRQLETISVTLHK--FSMPSIAKCL 1384
Query: 735 GCNGSLHTPC--LQKNILDYFRGDDNCDVPNKIGQ----SSPFLRADIKVFLQSNLNAKF 788
N + L+ I DYF G D+ + I Q + + D++ + S + F
Sbjct: 1385 ELNDEVTNKSDELKAIIRDYFEGKVLVDI-DAIQQVKVENEAQIACDVRNLIVSYRDNNF 1443
Query: 789 TPRAVARILHGIASPAYPSTIWSKTHF 815
T RAVARI HGI SP YP+ W+K F
Sbjct: 1444 TGRAVARIFHGIQSPNYPAYAWNKCRF 1470
>gi|431929055|ref|YP_007242089.1| ATP-dependent DNA helicase, RecQ-like protein [Pseudomonas stutzeri
RCH2]
gi|431827342|gb|AGA88459.1| ATP-dependent DNA helicase, RecQ-like protein [Pseudomonas stutzeri
RCH2]
Length = 641
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 180/541 (33%), Positives = 275/541 (50%), Gaps = 25/541 (4%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GYD FR GQ +AI+ V+ +S + PTG+GKSLCYQ+PA++LP LTLVV PL+ALM D
Sbjct: 10 FGYDRFRTGQEQAIRAVVAGRSVAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLALMQD 69
Query: 257 QL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312
QL RH I + S+Q E+ +ET+ + G +K+L +S ER N F + F +
Sbjct: 70 QLAFLHRH---GIAAASIDSAQSREQASETMARAKSGELKILMISVERLKNERFRN-FIS 125
Query: 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMS 372
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATAT + D+
Sbjct: 126 QVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQVLLLTATATPPVIADMQG 183
Query: 373 ALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
I +++ R NL L V +SG N+Q ++ + +S + + K
Sbjct: 184 KFAIAADDVVTTGFYRPNLNLLVEPVSGFNKQRRLVEWLGD-----KSGQPTIVYVTQQK 238
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E I+ +L +YH+G+ + R IQ F + ++ +VAT+AFGMG+DK D+
Sbjct: 239 TAEQ--IAEHLAQRGFPASAYHAGMAHELRESIQRRFMAGELNCIVATIAFGMGIDKADI 296
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
V+HY LP+S+E Y QEIGRAGRDG+ S C + + + L++ +Y D + I
Sbjct: 297 RNVVHYDLPKSVENYSQEIGRAGRDGQPSDCLVLANRDSLSVLQNFVYGDTPEREGIRCV 356
Query: 552 LCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKVT 609
L ++ G G L+ S + +I++ + TLL LEL I E +
Sbjct: 357 LDELLQAGA---GGQWELMLNQLSDQSNIRQLPLKTLLVQLELRGIIAPRFAYFAEYRFK 413
Query: 610 CTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK 669
L ++ + V I+ S + D + GA V L +
Sbjct: 414 YLLEPEALVAKFEGERRQFVEAIVHSSARARTWCTLDFDALYQQHGADRARVVKALEYFQ 473
Query: 670 MRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDV 729
+G I E K Y +++ D ALSA L + + E ++ ++D M A+F
Sbjct: 474 EKGWIELESKQMTEVYALLDTGFDAEALSAELHAYFKQHEASEITRIDNML--ALFESAE 531
Query: 730 C 730
C
Sbjct: 532 C 532
>gi|335424314|ref|ZP_08553325.1| ATP-dependent DNA helicase RecQ [Salinisphaera shabanensis E1L3A]
gi|334889965|gb|EGM28249.1| ATP-dependent DNA helicase RecQ [Salinisphaera shabanensis E1L3A]
Length = 643
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 202/635 (31%), Positives = 310/635 (48%), Gaps = 44/635 (6%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D+ RLL+ +GY+ F+ GQ E I+ +L +S V PTG GKSLCYQ+PA+ LPG+TL
Sbjct: 2 DDQPDRLLKAYFGYERFQPGQREVIEHLLAGRSAAAVFPTGGGKSLCYQLPALALPGITL 61
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
VV PL+ALM DQ+ L I L SS E + ++ G +++L+V+PERF N
Sbjct: 62 VVSPLIALMKDQIDALSARGIAAQRLDSSLDAEGYRAVMDRLRSGELRLLYVAPERFNNE 121
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
F + +SL VDEAHC+SEW HNFRP Y++L A+ E +LA+TATAT
Sbjct: 122 RFRQTLSQLR-VSLFAVDEAHCISEWGHNFRPDYLKLVGFAKAAK--AERLLALTATATP 178
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQL-----SVSLSGNN---RQNERSAYVDEVFSF 416
L D+ L+I ++ A R NL L +V ++ R NERSA V
Sbjct: 179 AVLDDICQVLDIGADCAVRTAFYRPNLTLLFAPTTVEQRDHDLLARLNERSAGPTIV--- 235
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
Y LQ + + +++ L D ++YH+G+ ++ RS +QE F + +V
Sbjct: 236 ------YVTLQRTAEQ-----VAKQLADAGHPARAYHAGMDSEKRSVVQEWFVRSNDGIV 284
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
VAT+AFGMG+DK D+ V HY+LP+SLE Y QEIGRAGRDG + C + L +
Sbjct: 285 VATIAFGMGIDKADIRYVYHYNLPKSLENYAQEIGRAGRDGENAVCEMLACADDQNTLEN 344
Query: 537 LMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGE 596
+Y D AI+ FL +F L +L SR D++E V TLLT LEL
Sbjct: 345 FVYGDTPTAAAIDSFLHDIFAQEAEFDISLSAL-----SRMHDLRELVARTLLTYLELQ- 398
Query: 597 IQYLQLLPELKVTCTLNFHKTTPTLLAD----KDKMVATILKKSETKQGQYVFDIPTVAN 652
YL+ + + +LA + + +A +L+++ + + D+ +
Sbjct: 399 -GYLKGGTPFYASYRFRPKMASQDILARFQGPRRQFLAELLRRARKARTWFDLDVDSAVA 457
Query: 653 SIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCK 712
+ + L L + + + Y I++ P AL+A L + E +
Sbjct: 458 EMQQPRERIVAALDYLGEQHMLEVTAAGVRHRYRILQRPDSVKALAAKLYEHALRREESE 517
Query: 713 VRKLDRMFHAAVFAVDVCE--KTHGCNGSLHTPCLQKNILDYFRGDDNCDVP-NKIGQSS 769
+ +L ++ A+ D C+ G PC + +P + +
Sbjct: 518 LARLQQVL--ALIEADGCQVAALSAHFGEQREPCGHCSWC--LNDGKPVRIPARRKTEID 573
Query: 770 PFLRADIKVFLQSNLNAKFTPRAVARILHGIASPA 804
P + A+++ + + N R VAR L G++SP+
Sbjct: 574 PAVWAEMETLRRQHPNVLGPARVVARFLCGVSSPS 608
>gi|218708724|ref|YP_002416345.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus LGP32]
gi|218321743|emb|CAV17698.1| ATP-dependent DNA helicase recQ [Vibrio splendidus LGP32]
Length = 644
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 195/634 (30%), Positives = 303/634 (47%), Gaps = 51/634 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+DS R+GQ + I VL ST + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 6 LKQVFGFDSLRNGQKQVIDNVLSGHSTAAIFPTGSGKSLCYQLPALELPHLTLVISPLLA 65
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SSQ + + ++ ++ G K+L +S ER N F F
Sbjct: 66 LMKDQLSFLHSKGISAASIESSQDRQTTQQVMQSVRNGDTKILMISVERLKNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + +LN+ +L +TATATT+ ++D+
Sbjct: 125 SQVPISLLVVDEAHCISEWGHNFRPDYLKLPQ--YQKQLNIPQVLLLTATATTSVIQDMK 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
S EI ++ R NL LS+ + E V S + + + Q +
Sbjct: 183 SKFEIDEERVVVTGFYRQNLDLSIQPCEQTSKLETLCNVVNQASLAPTIVYVTLQQTA-- 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+++++ L + ++ +YH+G+ ++R IQ F ++ + +VAT+AFGMG+DK ++
Sbjct: 241 ----EMVAQQLRNAGVNAVAYHAGLKPENRDAIQHQFMNDDVNCIVATIAFGMGVDKSNI 296
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + ++ D D +I
Sbjct: 297 RRVIHFDLPKSIENYSQEIGRAGRDGQPSECILLANKYGLSTLENFVFGDTPDNISIQTV 356
Query: 552 LCQVFTNG--MNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQ-YLQLLPELK 607
L +++ N S ++ SR+ +I++ + TLL LE+ G I+ + K
Sbjct: 357 LKEIYENQNIAASGTNQWEIMLNQLSRESNIRQLPLKTLLVYLEIEGVIEPKYSYFADYK 416
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
+ T +++ V I + S + D + A V +
Sbjct: 417 FKFIRTKQQITEQFQSERRHFVEAIFQCSPQARVWCQVDFDALWTHFQADRQRVIAAIDY 476
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAV 727
+G I E K Y I D LS LT+ EN ++ +L++M + F
Sbjct: 477 FNEQGWIELESKQITDVYAIHNTTEDMMQLSERLTELFKAKENSEINRLNQML--SFFEA 534
Query: 728 DVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS---------------PFL 772
D CL + YF D P K G S P
Sbjct: 535 DT--------------CLSSRLASYFADD---KAPAKCGHCSVCRGQVAILPTVDVEPID 577
Query: 773 RADIKVFLQSNLNAK---FTPRAVARILHGIASP 803
+ + ++A T A+ R L GIA+P
Sbjct: 578 DETVMTWTHEFISASQQLITDEAITRFLCGIATP 611
>gi|146280691|ref|YP_001170844.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
stutzeri A1501]
gi|145568896|gb|ABP78002.1| ATP-dependent DNA helicase domain protein [Pseudomonas stutzeri
A1501]
Length = 641
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 188/584 (32%), Positives = 285/584 (48%), Gaps = 42/584 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
LR +GYD FR GQ +AI+ V+ +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 6 LRQTFGYDGFRAGQEQAIRAVVAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 65
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
LM DQL RH I + S+Q E+ ++T+ + G +K+L +S ER N F
Sbjct: 66 LMQDQLAFLHRH---GIAAASIDSAQSREQTSQTMARAKSGELKILMISVERLKNERFRH 122
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F + ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATAT +
Sbjct: 123 -FISQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQVLLLTATATPPVIA 179
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ + I +++ R NL L V +SG N+Q ++ + R+ + +
Sbjct: 180 DMQAKFSIAADDVVTTGFYRPNLNLLVEPVSGFNKQRRLVEWLTD-----RAGQPTIVYV 234
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
K E I+ +L +YH+G+ + R IQ F + ++ +VAT+AFGMG+D
Sbjct: 235 TQQKTAEQ--IAEHLAQRGFPASAYHAGMAHELRESIQRRFMAGELNCIVATIAFGMGID 292
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+HY LP+S+E Y QEIGRAGRDG+ S C + + + L++ +Y D +
Sbjct: 293 KADIRNVVHYDLPKSVENYSQEIGRAGRDGQPSDCLVLANRDSLSVLQNFVYGDTPEREG 352
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPE 605
I L ++ G G L+ S + +I++ + TLL LEL I E
Sbjct: 353 IRCVLDELLQAGA---GGQWELMLNQLSEQSNIRQLPLKTLLVQLELRGIIAPRFAYFAE 409
Query: 606 LKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQL 665
+ L ++ + V I+ S + D + GA V L
Sbjct: 410 YRFKYLLEPEALVAKFEGERRQFVEAIVDTSARARTWCTLDFEALYGQHGADRARVVKAL 469
Query: 666 LNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVF 725
+ +G I E K Y + D ALS L + + E ++ ++D M A+F
Sbjct: 470 EYFQEKGWIELESKQMTEVYALFNQRFDAEALSGELHAYFKQHEASEITRIDNML--ALF 527
Query: 726 AVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + + YF GD P + G S
Sbjct: 528 E--------------SAECLSQRLAAYF-GDRQ--APQRCGHCS 554
>gi|338536056|ref|YP_004669390.1| ATP-dependent DNA helicase RecQ [Myxococcus fulvus HW-1]
gi|337262152|gb|AEI68312.1| ATP-dependent DNA helicase RecQ [Myxococcus fulvus HW-1]
Length = 663
Score = 273 bits (697), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 209/644 (32%), Positives = 316/644 (49%), Gaps = 51/644 (7%)
Query: 182 DEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTML-VLPTGAGKSLCYQIPAMIL 240
D A ++ +LR +G FR GQ E I+ +L ++ L V PTG GKSLCYQ+PA++L
Sbjct: 17 DGARRGSIDTVLRERFGLTDFRPGQREVIEALLGPRAAALAVFPTGGGKSLCYQLPALLL 76
Query: 241 PGLTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
G+T+VV PL+ALM DQ+ L I L +S +E E + ++ G++K+L+V+PE
Sbjct: 77 EGITVVVSPLIALMKDQIDALTRQGIRAARLDASLSVDESREVTQALREGSLKLLYVAPE 136
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
RF N F ++ A I+L VDEAHCVSEW HNFRP Y++L A RA L+ E ILA+T
Sbjct: 137 RFNNERFTALLRALR-IALFAVDEAHCVSEWGHNFRPDYLKL-AQAARA-LSAERILALT 193
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATAT + +RD+ IP N + R NL L + +R A + E S
Sbjct: 194 ATATPSVVRDICQGFGIPEENAVVTGFYRRNLALETT---PVHAEDRDALLLERLSSREP 250
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
I+ ++ K + ++ +L + +YH+G+ + R R+QE + ++ +VVAT
Sbjct: 251 GP--TIVYVT-KQKTAERVAAFLSTEGLPANAYHAGLESDVRERVQEEWMASTNGIVVAT 307
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSL 537
+AFGMG+DK DV AV HY+LP+ LE Y QEIGRAGRDG S LF DD++ L +
Sbjct: 308 IAFGMGIDKADVRAVYHYNLPKGLESYSQEIGRAGRDGAPSVVELFACPDDVS--SLENF 365
Query: 538 MYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
Y D AI + ++ G L +L S + D+++ V+ T LT LEL +
Sbjct: 366 AYGDTPTPEAIQGLVTELLGMGPELSVDLFAL-----SSRHDVRQLVLRTALTYLELEGV 420
Query: 598 --QYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIG 655
Q KV ++ ++ + + + +++ + Y D VA S+
Sbjct: 421 LRQGTPYYAGYKVQPLVSLDALVGRFQGERVQFLRDVFAQAKKGRTWYSLDPAEVAGSLR 480
Query: 656 ATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRK 715
V L L+ +G + ++ DP +T + D AL+ L + + E +V +
Sbjct: 481 QPRERVVRSLEYLEEQGLVLLQVSDPRQRFTRLRRQEDPKALTDLLDRRFQQREAQEVAR 540
Query: 716 LDRMFHAAVFAVDVCEKTH-GCNGSL---------HTPCLQKNILDYFRGDDNCDVPNKI 765
+ + TH GC + PC + R + +P
Sbjct: 541 VQDVLRLV---------THKGCQSNALVAHFGQQREQPC---GHCTFCRTGEAQVLPAV- 587
Query: 766 GQSSPFLRADIKVFLQSNLNAKFT-----PRAVARILHGIASPA 804
+ P L A + V L AK PR AR L G++SPA
Sbjct: 588 -RRKPALPAGLDVVAFRALAAKHPDALGHPRQAARFLCGLSSPA 630
>gi|392551222|ref|ZP_10298359.1| RecQ familyATP-dependent DNA helicase [Pseudoalteromonas spongiae
UST010723-006]
Length = 645
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 205/658 (31%), Positives = 316/658 (48%), Gaps = 75/658 (11%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
L + L+ + +D FR+GQ + I +L S++ V PTG+GKSLCYQ+ A++LP LTLVV
Sbjct: 6 LQQALKHHFNFDVFREGQGQTISQLLAGHSSLAVFPTGSGKSLCYQLTALLLPHLTLVVS 65
Query: 249 PLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL+ALM DQ+ L I L SS + + + ++ G IK+L VS ERF N F
Sbjct: 66 PLLALMKDQVDFLNSKGIAAASLDSSLDKDSYFDVVNRVRQGEIKILMVSVERFKNERFR 125
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
F + IS++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT
Sbjct: 126 Q-FINSVAISMLVVDEAHCISEWGHNFRPDYLKLPQ--YREELNIPLVLLLTATATKKVK 182
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSV--SLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+D+ + +I +++Q R NL LSV +++G Q VD V S Y
Sbjct: 183 QDMAAKFQIQQQHIVQTGFYRHNLDLSVIPAVAGQKTQQ----LVDVVKSQQGCGIVYVT 238
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
LQ + + ++ L D I+ +YH+G+ A+ R IQ F + +VVVAT+AFGMG
Sbjct: 239 LQQTAES-----VATILADQGINAVAYHAGLGAEQRQMIQNQFMQSDNQVVVATIAFGMG 293
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGV 543
+DK D+ V+HY LP+S+E Y QEIGRAGRDG S C + LDD+T L + +Y D
Sbjct: 294 IDKSDIRFVVHYDLPKSIENYSQEIGRAGRDGNPSNCFVLGNLDDVT--TLENFVYGDTP 351
Query: 544 DEYAINKFLCQVFTNGMNS--HGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQ 601
+ ++ +F + ++ ++ SL + + R+ +K ++ L L G+ Y
Sbjct: 352 EATSLQRFFNDIREQSQDNLWQCQIYSLSQTTNIRQLTLKTVLVQCELLGLLTGKYSY-- 409
Query: 602 LLPELKVTCTLNFHKTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGAT 657
E + F ++LA ++ + + ++ K+ D+ A G
Sbjct: 410 -FAEYRYF----FKSDKASVLAKFNPERQAFLNQLFDATDFKKKWGSIDVSEFAMQSGLD 464
Query: 658 TIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLD 717
V + L L +G+I E K Y + D L + LT + + E +V +++
Sbjct: 465 RSRVLSALEYLHEQGDIELESKQLVDVYAVNSSLLDNNELLSQLTDYFASNEKSEVARIN 524
Query: 718 RMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADI- 776
M F +D CL N+ YF D+ P + G S R +
Sbjct: 525 TMLR--YFQLDT--------------CLSYNLARYF---DDQGAPQQCGHCS-VCRGQVA 564
Query: 777 --------KVFLQSNLNAKFTPRAV--------------ARILHGIASPAYPSTIWSK 812
K +++ +N TP + AR L G+ P + SK
Sbjct: 565 KLQYIDTQKQLIENQINGYLTPLDIALNGQGFELSDTLAARFLTGLTQPVFTKVKASK 622
>gi|447919434|ref|YP_007400002.1| putative ATP-dependent DNA helicase [Pseudomonas poae RE*1-1-14]
gi|445203297|gb|AGE28506.1| putative ATP-dependent DNA helicase [Pseudomonas poae RE*1-1-14]
Length = 645
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 195/585 (33%), Positives = 293/585 (50%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ EA+ VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LQQVFGYPQFRSGQQEAVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q E+ E + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLGFLQRHGISAGSIDSAQSREDANEVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QSVQISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I S++I R NL L V + G N++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAPSDVITTGFYRPNLNLLVEPVGGVNKRQRLVQWMSE--RTRQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L N I ++YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLNRNGIQAEAYHAGLPHDKREGIQQRFMGGRSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQEGIRR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ S G+ L++ S S +I+E + TLL LEL + + P
Sbjct: 355 VLEEL--QASRSEGQWEFLLR-SLSDHSNIRELPLKTLLVQLELKGV----IAPRYAFYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + VA I++ + + D + GA V
Sbjct: 408 EYRFKYLIEPQALLARFSGERQQFVAAIIQVCKRAKTWATVDFDVLYQQHGAERNRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G I E K Y+++ D LSA L + E +V ++ M +
Sbjct: 468 LDYFQEQGLIELESKQMTEVYSLLNTDFDPQVLSAELYTGFKQHEVTEVARIHAMLD--L 525
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA + CL + YF GDD P + G S
Sbjct: 526 FATEY--------------CLGHRLAQYF-GDDQA--PQRCGNCS 553
>gi|417948406|ref|ZP_12591552.1| ATP-dependent DNA helicase recQ [Vibrio splendidus ATCC 33789]
gi|342809823|gb|EGU44926.1| ATP-dependent DNA helicase recQ [Vibrio splendidus ATCC 33789]
Length = 644
Score = 271 bits (694), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 194/638 (30%), Positives = 312/638 (48%), Gaps = 59/638 (9%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+DS R+GQ + I VL ST + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 6 LKQVFGFDSLRNGQKQVIDNVLSGHSTAAIFPTGSGKSLCYQLPALELPHLTLVISPLLA 65
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SSQ + + ++ ++ G K+L +S ER N F F
Sbjct: 66 LMKDQLAFLHSKGISAAAIESSQDRQTTQQVMQSVRSGDTKILMISVERLKNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + +LN+ +L +TATATT+ ++D+
Sbjct: 125 SQVPISLLVVDEAHCISEWGHNFRPDYLKLPQ--YQKQLNIPQVLLLTATATTSVIQDMK 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI-LQISG 430
S +I S ++ R NL LS+ + N+ + + V ++ Y+ LQ +
Sbjct: 183 SKFDIDESRVVVTGFYRQNLDLSIQPC--EQANKLESLCNVVNQAAQAPTIVYVTLQQTA 240
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+++++ L + ++ +YH+G+ ++R IQ+ F ++ + +VAT+AFGMG+DK +
Sbjct: 241 -----EMVAQQLRNAGVNAVAYHAGLKPENRDVIQQQFMNDDVHFIVATIAFGMGVDKSN 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + ++ D D +I
Sbjct: 296 IRRVIHFDLPKSIENYSQEIGRAGRDGQASECILLANKDGLSTLENFVFGDTPDNISIQA 355
Query: 551 FLCQVFTNGM--NSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L +++ N S ++ SR+ +I++ + TLL LE+ + + P+
Sbjct: 356 VLREIYENQNIGQSGTNQWEIMLNQLSRESNIRQLPLKTLLVYLEIEGV----IEPKYSY 411
Query: 609 TCTLNFHKTTP------TLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F P ++ V I + S + D + A V
Sbjct: 412 FADYKFKFIRPKQQICEQFQGERRNFVEAIFQCSPQARVWCQVDFEALWTHFQADRQRVI 471
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
+ +G I E K Y I D LS LT+ EN ++ +L++M
Sbjct: 472 AAIDYFNEQGWIELESKQITDVYAIHNTSEDMLQLSERLTELFKAKENSEINRLNQML-- 529
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD------NCDVPNKIGQSSPFLRADI 776
+ F D CL + YF ++ +C V GQ + D+
Sbjct: 530 SFFEADT--------------CLSSRLASYFADNEAPKACGHCSVCR--GQVATLPSVDV 573
Query: 777 K--------VFLQSNLNAK---FTPRAVARILHGIASP 803
+ ++ ++A T A+ R L GIA+P
Sbjct: 574 ESVDDETVMTWINEFISASQQLITDEAITRFLCGIATP 611
>gi|440740024|ref|ZP_20919523.1| putative ATP-dependent DNA helicase [Pseudomonas fluorescens
BRIP34879]
gi|440378350|gb|ELQ14973.1| putative ATP-dependent DNA helicase [Pseudomonas fluorescens
BRIP34879]
Length = 645
Score = 271 bits (694), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 196/585 (33%), Positives = 293/585 (50%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ EA+ VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LQQVFGYPQFRSGQQEAVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q E+ E + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLGFLQRHGISAGSIDSAQSREDANEVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISLVVVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QSVQISLVVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I S++I R NL L V +SG N++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAPSDVITTGFYRPNLNLLVEPVSGVNKRQRLVQWMSE--RTRQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L N I ++YH+G+ R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLNRNGIQAEAYHAGLAHDKREGIQQRFMGGRSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQEGIRR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ S G+ L++ S S +I+E + TLL LEL + + P
Sbjct: 355 VLEEL--QASRSEGQWEFLLR-SLSDHSNIRELPLKTLLVQLELKGV----IAPRYAFYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + VA I++ + + D + GA V
Sbjct: 408 EYRFKYLIEPQALLARFSGERQQFVAAIIQVCKRAKTWATVDFDVLYQQHGAERNRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G I E K Y+++ D LSA L + E +V ++ M +
Sbjct: 468 LDYFQEQGLIELESKQMTEVYSLLNTDFDPQVLSAELYTGFKQHEVTEVARIHAMLD--L 525
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA + CL + YF GDD P + G S
Sbjct: 526 FATEY--------------CLGHRLAQYF-GDDQA--PQRCGNCS 553
>gi|171915835|ref|ZP_02931305.1| superfamily II DNA and RNA helicases, RecQ-like protein
[Verrucomicrobium spinosum DSM 4136]
Length = 648
Score = 271 bits (694), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 202/652 (30%), Positives = 321/652 (49%), Gaps = 84/652 (12%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+D+FR+GQ + I+ +L +S++ V PTG GKSLCYQ+PA+++ GLTLV+ PL+A
Sbjct: 9 LKQYFGHDAFREGQEQVIEALLAGRSSLAVFPTGGGKSLCYQLPALLMDGLTLVISPLIA 68
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I L S+ +EV + + ++ G +K+L+++PER ++ F+ +
Sbjct: 69 LMKDQVEALRAKNIPAARLDSTLSGDEVGQVLGDMRSGRLKLLYIAPERLMSESFMERLS 128
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+ +DE+HC+SEW HNFRP Y+RL A + R +L + +LA+TATAT D+
Sbjct: 129 RVK-ISLLAIDESHCISEWGHNFRPEYLRL-AEVAR-KLQLHPVLALTATATPGVAEDIR 185
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS---------LSGNNRQNERSAYVDEVFSFHRSSKH 422
I + IQ LR NL + ++ L Q ER H +
Sbjct: 186 RTFRIAPEDHIQTTFLRRNLAIQITPAPVKQRLALLTQKLQEER----------HFPAIV 235
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y LQ + + T YL + ++YH+G+P R+ +Q+ F S + V+VAT+AF
Sbjct: 236 YVTLQQTAEEVAT-----YLGKAGVHARAYHAGLPDDHRNEVQDAFMSGGVDVIVATIAF 290
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYS 540
GMG+DK D+ +V HY+LP+SLE Y QEIGRAGRDG+ S+C + DD+ L++ +Y
Sbjct: 291 GMGIDKADIRSVYHYNLPKSLENYQQEIGRAGRDGQGSHCEMLACADDLVV--LQNFVYG 348
Query: 541 DGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYL 600
D A+ + + + G + + + DI+ V+ T+LT LEL ++ L
Sbjct: 349 DTPTPAALRQVVDHLLRQGHE-----FDISRYDLAHSTDIRPLVLETVLTYLELDQV--L 401
Query: 601 QLLPELKVTCTLNFHKTTPTLLADKDKMVATILKK---SETKQGQYV-FDIPTVANSIGA 656
L + F LL+ L+K S + ++V ++ A +IG
Sbjct: 402 TPLGAFYSGYQVRFVHGEARLLSGHKPERQEFLRKLFNSGKRGTRWVTLNVDESAAAIGE 461
Query: 657 TTIDVSNQLLNLKMRGEITYELKDPAYCYTIVE--VPSDFCALSAHLTKWLSEVENCKVR 714
T + L L+ G+I + + + + + D A+ + +E E
Sbjct: 462 TRERILKALTYLEESGDIECKPTGLRHRFRLCDDATKRDPGAICQRMQTLFAERERKDAG 521
Query: 715 KLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD---------NCDV---- 761
+L+R+ AV C +++L YF G++ NC
Sbjct: 522 RLERVLELAV----------------DPSCTTRHLLRYF-GEEMPSDCGTCGNCRSGQAG 564
Query: 762 ----PNKIGQSS-PFLRAD----IKVFLQSNLNAKFTPRAVARILHGIASPA 804
P I QS P + + I+ + L PR +AR L GIASPA
Sbjct: 565 NHLEPKVIPQSPVPSITVEHLQRIQELQRQGLAPLRAPRQLARFLCGIASPA 616
>gi|407700968|ref|YP_006825755.1| RecQ domain-containing protein [Alteromonas macleodii str. 'Black
Sea 11']
gi|407250115|gb|AFT79300.1| RecQ domain-containing protein [Alteromonas macleodii str. 'Black
Sea 11']
Length = 663
Score = 271 bits (694), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 202/664 (30%), Positives = 319/664 (48%), Gaps = 77/664 (11%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
SD N+ L+ ++G+ +FR+GQ E ++ +L ST+ + PTG+GKSLCYQ A LP LT
Sbjct: 3 SDPNI---LQRLFGFSAFREGQKEVVESLLGGHSTLAIFPTGSGKSLCYQFVATQLPHLT 59
Query: 245 LVVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
LVV PL+ALM DQL L I + S+ PE+ + + ++ G K+L VS ERF N
Sbjct: 60 LVVSPLLALMKDQLEFLHSKGIAAASIDSTLTPEQNKQVMSDVRSGQCKILMVSVERFKN 119
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
F F + +S++VVDEAHC+SEW HNFRP Y++L A + LN+ +L +TATAT
Sbjct: 120 ERFRQ-FIESVQVSMLVVDEAHCISEWGHNFRPDYLKLPA--YQKELNIPLVLLLTATAT 176
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D+ + +I +N+IQ R NL L V +N+ A ++E+ + Y
Sbjct: 177 KKVKEDMAARFDIAPANIIQTGFYRPNLNLHVRPVHEPYKNQ--ALLEEIQKQQGAGIVY 234
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
LQ S + ++R+L + K+YH+G+ + R IQ+ F SNK++VVVAT+AFG
Sbjct: 235 VTLQNSAEE-----VARFLQQQGFAAKAYHAGLDNEVRQSIQQDFMSNKLQVVVATIAFG 289
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK D+ VIHY LP+S+E Y QEIGR GRDG+ + C + + + + +Y D
Sbjct: 290 MGIDKSDIRFVIHYDLPKSIENYSQEIGRGGRDGKAANCTVLANLDGLVTIENFVYGDTP 349
Query: 544 DEYAINKFLCQVFTNG---MNSHGKLCSLVK------------ESASRKFDIKEEVMLTL 588
D+ AI + + + + +NS + S S S +I++ + TL
Sbjct: 350 DKSAIQRVIDDIKSQAPAHINSAAQSSSTANGENGIYQWETQINSLSSASNIRQLPLKTL 409
Query: 589 LTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLA----DKDKMVATILKKSETKQGQYV 644
L LEL ++ ++ L F T+L ++ + + + S K+ +
Sbjct: 410 LVQLELADV--IRPLYAYFAEYKFRFISEKATILGLFSEERARFLDAVFTHSNMKKVWGI 467
Query: 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKW 704
D ++ GA V L L I + Y + L+ L ++
Sbjct: 468 VDFDSIYQHYGAERARVVAALEYLHEHNHIELASRLITDVYRVDYEKLQAADLAEKLARY 527
Query: 705 LSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNK 764
+E E +V ++ + + F ++ CL N+ YF D+ VP +
Sbjct: 528 FAENERKEVERIAAL--VSFFELNT--------------CLSYNLSAYF---DDTQVPKE 568
Query: 765 IGQ-------------SSPFLRADIK------VFLQSNLNAKF----TPRAVARILHGIA 801
G S+P + + L+++LN KF T R L G+
Sbjct: 569 CGHCSVCEGNVAKLSYSTPIPKPNFDQVSQAMTALKTHLNGKFEGPITASIYCRFLTGMT 628
Query: 802 SPAY 805
P +
Sbjct: 629 MPLF 632
>gi|444909512|ref|ZP_21229703.1| ATP-dependent DNA helicase, RecQ family [Cystobacter fuscus DSM
2262]
gi|444720461|gb|ELW61245.1| ATP-dependent DNA helicase, RecQ family [Cystobacter fuscus DSM
2262]
Length = 640
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 199/632 (31%), Positives = 299/632 (47%), Gaps = 49/632 (7%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+G+ FR+GQ + +L+ +S + + PTGAGKSLCYQ+PA++L GLTLV+ PL+
Sbjct: 7 VLQSVFGFSGFREGQEPVVSRLLEARSVLAIFPTGAGKSLCYQLPALMLEGLTLVISPLI 66
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I L S+ PEE+ + ++ G +K+L+++PER N FL
Sbjct: 67 ALMKDQIDFLQGRGIPAARLDSTLGPEELRQLYADLKAGTLKLLYIAPERLANERFLQTL 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
IS++ VDEAHC+SEW HNFRP YM+L A L R L VE +LA+TATAT + RD+
Sbjct: 127 RGVR-ISMLAVDEAHCMSEWGHNFRPDYMKL-APLART-LKVERVLALTATATPSVARDI 183
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
A I +++Q R NL L VS + ++ Y LQ +
Sbjct: 184 AGAFGIAPGDVVQTGFHRPNLTLHVSPTPGGDARRELLLSRLRSRPRGATIVYVTLQRTA 243
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ +R+L D+ +S ++YH+G+ + R +Q+ F + VVVAT+AFGMG+DK D
Sbjct: 244 EE-----TARFLTDHGLSARAYHAGLAPEVRHEVQDWFMGSADAVVVATIAFGMGIDKSD 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ AV H +LP+SLE Y QEIGRAGRDG+ S C L L + Y D A+
Sbjct: 299 IRAVYHCNLPKSLENYAQEIGRAGRDGQPSDCELLAAREDVVVLENFTYGDTPTPEAVTG 358
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L V G L L S+ D++ V+ TL+T LEL + E K
Sbjct: 359 VLEHVLGQGDTFDVSLHEL-----SQSHDVRPLVIETLMTYLELDGLLESTGPFYTEYKF 413
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
+ A + + + +E K+ + + ++ +G + L L
Sbjct: 414 QALRPLDEVFAGFDAPRADFLRRVFALAEAKRTWSLLKLDDISRKLGEPRARIIAALNYL 473
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G + ++ Y T+ E ++R V
Sbjct: 474 EEQGALKLQVTGVRQGY--------------RRTRGDVEAATLTRTMIERFDERERRDVR 519
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDD------NCDV-----PN---KIGQSSPFLRA 774
+ G H C + +L YF G+D +CD P + +P R
Sbjct: 520 RLRQVLDFAG--HEGCRTRFLLTYF-GEDLEADCGHCDWCAGERPGPLPALAVPAPGERE 576
Query: 775 --DIKVFLQSNLNAKFTPRAVARILHGIASPA 804
+K A +PR +AR L GIASP+
Sbjct: 577 VERLKRLRAERHEALASPRQLARFLCGIASPS 608
>gi|172087826|ref|YP_207114.2| ATP-dependent DNA helicase RecQ [Vibrio fischeri ES114]
gi|171902408|gb|AAW88226.2| ATP-dependent DNA helicase RecQ [Vibrio fischeri ES114]
Length = 638
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 196/633 (30%), Positives = 297/633 (46%), Gaps = 55/633 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+DS R GQ + I+ VL+ S+ + PTG+GKSLCYQ+PA+ILP LTLV+ PL+A
Sbjct: 6 LKETFGFDSLRGGQQQVIEKVLNGHSSAAIFPTGSGKSLCYQLPALILPNLTLVISPLLA 65
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I + S+Q EE ++ ++ G IK+L +S ER N F F
Sbjct: 66 LMKDQIAFLKSKGIAAASIDSTQTREETQAILQGVRNGEIKILMISVERLKNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT + D+
Sbjct: 125 AQINISLLVVDEAHCISEWGHNFRPDYLKLPQD--REALNIPQVLLLTATATPAVIEDMS 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+I +++ R NL +S+ + Q + + + S Y LQ + +
Sbjct: 183 KKFDIAQDDIVITGFYRSNLDISI-IPVEEEQKRSALFATLKQRPDQPSIVYVTLQQTAE 241
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+ ++++L N I K+YH+G+ R IQ F +I +VAT+AFGMG+DK D+
Sbjct: 242 N-----VAQWLQSNGIQAKAYHAGLKNDVRETIQYQFMHGEINCIVATIAFGMGVDKSDI 296
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG S+C + + L + +Y D D AI
Sbjct: 297 RQVIHFDLPKSIENYSQEIGRAGRDGLPSFCTVLANTSGLNVLENFVYGDTPDREAIQYV 356
Query: 552 LCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKVT 609
L ++ +L L K+S R+ +K TLL LEL +I + +
Sbjct: 357 LDDIYQANETWETQLLRLSKDSNVRQLPLK-----TLLVYLELKKIIQAKYSYYADYRFK 411
Query: 610 CTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK 669
+ + ++ + V+TI + S + + D + V L
Sbjct: 412 TLIPVNDIIAKFQTERQQFVSTIFQCSPKAKTWHTVDFDALWMGFRGERKRVIAALDYFN 471
Query: 670 MRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDV 729
+G I E K Y ++ LS + E ++ ++ M +D
Sbjct: 472 EQGWIELESKQMTEVYQVLNKVESTHVLSQEQHQLFKNKEQSEINRIHAM-------LDF 524
Query: 730 CEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQ--------------SSPFLRAD 775
E CL + YF + + P + G SS F+ D
Sbjct: 525 FET---------KSCLSHALAHYFA---DFNAPEQCGHCSACRSEAAVLPRSSSHFIADD 572
Query: 776 --IKVFLQSNLNAKFTPRA---VARILHGIASP 803
+K + Q N+ P A AR L GI +P
Sbjct: 573 ENVKAWCQELQNSSKEPLANAVFARFLCGIPTP 605
>gi|84388969|ref|ZP_00991177.1| putative ATP-dependent DNA helicase RecQ [Vibrio splendidus 12B01]
gi|84377033|gb|EAP93905.1| putative ATP-dependent DNA helicase RecQ [Vibrio splendidus 12B01]
Length = 644
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 175/543 (32%), Positives = 278/543 (51%), Gaps = 16/543 (2%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+DS R+GQ + I VL ST + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 6 LKQVFGFDSLRNGQKQVIDNVLSGHSTAAIFPTGSGKSLCYQLPALALPHLTLVISPLLA 65
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SSQ + + ++ ++ G K+L +S ER N F F
Sbjct: 66 LMKDQLSFLHSKGISAAAIESSQDRQTTQQVMQSVRNGDTKILMISVERLKNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + +LN+ +L +TATATT+ ++D+
Sbjct: 125 SQVPISLLVVDEAHCISEWGHNFRPDYLKLPQ--YQKQLNIPQVLLLTATATTSVIQDMK 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
S +I ++ R NL LS+ + E V S + + + Q +
Sbjct: 183 SKFDIDEERVVVTGFYRQNLDLSIQPCEQTSKLETLCNVVNQASLAPTIVYVTLQQTA-- 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+++++ L + ++ +YH+G+ ++R IQ F ++ + +VAT+AFGMG+DK ++
Sbjct: 241 ----EMVAQQLRNAGVNAVAYHAGLKPENRDVIQHQFMNDDVNCIVATIAFGMGVDKSNI 296
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + ++ D D +I
Sbjct: 297 RRVIHFDLPKSIENYSQEIGRAGRDGQPSVCILLANKYGLSTLENFVFGDTPDNISIQAV 356
Query: 552 LCQVFTNG--MNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQ-YLQLLPELK 607
L +++ N + + ++ SR+ +I++ + TLL LE+ G I+ + K
Sbjct: 357 LKEIYENQNIVAAGSNQWEIMLNQLSRESNIRQLPLKTLLVYLEIEGVIEPKYSYFADYK 416
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
+ T ++ V I + S + D + V +
Sbjct: 417 FKFVRPKQQITEQFQGERRHFVEAIFQCSPQARVWCQVDFDALWTHFQTDRQRVIAAIDY 476
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAV 727
+G I E K Y I D LS LT+ E EN ++ +L++M + F
Sbjct: 477 FNEQGWIELESKQITDVYAIHNTSEDMMQLSERLTELFKEKENSEINRLNQML--SFFEA 534
Query: 728 DVC 730
D C
Sbjct: 535 DTC 537
>gi|333902200|ref|YP_004476073.1| RecQ familyATP-dependent DNA helicase [Pseudomonas fulva 12-X]
gi|333117465|gb|AEF23979.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas fulva 12-X]
Length = 641
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 182/546 (33%), Positives = 280/546 (51%), Gaps = 27/546 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+D R GQ + I VL +S + PTG+GKSLCYQ+PA+ LP LTLVV PL+A
Sbjct: 4 LKRVFGFDQLRPGQEKVISAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVVSPLLA 63
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q E+V+ET+ + G +K+L +S ER N F + F
Sbjct: 64 LMQDQLAFLHRHGISAGSIDSAQSREQVSETMTKAKAGELKILMISVERLKNERFRN-FI 122
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + + +L +TATAT + D+
Sbjct: 123 SEVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFAIAQVLLLTATATPPVIADMQ 180
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I +++ R NL L V ++G ++Q ++ S Y Q +
Sbjct: 181 KKFAIADEDVVTTGFYRPNLNLLVEPVAGRDKQRRLEQWLGA--KAGEPSIVYVTQQKTA 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ L +SV +YH+G+ + R IQ F + ++ +VAT+AFGMG+DKRD
Sbjct: 239 EQ-----VAEQLSQQGLSVSAYHAGMGHEVREAIQRRFMAGELGCIVATIAFGMGIDKRD 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG +S C + + + L + +Y D + I +
Sbjct: 294 IRNVVHFDLPKSVENYSQEIGRAGRDGEVSDCLVLANRDSLNVLENFVYGDTPELSGIVR 353
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ NSHG + + S +I++ + TLL LEL I + P
Sbjct: 354 VLEEIRG---NSHGGQWEMTINALSDHSNIRQLPLKTLLVQLELRGI----IAPRYAYFA 406
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + + I S + D + + A V
Sbjct: 407 EYRFKYLVEPEALLARFEGERRQFLEAIFNASARARTWCTVDFDALYSQHQAPRARVVKA 466
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L L+ RG I E K Y +++ D AL+A L + E ++R++ M A+
Sbjct: 467 LDYLQERGWIELESKQMTDVYAVLQADFDGQALAAELHAYFVAQETSEIRRIQAML--AL 524
Query: 725 FAVDVC 730
FA + C
Sbjct: 525 FASEQC 530
>gi|410091591|ref|ZP_11288148.1| ATP-dependent DNA helicase RecQ [Pseudomonas viridiflava UASWS0038]
gi|409761132|gb|EKN46231.1| ATP-dependent DNA helicase RecQ [Pseudomonas viridiflava UASWS0038]
Length = 644
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 191/583 (32%), Positives = 284/583 (48%), Gaps = 40/583 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYSQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q E+VA+ + + G +K+L +S ER N F T
Sbjct: 65 LIQDQLAFLQRHGISAASIDSAQSREDVAQVMARARSGELKILMISVERLKNERFRQFIT 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 125 QVP-ISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQALLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I +++ R NL L V ++G +++ ++ E + + Y LQ +
Sbjct: 182 EKFAIAPQDVVTTGFYRPNLHLWVEPVAGRDKRRRLVEWLSERGG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
++ I+ +L N + +YH+G+P R IQ+ F S ++ +VAT+AFGMG+DK D
Sbjct: 240 EY-----IAAHLQQNGLPASAYHAGLPNDKRESIQKQFMSGQLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPEL 606
L + + + L L S R+ +K TLL LEL I E
Sbjct: 355 VLDDLLAARHDGQWEFLLNPLADLSNIRQLPLK-----TLLVQLELRGIIAPRYAYFAEY 409
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ + + ++ + V +++ S + D + GA V L
Sbjct: 410 RFKFLIEPAELMARFEGERRQFVEAVIQTSSRARTWATVDFDALYQQYGAERGRVVTALD 469
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
+ +G I E K Y+++ D ALS L + SE E +V ++ M VFA
Sbjct: 470 YFQEKGWIELESKQMTEVYSLLRTDFDPDALSNELHVYFSEHETTEVARIHTMLE--VFA 527
Query: 727 VDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
D CL + YF GDDN P + G S
Sbjct: 528 SD--------------QCLTHRLARYF-GDDNA--PERCGHCS 553
>gi|452749805|ref|ZP_21949563.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
stutzeri NF13]
gi|452006444|gb|EMD98718.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
stutzeri NF13]
Length = 646
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 187/588 (31%), Positives = 291/588 (49%), Gaps = 45/588 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYD FR GQ +AI+ V+ +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 6 LKQTFGYDGFRPGQAQAIRAVVAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 65
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q E+ +ET+ + G +K+L +S ER N F + F
Sbjct: 66 LMQDQLAFLQRQGIAAGSIDSAQSREQASETMARAKSGELKILMISVERLKNERFRN-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATAT + D+
Sbjct: 125 SQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQVLLLTATATPPVIADMQ 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V +SG N+Q+ ++ + ++ + +
Sbjct: 183 AKFSIAADDVVTTGFYRPNLNLLVEPVSGVNKQHRLVEWLSD-----KTGQPTIVYVTQQ 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K E ++ +L +YH+G+ + R IQ F + ++ +VAT+AFGMG+DK D
Sbjct: 238 KTAEQ--VAEHLAQRGFPASAYHAGMAHELRESIQRRFMAGELNCIVATIAFGMGIDKAD 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN- 549
+ V+HY LP+S+E Y QEIGRAGRDG S C + + + L++ +Y D + I
Sbjct: 296 IRNVVHYDLPKSVENYSQEIGRAGRDGNASDCLVLANRDSLSVLQNFVYGDTPEREGIRC 355
Query: 550 --KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELK 607
L Q G+ L+ S + +I++ + TLL LEL I + P
Sbjct: 356 VLDELLQAAAPDQKGSGQW-ELMLNQLSEQSNIRQLPLKTLLVQLELRGI----IAPRFA 410
Query: 608 VTCTLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDV 661
F + P +L ++ + V I+ S + D + GA V
Sbjct: 411 YFAEYRFKYLLEPKVLVAKFEGERRQFVEAIVHSSARARTWCTLDFDALYRQHGADRARV 470
Query: 662 SNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFH 721
L + +G I E K Y +++ + ALS L + + E ++ ++D M
Sbjct: 471 VKALEYFQEKGWIELESKQMTEVYALLDQRFEAEALSGELHAYFRQHEASEISRIDNML- 529
Query: 722 AAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
A+F CL + + YF GD P + G S
Sbjct: 530 -ALFE--------------SAECLSQRLATYF-GDRQ--APQRCGHCS 559
>gi|351713958|gb|EHB16877.1| ATP-dependent DNA helicase Q4 [Heterocephalus glaber]
Length = 1192
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 222/723 (30%), Positives = 332/723 (45%), Gaps = 123/723 (17%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ + +L ST+LVLPTGAGKSLCYQ+PA++ P LTLV+ PL++L
Sbjct: 456 GHKAFRPGQERTVMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVISPLLSL 515
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF---LSIF 310
M DQL LPP + L S ++ ++ +Q + VL +SPE + A +S+
Sbjct: 516 MDDQLSSLPPCLKAACLHSGMTRKQRDSVLQKVQAAQVHVLMLSPEALVGAGSGGPVSLP 575
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
A L ++ +DEAHC+S+WSHNFRP Y+R+ +LR R+ V+C L +TATAT T R
Sbjct: 576 QAAQLPPVAFACIDEAHCISQWSHNFRPCYLRI-CKVLRERMGVQCFLGLTATATRRTAR 634
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF---H 417
DV L + + A + NL LSVS + Q +R +D V +
Sbjct: 635 DVAQHLGMAEELGPREAAAIPANLHLSVSTDKDPEQALVTLLQGDRFRTLDSVIVYCNRR 694
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
++ L + + D R ++ ++YH+G+ ++R R+Q F ++RVVV
Sbjct: 695 EDTQRVAALLRTCLYAVQDPKLRGRAPEDVA-EAYHAGMCNRERQRVQRAFMKGQLRVVV 753
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFR 533
ATVAFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL +D+
Sbjct: 754 ATVAFGMGLDRPDVRAVLHLGLPSSFENYVQAVGRAGRDGQPAHCHLFLKPQGEDLQ--E 811
Query: 534 LRSLMYSDGVDEYAINKFLCQVFT------------NGMN-------------------- 561
LR ++ DG D A+ K + VF G N
Sbjct: 812 LRRHVHRDGADFLAMKKLMRCVFPPCTCTQRERKEGGGDNETKPAAEALPVAAKQPDGCP 871
Query: 562 ---SHGKLC-----SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLN 613
G+ C +L + + D+ EE + TLL LEL +L+LLP C L
Sbjct: 872 AASGQGRACPGHERALPVQPTVQALDLSEEAIETLLCYLELHPQHWLELLPATYAHCRLY 931
Query: 614 FHKTTPTL--LADKDKMVATILKK---SETKQG--QYVFDIPTVANSIGATTIDVSNQLL 666
T L LA + VA + +TKQG F++ + +S+G V L
Sbjct: 932 CPGGTNQLQTLAHRYPPVAACWARWPPKDTKQGSCSMEFNVVELVDSMGWELSSVRRSLH 991
Query: 667 NLKMR-----------------GEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVE 709
L+ GE+ + + P E C +
Sbjct: 992 QLQWDPEPRTGMLQGTGVLVEFGELAFHFRSPG--DLTAEERDQVCDFLYSCVQTRECKA 1049
Query: 710 NCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQ-----KNILDYF----------R 754
++R++ + FH+ F C L P + K +L ++
Sbjct: 1050 LARLRRMFQAFHSVAFP--------SCGPCLEQPDEERSAQLKTLLSHYFEEEEEEEDEE 1101
Query: 755 GDDNCDVPNKIGQSS-----PFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTI 809
G ++ P GQ+ +R +I+ L +F+ RAVARI HGI SP YP+ +
Sbjct: 1102 GVEDKQSPEP-GQAQLQDWEDQVRPNIRQLLSLWPEERFSGRAVARIFHGIGSPCYPAEV 1160
Query: 810 WSK 812
+ +
Sbjct: 1161 YGR 1163
>gi|344308651|ref|XP_003422990.1| PREDICTED: ATP-dependent DNA helicase Q4 [Loxodonta africana]
Length = 1204
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 213/715 (29%), Positives = 332/715 (46%), Gaps = 116/715 (16%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
GY +FR GQ +A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LT+V+ PL+AL
Sbjct: 477 GYQAFRPGQEQAVMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTIVISPLLAL 536
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF---LSIF 310
M DQ+ LPP + L S ++ +R + + VL +SPE + A + +
Sbjct: 537 MDDQVSRLPPGLKAACLHSGMNRKQREGVLRKVLAAQVHVLMLSPEALVEAGTGGPVCLP 596
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
A+ L ++ +DE HC+S+WSHNFRP Y+R+ +LR + V C L +TATA +T
Sbjct: 597 PASQLPPVAFACIDEVHCLSQWSHNFRPCYLRV-CKVLREHMGVHCFLGLTATAPRSTAL 655
Query: 369 DVMSAL---EIPLSNLIQKAQLRDNLQLSVSLSGNNR-------QNERSAYVDEVFSF-H 417
DV L E P + + A + NL LSVS+ + Q ER +D + +
Sbjct: 656 DVARHLGVTEGPSPSGL-PATIPTNLHLSVSMDRDPEQALVTLLQGERFRSLDSAIVYCN 714
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
R + + R +++ ++YH+G+ A++R R+Q+ F ++RVVV
Sbjct: 715 RREDTERVAALLRTCLHKTPGPRGGVPEAVA-EAYHAGMRAQERRRVQQAFMRGRLRVVV 773
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFR 533
ATVAFGMGLD+ DV AV+H LP S E YVQ IGRAGRDG+ ++CHLFL +D+
Sbjct: 774 ATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGQPAHCHLFLQPQGEDLQ--E 831
Query: 534 LRSLMYSDGVDEYAINKFLCQVFTNGMNSH------------------------------ 563
LR +++ VD + + + VF +H
Sbjct: 832 LRRHVHAHTVDFLTVKRLVQTVFPPCSCAHPSPEGGGKREQVTLPPETRQCGSQDTPSGS 891
Query: 564 ----GKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTP 619
G +L + + D+ +E + TLL LEL ++L+LL C L+ +
Sbjct: 892 SACLGHTRALPVQPMEQTLDMPQEAIETLLCYLELHPQRWLELLAPTYAHCRLHSPRGPA 951
Query: 620 TL--LADKDKMVATILKKS---ETKQG--QYVFDIPTVANSIGATTIDVSNQLLNLKMR- 671
L LA + VA L + +T G F++ +A+S+G + L L+
Sbjct: 952 QLSALALRCPPVAVCLAQQPPEDTGGGSSSVEFNVVELADSMGWELAPLRRALCQLQWDQ 1011
Query: 672 ----------------GEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRK 715
GE+ + + P E C + + ++R+
Sbjct: 1012 NPRSGMPQGTGVLVEFGELAFHVHCPR--NLTAEEKDQLCEFLHGRVQAREQEALARLRR 1069
Query: 716 LDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNIL------DYF-------RGDDNCDVP 762
+ FH+ + C L P ++++ YF +G ++ + P
Sbjct: 1070 TFQAFHSVAYP--------SCGPCLERPNEERSVQLKTLLRCYFEEETLGPQGMEDEEGP 1121
Query: 763 NKIGQS-----SPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
GQ+ +R DI+ L KF+ RAVARI HGI SP YP+ ++ +
Sbjct: 1122 EP-GQARLQDWEDQIRRDIRQLLSLRPEEKFSGRAVARIFHGIGSPCYPAQVFGR 1175
>gi|383459704|ref|YP_005373693.1| ATP-dependent DNA helicase [Corallococcus coralloides DSM 2259]
gi|380734100|gb|AFE10102.1| ATP-dependent DNA helicase [Corallococcus coralloides DSM 2259]
Length = 642
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 187/544 (34%), Positives = 283/544 (52%), Gaps = 28/544 (5%)
Query: 180 VRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTML-VLPTGAGKSLCYQIPAM 238
+RD+A D +LR +G +SFR GQ E + +L+ + + L V PTG GKSLCYQ+PA+
Sbjct: 1 MRDDAVDV----VLRERFGLESFRPGQREVLTKLLEPQGSALAVFPTGGGKSLCYQLPAL 56
Query: 239 ILPGLTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVS 297
+L GLT+VV PL+ALM DQ+ L I L SS EE E ++ G +K+L+V+
Sbjct: 57 LLEGLTVVVSPLIALMKDQIDALERKGIRAARLDSSLSLEESREVTESLRDGTLKLLYVA 116
Query: 298 PERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILA 357
PERF N F+ + + ISL VDEAHCVSEW HNFRP Y++L A R L E ILA
Sbjct: 117 PERFNNERFMGLLSELQ-ISLFAVDEAHCVSEWGHNFRPDYLKL-AQAART-LQAERILA 173
Query: 358 MTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH 417
+TATAT + D+ IP S+ + R+NL L + +G ++ + V+ + S
Sbjct: 174 LTATATPQVVHDICQGFGIPESHAVVTGFYRNNLTLETTPTGPEARD--ALLVERLKSRP 231
Query: 418 RSSKHYYI-LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
+ Y+ LQ + + ++ L + +YH+G+ A++R R+QE + + +V
Sbjct: 232 PGTTIVYVTLQKTAER-----VAALLSAEGLPASAYHAGLEAEERERVQEAWTHSAKGIV 286
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRL 534
VAT+AFGMG+DK DV AV HY+LP+ LE Y QEIGRAGRDGR S L DD+ L
Sbjct: 287 VATIAFGMGIDKADVRAVYHYNLPKGLESYSQEIGRAGRDGRPSVVELLACPDDVPT--L 344
Query: 535 RSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
+ D A+ + ++ ++G H + +L + D++ V+ T LT LEL
Sbjct: 345 ENFALGDTPLPEALTALVNELLSSGPELHLDMYAL-----GNRHDLRPLVLRTALTYLEL 399
Query: 595 GEI--QYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVAN 652
+ Q KV + ++ + V + ++ + Y FD VA
Sbjct: 400 EGVLRQGTPFYAGYKVQPAGSVDALVGRFQGERARFVKELFAHAKKGRTWYTFDPAEVAK 459
Query: 653 SIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCK 712
++ V L + +G ++ +P YT + D AL A L + + E +
Sbjct: 460 ALDQPRDRVVKALDYFQEQGYAEVQVAEPRQRYTRLREREDAKALVALLQERFQKREVQE 519
Query: 713 VRKL 716
V ++
Sbjct: 520 VSRV 523
>gi|209808853|ref|YP_002264391.1| putative ATP-dependent DNA helicase [Aliivibrio salmonicida
LFI1238]
gi|208010415|emb|CAQ80765.1| putative ATP-dependent DNA helicase [Aliivibrio salmonicida
LFI1238]
Length = 639
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 194/633 (30%), Positives = 301/633 (47%), Gaps = 55/633 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+DS R GQ + I+ VL+ S+ + PTG+GKSLCYQ+PA++LP LTLV+ PL+A
Sbjct: 7 LKDVFGFDSLRGGQQQVIEKVLNGHSSAAIFPTGSGKSLCYQLPALLLPNLTLVISPLLA 66
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I + S+Q EE ++ ++ G IK+L +S ER N F F
Sbjct: 67 LMKDQITFLKSKGIAAASIDSTQTREETQAILQGVRNGDIKILMISVERLKNERFRQ-FI 125
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT + D+
Sbjct: 126 AQINISLLVVDEAHCISEWGHNFRPDYLKLPQD--REALNIPHVLLLTATATPAVIEDMS 183
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+I +++ R NL +S+ + Q + + ++ + Y LQ + +
Sbjct: 184 KKFKIEKDDIVITGFYRSNLDISI-IPVEEEQKRSTLFATLQQKPNQPNIVYVTLQQTAE 242
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+ ++++L N I K+YH+G+ R IQ F + ++ +VAT+AFGMG+DK DV
Sbjct: 243 N-----VAQWLQSNGIQAKAYHAGLKHDIREDIQHKFMNGELNCIVATIAFGMGVDKSDV 297
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG S+C + + L + +Y D D AI
Sbjct: 298 RQVIHFDLPKSIENYSQEIGRAGRDGAPSFCTVLANTSGLNVLENFVYGDTPDREAIQYV 357
Query: 552 LCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKVT 609
L ++ + +L L K+S R+ +K TLL LEL +I + +
Sbjct: 358 LDDIYKSSDTWEIQLLRLSKDSNVRQLPLK-----TLLVYLELKQIIQAKYSYYADYRFK 412
Query: 610 CTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK 669
+ + ++ V+ I + S + + D + V + L
Sbjct: 413 TLIPVSEIVGKFQTERQHFVSIIFQCSPKAKTWHTVDFDALWMGYQGERKRVISALDYFH 472
Query: 670 MRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDV 729
+G I E K Y ++ LS + E +++++ M +D
Sbjct: 473 EQGWIELESKLMTEVYQVLNKVESTHVLSQEQHQLFKNKEESEIKRIHTM-------LDF 525
Query: 730 CEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSP--------------FLRAD 775
E CL ++ YF + + P + G S FL D
Sbjct: 526 FET---------KTCLSHSLAHYFA---DYNAPEQCGHCSACRSEGAHLPRNSVSFLADD 573
Query: 776 IKVF-----LQSNLNAKFTPRAVARILHGIASP 803
+V LQ+N A AR L GI++P
Sbjct: 574 EQVRSWCQELQNNSKAPLANAVFARFLCGISTP 606
>gi|440721988|ref|ZP_20902372.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae BRIP34876]
gi|440729126|ref|ZP_20909312.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae BRIP34881]
gi|440359435|gb|ELP96746.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae BRIP34881]
gi|440362063|gb|ELP99275.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae BRIP34876]
Length = 644
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 191/581 (32%), Positives = 283/581 (48%), Gaps = 36/581 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q +E+A+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQTLLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRRLVEWLNERRG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAAHLEQNGLPASAYHAGLPNDQRESIQKQFMGGHLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G G+ L+ A +I++ + TLL LEL I E +
Sbjct: 355 VLEDLL--GARHDGQWEFLLGPLADLS-NIRQLPLKTLLVQLELRGIIAPRYAYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L ++ + V ++ S + D + GA V L
Sbjct: 412 KFLLQPQDLMARFEGERREFVQALIDTSNRARTWATVDFEAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L + + E +V ++ M VFA D
Sbjct: 472 QEKGWIELESKQMTEVYSLLRSDFDAQALSVELHDYFAHHEATEVARIHTMLD--VFASD 529
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + YF GD N P + G S
Sbjct: 530 --------------QCLTHRLAQYF-GDHNA--PERCGHCS 553
>gi|422620532|ref|ZP_16689210.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. japonica
str. M301072]
gi|330900890|gb|EGH32309.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. japonica
str. M301072]
Length = 644
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 191/581 (32%), Positives = 283/581 (48%), Gaps = 36/581 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q +E+A+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQTLLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRRLVEWLNERRG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAAHLEQNGLPASAYHAGLPNDQRESIQKQFMGGHLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G G+ L+ A +I++ + TLL LEL I E +
Sbjct: 355 VLEDLL--GARHDGQWEFLLGPLADLS-NIRQLPLKTLLVQLELRGIIAPRYAYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L ++ + V ++ S + D + GA V L
Sbjct: 412 KFLLQPQDLMTRFEGERREFVQALIDTSNRARTWATVDFEAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L + + E +V ++ M VFA D
Sbjct: 472 QEKGWIELESKQMTEVYSLLRSDFDAQALSVELHDYFAHHEATEVARIHTMLD--VFASD 529
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + YF GD N P + G S
Sbjct: 530 --------------QCLTHRLAQYF-GDHNA--PERCGHCS 553
>gi|302186978|ref|ZP_07263651.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
642]
Length = 644
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 184/545 (33%), Positives = 274/545 (50%), Gaps = 25/545 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
L+ DQL RH P + S+Q +E+A+ + + G +K+L +S ER N F +
Sbjct: 65 LIQDQLAFLHRHGIP---AASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFRN 121
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT +
Sbjct: 122 -FIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQSLLLTATATPQVII 178
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ I ++I R NL L V +SG +++ +++E + + Y LQ
Sbjct: 179 DMQDKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRLLVEWLNERRG--QPTIVYVTLQ 236
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ +H I+ YL N + +YH+G+P R IQ+ F ++ +VAT+AFGMG+D
Sbjct: 237 KTAEH-----IAAYLEQNGLPASAYHAGLPNDQRESIQKQFMGGRLNCIVATIAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D +
Sbjct: 292 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREG 351
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPE 605
I + L + G G+ L+ A +I++ + TLL LEL I E
Sbjct: 352 IARVLEDLL--GARHDGQWEFLLGPLADLS-NIRQLPLKTLLVQLELRGIIAPRYAYFAE 408
Query: 606 LKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQL 665
+ L ++ + V ++ S + D + GA V L
Sbjct: 409 YRFKFLLQPQDLMARFEGERREFVQALIDTSNRARTWATVDFEAMYQRYGAERGRVVKAL 468
Query: 666 LNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVF 725
+ +G I E K Y+++ D ALS L + + E +V ++ M VF
Sbjct: 469 DYFQEKGWIELESKQMTEVYSLLRSDFDAQALSVELHDYFAHHEASEVARIHTMLE--VF 526
Query: 726 AVDVC 730
A D C
Sbjct: 527 ASDRC 531
>gi|86145685|ref|ZP_01064015.1| putative ATP-dependent DNA helicase RecQ [Vibrio sp. MED222]
gi|85836656|gb|EAQ54782.1| putative ATP-dependent DNA helicase RecQ [Vibrio sp. MED222]
Length = 644
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 193/634 (30%), Positives = 300/634 (47%), Gaps = 51/634 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+DS R+GQ + I VL ST + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 6 LKQVFGFDSLRNGQKQVIDNVLSGHSTAAIFPTGSGKSLCYQLPALELPHLTLVISPLLA 65
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SSQ + + ++ ++ G K+L +S ER N F F
Sbjct: 66 LMKDQLSFLHSKGISAAAIESSQDRQTTQQVMQSVRNGDTKILMISVERLKNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + +LN+ +L +TATATT+ ++D+
Sbjct: 125 SQVPISLLVVDEAHCISEWGHNFRPDYLKLPQ--YQKQLNIPQVLLLTATATTSVIQDMK 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
S EI ++ R NL LS+ + E V S + + + Q +
Sbjct: 183 SKFEIDEERVVVTGFYRQNLDLSIQPCEQTSKLETLCNVVNQASLAPTIVYVTLQQTA-- 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+++++ L + ++ +YH+G+ ++R IQ F ++ + +VAT+AFGMG+DK ++
Sbjct: 241 ----EMVAQQLRNAGVNAVAYHAGLKPENRDAIQHQFMNDDVNCIVATIAFGMGVDKSNI 296
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + ++ D D +I
Sbjct: 297 RRVIHFDLPKSIENYSQEIGRAGRDGQPSECILLANKYGLSTLENFVFGDTPDNISIQTV 356
Query: 552 LCQVFTNG--MNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQ-YLQLLPELK 607
L +++ N S ++ SR+ +I++ + TLL LE+ G I+ + K
Sbjct: 357 LKEIYENQNIAASGTNQWEIMLNQLSRESNIRQLPLKTLLVYLEIEGVIEPKYSYFADYK 416
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
+ T ++ V I + S + D + V +
Sbjct: 417 FKFIRTKQQITEQFQGERRHFVEAIFQCSPQARVWCQVDFDALWTHFQTDRQRVIAAIDY 476
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAV 727
+G I E K Y I LS LT+ E EN ++ +L++M + F
Sbjct: 477 FNEQGWIELESKQITDVYAIHNTTEGMMQLSERLTELFKEKENSEINRLNQML--SFFEA 534
Query: 728 DVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS---------------PFL 772
D CL + YF D P G S P
Sbjct: 535 DT--------------CLSSRLASYFADD---KAPTNCGHCSVCRGEVAILPTVDVEPVD 577
Query: 773 RADIKVFLQSNLNAK---FTPRAVARILHGIASP 803
+ + ++A T A+ R L GIA+P
Sbjct: 578 DETVMTWTHEFISASQQLITDEAITRFLCGIATP 611
>gi|443641609|ref|ZP_21125459.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas syringae pv.
syringae B64]
gi|443281626|gb|ELS40631.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas syringae pv.
syringae B64]
Length = 649
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 192/584 (32%), Positives = 284/584 (48%), Gaps = 42/584 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 10 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 69
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
L+ DQL RH I + S+Q +E+A+ + + G +K+L +S ER N F +
Sbjct: 70 LIQDQLAFLHRH---GISAASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFRN 126
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT +
Sbjct: 127 -FIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQTLLLTATATPQVII 183
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ I ++I R NL L V +SG +++ +++E + + Y LQ
Sbjct: 184 DMQDKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRRLVEWLNERRG--QPTIVYVTLQ 241
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ +H I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+D
Sbjct: 242 KTAEH-----IAAHLEQNGLPASAYHAGLPNDQRESIQKQFMGGHLNCIVATIAFGMGID 296
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D +
Sbjct: 297 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREG 356
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPE 605
I + L + G G+ L+ A +I++ + TLL LEL I E
Sbjct: 357 IARVLEDLL--GARHDGQWEFLLGPLADLS-NIRQLPLKTLLVQLELRGIIAPRYAYFAE 413
Query: 606 LKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQL 665
+ L ++ + V ++ S + D + GA V L
Sbjct: 414 YRFKFLLQPQDLMTRFEGERREFVQALIDTSNRARTWATVDFEAMYQQYGAERGRVVKAL 473
Query: 666 LNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVF 725
+ +G I E K Y+++ D ALS L + + E +V ++ M VF
Sbjct: 474 DYFQEKGWIELESKQMTEVYSLLRSDFDAQALSVELHDYFAHHEATEVARIHTMLD--VF 531
Query: 726 AVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
A D CL + YF GD N P + G S
Sbjct: 532 ASD--------------QCLTHRLAQYF-GDHNA--PERCGHCS 558
>gi|441503685|ref|ZP_20985686.1| ATP-dependent DNA helicase RecS (RecQ family) [Photobacterium sp.
AK15]
gi|441428618|gb|ELR66079.1| ATP-dependent DNA helicase RecS (RecQ family) [Photobacterium sp.
AK15]
Length = 641
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 189/635 (29%), Positives = 316/635 (49%), Gaps = 59/635 (9%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+D+ R GQ I +L+ +S+ + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 6 LKNTFGFDALRPGQEAVITRILNGESSAAIFPTGSGKSLCYQLPAVQLPHLTLVISPLLA 65
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+ +E + ++ ++ G IKVL +S ER N F F
Sbjct: 66 LMKDQLDFLRSKNIPAASIDSTLSWDESQQVMQGVRNGEIKVLMISVERLNNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + R LN+ +L +TATAT + D+
Sbjct: 125 SQVPISLLVVDEAHCISEWGHNFRPDYLKL--PVHRQWLNIPQVLLLTATATPAVIEDMS 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGN-NRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I +N++ R NL L+++ + ++Q + +++ S + + Y LQ +
Sbjct: 183 HKFGIEQNNIVITGFYRSNLDLTIAPTAEADKQQALLSQLEQ--SPQQPTIVYVTLQKTA 240
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
++ ++++L + ++YH+G+ ++ R +IQ+ F + + ++AT+AFGMG+DK D
Sbjct: 241 EN-----LAQWLNQHGYKAQAYHAGMDSEQRQQIQQAFMAGQHNCIIATIAFGMGIDKAD 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIHY LP+S+E Y QEIGRAGRDG+LS+C + + + L + +Y D D AI
Sbjct: 296 IRQVIHYDLPKSIENYSQEIGRAGRDGQLSHCTVLANKSSVNVLENFVYGDTPDLDAIAF 355
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI---QYLQLLPELK 607
L Q+ + L L ++S R +K TLL LE+ +I QY + +
Sbjct: 356 ILAQIQASPGQWEVMLSRLSRDSNIRLLPLK-----TLLVYLEMQQIIEPQYT-YFADYR 409
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
+ ++ + V+ I S + + D + A V + +
Sbjct: 410 FKMIQDQQSIIEHFQGERRQFVSQIFACSPKARTWHTVDFEALWQGCQAERKRVVSAIDY 469
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAV 727
+G I E K Y ++ + L+++L + EN ++ ++ RM + F
Sbjct: 470 FNEKGWIELESKQMTDVYKVINPNFNIQELASYLYDLFQQKENSEIERITRML--SFFE- 526
Query: 728 DVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS---------------PFL 772
+ CL + DYF + + P++ G S P +
Sbjct: 527 -------------SSQCLSHTLADYFA---DANAPHECGHCSVCRGKVAELVNSEPLPEI 570
Query: 773 RAD-IKVFLQSNLNAKFTP---RAVARILHGIASP 803
+ +K++ + A TP A+ R L G+ SP
Sbjct: 571 TVNTLKIWCDPFITACPTPPSTAAITRFLSGMTSP 605
>gi|422672819|ref|ZP_16732181.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. aceris
str. M302273]
gi|330970555|gb|EGH70621.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. aceris
str. M302273]
Length = 644
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 191/583 (32%), Positives = 282/583 (48%), Gaps = 40/583 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q +E+A+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQREFNIPQTLLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRRLVEWLNERRG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N + +YH+G+P R IQ+ F ++ +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAAHLEQNGLPASAYHAGLPNDQRESIQKQFMGGRLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPEL 606
L + + + L L S R+ +K TLL LEL I E
Sbjct: 355 VLEDLLAARHDGQWEFLLGPLADLSNIRQLPLK-----TLLVQLELRGIIAPRYAYFAEY 409
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ L ++ + V ++ S + D + GA V L
Sbjct: 410 RFKFLLQPQDLMARFEGERREFVQALIDTSNRARTWATVDFQAMYQQYGAERGRVVKALD 469
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
+ +G I E K Y+++ D ALS L + + E +V ++ M VFA
Sbjct: 470 YFQEKGWIELESKQMTEVYSLLRSDFDAQALSVELHDYFAHHEATEVARIHTMLD--VFA 527
Query: 727 VDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
D CL + YF GD N P + G S
Sbjct: 528 SD--------------QCLTHRLARYF-GDHNA--PERCGHCS 553
>gi|422630848|ref|ZP_16696041.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. pisi str.
1704B]
gi|330940397|gb|EGH43498.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. pisi str.
1704B]
Length = 644
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 191/581 (32%), Positives = 283/581 (48%), Gaps = 36/581 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q +E+A+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDEIADVMARARFGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQTLLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRRLVEWLNERRG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAAHLEQNGLPASAYHAGLPNDQRESIQKQFMGGHLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G G+ L+ A +I++ + TLL LEL I E +
Sbjct: 355 VLEDLL--GARHDGQWEFLLGPLADLS-NIRQLPLKTLLVQLELRGIIAPRYAYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L ++ + V ++ S + D + GA V L
Sbjct: 412 KFLLQPQDLMARFEGERREFVQALIDTSNRARTWATVDFEAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L + + E +V ++ M VFA D
Sbjct: 472 QEKGWIELESKQMTEVYSLLRSDFDAQALSIELHDYFAHHEATEVARIHTMLD--VFASD 529
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + YF GD N P + G S
Sbjct: 530 --------------QCLAHRLARYF-GDHNA--PERCGHCS 553
>gi|90411119|ref|ZP_01219132.1| putative putative ATP-dependent DNA helicase RecQ [Photobacterium
profundum 3TCK]
gi|90327965|gb|EAS44286.1| putative putative ATP-dependent DNA helicase RecQ [Photobacterium
profundum 3TCK]
Length = 641
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 191/592 (32%), Positives = 286/592 (48%), Gaps = 41/592 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+DS R GQ + I VL+ +S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 6 LKDYFGFDSLRKGQEDVITRVLNGQSAAAIFPTGSGKSLCYQLPAVQLPHLTLVISPLLA 65
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SSQ +E + ++ ++ G KVL +S ER N F F
Sbjct: 66 LMKDQLDFLHSKKIPAASIDSSQTWDESQQVMQGVRNGETKVLMISVERLKNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ +SL+VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT ++D+
Sbjct: 125 SQVQVSLLVVDEAHCISEWGHNFRPDYLKL--PYYRQLLNIPQVLLLTATATPNVIQDMS 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH--YYILQIS 429
+ I ++I R NL L++ L+ + + Y +V H Y LQ +
Sbjct: 183 TKFGIAKQDIIVTGFYRPNLDLTI-LAAEDENKLPTLY--KVLGHHNDQPTIIYVTLQQT 239
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ ++ L ++YH+G+ R IQ F S I +VAT+AFGMG+DK
Sbjct: 240 A-----EAVAAALNQQGYQAQAYHAGMDNDRRQAIQHEFMSGNINCIVATIAFGMGIDKS 294
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
++ V+H+ LP+S+E Y QEIGRAGRDG S C + + L + +Y D D AI
Sbjct: 295 NIRKVVHFDLPKSIENYSQEIGRAGRDGENSECTVIANKAGLNILENFVYGDTPDLDAIA 354
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELK 607
L ++ L L K+S R +K TLL LE+ +I + +
Sbjct: 355 YILDEIKNQPAAWEVMLTRLSKDSNVRLLPLK-----TLLVYLEIHKIVEPKFTYFADYR 409
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
C L + ++ + V I S + Y D + NS A V +
Sbjct: 410 FKCNLTPQEIFAHFQGERRQFVENIFACSPKARTWYSVDFEALWNSCHADRKRVITAIDY 469
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAV 727
+G IT E K Y +V D + L + E+ +++++++M +
Sbjct: 470 FSEKGWITLESKQMTDVYRVVNNQYDVNEEAKKLFDLFRQKESSEIKRINKM-------I 522
Query: 728 DVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVF 779
+ E TH CL ++ YF D+N P + G S R DI V
Sbjct: 523 NFFENTH---------CLSHDLASYF-ADNN--APKQCGHCS-VCRGDIAVL 561
>gi|66048172|ref|YP_238013.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
B728a]
gi|63258879|gb|AAY39975.1| ATP-dependent DNA helicase, RecQ-like protein [Pseudomonas syringae
pv. syringae B728a]
Length = 649
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 192/584 (32%), Positives = 284/584 (48%), Gaps = 42/584 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 10 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 69
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
L+ DQL RH I + S+Q +E+A+ + + G +K+L +S ER N F +
Sbjct: 70 LIQDQLAFLHRH---GISAASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFRN 126
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT +
Sbjct: 127 -FIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQTLLLTATATPQVII 183
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ I ++I R NL L V +SG +++ +++E + + Y LQ
Sbjct: 184 DMQDKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRRLVEWLNERRG--QPTIVYVTLQ 241
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ +H I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+D
Sbjct: 242 KTAEH-----IAAHLEQNGLPASAYHAGLPNDQRESIQKQFMGGHLNCIVATIAFGMGID 296
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D +
Sbjct: 297 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREG 356
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPE 605
I + L + G G+ L+ A +I++ + TLL LEL I E
Sbjct: 357 IARVLEDLL--GARHDGQWEFLLGPLADLS-NIRQLPLKTLLVQLELRGIIAPRYAYFAE 413
Query: 606 LKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQL 665
+ L ++ + V ++ S + D + GA V L
Sbjct: 414 YRFKFLLQPQDLMARFEGERREFVQALIDTSNRARTWATVDFEAMYQQYGAERGRVVKAL 473
Query: 666 LNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVF 725
+ +G I E K Y+++ D ALS L + + E +V ++ M VF
Sbjct: 474 DYFQEKGWIELESKQMTEVYSLLRSDFDAQALSIELHDYFAHHEATEVARIHTMLD--VF 531
Query: 726 AVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
A D CL + YF GD N P + G S
Sbjct: 532 ASD--------------QCLTHRLARYF-GDHNA--PERCGHCS 558
>gi|429211268|ref|ZP_19202434.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
sp. M1]
gi|428158682|gb|EKX05229.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
sp. M1]
Length = 644
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 182/547 (33%), Positives = 274/547 (50%), Gaps = 30/547 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+G+ FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LERVFGFRQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q E+VA+T+ + G +KVL +S ER N F + F
Sbjct: 65 LMQDQLAFLARHGIAAASIDSAQSREQVAQTMARARSGELKVLMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L A + + + +L +TATAT + D+
Sbjct: 124 GEVPISLLVVDEAHCISEWGHNFRPDYLKLPA--YQKQFRIPQVLLLTATATPAVIADMR 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+ I ++++ R NL L V + +R+ V+ + + Y+ Q
Sbjct: 182 AKFAIAEADVVTTGFYRANLNLQVEPVASA--AKRARLVEWLGARAGQPSIVYVTQ---- 235
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+ I+ +L + I ++YH+G+ +R IQ+ F + + +VAT+AFGMG+DK D+
Sbjct: 236 QKTAEDIAAHLSERGIPARAYHAGMDHAEREAIQQRFMAGALNCIVATIAFGMGIDKSDI 295
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 296 RNVVHFDLPKSVENYSQEIGRAGRDGQPSDCLVLANRDSLSVLENFVYGDTPEREGIRSV 355
Query: 552 LCQVFT--NGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVT 609
L ++ NG L+ + S + +I++ + TLL LEL I + P
Sbjct: 356 LAEIAAAPNGQ------WELMLTALSDQSNIRQLPLKTLLVQLELRGI----IAPRFAYF 405
Query: 610 CTLNFHK-TTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSN 663
F P L ++ + V IL S + D + GA V
Sbjct: 406 AEYRFKNLIEPDALLGHFEGERRQFVEAILSTSARARTWSTLDFDALYQRHGAERARVVK 465
Query: 664 QLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAA 723
L + RG I E K Y + E D ALS L + E ++ ++ M
Sbjct: 466 ALDYFQERGWIELESKQMTEVYAVREAGFDMDALSDELYAYFKRHEASEIARIGAMLE-- 523
Query: 724 VFAVDVC 730
+FA D C
Sbjct: 524 LFASDQC 530
>gi|350396812|ref|XP_003484675.1| PREDICTED: ATP-dependent DNA helicase Q4-like [Bombus impatiens]
Length = 1542
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 208/693 (30%), Positives = 351/693 (50%), Gaps = 91/693 (13%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLVA 252
+G+++FR GQ +A+ +L +ST++ L TG+GKSLCYQ+PA + +TLV+ PLV+
Sbjct: 843 FGHETFRPGQEKAVMRILSGQSTLVTLSTGSGKSLCYQLPAYLYSKYSNCITLVISPLVS 902
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FLS 308
LM DQ+ +P + L ++Q + + +++ G + +L +SPE + + F +
Sbjct: 903 LMDDQVTGVPSFLSAACLHTNQTQKVKDNVMEMVKQGKVNILLISPEAVVAGEKSTGFGA 962
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+ I+ +DEAHC+S+WSHNFRPSY+ + +L+ +L V+ +LA+TATAT T
Sbjct: 963 LLRQLPPIAFACIDEAHCISQWSHNFRPSYL-MVCRVLKEKLGVKTVLALTATATKATAE 1021
Query: 369 DVMSALEIP--LSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY--- 423
++S L+I ++ +I + NL ++S N Q + E F S Y
Sbjct: 1022 SIVSHLDIEEGMAGVISDIPIPRNLLFTISKDENRDQALIKLLLSERFKNCSSIIIYCTR 1081
Query: 424 --------YILQIS----GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
+L+I+ G +FE + S ++YH+G+ A R +Q+ F
Sbjct: 1082 RDECVRIASLLRIAFSQVGNNFE-----KRNTKLSFIAEAYHAGLSAHRRKIVQKAFMGG 1136
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL---DD 528
+++++VATVAFGMGL+K D+ A+IHY++P + E Y+QE+GRAGRDG ++CHLFL +D
Sbjct: 1137 QVKIIVATVAFGMGLNKADIRAIIHYNMPGTFEGYIQEVGRAGRDGLPAHCHLFLNPMED 1196
Query: 529 ITYFRLRSLMYSDGVDEYAINKFLCQVF--------TNGMNSH---GKLCSLVKESASRK 577
LR +Y++G+D + I + L +VF H G ++ +
Sbjct: 1197 KDKVELRRHIYANGIDRHTIRRLLQKVFLPCSCAKLRENKGDHRCPGHEVAIPIDDTVAA 1256
Query: 578 FDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH----------KTTPTLLADKDK 627
DI EE + TLL LEL +++ +L + + ++ + +T+P L
Sbjct: 1257 LDISEEKISTLLCYLELHPKRFITVLSSVYIRARVSSYNGPQALKQAAQTSPPLAM---- 1312
Query: 628 MVATILKKSETKQGQYVFDIPT--VANSIGATTIDVSNQLLNLKMR-------------- 671
+A L+ + + V + P VA++IG + V L NL+ +
Sbjct: 1313 AIALDLQNGISHEKDNVIEFPVVDVASAIGWDSGVVKGHLKNLEWKTVNGVPKRSAISVR 1372
Query: 672 -GEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDR---MFHAAVFAV 727
++ +K P + EV D AL A +++ S+ E +++L+ M H F+V
Sbjct: 1373 YDKLGLRVKAPG---DLTEVELDE-ALDALVSRAQSQ-ETSSLQQLETISVMLHK--FSV 1425
Query: 728 DVCEKTHGCNGSL--HTPCLQKNILDYFRGDDNCDVP---NKIGQSSPFLRADIKVFLQS 782
E+ N + + L+ I +YF G D+ + ++ + D++ + S
Sbjct: 1426 PSVEECLILNDEMINKSDQLKDVIRNYFEGKVLLDIDLTQQNVMENEAQVACDVRNLIVS 1485
Query: 783 NLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
+ FT RAVARI HGI SP YP+ IW+K F
Sbjct: 1486 YRDNNFTGRAVARIFHGIQSPNYPAYIWNKCRF 1518
>gi|289672165|ref|ZP_06493055.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
FF5]
Length = 644
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 191/581 (32%), Positives = 282/581 (48%), Gaps = 36/581 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLTGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q +E+A+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQTLLLTATATPQVITDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRRLVEWLNERRG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAAHLEQNGLPASAYHAGLPNDQRESIQKQFMGGHLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G G+ L+ A +I++ + TLL LEL I E +
Sbjct: 355 VLEDLL--GARHDGQWEFLLGPLADLS-NIRQLPLKTLLVQLELRGIIAPRYAYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L ++ + V + S + D + GA V L
Sbjct: 412 KFLLQPQDLMARFEGERREFVQALTDTSNRARTWATVDFEAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L + + E +V ++ M VFA D
Sbjct: 472 QEKGWIELESKQMTEVYSLLRSDFDAQALSVELHDYFAHHEATEVARIHTMLD--VFASD 529
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + YF GD N P + G S
Sbjct: 530 --------------QCLTHRLARYF-GDHNA--PERCGHCS 553
>gi|294053679|ref|YP_003547337.1| RecQ family ATP-dependent DNA helicase [Coraliomargarita
akajimensis DSM 45221]
gi|293613012|gb|ADE53167.1| ATP-dependent DNA helicase, RecQ family [Coraliomargarita
akajimensis DSM 45221]
Length = 638
Score = 268 bits (685), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 203/646 (31%), Positives = 314/646 (48%), Gaps = 79/646 (12%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +G+D+FR GQ I +++ +S + PTG+GKSLCYQ+PA++LPGLTLVV PL+
Sbjct: 10 VLQSQFGFDAFRSGQEAVIGTLMEGRSAAAIFPTGSGKSLCYQLPALLLPGLTLVVSPLL 69
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I L SS E+ + I+ G++K+LFV+PER N F+++
Sbjct: 70 ALMKDQIDSLQARGIAAERLDSSLDEEDYRRVTQDIRGGSLKMLFVAPERLGNERFINLI 129
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL+ VDEAHC+S W HNFRP Y++L ++ L VE +LA+TATAT D+
Sbjct: 130 HKQR-ISLLAVDEAHCISSWGHNFRPDYLKLASAA--KELQVERVLALTATATPQVANDM 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGN--------NRQNERSAYVDEVFSFHRSSKH 422
A +I +++ R NL+L V+ + R ER A +
Sbjct: 187 ARAFDIAADDIVNTGFHRPNLELRVTSCSDAERPDLLVQRLKERPAGPTII--------- 237
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y LQ KH E ++ +L + K+YH+G+ ++ R Q+ F ++ ++ AT+AF
Sbjct: 238 YVSLQ---KHAEE--VAEHLVNAGFDAKAYHAGMKSEQRVATQDAFMRGEVPIICATIAF 292
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYS 540
GMG+DK D+ V HY + + E Y+QEIGRAGRDG+ S C LF DD T L + ++
Sbjct: 293 GMGVDKSDIRYVYHYHMAKGYESYMQEIGRAGRDGKPSICELFACADDCTT--LENFVFG 350
Query: 541 DGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYL 600
D D +I + ++ +G + SR+ DI++ V+ TLLT LEL I
Sbjct: 351 DTPDPESIRSIVTELLGSGDE-----IDIAINDLSRRHDIRQLVVNTLLTRLELKGI--- 402
Query: 601 QLLPELKVTCTLNF--HKTTPTLLADKDKMVATILKK---SETKQGQYV-FDIPTVANSI 654
+ E ++ F ++ +LA A ++K +K +++ DI
Sbjct: 403 -IRSEGHYYGSIRFAPKGSSAEILAHYPDNQAAFIRKIFACCSKARKWISLDIDKAIEHT 461
Query: 655 GATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVR 714
G + L +L+ +G +L + +++ D AL A L + E ++
Sbjct: 462 GQQRSVILRALDSLQDKGLAELQLAGYRQRFRLLQQDVDLPALCAELEATFLQHEQMEID 521
Query: 715 KLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFR-------------GDDNCDV 761
+++ M A CL +LDYF D V
Sbjct: 522 RIESMLRYAQ----------------SNSCLTAKLLDYFGESIEPCGHCGICLDDAPAQV 565
Query: 762 PNKIGQSSPFLRADIKVF---LQSNLNAKFTPRAVARILHGIASPA 804
P + Q + R D+ F + N +A PR AR L G+ SPA
Sbjct: 566 PTR--QHASMDRIDLSGFDALVAQNPSALARPRQQARFLCGLNSPA 609
>gi|418292462|ref|ZP_12904402.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
gi|379063885|gb|EHY76628.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
Length = 641
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 189/592 (31%), Positives = 294/592 (49%), Gaps = 50/592 (8%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
L + L+ +GYD FR GQ +AI+ V+ +S + PTG+GKSLCYQ+PA++LP LTLVV
Sbjct: 2 LEQTLKQTFGYDRFRPGQDQAIRAVVAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS 61
Query: 249 PLVALMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
PL+ALM DQL RH I + S+Q E+ +ET+ + G +K+L +S ER N
Sbjct: 62 PLLALMQDQLAFLHRH---GIAAASIDSAQSREQASETMARAKSGELKILMISVERLKNE 118
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
F + F + ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATAT
Sbjct: 119 RFRN-FISQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQHQFNIPQVLLLTATATP 175
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHY 423
+ D+ + I +++ R NL L V ++G N+Q A++ + + +
Sbjct: 176 PAIADMQAKFSIAADDVVTTGFYRPNLNLLVEPVTGFNKQRRLVAWLAD-----KGGQPT 230
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
+ K E ++ +L +YH+G+ + R IQ F ++ +VAT+AFG
Sbjct: 231 IVYVTQQKTAEQ--VAEHLAQRGFPASAYHAGMAHELRESIQRRFMEGELNCIVATIAFG 288
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK D+ V+HY LP+S+E Y QEIGRAGRDG+ S C + + + L++ +Y D
Sbjct: 289 MGIDKADIRNVVHYDLPKSVENYSQEIGRAGRDGQPSDCLVLANRDSLSVLQNFVYGDTP 348
Query: 544 DEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLL 603
+ I L ++ G G L+ S + +I++ + TLL LEL I +
Sbjct: 349 EHDGIRCVLDELRQAGA---GGQWELMLNQLSDQSNIRQLPLKTLLVQLELRGI----IA 401
Query: 604 PELKVTCTLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGAT 657
P F + P +L ++ + V I+ S + D + GA
Sbjct: 402 PRFAYFAEYRFKYLLEPEVLVTRFEGERRQFVEAIVHTSARARTWCTLDFDMLYQQHGAD 461
Query: 658 TIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLD 717
V L + +G I E K Y +++ D ALS L + + E ++ +++
Sbjct: 462 RGRVVKALEYFQEKGWIELESKQMTDVYALLDANFDAEALSEELHAYFKQHEASEITRIE 521
Query: 718 RMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
M A+F CL + + YF GD N P + G S
Sbjct: 522 NML--ALFE--------------SAECLSQRLATYF-GDAN--APQRCGHCS 554
>gi|424069837|ref|ZP_17807281.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|407993802|gb|EKG34430.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
Length = 644
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 190/581 (32%), Positives = 285/581 (49%), Gaps = 36/581 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q +E+A+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQREFNIPQTLLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRRLVEWLNERRG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L + + +YH+G+P R IQ+ F ++ +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAAHLEQHGLPASAYHAGLPNDQRESIQKQFMGGRLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G G+ L+ A +I++ + TLL LEL I E +
Sbjct: 355 VLEDLL--GARHDGQWEFLLGPLADLS-NIRQLPLKTLLVQLELRGIIAPRYAYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L ++ + V ++ S + D + GA V L
Sbjct: 412 KFLLQPQDLMARFEGERREFVQALIDTSNRARTWATVDFEAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L + + E +V ++ M + VFA D
Sbjct: 472 QEKGWIELESKQMTEVYSLLRSDFDAQALSIELHDYFAHHEATEVARIHTMLN--VFASD 529
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + YF GD N P + G S
Sbjct: 530 --------------QCLTHRLARYF-GDHNA--PERCGHCS 553
>gi|54302187|ref|YP_132180.1| ATP-dependent DNA helicase RecQ [Photobacterium profundum SS9]
gi|46915608|emb|CAG22380.1| putative putative ATP-dependent DNA helicase RecQ [Photobacterium
profundum SS9]
Length = 641
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 190/592 (32%), Positives = 286/592 (48%), Gaps = 41/592 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+DS R GQ + I VL+ +S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 6 LKDYFGFDSLRKGQEDVITRVLNGQSAAAIFPTGSGKSLCYQLPAVQLPHLTLVISPLLA 65
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SSQ +E + ++ ++ G KVL +S ER N F F
Sbjct: 66 LMKDQLDFLRSKKIPAASIDSSQTWDESQQVMQGVRNGETKVLMISVERLKNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ +SL+VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT ++D+
Sbjct: 125 SQVQVSLLVVDEAHCISEWGHNFRPDYLKL--PYYRQLLNIPQVLLLTATATPNVIQDMS 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH--YYILQIS 429
+ I ++I R NL L++ L+ + + Y +V H Y LQ +
Sbjct: 183 TKFGIAEQDIIVTGFYRPNLDLTI-LAAEDENKLPTLY--KVLGHHNDQPTIIYVTLQQT 239
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ ++ L ++YH+G+ R IQ F S I +VAT+AFGMG+DK
Sbjct: 240 A-----EAVAVALNQQGYQAQAYHAGMDNDRRQAIQHEFMSGNINCIVATIAFGMGIDKS 294
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
++ V+H+ LP+S+E Y QEIGRAGRDG + C + + L + +Y D D AI
Sbjct: 295 NIRKVVHFDLPKSIENYSQEIGRAGRDGENAECTVIANKAGLNVLENFVYGDTPDLDAIA 354
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELK 607
L ++ L L K+S R +K TLL LE+ +I + +
Sbjct: 355 YILNEIKNQPAAWEVMLTRLSKDSNVRLLPLK-----TLLVYLEIHKIIEPKFTYFADYR 409
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
C L + ++ + V I S + Y D + NS A V +
Sbjct: 410 FKCNLTPQEIFAHFQGERRQFVENIFACSSKARTWYTVDFEALWNSCHADRKRVITAIDY 469
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAV 727
+G IT E K Y +V D + L + E+ +++++++M +
Sbjct: 470 FGEKGWITLESKQMTDVYRVVNNQYDVNEEAKKLFDLFRQKESSEIKRINKM-------L 522
Query: 728 DVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVF 779
+ E TH CL ++ YF D+N P + G S R DI V
Sbjct: 523 NFFENTH---------CLSHDLASYF-ADNN--APKQCGHCS-VCRGDIAVL 561
>gi|332142237|ref|YP_004427975.1| RecQ domain-containing protein [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552259|gb|AEA98977.1| RecQ domain protein [Alteromonas macleodii str. 'Deep ecotype']
Length = 679
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 216/364 (59%), Gaps = 15/364 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ ++G+ +FR+GQ EA+ +L ST+ + PTG+GKSLCYQ A LP LTLVV PL+
Sbjct: 7 ILQQLFGFSAFREGQKEAVDSLLSGHSTLAIFPTGSGKSLCYQFVATQLPHLTLVVSPLL 66
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I + S+ PE+ + + ++ G K+L VS ERF N F F
Sbjct: 67 ALMKDQLEFLHSKGIAAASIDSTLTPEQNKQVMNDVRSGQCKILMVSVERFKNERFRQ-F 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ +S++VVDEAHC+SEW HNFRP Y++L A + LN+ +L +TATAT D+
Sbjct: 126 IESVQVSMLVVDEAHCISEWGHNFRPDYLKLPA--YQKELNIPLVLLLTATATKKVKEDM 183
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVS--LSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+ I +++IQ R NL L V L N Q A +DE+ + Y LQ
Sbjct: 184 AARFAIAPTSIIQTGFYRPNLNLFVRPVLEPNKNQ----ALIDEIQKQQGAGIVYVTLQN 239
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
S + ++R+L + K+YH+G+ ++ R IQ+ F SNKI+VVVAT+AFGMG+DK
Sbjct: 240 SAED-----VARFLQQQGFAAKAYHAGLNSEVRQGIQQDFMSNKIQVVVATIAFGMGIDK 294
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
D+ VIHY LP+S+E Y QEIGR GRDG + C + + + + +Y D D+ AI
Sbjct: 295 SDIRFVIHYDLPKSIENYSQEIGRGGRDGEAANCTVLANLDGLVTIENFVYGDTPDKSAI 354
Query: 549 NKFL 552
+ +
Sbjct: 355 ERVI 358
>gi|320164476|gb|EFW41375.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 1070
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 171/517 (33%), Positives = 269/517 (52%), Gaps = 54/517 (10%)
Query: 242 GLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
+TLVV PLV+LM DQL LP + G S + + + G + VLFV+PE
Sbjct: 368 AITLVVSPLVSLMDDQLLRLPSKLAGACFHSGLSGPQKQRVMHEVLAGEVAVLFVAPETL 427
Query: 302 LNADFLSIFTATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
++ FL + + S I+ VDEAHCVS+WSHNFRP+Y+RL +S+LR RL V ILA+T
Sbjct: 428 VSESFLRLALSASFPPIAFACVDEAHCVSQWSHNFRPAYLRL-SSVLRNRLGVPAILALT 486
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV----DEVFS 415
ATATT ++ + L I L+ + + NL L V+ R +R+ + E F
Sbjct: 487 ATATTKCIQSIREHLGISPEGLVHGSPVPRNLALGVT---QERDRDRALVLLLKEREPFC 543
Query: 416 FHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
+ S Y Q+ +TD ++ L + SYH+G+P + R+ +Q F S ++RV
Sbjct: 544 HYDSVIVYCTRQV-----DTDRVALSLRVQGVDAASYHAGMPPRSRAAVQRKFMSGQLRV 598
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLR 535
+VAT+AFGMGLDK DV V+HY++P S E YVQEIGRAGRDG + CH F+ Y LR
Sbjct: 599 IVATIAFGMGLDKSDVRGVVHYNMPGSFENYVQEIGRAGRDGLPASCHAFVTRDDYLHLR 658
Query: 536 SLMYSDGVDEYAINKFLCQVF---------------TNGMNSHGKLCSLVKESASRKFDI 580
Y+D + I K L VF + G H ++ ++ E ++ DI
Sbjct: 659 RHAYADTSEFITIKKLLAMVFGTLGAATTASQDNAESEGQPKHPRIRAVCTEKVEQELDI 718
Query: 581 KEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKS---- 636
+ EV+ T+L L++ ++LLP+ + T L+ + T A++L+++
Sbjct: 719 RAEVVETIL--LQIAGKGLIELLPQFQATAVLHLQRAPATYCGPS----ASLLRRAILDA 772
Query: 637 ---ETKQ-------GQYVFDIPTVANSIGATTIDVSNQLLNL-KMRGEITYELKDPAYCY 685
KQ G++ D+P +A + G + V +L +L + RG+ + D ++
Sbjct: 773 AAASAKQTSDVATGGRFTVDLPAIATTTGLSVGVVRRELSDLPQTRGD-RVDFTDWSFLI 831
Query: 686 TIVEVPS--DFCALSAHLTKWLSEVENCKVRKLDRMF 720
+ +PS +F L + ++ +E ++RK+ +F
Sbjct: 832 VVRSLPSRLEFDGLIDAIMAHMTAMETLQLRKVQSIF 868
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 19/197 (9%)
Query: 63 AGFCFRLASFTKIQKPSLRFEN--DQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVP 120
+GF LA+ + + + + D +L S + E+ + A + ++ + +
Sbjct: 90 SGFSLTLAAAMDVAEYDVGVDGARDAALEQASREKRKAELAAVVQAMEDQRRRAEAAEQS 149
Query: 121 LPPAKLRKCNGEGNFVRLNLNNN--KRKFANKGKRNKSF---RGKLSYRRTASELELVEE 175
+ P + N GN+VRLNL N +R NK ++ F G+ + R +
Sbjct: 150 MAPRQGFGGNDNGNYVRLNLRNRHFRRGALNKPRKGGKFGRSSGRYNARMAKGDGTTTVR 209
Query: 176 AVRAVRDEASDENLGRLLRLVYGY-------DSFRDGQLEAIKMV-----LDKKSTMLVL 223
A + D L + +S + + +A+ ++ST++VL
Sbjct: 210 AQTTLGDGKDRAPFHELDVDAFAVSASSRIPESNSEERSDAVNPAGADEEAQRQSTLVVL 269
Query: 224 PTGAGKSLCYQIPAMIL 240
TGAGKSLCYQ+PA +
Sbjct: 270 STGAGKSLCYQLPAYLF 286
>gi|254445695|ref|ZP_05059171.1| ATP-dependent DNA helicase, RecQ family [Verrucomicrobiae bacterium
DG1235]
gi|198260003|gb|EDY84311.1| ATP-dependent DNA helicase, RecQ family [Verrucomicrobiae bacterium
DG1235]
Length = 640
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 197/620 (31%), Positives = 307/620 (49%), Gaps = 32/620 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+D+FR GQ ++ VL S + V PTG+GKSLCYQ+PA++L GLT+VV PL+A
Sbjct: 13 LKTVFGFDAFRPGQERIVEQVLQGNSALAVFPTGSGKSLCYQLPALMLDGLTIVVSPLIA 72
Query: 253 LMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + L S+ EE ++ GA+K+L+V+PER N F +
Sbjct: 73 LMKDQVDFLQERGVRVARLDSTLSAEESRTVYSDVRAGALKLLYVAPERISNERFFAAIE 132
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+V+DEAHC+SEW HNFRP Y++L ++ L VE +LA+TATAT T + D++
Sbjct: 133 GHA-ISLMVIDEAHCISEWGHNFRPEYLKL--AIAAKALKVERVLALTATATPTVVEDIL 189
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNE--RSAYVDEVFSFHRSSKHYYILQIS 429
EI + + R NL L+ S + + + E RS D + Y LQ +
Sbjct: 190 REFEIAPAGYVNTGFHRPNLFLAFSPTAASERMEILRSRLEDIPAG---PTIVYVTLQKT 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ L +R+ K+YH+G+ + R+ IQ+ F ++ +VVAT+AFGMG+DK
Sbjct: 247 AEEVAAGL-ARW----GYPAKAYHAGMKSDVRANIQDWFMASADGIVVATIAFGMGIDKS 301
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
D+ V HY+LP++LE Y QEIGRAGRDG+ SYC + D L + ++ D E A+
Sbjct: 302 DIRRVFHYNLPKTLENYSQEIGRAGRDGKASYCEVLGGDEDLMVLENFIFGDTPTEEAVG 361
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQYLQ-LLPELK 607
+ V + L SR+ DI+ V+ TLLT LEL G I++ E K
Sbjct: 362 ALVEYVLKQEDEFDISMYHL-----SRQTDIRPLVLSTLLTYLELEGVIKFTAPFYSEYK 416
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
+ + + ++L ++ K ++ TV ++G + +
Sbjct: 417 FRYVEKKEWVLAAFKGEPGEFLRSLLAQATAKTMWSYLNLDTVVQALGCERSRIVKAFNH 476
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA- 726
L+ G++ + +++ + ++A L +++V + L R F
Sbjct: 477 LEETGKLEVGVTGLRQGMRLLQ-RGNAAEVTAAL---MAKVARNEAGNLQRTRQVVEFLN 532
Query: 727 VDVCEKTHGC---NGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSN 783
VD C+ H L PC Y + V S A+++ FL+
Sbjct: 533 VDDCKTRHLLKYFGEELGKPC---GHCGYCQSGTVTKVVGSERGLSESEAAEVERFLEER 589
Query: 784 LNAKFTPRAVARILHGIASP 803
+ R AR L GIA+P
Sbjct: 590 PVGSKSAREAARYLCGIATP 609
>gi|406597684|ref|YP_006748814.1| RecQ domain-containing protein [Alteromonas macleodii ATCC 27126]
gi|406375005|gb|AFS38260.1| RecQ domain-containing protein [Alteromonas macleodii ATCC 27126]
Length = 663
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 188/606 (31%), Positives = 300/606 (49%), Gaps = 56/606 (9%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
SD N+ L+ ++G+ +FR+GQ +A++ +L ST+ + PTG+GKSLCYQ A LP LT
Sbjct: 3 SDPNI---LQQLFGFSAFREGQKKAVESLLGGNSTLAIFPTGSGKSLCYQFVATQLPHLT 59
Query: 245 LVVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
LVV PL+ALM DQL L I + S+ PE+ + + ++ G K+L VS ERF N
Sbjct: 60 LVVSPLLALMKDQLEFLHSKGIAAASIDSTLTPEQNKQVMNDVRSGQCKILMVSVERFKN 119
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
F F + +S++VVDEAHC+SEW HNFRP Y++L A + LN+ +L +TATAT
Sbjct: 120 ERFRQ-FIESVQVSMLVVDEAHCISEWGHNFRPDYLKLPA--YQKELNIPLVLLLTATAT 176
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D+ + ++ +N+IQ R NL L V +N+ A ++E+ + Y
Sbjct: 177 KKVKEDMAARFDVAPANIIQTGFYRPNLNLHVRPVHEPYKNQ--ALLEEIQKQKGAGIVY 234
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
LQ S + ++R L + K+YH+G+ + R IQ+ F NK++VVVAT+AFG
Sbjct: 235 VTLQNSAEE-----VARVLQQQGFAAKAYHAGLDSDVRQGIQQDFMHNKLQVVVATIAFG 289
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK D+ V+HY LP+S+E Y QEIGR GRDG+ + C + + + + +Y D
Sbjct: 290 MGIDKSDIRFVVHYDLPKSIENYSQEIGRGGRDGKAANCTVLANLDGLVTIENFVYGDTP 349
Query: 544 DEYAINKFLCQVF----------------TNGMNSHGKLCSLVKESASRKFDIKEEVMLT 587
D+ AI + + + TNG N+ + + + S S +I++ + T
Sbjct: 350 DKSAIQRVIDDISAQAPAHINSAAQNDSPTNGENNVYQWETQIN-SLSSASNIRQLPLKT 408
Query: 588 LLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLA----DKDKMVATILKKSETKQGQY 643
LL LEL + ++ L F T+L ++ + + + S K+
Sbjct: 409 LLVQLELANV--IRPLYAYFAEYKFRFISEKTTILGLFSEERARFLDAVFTHSNMKKVWG 466
Query: 644 VFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTK 703
+ D ++ GA V L L I + Y + L+ L +
Sbjct: 467 IIDFDSIYQHYGAERARVVAALEYLHEHNHIELASRLITDVYRVDYEKLQAADLAERLAR 526
Query: 704 WLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPN 763
+ +E E ++ ++ + + F ++ CL N+ YF D+ PN
Sbjct: 527 YFAENERKEIERIAAL--VSFFELNT--------------CLSYNLSAYF---DDSQAPN 567
Query: 764 KIGQSS 769
+ G S
Sbjct: 568 ECGHCS 573
>gi|444379947|ref|ZP_21179116.1| ATP-dependent DNA helicase, RecQ family [Enterovibrio sp. AK16]
gi|443675982|gb|ELT82694.1| ATP-dependent DNA helicase, RecQ family [Enterovibrio sp. AK16]
Length = 657
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 196/628 (31%), Positives = 307/628 (48%), Gaps = 35/628 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G++S R GQ ++ VL S+ + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 15 LQTVFGFESLRGGQQNVVERVLAGHSSAAIFPTGSGKSLCYQLPALHLPHLTLVISPLLA 74
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SS +E E +R ++ G K+L +S ER N F F
Sbjct: 75 LMKDQLDFLRGKGIAAASIDSSLTYDESREVMRSVKAGETKILMISVERLKNERFRQ-FI 133
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
++ ISL+VVDEAHC+SEW HNFRP Y++L A R +LN+ +L +TATAT + D+
Sbjct: 134 SSVPISLLVVDEAHCISEWGHNFRPDYLKLPA--YRTQLNIPQVLLLTATATPQVIEDMR 191
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+ I N+ R NL L+V +++E + + + + Y LQ + +
Sbjct: 192 NKFGIAPENVEVTGFYRQNLDLNVLPCAEEQKDEALLSLMQSVPLPQPTIVYVTLQQTAE 251
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
++ L ++ ++YH+G+ + DR RIQ F +I +VAT+AFGMG+DK D+
Sbjct: 252 S-----VAGKLRAAGVAAQAYHAGMVSDDRQRIQNAFMRGEINCIVATIAFGMGVDKADI 306
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
AVIHY LP+S+E Y QEIGRAGRDG S C + + + L + +Y D D AI
Sbjct: 307 RAVIHYDLPKSVENYSQEIGRAGRDGLPSVCSVLANRESVSVLENFVYGDTPDLIAIRAV 366
Query: 552 LCQVFTN--GMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQL--LPELK 607
+ ++ + G L L KES R+ +K TLL LEL I Q + +
Sbjct: 367 IDEIGSTPAGRPWEVMLTRLSKESNVRQLPLK-----TLLVYLELAGIIEPQFSYFADYR 421
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
+ + ++ + V I + S + + D + A L
Sbjct: 422 FKMLVEPEQVLNQFEGERRQFVEAIFQCSPKSRTWHSVDFDALWQGYSAERKRAVTALDY 481
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEV----ENCKVRKLDRMFHAA 723
+G I E K Y + ++ + +A L++ + ++ E ++ +++ M +
Sbjct: 482 FADKGWIELESKQMMDVYRVTQLEACQSEQAAQLSEQMHQLFLTKEASEINRVEAML--S 539
Query: 724 VFAVDVC--EKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQ 781
+F + C + H P Q RG N + K + A+++ LQ
Sbjct: 540 LFETETCLSHRLAAYFADQHAPA-QCGHCSVCRG--NVALLPKASAQAELDAAELQRLLQ 596
Query: 782 SNLNA------KFTPRAVARILHGIASP 803
L+A + + A R L GIA+P
Sbjct: 597 PLLDAAAKDGTQVSAEAATRFLCGIATP 624
>gi|405374567|ref|ZP_11028946.1| ATP-dependent DNA helicase, RecQ family [Chondromyces apiculatus
DSM 436]
gi|397086732|gb|EJJ17821.1| ATP-dependent DNA helicase, RecQ family [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 654
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 204/649 (31%), Positives = 311/649 (47%), Gaps = 61/649 (9%)
Query: 182 DEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTML-VLPTGAGKSLCYQIPAMIL 240
+ A L +LR +G FR GQ E I +L + L V PTG GKSLCYQ+PA++L
Sbjct: 9 ENAPSRPLDTVLRERFGLTGFRPGQREVIDALLGPGAAALAVFPTGGGKSLCYQLPALML 68
Query: 241 PGLTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
G+T+VV PL+ALM DQ+ L I L SSQ ++ E + ++ GAIK+L+V+PE
Sbjct: 69 DGITVVVSPLIALMKDQIDALERQGIRAAKLDSSQSLDDAREVTQALRDGAIKLLYVAPE 128
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR-LNVECILAM 358
RF N FLS+ I+L VDEAHCVSEW HNFRP Y++L + AR ++ E +LA+
Sbjct: 129 RFNNERFLSLLRELR-IALFAVDEAHCVSEWGHNFRPDYLKLAKA---ARDVSAERLLAL 184
Query: 359 TATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR 418
TATAT + +RD+ IP SN + R NL L + +R A + E +
Sbjct: 185 TATATPSVVRDICQGFGIPESNAVITGFYRQNLTLETT---PVEAEDRDALLLERLNTRP 241
Query: 419 SSKH--YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
Y LQ + + T +L + ++YH+G+ ++ R ++QE + ++ +V
Sbjct: 242 PGPTIIYVTLQKTAERVAT-----FLAAKGLPAQAYHAGLESEVREQVQERWMTSGNGIV 296
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRL 534
VAT+AFGMG+DK +V AV HY+LP+ LE Y QEIGRAGRDG S LF DD+ L
Sbjct: 297 VATIAFGMGIDKANVRAVYHYNLPKGLESYSQEIGRAGRDGAPSVVELFACPDDVPT--L 354
Query: 535 RSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
+ + D AI + ++ G L +L S + D+++ V+ T LT LEL
Sbjct: 355 ENFAHGDTPTAEAIQGLVTELLDMGPELSLNLYAL-----STQHDVRQLVLRTALTYLEL 409
Query: 595 GEI--QYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVAN 652
+ Q KV + + ++ K + + ++ + Y + VA
Sbjct: 410 EGVLRQGTPYFVGYKVQPLVTLEELVGRFKGERAKFLRDVFAAAKKGRTWYTLEPTVVAE 469
Query: 653 SIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCK 712
S+ V L L+ +G + ++ +P YT + ALS L + + E +
Sbjct: 470 SLQQPRERVVKALEYLQEQGLVLTQVTEPRQHYTRLHSDKGADALSTLLVRRFQQREAQE 529
Query: 713 VRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYF--------------RGDDN 758
V ++ + HT C ++ +F R +
Sbjct: 530 VARVQAVLKLVT----------------HTGCQSNALVSHFGQWREAPCGHCTFCRTGEA 573
Query: 759 CDVPNKIGQSSPFLRADIKVF---LQSNLNAKFTPRAVARILHGIASPA 804
+P + S + D+ F + + A PR AR L G++SPA
Sbjct: 574 QVLPATRPRPSLPAKLDVAAFRALVARHPEALSHPRQSARFLCGLSSPA 622
>gi|443473786|ref|ZP_21063807.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas
pseudoalcaligenes KF707]
gi|442904721|gb|ELS29636.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas
pseudoalcaligenes KF707]
Length = 647
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 192/585 (32%), Positives = 291/585 (49%), Gaps = 36/585 (6%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
L L+R V+G+D FR GQ AI+ VL +S + PTG+GKSLCYQ+PA+ LP LTLVV
Sbjct: 3 LATLVR-VFGHDRFRPGQEAAIRAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVVS 61
Query: 249 PLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL+ALM DQL L I + S+Q EE AE + + G +K+L +S ER N F
Sbjct: 62 PLLALMQDQLAFLHAHGIAAASIDSAQSREETAEVMTRARSGELKILMISVERLKNERFR 121
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
F ISL+VVDEAHC+SEW HNFRP Y++L + + + +L +TATAT +
Sbjct: 122 H-FIRQVPISLLVVDEAHCISEWGHNFRPDYLKL--PEYQRQFGIPQVLLLTATATPRVI 178
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSA-YVDEVFSFHRSSKHYYIL 426
D+ + I +++I R NL L V + + ER A ++ E +++ Y L
Sbjct: 179 ADMQAKFAIAETDVITTGFYRPNLNLLVEPVASAAKAERLARWLAERPG--QAAIVYVTL 236
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
Q + + ++ L I ++YH+G+P+++R +Q F + +IRV+VAT+AFGMG+
Sbjct: 237 QKTAEE-----VAERLGGQGIVARAYHAGMPSEEREALQRRFMAGEIRVMVATIAFGMGI 291
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK D+ V+HY LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D +
Sbjct: 292 DKADIRQVVHYDLPKSVENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELA 351
Query: 547 AINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLP 604
I L ++ + G L+ + S + +I+ + TLL LEL I
Sbjct: 352 GIRLVLDELAAAARS--GDRWELMLGALSDQSNIRPLPLKTLLVQLELRGIIAPLFAYFA 409
Query: 605 ELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
E + L ++ + V ++ S + D + A V
Sbjct: 410 EYRFKYLLEPEALLDRFEGERRQFVQALVSTSARARTWCTVDFDRLHREHAAERARVVKA 469
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + RG I E K Y +++ D L+A L + E ++ ++ M A+
Sbjct: 470 LDFFQERGWIELESKQMTEVYALLQPHFDPATLAAELHGYFRRQEESEITRIHAML--AL 527
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA + CL + YF GD D P++ G S
Sbjct: 528 FASE--------------DCLSAQLARYF-GDH--DAPDRCGHCS 555
>gi|148979982|ref|ZP_01815822.1| DNA helicase [Vibrionales bacterium SWAT-3]
gi|145961505|gb|EDK26808.1| DNA helicase [Vibrionales bacterium SWAT-3]
Length = 644
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 192/638 (30%), Positives = 308/638 (48%), Gaps = 59/638 (9%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+DS R+GQ + I VL ST + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 6 LKQVFGFDSLRNGQKQVIDNVLSGYSTAAIFPTGSGKSLCYQLPALELPHLTLVISPLLA 65
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SSQ + + ++ ++ G K+L +S ER N F F
Sbjct: 66 LMKDQLAFLHSKGISAAAIESSQDRQTTQQVMQSVRSGDTKILMISVERLKNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + +LN+ +L +TATATT+ ++D+
Sbjct: 125 SQVPISLLVVDEAHCISEWGHNFRPDYLKLPQ--YQKQLNIPQVLLLTATATTSVIQDMK 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
S I ++ R NL LS+ N+ + V++ + + Y LQ +
Sbjct: 183 SKFNIDEDRIVVTGFYRQNLDLSIQPCKQANKLESLCSVVNQ--AAQAPTIVYVTLQQTA 240
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+++++ L + ++ +YH+G+ ++R IQ+ F ++ + +VAT+AFGMG+DK +
Sbjct: 241 -----EMVAQQLRNAGVNAVAYHAGLKPENRDAIQQQFMNDDVHCIVATIAFGMGVDKSN 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + ++ D D +I
Sbjct: 296 IRRVIHFDLPKSIENYSQEIGRAGRDGQASECILLANKHGLSTLENFVFGDTPDNISIQA 355
Query: 551 FLCQVFTNGM--NSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L +++ N S ++ SR+ +I++ + TLL LE+ + + P+
Sbjct: 356 VLREIYENQNIGPSGANQWEIMLNQLSRESNIRQLPLKTLLVYLEIEGV----IEPKYSY 411
Query: 609 TCTLNFHKTTP------TLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F P ++ V I + S + D + A V
Sbjct: 412 FADYKFKFIRPKQQICEQFQGERRNFVEAIFQCSPQARVWCQVDFEALWAHFQADRQRVI 471
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
+ +G I E K Y I + LS LT EN ++ +L++M
Sbjct: 472 AAIDYFNEQGWIELESKQITDVYAIHNTSEEMMQLSERLTNLFKAKENSEINRLNQML-- 529
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD------NCDVPNKIGQSSPFLRADI 776
+ F D CL + YF ++ +C V GQ + D+
Sbjct: 530 SFFEAD--------------SCLSSRLASYFADNEAPKACGHCSVCR--GQVATLPSVDV 573
Query: 777 K--------VFLQSNLNAK---FTPRAVARILHGIASP 803
+ ++ ++A T A+ R L GIA+P
Sbjct: 574 ESVDDETVMTWIHEFISASQQLITDEAITRFLCGIATP 611
>gi|392423025|ref|YP_006459629.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
stutzeri CCUG 29243]
gi|390985213|gb|AFM35206.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
stutzeri CCUG 29243]
Length = 646
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 184/564 (32%), Positives = 283/564 (50%), Gaps = 30/564 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
LR +GYD FR GQ +AI+ V+ +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 6 LRQTFGYDGFRPGQDQAIRAVVAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 65
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q E+ +ET+ + G +K+L +S ER N F + F
Sbjct: 66 LMQDQLAFLHRRDIAAASIDSAQSREQASETMARAKSGDLKILMISVERLKNERFRN-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATAT + D+
Sbjct: 125 SQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQVLLLTATATPPVIADMQ 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V +S N+Q ++ + +S + +
Sbjct: 183 AKFSIAPDDVVTTGFYRPNLNLLVEPVSDFNKQRRLVEWLGD-----KSGQPTIVYVTQQ 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K E I+ +L +YH+G+ + R IQ F + ++ +VAT+AFGMG+DK D
Sbjct: 238 KTAEQ--IAEHLAQRGFPASAYHAGMAHELRESIQRRFMAGELNCIVATIAFGMGIDKAD 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN- 549
+ V+HY LP+S+E Y QEIGRAGRDG S C + + + L++ +Y D + I
Sbjct: 296 IRNVVHYDLPKSVENYSQEIGRAGRDGNASDCLVLANRDSLSVLQNFVYGDTPEREGIRC 355
Query: 550 --KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELK 607
L Q G+ L+ S + +I++ + TLL LEL I + P
Sbjct: 356 VLDELLQAAAPDQKGSGQW-ELMLNQLSDQSNIRQLPLKTLLVQLELRGI----IAPRFA 410
Query: 608 VTCTLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDV 661
F + P +L ++ + V I+ S + D + GA V
Sbjct: 411 YFAEYRFKYLLEPEVLIAKFEGERRQFVEAIVHSSARARTWCTLDFDALYQQHGADRGRV 470
Query: 662 SNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFH 721
L + +G I E K Y +++ D LS L ++ + E ++ ++D M
Sbjct: 471 VKALEYFQEKGWIELESKQMTDVYALLDPDFDAEGLSIELHEYFKQHEASEITRIDNML- 529
Query: 722 AAVFAVDVC--EKTHGCNGSLHTP 743
A+F C ++ G G L P
Sbjct: 530 -ALFESSECLSQRLAGYFGDLQAP 552
>gi|410862528|ref|YP_006977762.1| RecQ domain-containing protein [Alteromonas macleodii AltDE1]
gi|410819790|gb|AFV86407.1| RecQ domain-containing protein [Alteromonas macleodii AltDE1]
Length = 679
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 215/364 (59%), Gaps = 15/364 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +G+ +FR+GQ EA+ +L ST+ + PTG+GKSLCYQ A LP LTLVV PL+
Sbjct: 7 ILQQRFGFSAFREGQKEAVDSLLSGHSTLAIFPTGSGKSLCYQFVATQLPHLTLVVSPLL 66
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I + S+ PE+ + + ++ G K+L VS ERF N F F
Sbjct: 67 ALMKDQLEFLHSKGIAAASIDSTLTPEQNKQVMNDVRSGQCKILMVSVERFKNERFRQ-F 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ +S++VVDEAHC+SEW HNFRP Y++L A + LN+ +L +TATAT D+
Sbjct: 126 IESVQVSMLVVDEAHCISEWGHNFRPDYLKLPA--YQKELNIPLVLLLTATATKKVKEDM 183
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVS--LSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+ I +++IQ R NL L V L N Q A +DE+ + Y LQ
Sbjct: 184 AARFAIAPTSIIQTGFYRPNLNLFVRPVLEPNKNQ----ALIDEIQKQQGAGIVYVTLQN 239
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
S + ++R+L + K+YH+G+ ++ R IQ+ F SNKI+VVVAT+AFGMG+DK
Sbjct: 240 SAED-----VARFLQQQGFAAKAYHAGLNSEVRQSIQQDFMSNKIQVVVATIAFGMGIDK 294
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
D+ VIHY LP+S+E Y QEIGR GRDG + C + + + + +Y D D+ AI
Sbjct: 295 SDIRFVIHYDLPKSIENYSQEIGRGGRDGEAANCTVLANLDGLVTIENFVYGDTPDKSAI 354
Query: 549 NKFL 552
+ +
Sbjct: 355 ERVI 358
>gi|424074632|ref|ZP_17812040.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|407993913|gb|EKG34532.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
Length = 644
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 190/581 (32%), Positives = 283/581 (48%), Gaps = 36/581 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q +E+A+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQTLLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAVAPEDVITTGFYRANLHLWVKPVSGRDKRRLLVEWLNERRG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAAHLEQNGLPASAYHAGLPNDQRESIQKQFMGGHLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G G+ L+ A +I++ + TLL LEL I E +
Sbjct: 355 VLEDLL--GARHDGQWEFLLGPLADLS-NIRQLPLKTLLVQLELRGIIAPRYAYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L ++ + V ++ S + D + GA V L
Sbjct: 412 KFLLQPQDLMARFEGERREFVQALIDTSNRARTWATVDFEAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L + + E +V ++ M VFA D
Sbjct: 472 QEKGWIELESKQMTEVYSLLRSDFDAQALSIELHDYFAHHEATEVARIHTMLD--VFASD 529
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + YF GD N P + G S
Sbjct: 530 --------------QCLTHRLARYF-GDHNA--PERCGHCS 553
>gi|119947001|ref|YP_944681.1| 23S rRNA Gm2251-methyltransferase [Psychromonas ingrahamii 37]
gi|119865605|gb|ABM05082.1| ATP-dependent DNA helicase, RecQ-like protein [Psychromonas
ingrahamii 37]
Length = 636
Score = 266 bits (680), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 161/429 (37%), Positives = 245/429 (57%), Gaps = 30/429 (6%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+LL+ +G+ +FR GQ + I+ + S + PTG+GKSLCYQ+PA+ LP LTLVV PL
Sbjct: 3 QLLQQYFGFSTFRAGQEKVIQALFAGHSAAAIFPTGSGKSLCYQLPALHLPHLTLVVSPL 62
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
+AL+ DQL L I + S Q P E ++ + I G +K+LF+S ER LN++ +
Sbjct: 63 LALIQDQLEFLQSKGISAASIHSLQTPAESSQVYKDIAGGQVKILFISVER-LNSERFRL 121
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F ISL+VVDEAHC+SEW HNFRP Y++L +L R N+ +L +TATAT + D
Sbjct: 122 FLKKIPISLLVVDEAHCISEWGHNFRPDYLKL--ALYRREFNIPQVLLLTATATQKVIAD 179
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGN-NRQNERSAYVDEVFSFHRSSKHYYILQI 428
+ + I N+ R NL LSV G+ ++ N ++D+ ++ Y LQ
Sbjct: 180 MGNKFAIDADNITLTGSYRANLNLSVLGVGSFDKLNTLLPWLDD--RKQQAGIIYVTLQK 237
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + +++ L + + ++YH+G+ + R IQ+ F S ++ ++VAT+AFGMG+DK
Sbjct: 238 TAEE-----VAKQLSSSGVPAQAYHAGMNGEQRQSIQQQFMSGELPLIVATIAFGMGIDK 292
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
D+G V+HY LP+S+E Y QEIGRAGRDGR + C + + L + +Y+D + AI
Sbjct: 293 SDIGFVVHYDLPKSIENYAQEIGRAGRDGRPADCLVLANKNNLNTLENFVYADTPEPSAI 352
Query: 549 NKFLCQVF-TNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-----------GE 596
+ L ++ TNG +V S S + +I+ + TLL LEL E
Sbjct: 353 DFVLNEIGQTNGQ------WEMVMNSLSSESNIRLLTLKTLLVYLELEGLLQPAYSYYAE 406
Query: 597 IQYLQLLPE 605
+Y L+PE
Sbjct: 407 YKYKLLVPE 415
>gi|404493695|ref|YP_006717801.1| helicase [Pelobacter carbinolicus DSM 2380]
gi|77545730|gb|ABA89292.1| helicase, putative [Pelobacter carbinolicus DSM 2380]
Length = 637
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 195/640 (30%), Positives = 321/640 (50%), Gaps = 56/640 (8%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
+ + R L+ +G+ +FR GQ I +L S + + PTG GKSLCYQ+PA+++ GLTLV
Sbjct: 4 QTIHRCLQEKFGFSTFRPGQEAVIDSLLAGHSALAIFPTGGGKSLCYQLPALLMDGLTLV 63
Query: 247 VCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQ+ L I L SS +E+ R + G++K+L+++PER N
Sbjct: 64 ISPLIALMKDQVDALRERGIMAARLDSSIGADEIRTIYRDLADGSLKILYIAPERLSNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
FL I+L+ VDEAHC+SEW HNFRP Y+++ + + L V +LA+TATAT
Sbjct: 124 FLHRLQGRP-IALLAVDEAHCISEWGHNFRPEYLKI--ARMAEELKVGRVLALTATATPD 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D+ A I ++ IQ + R NL L+VS ++ ++ + Y
Sbjct: 181 VADDIRRAFHIADNDQIQTSFHRPNLHLTVSPCPAPQRRQQLLQRLRQRPVE-PTIVYVT 239
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
LQ + + I+ +L D I ++YH+G+ ++R+ +Q F ++ + VVVAT+AFGMG
Sbjct: 240 LQKTAEQ-----IAAFLADEGIRARAYHAGLKTEERTEVQNAFMADDLHVVVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGV 543
+DK D+ A+ HY+LP++LE Y+QEIGRAGRDG ++C +F DD+T L + Y D
Sbjct: 295 IDKADIRAIYHYNLPKTLENYMQEIGRAGRDGNDAHCEIFACADDLTV--LANFSYGDTP 352
Query: 544 DEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLL 603
A+ + + + S+ + +FDI+ V+ T+ T LEL + L+
Sbjct: 353 VPDALASLVEYLL-----DQSETFSVSHYELAGRFDIRPLVIATIFTYLELNGV--LRAT 405
Query: 604 PELKVTCTLNFHKTTPTLLADKDKMVATILKK--SETKQGQYVFDIP--TVANSIGATTI 659
+ + F+++ ++A D L+ + + G+ + A +
Sbjct: 406 GPFYDSYKVRFNRSPDKIIAGFDPQRGAFLRDLFATARPGRIWSHLTPDKSAAELNQPRS 465
Query: 660 DVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRM 719
++ + L+ G++T ++ + Y D L A L + +E E R + R+
Sbjct: 466 RITAAIGYLEEEGDLTTQVTGLRHGYRFQTPDIDSPKLIADLQQTFAERER---RNISRL 522
Query: 720 FHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYF--RGDDNCDVPNKI--GQSSPFLR-- 773
+A CL + +LDYF + D +C+ ++ G+ P R
Sbjct: 523 HGVLAYAE-------------QKSCLTRQLLDYFGEKTDADCNDCSRCQGGERQPLPRTA 569
Query: 774 --------ADIKVFLQS-NLNAKFTPRAVARILHGIASPA 804
A+I +++ N A PR +AR L GI+SPA
Sbjct: 570 PLAPGTAEAEIGRRVRAENHPALSHPRQLARFLCGISSPA 609
>gi|403377026|gb|EJY88507.1| ATP-dependent DNA helicase, RecQ family protein [Oxytricha
trifallax]
Length = 1388
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 220/367 (59%), Gaps = 35/367 (9%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKK-STMLVLPTGAGKSLCYQIPAMILPGL 243
SDE ++L+ +G++SFR GQLEAIK++L KK + ++VL TG GKSL YQ +M + GL
Sbjct: 620 SDEEYTKILKDKFGHESFRAGQLEAIKILLVKKENALVVLATGGGKSLVYQYVSMFMNGL 679
Query: 244 TLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
++V PL++LM DQL LP + G L+S Q + E I+ IQ IKVLF+SPE+F
Sbjct: 680 IIIVTPLISLMTDQLGKLPDFLPGASLNSHQNYQLKKEVIKAIQDKHIKVLFISPEKFFM 739
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVE----CILAMT 359
DF I++V VDE HC SEWSHNFRP+Y++L +++ ++ + +L +T
Sbjct: 740 EDFSKY---NRKIAMVCVDEIHCASEWSHNFRPAYLKLH-DMIKEKVTSQKDSCVVLGLT 795
Query: 360 ATATTTTLRDVMSALEIPL-SNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFH 417
ATAT T + V + +++ + L R NL LS++ D++ S
Sbjct: 796 ATATKATQKSVCKIFNVQYPEHIVTEPNLSRMNLSLSITRD-----------TDKLKSLM 844
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
+ L SG + N I+ +YH+G + R IQ+ F +N IRV+V
Sbjct: 845 Q-------LMSSGS------FKKLTSQNGINSSAYHAGKSDQQRQIIQKNFINNNIRVLV 891
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
T+AF MG+DK D+ +VIHY +P+S+E YVQEIGRAGRDG+L+ CH+FL++ ++ +R L
Sbjct: 892 CTIAFSMGIDKSDIQSVIHYDMPKSIENYVQEIGRAGRDGKLARCHMFLNNEDFYLIRRL 951
Query: 538 MYSDGVD 544
+ +D +D
Sbjct: 952 ILTDLLD 958
Score = 47.0 bits (110), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 14/182 (7%)
Query: 570 VKESASRKFDIKEEVMLTLLTCLELG--EIQYLQLLPELKVTCTLNFHKTTPTLLADKDK 627
VKE+ S D+K+EV+LT+L LE E ++ L L + FH P +A ++
Sbjct: 1052 VKETLSL-LDLKKEVVLTMLNSLEKTSEEKRFFSLEGVLPDKIGMRFHSKRPEQMALENP 1110
Query: 628 MVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK--MRGEITYELKDPAYCY 685
+ L+ ++ QG Y + +A + + L +++ +I+Y+ + ++
Sbjct: 1111 FIKKFLEIAKEHQGVYNVSLQRLAYELNMNPFHIPKILYSMQSTQGNDISYDTDNESFVL 1170
Query: 686 TIVEVPS--DFCALSAHLTKWLSEVENCKVRKLDRMFHAA----VFAVDVC---EKTHGC 736
I +PS LS + K +E V+KL+ M+ A + VDV EK
Sbjct: 1171 KICHIPSGGQTLELSQDMLKETRRIERNMVQKLNCMYFVARRVSLINVDVMLKKEKQEAD 1230
Query: 737 NG 738
NG
Sbjct: 1231 NG 1232
>gi|387891519|ref|YP_006321816.1| RecQ familyATP-dependent DNA helicase [Pseudomonas fluorescens
A506]
gi|387164409|gb|AFJ59608.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas fluorescens
A506]
Length = 645
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 190/585 (32%), Positives = 296/585 (50%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ E + VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LQQVFGYPHFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q +E + + + G +K+L +S ER N F +
Sbjct: 65 LMQDQLGFLQRHGISAGSIDSAQSRDEANDVMARARSGELKILMISVERLKNERFRNFLN 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 125 SVQ-ISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V +SG++++ ++ ++ S Y LQ +
Sbjct: 182 AKFAIAAEDVVTTGFYRPNLNLLVEPVSGHDKRRRLVEWMKA--RANQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L + I ++YH+G+P + R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLNRHGIQAEAYHAGLPHEKREGIQQRFMGGRSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQDGIFR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ S G+ L++ S S +I+E + TLL LEL + + P
Sbjct: 355 VLEEL--QSARSEGQWEFLLR-SLSDHSNIRELPLKTLLVQLELKGV----IAPRYAFYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + VA I++ + + D + A V
Sbjct: 408 EYRFKYLIEPEALLARFSGERQQFVAAIIQVCKRAKTWATVDFDALYQQHNAERSRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G I E K Y++++ D ALSA L + E +V ++ M +
Sbjct: 468 LDYFQEQGLIELESKQMTEVYSLLDTHFDPHALSAELYTGFKQHEVTEVARIHAML--DL 525
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA D CL + + YF GDDN P + G S
Sbjct: 526 FATD--------------HCLGQRLAHYF-GDDNA--PQRCGHCS 553
>gi|423689375|ref|ZP_17663895.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas fluorescens
SS101]
gi|388000738|gb|EIK62067.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas fluorescens
SS101]
Length = 645
Score = 265 bits (678), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 188/585 (32%), Positives = 296/585 (50%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ E + VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LQQVFGYPHFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q +E + + + G +K+L +S ER N F +
Sbjct: 65 LMQDQLGFLQRHGISAGSIDSAQSRDEANDVMARARSGELKILMISVERLKNERFRNFLN 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 125 SVQ-ISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V +SG++++ ++ ++ S Y LQ +
Sbjct: 182 AKFAIAAEDVVTTGFYRSNLNLLVEPVSGHDKRRRLVEWMKA--RANQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L + I ++YH+G+P + R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLNRHGIQAEAYHAGLPHEKREGIQQRFMGGRSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQEGIRR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ S G+ L++ S S +I+E + TLL LEL + + P
Sbjct: 355 VLEEL--QAARSEGQWEFLLR-SLSDHSNIRELPLKTLLVQLELKGV----IAPRYAFYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + VA I++ + + D + A V
Sbjct: 408 EYRFKYLIEPEALLARFSGERQQFVAAIIQVCKRAKTWATVDFDALYQQHNAERSRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G I E K Y++++ D ALSA L + E +V ++ M
Sbjct: 468 LDYFQEQGLIELESKQMTEVYSLLDTDFDPQALSAELYTGFKQHEVTEVARIHTM----- 522
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+D+ H CL + + YF GD+N P + G S
Sbjct: 523 --LDLFATEH---------CLGQRLARYF-GDENA--PQRCGHCS 553
>gi|398998389|ref|ZP_10701166.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM21]
gi|398120580|gb|EJM10236.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM21]
Length = 642
Score = 265 bits (678), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 189/587 (32%), Positives = 291/587 (49%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ ++ + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLQRHGIAAGSIDSAQSRDDASDVMARAKSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIADME 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIASEDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSERSG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLGHNGIQAEAYHAGLPHDQREAIQKRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGKPSDCLVLANRDSLNVLENFVYGDTPELDGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L ++ + L L +S R+ +K TLL LEL + + P
Sbjct: 355 VLDEMLAAAPEGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRGL----IAPRYAY 405
Query: 609 TCTLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + LLA ++ VA I++ S + + + A V
Sbjct: 406 YAEYRFKYLQEPDALLARFEGERKDFVAAIIQTSSRARTWATVNFDALYEQHQAERNRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G + E K Y++++ D ALSA L + ++ E ++ ++ M
Sbjct: 466 KALDYFQEKGWVELESKQMTEVYSLLQTGFDSQALSAELHAYFTQHERTEIARIHAMLD- 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + +YF GD+N P + G S
Sbjct: 525 -LFATD--------------HCLGFRLAEYF-GDENA--PRQCGHCS 553
>gi|262274631|ref|ZP_06052442.1| aTP-dependent DNA helicase RecQ family [Grimontia hollisae CIP
101886]
gi|262221194|gb|EEY72508.1| aTP-dependent DNA helicase RecQ family [Grimontia hollisae CIP
101886]
Length = 653
Score = 265 bits (678), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 192/616 (31%), Positives = 293/616 (47%), Gaps = 44/616 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+ ++S R GQ ++ VL S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 11 LHQVFSFESLRGGQQRVVEAVLGGHSAAAIFPTGSGKSLCYQLPALHLPHLTLVISPLLA 70
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SS +E E +R ++ G K+L +S ER N F F
Sbjct: 71 LMKDQLDFLRSKGIAAASIDSSLTYDESREVMRSVKAGETKILMISVERLKNERFRQ-FI 129
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A+ ISL+VVDEAHC+SEW HNFRP Y++L A R +LN+ +L +TATAT + D+
Sbjct: 130 ASVPISLLVVDEAHCISEWGHNFRPDYLKLPA--YRTQLNIPQVLLLTATATPQVIEDMR 187
Query: 372 SALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I ++ R NL L+V + NN+ + F + + + Q +
Sbjct: 188 NKFGIAQERVVVTGFYRQNLDLNVIPCAENNKAAALLELLQRAPQFQPTIVYVTLQQTA- 246
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ L N I+ ++YH+G+ ++DR RIQ+ F I +VAT+AFGMG+DK D
Sbjct: 247 -----ESVAAMLGTNGIAAQAYHAGMASEDRQRIQDGFMRGDIHCIVATIAFGMGVDKAD 301
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ AVIHY LP+S+E Y QEIGRAGRDG S C + + + L + +Y D D AI
Sbjct: 302 IRAVIHYDLPKSIENYSQEIGRAGRDGLQSVCTVLANRESVSVLENFVYGDTPDRIAIRA 361
Query: 551 FLCQVFTN--GMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI---QYLQLLPE 605
+ + G L L KES R+ +K TLL LEL I QY +
Sbjct: 362 VIDDIGATPPGSTWEVMLTRLSKESNVRQLPLK-----TLLVYLELAGIIEPQY-SYFAD 415
Query: 606 LKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQL 665
+ ++ + ++ + V I + S + + D + L
Sbjct: 416 YRFKMLVDAGQVLNQFEGERRQFVEAIFQCSPKSRTWHSVDFEALWQGYQGDRKRAVTAL 475
Query: 666 LNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVF 725
+G I E K Y ++ + + + +L R H+
Sbjct: 476 DYFAEKGWIALESKQITDVYRVINP---------------ARCQGAQAIELCREMHSLFL 520
Query: 726 AVDVCE--KTHGCNGSLHT-PCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQS 782
+ + E + H L T CL + +YF D++ P + G S R +I + ++
Sbjct: 521 SKEASEIGRVHAMLSLLETDTCLSHRLAEYF-ADEHA--PAQCGHCS-VCRGNIALLPRA 576
Query: 783 NLNAKFTPRAVARILH 798
+ P + R+L
Sbjct: 577 AVQENIVPAELQRLLQ 592
>gi|422588184|ref|ZP_16662853.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|330874369|gb|EGH08518.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
syringae pv. morsprunorum str. M302280]
Length = 642
Score = 265 bits (678), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 188/581 (32%), Positives = 285/581 (49%), Gaps = 36/581 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q ++VA+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDDVADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQALLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVEPVSGRDKRRRLVEWLNERQG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
++ I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EY-----IAAHLEQNGLPASAYHAGLPNDQRESIQKRFMGGSLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G + G+ L+ +I++ + TLL LEL + E +
Sbjct: 355 VLEDLL--GARNDGQWEFLLGPLGDLG-NIRQLPLKTLLVQLELRGLIASRYSYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L H ++ + V ++ S + + + GA V L
Sbjct: 412 KFMLQSHDLIARFEGERREFVQALIDTSSRARTWATVNFDAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L + + E +V ++ M VF+ D
Sbjct: 472 QEKGWIELESKQTTEVYSLLRSDFDPQALSTELHDYFAHHEATEVARIHAMLE--VFSSD 529
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + YF GDDN P + G S
Sbjct: 530 --------------RCLTHRLARYF-GDDNA--PAQCGHCS 553
>gi|422642471|ref|ZP_16705889.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae Cit 7]
gi|330954853|gb|EGH55113.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae Cit 7]
Length = 662
Score = 265 bits (677), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 191/581 (32%), Positives = 282/581 (48%), Gaps = 36/581 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q +E+A+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQTLLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRLLVEWLNERRG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L + + +YHSG+P R IQ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAAHLEQHGLPASAYHSGLPNDQRESIQRQFMGGHLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G G+ L+ A +I++ + TLL LEL I E +
Sbjct: 355 VLEDLL--GARHDGQWEFLLGPLADLS-NIRQLPLKTLLVQLELRGIIAPRYAYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L ++ + V ++ S + D + GA V L
Sbjct: 412 KFLLQPQDLMARFEGERREFVQALIDTSHRARTWATVDFEAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L + + E +V ++ M VFA D
Sbjct: 472 QEKGWIELESKQMTEVYSLLRSDFDAQALSIELHDYFAHHEATEVARIHTMLD--VFASD 529
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + YF GD N P + G S
Sbjct: 530 --------------QCLTHRLARYF-GDHNA--PERCGHCS 553
>gi|343508846|ref|ZP_08746152.1| ATP-dependent DNA helicase RecQ [Vibrio scophthalmi LMG 19158]
gi|342806627|gb|EGU41845.1| ATP-dependent DNA helicase RecQ [Vibrio scophthalmi LMG 19158]
Length = 654
Score = 265 bits (677), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 157/410 (38%), Positives = 240/410 (58%), Gaps = 17/410 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+ L+ V+ ++S R GQ + ++ VL +ST + PTG+GKSLCYQ+PA+ LP LTLV+ PL
Sbjct: 9 KTLKDVFAFESLRGGQQQVVEKVLLGRSTAAIFPTGSGKSLCYQLPALHLPHLTLVISPL 68
Query: 251 VALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
+ALM DQL L I + SS +E E +R ++ G K+L +S ER N F
Sbjct: 69 LALMKDQLDFLNSKGIAAASIDSSLTYDESREVMRAVKAGETKILMISVERLKNERFRQ- 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F ++ ISL+VVDEAHC+SEW HNFRP Y++L + A+LN+ +L +TATAT + D
Sbjct: 128 FISSVPISLLVVDEAHCISEWGHNFRPDYLKL--PVYCAQLNIPQVLLLTATATPQVIED 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH--RSSKHYYILQ 427
+ + I +++ R+NL L+V + E+ + E+ + R + Y LQ
Sbjct: 186 MSAKFAIKPDDIVVTGFYRENLDLNVLPCP---EVEKPNKLLELINSESPRPTIVYVTLQ 242
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + ++RYL + + +YH+G+ + R +IQ F KI V+VAT+AFGMG+D
Sbjct: 243 NTAES-----VARYLSEQGAAATAYHAGMHSDVRQKIQNDFMQGKINVIVATIAFGMGID 297
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ AVIHY LP+S+E Y QEIGRAGRDG S C + + + L + +Y D D A
Sbjct: 298 KSDIRAVIHYDLPKSVENYSQEIGRAGRDGNTSICSVLANRESLSVLENFVYGDTPDLAA 357
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
I+ + ++ G G+ ++ + SR +I++ + TLL LEL ++
Sbjct: 358 IHAVIDEI---GQTESGQSWEVMLNNLSRDCNIRQLPLKTLLVYLELEKV 404
>gi|403373195|gb|EJY86515.1| ATP-dependent DNA helicase, RecQ family protein [Oxytricha
trifallax]
Length = 1389
Score = 265 bits (677), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 220/367 (59%), Gaps = 35/367 (9%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKK-STMLVLPTGAGKSLCYQIPAMILPGL 243
SDE ++L+ +G++SFR GQLEAIK++L KK + ++VL TG GKSL YQ +M + GL
Sbjct: 621 SDEEYTKILKDKFGHESFRAGQLEAIKILLVKKENALVVLATGGGKSLVYQYVSMFMNGL 680
Query: 244 TLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
++V PL++LM DQL LP + G L+S Q + E I+ IQ IKVLF+SPE+F
Sbjct: 681 IIIVTPLISLMTDQLGKLPDFLPGASLNSHQNYQLKKEVIKAIQDKHIKVLFISPEKFFM 740
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVE----CILAMT 359
DF I++V VDE HC SEWSHNFRP+Y++L +++ ++ + +L +T
Sbjct: 741 EDFSKY---NRKIAMVCVDEIHCASEWSHNFRPAYLKLH-DMIKEKVTSQKDSCVVLGLT 796
Query: 360 ATATTTTLRDVMSALEIPL-SNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFH 417
ATAT T + V + +++ + L R NL LS++ D++ S
Sbjct: 797 ATATKATQKSVCKIFNVQYPEHIVTEPNLSRMNLSLSITRD-----------TDKLKSLM 845
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
+ L SG + N I+ +YH+G + R IQ+ F +N IRV+V
Sbjct: 846 Q-------LMSSGS------FKKLTSQNGINSSAYHAGKSDQQRQIIQKNFINNNIRVLV 892
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
T+AF MG+DK D+ +VIHY +P+S+E YVQEIGRAGRDG+L+ CH+FL++ ++ +R L
Sbjct: 893 CTIAFSMGIDKSDIQSVIHYDMPKSIENYVQEIGRAGRDGKLARCHMFLNNEDFYLIRRL 952
Query: 538 MYSDGVD 544
+ +D +D
Sbjct: 953 ILTDLLD 959
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 14/182 (7%)
Query: 570 VKESASRKFDIKEEVMLTLLTCLELG--EIQYLQLLPELKVTCTLNFHKTTPTLLADKDK 627
VKE+ S D+K+EV+LT+L LE E ++ L L + FH P +A ++
Sbjct: 1053 VKETLSL-LDLKKEVVLTMLNSLEKTSEEKRFFSLEGVLPDKIGMRFHSKRPEQMALENP 1111
Query: 628 MVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK--MRGEITYELKDPAYCY 685
+ L+ ++ QG Y + +A + + L +++ I+Y+ + ++
Sbjct: 1112 FIKKFLEIAKEHQGVYNVSLQRLAYELNMNPFHIPKILYSMQSTQGNNISYDTDNESFVL 1171
Query: 686 TIVEVPS--DFCALSAHLTKWLSEVENCKVRKLDRMFHAA----VFAVDVC---EKTHGC 736
I +PS LS + K +E V+KL+ M+ A + VDV EK
Sbjct: 1172 KICHIPSGGQTLELSQDMLKETRRIERNMVQKLNCMYFVARRVSLINVDVMLKKEKQEAD 1231
Query: 737 NG 738
NG
Sbjct: 1232 NG 1233
>gi|422598815|ref|ZP_16673070.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330989087|gb|EGH87190.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 642
Score = 265 bits (677), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 182/547 (33%), Positives = 273/547 (49%), Gaps = 29/547 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALLLPNLTLVVSPLLA 64
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
L+ DQL RH I + S+Q ++VA+ + + G +K+L +S ER N F +
Sbjct: 65 LIQDQLAFLHRH---GIAAASIDSAQSRDDVADVMARARSGELKILMISVERLKNERFRN 121
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT +
Sbjct: 122 -FIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQALLLTATATPQVIT 178
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ I ++I R NL L V +SG +++ +++E + + Y LQ
Sbjct: 179 DMQDKFAITPEDVITTGFYRANLHLWVKPVSGRDKRRLLVEWLNERRG--QPTIVYVTLQ 236
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ +H ++ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+D
Sbjct: 237 KTAEH-----VAVHLEQNGLPASAYHAGLPNDQRESIQKRFMGGSLNCIVATIAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D +
Sbjct: 292 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGGASDCLVLANRDSLNVLENFVYGDTPEREG 351
Query: 548 INKFLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLL 603
I + L + + + L L S R+ +K TLL LEL I
Sbjct: 352 IARVLEDLLDARHDGQWEFLLGPLADLSNIRQLPLK-----TLLVQLELRGIIAPRYAYF 406
Query: 604 PELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSN 663
E + L H ++ + V ++ S + + + GA V
Sbjct: 407 AEYRFKFLLQPHDLMARFEGERREFVQALIDTSSRARTWATVNFDAMYQQYGAERGRVVK 466
Query: 664 QLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAA 723
L L+ +G I E K Y+++ D ALS L + + E +V ++ M
Sbjct: 467 ALDYLQEKGWIELESKQMTEVYSVLRSNFDPQALSVELHDYFAHHEATEVARIHAMLE-- 524
Query: 724 VFAVDVC 730
VF+ D C
Sbjct: 525 VFSSDQC 531
>gi|254507841|ref|ZP_05119971.1| DNA helicase [Vibrio parahaemolyticus 16]
gi|219549214|gb|EED26209.1| DNA helicase [Vibrio parahaemolyticus 16]
Length = 643
Score = 265 bits (677), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 158/408 (38%), Positives = 232/408 (56%), Gaps = 15/408 (3%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
++ L ++G++S R GQ + I+ VL++ S+ + PTG+GKSLCYQ+PA++LP LTLVV
Sbjct: 9 DIQHTLNRIFGFESLRLGQQQVIEHVLERHSSAAIFPTGSGKSLCYQLPAVMLPHLTLVV 68
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQL L I + SSQ EE + + ++ G IKVL +S ER N F
Sbjct: 69 SPLLALMKDQLEFLKSKQIPAASIDSSQTKEESRQVMDGVKQGQIKVLMISVERLKNERF 128
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
F + ISL+VVDEAHC+SEW HNFRP Y++L L + LN+E +L +TATAT
Sbjct: 129 RQ-FISQVPISLLVVDEAHCISEWGHNFRPDYLKL--PLYQKELNIEQVLLLTATATQAV 185
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
++D+ I ++++ R NL +SV+ ++++ E V + S ++ Y+
Sbjct: 186 IQDMQQKFSIEPNHIVTTGFYRPNLDISVTPCDDDQKPE--TLVKLLQSNPKAPTIVYVT 243
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
S + ++ L D+ I+ +YH+G+ DR +IQ F I +VAT+AFGMG+
Sbjct: 244 LQSA----AEQVATLLRDSGINANAYHAGMNNDDREQIQSHFMKGDIDCIVATIAFGMGV 299
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK D+ VIHY LP+S+E Y QEIGRAGRDG LS+C L + L + +Y D +
Sbjct: 300 DKSDIRRVIHYDLPKSIENYAQEIGRAGRDGNLSHCVLLGNQNGISTLENFIYGDTPEPD 359
Query: 547 AINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
I + Q + L L E R+ +K TLL LE+
Sbjct: 360 EIQSVIEQAQQSVPQWEIVLSRLSSECNIRQLPLK-----TLLVYLEM 402
>gi|229587838|ref|YP_002869957.1| putative ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25]
gi|229359704|emb|CAY46552.1| putative ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25]
Length = 647
Score = 265 bits (677), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 190/585 (32%), Positives = 296/585 (50%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ + I VL +S + PTG+GKSLCYQ+ A++LP LT+VV PL+A
Sbjct: 5 LQQVFGYPQFRLGQEQTISAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTVVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q +E E + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLGFLQRHGISAGSIDSAQSRDEANEVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QSVQISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V +SG++++ +++E ++ S Y LQ +
Sbjct: 182 AKFAIAPDDVVTTGFYRPNLNLLVEPVSGSDKRRRLVEWMNE--RANQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L N I ++YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLNRNGIQAEAYHAGLPHDKREGIQQRFMGGRSHCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQDGIRR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ S G+ L++ S S +I+E + TLL LEL + + P
Sbjct: 355 VLDEL--QAARSEGQWEFLLR-SLSDHSNIRELPLKTLLVQLELKGV----IAPRYAFYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + VA I++ + + D + A V
Sbjct: 408 EYRFKYLIEPEALLARFSGERQQFVAAIIQVCKRAKTWATVDFDALYQQHNAERGRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G I E K Y+++ D ALS L + E +V ++ M
Sbjct: 468 LDYFQEQGLIELESKQMTEVYSLLNTDFDPQALSEALYTGFKQHEVGEVARIHAM----- 522
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+D+ H CL + + YF GD+N P + G S
Sbjct: 523 --LDLFATEH---------CLGQRLAKYF-GDENA--PQRCGHCS 553
>gi|422652983|ref|ZP_16715758.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|330966041|gb|EGH66301.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 642
Score = 265 bits (676), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 188/581 (32%), Positives = 285/581 (49%), Gaps = 36/581 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q ++VA+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDDVADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQALLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVEPVSGRDKRRRLVEWLNERQG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
++ I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EY-----IAAHLEQNGLPASAYHAGLPNDQRESIQKRFMGGSLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G + G+ L+ +I++ + TLL LEL + E +
Sbjct: 355 VLEDLL--GARNDGQWEFLLGPLGDLG-NIRQLPLKTLLVQLELRGLIASRYSYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L H ++ + V ++ S + + + GA V L
Sbjct: 412 KFMLQPHDLIARFEGERREFVQALIDTSSRARTWATVNFDAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L + + E +V ++ M VF+ D
Sbjct: 472 QEKGWIELESKQTTEVYSLLRSDFDPQALSTELHDYFAHHEATEVARIHAMLE--VFSSD 529
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + YF GDDN P + G S
Sbjct: 530 --------------RCLTHRLARYF-GDDNA--PAQCGHCS 553
>gi|422300771|ref|ZP_16388280.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
avellanae BPIC 631]
gi|407986960|gb|EKG29866.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
avellanae BPIC 631]
Length = 642
Score = 265 bits (676), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 188/581 (32%), Positives = 285/581 (49%), Gaps = 36/581 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q ++VA+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDDVADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQALLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVEPVSGRDKRRRLVEWLNERQG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
++ I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EY-----IAAHLEQNGLPASAYHAGLPNDQRESIQKRFMGGSLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G + G+ L+ +I++ + TLL LEL + E +
Sbjct: 355 VLEDLL--GARNDGQWEFLLGPLGDLG-NIRQLPLKTLLVQLELRGLIASRYSYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L H ++ + V ++ S + + + GA V L
Sbjct: 412 KFMLQPHDLMARFEGERREFVQALIDTSSRARTWATVNFDAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L + + E +V ++ M VF+ D
Sbjct: 472 QEKGWIELESKQTTEVYSLLRSDFDPQALSTELHDYFAHHEATEVARIHAMLE--VFSSD 529
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + YF GDDN P + G S
Sbjct: 530 --------------RCLTHRLARYF-GDDNA--PAQCGHCS 553
>gi|294140823|ref|YP_003556801.1| ATP-dependent DNA helicase RecQ [Shewanella violacea DSS12]
gi|293327292|dbj|BAJ02023.1| ATP-dependent DNA helicase, RecQ family [Shewanella violacea DSS12]
Length = 654
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 191/592 (32%), Positives = 289/592 (48%), Gaps = 60/592 (10%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
RLL+ +G+++FR GQL+ I +LD +S + PTG+GKS+CYQ+PA+ LP LTLVV PL
Sbjct: 12 RLLQSYFGFEAFRPGQLDVINNILDGQSAAAIFPTGSGKSICYQLPAIALPHLTLVVSPL 71
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
+ALM DQL L I + S+Q E+ E +R I+ G IK+L +S ER N F
Sbjct: 72 LALMQDQLAFLKEKGISAASIDSTQSREQANEIMRGIRSGQIKILMISVERLNNERFRQF 131
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L SL+VVDEAHC+SEW HNFRP Y++L R LN+ L +TATAT + D
Sbjct: 132 ISEIPL-SLLVVDEAHCISEWGHNFRPDYLKL--PRYRQELNIPQTLLLTATATPKVIED 188
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH-----YY 424
+ I N+ R NL L+V + + S +D + + + + Y
Sbjct: 189 MGDKFGIAKDNVSLTGFYRANLHLAV------QGVKSSVKLDTLCHWLQPRQGLAGIIYV 242
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
LQ + + L SR +I +YH+G+ + RS+IQE F S + +++VAT+AFGM
Sbjct: 243 TLQQTAEQVAEHLRSR-----NIPATAYHAGMNSDVRSKIQENFMSGRQQLIVATIAFGM 297
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD 544
G+DK D+ V+HY LP+S+E Y QEIGRAGRDG S C + + L + +Y D +
Sbjct: 298 GIDKSDIRYVVHYDLPKSIENYAQEIGRAGRDGGDSDCLVLANGDNLSTLENFVYGDTPE 357
Query: 545 EYAINKFLCQVF--TNGMNSH-GKLCSLVKESASRKFDIKEEVMLTLLTCLEL------- 594
AI L ++ TN + + G+ +V S S + +I+ + TLL LEL
Sbjct: 358 ASAIAIVLGEILKATNSQSGNAGRQWEVVLNSLSSQSNIRPLSLKTLLVYLELFNVIKPT 417
Query: 595 ----GEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTV 650
E +Y L E ++ N ++ V I S+ + + + +
Sbjct: 418 YSYFAEYKYKLLKGEEEILSVFN---------GERRDFVQAIFSSSDKAKIWFSINFDRL 468
Query: 651 ANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVEN 710
+ V + L +G I + K Y I++ +L + L S+ E
Sbjct: 469 HQDYSSDRQRVLKAINYLDEKGMIELQSKQMTQVYDILDTGFSAESLQSSLFDRFSQKER 528
Query: 711 CKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVP 762
++ +R+ H F CL + + +YF D N P
Sbjct: 529 SEI---ERINHLVSFFTS-------------NSCLSQQLAEYF-ADKNMTAP 563
>gi|307110117|gb|EFN58354.1| hypothetical protein CHLNCDRAFT_142420 [Chlorella variabilis]
Length = 1296
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 162/382 (42%), Positives = 233/382 (60%), Gaps = 13/382 (3%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
+AS+E L +LR V+G+ +FR QL +++ +L +S + ++PTG GKSLCYQ+PA++LPG
Sbjct: 475 DASEEALTGVLRGVFGHPAFRGLQLASVQRLLGGESLLAIMPTGMGKSLCYQLPAVLLPG 534
Query: 243 LTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
LTLVV PL+ALM DQ +PP + L S Q + + + + G IKVLFVSPER
Sbjct: 535 LTLVVSPLIALMHDQAASVPPPLTAAVLWSGQSRADALQVLADVAGGRIKVLFVSPERLN 594
Query: 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
N L + LVVVDEAHCV+EW H+FRP+Y RL A+L + + ILA+TATA
Sbjct: 595 NPHLLEALRPRMPLPLVVVDEAHCVAEWGHSFRPAYFRLGAALASG-VQAQRILALTATA 653
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSV--SLSGNNRQNERSAYVDEVFSFHRSS 420
T T + L IP ++++ +R NL+L V + G + Q+ R D + S
Sbjct: 654 TRATEAAIRQVLRIPAESVLRDTAVRQNLRLQVLRTAGGGSSQSSR----DRICGLLTGS 709
Query: 421 K-----HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
I+ ++ K + + ++R L IS ++YH+G ++RS ++ F ++RV
Sbjct: 710 GPLAACRSAIVYVAFKE-DANQLARLLGARGISARAYHAGKDYRERSAVECDFAGGRVRV 768
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLR 535
VVATVAFGMG++ V AV+H +LP SLEEYVQ++GRAGRDG + C LDD + RLR
Sbjct: 769 VVATVAFGMGINLARVSAVVHATLPRSLEEYVQQVGRAGRDGGEARCVALLDDADFVRLR 828
Query: 536 SLMYSDGVDEYAINKFLCQVFT 557
SL +S +D A+ FL VF+
Sbjct: 829 SLAFSGVLDLAAVRGFLEAVFS 850
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 113/283 (39%), Gaps = 50/283 (17%)
Query: 577 KFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKS 636
+ D++E+ M ++L+ LE L++LP ++ + F+ LA + +V ++L
Sbjct: 988 ELDMREDSMESVLSYLEADAAPCLRMLPATALSVKVCFYSAAAEQLAVQYPVVQSVLDSC 1047
Query: 637 ETKQGQYVFDIPTVANSIGATTID--VSNQLLNLKMRGEITYEL-KDPAYCYTIVEVPSD 693
+ V+ +P + A V QL + I++EL ++ Y I+ P+D
Sbjct: 1048 PNPR-NGVYSVPAARLAAAAQQAPGLVLQQLRGMAAGSLISFELSREEGPAYEILHTPAD 1106
Query: 694 FCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGC---NGSLHTPCLQKNIL 750
L+ + L+ V +C+V +LD + A + AV + G + L++ +
Sbjct: 1107 LDGLAERVHARLAAVLSCQVERLDVSYRALMAAVQAGQAAMGGAEEQQAAQEAALRQALE 1166
Query: 751 DYFRGD--------------------------------------DNCDVPNKIGQSSPFL 772
YF D +P K ++ P L
Sbjct: 1167 RYFDEGQAGGGSGDGGSAPPNSSAALEGAAAPGGQPHTAAALLLDTAGLPLK--RAEPAL 1224
Query: 773 RADIKVFLQSN---LNAKFTPRAVARILHGIASPAYPSTIWSK 812
+ L+ N + + RA+ARILHG+ SPA+P W K
Sbjct: 1225 LGAARAVLRRNREQAGPELSGRALARILHGVGSPAFPPDPWGK 1267
>gi|109896945|ref|YP_660200.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas atlantica T6c]
gi|109699226|gb|ABG39146.1| ATP-dependent DNA helicase, RecQ-like protein [Pseudoalteromonas
atlantica T6c]
Length = 681
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 206/327 (62%), Gaps = 11/327 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+D FR GQ + + +L+ +S++ + PTG+GKSLCYQ A+ LP LTLVV PL+ALM D
Sbjct: 23 FGFDQFRGGQQQVVSQLLNGQSSLAIFPTGSGKSLCYQFCALHLPHLTLVVSPLLALMKD 82
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
QL L I G + S+ P+E T+ ++ G IK+L VS ERF N F F +
Sbjct: 83 QLAFLQSKGIAAGSIDSTLSPDEQRSTMERVRSGEIKILMVSVERFKNERFRQ-FIDSVA 141
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
+S++VVDEAHC+SEW HNFRP Y++L RA+LN+ +L +TATAT D+
Sbjct: 142 VSMLVVDEAHCISEWGHNFRPDYLKLPD--YRAQLNIPLVLLLTATATKKVKLDMAKRFA 199
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++Q R NL L VS + +N+ + ++ + I+ ++ +H
Sbjct: 200 IEPQHVVQTGFYRKNLDLHVSATPEREKNQ------TLIQIIQAQQGCGIVYVTLQH-SA 252
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ +++ L + +S K+YH+G+ + R R+Q+ F +I+VVVAT+AFGMG+DK D+ V+
Sbjct: 253 EQVAQRLAADGVSAKAYHAGLGDEVRQRVQQDFMEGRIQVVVATIAFGMGIDKSDIRFVV 312
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYC 522
HY LP+S+E Y QEIGRAGRDG+LS+C
Sbjct: 313 HYDLPKSIENYSQEIGRAGRDGQLSHC 339
>gi|28872517|ref|NP_795136.1| ATP-dependent DNA helicase domain protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28855772|gb|AAO58831.1| ATP-dependent DNA helicase domain protein [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 642
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 178/542 (32%), Positives = 272/542 (50%), Gaps = 19/542 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q ++VA+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDDVADVMAKARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQALLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ ++ E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVEPVSGRDKRQRLVEWLHERQG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
++ I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EY-----IAAHLEQNGLPASAYHAGLPTDQRESIQKRFMGGSLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G G+ L+ +I++ + TLL LEL + E +
Sbjct: 355 VLEDLL--GARHDGQWEFLLGPLGDLG-NIRQLPLKTLLVQLELRGLIASRYSYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L H ++ + V ++ S + + + GA V L
Sbjct: 412 KFMLQPHDLMARFEGERREFVQALIDTSSRARTWATVNFDAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L ++ + E +V ++ M VF+ D
Sbjct: 472 QEKGWIELESKQTTEVYSLLRSDFDLQALSTELYEYFAHHEATEVARIHAMLE--VFSSD 529
Query: 729 VC 730
C
Sbjct: 530 QC 531
>gi|440745390|ref|ZP_20924684.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae BRIP39023]
gi|440372586|gb|ELQ09378.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae BRIP39023]
Length = 644
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 190/581 (32%), Positives = 281/581 (48%), Gaps = 36/581 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q +E+A+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQTLLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRLLVEWLNERRG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L + + +YH+G+P R IQ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAAHLEQHGLPASAYHAGLPNDQRESIQRQFMGGHLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G G+ L+ A +I++ + TLL LEL I E +
Sbjct: 355 VLEDLL--GARHDGQWEFLLGPLADLS-NIRQLPLKTLLVQLELRGIIAPRYAYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L ++ V ++ S + D + GA V L
Sbjct: 412 KFLLQPQDLMARFEGERRDFVQALIDTSHRARTWATVDFEAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L + + E +V ++ M VFA D
Sbjct: 472 QEKGWIELESKQMTEVYSLLRSDFDAQALSIELHDYFAHHEATEVARIHTMLD--VFASD 529
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + YF GD N P + G S
Sbjct: 530 --------------QCLTHRLARYF-GDHNA--PERCGHCS 553
>gi|213970782|ref|ZP_03398906.1| ATP-dependent DNA helicase domain protein [Pseudomonas syringae pv.
tomato T1]
gi|301383016|ref|ZP_07231434.1| ATP-dependent DNA helicase domain protein [Pseudomonas syringae pv.
tomato Max13]
gi|302063448|ref|ZP_07254989.1| ATP-dependent DNA helicase domain protein [Pseudomonas syringae pv.
tomato K40]
gi|302133359|ref|ZP_07259349.1| ATP-dependent DNA helicase domain protein [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213924454|gb|EEB58025.1| ATP-dependent DNA helicase domain protein [Pseudomonas syringae pv.
tomato T1]
Length = 642
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 177/542 (32%), Positives = 272/542 (50%), Gaps = 19/542 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L ++GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQIFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q ++VA+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDDVADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQALLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ ++ E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVEPVSGRDKRQRLVEWLHERQG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
++ I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EY-----IAAHLEQNGLPASAYHAGLPTDQRESIQKRFMGGSLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + G G+ L+ +I++ + TLL LEL + E +
Sbjct: 355 VLEDLL--GARHDGQWEFLLGPLGDLG-NIRQLPLKTLLVQLELRGLIASRYSYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L H ++ + V ++ S + + + GA V L
Sbjct: 412 KFMLQPHDLMARFEGERREFVQALIDTSSRARTWATVNFDAMYQQYGAERGRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L ++ + E +V ++ M VF+ D
Sbjct: 472 QEKGWIELESKQTTEVYSLLRSDFDLQALSTELYEYFAHHEATEVARIHAMLE--VFSSD 529
Query: 729 VC 730
C
Sbjct: 530 QC 531
>gi|398951513|ref|ZP_10674117.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM33]
gi|398156445|gb|EJM44864.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM33]
Length = 644
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 187/587 (31%), Positives = 288/587 (49%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q E+ ++ + + G +K+L +S ER N F F
Sbjct: 65 LMQDQLAFLQRHGISAGSIDSAQSREDASDVMARAKSGELKILMISVERLKNERFRH-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQVLLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ + S Y LQ +
Sbjct: 182 AKFAIAADDVVTTGFYRPNLNLLVEPVRGVDKRRRLVEWMSR--RADQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P R IQ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLNHNGIQAEAYHAGLPHDQREAIQRRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELDGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L ++ + + L L +S R+ +K TLL LEL + + P
Sbjct: 355 MLDEMQAAALEGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRGL----IAPRYAY 405
Query: 609 TCTLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + LLA ++ VA I++ S + + + A V
Sbjct: 406 YAEYRFKYLEEPEALLARFEGERRDFVAAIIQTSSRARTWATVNFEALHEQHQAERSRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G + E K Y++++ D AL L ++ + E+ ++ ++ M
Sbjct: 466 KALDYFQEKGWVELESKQMTEVYSVLQSGFDSAALGEELHRYFTRHEHTEIARIHAMLD- 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + +YF GD N P + G S
Sbjct: 525 -LFATD--------------RCLGYRLAEYF-GDHNA--PQQCGHCS 553
>gi|407684704|ref|YP_006799878.1| RecQ domain-containing protein [Alteromonas macleodii str. 'English
Channel 673']
gi|407246315|gb|AFT75501.1| RecQ domain-containing protein [Alteromonas macleodii str. 'English
Channel 673']
Length = 663
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 188/606 (31%), Positives = 297/606 (49%), Gaps = 56/606 (9%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
SD N+ L+ ++G+ +FR+GQ EA++ +L ST+ + PTG+GKSLCYQ A LP LT
Sbjct: 3 SDPNI---LQQLFGFSAFREGQKEAVESLLGGNSTLAIFPTGSGKSLCYQFVATQLPHLT 59
Query: 245 LVVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
LVV PL+ALM DQL L I + S+ PE+ + + ++ G K+L VS ERF N
Sbjct: 60 LVVSPLLALMKDQLEFLHSKGIAAASIDSTLTPEQNKQVMNDVRSGQCKILMVSVERFKN 119
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
F F + +S++VVDEAHC+SEW HNFRP Y++L A + LN+ +L +TATAT
Sbjct: 120 ERFRQ-FIESVQVSMLVVDEAHCISEWGHNFRPDYLKLPA--YQKELNIPLVLLLTATAT 176
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D+ + +I +N+IQ R NL L V +N+ A ++E+ + Y
Sbjct: 177 KKVKEDMAARFDIAPANIIQTGFYRPNLNLHVRPVHEPYKNQ--ALLEEIQKQKGAGIVY 234
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
LQ S + ++R L + K+YH+G+ + R IQ+ F NK++VVVAT+AFG
Sbjct: 235 VTLQNSAEE-----VARVLQQQGFAAKAYHAGLDSDVRQGIQQDFMHNKLQVVVATIAFG 289
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK D+ V+HY LP+S+E Y QEIGR GRD + + C + + + + +Y D
Sbjct: 290 MGIDKSDIRFVVHYDLPKSIENYSQEIGRGGRDCKAANCTVLANLDGLVTIENFVYGDTP 349
Query: 544 DEYAINKFLCQVF----------------TNGMNSHGKLCSLVKESASRKFDIKEEVMLT 587
D+ I + + + TNG N+ + + + S S +I++ + T
Sbjct: 350 DKSTIQRVIDDISAQAPAQINSAAHNDSPTNGENNVYQWETQIN-SLSSASNIRQLPLKT 408
Query: 588 LLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLA----DKDKMVATILKKSETKQGQY 643
LL LEL + ++ L F T+L ++ + + + S K+
Sbjct: 409 LLVQLELANV--IRPLYAYFAEYKFRFISEKTTILGLFSEERTRFLDAVFTHSNMKKVWG 466
Query: 644 VFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTK 703
+ D ++ GA V L L I + Y + L+ +L
Sbjct: 467 IVDFDSIYQHYGAERARVVAALEYLHEHNHIELASRLITDVYRVDYEKLQNADLANNLAH 526
Query: 704 WLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPN 763
+ +E E ++ ++ + F ++ CL N+ YF D+ PN
Sbjct: 527 YFAENERKEIERIAAL--VGFFELNT--------------CLSYNLSAYF---DDSQAPN 567
Query: 764 KIGQSS 769
+ G S
Sbjct: 568 ECGHCS 573
>gi|398924668|ref|ZP_10661353.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM48]
gi|398173110|gb|EJM60955.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM48]
Length = 644
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 187/585 (31%), Positives = 290/585 (49%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ ++ + + G +K+L +S ER N F F
Sbjct: 65 LMQDQLAFLQRHGIAAGSIDSAQSRDDASDVMARAKSGELKILMISVERLKNERFRH-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQVLLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 TKFAIAADDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSERPG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLNRNGIQAEAYHAGLPHDQREGIQKRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELDGIRN 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ + G+ L+ A + +I++ + TLL LEL + + P
Sbjct: 355 VLDEI--RAVAPEGQWEFLLGPLADQS-NIRQLPLKTLLVQLELRGL----IAPRYAYYA 407
Query: 611 TLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + LLA ++ VA I++ S + + + A V
Sbjct: 408 EYRFKYLQEPEALLARFEGERRDFVAAIIQTSSRARTWATVNFDALYEQHQAERSRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G + E K Y +++ D ALS L + + E ++ ++ M +
Sbjct: 468 LDYFQEKGWVELESKQMTEVYGVLQSGFDSVALSEELHGYFTRHEQTEIARIHAMLD--L 525
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA D CL + +YF GD N P + G S
Sbjct: 526 FATD--------------HCLGYRLAEYF-GDHNA--PQQCGHCS 553
>gi|87118283|ref|ZP_01074182.1| putative helicase (recQ-like) [Marinomonas sp. MED121]
gi|86165917|gb|EAQ67183.1| putative helicase (recQ-like) [Marinomonas sp. MED121]
Length = 683
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 185/563 (32%), Positives = 284/563 (50%), Gaps = 46/563 (8%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ +G+D FR GQ + ++ VL +S++ + PTGAGKSLCYQ A L G+TLVV
Sbjct: 2 NLIPALQQHFGFDQFRGGQEQCVRQVLAGQSSLAIFPTGAGKSLCYQFSATQLSGITLVV 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+AL+ DQ+ L I L SSQ P++ + +R ++ G IK+L VS ERF N F
Sbjct: 62 SPLLALIKDQVEFLQSKGIGAASLDSSQTPDQNRDIMRQVREGQIKILMVSVERFNNESF 121
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ F T ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATA
Sbjct: 122 RN-FLHTLSISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPLVLLLTATAAPKV 178
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH---- 422
RD+ + I +++Q R NL L+V + Q ++ A + H S
Sbjct: 179 KRDMAAKFAIDEQHIVQTGFYRSNLNLTVL---SVPQVDKKAALLNALQQHLSPNTNEAE 235
Query: 423 ----YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
Y LQ S + I+++L N +S ++YH+G+ ++ R +IQ+ F S K+ VVA
Sbjct: 236 PAIVYVTLQFSAEE-----IAQWLRANQVSAQAYHAGLDSERREQIQQDFMSGKLNTVVA 290
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
T+AFGMG+DK ++ VIHY LP+S+E Y QEIGRAGRDG+ S C + L + +
Sbjct: 291 TIAFGMGIDKSNIRHVIHYDLPKSIENYSQEIGRAGRDGQASNCVTLANLEGLSTLENFV 350
Query: 539 YSDGVDEYAINKFL-----CQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLE 593
Y D + +I L V + +L +L E+ R+ +K TLL LE
Sbjct: 351 YGDTPELESIAYLLDLIDQQSVMQRTLTWEMQLYALSNETNIRQLPLK-----TLLVQLE 405
Query: 594 LGEIQYLQLLPELKVTCTLNFHKTTP------TLLADKDKMVATILKKSETKQGQYVFDI 647
L I + P+ + TP AD+ + + + ++ K+ V+
Sbjct: 406 LMGI----ISPKYAYYAHFRYKFVTPMAQVLSQFDADRSAFLMQVFEATKFKK---VWGE 458
Query: 648 PTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSE 707
P L L +G I E K Y + ++ S ++ L+ + +
Sbjct: 459 PNFEFWAQEAKDRAIKALDYLSEKGLIELETKQLTQVYEVYDL-SQKEQVAVQLSDYFKQ 517
Query: 708 VENCKVRKLDRMFHAAVFAVDVC 730
E ++ ++ ++ A F D C
Sbjct: 518 KEGAEIDRIAKLI--AFFEQDTC 538
>gi|402700264|ref|ZP_10848243.1| ATP-dependent DNA helicase RecQ [Pseudomonas fragi A22]
Length = 647
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 182/542 (33%), Positives = 278/542 (51%), Gaps = 19/542 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FRDGQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRDGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q ++ + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLQRHGIAAASIDSAQSRDDASAVMARAKAGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L L+ N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQLQ--FNIPQALLLTATATPNVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
S I +++I R NL L V ++G ++ ++ E + S Y LQ +
Sbjct: 182 SKFAIAEADVITTGFYRANLNLWVEPVTGAAKRQRLVQWMGERSG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L N IS +YH+G+P R IQ F ++ +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAAHLNQNGISANAYHAGLPHDQREGIQRQFMGGQLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELQGIRC 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQ-YLQLLPELKV 608
L ++ G+ L+ A + +I++ + TLL LEL G I E +
Sbjct: 355 VLEEL--RAAIPEGQWEFLLGPLADQS-NIRQLPLKTLLVQLELRGLIAPRYAYFAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
+ ++ + V+ I++ S + + T+ + A V L
Sbjct: 412 KFLIEPDALLARFEGERQQFVSAIIQTSSRARTWATVNFDTLYSQHQADRNRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G I E K Y+++ D ALS L ++ + E ++ ++ M A+FA D
Sbjct: 472 QEKGWIELESKQMTEVYSLLLTEFDVEALSLELHEYFTAHERGEIVRIHAML--ALFASD 529
Query: 729 VC 730
C
Sbjct: 530 TC 531
>gi|392547258|ref|ZP_10294395.1| RecQ domain-containing protein [Pseudoalteromonas rubra ATCC 29570]
Length = 647
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 189/638 (29%), Positives = 308/638 (48%), Gaps = 60/638 (9%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ +FR GQ + + +++ S++ + PTG+GKSLCYQ+ A+ LP LTLV+ PL+ALM D
Sbjct: 14 FGFSAFRPGQEQTVTQLVNGHSSLAIFPTGSGKSLCYQLTALQLPNLTLVISPLLALMKD 73
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
QL L I+ L S+ E+ ++ ++ G+IKVL +S ERF N F F
Sbjct: 74 QLEFLHSKNINAASLDSTLTREQSQSVMQNVRNGSIKVLMISVERFKNERFRE-FIKQVP 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
+S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+ + +
Sbjct: 133 VSMLVVDEAHCISEWGHNFRPDYLKLPD--YRNELNIPLVLLLTATATKKVKRDMANRFD 190
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++Q R NL LSV ++ V + + + I+ ++ + +
Sbjct: 191 IKPEHIVQTGFYRANLDLSVYAYPEEQK------VQALIGYLKQQAGAGIVYVTLQQ-QA 243
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ +++ L ++ +YH+G+ R IQ F SN +V+VAT+AFGMG+DK D+ V+
Sbjct: 244 EQVAKQLQAAGVNAAAYHAGLDDSLRQSIQNDFMSNHKQVIVATIAFGMGIDKSDIRFVV 303
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQV 555
HY LP+S+E Y QEIGRAGRDG+ S C + L + +Y+D ++ +I + ++
Sbjct: 304 HYDLPKSIENYSQEIGRAGRDGQFSECITLANLDGVATLENFVYADTPEQASIQALIDEI 363
Query: 556 FTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELG---EIQYLQLLPELKVTCTL 612
+ L + + SAS+ +I+ + TLL LEL E +Y + +
Sbjct: 364 QSQQQQG---LWEMQELSASKVSNIRLLALKTLLVQLELKGVIEAKYA-FYADFRFKWLR 419
Query: 613 NFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRG 672
+ A++ + + I+ ++ K+ DI T+ +G + L L +G
Sbjct: 420 TEQEVISMFDANRQQFIQQIIANTQFKKVWGTVDIQTLVQ-LGHDRNRIVAALDYLHEQG 478
Query: 673 EITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEK 732
I E K Y + E L+ L + E E +V+++ M F ++
Sbjct: 479 HIELESKRMMQVYQVDETKLAEPDLAKELADYFLEKEQAEVKRIAAMLR--FFELNT--- 533
Query: 733 THGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQ--------------------SSPFL 772
CL N+ YF D+ + P + G S L
Sbjct: 534 -----------CLSYNLARYF---DDENAPEQCGHCSACRGQIAQLTQSKETEFPSDDTL 579
Query: 773 RADIKVFLQSNLNAKFTPR--AVARILHGIASPAYPST 808
R D+ Q + TP + R L G+ SP S+
Sbjct: 580 RNDLNALKQHLMQIGVTPSLAILTRFLTGMTSPLATSS 617
>gi|398898504|ref|ZP_10648370.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM50]
gi|398184067|gb|EJM71527.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM50]
Length = 644
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 187/588 (31%), Positives = 293/588 (49%), Gaps = 50/588 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
LM DQL RH I G + S+Q ++ ++ + + G +K+L +S ER N F
Sbjct: 65 LMQDQLAFLQRH---GIAAGSIDSAQSRDDASDVMARAKSGELKILMISVERLKNERFRH 121
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT +
Sbjct: 122 -FLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIA 178
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ + I +++ R NL L V + G +++ ++ + + S Y LQ
Sbjct: 179 DMEAKFAIAPEDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSQRPG--QPSIVYVTLQ 236
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ +H I+ +L N I ++YH+G+P + R IQ+ F + +VAT+AFGMG+D
Sbjct: 237 KTAEH-----IAEHLGRNGIQAEAYHAGLPHEQREGIQKRFMGGQSNCIVATIAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D +
Sbjct: 292 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPERDG 351
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELK 607
I L ++ G+ L+ A + +I++ + TLL LEL I + P
Sbjct: 352 IRCVLEEL--QAAVPEGQWEFLLGPLADQS-NIRQLPLKTLLVQLELRAI----IAPRYA 404
Query: 608 VTCTLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDV 661
F + LLA ++ V+ I++ S + + + A V
Sbjct: 405 YYAEYRFKYLQEPEALLARFEGERKDFVSAIIQTSSRARTWATVNFDALYEQYSAERSRV 464
Query: 662 SNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFH 721
L + +G + E K Y++++ D LSA L + ++ E ++ ++ M
Sbjct: 465 VKALDYFQEKGWVEVESKQMTEVYSLLQAAFDSQTLSAELHAYFTQHERTEIARIHAMLD 524
Query: 722 AAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + +YF GD+N P + G S
Sbjct: 525 --LFATD--------------HCLGYRLAEYF-GDENA--PKQCGHCS 553
>gi|343513467|ref|ZP_08750569.1| ATP-dependent DNA helicase RecQ [Vibrio sp. N418]
gi|342802018|gb|EGU37462.1| ATP-dependent DNA helicase RecQ [Vibrio sp. N418]
Length = 652
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/410 (38%), Positives = 239/410 (58%), Gaps = 17/410 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+ L+ V+ ++S R GQ + ++ VL +ST + PTG+GKSLCYQ+PA+ LP LTLV+ PL
Sbjct: 9 KTLKDVFAFESLRGGQQQVVEKVLLGRSTAAIFPTGSGKSLCYQLPALHLPHLTLVISPL 68
Query: 251 VALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
+ALM DQL L I + SS +E E +R ++ G K+L +S ER N F
Sbjct: 69 LALMKDQLDFLNSKGIAAASIDSSLTYDESREVMRAVKAGETKILMISVERLKNERFRQ- 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F ++ ISL+VVDEAHC+SEW HNFRP Y++L + A+LN+ +L +TATAT + D
Sbjct: 128 FISSVPISLLVVDEAHCISEWGHNFRPDYLKL--PVYCAQLNIPQVLLLTATATPQVIED 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH--RSSKHYYILQ 427
+ + I +++ R+NL L+V + E+ + E+ + R + Y LQ
Sbjct: 186 MGAKFAIKPDDIVVTGFYRENLDLNVLPCP---EVEKPNKLLELINSESPRPTIVYVTLQ 242
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + ++ YL + + +YH+G+ + R +IQ F KI V+VAT+AFGMG+D
Sbjct: 243 NTAES-----VAHYLSEQGAAATAYHAGMHSDVRQKIQNDFMQGKINVIVATIAFGMGID 297
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ AVIHY LP+S+E Y QEIGRAGRDG S C + + + L + +Y D D A
Sbjct: 298 KSDIRAVIHYDLPKSVENYSQEIGRAGRDGNTSICSVLANRESLSVLENFVYGDTPDLAA 357
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
I+ + ++ G G+ ++ + SR +I++ + TLL LEL ++
Sbjct: 358 IHAVIDEI---GQTESGQSWEVMLNNLSRDCNIRQLPLKTLLVYLELEKV 404
>gi|407367074|ref|ZP_11113606.1| ATP-dependent DNA helicase RecQ [Pseudomonas mandelii JR-1]
Length = 644
Score = 262 bits (670), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 189/587 (32%), Positives = 291/587 (49%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ ++ + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLQRHGIAAGSIDSAQSRDDASDVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQALLLTATATPKVIADME 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAPEDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSERPG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P + R IQ+ F + VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLGRNGIQAEAYHAGLPHEQREAIQKRFMGGQSNCTVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELDGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L ++ + L L +S R+ +K TLL LEL + + P
Sbjct: 355 VLDEMQAAAPEGQWEFLLGPLSDQSNIRQLPLK-----TLLVQLELRGL----IAPRYAY 405
Query: 609 TCTLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + LLA ++ VA I++ S + + + A V
Sbjct: 406 YAEYRFKYLQEPEALLARFEGERRDFVAAIIQTSSRARTWATVNFDALYEQHQAERNRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G + E K Y++++ D ALSA L + ++ E ++ ++ M
Sbjct: 466 KALDYFQEKGWVELESKQMTEVYSLLQANVDSQALSAELHAYFTQHERTEIARIHAMLD- 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + +YF GD+N P + G S
Sbjct: 525 -LFATD--------------HCLGYRLAEYF-GDENA--PRQCGHCS 553
>gi|425896958|ref|ZP_18873549.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397884343|gb|EJL00829.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 644
Score = 262 bits (670), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 188/585 (32%), Positives = 289/585 (49%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q ++ E + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLQRHGIAAASIDSAQNRDDANEVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVRISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAGQDVVTTGFYRPNLNLLVEPVRGQDKRRRLVQWMSERPG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P + R IQ F + + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLSRNGIQAQAYHAGLPHEQREAIQRQFMAGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELEGIRC 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ G G+ L+ A + +I++ + TLL LEL + + P
Sbjct: 355 VLDEL--QGAAPDGQWEFLLGPLADQS-NIRQLPLKTLLVQLELRGM----IAPRYAYFA 407
Query: 611 TLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + LLA ++ VA I++ S + + + A V
Sbjct: 408 EYRFKFLEEPQALLARFEGERRDFVAAIIETSSRARTWATVNFDALYQQHQAERNRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G + E K Y ++E D LS L + + E+ ++ ++ M A+
Sbjct: 468 LDYFQEKGWVELESKQMTEVYNLLETGFDAATLSQQLHAYFKQHESSEIARIHAML--AL 525
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA + CL + YF GDD P + G S
Sbjct: 526 FATE--------------QCLGYRLAQYF-GDDQA--PRRCGHCS 553
>gi|398965507|ref|ZP_10681019.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM30]
gi|398147019|gb|EJM35739.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM30]
Length = 642
Score = 262 bits (670), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 186/581 (32%), Positives = 287/581 (49%), Gaps = 36/581 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAIGAVLAGRSAAAIFPTGSGKSLCYQVPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLKRHGISAGSIDSAQSRDDANDVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+V+DEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVIDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQTLLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAAEDVVITGFYRPNLNLLVEPVRGQDKRRRLVDWMSERPG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P R IQ+ F + + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLGRNGIQAEAYHAGLPNDQREAIQKRFMAGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEREGIRC 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQ-YLQLLPELKV 608
L ++ G + G+ L+ A + +I+ + TLL +EL G I E +
Sbjct: 355 VLEEM--QGAAAEGQWEFLLGPLADQS-NIRTLPLKTLLVQMELRGFIAPRYAYYAEYRF 411
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L ++ VA I++ S + + + A V L
Sbjct: 412 KYLLEPEALLERFEGERRDFVAAIIQTSSRARTWATVNFEAMYTQYSAERNRVVKALDYF 471
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ +G + E K Y ++ D LSA L ++ + E +V ++ M +FA +
Sbjct: 472 QEKGWVELESKQMTEVYNVLHSDFDSAVLSAELHEYFTRHEQTEVARIHAMLE--LFATE 529
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + +YF GD N P + G S
Sbjct: 530 --------------RCLGYRLAEYF-GDHNA--PERCGHCS 553
>gi|399010320|ref|ZP_10712695.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM17]
gi|398107366|gb|EJL97367.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM17]
Length = 644
Score = 262 bits (669), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 188/587 (32%), Positives = 287/587 (48%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q ++ E + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLQRHGIAAASIDSAQSRDDANEVMARARFGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVRISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 AKFAITGQDVVTTGFYRPNLNLLVEPVRGQDKRRRLVQWMGERPG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P + R IQ F + + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLSRNGIQAQAYHAGLPHEQREAIQRQFMAGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELEGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L ++ + + L L +S R+ +K TLL LEL + + P
Sbjct: 355 VLDELQNAAPDGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRGL----IAPRYAY 405
Query: 609 TCTLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + LLA ++ VA I++ S + + + A V
Sbjct: 406 FAEYRFKFLEEPQALLARFEGERRDFVAAIIETSSRARTWATVNFDALYQQHQAERNRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G + E K Y ++E D LS L + + E+ ++ ++ M
Sbjct: 466 KALDYFQEKGWVELESKQMTEVYNLLETGFDAATLSQQLHAYFKQHESSEIARIHAML-- 523
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
A+FA + CL + YF GDD P + G S
Sbjct: 524 ALFATE--------------QCLGYRLAQYF-GDDQA--PQRCGHCS 553
>gi|399002266|ref|ZP_10704955.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM18]
gi|398125351|gb|EJM14835.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM18]
Length = 642
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 187/587 (31%), Positives = 289/587 (49%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPAILLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ ++ + + G +K+L +S ER N F F
Sbjct: 65 LMQDQLAFLQRHGIAAGSIDSAQSRDDASDVMARAKSGELKILMISVERLKNERFRH-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQALLLTATATPKVIADME 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ + + S Y LQ +
Sbjct: 182 ARFAIAPEDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSQRPG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P + R IQ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLGRNGIQAEAYHAGLPHEQREAIQRRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQSSDCLVLANRDSLNVLENFVYGDTPERDGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L ++ + L L +S R+ +K TLL LEL + + P
Sbjct: 355 VLDELQAAAPEGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRGL----IAPRYAY 405
Query: 609 TCTLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + LLA ++ V+ I++ S + + + A V
Sbjct: 406 YAEYRFKYLQEPEALLARFEGERRDFVSAIIQTSNRARTWATVNFDALYQQHSAERSRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G + E K Y++++ D ALSA L + + E ++ ++ M
Sbjct: 466 KALDYFQEKGWVELESKQMTEVYSLLQADFDSQALSAELHTYFTRHERTEIARIHAMLD- 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + +YF GD+N P + G S
Sbjct: 525 -LFATD--------------HCLGYRLAEYF-GDENA--PQRCGHCS 553
>gi|426407132|ref|YP_007027231.1| ATP-dependent DNA helicase [Pseudomonas sp. UW4]
gi|426265349|gb|AFY17426.1| ATP-dependent DNA helicase [Pseudomonas sp. UW4]
Length = 644
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 187/587 (31%), Positives = 289/587 (49%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRAGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ ++ + + G +K+L +S ER N F F
Sbjct: 65 LMQDQLAFLQRHGISAGSIDSAQSRDDASDVMARAKSGELKILMISVERLKNERFRH-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQVLLLTATATPRVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ + + S Y LQ +
Sbjct: 182 AKFAIAADDVVTTGFYRPNLNLLVEPVRGADKRRRLVEWMSQ--RADQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P + R IQ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLNRNGIQAEAYHAGLPHEQREAIQRRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELDGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
+ ++ + L L +S R+ +K TLL LEL + + P
Sbjct: 355 VMDEMQAAAPEGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRGL----IAPRYAY 405
Query: 609 TCTLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + LLA ++ VA I++ S + + A V
Sbjct: 406 YAEYRFKYLEEPEALLARFEGERRDFVAAIIQTSSRARTWATVSFEALHEQHQAERSRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G + E K Y++++ D ALS L ++ + E+ +V ++ M
Sbjct: 466 KALDYFQEKGWVELESKQMTEVYSVLQSGFDSTALSEELHRYFTRHEHTEVARIHAMLD- 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + +YF GD N P + G S
Sbjct: 525 -LFATD--------------RCLGYRLAEYF-GDHNA--PQQCGHCS 553
>gi|398862442|ref|ZP_10618047.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM79]
gi|398230503|gb|EJN16526.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM79]
Length = 644
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 186/590 (31%), Positives = 290/590 (49%), Gaps = 54/590 (9%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
LM DQL RH I G + S+Q ++ ++ + + G +K+L +S ER N F
Sbjct: 65 LMQDQLAFLQRH---GIAAGSIDSAQSRDDASDVMARAKSGELKILMISVERLKNERFRH 121
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT +
Sbjct: 122 -FLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIA 178
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ + I +++ R NL L V + G +++ ++ + + S Y LQ
Sbjct: 179 DMQAKFAIAPEDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSQRPG--QPSIVYVTLQ 236
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ +H I+ +L + I ++YH+G+P + R IQ F + +VAT+AFGMG+D
Sbjct: 237 KTAEH-----IAEHLTRSGIQAEAYHAGLPHEQREAIQRRFMGGQSNCIVATIAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D +
Sbjct: 292 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPERDG 351
Query: 548 INKFLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPE 605
I L ++ + L L +S R+ +K TLL LEL + + P
Sbjct: 352 IRCVLDELQATAPEGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRAM----IAPR 402
Query: 606 LKVTCTLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTI 659
F + LLA ++ V+ I++ S + + + A
Sbjct: 403 YAYYAEYRFKYLQEPEALLARFEGERKDFVSAIIQTSSRARTWATVNFDALYEQYSAERS 462
Query: 660 DVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRM 719
V L + +G + E K Y++++ D LSA L + ++ E ++ ++ M
Sbjct: 463 RVVKALDYFQEKGWVEVESKQMTEVYSLLQADFDSQTLSAELHAYFTQHERTEIARIHAM 522
Query: 720 FHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + +YF GD+N P + G S
Sbjct: 523 LD--LFATD--------------HCLGYRLAEYF-GDENA--PKQCGHCS 553
>gi|398921139|ref|ZP_10659675.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM49]
gi|398166658|gb|EJM54751.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM49]
Length = 644
Score = 261 bits (668), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 187/587 (31%), Positives = 288/587 (49%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQETAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ ++ + + G +K+L +S ER N F F
Sbjct: 65 LMQDQLSFLQRHGISAGSIDSAQSRDDASDVMVRAKSGELKILMISVERLKNERFRH-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQVLLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ + S Y LQ +
Sbjct: 182 AKFAIATEDVVTTGFYRPNLNLLVEPVRGADKRRRLVEWMS--LRPEQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P + R IQ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLNRNGIQAEAYHAGLPHEQREAIQRRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELDGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L ++ + L L +S R+ +K TLL LEL + + P
Sbjct: 355 VLDEMLAAAPEGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRGL----IAPRYAY 405
Query: 609 TCTLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + LLA ++ VA I++ S + + + A V
Sbjct: 406 YAEYRFKYVQEPEALLARFEGERRDFVAAIIQTSSRARTWATVNFEALYEQHRAERSRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G + E K Y++++ D ALS L + + E+ ++ ++ M
Sbjct: 466 KALDYFQEKGWVELESKQMTEVYSVLQSGFDSAALSEELHGYFTRHEHTEIARIHAMLD- 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + +YF GD N P + G S
Sbjct: 525 -LFATDR--------------CLGYRLAEYF-GDHNA--PQQCGHCS 553
>gi|237802158|ref|ZP_04590619.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331025015|gb|EGI05071.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 644
Score = 261 bits (668), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 179/544 (32%), Positives = 270/544 (49%), Gaps = 23/544 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q ++VA+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDDVADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQTLLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I +++ R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPDDVVTTGFYRANLHLWVKPVSGRDKRRRLVEWLNERQG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAAHLEQNGLPASAYHAGLPNDQRESIQKRFMDGSLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREGIAR 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPEL 606
L + + + L L S R+ +K TLL LEL I E
Sbjct: 355 VLEDLLNARQDGQWEFLLGPLADLSNIRQLPLK-----TLLVQLELRGIIAPRYAYFAEY 409
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ L + ++ + V ++ S + + + GA V L
Sbjct: 410 RFKFLLQPNDLMARFEGERQQFVQALIDTSSRARTWATVNFDAMYQQYGAERARVVKALD 469
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
+ +G I E K Y+++ D ALS L + E +V ++ M VF+
Sbjct: 470 YFQEKGWIELESKQMTEVYSLLRSDFDPQALSTELHDYFVHHEATEVARIHAMLD--VFS 527
Query: 727 VDVC 730
D C
Sbjct: 528 SDQC 531
>gi|388469934|ref|ZP_10144143.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas synxantha
BG33R]
gi|388006631|gb|EIK67897.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas synxantha
BG33R]
Length = 645
Score = 261 bits (668), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 189/585 (32%), Positives = 295/585 (50%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ E + VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LQQVFGYPQFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q +E + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLGFLQRHGISAGSIDSAQSRDEANDVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 HSVQISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V +SG +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAPGDVVTTGFYRPNLNLLVEPVSGQDKRRRLVEWMRE--RPDQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L + I ++YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLNRHGIQAEAYHAGLPHDKREGIQQRFMGGRSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQEGIGR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ T S G+ L++ S S +I+E + TLL LEL + + P
Sbjct: 355 VLEELQT--ARSEGQWEFLLR-SLSDHSNIRELPLKTLLVQLELKGV----IAPRYAFYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + VA I++ + + D + A V
Sbjct: 408 EYRFKYLVEPDALLARFSGERQQFVAAIIQVCKRAKTWATVDFDALYQQHNAERSRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G I E K Y++++ + LSA L + E +V ++ M
Sbjct: 468 LDYFQEQGLIELESKQMTEVYSLLDTDFEPQTLSAELYTGFKQHEVTEVARIHAM----- 522
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+D+ H CL + + YF GD+N P + G S
Sbjct: 523 --LDLFATEH---------CLGQRLAQYF-GDENA--PQRCGHCS 553
>gi|443728287|gb|ELU14701.1| hypothetical protein CAPTEDRAFT_176954 [Capitella teleta]
Length = 853
Score = 261 bits (668), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 212/718 (29%), Positives = 330/718 (45%), Gaps = 114/718 (15%)
Query: 196 VYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMILP----GLTLVVCP 249
V+G+ SFR GQ AI +L +ST+++L TGAGKSLCYQ+PA + +TLV+ P
Sbjct: 121 VFGFSSFRPGQETAIMRILCGACQSTLVMLSTGAGKSLCYQLPAYLYAKKRNSITLVISP 180
Query: 250 LVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
LV+LM DQ+ LPP + G L ++ + + + +L +SPE ++ +
Sbjct: 181 LVSLMEDQVAGLPPNVKGACLHTNMSKAQRERIVEGLANNQYHLLLLSPEALISGGYQLR 240
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
++ +DE HCVSEWSH+FRPSY+RL +L+ + V+C+L +TATAT T
Sbjct: 241 SDKIPPVAFACIDEVHCVSEWSHHFRPSYLRL-CKVLKEQYGVQCMLGLTATATMVTAAS 299
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
V L I SN ++ + ++ LS + +++ A V + R S I+
Sbjct: 300 VAQHLGI--SNYMEATIRGTPIPRNLCLSASKDEDKEEALV-ALLQGQRFSACDSIIVYC 356
Query: 430 GKHFETDLISRYL--C------------DNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
+ TD +S L C + + YH+G+ R RIQ F S ++R+
Sbjct: 357 TRRQLTDRVSTLLRTCLKEEKPNEKATKKKPMLAECYHAGLSPAQRKRIQNAFMSGRLRI 416
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLR 535
+VATVAFGMGLDK DV V+H++LP++ E YVQEIGRAGRDG+LS+CH+FLD LR
Sbjct: 417 IVATVAFGMGLDKPDVRGVVHFNLPKTFESYVQEIGRAGRDGKLSHCHVFLDSGDLNELR 476
Query: 536 SLMYSDGVDEYAINKFLCQVF-----TNGMNSHGKLCSLVKESAS--------------- 575
++++ VD A+ + F + +H K KE S
Sbjct: 477 RHVHANAVDHLAVKHLIKAFFPPCKCRHLHENHKKAVKSFKEQESVTERDTSSKSRICPG 536
Query: 576 -----------RKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLAD 624
K D+KEE + TLL LEL ++L+ L + C + + LLA
Sbjct: 537 HEVAVPIEKLVEKLDMKEEGICTLLCYLELHPSEWLKNLSNVYAQCHIQCYGGPHQLLAI 596
Query: 625 KDK--------MVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKM------ 670
K A + + + F++ VA+S+G + V +L L+
Sbjct: 597 AKKCPPVAVAIARARRRGVTMSHCNELDFNVIEVADSMGWESGPVKRELKMLQWEFGVSG 656
Query: 671 --RGEITYELKDPAYCYTIVEVPSDFC-----ALSAHLTKWLSEVENCKVRKLDRMFHAA 723
+ + E D + V P D + LT+ + E ++ +L + F
Sbjct: 657 PTKTGVMVEFSDLGF---HVRSPGDLSEDEVDEIVGFLTERMQTQERTELFQLQKFFD-T 712
Query: 724 VFAVD--VCEKTHGCNGSLHTPCLQKNILDYFRG-------------------------- 755
++ V C + + L++NI +YF
Sbjct: 713 LYKVSHKSCWSCAEKADEVRSAKLKENISEYFERPPDLAGGQVTMLSFATETNEGGISML 772
Query: 756 DDNCDVPNKIGQSSPFLRADIKVFLQ-SNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
D N N+ G +RADI+ F+ + T R++ARI HGI SP +P+ +W +
Sbjct: 773 DSNVTCDNEAG-----VRADIRAFVHLYSSEHNLTGRSIARIFHGIPSPNFPADVWGR 825
>gi|406877265|gb|EKD26547.1| hypothetical protein ACD_79C01130G0003 [uncultured bacterium]
Length = 644
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 182/567 (32%), Positives = 287/567 (50%), Gaps = 46/567 (8%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY+SF+ GQ E I+ ++ +S + PTGAGKS+CYQ+PA++LPGLTLVV PL++LM D
Sbjct: 10 FGYNSFKKGQKEVIQKIMQNESVAAIFPTGAGKSICYQLPALLLPGLTLVVSPLLSLMKD 69
Query: 257 QLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I L S+ E + I + G +K+L +S ERF N F +
Sbjct: 70 QIDFLSLHKIPAARLDSTLSKNEYNDIIEKAEKGTLKILMISVERFRNERFRYHLKKMN- 128
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
+SL+V+DEAHC+SEW HNFRP Y+++ A + N++ +L +TATAT D + +
Sbjct: 129 VSLLVIDEAHCISEWGHNFRPEYLKIPA--YQNEFNIKQVLLLTATATKKVSNDFCAKFK 186
Query: 376 IPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
I N+I R+NL L ++ L + N+ ++E S S+ Y LQ + +
Sbjct: 187 IRKENIIVTGFYRNNLFLQITPLEEVQKNNQLIKRINE--SPGVSTIIYVTLQKTAEE-- 242
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
++ +L N I V YH+G+ ++R IQ F + ++ VVAT+AFGMG+DK+D+ +
Sbjct: 243 ---VAGFLMKNKIKVAFYHAGMENEERELIQNRFMAGELDCVVATIAFGMGIDKKDIRRI 299
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAINKFL 552
IHY LP+SLE Y QEIGR+GRDG+ S+C + D+IT L + +Y D D +I L
Sbjct: 300 IHYDLPKSLENYSQEIGRSGRDGKASFCEVLANRDNITI--LENFIYGDTPDIQSIKIVL 357
Query: 553 CQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTL 612
Q+ N+ G + + S +I+ + TLL L++ I + P+
Sbjct: 358 EQI----RNNKGFVWEIKTGKLSVDTNIRILPLKTLLVYLDMEGI----IRPKYTYYEEY 409
Query: 613 NF-HKTTPTLLADKDK-----MVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+F +K TP + D K V IL S TK+ D+ + S + + L
Sbjct: 410 SFKYKITPQEIIDNFKNERKTFVKNILDNSLTKKTWTYVDMQEIVASYKSDRTRIIAALE 469
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
+ + I + I+ D +S + + E ++ ++ M
Sbjct: 470 YFEEKEWIELSSNLSIEVFDILNQAFDISEISNKMFELFKNKETNEIERIHNM------- 522
Query: 727 VDVCEKTHGCNGSLHTPCLQKNILDYF 753
V E + C+ KN+ +YF
Sbjct: 523 VSFFETSR---------CISKNLAEYF 540
>gi|398938992|ref|ZP_10668211.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp.
GM41(2012)]
gi|398164628|gb|EJM52758.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp.
GM41(2012)]
Length = 642
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 188/587 (32%), Positives = 289/587 (49%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLSALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ ++ + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLQRHGIAAGSIDSAQSRDDASDVMARAKSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIADME 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAPEDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSERPG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P + R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLGRNGIQAEAYHAGLPHEQREAIQKRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELDGIRH 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L ++ + L L +S R+ +K TLL LEL I + P
Sbjct: 355 VLDELQAAAPEGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRGI----IAPRYAY 405
Query: 609 TCTLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + LLA ++ VA I++ S + + + A V
Sbjct: 406 YAEYRFKYLQEPEALLARFEGERKDFVAAIIQTSNRARTWATVNFDALYEQHQAERNRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G + E K Y++++ D ALS L + + E ++ ++ M
Sbjct: 466 KALDYFQEKGWVELESKQMTEVYSLLQTDFDAQALSEELHAYFTRHEQTEIARIHAMLD- 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + +YF GD+N P + G S
Sbjct: 525 -LFATD--------------HCLGYRLAEYF-GDENA--PQQCGHCS 553
>gi|374705338|ref|ZP_09712208.1| ATP-dependent DNA helicase domain-containing protein [Pseudomonas
sp. S9]
Length = 643
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 178/558 (31%), Positives = 277/558 (49%), Gaps = 23/558 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GY FR GQ AI+ V+ +S + PTG+GKS+CYQ+PAM LP LTLVV PL+A
Sbjct: 6 LQRTFGYQQFRPGQEAAIEAVMAGRSVAAIFPTGSGKSMCYQLPAMHLPHLTLVVSPLLA 65
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q E++A+ + + G +KVL +S ER N F + F
Sbjct: 66 LMQDQLAFLQRHSIKAASIDSAQSREDIAQVMHDAKSGELKVLMISVERLKNERFRN-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L R + N+ +L +TATAT + D+
Sbjct: 125 QQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YRRQFNIAQVLLLTATATPPVIADMQ 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
EI ++++ R NL L V ++G ++Q V+ + + Y+ Q
Sbjct: 183 QKFEIAEADVVTTGFYRPNLNLWVEPVAGADKQRR---LVEWLSAKAGQPSIVYVTQQKT 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
DL L +YH+G+P + R IQ F ++ +VAT+AFGMG+DK D
Sbjct: 240 AEQVADL----LAAKGFPASAYHAGMPHERRESIQRQFMGGQLNCIVATIAFGMGIDKSD 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+HY LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 296 IRNVVHYDLPKSIENYSQEIGRAGRDGQPSDCWVMANRDSLNVLENFVYGDTPELEGIAY 355
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI---QYLQLLPELK 607
L ++ G + +L + S + +I+ + TLL LEL + +Y E +
Sbjct: 356 VLNELLACGADGQWELTF---NALSEQSNIRLLALKTLLVQLELRGVIAPKY-AYFAEYR 411
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
+ + ++ V ++ S+ + D + A V L
Sbjct: 412 FKYLIEPEQLIARFDGERRGFVEALVASSKRARTWCTVDFDQLYQLHQAERSRVIKALDY 471
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAV 727
+ + I E K YT+++ D L A L ++ + E+ ++ ++ M +FA
Sbjct: 472 FQEKAWIELESKQMTEVYTLLDAAFDPARLGAELHRYFKQQEHSEIERIHAMLD--LFAS 529
Query: 728 DVC--EKTHGCNGSLHTP 743
D C ++ G G P
Sbjct: 530 DQCLSQRLAGYFGDSQAP 547
>gi|422648576|ref|ZP_16711697.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330962111|gb|EGH62371.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 644
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 181/547 (33%), Positives = 271/547 (49%), Gaps = 29/547 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEHVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
L+ DQL RH I + S+Q E+VA+ + + G +K+L +S ER N F +
Sbjct: 65 LIQDQLAFLHRH---GISAASIDSAQSREDVADVMGRARSGELKILMISVERLKNERFRN 121
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT +
Sbjct: 122 -FIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQALLLTATATPQVII 178
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ I ++I R NL L V+ +SG +++ +++ + + Y LQ
Sbjct: 179 DMQDKFAIAPEDVITTGFYRANLHLWVTPVSGRDKRRRLVEWLNGKRG--QPTIVYVTLQ 236
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ ++ I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+D
Sbjct: 237 KTAEY-----IAAHLEQNGLPASAYHAGLPNDQRESIQKRFMGGSLNCIVATIAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D +
Sbjct: 292 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREG 351
Query: 548 INKFLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLL 603
I + L + + + L L S R+ +K TLL LEL I
Sbjct: 352 IARVLDDLLNARHDGQWEFLLGPLADLSNIRQLPLK-----TLLVQLELRGIIAPRYAYF 406
Query: 604 PELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSN 663
E + L ++ + V ++ S + D + GA V
Sbjct: 407 AEYRFKFLLQPADLMARFEGERQQFVQALINTSSRARTWATVDFDAMYQQYGAERGRVVK 466
Query: 664 QLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAA 723
L + +G I E K Y+++ D ALS L + + E +V ++ M
Sbjct: 467 ALDYFQEKGWIELESKQMTEVYSLLRSDFDPQALSTELHDYFAHHEATEVARIHAMLE-- 524
Query: 724 VFAVDVC 730
VF+ D C
Sbjct: 525 VFSSDQC 531
>gi|389686363|ref|ZP_10177684.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas chlororaphis
O6]
gi|388549824|gb|EIM13096.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas chlororaphis
O6]
Length = 644
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 187/585 (31%), Positives = 290/585 (49%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q ++ E + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLQRHGIAAASIDSAQSRDDANEVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVRISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAGQDVVTTGFYRPNLNLLVEPVRGQDKRRRLVQWMSERPG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L + I ++YH+G+P + R IQ F + + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLSRHGIQAQAYHAGLPHEQREAIQRQFMAGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELEGIRC 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ G G+ L+ A + +I++ + TLL LEL + + P
Sbjct: 355 VLDEL--QGAAPDGQWEFLLGPLADQS-NIRQLPLKTLLVQLELRGL----IAPRYAYFA 407
Query: 611 TLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + LLA ++ + VA I++ S + + + A V
Sbjct: 408 EYRFKFLEEPQVLLARFEGERREFVAAIIETSSRARTWATVNFDALYQQHQAERNRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G + E K Y ++E D LS L + + E+ ++ ++ M A+
Sbjct: 468 LDYFQEKGWVELESKQMTEVYNLLETGFDAAILSQQLHAYFKQHESSEIARIHAML--AL 525
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA + CL + YF GDD P + G S
Sbjct: 526 FATE--------------QCLGYRLAQYF-GDDQA--PQRCGHCS 553
>gi|398841335|ref|ZP_10598557.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM102]
gi|398108554|gb|EJL98508.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM102]
Length = 644
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 186/588 (31%), Positives = 292/588 (49%), Gaps = 50/588 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
LM DQL RH I G + S+Q ++ ++ + + G +K+L +S ER N F
Sbjct: 65 LMQDQLAFLQRH---GIAAGSIDSAQSRDDASDVMARAKSGELKILMISVERLKNERFRH 121
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT +
Sbjct: 122 -FLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIA 178
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ + I +++ R NL L V + G +++ ++ + + S Y LQ
Sbjct: 179 DMEAKFAIAPEDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSQRPG--QPSIVYVTLQ 236
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ +H I+ +L N I ++YH+G+P + R IQ+ F + +VAT+AFGMG+D
Sbjct: 237 KTAEH-----IAEHLGRNGIQAEAYHAGLPHEQREGIQKRFMGGQSNCIVATIAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D +
Sbjct: 292 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPERDG 351
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELK 607
I L ++ G+ L+ A + +I++ + TLL LEL I + P
Sbjct: 352 IRCVLEEL--QAAVPEGQWEFLLGPLADQS-NIRQLPLKTLLVQLELRAI----IAPRYA 404
Query: 608 VTCTLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDV 661
F + LLA ++ V+ I++ S + + + A V
Sbjct: 405 YYAEYRFKYLQEPEALLARFEGERKDFVSAIIQTSSRARTWATVNFDALYEQYSAERSRV 464
Query: 662 SNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFH 721
L + +G + E K Y++++ D LS L + ++ E ++ ++ M
Sbjct: 465 VKALDYFQEKGWVEVESKQMTEVYSLLQADFDSQTLSTELHAYFTQHERTEIARIHAMLD 524
Query: 722 AAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + +YF GD+N P + G S
Sbjct: 525 --LFATD--------------HCLGYRLAEYF-GDENA--PKQCGHCS 553
>gi|398975392|ref|ZP_10685540.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM25]
gi|398140616|gb|EJM29578.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM25]
Length = 642
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 188/583 (32%), Positives = 281/583 (48%), Gaps = 40/583 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQETAISAVLAGRSAAAIFPTGSGKSLCYQVPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q E+ + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLEFLRRHGISAGSIDSAQSREDANDVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQTLLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAAEDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSERAG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L N I ++YH+G P + R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLERNGIQAEAYHAGFPHEQRDGIQKRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQDGIRH 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQ-YLQLLPEL 606
L ++ + L L +S R +K TLL LEL G I E
Sbjct: 355 VLDELQAAAPEGQWEFLLGPLADQSNIRSLPLK-----TLLVQLELRGLIAPRYAYYAEY 409
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ L ++ V I++ S + + + A V L
Sbjct: 410 RFKYLLEPEALLERFEGERRDFVTAIIQTSSRARTWATVNFEAMYEQYSAERNRVVKALD 469
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
+ +G + E K Y ++ D ALSA L + + E +V ++ M +FA
Sbjct: 470 YFQEKGWVELESKQMTEVYNVLRGDFDSQALSAELHGYFTRHEQAEVARIHAMLE--LFA 527
Query: 727 VDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+ CL + +YF GD N P + G S
Sbjct: 528 TER--------------CLGYRLAEYF-GDHNA--PQQCGHCS 553
>gi|323497950|ref|ZP_08102959.1| DNA helicase [Vibrio sinaloensis DSM 21326]
gi|323316995|gb|EGA69997.1| DNA helicase [Vibrio sinaloensis DSM 21326]
Length = 644
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 156/412 (37%), Positives = 225/412 (54%), Gaps = 19/412 (4%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D N+ L +G+DS R GQ + ++ VL S + PTG+GKSLCYQ+PA+ LP LTL
Sbjct: 7 DTNIQATLEQTFGFDSLRPGQQQVVEKVLAGHSAAAIFPTGSGKSLCYQLPAVTLPHLTL 66
Query: 246 VVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
VV PL+ALM DQL L I + SSQ EE + ++ GA KVL +S ER N
Sbjct: 67 VVSPLLALMKDQLAFLNSKQIPAASIDSSQTREETLHVMEQVRQGATKVLMISVERLKNE 126
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
F F + ISL+VVDEAHC+SEW HNFRP Y++L L N+ L +TATAT
Sbjct: 127 RFRQ-FISQIPISLLVVDEAHCISEWGHNFRPDYLKLPQYL--REFNIPQALLLTATATE 183
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH--RSSKH 422
+ ++D+ I S+++ R NL +++S R ++ + + + S
Sbjct: 184 SVIKDMRDKFAIDDSDIVVTGFYRPNLDITISPC---RDEDKLPTLVSLLKQDPTQPSIV 240
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y LQ + +H +++ L + I+ +YH+G+ + R +IQ F + + +VAT+AF
Sbjct: 241 YVTLQNTAEH-----VAKALLEQGINSSAYHAGMDNQTREQIQSRFMAGNLDCIVATIAF 295
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
GMG+DK D+ V+HY LP+S+E Y QEIGRAGRDG +SYC L + L + +Y D
Sbjct: 296 GMGVDKSDIRRVVHYDLPKSIENYAQEIGRAGRDGHMSYCTLLANKNAISTLENFIYGDT 355
Query: 543 VDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
+ I + Q + L L ES R+ +K TLL +EL
Sbjct: 356 PESGEIEFIINQAIHSSPQWEVVLSRLASESNVRQLPLK-----TLLVYMEL 402
>gi|157375455|ref|YP_001474055.1| 23S rRNA Gm2251-methyltransferase [Shewanella sediminis HAW-EB3]
gi|157317829|gb|ABV36927.1| 23S rRNA (Gm2251)-methyltransferase [Shewanella sediminis HAW-EB3]
Length = 648
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 177/553 (32%), Positives = 281/553 (50%), Gaps = 35/553 (6%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+ FR GQ + I VL S + PTG+GKSLCYQ+PA+ LP LTLVV PL+
Sbjct: 8 LLQAHFGFSDFRSGQYDVINHVLQGHSAAAIFPTGSGKSLCYQLPAIALPNLTLVVSPLL 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
AL+ DQL L I+ + SSQ E+ + +R ++ G +K+L +S ER N F F
Sbjct: 68 ALIQDQLSFLQSKGINAASIDSSQSREQTLDVMRGVRQGEVKILMISVERLNNERFRQ-F 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ +S++VVDEAHC+SEW HNFRP Y++L R LN+ L +TATAT + D+
Sbjct: 127 ISEVPVSMLVVDEAHCISEWGHNFRPDYLKL--PRYRKELNIPQTLLLTATATPKVIEDM 184
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
S I + R NL L+V ++ ++ +E + ++ H+S Y LQ +
Sbjct: 185 GSKFGIAPEKVTLTGFYRPNLHLNVKGVASRDKVDELALWLSS--RVHQSGIIYVTLQQT 242
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ ++ L +I K+YH+G+ ++ R IQ F S K ++VAT+AFGMG+DK
Sbjct: 243 A-----EFVAEKLSQRNIPAKAYHAGMASEVRQAIQHDFMSGKQEIIVATIAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
D+ V HY LP+S+E Y QEIGRAGRDG S C + + L + +Y D + AI+
Sbjct: 298 DIRFVAHYDLPKSIENYAQEIGRAGRDGLNSDCLVLANADNLSTLENFVYGDTPEPGAIS 357
Query: 550 KFLCQVFTNGMNSHGKL-CSLVKESASRKFDIKEEVMLTLLTCLEL-----------GEI 597
L ++ S G+ +V S S + +I+ + TLL LEL E
Sbjct: 358 VVLDEILKAAELSSGQAQWEVVLNSLSNQSNIRPLSLKTLLVYLELLNIIKPTYSYFAEY 417
Query: 598 QYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGAT 657
++ L+PE ++ + F K ++ + I ++ + + + + +
Sbjct: 418 KFKYLMPEAQI---IEFFKE------ERRDFIRAIFTSADRAKIWSSVNFDKLNTAYASD 468
Query: 658 TIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLD 717
V + L +G I + K Y I++ D L L + + E +V++++
Sbjct: 469 RQRVLKAINYLDEKGMIELQSKQMTQVYQILDTRFDREQLQISLFERFNGKETSEVKRIN 528
Query: 718 RMFHAAVFAVDVC 730
++ +F D C
Sbjct: 529 QLI--GLFTSDQC 539
>gi|452825287|gb|EME32285.1| ATP-dependent DNA helicase RecQ [Galdieria sulphuraria]
Length = 632
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 193/577 (33%), Positives = 294/577 (50%), Gaps = 51/577 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
LR V+G+ F GQ E + + D S + +LPTG GKSLCYQIPA+I PGLTLVV PL+A
Sbjct: 26 LRDVFGFTEFLSGQEEVLLRLFDCGSALAILPTGGGKSLCYQIPAIIFPGLTLVVSPLIA 85
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM +Q + L V + G + S Q E+ + + G +K+LFVSPERF N FLS+
Sbjct: 86 LMREQAQKLVDVGVPAGHMDSLQSTTEIRGLRKSLAEGKVKILFVSPERFNNEVFLSLLR 145
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
T ISL VVDEAHC+SEW HNFRP Y+RL S L +TATAT D++
Sbjct: 146 -TLEISLFVVDEAHCISEWGHNFRPDYLRL--SQFARDCKAAYRLGLTATATERVANDIV 202
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI-LQISG 430
L I +++K R NL L++ NN +R + + R Y+ LQ +
Sbjct: 203 QRLNISPEAVVRKNFYRPNLVLNIRCC-NNEMEKREELLYCLRQRERGPTLIYVTLQRTA 261
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ +L ++ + YH+G+ + R + F +VVAT+AFGMG+DK D
Sbjct: 262 EE-----LAYFLVESGFQARPYHAGLSDEQRISTYDWFVQACNPIVVATIAFGMGVDKPD 316
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V H++L +SLE Y QEIGRAGRDG+ S C F L + +Y + D I+
Sbjct: 317 IRYVYHFNLSKSLEAYSQEIGRAGRDGKKSCCDTFFSGSDIPVLETFIYGNTPDATQISS 376
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
FL +F S ++ +L + FD++E V+ T+L L++ Y L+ E+
Sbjct: 377 FLTFLFEKRKKS--QVVNLPLYELATNFDMREVVLHTILVFLDV----YWGLIKEV---- 426
Query: 611 TLNFHKTTPTLLADKDKMVATILKKSETKQGQYVF-DIPTVA-NSIGATTIDVSN----- 663
T F + +L+++ L+ S T+Q ++ +I A + + +D++N
Sbjct: 427 TPMFAEYRYQVLSEEGGEEEETLENSLTEQQSILWKNINEQAKKKLKWSYLDLNNLQLGT 486
Query: 664 -----QLL--NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKL 716
QLL + +G I + + I+++P D L L + +SE E+ +V++L
Sbjct: 487 EIEQVQLLLDKIHSKGFIRLQAGKLQHRIQILKIPQDMKLLQQQLWQLISERESSEVQRL 546
Query: 717 DRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYF 753
+ M H A T C+ + + DYF
Sbjct: 547 EEMVHLAT----------------STKCVSQAVSDYF 567
>gi|398881929|ref|ZP_10636902.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM60]
gi|398199948|gb|EJM86879.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM60]
Length = 644
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 185/583 (31%), Positives = 285/583 (48%), Gaps = 40/583 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ + V+ +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAVVSAVMAGRSAAAIFPTGSGKSLCYQMSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLQRHGISAGSIDSAQSRDDAGDVMARAKSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIADME 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E ++ S Y LQ +
Sbjct: 182 AKFAIAPQDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSE--RPNQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P + R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLDRNGIQAEAYHAGLPHEQREAIQKRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELEGIRH 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPEL 606
L ++ H + L L +S R+ +K TLL LEL I E
Sbjct: 355 VLDELQAAVPEGHWEFLLGPLADQSNIRQLPLK-----TLLVQLELRGIIAPRYAYYAEY 409
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ L ++ VA I++ S + + + A V L
Sbjct: 410 RFKYLLEPEDLLARFEGERKDFVAAIIQTSSRARTWATVNFDALYEQHQAERNRVVKALD 469
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
+ +G + E K Y++++ D ALSA L + E ++ ++ M +FA
Sbjct: 470 YFQEKGWVELESKQMTEVYSLLQTAFDIQALSAELHDCFTRHERTEIARIHAMLD--LFA 527
Query: 727 VDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
D CL + +YF GD+N P + G S
Sbjct: 528 TD--------------HCLGNRLAEYF-GDENS--PQRCGHCS 553
>gi|397497313|ref|XP_003819457.1| PREDICTED: ATP-dependent DNA helicase Q4 [Pan paniscus]
Length = 841
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 210/732 (28%), Positives = 318/732 (43%), Gaps = 156/732 (21%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L +GAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 120 GHQAFRPGQERAVMRIL----------SGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSL 169
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQ+ LPP + + S ++ ++ I+ + VL ++PE + A L
Sbjct: 170 MDDQVSGLPPCLKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPEALVGAGGLPPAAQL 229
Query: 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSA 373
++ +DEAHC+S+WSHNFRP Y+R+ +LR R+ V C L +TATAT T DV
Sbjct: 230 PPVAFACIDEAHCLSQWSHNFRPCYLRV-CKVLRERMGVHCFLGLTATATRRTASDVAQH 288
Query: 374 LEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQN--------------------ERSAYVDE 412
L + +L A + NL LSVS+ + Q R +
Sbjct: 289 LAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLMLLQGKRFRNLDSIIIYCNRREDTER 348
Query: 413 VFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK 472
+ + R+ H + SG H + ++YH+G+ +++R R+Q F +
Sbjct: 349 IAALLRTCLHADWVPGSGGH-----------APKTTAEAYHAGMCSRERRRVQRAFMQGQ 397
Query: 473 IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DD 528
+RVVVAT+AFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL +D
Sbjct: 398 LRVVVATMAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLRPQGED 457
Query: 529 ITYFRLRSLMYSDGVDEYAINKFLCQVFT------------------------------- 557
+ LR +++D D A+ + + +VF
Sbjct: 458 LR--ELRRHVHADSTDFLAVKRLVQRVFPACTCTCTRPPSEQEGAVGGERPVPKYPPQEA 515
Query: 558 -----NGMNSHGKLC-----SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELK 607
++C +L + + D+ EE + TLL LEL +L+LL
Sbjct: 516 EQLGHQAAPGPRRVCMGHERALPIQLTVQALDMPEEAIETLLCYLELHPHHWLELLATTY 575
Query: 608 VTCTLNFHKTTPTL--LADKDKMVATILKK---SETKQG--QYVFDIPTVANSIGATTID 660
C LN L LA + +A L + + QG FD+ + +S+G
Sbjct: 576 THCRLNCPGGPAQLQALAHRCPPLAVCLAQRLPEDPGQGSSSVKFDMVKLVDSMGWELAS 635
Query: 661 VSNQLLNLKM---------RG--------EITYELKDPAYCYTIVEVPSDFCALSAHLTK 703
V L L+ RG E+ + L+ P E C +
Sbjct: 636 VRRALCQLQWDHEPRTGVRRGTGVLVEFSELAFHLRSPG--DLTAEEKDQICDFLYGRVQ 693
Query: 704 WLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQ----------KNILD-Y 752
++R+ + FH+ F C PCL+ K++L Y
Sbjct: 694 ARERQALARLRRTFQAFHSVAFP--------SCG-----PCLEQQDEERSTRLKDLLGRY 740
Query: 753 F----------RGDDNCDVPN--KIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGI 800
F D P ++ +R DI+ FL KF+ RAVARI HGI
Sbjct: 741 FEEEEGQEPGGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSSRAVARIFHGI 800
Query: 801 ASPAYPSTIWSK 812
SP YP+ ++ +
Sbjct: 801 GSPCYPAQVYGQ 812
>gi|398870136|ref|ZP_10625486.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM74]
gi|398209535|gb|EJM96208.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM74]
Length = 644
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 187/587 (31%), Positives = 287/587 (48%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ ++ + + G +K+L +S ER N F F
Sbjct: 65 LMQDQLAFLQRHGISAGSIDSAQSRDDASDVMARAKSGELKILMISVERLKNERFRH-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQVLLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ + + S Y LQ +
Sbjct: 182 AKFAIAADDVVTTGFYRPNLNLLVEPVRGADKRRRLVEWMSQ--RPDQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P + R IQ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLNRNGIQAEAYHAGLPHEQREAIQRRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELDGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L ++ + L L +S R+ +K TLL LEL + + P
Sbjct: 355 VLDEMLAAAPEGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRGL----IAPRYAY 405
Query: 609 TCTLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + P +L ++ VA I++ S + + + A V
Sbjct: 406 YAEYRFKYVQEPEVLLAHFEGERRDFVAAIIQTSSRARTWATVNFEALHEQHQAERSRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G + E K Y++++ D ALS L + E +V ++ M
Sbjct: 466 KALDYFQEKGWVELESKQMTEVYSVLQNGFDNVALSEELHGCFTRHERTEVARIHAMLD- 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + +YF GD D P + G S
Sbjct: 525 -LFATD--------------RCLGYRLAEYF-GDH--DAPQRCGHCS 553
>gi|398892141|ref|ZP_10645351.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM55]
gi|398186036|gb|EJM73422.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM55]
Length = 644
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 187/587 (31%), Positives = 289/587 (49%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ ++ + + G +K+L +S ER N F F
Sbjct: 65 LMQDQLAFLQRHGISAGSIDSAQSRDDASDVMARARSGELKILMISVERLKNERFRH-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ +L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQVLLLTATATPRVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G ++++ ++ + + S Y LQ +
Sbjct: 182 AKFAIAAEDVVTTGFYRPNLNLLVEPVRGADKRSRLVEWMSQ--RPDQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P + R IQ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLNRNGIQAEAYHAGLPHEQREAIQRRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QE+GRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEVGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELDGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L Q+ + L L +S R+ +K TLL LEL + + P
Sbjct: 355 VLDQMHAAAPEGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRGL----IAPRYAY 405
Query: 609 TCTLNFH--KTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + LLA ++ VA I++ S + + + A V
Sbjct: 406 YAEYRFKYVQEPEALLARFEGERRDFVAAIIQTSSRARTWATVNFEALYEQHQAERSRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G + E K Y++++ D ALS L + E+ ++ ++ M
Sbjct: 466 KALDYFQEKGWVELESKQMTEVYSVLQSGFDSVALSEELHGCFTRHEHTEIARIHAMLD- 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + +YF GD N P + G S
Sbjct: 525 -LFATD--------------HCLGYRLAEYF-GDHNA--PQQCGHCS 553
>gi|398877939|ref|ZP_10633074.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM67]
gi|398201343|gb|EJM88224.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM67]
Length = 644
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 185/583 (31%), Positives = 285/583 (48%), Gaps = 40/583 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ + V+ +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAVVSAVMAGRSAAAIFPTGSGKSLCYQMSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLQRHGISAGSIDSAQSRDDAGDVMARAKSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIADME 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E ++ S Y LQ +
Sbjct: 182 AKFAIAPEDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSE--RPNQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P + R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLDRNGIQAEAYHAGLPHEQREAIQKRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELEGIRH 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPEL 606
L ++ H + L L +S R+ +K TLL LEL I E
Sbjct: 355 VLDELQAAVPEGHWEFLLGPLADQSNIRQLPLK-----TLLVQLELRGIIAPRYAYYAEY 409
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ L ++ VA I++ S + + + A V L
Sbjct: 410 RFKYLLEPEDLLARFEGERKDFVAAIIQTSSRARTWATVNFDALYEQHQAERNRVVKALD 469
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
+ +G + E K Y++++ D ALSA L + E ++ ++ M +FA
Sbjct: 470 YFQEKGWVELESKQMTEVYSLLQTEFDIQALSAELHDCFTRHERTEIARIHAMLD--LFA 527
Query: 727 VDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
D CL + +YF GD+N P + G S
Sbjct: 528 TD--------------HCLGNRLAEYF-GDENS--PQRCGHCS 553
>gi|410628376|ref|ZP_11339098.1| ATP-dependent DNA helicase RecQ [Glaciecola mesophila KMM 241]
gi|410152069|dbj|GAC25867.1| ATP-dependent DNA helicase RecQ [Glaciecola mesophila KMM 241]
Length = 685
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 206/328 (62%), Gaps = 11/328 (3%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMI 255
++G+D FR GQ + + +L+ +S++ + PTG+GKSLCYQ A+ LP LTLVV PL+ALM
Sbjct: 22 IFGFDQFRGGQQQVVSQLLNGQSSLAIFPTGSGKSLCYQFCALHLPHLTLVVSPLLALMK 81
Query: 256 DQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS 314
DQL L I G + S+ P+E + ++ G IK+L VS ERF N F F +
Sbjct: 82 DQLAFLQSKGIAAGSIDSTLSPDEQRSNMERVRSGEIKILMVSVERFKNERFRQ-FIDSI 140
Query: 315 LISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374
+S++VVDEAHC+SEW HNFRP Y++L RA+LN+ +L +TATAT D+
Sbjct: 141 AVSMLVVDEAHCISEWGHNFRPDYLKLPD--YRAQLNIPLVLLLTATATKKVKLDMAKRF 198
Query: 375 EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
I +++Q R+NL L V + R+N+ + ++ + I+ ++ +H
Sbjct: 199 AIEPQHIVQTGFYRENLDLQVIATPERRKNQ------TLLQIIQAQQGCGIVYVTLQH-S 251
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
+ +++ L + +S K+YH+G+ + R ++Q+ F +I+VVVAT+AFGMG+DK D+ V
Sbjct: 252 AEQVAQRLAADGVSAKAYHAGLGDEIRQQVQQDFMEGRIQVVVATIAFGMGIDKSDIRFV 311
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+HY LP+S+E Y QEIGRAGRD +LS+C
Sbjct: 312 VHYDLPKSIENYSQEIGRAGRDDQLSHC 339
>gi|422660135|ref|ZP_16722552.1| ATP-dependent DNA helicase domain protein [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331018745|gb|EGH98801.1| ATP-dependent DNA helicase domain protein [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 642
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 178/545 (32%), Positives = 271/545 (49%), Gaps = 25/545 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+Q ++VA+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLHRHGISAASIDSAQSRDDVADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HN RP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNLRPDYLKLPD--YQREFNIPQALLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKH---YYILQ 427
I ++I R NL L V +SG +++ ++ E R + Y LQ
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVEPVSGRDKRQRLVEWLHE-----RQGQPPIVYVTLQ 236
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ ++ I+ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+D
Sbjct: 237 KTAEY-----IAAHLEQNGLPASAYHAGLPTDQRESIQKRFMGGSLNCIVATIAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D +
Sbjct: 292 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTPEREG 351
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPE 605
I + L + G G+ L+ +I++ + TLL LEL + E
Sbjct: 352 IARVLEDLL--GARHDGQWEFLLGPLGDLG-NIRQLPLKTLLVQLELRGLIASRYSYFAE 408
Query: 606 LKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQL 665
+ L H ++ + V ++ S + + + GA V L
Sbjct: 409 YRFKFMLQPHDLMARFEGERREFVQALIDTSSRARTWGTVNFDAMYQQYGAERGRVVKAL 468
Query: 666 LNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVF 725
+ +G I E K Y+++ D ALS L ++ + E +V ++ M VF
Sbjct: 469 DYFQEKGWIELESKQTTEVYSLLRSDFDLQALSTELYEYFAHHEATEVARIHAML--KVF 526
Query: 726 AVDVC 730
+ D C
Sbjct: 527 SSDQC 531
>gi|91223442|ref|ZP_01258707.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus
12G01]
gi|91191528|gb|EAS77792.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus
12G01]
Length = 641
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 197/639 (30%), Positives = 307/639 (48%), Gaps = 56/639 (8%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA ILP LTLV
Sbjct: 4 DSLHQTLQSVFGFDSLRQGQQPVIEAVMNGYSAAAIFPTGSGKSLCYQLPATILPNLTLV 63
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQL L I + SSQ EE + + ++ G IK+L +S ER N
Sbjct: 64 ISPLLALMKDQLSFLQSKGIAAASIDSSQSREEAQQVMAGVKNGQIKILMISVERLKNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F F ISL+V+DEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 124 FRE-FIRQVPISLMVIDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQSLLLTATATPA 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D+ +I ++ R NL +SV ++ E+ + E+ + S K I
Sbjct: 181 VIEDMQKKFDISSEHITVTGFYRSNLDISVIPCEETKKQEQ---LSEIIA--SSPKLPTI 235
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ ++ + + +++ L I+ +YH+G+ + R +IQ+ F +I +VAT+AFGMG
Sbjct: 236 VYVTQQQ-TAERVAKSLIHIGINAHAYHAGMKSDVREQIQQQFMDGQIDCIVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 295 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEF 354
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELG---EIQYLQL 602
+IN + Q H +V SR+ +I++ + TLL LEL E +Y
Sbjct: 355 TSINYVVEQA-----KEHAPQWEVVPLRLSRESNIRQLPLKTLLVYLELHNVIEAKY-SY 408
Query: 603 LPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
E + + ++ + V I S+ + D+ + + + V
Sbjct: 409 FAEYRFKFLHDQQFIVNQFQGERRQFVEAIFSCSQKAKVWCQVDLEALWMNYQSERSRVV 468
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L G I E K Y+++ L L + E+ + ++ M H
Sbjct: 469 AALDYFHQNGWIELESKQLTDVYSVMPTKQSSDVLIQQLYELFQSKESKDIERIHTMLH- 527
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD------NCDV------------PNK 764
+ + H CL + +YF D +C V P
Sbjct: 528 ------LFQSEH---------CLSSQLANYFADHDAPKQCGHCSVCRGHVATFTAPEPED 572
Query: 765 IGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASP 803
I QS + A + F+Q + +A + AVAR L GI++P
Sbjct: 573 IEQSQVSIWA--REFIQLSPSA-ISNDAVARFLCGISTP 608
>gi|408484438|ref|ZP_11190657.1| putative ATP-dependent DNA helicase [Pseudomonas sp. R81]
Length = 645
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 188/585 (32%), Positives = 293/585 (50%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+ FR GQ E + VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LQQVFGFPQFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q +E + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLGFLQRHGISAGSIDSAQSRDEANDVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QSVQISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V +SG +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAPGDVVTTGFYRPNLNLLVEPVSGADKRRRLVQWMSERAG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L N I ++YH+G+P R IQ+ F S + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLNRNGIQAEAYHAGLPHDKREGIQQRFMSGRSHCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQEGIRR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ + G+ L++ S S +I+E + TLL LEL + + P
Sbjct: 355 VLEEL--QAARADGQWEFLLR-SLSDHSNIRELPLKTLLVQLELKGV----IAPRYAFYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + VA I+ + + D + A V
Sbjct: 408 EYRFKYLVEPEALLARFSGERQQFVAAIIDVCKRAKIWATVDFDALYQQHNAERGRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G I E K Y++++ D LS L + E +V ++ M +
Sbjct: 468 LDYFQEQGLIELESKQMTEVYSLLDADFDADVLSKQLYTGFKQHEVGEVARIHAMLD--L 525
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA + CL + + YF GD+N P + G S
Sbjct: 526 FATE--------------RCLGQRLAQYF-GDENA--PQRCGHCS 553
>gi|257483671|ref|ZP_05637712.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 642
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 179/547 (32%), Positives = 270/547 (49%), Gaps = 29/547 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALLLPNLTLVVSPLLA 64
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
L+ DQL RH I + S+Q ++VA+ + + G +K+L +S ER N F +
Sbjct: 65 LIQDQLAFLHRH---GIAAASVDSAQSRDDVADVMARARSGELKILMISVERLKNERFRN 121
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT +
Sbjct: 122 -FIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQALLLTATATPQVIT 178
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ I ++I R NL L V + G +++ +++E + + Y LQ
Sbjct: 179 DMQDKFAIAPEDVITTGFYRANLHLWVKPVGGRDKRRLLVEWLNERRG--QPTIVYVTLQ 236
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ +H ++ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+D
Sbjct: 237 KTAEH-----VAVHLEQNGLPASAYHAGLPNDQRESIQKRFMGGSLNCIVATIAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D +
Sbjct: 292 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGGASDCLVLANRDSLNVLENFVYGDTPEREG 351
Query: 548 INKFLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLL 603
I + L + + + L L S R+ +K TLL LEL I
Sbjct: 352 IARVLEDLLDARHDGQWEFLLGPLADLSNIRQLPLK-----TLLVQLELRGIIAPRYAYF 406
Query: 604 PELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSN 663
E + L H ++ + V ++ S + + + GA V
Sbjct: 407 AEYRFKFLLQPHDLMARFEGERREFVQALIDTSSRARTWATVNFDAMYQQYGAERGRVVK 466
Query: 664 QLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAA 723
L + + I E K Y+++ D ALS L + + E +V ++ M
Sbjct: 467 ALDYFQEKAWIELESKQMTEVYSVLRSDFDPQALSVELHDYFAHHEATEVARIHAMLE-- 524
Query: 724 VFAVDVC 730
VF+ D C
Sbjct: 525 VFSSDQC 531
>gi|330806968|ref|YP_004351430.1| ATP-dependent helicase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375076|gb|AEA66426.1| Putative ATP-dependent helicase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 642
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 190/587 (32%), Positives = 287/587 (48%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAIGAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q +E + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLKRHGIAAASIDSAQGRDEANDAMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + N+ +L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQREFNIPQVLLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAAVDVVTTGFYRSNLNLLVEPVLGADKRARLVQWLGERAG--QPSIVYVTLQRT- 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
T+ I+ +L + I ++YH+G+P + R IQ F + +VAT+AFGMG+DK D
Sbjct: 239 ----TEQIAEHLGRHGIEAEAYHAGLPHEQREDIQRRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELAGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L ++ + + L L +S R+ +K TLL LEL + + P
Sbjct: 355 VLDELQAAAPDGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRRL----IAPRYAY 405
Query: 609 TCTLNFH-KTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F T P L ++ V+ I++ S + + + A V
Sbjct: 406 FAEYRFKFLTEPQQLLERFEGERRDFVSAIIQTSSRARAWATVNFDGMYQQYHAERNRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
N L + +G I E K Y+++E D LS+ L + + E ++ ++ M
Sbjct: 466 NALDYFQEKGWIELESKQMTEVYSVLEGGLDTQVLSSELHAYFTRHEQGEIARIHAMLE- 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + YF GDDN P + G S
Sbjct: 525 -LFATD--------------RCLGYRLAQYF-GDDNA--PRECGHCS 553
>gi|422682836|ref|ZP_16741100.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331012174|gb|EGH92230.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 642
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 179/547 (32%), Positives = 270/547 (49%), Gaps = 29/547 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALLLPNLTLVVSPLLA 64
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
L+ DQL RH I + S+Q ++VA+ + + G +K+L +S ER N F +
Sbjct: 65 LIQDQLAFLHRH---GIAAASVDSAQSRDDVADVMAPARSGELKILMISVERLKNERFRN 121
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT +
Sbjct: 122 -FIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQALLLTATATPQVIT 178
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ I ++I R NL L V + G +++ +++E + + Y LQ
Sbjct: 179 DMQDKFAIAPEDVITTGFYRANLHLWVKPVGGRDKRRLLVEWLNERRG--QPTIVYVTLQ 236
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ +H ++ +L N + +YH+G+P R IQ+ F + +VAT+AFGMG+D
Sbjct: 237 KTAEH-----VAVHLEQNGLPASAYHAGLPNDQRESIQKRFMGGSLNCIVATIAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D +
Sbjct: 292 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGGASDCLVLANRDSLNVLENFVYGDTPEREG 351
Query: 548 INKFLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLL 603
I + L + + + L L S R+ +K TLL LEL I
Sbjct: 352 IARVLEDLLDARHDGQWEFLLGPLADLSNIRQLPLK-----TLLVQLELRGIIAPRYAYF 406
Query: 604 PELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSN 663
E + L H ++ + V ++ S + + + GA V
Sbjct: 407 AEYRFKFLLQPHDLMARFEGERREFVQALIDTSSRARTWATVNFDAMYQQYGAERGRVVK 466
Query: 664 QLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAA 723
L + + I E K Y+++ D ALS L + + E +V ++ M
Sbjct: 467 ALDYFQEKAWIELESKQMTEVYSVLRSDFDPQALSVELHDYFAHHEATEVARIHAMLE-- 524
Query: 724 VFAVDVC 730
VF+ D C
Sbjct: 525 VFSSDQC 531
>gi|423098089|ref|ZP_17085885.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas fluorescens
Q2-87]
gi|397888801|gb|EJL05284.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas fluorescens
Q2-87]
Length = 642
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 188/590 (31%), Positives = 290/590 (49%), Gaps = 54/590 (9%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYSQFRPGQEAAIGAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
LM DQL RH P + S+Q ++ ++ + + G +K+L VS ER N F +
Sbjct: 65 LMQDQLAFLQRHGIP---SASIDSAQSRDDASDAMARARSGELKILMVSVERLKNERFRN 121
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F ISL+VVDEAHC+SEW HNFRP Y++L + + ++ +L +TATAT +
Sbjct: 122 -FLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFDIPQVLLLTATATPPVIA 178
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ + I ++++ R NL L V +SG +++ ++ E + S Y LQ
Sbjct: 179 DMQAKFAIAAADVVTTGFYRPNLNLLVEPVSGADKRGRLVQWLGERPG--QPSIVYVTLQ 236
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + I+ +L + I ++YH+G+P + R IQ F + +VAT+AFGMG+D
Sbjct: 237 RTAEQ-----IAEHLDRHGIGAEAYHAGLPHEQREAIQRRFMEGQSNCIVATIAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D +
Sbjct: 292 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGHPSNCLVLANRDSLNVLENFVYGDTPELDG 351
Query: 548 INKFLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPE 605
I L ++ ++ + L L +S R+ +K TLL LEL + + P
Sbjct: 352 IGCVLDELKAAALDGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRRL----IAPR 402
Query: 606 LKVTCTLNFH-KTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTI 659
F + P +L ++ V+ I++ S + + + A
Sbjct: 403 YAYFAEYRFKFLSEPQVLLEHFEGERRDFVSAIIQTSSRARTWATVNFDGIYQQYHAERH 462
Query: 660 DVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRM 719
V L + +G I E K Y+++E D LS L + + E ++ ++ M
Sbjct: 463 RVVKALDYFQEKGWIELESKQMTEVYSVLETAFDPQPLSHELHAYFTRHERGEIARIHAM 522
Query: 720 FHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + YF GDDN P + G S
Sbjct: 523 LE--LFATDR--------------CLGYRLAQYF-GDDNA--PRQCGHCS 553
>gi|269966225|ref|ZP_06180314.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 40B]
gi|269829140|gb|EEZ83385.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 40B]
Length = 641
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 196/639 (30%), Positives = 308/639 (48%), Gaps = 56/639 (8%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA ILP LTLV
Sbjct: 4 DSLHQTLQSVFGFDSLRQGQQPVIEAVMNGYSAAAIFPTGSGKSLCYQLPATILPNLTLV 63
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQL L I + SSQ EE + + ++ G IK+L +S ER N
Sbjct: 64 ISPLLALMKDQLSFLQSKGIAAASIDSSQSREEAQQVMAGVKNGQIKILMISVERLKNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F F ISL+V+DE+HC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 124 FRE-FIRQVPISLMVIDESHCISEWGHNFRPDYLKLPQ--YQRELNIPQSLLLTATATPA 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D+ +I ++ R NL +SV ++ E+ + E+ + S K I
Sbjct: 181 VIEDMQKKFDISSEHITVTGFYRSNLDISVIPCEETKKQEQ---LSEIIA--SSPKLPTI 235
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ ++ + + +++ L I+ +YH+G+ + R +IQ+ F +I +VAT+AFGMG
Sbjct: 236 VYVTQQQ-TAERVAKSLIHIGINAHAYHAGMKSDVREQIQQQFMDGQIDCIVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 295 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEF 354
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELG---EIQYLQL 602
+IN + Q H +V SR+ +I++ + TLL LEL E +Y
Sbjct: 355 TSINYVVEQA-----KEHAPQWEVVPLRLSRESNIRQLPLKTLLVYLELHNVIEAKY-SY 408
Query: 603 LPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
E + + ++ + V I S+ + D+ + + + V
Sbjct: 409 FAEYRFKFLHDQQFIVNQFQGERRQFVEAIFSCSQKAKVWCQVDLEALWMNYQSERSRVV 468
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L G I E K Y+++ + L L + E+ + ++ M H
Sbjct: 469 AALDYFHQNGWIELESKQLTDVYSVMPIKQSSDVLIQQLYELFQSKESKDIERIHTMLH- 527
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD------NCDV------------PNK 764
+ + H CL + +YF D +C V P
Sbjct: 528 ------LFQSEH---------CLSSQLANYFADHDAPKQCGHCSVCRGHVATFTAPEPED 572
Query: 765 IGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASP 803
I QS + A + F+Q + +A + AVAR L GI++P
Sbjct: 573 IEQSQVSIWA--QEFIQLSPSA-ISNDAVARFLCGISTP 608
>gi|89072358|ref|ZP_01158937.1| putative putative ATP-dependent DNA helicase RecQ [Photobacterium
sp. SKA34]
gi|89051890|gb|EAR57342.1| putative putative ATP-dependent DNA helicase RecQ [Photobacterium
sp. SKA34]
Length = 638
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 179/542 (33%), Positives = 273/542 (50%), Gaps = 21/542 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+DS R GQ E I VLD S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 6 LKKFFGFDSLRTGQEEVITRVLDGHSAAAIFPTGSGKSLCYQLPAIELPHLTLVISPLLA 65
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SSQ ++ + ++ I+ G IKVL +S ER N F F
Sbjct: 66 LMKDQLDFLASKGIPAASIDSSQTWQQTQQVMQSIRQGEIKVLMISVERLKNERFRH-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + LN+ +L +TATAT T + D+
Sbjct: 125 SQVPISLLVVDEAHCISEWGHNFRPDYLKL--PYYQQSLNIPQVLLLTATATPTVINDMQ 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
I +++ R NL LS+ L+ + + + + S Y LQ + +
Sbjct: 183 DKFNIAKDDIVVTGFYRKNLDLSI-LAAQDDEKLDVLQQQLIAQPNTPSIVYVTLQHTAE 241
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
I+ L N I ++YH+G+ A R IQ+ F + +I +VAT+AFGMG+DK D+
Sbjct: 242 E-----IAATLTSNHIPAQAYHAGMDADRRQHIQQQFMAGEINCIVATIAFGMGIDKSDI 296
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG S C + + L++ +Y D D +I
Sbjct: 297 RQVIHFDLPKSIENYSQEIGRAGRDGENSTCTVIANKSGLNVLQNFIYGDTPDRSSIATV 356
Query: 552 LCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI---QYLQLLPELKV 608
L N + + + ++ S+ +I+ + TLL LE+ +I QY + +
Sbjct: 357 L-----NEIKAQSQQWEVMNNRLSKDANIRLLPLKTLLVYLEIRQIIEPQY-TYFADYRY 410
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
++ + +++ + V I S + D+ + A V +
Sbjct: 411 KLNISQQEILTHFNSERRQFVEAIFACSTKARVWNTLDMDALWQGYNADRKRVVAAIDYF 470
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+G IT E K Y I D S L + + E+ ++++++ M A F
Sbjct: 471 NEKGWITLESKQMTDVYAIKNHHFDIDVESEALYQLFQQKEHSEIKRINSMI--AFFESK 528
Query: 729 VC 730
C
Sbjct: 529 TC 530
>gi|301061198|ref|ZP_07201987.1| ATP-dependent DNA helicase, RecQ family [delta proteobacterium
NaphS2]
gi|300444740|gb|EFK08716.1| ATP-dependent DNA helicase, RecQ family [delta proteobacterium
NaphS2]
Length = 638
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 179/537 (33%), Positives = 265/537 (49%), Gaps = 28/537 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
++ +G+D F DGQ + I ++ +S + PTGAGKSLCYQ+PAM LPG+TLVV PL+
Sbjct: 5 FIKRYFGFDRFLDGQKDVIDRIIAGESAAAIFPTGAGKSLCYQLPAMHLPGMTLVVSPLL 64
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQL L I L S+ EE T+R IK+L VS ERF N F +
Sbjct: 65 SLMKDQLAFLTSKRIPAAKLDSTISREEYQATLRDGVQNKIKILMVSVERFKNERFRNHL 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL+VVDEAHC+SEW HNFRP Y+++ L R N+ +L +TATAT +D+
Sbjct: 125 RRMK-ISLLVVDEAHCISEWGHNFRPDYLKI--PLYRKEFNIPQVLLLTATATPKVAKDM 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS--SKHYYILQI 428
IP N+I R+NL +SV+ N++N + +V + S Y LQ
Sbjct: 182 CGKFRIPRGNVITTGFFRENLHISVASVAENQKN---VALMKVLKEEPAGPSIVYVTLQK 238
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + +++YL + YH+G+ R IQ F + ++ VVAT+AFGMG+DK
Sbjct: 239 TA-----EAVAQYLSSAGFDARPYHAGMKTPLREEIQNHFMNGRLNTVVATIAFGMGIDK 293
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
++ VIHY LP+S+E Y QEIGRAGRDG + C L + L + +Y D + I
Sbjct: 294 GNIRKVIHYDLPKSIENYSQEIGRAGRDGLAAACTLLGNRGNIPVLENFVYGDTPETSGI 353
Query: 549 NKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L + N G + + S DI+ + TLL LE+ I L P+
Sbjct: 354 RYVLETIAKN----DGNMFEVRLNRLSMDADIRLLPLKTLLVYLEMDGI----LKPQYTY 405
Query: 609 TCTLNFH--KTTPTLL----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
T F KT +L ++ + V TI + ++ + +I + + G+ V
Sbjct: 406 FETYQFKMLKTENKILDFFSGERRRFVGTIFRHTKKARVWCHPEISEIVEASGSNRRRVL 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRM 719
+ L +G I K + I+ D S L+ E + ++ +M
Sbjct: 466 SALEYFDEKGWIELNAKSSVEVFEILNPGFDVEKASRRLSDLFRNKETMDIGRIQKM 522
>gi|332264341|ref|XP_003281198.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q4
[Nomascus leucogenys]
Length = 1178
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 220/719 (30%), Positives = 317/719 (44%), Gaps = 147/719 (20%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLV 251
+ G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL+
Sbjct: 476 LLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYTQRSPCLTLVVSPLL 535
Query: 252 ALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
+LM DQ+ LPP IH G ++ QR E V + +R QV VL ++PE + +
Sbjct: 536 SLMDDQVSGLPPCLKAACIHSG-MTRKQR-ESVLQKVRAAQV---HVLMLTPEALVGSGG 590
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
L T ++ +DEAHC+S+WSHNFRP Y+R+ +LR R+ V C L +TATAT T
Sbjct: 591 LPPATRLPPVAFACIDEAHCLSQWSHNFRPCYLRV-CKVLRERMGVHCFLGLTATATRRT 649
Query: 367 LRDVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
DV L + L A + NL LSVS+ R + +
Sbjct: 650 ASDVAQHLAVAEEPGLHGPAPVPANLHLSVSMD-------------------RDTDQALL 690
Query: 426 LQISGKHFET-DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ G+ F D I Y C+ + ++R R+Q F ++RVV ATVAFGM
Sbjct: 691 TLLQGERFRNLDSIIIY-CNRREDTERIAX----RERRRVQRXFMQAQLRVVXATVAFGM 745
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDG 542
GLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLF L LR +++D
Sbjct: 746 GLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFFALQGEDLRELRRHVHADS 805
Query: 543 VDEYAINKFLCQVFT--------------NGMNSHGKLCSLVKESAS------------- 575
D A+ + + +VF M + + A
Sbjct: 806 TDFLAVKRLVQRVFPACTCTCTRLPPEQEGAMGGERPVPKYPPQEAEQLGGHQAAPGPRR 865
Query: 576 ---------------RKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPT 620
+ D+ EE + TLL LEL +L+LL C LN
Sbjct: 866 ACMGHERVLPIQLTVQALDMPEEAIETLLCYLELHPRHWLELLATTYTHCRLNCPGGPAQ 925
Query: 621 L--LADKDKMVATILKK---SETKQG--QYVFDIPTVANSIGATTIDVSNQLLNLKM--- 670
L LA + +A L + + QG FD+ + +S+G V L L+
Sbjct: 926 LQALAHRCPPLAVCLAQRLPEDPGQGSSSVEFDMVRLVDSMGWELASVRQALCQLRWDHK 985
Query: 671 ------RG--------EITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKL 716
RG E+ + L+ P E C + ++R+
Sbjct: 986 PRTGVRRGTGVLVEFSELAFHLRSPG--DLTAEEKDQICDFLYGRVQARERQALARLRRT 1043
Query: 717 DRMFHAAVFAVDVCEKTHGCNGSLHTPCLQ----------KNILDYFRGDDNCDVPNKI- 765
+ FH+ F C PCL+ K++L + ++ P +
Sbjct: 1044 FQAFHSVAFP--------SCG-----PCLEQRDEERSTRLKDLLGRYFEEEEAQGPGGME 1090
Query: 766 -------GQS-----SPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
GQ+ +R DI+ FL KF+ RAVARI HGI SP YP+ ++ +
Sbjct: 1091 DTQAPEPGQARLQDWEDQVRGDIRQFLSLRPEEKFSGRAVARIFHGIGSPCYPAQVYGQ 1149
>gi|77456503|ref|YP_346008.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens Pf0-1]
gi|77380506|gb|ABA72019.1| ATP-dependent DNA helicase, RecQ-like [Pseudomonas fluorescens
Pf0-1]
Length = 642
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 189/587 (32%), Positives = 286/587 (48%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQVPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q E+ + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLEFLRRHGISAGSIDSTQSREDANDVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIRQTLLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ + S Y LQ +
Sbjct: 182 AKFSIAEDDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSARAG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L N I ++YH+G+P + R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLERNGIQAEAYHAGLPHEQRDAIQKRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQDGIRH 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L ++ + L L +S R +K TLL LEL + + P
Sbjct: 355 VLDELQAAAPEGQWEFLLGPLADQSNIRALPLK-----TLLVQLELRGL----IAPRYAY 405
Query: 609 TCTLNF-HKTTP-TLL----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + P TLL ++ VA I++ S + + + A V
Sbjct: 406 YAEYRFKYLLEPDTLLERFEGERRDFVAAIIQTSSRARTWATVNFEAMYEQYSAERNRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G + E K Y ++ D LSA L ++ + E +V ++ M
Sbjct: 466 KALDYFQEKGWVELESKQMTEVYNVLRGDFDSQVLSAELHEYFTRHEQTEVARIHAMLE- 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA + CL + +YF GD N P + G S
Sbjct: 525 -LFATE--------------RCLGYRLAEYF-GDHNA--PQQCGHCS 553
>gi|90577299|ref|ZP_01233110.1| putative putative ATP-dependent DNA helicase RecQ [Photobacterium
angustum S14]
gi|90440385|gb|EAS65565.1| putative putative ATP-dependent DNA helicase RecQ [Photobacterium
angustum S14]
Length = 638
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 176/531 (33%), Positives = 270/531 (50%), Gaps = 19/531 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+DS R GQ E I VLD S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 6 LKKYFGFDSLRTGQEEVITRVLDGHSAAAIFPTGSGKSLCYQLPAIELPHLTLVISPLLA 65
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SSQ ++ + ++ I+ G IKVL +S ER N F F
Sbjct: 66 LMKDQLDFLASKGIPAASIDSSQTWQQTQQVMQNIRQGEIKVLMISVERLKNERFRH-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + LN+ +L +TATAT + D+
Sbjct: 125 SQVPISLLVVDEAHCISEWGHNFRPDYLKL--PYYQQSLNIPQVLLLTATATPAVINDMQ 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
I +++ R NL LS+ L+ + + + + S Y LQ + +
Sbjct: 183 DKFNIAKDDIVVTGFYRKNLDLSI-LAAQDDEKLDVLQQQLIAQPNTPSIVYVTLQHTAE 241
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
I+ L +N I ++YH+G+ A R IQ+ F + +I +VAT+AFGMG+DK D+
Sbjct: 242 E-----IAATLTNNHIPAQAYHAGMDADRRQHIQQQFMAGEINCIVATIAFGMGIDKSDI 296
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG S C + + L++ +Y D D +I
Sbjct: 297 RQVIHFDLPKSIENYSQEIGRAGRDGENSTCTVIANKSGLNVLQNFIYGDTPDRSSIATV 356
Query: 552 LCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI---QYLQLLPELKV 608
L N + + + ++ S+ +I+ + TLL LE+ +I QY + +
Sbjct: 357 L-----NEIKTQSQQWEVMNNRLSKDANIRLLPLKTLLVYLEIRQIIEPQY-TYFADYRY 410
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
++ H+ ++ + V I S + D+ + A V +
Sbjct: 411 KLNISQHEILSHFNNERRQFVEAIFACSTKARVWNTLDMDALWQGYNADRKRVVAAIDYF 470
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRM 719
+G IT E K Y I D S L + + E+ ++++++ M
Sbjct: 471 NEKGWITLESKQMTDVYAIKNHHFDIDVESEALYQLFQQKEHSEIKRINSM 521
>gi|312958380|ref|ZP_07772901.1| ATP-dependent DNA helicase [Pseudomonas fluorescens WH6]
gi|311287444|gb|EFQ66004.1| ATP-dependent DNA helicase [Pseudomonas fluorescens WH6]
Length = 645
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 189/585 (32%), Positives = 288/585 (49%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ E + VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LQQVFGYPQFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q E + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLGFLQRHGISAGSIDSAQSREAANDVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + + L +TATAT + D+
Sbjct: 124 QSVRISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFKIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V +SG +++ ++ E ++ S Y LQ +
Sbjct: 182 AKFAIAPDDVVTTGFYRPNLNLLVEPVSGADKRRRLVQWMSE--RANQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L N I ++YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLNRNGIQAEAYHAGLPHDKREGIQQRFMGGRSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFIYGDTPEQEGIRH 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L + S G+ V S S +I+E + TLL LEL + + P
Sbjct: 355 VLEDL--QAARSEGQ-WEFVLRSLSDHSNIRELPLKTLLVQLELKGV----IAPRYAFYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + VA I++ + + D + A V
Sbjct: 408 EYRFKYLIEPEALLARFSGERQQFVAAIIQVCKRAKTWATVDFDALYQQHNAERGRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G I E K Y+++ D LSA L + E +V ++ M +
Sbjct: 468 LDYFQEQGLIELESKQMTEVYSLLNTDFDPLVLSAELYTGFKQHEVTEVARIHAMLD--L 525
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA + CL + + YF GD+N P + G S
Sbjct: 526 FATE--------------QCLGQRLARYF-GDENA--PQRCGHCS 553
>gi|156975530|ref|YP_001446437.1| ATP-dependent DNA helicase RecQ [Vibrio harveyi ATCC BAA-1116]
gi|156527124|gb|ABU72210.1| hypothetical protein VIBHAR_03262 [Vibrio harveyi ATCC BAA-1116]
Length = 641
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 199/640 (31%), Positives = 301/640 (47%), Gaps = 58/640 (9%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA LP LTLV
Sbjct: 4 DSLQQTLQSVFGFDSLRSGQQPVIEAVMNGHSAAAIFPTGSGKSLCYQLPATQLPHLTLV 63
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQL L I + SSQ EE + + ++ G IK+L +S ER N
Sbjct: 64 ISPLLALMKDQLSFLQSRGIAAASIDSSQSREETQQVMAGVKNGHIKILMISVERLKNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F L SL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 124 FREFIRQIPL-SLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQTLLLTATATPA 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D+ S +I N+ R NL +SV + +N+++ D + + + Y+
Sbjct: 181 VIEDMQSKFDIAGENITVTGFYRSNLDISVVPC--DEENKQTQLNDIIAAAPKLPSIVYV 238
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
Q + ++ L I+ +YH+G+ + R +IQ+ F +++I +VAT+AFGMG
Sbjct: 239 TQ----QQTAEQVASSLIRLGINAHAYHAGMKSDIREKIQQQFMTSQIDCIVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 295 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEP 354
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELG---EIQYLQL 602
+IN L Q+ N L ++S R+ +K TLL LEL E +Y
Sbjct: 355 SSINYVLEQIHENTPQWEVMALRLSRDSNIRQLPLK-----TLLVYLELAKVIEAKY-SY 408
Query: 603 LPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
E + + ++ + V I S + D+ + + + V
Sbjct: 409 FAEYRFKFLQDRSFILNQFQGERRQFVEAIFACSNKAKVWCQVDLEALWMNYQSERSRVV 468
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L G I E K Y+++ + +S HL + E + ++ M
Sbjct: 469 AALDYFHQNGWIELESKQLTDVYSVLPATQNQETISQHLVELFQSKEQKDIERIHTML-- 526
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDN-------CDVPNKIGQSSPF---- 771
N + CL + YF D N C V GQ + F
Sbjct: 527 --------------NLFQSSDCLSHQLAHYF-ADHNAPAQCGHCSVCR--GQVASFPQPQ 569
Query: 772 --------LRADIKVFLQSNLNAKFTPRAVARILHGIASP 803
L A + F+Q + A + AVAR L GI++P
Sbjct: 570 QEQPELAHLSAWVDEFIQLSPTA-ISNAAVARFLCGISTP 608
>gi|388602498|ref|ZP_10160894.1| ATP-dependent DNA helicase RecQ [Vibrio campbellii DS40M4]
Length = 641
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 201/640 (31%), Positives = 302/640 (47%), Gaps = 58/640 (9%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA LP LTLV
Sbjct: 4 DSLQQTLQSVFGFDSLRSGQQPVIEAVMNGHSAAAIFPTGSGKSLCYQLPATQLPHLTLV 63
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQL L I + SSQ EE + + ++ G IK+L +S ER N
Sbjct: 64 ISPLLALMKDQLSFLQSRGIAAASIDSSQSREETQQVMTGVKNGQIKILMISVERLKNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F L SL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 124 FREFIRQIPL-SLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQTLLLTATATPA 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D+ S +I N+ R NL +SV +N+++ D + + + Y+
Sbjct: 181 VIEDMQSKFDIAGENITVTGFYRSNLDISVVPC--EEENKQTHLNDIIAAAPKLPSIVYV 238
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
Q + ++ L I+ +YH+G+ + R +IQ+ F +++I +VAT+AFGMG
Sbjct: 239 TQ----QQTAEQVASSLIRLGINAHAYHAGMKSDIREKIQQQFMASQIDCIVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 295 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEP 354
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELG---EIQYLQL 602
+IN L Q+ N L ++S R+ +K TLL LEL E +Y
Sbjct: 355 SSINYVLEQIRENTPQWEVMALRLSRDSNIRQLPLK-----TLLVYLELAKVIEAKY-SY 408
Query: 603 LPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
E + + ++ + V I S + D+ + + + V
Sbjct: 409 FAEYRFKFLQDQSFILNQFQGERRQFVEAIFACSTKAKVWCQVDLEALWMNYQSERSRVV 468
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L G I E K Y+++ V + A S HL + E + ++ M
Sbjct: 469 AALDYFHQNGWIELESKQLTDVYSVLPVTQNQEATSQHLVELFQSKEQKDIERIHTML-- 526
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQ- 781
N + CL + YF D N P + G S R I F Q
Sbjct: 527 --------------NLFQSSDCLSCQLAHYF-ADHNA--PTQCGHCS-VCRGQIASFPQP 568
Query: 782 -------SNLNA------KFTPR-----AVARILHGIASP 803
++L+A + +P AVAR L GI++P
Sbjct: 569 QQEQPELTHLSAWVDEFVQLSPTAISNAAVARFLCGISTP 608
>gi|395496041|ref|ZP_10427620.1| putative ATP-dependent DNA helicase [Pseudomonas sp. PAMC 25886]
Length = 645
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 190/585 (32%), Positives = 291/585 (49%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ AI VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LQQVFGYPQFRLGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ + + + G +K+L VS ER N F + F
Sbjct: 65 LMQDQLGFLQRHGISAGSIDSAQSRDDANDVMARARSGELKILMVSVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + + L +TATAT + D+
Sbjct: 124 QSVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFRIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I ++I R NL L V ++G +++ A++ E ++ S Y LQ +
Sbjct: 182 AKFAIAPDDVITTGFYRANLNLLVEPVAGQDKRRRLVAWMKE--RANQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L N I ++YH+G+P R IQ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLNRNGIQAEAYHAGLPNDKREGIQRRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNILENFVYGDTPEQEGIRR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ + G+ L++ S S +I+E + TLL LEL + + P
Sbjct: 355 VLEEI--QAARAEGQWEFLLR-SLSDHSNIRELPLKTLLVQLELKGV----IAPRYAFYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + VA I++ + + D + A V
Sbjct: 408 EYRFKYLIEPEALLARFSGERQQFVAAIIQVCKRAKTWATVDFDALYQQHQAERNRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G I E K Y ++ D ALS L + E +V ++ M +
Sbjct: 468 LDYFQEQGLIEMESKQMTEVYGLLNTDFDPHALSTELYTGFKQHEVTEVARIHAMLD--L 525
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA + CL + YF GD+N P + G S
Sbjct: 526 FATE--------------ECLGYRLAHYF-GDENA--PRQCGHCS 553
>gi|395651862|ref|ZP_10439712.1| putative ATP-dependent DNA helicase [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 645
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 188/585 (32%), Positives = 291/585 (49%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ E + VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LQQVFGYPQFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q +E + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLGFLQRHGIAAGSIDSAQSRDEANAVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QSVQISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V +SG +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAPDDVVTTGFYRPNLNLLVEPVSGADKRRRLVQWMSERAG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L N I ++YH+G+P R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLNRNGIQAEAYHAGLPHDKREGIQQRFMDGRSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQDGIRR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ S G+ L++ S S +I+E + TLL LEL + + P
Sbjct: 355 VLDEL--QAARSEGQWEFLLR-SLSDHSNIRELPLKTLLVQLELKGV----IAPRYAFYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + VA I++ + + D + A V
Sbjct: 408 EYRFKYLIEPEALLARFSGERQQFVAAIIQVCKRAKTWATVDFEGLYQQHNAARNRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G I E K Y++++ D LS L + E +V ++ M
Sbjct: 468 LDYFQEQGLIELESKQMTEVYSLLDTEFDPQVLSQALYTGFKQHEVTEVARIHAM----- 522
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+D+ H CL + + YF GD+ P + G S
Sbjct: 523 --LDLFATEH---------CLGQRLAQYF-GDEKA--PQRCGHCS 553
>gi|451970838|ref|ZP_21924062.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus
E0666]
gi|451933255|gb|EMD80925.1| putative ATP-dependent DNA helicase RecQ [Vibrio alginolyticus
E0666]
Length = 641
Score = 258 bits (660), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 197/639 (30%), Positives = 307/639 (48%), Gaps = 56/639 (8%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA ILP LTLV
Sbjct: 4 DSLHQTLQSVFGFDSLRQGQQPVIEAVMNGYSAAAIFPTGSGKSLCYQLPATILPNLTLV 63
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQL L I + SSQ EE + + ++ G IK+L +S ER N
Sbjct: 64 ISPLLALMKDQLSFLQSKGIAAASIDSSQSREEAQKVMAGVKNGQIKILMISVERLKNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F F ISL+V+DEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 124 FRE-FIRQIPISLMVIDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQSLLLTATATPA 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D+ +I ++ R NL +SV ++ E+ + E+ + S K I
Sbjct: 181 VIEDMQKKFDIASEHITVTGFYRSNLDISVIPCEETKKQEQ---LSEIIA--SSPKLPTI 235
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ ++ + + +++ L I+ +YH+G+ + R +IQ+ F +I +VAT+AFGMG
Sbjct: 236 VYVTQQQ-TAERVAKSLIHIGINTHAYHAGMKSDVREQIQQQFMDGQIDCIVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 295 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEF 354
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELG---EIQYLQL 602
+IN + Q H +V SR+ +I++ + TLL LEL E +Y
Sbjct: 355 TSINYVVEQA-----KEHAPQWEVVPLRLSRESNIRQLPLKTLLVYLELHNVIEAKY-SY 408
Query: 603 LPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
E + + ++ + V I S+ + D+ + + + V
Sbjct: 409 FAEYRFKFLHDQQFIVNQFQGERRQFVEAIFSCSQKAKVWCQVDLEALWLNYQSERSRVV 468
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L G I E K Y+++ L L + E+ + ++ M H
Sbjct: 469 AALDYFHQNGWIELESKQLTDVYSVMPTKQSSDVLIQQLYELFQSKESKDIERIHTMLH- 527
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD------NCDV------------PNK 764
+ + H CL + +YF D +C V P
Sbjct: 528 ------LFQSEH---------CLSSQLANYFADHDAPKQCGHCSVCRGHVATFTAPEPED 572
Query: 765 IGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASP 803
I QS + A + F+Q + +A + AVAR L GI++P
Sbjct: 573 IEQSQVSIWA--QEFIQLSPSA-ISNDAVARFLCGISTP 608
>gi|163748921|ref|ZP_02156172.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
gi|161331297|gb|EDQ02185.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
Length = 654
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 197/650 (30%), Positives = 312/650 (48%), Gaps = 73/650 (11%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+LL+ +G+++FR GQL+ I+ +L +S + PTG+GKS+CYQ+PA+ LP LTLVV PL
Sbjct: 12 QLLQSYFGFEAFRPGQLDVIENILGGQSAAAIFPTGSGKSICYQLPAIALPHLTLVVSPL 71
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
+ALM DQL L I + S+Q E+ E +R I+ G IK+L +S ER N F
Sbjct: 72 LALMQDQLAFLKQKGISAASIDSTQSREQANEIMRGIRSGQIKILMISVERLNNERFRQF 131
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L SL+VVDEAHC+SEW HNFRP Y++L R LN+ L +TATAT + D
Sbjct: 132 ISEIPL-SLLVVDEAHCISEWGHNFRPDYLKL--PRYRQELNIPQTLLLTATATPKVIED 188
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+ I N+ R NL L+V + ++ + ++ S Y LQ
Sbjct: 189 MGDKFGIAKENVSLTGFYRANLHLAVQGVKTLDKLDTLCHWLQPRQGL--SGIIYVTLQK 246
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + ++ +L +I +YH+G+ + RS+IQ+ F S + +++VAT+AFGMG+DK
Sbjct: 247 TAEQ-----VAEHLSSRNIPAIAYHAGMNSDVRSKIQDDFMSGRQQLIVATIAFGMGIDK 301
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
D+ V+HY LP+S+E Y QEIGRAGRDG S C + + L + +Y D + AI
Sbjct: 302 SDIRYVVHYDLPKSVENYAQEIGRAGRDGGDSDCLVLANGDNLITLENFVYGDTPESSAI 361
Query: 549 NKFLCQVFTNGMN---SHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL----------- 594
L ++ + + G+ +V S S + +I+ + TLL LEL
Sbjct: 362 AIVLDEILKAAHSQSGNKGREWEVVLNSLSGQSNIRPLSLKTLLVYLELFNVIKPTYSYF 421
Query: 595 GEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSI 654
E +Y L E + N ++ V I S+ + + + +
Sbjct: 422 AEYKYKLLKGEEDILAGFN---------GERRDFVQAIFNSSDKAKIWFSINFDRLHQDY 472
Query: 655 GATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVR 714
+ V + L +G I + K Y I++ +L + L + S+ E ++
Sbjct: 473 ASDRQRVLKAINYLDEKGMIELQSKQMTQVYDILDPNFSAQSLQSSLFEQFSQKERSEIE 532
Query: 715 KLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDN-------CDVPNKIGQ 767
+++ + A F D CL + + YF D N C V +GQ
Sbjct: 533 RINHL--VAFFTSD--------------SCLSQQLAHYF-ADRNMTAACGTCSVC--LGQ 573
Query: 768 SS-----PFLRA----DIKVFLQSNLN---AKFTPRAVARILHGIASPAY 805
+ P+LR D Q+ +N +P ++R L G+ +P +
Sbjct: 574 LAVLPPQPYLRPLGELDFNALTQAGINKLDKACSPVLLSRFLCGLTTPIF 623
>gi|260775311|ref|ZP_05884208.1| aTP-dependent DNA helicase RecQ family [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608492|gb|EEX34657.1| aTP-dependent DNA helicase RecQ family [Vibrio coralliilyticus ATCC
BAA-450]
Length = 643
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 153/406 (37%), Positives = 227/406 (55%), Gaps = 15/406 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
LR +G++ RDGQ + I VLD KS + PTG+GKSLCYQ+ A+ LP LTLV+ PL+A
Sbjct: 14 LRTAFGFEQLRDGQYQVIDKVLDGKSCAAIFPTGSGKSLCYQLSALCLPHLTLVISPLLA 73
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I L+SSQ EEV + ++ G +K+L VS ER N F +
Sbjct: 74 LMKDQLEFLHSKGIAAASLNSSQSKEEVQRIMAQVRNGDVKILMVSVERLKNERFRHFLS 133
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
S IS +VVDEAHC+SEW HNFRP Y++L + L + +L +TATAT L D+
Sbjct: 134 QLS-ISQLVVDEAHCISEWGHNFRPDYLKLPQ--FQQELAIPQVLLLTATATQAVLDDMS 190
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
I ++ R NL +SV Q E+ + V S ++ K I+ ++ +
Sbjct: 191 KKFNIAPHDITVTGFYRPNLDISVMPCS---QAEKDDALLSVIS--QNPKLPTIVYVTQQ 245
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+ + I++ L + + +YH+G+ ++ R RIQ+ F S + + AT+AFGMG+DK D+
Sbjct: 246 N-SAERIAKLLAEQGVKATAYHAGLDSETRERIQQNFMSGQTDCIAATIAFGMGVDKSDI 304
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG+ S C L ++ L + +Y D + I+
Sbjct: 305 RRVIHFDLPKSIENYAQEIGRAGRDGQTSQCILLANEDGVCTLENFVYGDTPEYDEIHNV 364
Query: 552 LCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
+ Q + N + L +S R+ +K TLL +E+ ++
Sbjct: 365 IQQAVASEQNWEVVISRLSSDSNIRQLPLK-----TLLVYMEMAKV 405
>gi|336395559|ref|ZP_08576958.1| ATP-dependent DNA helicase RecQ [Lactobacillus farciminis KCTC
3681]
Length = 601
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 211/331 (63%), Gaps = 13/331 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
L +L+ +GYD+FR GQ E I+MVLD K TM ++PTG GKS+CYQ+PA I+ GLTLVV
Sbjct: 3 LEAILKEEFGYDTFRPGQKELIEMVLDGKKTMGIMPTGGGKSICYQLPATIMSGLTLVVS 62
Query: 249 PLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L I FL+S+ + E +R I+ GA+K+LFV+PE+ ++ +F
Sbjct: 63 PLISLMKDQVDSLNEDGIPATFLNSTVEWHDREERMRYIESGAVKLLFVAPEKIVDEEFY 122
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC-ILAMTATATTTT 366
S ++ ISL+ +DEAH +S W H+FR SY+ + L L+ +C LA+TATAT
Sbjct: 123 SWLSSLD-ISLIAIDEAHVLSSWGHDFRSSYLEMIQPL--KALSTDCAWLALTATATEEV 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D+ L++P N+++ RDNL L + R +++ Y V ++ +S ++ +
Sbjct: 180 QADLARILDVPDENIVKTGFDRDNLALKIE-----RGVDKTDY---VLNYVKSHENESGI 231
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+G+ + D I +L +N +SV YH+G+ +R QE F ++I V+VAT AFGMG+
Sbjct: 232 IYAGRREDVDKIYNFLKENDVSVGRYHAGLSDIERHNQQEDFLFDRINVIVATNAFGMGI 291
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
+K +V V+H+++P ++E Y QE+GRAGRDG
Sbjct: 292 NKTNVRYVLHFTVPGTIENYYQEVGRAGRDG 322
>gi|153833971|ref|ZP_01986638.1| DNA helicase [Vibrio harveyi HY01]
gi|148869709|gb|EDL68690.1| DNA helicase [Vibrio harveyi HY01]
Length = 641
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 198/641 (30%), Positives = 307/641 (47%), Gaps = 60/641 (9%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA LP LTLV
Sbjct: 4 DSLQQTLQSVFGFDSLRSGQQPVIEAVMNGHSAAAIFPTGSGKSLCYQLPATQLPHLTLV 63
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQL L I + SSQ EE + + ++ G IK+L +S ER N
Sbjct: 64 ISPLLALMKDQLSFLQSRGIAAASIDSSQSREETQQVMAGVKNGHIKILMISVERLKNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F L SL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 124 FREFIRQIPL-SLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQTLLLTATATPA 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
++D+ S +I N+ R NL +SV +++++ D + + + Y+
Sbjct: 181 VIKDMQSKFDIAGENITVTGFYRSNLDISVVPC--EEEHKQTQLNDIIAAAPKLPSIVYV 238
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
Q + ++ L I+ +YH+G+ + R +IQ+ F +++I +VAT+AFGMG
Sbjct: 239 TQ----QQTAEQVASSLIRLGINAHAYHAGMKSDIREKIQQQFMASQIDCIVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 295 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEP 354
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPE 605
+IN L Q+ N L ++S R+ +K TLL LEL ++ ++
Sbjct: 355 SSINYVLEQIRENIPQWEVMALRLSRDSNIRQLPLK-----TLLVYLELAKV--IEAKYS 407
Query: 606 LKVTCTLNFHKTTPTLL----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDV 661
F + P +L ++ + V I S + D+ + + + V
Sbjct: 408 YFAEYRFKFLQDQPFILNQFQGERRQFVEAIFACSTKAKVWCQVDLEALWMNYQSERSRV 467
Query: 662 SNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFH 721
L G I E K Y+++ + +S HL + E + ++ M
Sbjct: 468 VAALDYFHQNGWIELESKQLTDVYSVLPATQNQEVISQHLVELFQSKEQKDIERIHTM-- 525
Query: 722 AAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDN-------CDVPNKIGQSSPF--- 771
+D+ + + CL + YF D N C V GQ + F
Sbjct: 526 -----LDLFQSSD---------CLSHQLAHYF-ADHNAPAQCGHCSVCR--GQVASFPQP 568
Query: 772 ---------LRADIKVFLQSNLNAKFTPRAVARILHGIASP 803
L A + F+Q + A + AVAR L GI++P
Sbjct: 569 QQEQPELTHLSAWVDEFVQLSPTA-ISNAAVARFLCGISTP 608
>gi|89093406|ref|ZP_01166355.1| RecQ domain protein [Neptuniibacter caesariensis]
gi|89082385|gb|EAR61608.1| RecQ domain protein [Oceanospirillum sp. MED92]
Length = 653
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 190/598 (31%), Positives = 290/598 (48%), Gaps = 55/598 (9%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L + L+ +G+D FR+GQ ++ +LD S++ + PTGAGKSLCYQ A+ LP LTLVV
Sbjct: 2 DLNQSLQQTFGFDQFREGQESVVQQLLDGHSSLAIFPTGAGKSLCYQFTALHLPNLTLVV 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQL L I + S+ P+E + + I+ G IK+L +S ERF N F
Sbjct: 62 SPLLALMKDQLAFLKEKGIAAASIDSTLTPDENRQVMADIRSGKIKILMISVERFKNERF 121
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
F + +S++VVDEAHC+SEW HNFRP Y++L + R LN+ +L +TATAT
Sbjct: 122 RE-FIRSVPVSMLVVDEAHCISEWGHNFRPDYLKLPS--YRNELNIPLVLLLTATATRKV 178
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQN--------ERSAYVDEVFSFH 417
RD+ I +++Q R NL + V ++ NR + ++ V+ V
Sbjct: 179 KRDMAERFAIKPESVVQTGFYRSNLDIRVLPVADKNRDQLLLSQIMQQSTSEVNPV---- 234
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
S Y LQ + + ++ +L + +YH+G+ R +IQ F S VVV
Sbjct: 235 -SGIVYVTLQQTAEQ-----VAGFLQQQGVHAVAYHAGLDNDLRRKIQNDFMSGTTPVVV 288
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLR 535
AT+AFGMG+DK DV VIHY LP+S+E Y QEIGRAGRDG LS C LD I +
Sbjct: 289 ATIAFGMGIDKSDVRFVIHYDLPKSIENYSQEIGRAGRDGNLSRCITLASLDGIN--TVE 346
Query: 536 SLMYSDGVDEYAINKFLCQVFTNGMNSHGKL--CSLVKESASRKFDIKEEVMLTLLTCLE 593
+ +Y D + AI L + +S +L +L + R+ +K TLL LE
Sbjct: 347 NFIYGDTPEPSAIEYVLKSILEEQSDSQWELQINTLANSANIRQLPLK-----TLLVQLE 401
Query: 594 L-GEIQYL-QLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVA 651
L G I L + K ++ ++ + I++ ++ K+ D ++
Sbjct: 402 LMGVITPLYSYFADFKYKFVVDKDAVLNRFQGERSAFIEAIIQHTDFKRVWGTLDFESLY 461
Query: 652 NSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENC 711
G V + L I E K +++ + L+ L + + E+
Sbjct: 462 QQYGCDRQRVVAAMDYLHEENLIVLETKKITEVFSVNTQALNLADLAERLNHYFQDKESK 521
Query: 712 KVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+V ++ + F ++ CL N+ YF D+ D P + G S
Sbjct: 522 EVERIATLVR--FFELE--------------RCLTANLARYF---DDRDAPERCGHCS 560
>gi|378948232|ref|YP_005205720.1| RecQ familyATP-dependent DNA helicase [Pseudomonas fluorescens
F113]
gi|359758246|gb|AEV60325.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas fluorescens
F113]
Length = 642
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 190/590 (32%), Positives = 288/590 (48%), Gaps = 54/590 (9%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAIGAVLAGRSAAAIFPTGSGKSLCYQLSALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLPPVIHGGF----LSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
LM DQL L H G + S+Q + + + + G +K+L +S ER N F +
Sbjct: 65 LMQDQLAFLK---HHGIAAASIDSAQGRDATNDAMARARSGELKILMISVERLKNERFRN 121
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F ISL+VVDEAHC+SEW HNFRP Y++L + N+ +L +TATAT +
Sbjct: 122 -FLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQVLLLTATATPKVIA 178
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ + I ++++ R NL L V + G +++ ++ E + S Y LQ
Sbjct: 179 DMQAKFAIAATDVVTTGFYRSNLNLLVEPVLGADKRARLVQWLGERAG--QPSIVYVTLQ 236
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + I+ +L + I ++YH+G+P + R IQ F + +VAT+AFGMG+D
Sbjct: 237 RTAEQ-----IAEHLGQHGIVAEAYHAGLPHEQREDIQRRFMGGQSNCIVATIAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D +
Sbjct: 292 KSDIRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELAG 351
Query: 548 INKFLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPE 605
I L ++ G + + L L +S R+ +K TLL LEL + + P
Sbjct: 352 IRCVLDELKAAGPDGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRRL----IAPR 402
Query: 606 LKVTCTLNFH-KTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTI 659
F T P L ++ V+ I++ S + + + A
Sbjct: 403 YAYFAEYRFKFLTEPQELLERFEGERRDFVSAIIQTSSRARAWATVNFDGMYQQYHAERN 462
Query: 660 DVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRM 719
V L + +G I E K Y++++V D LSA L + + E+ +V ++ M
Sbjct: 463 RVVKALDYFQEKGWIELESKQMTEVYSVLDVDLDVQVLSAELHAYFTRHEHSEVARIHAM 522
Query: 720 FHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + YF GDDN P + G S
Sbjct: 523 LE--LFATD--------------HCLGYRLAQYF-GDDNA--PRQCGHCS 553
>gi|108759046|ref|YP_633000.1| ATP-dependent DNA helicase RecQ [Myxococcus xanthus DK 1622]
gi|108462926|gb|ABF88111.1| ATP-dependent DNA helicase, RecQ family [Myxococcus xanthus DK
1622]
Length = 661
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 179/543 (32%), Positives = 276/543 (50%), Gaps = 26/543 (4%)
Query: 182 DEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTML-VLPTGAGKSLCYQIPAMIL 240
D A +L +LR +G FR GQ E + +L + L V PTG GKSLCYQ+PA++L
Sbjct: 15 DGARHSSLDTVLRERFGLTDFRPGQREVLDALLGPNAAALAVFPTGGGKSLCYQLPALLL 74
Query: 241 PGLTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
G+T+VV PL+ALM DQ+ L I L +S ++ E + ++ G++K+L+V+PE
Sbjct: 75 EGITVVVSPLIALMKDQIDALARQGIRAARLDASLSVDDSREVTQALRDGSLKLLYVAPE 134
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR-LNVECILAM 358
RF N F ++ ISL VDEAHCVSEW HNFRP Y++L + AR L+ E ILA+
Sbjct: 135 RFNNERFTALLRELR-ISLFAVDEAHCVSEWGHNFRPDYLKLAKA---ARDLSAERILAL 190
Query: 359 TATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV-DEVFSFH 417
TATAT + +RD+ IP N + R NL L + R A++ + S
Sbjct: 191 TATATPSVVRDICQGFGIPEENAVVTGFYRQNLTLETT---PVHAEARDAFLLGRLGSRA 247
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
Y+ Q + ++ +L + +YH+G+ + R R+QE + ++ +VV
Sbjct: 248 PGPTIVYVTQ----QKTAERVAAFLATEGLPASAYHAGLEPEVRERVQESWMASANGIVV 303
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLR 535
AT+AFGMG+DK DV AV HY+LP+ LE Y QEIGRAGRDG S LF DD+ L
Sbjct: 304 ATIAFGMGIDKADVRAVYHYNLPKGLESYSQEIGRAGRDGAPSVVELFACPDDVP--SLE 361
Query: 536 SLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELG 595
+ D AI + ++ G + +L S + D++ V+ T LT LEL
Sbjct: 362 NFALGDTPTREAIQSLVTELLGLGPELSVDMFAL-----STRHDVRPLVLRTALTYLELE 416
Query: 596 EI--QYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANS 653
+ Q KV + ++ + + + +++ + Y D VA+S
Sbjct: 417 GVLRQGTPYYAGYKVQPLMPIDALVGRFQGERVQFLRDVFSQAKKGRTWYSLDPAEVASS 476
Query: 654 IGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKV 713
+ V + L+ +G + ++ +P +T + D AL+A L + + E +V
Sbjct: 477 LRQPRERVVRAIEYLEEQGLVLLQVSEPRQRFTRLRPQEDAAALTALLHQRFQQREAQEV 536
Query: 714 RKL 716
++
Sbjct: 537 TRV 539
>gi|195998273|ref|XP_002109005.1| hypothetical protein TRIADDRAFT_11173 [Trichoplax adhaerens]
gi|190589781|gb|EDV29803.1| hypothetical protein TRIADDRAFT_11173, partial [Trichoplax
adhaerens]
Length = 725
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 216/703 (30%), Positives = 343/703 (48%), Gaps = 94/703 (13%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLVA 252
+GY +F+ GQ + I +L ST+ +LPTG GKSLCYQ+PA + +TLV+ PLV+
Sbjct: 5 FGYCAFKTGQRKVISRILCGMSTLAILPTGGGKSLCYQLPARLYAARSECITLVISPLVS 64
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA--DFLSIF 310
LM DQ+ PP + G L S+ + + + ++ I VL SPE ++A D +
Sbjct: 65 LMEDQVSKFPPFLKGACLHSNLSQSQRKKVYKQLEDKKISVLLTSPETLVSALNDGERLR 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
T ++ +DE HCVSEWSH+FRP Y+ L L L V+C+L +TATAT T+ V
Sbjct: 125 TLLPPVAFACIDEIHCVSEWSHHFRPCYLLLCKLLKER-LGVKCLLGLTATATVPTINSV 183
Query: 371 MSALEIPLSN--LIQKAQLRDNLQLSVS------------LSGNNRQNERSAYV-----D 411
+ L I S+ +IQ L +NL +SVS L+GN + S + D
Sbjct: 184 CAHLGIANSDDGVIQGITLPENLHISVSCDDRKDNALVTLLNGNRFLFKNSIIIYCTRRD 243
Query: 412 EVFSFHRSSKHYYILQ----ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
E + + Y + Q +S T +SR + D +V+ YH+G+ + R +Q+
Sbjct: 244 ETERIAQLIRSYLLRQTFEGMSNVTEVTYTLSREV-DLEHAVECYHAGMSPRQRRLVQKN 302
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F S + ++V+ATVAFGMGLDK DV +IHY++P++ E +VQEIGRAGRDG ++CH+ L
Sbjct: 303 FMSGRTKIVIATVAFGMGLDKADVRGIIHYNMPKTFETFVQEIGRAGRDGLPAHCHVILG 362
Query: 527 -DDITYFRLRSLMYSDGVDEYAINKFLCQVF----------TNGMNSH---------GKL 566
D+ L +Y++ V+ Y I +F+ +F + G S G
Sbjct: 363 EDNHDIRELERHVYANAVEPYTIKRFINMLFPFCDCIQEKKSEGSRSEDHEPQNYAIGHE 422
Query: 567 CSLVKESASRKFDIKEEVMLTLLTCLEL---GEIQYLQLLPEL-KVTCTLNFHK----TT 618
++ + + DI+EEV TLL +++ G I L + + ++ C+ ++ K T
Sbjct: 423 VTIPIDKVTVNLDIREEVFKTLLCYIDMQFPGLISILSPIHSVCEIICSDSYWKKLVQTV 482
Query: 619 PTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMR--GEITY 676
P + A + +K+ + + + F VA+ +G V +L L+ R + T
Sbjct: 483 PIITA---AVKLQKIKRLDKRSPCFTFPYVQVADKMGWDYEPVRRELFKLQWRKSNDNTN 539
Query: 677 ELKDPAYCYTI------VEVP-----SDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVF 725
+ T V VP SD ++ L + + E ++ L ++ +AA+
Sbjct: 540 KFIKSGINVTFTINSFHVRVPCCLSDSDRDNIACQLLDIVRQKEKDSLQNL-QIIYAALH 598
Query: 726 AVDV--CEKTHGCNGSLHTPCLQKNILDYFRGDD------------NCDVPNKIGQSSPF 771
+V C+ + + LQ I +YF+ + +P S
Sbjct: 599 SVAYKDCKDCIDTVDPVKSCELQTLIREYFKSQEPSSLLLSKNINTEAHLPTLQVSDSTI 658
Query: 772 --LRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSK 812
LR DI FL S N KF ++ARI HGI SPA+P+ +W +
Sbjct: 659 DGLRRDICSFL-STYNEKFNGSSIARIFHGIGSPAFPAEVWYR 700
>gi|424920874|ref|ZP_18344235.1| RecQ [Pseudomonas fluorescens R124]
gi|404302034|gb|EJZ55996.1| RecQ [Pseudomonas fluorescens R124]
Length = 644
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 184/583 (31%), Positives = 281/583 (48%), Gaps = 40/583 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQVPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLKRHGISAGSIDSAQSRDDANDVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+V+DEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVIDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQTLLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I ++++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 TKFAIAEADVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSERPG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P R IQ+ F + + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLGRNGIQAEAYHAGLPNDQREAIQKRFMAGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEREGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQ-YLQLLPEL 606
L ++ + L L +S R +K TLL +EL G I E
Sbjct: 355 VLEEMQAAAPEGQWEFLLGPLADQSNIRTLPLK-----TLLVQMELRGLIAPRYAYYAEY 409
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ L ++ VA I++ S + + + A V L
Sbjct: 410 RFKYLLEPEALLERFEGERRDFVAAIIQTSSRARTWATVNFEAMYTQYSAERNRVVKALD 469
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
+ +G + E K Y ++ D LSA L + E ++ ++ M +F
Sbjct: 470 YFQEKGWVELESKQMTEVYNVLHSDFDSAVLSAELHACFTRHEQTEIARIHAMLE--LFG 527
Query: 727 VDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+ CL + +YF GD N P + G S
Sbjct: 528 TER--------------CLGYRLAEYF-GDHNA--PERCGHCS 553
>gi|345879526|ref|ZP_08831163.1| hypothetical protein Rifp1Sym_fb00050 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223457|gb|EGV49923.1| hypothetical protein Rifp1Sym_fb00050 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 651
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 198/628 (31%), Positives = 313/628 (49%), Gaps = 55/628 (8%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ R GQ ++ +LD S V PTG GKSLCYQ+PA++LPG+TLVV PL+ALM D
Sbjct: 26 FGFTELRPGQQAVMQHLLDGHSATAVFPTGGGKSLCYQLPALLLPGVTLVVSPLIALMKD 85
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I L SS +E + ++ ++ G +++L+V+PERF N F ++
Sbjct: 86 QIDALTARGISACRLDSSLTADEYRKVVQQLKSGELRLLYVAPERFNNERFRAMLKPIQ- 144
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I+L VDEAHC+SEW HNFRP Y++L A R + E ILA+TATAT L D+ E
Sbjct: 145 IALFAVDEAHCISEWGHNFRPDYLKL-AGFAR-QFGAERILALTATATPAVLEDICRLFE 202
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I + R NL + ++ +ER + E S R+ I+ ++ +
Sbjct: 203 IKPDCAVSTGFYRPNLNIETTVV---EASERDRVLLEAIS--RNPPGPVIVYVTLQK-TA 256
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ +++ L D + ++YH+G+ R +QE F +VVAT+AFGMG+DK ++ AV
Sbjct: 257 EAVAQRLADAGLPARAYHAGLKDDIRGEVQEWFMRASHAIVVATIAFGMGVDKANIRAVY 316
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAINKFLC 553
HY+LP+SLE Y QEIGRAGRDG S C + + DD+ L + +Y D D+ A+ +
Sbjct: 317 HYNLPKSLENYSQEIGRAGRDGAPSVCQMLVCPDDLNV--LENFVYGDTPDKAALYGLID 374
Query: 554 QVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLN 613
++F + L +L S + DI+ V+ TLLT LEL YL+
Sbjct: 375 ELFAQEPSFDVSLYTL-----SARHDIRPLVLRTLLTYLELA--GYLEGGTPFYADYKFK 427
Query: 614 FHKTTPTLLA----DKDKMVATILKKSETKQGQYVFDI-PTVANSIGATTIDV------- 661
+++ +L+ + +A + + + +G+ F I PT A TT D
Sbjct: 428 PLQSSAEILSRFKGEHRNFLAALFRHA--VKGRIWFSIDPTEAAVALQTTRDRIVQALEW 485
Query: 662 --SNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRM 719
QLL +K+ G I + + + P AL++ L + L + E+ ++ +L ++
Sbjct: 486 LGEQQLLEVKVAG-IRHRFQR-------MRQPDTTEALASELYQRLIKREDAEIHRLQQI 537
Query: 720 FHAAVFAVDVCEK---THGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQS-SPFLRAD 775
+ +D C+ PC + RG + ++P + Q+ S +
Sbjct: 538 LD--LVTLDGCQSNALAQHFGEQREAPCGHCSWCR--RG--SSELPPRRAQTISDTFWQE 591
Query: 776 IKVFLQSNLNAKFTPRAVARILHGIASP 803
+ Q PR ++R L GI SP
Sbjct: 592 VSAVRQEQTEILMQPRLLSRFLCGITSP 619
>gi|333892043|ref|YP_004465918.1| RecQ domain-containing protein [Alteromonas sp. SN2]
gi|332992061|gb|AEF02116.1| RecQ domain-containing protein [Alteromonas sp. SN2]
Length = 669
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 152/418 (36%), Positives = 235/418 (56%), Gaps = 22/418 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ ++G+ SFR GQ E + +L+++S++ + PTG+GKSLCYQ A LP LTLVV PL+
Sbjct: 8 LLQTLFGFPSFRSGQQEVVDSLLNQRSSLAIFPTGSGKSLCYQFVATQLPHLTLVVSPLL 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I + + E+ + + ++ G K+L VS ERF N F F
Sbjct: 68 ALMKDQLAFLHSKGIAAASIDLTLTAEQNKQVMNDVRSGECKILMVSVERFKNERFRQ-F 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ +S++V+DEAHC+SEW HNFRP Y++L A + LN+ +L +TATAT D+
Sbjct: 127 IESIQVSMLVIDEAHCISEWGHNFRPDYLKLPA--YQQELNIPLVLLLTATATKKVKLDM 184
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I N++Q R NL L+V +N+ A ++E+ + Y LQ +
Sbjct: 185 ARRFNIAPDNIVQTGFYRPNLNLNVLPVVEKNKNQ--ALLEELQRQQGAGIVYVTLQQTA 242
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++R+L N ++ +YH+G+ + R IQ+ F NK++VVVAT+AFGMG+DK D
Sbjct: 243 EQ-----VARFLQQNGVAASAYHAGLDSDIRQNIQQDFMVNKLQVVVATIAFGMGIDKSD 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+HY LP+S+E Y QEIGR GRDG+ + C + + + + +Y D D+ AI +
Sbjct: 298 IRFVVHYDLPKSIENYSQEIGRGGRDGQNANCTVLANLDGLVTIENFVYGDTPDKSAIER 357
Query: 551 FLCQVFTNG-----MNSHGKLCSLVKE------SASRKFDIKEEVMLTLLTCLELGEI 597
+ + + SHG + S S +I++ + TLL LEL ++
Sbjct: 358 VIKDIASQAPEQSTSASHGGASGGTYQWETQINSLSTLSNIRQLPLKTLLVQLELAKV 415
>gi|330447859|ref|ZP_08311507.1| ATP-dependent DNA helicase, RecQ family protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328492050|dbj|GAA06004.1| ATP-dependent DNA helicase, RecQ family protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 638
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 175/535 (32%), Positives = 269/535 (50%), Gaps = 27/535 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+DS R GQ E I VLD S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 6 LKKYFGFDSLRTGQEEVITRVLDGHSAAAIFPTGSGKSLCYQLPAIELPHLTLVISPLLA 65
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SSQ ++ + ++ ++ G IKVL +S ER N F +
Sbjct: 66 LMKDQLDFLASKGIPAASIDSSQTWQQTQQVMQQVRSGEIKVLMISVERLKNERFRHFIS 125
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
S ISL+VVDEAHC+SEW HNFRP Y++L + LN+ +L +TATAT + D+
Sbjct: 126 QVS-ISLLVVDEAHCISEWGHNFRPDYLKL--PHYQQSLNIPQVLLLTATATPAVINDMQ 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNR-----QNERSAYVDEVFSFHRSSKHYYIL 426
I ++I R NL L++ + ++ Q++ +A + S Y L
Sbjct: 183 EKFNIAKDDIIVTGFYRHNLVLTILAAQDDEKLDVLQHQLTAQPN------VPSIVYVTL 236
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
Q + + I+ L N I ++YH+G+ A+ R IQ+ F + I +VAT+AFGMG+
Sbjct: 237 QHTAEE-----IADTLTRNHIPAQAYHAGMDAERRQNIQQQFMAGSINCIVATIAFGMGI 291
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C + + L++ +Y D D
Sbjct: 292 DKSDIRQVIHFDLPKSIENYSQEIGRAGRDGKESTCTVIANKSGLNVLQNFIYGDTPDRS 351
Query: 547 AINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLP 604
AI L ++ + + ++ S+ +I+ + TLL LE+ I
Sbjct: 352 AIAAVLAEI-----KAQSQQWEVMNNRLSKDANIRLLPLKTLLVYLEIRHIIEPLYTYFA 406
Query: 605 ELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
+ + +N + ++ V I S + + D+ + A V
Sbjct: 407 DYRFKLNVNRQEIINRFNGERRHFVEAIFACSSKAKIWHTLDMDALWQGYQADRKRVVAA 466
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRM 719
+ +G IT E K Y I D S L + + EN ++++++ M
Sbjct: 467 IDYFNEQGWITLESKQMTDVYKITNHQFDIEQESEALYQLFQQKENSEIKRIESM 521
>gi|398864825|ref|ZP_10620354.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM78]
gi|398244418|gb|EJN29971.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM78]
Length = 642
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 186/585 (31%), Positives = 290/585 (49%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ + VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEAVVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ ++ + + G +K+L VS ER N F + F
Sbjct: 65 LMQDQLAFLERHGIAAGSIDSTQGRDDASDVMARARSGELKILMVSVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ + + S Y LQ +
Sbjct: 182 AKFAIEPGDVVTTGFYRPNLNLWVEPVRGQDKRRRLVEWMSQRPG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P + R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLQRNGIQAEAYHAGLPHEQREGIQKRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPERDGIRY 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ G+ L+ A + +I++ + TLL LEL + + P
Sbjct: 355 VLDEM--QAAVPEGQWEFLLGPLADQS-NIRQLPLKTLLVQLELRGL----IAPRYAYYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P +L ++ VA I++ S + + + A V
Sbjct: 408 EYRFKYLQEPEVLLARFEGERRDFVAAIIQTSSRARTWATVNFEALYEQHRAERSRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G + E K Y++++ D ALS L + E +V ++ M +
Sbjct: 468 LDYFQEKGWVELESKQMTEVYSLLQSGLDSAALSEELHAGFTRHEQTEVARIHAMLD--L 525
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA D CL + +YF GD+N VP + G S
Sbjct: 526 FATD--------------RCLGYRLAEYF-GDEN--VPRQCGHCS 553
>gi|423694802|ref|ZP_17669292.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas fluorescens
Q8r1-96]
gi|388009347|gb|EIK70598.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas fluorescens
Q8r1-96]
Length = 642
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 188/587 (32%), Positives = 285/587 (48%), Gaps = 48/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQETAIGAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q +E + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLKRHGIAAASIDSAQGRDEANDAMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + N+ +L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQREFNIPQVLLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAAVDVVTTGFYRSNLNLLVEPVLGADKRARLVQWLGERAG--QPSIVYVTLQRTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L + I ++YH+G+P + R IQ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLGRHGIEAEAYHAGLPHEQREDIQRRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELAGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
L ++ + + L L +S R+ +K TLL LEL + + P
Sbjct: 355 VLDELQAAAPDGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRRL----IAPRYAY 405
Query: 609 TCTLNFH-KTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F T P L ++ V+ I++ S + + + A V
Sbjct: 406 FAEYRFKFLTEPQQLLERFEGERRDFVSAIIQTSSRARAWATVNFDGMYQQYHAERNRVV 465
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G I E K Y+++E D LS+ L + + E ++ ++ M
Sbjct: 466 KALDYFQEKGWIELESKQMTEVYSVLEGGLDTQVLSSELHAYFTRHEQGEIARIHAMLE- 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+FA D CL + YF GDDN P + G S
Sbjct: 525 -LFATD--------------RCLGYRLAQYF-GDDNA--PRECGHCS 553
>gi|242023841|ref|XP_002432339.1| ATP-dependent DNA helicase Q4, putative [Pediculus humanus corporis]
gi|212517762|gb|EEB19601.1| ATP-dependent DNA helicase Q4, putative [Pediculus humanus corporis]
Length = 1250
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 177/526 (33%), Positives = 276/526 (52%), Gaps = 65/526 (12%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLVA 252
+G+ FR GQ E I +L ST+L++ TG GKSLCYQ+PA + +TLV+ PLV+
Sbjct: 538 FGHTYFRPGQEETIMRMLSGLSTLLIISTGGGKSLCYQLPAYLYAKRSKCITLVISPLVS 597
Query: 253 LMIDQLRHLP------PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD- 305
LM DQ+ +H G L+ QR E V E + G + L VSPE ++ D
Sbjct: 598 LMEDQVSGSSCSFFKIGCLHTG-LTDRQR-ENVLENTK---NGKLHALLVSPEAIVSGDS 652
Query: 306 ---FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
F SI I+ +DE HC+S+WSHNFRPSY+ + +LR + + +L +TATA
Sbjct: 653 SKGFGSILKQLPPIAFACIDEVHCISQWSHNFRPSYLMVNK-VLREKFGIATVLGLTATA 711
Query: 363 TTTTLRDVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
T +T+R + L+I +I+ + DN+ LSVS+ + + E F S
Sbjct: 712 TVSTIRSITRELKIESEKGVIKDIPIPDNILLSVSVDDDKDEALIKLLTSEKFQDFNSIL 771
Query: 422 HY------------YILQISGKHFETDLI----SRYLCDNSISVKSYHSGIPAKDRSRIQ 465
Y YI + F+ + +R L S + +SYH+G+ R ++Q
Sbjct: 772 IYCTRRDDCERLATYIRTVMQNFFDCNETHKKKNRKL---SWTAESYHAGMAGPRRKQVQ 828
Query: 466 ELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ F + +R+VVATVAFGMG++K+D+ +VIHY++P E YVQE+GRAGRDG ++CHLF
Sbjct: 829 KAFMNGNVRIVVATVAFGMGINKKDIRSVIHYNMPRDFESYVQEVGRAGRDGMFAHCHLF 888
Query: 526 LD----DITYFRLRSLMYSDGVDEYAINKFLCQVFT----------NGMNSHGKLCSLVK 571
LD D+ L+ + S+ ++ + + K L +VF NG +H + K
Sbjct: 889 LDPNGKDVN--ELKRHINSNTIERHVLRKLLERVFVKCDCPNVKNQNGCTTHESGFDMKK 946
Query: 572 ESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDK---- 627
+ D EE +LTLL LEL + +++++LP + C + + + K
Sbjct: 947 --TVQALDTPEENILTLLCYLELDDRKFVKVLPPAYLNCKIKSYNGLNKIRTSAFKCPPL 1004
Query: 628 MVATILKKSETKQGQ--YV-FDIPTVANSIGATTIDVSNQLLNLKM 670
A L +++TK+ + Y+ F++ V+N IG + V +QL NL+
Sbjct: 1005 AYAFALDENQTKRKKCNYLDFNVIDVSNGIGWKSSIVKSQLKNLEW 1050
>gi|345864576|ref|ZP_08816775.1| ATP-dependent DNA helicase RecQ [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345124273|gb|EGW54154.1| ATP-dependent DNA helicase RecQ [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 638
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 198/628 (31%), Positives = 313/628 (49%), Gaps = 55/628 (8%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ R GQ ++ +LD S V PTG GKSLCYQ+PA++LPG+TLVV PL+ALM D
Sbjct: 13 FGFTELRPGQQAVMQHLLDGHSATAVFPTGGGKSLCYQLPALLLPGVTLVVSPLIALMKD 72
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I L SS +E + ++ ++ G +++L+V+PERF N F ++
Sbjct: 73 QIDALTARGISACRLDSSLTADEYRKVVQQLKSGELRLLYVAPERFNNERFRAMLKPIQ- 131
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I+L VDEAHC+SEW HNFRP Y++L A R + E ILA+TATAT L D+ E
Sbjct: 132 IALFAVDEAHCISEWGHNFRPDYLKL-AGFAR-QFGAERILALTATATPAVLEDICRLFE 189
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I + R NL + ++ +ER + E S R+ I+ ++ +
Sbjct: 190 IKPDCAVSTGFYRPNLNIETTVV---EASERDRVLLEAIS--RNPPGPVIVYVTLQK-TA 243
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ +++ L D + ++YH+G+ R +QE F +VVAT+AFGMG+DK ++ AV
Sbjct: 244 EAVAQRLADAGLPARAYHAGLKDDIRGEVQEWFMRASHAIVVATIAFGMGVDKANIRAVY 303
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAINKFLC 553
HY+LP+SLE Y QEIGRAGRDG S C + + DD+ L + +Y D D+ A+ +
Sbjct: 304 HYNLPKSLENYSQEIGRAGRDGAPSVCQMLVCPDDLNV--LENFVYGDTPDKAALYGLID 361
Query: 554 QVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLN 613
++F + L +L S + DI+ V+ TLLT LEL YL+
Sbjct: 362 ELFAQEPSFDVSLYTL-----SARHDIRPLVLRTLLTYLELA--GYLEGGTPFYADYKFK 414
Query: 614 FHKTTPTLLA----DKDKMVATILKKSETKQGQYVFDI-PTVANSIGATTIDV------- 661
+++ +L+ + +A + + + +G+ F I PT A TT D
Sbjct: 415 PLQSSAEILSRFKGEHRNFLAALFRHA--VKGRIWFSIDPTEAAVALQTTRDRIVQALEW 472
Query: 662 --SNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRM 719
QLL +K+ G I + + + P AL++ L + L + E+ ++ +L ++
Sbjct: 473 LGEQQLLEVKVAG-IRHRFQR-------MRQPDTTEALASELYQRLIKREDAEIHRLQQI 524
Query: 720 FHAAVFAVDVCEK---THGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQS-SPFLRAD 775
+ +D C+ PC + RG + ++P + Q+ S +
Sbjct: 525 LD--LVTLDGCQSNALAQHFGEQREAPCGHCSWCR--RG--SSELPPRRAQTISDTFWQE 578
Query: 776 IKVFLQSNLNAKFTPRAVARILHGIASP 803
+ Q PR ++R L GI SP
Sbjct: 579 VSAVRQEQTEILMQPRLLSRFLCGITSP 606
>gi|374673897|dbj|BAL51788.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. lactis
IO-1]
Length = 592
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 210/331 (63%), Gaps = 10/331 (3%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ ++GYD+FR+GQ + I+ VLD ++T+ +LPTGAGKS+CYQ+PA+I PGLTLV+
Sbjct: 2 NLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVI 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I F++S+ E + +R ++ G IK+LFV+PERF + D+
Sbjct: 62 SPLISLMKDQVDQLNIAGIPATFINSTLEDSESYQRMRQVENGEIKLLFVAPERF-SLDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
++F I LV +DEAHC+S+W H+FRPSY+ AS L+ +LA+TATAT
Sbjct: 121 FNVFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDF-ASHLQYLPTNPTVLALTATATPKV 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D+ L I S+ I+ LR+NL+ V + G +++ Y+ ++ S+ I+
Sbjct: 180 ADDIQKLLSISPSHTIKTGFLRENLRFEV-VKGMDKRTFLKNYLK-----NQESEAAGII 233
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
S + E + I +L N YH+G+ ++R QELF +++ ++VAT AFGMG+
Sbjct: 234 YASTRK-EVEEICEWLNHNHFKAVRYHAGLSEQERQMNQELFLFDEVPIMVATNAFGMGI 292
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
+K +V VIHY+LP ++E Y QE GRAGRDG
Sbjct: 293 NKPNVRFVIHYALPATIESYYQEAGRAGRDG 323
>gi|345487610|ref|XP_001601939.2| PREDICTED: ATP-dependent DNA helicase Q4 [Nasonia vitripennis]
Length = 571
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 162/445 (36%), Positives = 243/445 (54%), Gaps = 38/445 (8%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG----LTLVVCPLVA 252
+G+ FRDGQ +I L T++ L TG+GKSLCYQ+PA + +TLV+ PLV+
Sbjct: 100 FGHKQFRDGQEISIMRTLSGLPTLVTLTTGSGKSLCYQLPAYLYAQRSKCITLVISPLVS 159
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD----FLS 308
LM DQ+ +P + L ++Q P A + ++ G I +L VSPE D +++
Sbjct: 160 LMDDQISKMPDFLPAACLHTNQSPMLHANILNDLKAGKITILLVSPEALAACDTSKSYVT 219
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
IF I+ +DEAHC+S+WSHNFRPSY+ L +LR LNV+ ILA+TATA+ T+
Sbjct: 220 IFRHLPPIAFACIDEAHCISQWSHNFRPSYLML-CKILREHLNVKNILALTATASKYTVS 278
Query: 369 DVMSALEIP--LSNLIQKAQLRDNLQLSVSLSGNNR-------QNERSAYVDEVFSF--- 416
++ L+I + +I L NL L++S Q+ER + + +
Sbjct: 279 SIIDLLQIKDEKTGVISDKPLPSNLNLTISHDKKKEDALISLLQSERFIQYNSIIIYCTR 338
Query: 417 -HRSSKHYYILQISGK--HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKI 473
S+ +L+I K +F+ + R + S ++YH+G+ A R + F +KI
Sbjct: 339 REECSRIAGLLRICLKDENFKLNHSKRNEKNISAIAEAYHAGLSAHRRKSVYTAFMKSKI 398
Query: 474 RVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL---DDIT 530
R++VATVAFGMG++K D+ +VIHY++P + E YVQEIGRAGRDG ++CHLFL ++
Sbjct: 399 RIIVATVAFGMGINKPDIRSVIHYNMPSNFESYVQEIGRAGRDGSPAHCHLFLNAQENSD 458
Query: 531 YFRLRSLMYSDGVDEYAINKFLCQVFT--NGMN---------SHGKLCSLVKESASRKFD 579
LR + +DG+D I L ++F N N G + E D
Sbjct: 459 ECELRRHINADGIDRRTIRHLLKKIFIPCNCKNLSKADTKSRCQGHEVAFSVEDTVTSLD 518
Query: 580 IKEEVMLTLLTCLELGEIQYLQLLP 604
IK+E + TLL LEL +++LLP
Sbjct: 519 IKQETIATLLCYLELYFQCFVKLLP 543
>gi|170726640|ref|YP_001760666.1| ATP-dependent DNA helicase RecQ [Shewanella woodyi ATCC 51908]
gi|169811987|gb|ACA86571.1| ATP-dependent DNA helicase, RecQ family [Shewanella woodyi ATCC
51908]
Length = 645
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 179/548 (32%), Positives = 277/548 (50%), Gaps = 37/548 (6%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ +LL+ +G+ FR GQ + ++ +LD S + PTG+GKSLCYQ+PA+ LP LT+VV
Sbjct: 1 MQQLLQSHFGFSEFRPGQEQVVRAILDGHSAAAIFPTGSGKSLCYQLPALCLPHLTIVVS 60
Query: 249 PLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL+AL+ DQ+ L I + S+Q EE E + ++ G IK+L +S ER N F
Sbjct: 61 PLLALIQDQISFLNSKGIAAASIDSTQSREETNEVMAGVRAGVIKILMISVERLNNERFR 120
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
F A ISL+VVDEAHC+SEW HNFRP Y++L + + LN+ L +TATAT+ +
Sbjct: 121 Q-FIAGVPISLLVVDEAHCISEWGHNFRPDYLKLPS--YQQALNIPQTLLLTATATSKVI 177
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYI- 425
D+ S I ++ R NL L V LS ++ + S ++ + SS Y+
Sbjct: 178 EDMGSKFGIKPEHITLTGFYRPNLHLGVKGLSSTDKLDYLSTWLQ---TRQLSSGIIYVT 234
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
LQ + + L +R IS K+YH+G+ ++ R IQ F S + ++VAT+AFGMG
Sbjct: 235 LQQTAEKVAEQLKAR-----GISAKAYHAGMTSEVRHAIQHQFMSGEQGIIVATIAFGMG 289
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ V+HY LP+S+E Y QEIGRAGRDG S C + + L + +Y D +
Sbjct: 290 IDKSDIRFVVHYDLPKSIENYAQEIGRAGRDGGDSECLVLANGDNLSTLENFVYGDTPEP 349
Query: 546 YAINKFLCQVFTNGM---NSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-------- 594
I L ++ +S LV S S + +I+ + TLL LEL
Sbjct: 350 SGIGIVLNEIKKAAFEHRSSQLPQWELVLNSLSNQSNIRPLSLKTLLVYLELLNVIKPTY 409
Query: 595 ---GEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVA 651
E ++ LLPE +V A++ + I ++ + + ++
Sbjct: 410 SYFAEYKFKFLLPEAEV---------IEYFTAERRDFIRAIFTTADRAKIWSSVNFDSLN 460
Query: 652 NSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENC 711
+ + V + L +G I + K Y IV + L+A L+K E
Sbjct: 461 QTYASDRQRVLKAINYLDEKGMIELQSKQMTQVYQIVNSEFELKELTAKLSKRFLNKEAS 520
Query: 712 KVRKLDRM 719
+V +++ +
Sbjct: 521 EVARINHL 528
>gi|333908704|ref|YP_004482290.1| RecQ familyATP-dependent DNA helicase [Marinomonas posidonica
IVIA-Po-181]
gi|333478710|gb|AEF55371.1| ATP-dependent DNA helicase, RecQ family [Marinomonas posidonica
IVIA-Po-181]
Length = 653
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 148/410 (36%), Positives = 229/410 (55%), Gaps = 22/410 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ ++G++SFR GQ ++ +L S++ V PTG+GKSLCYQ A LP LTLV+ PL+A
Sbjct: 8 LKSLFGFESFRQGQAPVVEQLLAGHSSLAVFPTGSGKSLCYQYTATQLPHLTLVISPLIA 67
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I L S+Q EE + ++ G IK+L +S ERF N +F F
Sbjct: 68 LMHDQLAFLKAKGIAAASLDSTQSREESQAVMAGVKTGQIKILMISVERFKNENFRR-FI 126
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + L + +L +TATAT +D+
Sbjct: 127 QQIAISLLVVDEAHCISEWGHNFRPDYLKL--PFYQQELKIPLVLLLTATATRRVQKDMA 184
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYI-LQIS 429
+I +++Q R NL + + + + N+ +D++ + + Y+ LQ +
Sbjct: 185 QKFQIQPQHIVQTGFYRSNLDIELQPIPAEQKANQ----LDQILRHTQGASIVYVTLQKT 240
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ ++++L ++YH+G+ + DR++IQ+ F S + R++VAT+AFGMG+DK
Sbjct: 241 AED-----VAQFLIQQGHQAQAYHAGLSSDDRAQIQQHFMSGQTRIIVATIAFGMGIDKA 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
D+ V+HY LP+S+E Y QEIGRAGRD S C L + L + +Y D + + I
Sbjct: 296 DIRLVVHYDLPKSIENYSQEIGRAGRDQNHSQCILLANLEGLHTLENFVYGDTPERHNIA 355
Query: 550 KFLCQVF--TNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
L + T+ ++ L + R +K TLL LEL ++
Sbjct: 356 CLLEAIRQETDQQEWETQVYHLANHTNIRSLALK-----TLLVQLELKQV 400
>gi|422668209|ref|ZP_16728067.1| ATP-dependent DNA helicase RecQ, partial [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330980576|gb|EGH78679.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 373
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 211/362 (58%), Gaps = 12/362 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ AI VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYTQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL LP I + S+Q +E+A+ + + G +K+L +S ER N F + F
Sbjct: 65 LIQDQLAFLPRHGISAASIDSAQSRDEIADVMARARSGELKILMISVERLKNERFRN-FI 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + N+ L +TATAT + D+
Sbjct: 124 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQREFNIPQTLLLTATATPQVIIDMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++I R NL L V +SG +++ +++E + + Y LQ +
Sbjct: 182 DKFAIAPEDVITTGFYRANLHLWVKPVSGRDKRRRLVEWLNERRG--QPTIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N + +YH+G+P R IQ+ F ++ +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAAHLEQNGLPASAYHAGLPNDQRESIQKQFMGGRLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG S C + + + L + +Y D ++ I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGAASDCLVLANRDSLNVLENFVYGDTLEREGIAR 354
Query: 551 FL 552
L
Sbjct: 355 VL 356
>gi|323491712|ref|ZP_08096890.1| DNA helicase [Vibrio brasiliensis LMG 20546]
gi|323314074|gb|EGA67160.1| DNA helicase [Vibrio brasiliensis LMG 20546]
Length = 644
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 158/407 (38%), Positives = 226/407 (55%), Gaps = 17/407 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ ++G++S R GQ I+ VL KS + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 14 LKNIFGFESLRSGQQAVIEKVLQGKSCSAIFPTGSGKSLCYQLPAVMLPHLTLVVSPLLA 73
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SSQ E+ + ++ G IKVL +S ER N F F
Sbjct: 74 LMKDQLAFLNSKQIPAASIDSSQSREDTLHIMEQVRQGRIKVLMISVERLKNERFRQ-FI 132
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ +S++VVDEAHC+SEW HNFRP Y++L L L + L +TATAT + D+
Sbjct: 133 SQVPVSMLVVDEAHCISEWGHNFRPDYLKLPHYL--KELKIPQALLLTATATHAVIEDMQ 190
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI-LQISG 430
+ I +++ R NL +SVS ++ + + A ++ V S + Y+ LQ S
Sbjct: 191 TKFAIEREDVVVTGFYRSNLDISVSPCLDDEKPQ--ALLELVQSAPKLPTIVYVTLQNSA 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
D ++ L D+ I+V +YH+G+ R IQ F ++ +VAT+AFGMG+DK D
Sbjct: 249 -----DQVANLLRDSGINVSAYHAGMKNGQREHIQAQFMRGELDCIVATIAFGMGVDKSD 303
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D + +
Sbjct: 304 IRRVIHFDLPKSIENYAQEIGRAGRDGQPSQCVLLANQTGLSTLENFIYGDTPEPSEVEF 363
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
L Q + L LV ES R+ +K TLL LE+ I
Sbjct: 364 VLKQAVDSAPKWEVVLPRLVTESNVRQLPLK-----TLLVYLEMEGI 405
>gi|294940953|ref|XP_002782939.1| rothmund-thomson syndrome dna helicase recq4, putative [Perkinsus
marinus ATCC 50983]
gi|239895121|gb|EER14735.1| rothmund-thomson syndrome dna helicase recq4, putative [Perkinsus
marinus ATCC 50983]
Length = 1178
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 219/792 (27%), Positives = 343/792 (43%), Gaps = 174/792 (21%)
Query: 187 ENLGRLLRLVYGY-DSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----- 240
E L ++L +G+ D FR GQ EAI+ +L S ++VLPTG GKSL YQ A I
Sbjct: 372 EELQKMLNEEFGHCDGFRAGQQEAIEALLGGASCLVVLPTGQGKSLIYQFVARIYRKYLG 431
Query: 241 --PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298
G+T+VV PL++LM DQLR LP + G ++S+ P E+ + G I +L V+P
Sbjct: 432 DRGGVTVVVSPLISLMADQLRQLPSCVRGATINSTMTPYEMDAVLLGAAQGEIDLLLVAP 491
Query: 299 ERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAM 358
ER L S A ++LV +DEAHC+SEWSH+FRP+Y R+ ++R +L +LA+
Sbjct: 492 ERLL---MWSFQNALPFVNLVAIDEAHCISEWSHSFRPAYQRI-TGVIRRQLRPAHLLAL 547
Query: 359 TATATTTTLRDVMSAL-------------EIPLSNL----IQKAQ-----LRDNLQLSVS 396
TATAT+ T+ V+S L E L +L +++ + LR NL+LS S
Sbjct: 548 TATATSRTISSVISILGGIDITVRADGVVERTLGSLQTPEVEEQEEGSMVLRRNLRLSGS 607
Query: 397 LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGI 456
+ N Q+ + E+ I+ ++T+ ++R LC + +YH G+
Sbjct: 608 PTLNPLQS-----LLELLHTSEYRPLSSIIVYVAYQWQTEQVARLLCQRGVRAGAYHGGM 662
Query: 457 PAKDRSRIQELFC-------SNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQE 509
+ +R+ +QE F I+V+VATVAFGMG+DK DV AV+H +LP SLE YVQE
Sbjct: 663 SSIERNEVQEAFIRGGGQASGGGIQVIVATVAFGMGIDKSDVRAVVHMALPRSLESYVQE 722
Query: 510 IGRAGRDG-RLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVF---TNGMNSHGK 565
GR RDG CH+ + Y RLR ++SD +D ++ + ++ G N+ +
Sbjct: 723 TGRCCRDGYEFGLCHVLICHQDYARLRRAVFSDSLDPLSVGSLVGRILFGSHQGSNTTDR 782
Query: 566 L-----CSLVKES---------------ASRKFDIKEEVMLTLLTCLELGEIQYLQLLPE 605
L C+ V S +R+ D +E + LL LE +
Sbjct: 783 LEPFGSCTCVAASTDEAPFRFAFVDEKQGARELDCSKEQLTFLLGSLESAGQGVRAVFHG 842
Query: 606 LKVTCTLNFHKTTPTLLADKDKMVATILKKSET---------------------KQGQYV 644
L F P +A +D + +L E + G Y
Sbjct: 843 FPSKVKLRFFSKDPETVAREDPFIRALLAPEEALSTAEATEEGTEQAVTITVPCRTGVYT 902
Query: 645 FD----IPTVANSIGATTI---DVSNQLLNLKMRGEITYELKDPAYCYTIV---EVPSD- 693
D +PT+A + G +I D +L + + + E ++ YC+ I VPS+
Sbjct: 903 IDTRLALPTLAATSGYASITPPDFMRRLHDAQRKWHFAVEKQE--YCHVIAMGGRVPSEA 960
Query: 694 -----------------FCALSAHLTKWLSEVENCK--VRKL-------DRMFHAAVFAV 727
+ H L +V+ C +R++ D +F +
Sbjct: 961 NHDRESIPCVRRLAAALISQVRRHQDHQLVKVDACYLVLRRIAANDNGKDPLFGHRLIQN 1020
Query: 728 DVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSP----------------- 770
+ GC L + + R VP++ G ++
Sbjct: 1021 YFSLASEGCEEELLLSLADGDRAELRRVLGPAAVPHEQGDTTERTAREWECDENYSSDFN 1080
Query: 771 FLRADIKVFLQSNL---------------------NAKFTPRAVA------RILHGIASP 803
++R D++ L + ++ ++P A A RIL GI SP
Sbjct: 1081 WVRGDLEGLLSGGMVKALDPIVYANDTAEEPFWMEDSLWSPSAAATPTSIARILQGIPSP 1140
Query: 804 AYPSTIWSKTHF 815
YP+ W T +
Sbjct: 1141 TYPTKAWKDTPY 1152
>gi|398992444|ref|ZP_10695419.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM24]
gi|399015734|ref|ZP_10717996.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM16]
gi|398107995|gb|EJL97984.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM16]
gi|398130407|gb|EJM19747.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM24]
Length = 642
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 187/583 (32%), Positives = 285/583 (48%), Gaps = 40/583 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+G+ FR GQ AI VL +S + PTG+GKS+CYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGFPQFRPGQETAISAVLAGRSAAAIFPTGSGKSICYQLPALMLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLQRHGISAGSIDSAQSRDDANDVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQTLLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAADDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMAERPG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+ R IQ+ F + + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLERNGIQAEAYHAGLAHDKREAIQKRFMAGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPERDGIRY 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQ-YLQLLPEL 606
L ++ + + L L +S R +K TLL LEL G I E
Sbjct: 355 VLDELKASVPEGQWEFLLGPLADQSNIRSLPLK-----TLLVQLELRGLIAPRYAYYAEY 409
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ L ++ VA I++ S + + + + A V L
Sbjct: 410 RFKYLLEPEALLERFEGERRDFVAAIIQTSARARTWATVNFEAMYSQYSAERNRVVKALD 469
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
+ +G + E K Y+++ D ALSA L + + E +V ++ M VFA
Sbjct: 470 YFQEKGWVELESKQMTEVYSLLNSDFDSDALSAELHDYFTRHEQAEVARIHTMLE--VFA 527
Query: 727 VDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+ CL + +YF GD N P + G S
Sbjct: 528 SER--------------CLGYRLAEYF-GDHNA--PEQCGHCS 553
>gi|424033800|ref|ZP_17773211.1| ATP-dependent DNA helicase, RecQ family protein [Vibrio cholerae
HENC-01]
gi|408873913|gb|EKM13096.1| ATP-dependent DNA helicase, RecQ family protein [Vibrio cholerae
HENC-01]
Length = 641
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 194/637 (30%), Positives = 300/637 (47%), Gaps = 54/637 (8%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA LP LTLV+
Sbjct: 5 SLQQTLQSVFGFDSLRPGQQPVIEAVMNGHSAAAIFPTGSGKSLCYQLPATQLPHLTLVI 64
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQL L I + SSQ EE + + ++ G IK+L +S ER N F
Sbjct: 65 SPLLALMKDQLGFLQSKGIAAASIDSSQSREEAQQVMAGVKNGQIKILMISVERLKNERF 124
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
L SL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 125 REFIRQIPL-SLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQTLLLTATATPAV 181
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+ D+ + I N+ R NL +SV + +N+++ D + + + Y+
Sbjct: 182 IEDMQNKFNIAGENITVTGFYRPNLDISVVPC--DEENKQTQLNDIIAATPKLPSIVYVT 239
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
Q + ++ L I+ +YH+G+ + R +IQ+ F ++I +VAT+AFGMG+
Sbjct: 240 Q----QQTAEQVASSLIRLGINAHAYHAGMKSDIREKIQQQFMDSQIDCIVATIAFGMGV 295
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 296 DKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEPS 355
Query: 547 AINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPEL 606
+IN L Q+ N L ++S R+ +K TLL LEL ++ ++
Sbjct: 356 SINYVLEQIRENTPQWEVMALRLSRDSNIRQLPLK-----TLLVYLELAKV--IEAKYSY 408
Query: 607 KVTCTLNFHKTTPTLL----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F + +L ++ + V I S + D+ + + + V
Sbjct: 409 FAEYRFKFLQEQSFILNQFQGERRQFVEAIFACSTKAKVWCQVDLEALWMNYQSERSRVV 468
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L G I E K Y+++ A+S HL + E+ + ++ M
Sbjct: 469 AALDYFHQNGWIELESKQLTDVYSVLPATQSQEAISQHLIELFQSKEHKDIERIHTML-- 526
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD------NCDV----------PNKIG 766
++F + CL + YF D +C V P +
Sbjct: 527 SLFQ--------------SSDCLSHQLAQYFADHDAPTQCGHCSVCRGQVASFPQPQQTQ 572
Query: 767 QSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASP 803
L + F+Q + A + AVAR L GI++P
Sbjct: 573 PELAHLSTWVDEFVQLSPTA-ISNAAVARFLCGISTP 608
>gi|430745409|ref|YP_007204538.1| RecQ familyATP-dependent DNA helicase [Singulisphaera acidiphila
DSM 18658]
gi|430017129|gb|AGA28843.1| ATP-dependent DNA helicase, RecQ family [Singulisphaera acidiphila
DSM 18658]
Length = 642
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 168/493 (34%), Positives = 266/493 (53%), Gaps = 21/493 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R LR +G+ FR GQ +AI +L+ + + V PTGAGKSLCYQ+PA++L GLT+VV PL
Sbjct: 9 RTLRETFGFTQFRGGQEQAITALLEGRPVLAVFPTGAGKSLCYQLPALLLDGLTVVVSPL 68
Query: 251 VALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
+ALM DQ+ L + L S+ P E + ++ +K+L+V+PER + F
Sbjct: 69 IALMKDQVDFLVRRGVAAARLDSTLEPVEARRILDDLRADRLKLLYVAPERLASERFFQT 128
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ T ++L+ VDEAHC+SEW HNFRP Y++L A L R RL + +LA+TATAT
Sbjct: 129 LSKTK-VALLAVDEAHCISEWGHNFRPEYLKL-ARLAR-RLGIARVLALTATATPDVASQ 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
V A I ++++ R NL+L + +R A + + S I+ ++
Sbjct: 186 VARAFGIADADVVITGFHRPNLELHANACA---AEDRHALL--LKSLKAGLAGPTIVYVT 240
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ DL + +L +YH+G+ + R +Q+ F + + +VVAT+AFGMG+DK
Sbjct: 241 LQKTAEDL-ADFLAGQGFDAMAYHAGMNDERRHVVQDQFMACEAGIVVATIAFGMGIDKS 299
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
++ AV H++LP+SLE + QEIGRAGRDG + C LF L + Y D AI
Sbjct: 300 NIRAVYHFNLPKSLENFAQEIGRAGRDGEPARCELFACAEDVLTLGNFTYGDTPTPEAIA 359
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVT 609
L ++ G+ G + S++ DI++ V+ TL+T LEL I L+
Sbjct: 360 DLLKEIL--GL---GPTFDISAYDLSQRHDIRQLVVQTLMTYLELEGI--LEATGPFYSD 412
Query: 610 CTLNFHKTTPTLLADKDKMVATILKK--SETKQGQ--YVFDIPTVANSIGATTIDVSNQL 665
C +++ +LA D A L++ + + G+ + D+ VA ++ T +S L
Sbjct: 413 CKFRPLRSSGEILAQYDAPRAAFLRQVFRQARPGKIWFALDVSEVARNLEETRERISAAL 472
Query: 666 LNLKMRGEITYEL 678
+L+ +G++ +L
Sbjct: 473 NHLEEKGDVELQL 485
>gi|145299254|ref|YP_001142095.1| ATP-dependent DNA helicase RecQ [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357387|ref|ZP_12960085.1| ATP-dependent DNA helicase RecQ [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142852026|gb|ABO90347.1| ATP-dependent DNA helicase RecQ [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689348|gb|EHI53888.1| ATP-dependent DNA helicase RecQ [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 641
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 202/635 (31%), Positives = 291/635 (45%), Gaps = 58/635 (9%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +G+D R GQ I +L +S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+
Sbjct: 5 LLTRHFGFDQLRPGQETVISRLLAGQSAAAIFPTGSGKSLCYQLPALALPHLTLVISPLI 64
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I L SSQ PEE ++ G +K+L +S ER N F
Sbjct: 65 ALMHDQLAFLHSKGIPAATLDSSQTPEESRRVMQQASDGQLKILMISVERLKNERFRRFI 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++VVDEAHC+SEW HNFRP Y++L A R L + +L +TATAT + D+
Sbjct: 125 QQVPL-SMLVVDEAHCISEWGHNFRPDYLKLPA--YRRELKIPQVLLLTATATPAVMADM 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ +I LI R NL L+V R N A V + + Y LQ +
Sbjct: 182 QAKFDIEDEGLIVTGFYRANLDLAVVPQPAEARDNWLQAEVRREPT--APTIVYVTLQHT 239
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+H DL+ R I ++YH+G+ + RS+IQ F + K+ +VAT+AFGMG+DK
Sbjct: 240 AQHC-ADLLQR----AGIRARAYHAGLDSALRSQIQHDFMAGKVDCIVATIAFGMGIDKA 294
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
D+ VIHY LP+S+E Y QEIGRAGRDG S C + + L + +Y D D AI
Sbjct: 295 DIRRVIHYDLPKSIENYSQEIGRAGRDGLPSRCIVLANRAQLPVLENFVYGDTPDRAAIV 354
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELK 607
L + +G L L ++ R+ +K TLL LE+ I E +
Sbjct: 355 ALLEILSQSGSEWEFGLLRLSNDTNIRQLPLK-----TLLVYLEMAGIIMPAYSYFAEYR 409
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
L+ + D+ + + + + + D + + L
Sbjct: 410 FKFVLDKAEILTRFNPDRRQFLEQLFACASQARSWCTMDFDALWQGYQGERHRAAAALDY 469
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAV 727
L+ +G I E K Y ++ D AL+ L + E ++ +L + A F
Sbjct: 470 LQQQGWIELESKQMTDVYRVLRQDVDINALADELYALFEKKELSELARLQALL--AFFT- 526
Query: 728 DVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFL------- 780
+H CL + + YF N P+K G S R ++ V
Sbjct: 527 ----SSH---------CLSQELARYF---ANEQAPSKCGHCS-VCRGEVAVLPPLPTLTL 569
Query: 781 --QSNLNAKFT----------PRAVARILHGIASP 803
++ L A PR + R L GIA+P
Sbjct: 570 PNENGLRAWCDPLIALCHTRHPRILTRFLCGIATP 604
>gi|424047472|ref|ZP_17785031.1| ATP-dependent DNA helicase, RecQ family protein [Vibrio cholerae
HENC-03]
gi|408883965|gb|EKM22728.1| ATP-dependent DNA helicase, RecQ family protein [Vibrio cholerae
HENC-03]
Length = 641
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/412 (37%), Positives = 227/412 (55%), Gaps = 15/412 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA LP LTLV
Sbjct: 4 DSLQQTLQSVFGFDSLRPGQQPVIEAVMNGHSAAAIFPTGSGKSLCYQLPATQLPHLTLV 63
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQL L I + SSQ EE + + ++ G IK+L +S ER N
Sbjct: 64 ISPLLALMKDQLSFLQGRGIAAASIDSSQSREETQQVMAGVKNGHIKILMISVERLKNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F L SL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 124 FREFIRQIPL-SLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQTLLLTATATPA 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D+ S +I N+ R NL +SV +N+ + D + + + Y+
Sbjct: 181 VIEDMQSKFDIAGENITVTGFYRSNLDISVLPC--EEENKLTQLSDIIAAAPKLPSIVYV 238
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
Q + ++ L I+ +YH+G+ + R +IQ+ F ++I +VAT+AFGMG
Sbjct: 239 TQ----QQTAEQVANSLIRLGINAHAYHAGMKSDIREKIQQQFMDSQIDCIVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 295 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEP 354
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
+IN L Q+ N L ++S R+ +K TLL LEL ++
Sbjct: 355 SSINYVLEQIRENTPQWEVMALRLSRDSNIRQLPLK-----TLLVYLELAKV 401
>gi|70733795|ref|YP_257435.1| ATP-dependent DNA helicase RecQ [Pseudomonas protegens Pf-5]
gi|68348094|gb|AAY95700.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas protegens
Pf-5]
Length = 644
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 174/544 (31%), Positives = 271/544 (49%), Gaps = 23/544 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ A+ VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRLGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q +E E + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLQRHGIAAASIDSAQGRDEANEVMARARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFNIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ + + S Y LQ +
Sbjct: 182 AKFAIAQQDVVTTGFYRPNLNLLVEPVRGADKRRRLVQWMSDRAG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L I+ ++YH+G+P + R IQ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLSQQGIAAEAYHAGLPHEQRESIQRRFMEGRSHCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELSGIRC 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQ-YLQLLPEL 606
L ++ + + + L L +S R+ +K TLL LEL G I E
Sbjct: 355 VLEELQASAADGQWEFLLGPLADQSNIRQLPLK-----TLLVQLELRGLIAPRYAYFAEY 409
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ L ++ V ++ S + + + A V L
Sbjct: 410 RFKLLLETEALLARFEGERRDFVEAVINTSSRARTWATVNFDALYEQYQAPRNRVVKALD 469
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
+ +G + E K Y++++ D ALSA L + + E ++ ++ M +FA
Sbjct: 470 YFQEKGWVELESKQMTEVYSLLQTDFDLAALSADLHGYFTRHEGSEIARIHAMLD--LFA 527
Query: 727 VDVC 730
+ C
Sbjct: 528 TEQC 531
>gi|398851299|ref|ZP_10607985.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM80]
gi|398246808|gb|EJN32282.1| ATP-dependent DNA helicase, RecQ family [Pseudomonas sp. GM80]
Length = 642
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 178/544 (32%), Positives = 269/544 (49%), Gaps = 23/544 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ I VL +S + PTG+GKSLCYQI A++LP LTLVV PL+A
Sbjct: 5 LEQVFGYPQFRPGQEATISAVLAGRSAAAIFPTGSGKSLCYQISALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q E+ + + + G +K+L +S ER N F + F
Sbjct: 65 LMQDQLAFLQRHGISAGSIDSAQSREDANDVMERARSGELKILMISVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 124 QQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQTLLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V + G +++ ++ E + S Y LQ +
Sbjct: 182 AKFAIAPDDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSERPG--QPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H I+ +L N I ++YH+G+P R IQ+ F + + +VAT+AFGMG+DK D
Sbjct: 240 EH-----IAEHLERNGIQAEAYHAGLPHDKREAIQKRFMAGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEREGIRY 354
Query: 551 FLCQVFTNGMNSHGK--LCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQ-YLQLLPEL 606
L ++ + + + L L +S R +K TLL LEL G I E
Sbjct: 355 VLDELKASVPDGQWEFLLGPLADQSNIRSLPLK-----TLLVQLELRGLIAPRYAYYAEY 409
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ L ++ VA I++ S + ++ A V L
Sbjct: 410 RFKYLLEPEALLERFEGERRDFVAAIIQTSSRARTWATVSFESMYEQYSAERNRVVMALD 469
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
+ +G + E K Y+++ D L L + + E +V ++ M VFA
Sbjct: 470 YFQEKGWVELESKQMTEVYSVLRSDFDSDVLGGELHDYFTRHEQTEVARIHAMLE--VFA 527
Query: 727 VDVC 730
+ C
Sbjct: 528 TERC 531
>gi|281492402|ref|YP_003354382.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. lactis
KF147]
gi|281376066|gb|ADA65557.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. lactis
KF147]
Length = 592
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/356 (40%), Positives = 218/356 (61%), Gaps = 11/356 (3%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ ++GYD+FR+GQ + I+ VLD ++T+ +LPTGAGKS+CYQ+PA+I PGLTLV+
Sbjct: 2 NLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVI 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I F++S+ E + +R ++ G IK+LFV+PERF + D+
Sbjct: 62 SPLISLMKDQVDQLNIAGIPATFINSTLEDSESYQRMRQVENGEIKLLFVAPERF-SLDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ F I LV +DEAHC+S+W H+FRPSY+ AS L+ +LA+TATAT
Sbjct: 121 FNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDF-ASHLQYLPTNPTVLALTATATPKV 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D+ L I S+ I+ LR+NL+ V + G +++ Y+ ++ S+ I+
Sbjct: 180 ADDIQKLLSISPSHTIKTGFLRENLRFEV-VKGMDKRTFLKNYLK-----NQESEAAGII 233
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
S + E + I +L N YH+G+ ++R QELF +++ ++VAT AFGMG+
Sbjct: 234 YASTRK-EVEEICEWLNHNHFKAVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGI 292
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
+K +V VIHY+LP ++E Y QE GRAGRDG L + L R+R+ + G
Sbjct: 293 NKPNVRFVIHYALPATIESYYQEAGRAGRDG-LESDAILLFSPNDLRIRNFLIEQG 347
>gi|269960571|ref|ZP_06174943.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834648|gb|EEZ88735.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 641
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 155/412 (37%), Positives = 226/412 (54%), Gaps = 15/412 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA LP LTLV
Sbjct: 4 DSLQQTLQSVFGFDSLRPGQQPVIEAVMNGHSAAAIFPTGSGKSLCYQLPATQLPHLTLV 63
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQL L I + SSQ EE + + ++ G IK+L +S ER N
Sbjct: 64 ISPLLALMKDQLSFLQGRGIAAASIDSSQSREETQQVMAGVKNGHIKILMISVERLKNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F L SL+VVDEAHC+SEW HNFRP Y L+ + LN+ L +TATAT
Sbjct: 124 FREFIRQIPL-SLMVVDEAHCISEWGHNFRPDY--LKVPQYQRELNIPQTLLLTATATPA 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D+ S +I N+ R NL +SV +N+ + D + + + Y+
Sbjct: 181 VIEDMQSKFDIAGENITVTGFYRSNLDISVL--PYEEENKLTQLSDIIAAAPKLPSIVYV 238
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
Q + ++ L I+ +YH+G+ + R +IQ+ F ++I +VAT+AFGMG
Sbjct: 239 TQ----QQTAEQVANSLIRLGINAHAYHAGMKSDIREKIQQQFMDSQIDCIVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 295 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEP 354
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
+IN L Q+ N L ++S R+ +K TLL LEL ++
Sbjct: 355 SSINYVLEQIRENTPQWEVMALRLSRDSNIRQLPLK-----TLLVYLELAKV 401
>gi|88860543|ref|ZP_01135181.1| putative helicase (recQ-like) protein [Pseudoalteromonas tunicata
D2]
gi|88817741|gb|EAR27558.1| putative helicase (recQ-like) protein [Pseudoalteromonas tunicata
D2]
Length = 648
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 197/637 (30%), Positives = 304/637 (47%), Gaps = 62/637 (9%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G++ FR GQ E I +L ++S + + PTG+GKSLCYQ+ A++LP LTLVV PL+ALM D
Sbjct: 12 FGFNEFRQGQFETISTLLAQRSALAIFPTGSGKSLCYQLSALLLPHLTLVVSPLIALMHD 71
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
QL L + L S+ +E + + +Q G IK+L VS ERF N F F A
Sbjct: 72 QLHFLQSKGVAAASLDSTLNADESRDVMAKVQKGEIKILMVSVERFKNERFRQ-FLAGLK 130
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
IS++VVDEAHC+SEW HNFRP Y++L R +L + +L +TATAT D+
Sbjct: 131 ISMLVVDEAHCISEWGHNFRPDYLKLPQ--YREQLAIPLVLLLTATATKKVKLDMAKRFA 188
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++IQ R NL LSV +N + ++++ + Y LQ +
Sbjct: 189 IEPTDIIQTGFYRQNLALSVLPVLEYAKN--TVLIEQIRQQRGAGIVYVTLQKTAME--- 243
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+++ L +++ +YH+G+ + R I F +NKI VVVAT+AFGMG+DK ++ VI
Sbjct: 244 --VAQLLQSANVNAVAYHAGLDDEVRGHILRDFMANKIDVVVATIAFGMGVDKANIRFVI 301
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVDEYAINKFLC 553
HY LP+S+E Y QEIGRAGRDG+ S C LD I + + +Y D + +I K +
Sbjct: 302 HYDLPKSIENYSQEIGRAGRDGQSSQCITLANLDGINV--VENFVYGDTPEPDSIAKLIE 359
Query: 554 QVFTNGMNSHGKLCS--LVKESASRKFDIKEEVMLTLLTCLELGEI---QYLQLLPELKV 608
+ T + +L L E+ R +K TLL LEL + +Y + K
Sbjct: 360 LLKTTTIQGVWELQDNPLASETNIRLLPLK-----TLLVQLELKGVITAKY-SYFADFKY 413
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
+ + ++ + IL ++ K+ D + N V N L L
Sbjct: 414 KLLVEKQQLLNQFDPERQAFLVMILSYTQFKKVWGTLDFVQLLNEPNIERERVVNALDYL 473
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVD 728
+ I E K + Y + + L L ++ +E E +++++ + F +D
Sbjct: 474 HQQQLIELETKKITHVYQVNQQALADPNLVNELIRYFNEKEQAEIKRIAALVR--FFQLD 531
Query: 729 VCEKTHGCNGSLHTPCLQKNILDYF---RGDDNCD--------VPNKIGQSSPFLRAD-- 775
CL N+ YF + C+ V S P L D
Sbjct: 532 --------------KCLSANLARYFDDQQAPAQCNTCSVCLGSVATLAYSSHPELPNDDI 577
Query: 776 -------IKVFLQSNLNAKFTPRAVARILHGIASPAY 805
+K +S +N + ++ AR L GI +P +
Sbjct: 578 LIRYLHELKQLCKSKVNQPLSDKSYARFLAGITTPLF 614
>gi|71281299|ref|YP_270887.1| RecQ domain-containing protein [Colwellia psychrerythraea 34H]
gi|71147039|gb|AAZ27512.1| RecQ domain protein [Colwellia psychrerythraea 34H]
Length = 690
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 164/429 (38%), Positives = 244/429 (56%), Gaps = 24/429 (5%)
Query: 181 RDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL 240
+D + E L L +G+D FR GQ + I +L +S++ + PTG+GKSLCYQ+ A+ L
Sbjct: 5 QDYSHKECLKASLLETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHL 64
Query: 241 PGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
P LTLVV PL+ALM DQL L I + S+ + E + ++ G IKVL VS E
Sbjct: 65 PHLTLVVSPLLALMKDQLSFLASKGIKAASIDSTLKGNEAQTVMAGVRDGDIKVLMVSVE 124
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
RF N F F + +S++VVDEAHC+SEW HNFRP Y++L S +A LN+ +L +T
Sbjct: 125 RFKNERFRQ-FIESVPVSMLVVDEAHCISEWGHNFRPDYLKL-PSYCQA-LNISLVLLLT 181
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATAT +D+ + I +++Q R NL LSV +N++ ++++ S +
Sbjct: 182 ATATRKVKQDMAAKFAIRDEHIVQTGFYRSNLDLSVLPVTQAHKNKQ---LEQIISAQQG 238
Query: 420 SKHYYI-LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
+ Y+ LQ S + +++YL I+ +YH+G + RS+IQ+ F + KI+V+VA
Sbjct: 239 AGIVYVTLQHSA-----ETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVA 293
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
T+AFGMG+DK ++ VIHY LP+S+E Y QEIGRAGRDG S C + + + +
Sbjct: 294 TIAFGMGIDKSNIRFVIHYDLPKSIENYSQEIGRAGRDGLPSQCFTLANLDGLNTVENFV 353
Query: 539 YSDGVD----EYAINKFLCQVFTN---GMN---SHGKLCSLVKESASRKFDIKEEVMLTL 588
Y D + E +N +V T+ G++ S GK L S +IK+ + TL
Sbjct: 354 YGDTPEFTGIEMLLNTIKSEVITSTHVGISDNRSEGKW-ELQILQLSNAVNIKQLPLKTL 412
Query: 589 LTCLELGEI 597
L LEL +
Sbjct: 413 LVQLELAGV 421
>gi|347751808|ref|YP_004859373.1| ATP-dependent DNA helicase RecQ [Bacillus coagulans 36D1]
gi|347584326|gb|AEP00593.1| ATP-dependent DNA helicase RecQ [Bacillus coagulans 36D1]
Length = 724
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 198/338 (58%), Gaps = 13/338 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ YGYD FR GQ I ++D K T+ ++PTG GKS+CYQ+PAM+LPG+TLV+ PL
Sbjct: 9 QVLKQYYGYDHFRRGQEAIISQIMDGKDTLGMMPTGGGKSVCYQVPAMLLPGVTLVISPL 68
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +++SS P E+ E + GA K+++++PER + FL +
Sbjct: 69 ISLMKDQVDTLENIGIPATYVNSSLNPAEIDERLAAASTGAYKLIYLAPERLEFSPFLHL 128
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ +SL+ VDEAHC+S+W H+FRPSY RL L+ LA+TATAT D
Sbjct: 129 LENIN-VSLIAVDEAHCISQWGHDFRPSY-RLIEKLISQFKPKPVTLALTATATPQVKED 186
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV-DEVFSFHRSSKHYYILQI 428
+ L IP N + R+NL V + G NR A+V D + S Y
Sbjct: 187 ICRLLMIPEENTVATGFARENLHFQV-VKGQNR----DAFVLDYILKNANQSGILY---- 237
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ ET+ I +L N I YH+G+ +R Q+ F + I V+VAT AFGMG+DK
Sbjct: 238 TATRKETERIYNFLVKNGIRAGKYHAGMKEAERDSFQDRFLYDDISVMVATSAFGMGIDK 297
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+V VIHY+LP+++E Y QE GRAGRDG S C L
Sbjct: 298 SNVRFVIHYNLPKNMEAYYQEAGRAGRDGEESDCILLF 335
>gi|315123081|ref|YP_004065087.1| putative helicase (recQ-like) [Pseudoalteromonas sp. SM9913]
gi|315016841|gb|ADT70178.1| putative helicase (recQ-like) [Pseudoalteromonas sp. SM9913]
Length = 646
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 189/591 (31%), Positives = 291/591 (49%), Gaps = 67/591 (11%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G++ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 13 FGFNQFRTGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPHLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G +KVL VS ERF N F + +L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRSGKVKVLMVSVERFKNERFREFISQVAL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMAERFA 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKH----YYILQISG 430
I ++Q R NL L+V S+ ++ NE + V R+ Y LQ S
Sbjct: 190 IEPQCIVQTGFYRANLDLNVLSVKTADKNNELTKIV-------RAQTGPGIVYVTLQQSA 242
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ L + +YH+G+ R +IQ+ F + KI VVVAT+AFGMG+DK D
Sbjct: 243 EQ-----VANMLSAQGLHAVAYHAGLEDTLRGQIQDDFMAGKINVVVATIAFGMGVDKSD 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD----EY 546
+ VIHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D + EY
Sbjct: 298 IRFVIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFIYGDTPELSGIEY 357
Query: 547 AINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEI--QYLQLL 603
IN + + + + S S + +I++ + TLL LE+ G I QY
Sbjct: 358 VIND---------IRQAQQQWEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQY-AYY 407
Query: 604 PELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQ--GQYVFDIPTVANSIGATTIDV 661
+ K ++ ++ + + I ++ K+ G FD T A + +
Sbjct: 408 ADFKYKFLVDKNELLSQFDEQRQAFLKQIFSHTDFKKIWGTLNFDSLTQAAQVDRKRVVA 467
Query: 662 SNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRK---LDR 718
+ L L + IT E K + Y + + AL+ L + ++ E ++++ L R
Sbjct: 468 A--LDYLAEKNLITLETKRITHVYKVHSEVINNPALAQQLHDYFTDKEQAEIKRIAALVR 525
Query: 719 MFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
F CL N+ YF D+ + P + G S
Sbjct: 526 FFEL-------------------QSCLSYNLARYF---DDANAPQQCGHCS 554
>gi|334705126|ref|ZP_08520992.1| DNA helicase [Aeromonas caviae Ae398]
Length = 640
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 199/635 (31%), Positives = 287/635 (45%), Gaps = 58/635 (9%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +G+D R GQ I +L KS + PTGAGKSLCYQ+PA+ LP LTLV+ PL+
Sbjct: 5 LLTRHFGFDRLRPGQEAVISRLLAGKSAAAIFPTGAGKSLCYQLPALALPHLTLVISPLL 64
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I L SSQ EE ++ G +K+L +S ER N F F
Sbjct: 65 ALMHDQLAFLRSKGIAAATLDSSQTAEESRRVMQQASDGQLKILMISVERLKNERFRR-F 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
A +SL+VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT + D+
Sbjct: 124 IAHIPLSLLVVDEAHCISEWGHNFRPDYLKLPDH--RRELAIPQVLLLTATATPAVMADM 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ I +L+ R NL L+V L+G+ R ++ E HR I+ ++
Sbjct: 182 QAKFAIDRDDLVVTGFYRPNLDLAVLPLAGSARDT----WLRE--ELHRDPAAPTIVYVT 235
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+H + + L + I +YH+G+ RS+IQ F + ++ +VAT+AFGMG+DK
Sbjct: 236 LQH-SAEQCAAQLQASGIRACAYHAGLDPALRSQIQHDFMAGRLDCIVATIAFGMGIDKA 294
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
D+ VIHY LP+S+E Y QEIGRAGRDG S C + L + +Y D D AI
Sbjct: 295 DIRRVIHYDLPKSIENYSQEIGRAGRDGLPSRCTVLASRAQLPVLENFVYGDTPDRDAIA 354
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELK 607
L V +G L L E+ R+ +K TLL LE+ + E +
Sbjct: 355 HLLDIVRQSGAEWEFSLLRLSNETNIRQLPLK-----TLLVYLEMAGVIAPAYSYFAEYR 409
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
L +++ + + + + + D + + L
Sbjct: 410 FRFVLEKQAILARFNSERRQFLEQVFACAPQARTWCTMDFEALWQGYQGERQRAATALDY 469
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAV 727
L+ +G I E K Y ++ D L+ L + E ++ +L + A F
Sbjct: 470 LQQQGWIELESKQMTEVYRVLSQQIDTATLAEELHGLFEKKEQSELARLQALL--AFFT- 526
Query: 728 DVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFL------- 780
T CL + YF D P + G S R +I V
Sbjct: 527 -------------STTCLSHELARYFADD---AAPERCGHCS-VCRGEIAVLPPLASPGL 569
Query: 781 --QSNLNA----------KFTPRAVARILHGIASP 803
+ L A + PR + R L GIA+P
Sbjct: 570 PNEHGLRAWCDPLIALCHQRHPRILTRFLCGIATP 604
>gi|114047525|ref|YP_738075.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
gi|113888967|gb|ABI43018.1| ATP-dependent DNA helicase, RecQ family [Shewanella sp. MR-7]
Length = 665
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 191/589 (32%), Positives = 290/589 (49%), Gaps = 51/589 (8%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+D FR GQ E + +L S++ + PTG+GKSLCYQ A+ LP LTLVV PL+
Sbjct: 24 LLQQQFGFDGFRQGQHEVVSQLLSGHSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPLL 83
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
AL+ DQL L I + S+ PE + +R + G +K+L VS ERF N F F
Sbjct: 84 ALIKDQLSFLHEKGIKAASIDSTLTPELTQQVMRDARSGELKLLMVSVERFKNERFRQ-F 142
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ IS++VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT D+
Sbjct: 143 IQSIPISMLVVDEAHCISEWGHNFRPDYLKLPD--YRRELAIPLVLLLTATATRKVKLDM 200
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ +I +++Q R NL L+V + Q++ +A ++ F + Y LQ
Sbjct: 201 AARFDIKPQHIVQTGFYRSNLDLTVLPVAS--QHKLTALQQQLNHFTGAGIVYVTLQ--- 255
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
H D+ ++ LC +YH+G + R +IQ+ F KIR+VVAT+AFGMG+DK +
Sbjct: 256 -HTAEDVAAK-LCQMGFDASAYHAGFEDEKRQQIQQDFMQGKIRIVVATIAFGMGIDKSN 313
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVDEYAI 548
+ V+HY LP+S+E Y QEIGRAGRDG+LS+C LD I + + +Y D + +I
Sbjct: 314 IRFVVHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLDGIN--TVENFVYGDTPELASI 371
Query: 549 NKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
+ + +H L S +I++ + TLL LE+ I ++ L
Sbjct: 372 TAVIDNIRE---ETHNGRWELQLHQLSNVSNIRQLPLKTLLVQLEM--IGVIKPLYAYYA 426
Query: 609 TCTLNFHKTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
+ F + +L+ ++ + I ++ K+ D + + GA V
Sbjct: 427 DISYRFIEPQAQILSQFSPERQAFLNDIFTHTQMKRVWGSLDFSALYQATGAERTRVLAA 486
Query: 665 LLNLKMRGEITYELKDPAYCYTI-VEVPSDFCALSAHLTKWLSEVEN---CKVRKLDRMF 720
L L + I E K Y + EV + L+ L ++ ++ E ++ +L R F
Sbjct: 487 LEYLASQQLIELEAKRVTDVYQVNAEVLAQ-GHLADELHQYFTDKEAKEVARIAQLVRFF 545
Query: 721 HAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
T CL N+ YF DDN P G S
Sbjct: 546 EL-------------------TTCLNYNLARYF--DDNA-APQSCGHCS 572
>gi|417319157|ref|ZP_12105715.1| putative ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus
10329]
gi|328474347|gb|EGF45152.1| putative ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus
10329]
Length = 641
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 191/636 (30%), Positives = 303/636 (47%), Gaps = 52/636 (8%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
L + L+ V+G+DS R GQ I+ V+D S + PTG+GKSLCYQ+PA +LP LTLV+
Sbjct: 5 QLLQTLQSVFGFDSLRQGQQPVIESVMDGYSAAAIFPTGSGKSLCYQLPATMLPNLTLVI 64
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQL L I + SSQ EE + ++ G IK+L +S ER N F
Sbjct: 65 SPLLALMKDQLSFLQSKGIAAASIDSSQSREEAQRVMVGVKNGEIKILMISVERLKNERF 124
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
F ISL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 125 RE-FIRQVPISLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQTLLLTATATPAV 181
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+ D+ + +I ++ R NL +SV ++E+ ++ + + + K I+
Sbjct: 182 IEDMKNKFDIASDHITVTGFYRSNLDISVIPC---EESEKQTQLNTIVA--AAPKLPTIV 236
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
++ + + +++ L ++ +YH+G+ ++ R +IQ+ F + +I +VAT+AFGMG+
Sbjct: 237 YVTQQQ-TAEQVAKSLIHIGVNAHAYHAGMKSEVREQIQQQFMAGQIDCIVATIAFGMGV 295
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + ++ D +
Sbjct: 296 DKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVFGDTPERS 355
Query: 547 AINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLP 604
+I+ L Q+ H +V SR+ +I++ + TLL LEL ++
Sbjct: 356 SISYVLGQI-----KEHQPQWEVVPLRLSRESNIRQLPLKTLLVYLELAKVIEAKFSYFA 410
Query: 605 ELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
E + N ++ + V I S + D+ + + V
Sbjct: 411 EYRFKFLQNQQFIVNQFQGERREFVEAIFTCSTKAKVWCQVDLDALWMHYHSERSRVVAA 470
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L G + E K Y+++ + ++ HL + E + +DR+
Sbjct: 471 LDYFHQNGWVELESKQLTDVYSVLPDTQNIEDITQHLYELFQSKER---KDIDRI----- 522
Query: 725 FAVDVCEKTHGCNGSLHTP-CLQKNILDYF---------------RGDDNCDVPNKIGQS 768
H G + CL + YF RG P Q
Sbjct: 523 ---------HAMLGLFQSSDCLSHQLASYFADHNAPAHCGHCSVCRGQRAVFPPRIYDQP 573
Query: 769 SPFL-RADIKVFLQSNLNAKFTPRAVARILHGIASP 803
P + A I F+Q + +A + A+AR L GI++P
Sbjct: 574 EPAVASAWIAEFVQLSPSA-ISNEAIARFLCGISTP 608
>gi|89899221|ref|YP_521692.1| ATP-dependent DNA helicase RecQ [Rhodoferax ferrireducens T118]
gi|89343958|gb|ABD68161.1| ATP-dependent DNA helicase RecQ [Rhodoferax ferrireducens T118]
Length = 653
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 173/548 (31%), Positives = 269/548 (49%), Gaps = 23/548 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+GY FR GQ I VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LESVFGYPQFRPGQEAVISAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
LM DQL +L HG + S+Q E+ + + G +K+L +S ER N F +
Sbjct: 65 LMQDQLAYL--TRHGIAAASIDSAQSREQTQSVMAQARTGQLKILMISVERLKNERFRN- 121
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F A ISL+VVDEAHC+SEW HNFRP Y++L + + + L +TATAT + D
Sbjct: 122 FIAQVPISLLVVDEAHCISEWGHNFRPDYLKL--PHYQRQFGIPQTLLLTATATPPVVAD 179
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+ + I +++ R NL L V ++SG ++ ++ ++ + Y LQ
Sbjct: 180 MQTRFAIAAHDVVTTGFYRPNLHLLVEAVSGRDKLQRLLEWLS--MRANQPTIVYVTLQK 237
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + ++R+L + + +YH+G+P + R IQ+ F + ++ +VA +AFGMG+DK
Sbjct: 238 TAEQ-----VARHLSQHGLGAHAYHAGMPHEQRESIQKQFMAGRLNCIVAAIAFGMGIDK 292
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
D+ V+H+ LP+S+E Y QEIGRAGRDG S C + + L + +Y D + I
Sbjct: 293 SDIRNVVHFDLPKSIEGYSQEIGRAGRDGLPSDCLALANRDSLQVLENFVYGDTPEAGGI 352
Query: 549 NKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPEL 606
L ++ + K L + S + +I+ + TLL LEL I E
Sbjct: 353 RCVLDEILA---VAPAKPWELSLNALSEQSNIRLLPLKTLLVQLELRGIIASRYAYFAEY 409
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ + ++ + V IL+ + + D + + A V L
Sbjct: 410 RFKYLMEPEALLAHFKGERQQFVQAILRCARPARTWCTLDFEALYQTCQAEHSRVVTALD 469
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFA 726
L +G I E K Y ++ D LS L + E ++ ++ M A FA
Sbjct: 470 YLAAQGWIELEAKQMTEVYAVLAPGFDAQTLSLELLAYFQAKERSEIARIHAML--AFFA 527
Query: 727 VDVCEKTH 734
+ C H
Sbjct: 528 GEQCLSQH 535
>gi|385831289|ref|YP_005869102.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. lactis
CV56]
gi|326407297|gb|ADZ64368.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. lactis
CV56]
Length = 592
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 212/340 (62%), Gaps = 10/340 (2%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ ++GYD+FR+GQ + I+ VLD ++T+ +LPTGAGKS+CYQ+PA+I PGLTLV+
Sbjct: 2 NLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVI 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I F++S+ E + +R ++ G IK+LFV+PERF + D+
Sbjct: 62 SPLISLMKDQVDQLNIAGIPATFINSTLEDSESYQRMRQVENGEIKLLFVAPERF-SLDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ F I LV +DEAHC+S+W H+FRPSY+ AS L+ +LA+TATAT
Sbjct: 121 FNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDF-ASHLQYLPTNPTVLALTATATPKV 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D+ L I S+ I+ LR+NL+ V + G +++ Y+ ++ S+ I+
Sbjct: 180 ADDIQKLLSISPSHTIKTGFLRENLRFEV-VKGMDKRTFLKNYLK-----NQESEAAGII 233
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
S + E + I +L N YH+G+ ++R QELF +++ ++VAT AFGMG+
Sbjct: 234 YASTRK-EVEEICEWLNHNHFKSVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGI 292
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+K +V VIHY+LP ++E Y QE GRAGRDG S +L
Sbjct: 293 NKPNVRFVIHYALPATIESYYQEAGRAGRDGLESDANLLF 332
>gi|15673790|ref|NP_267965.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. lactis
Il1403]
gi|12724835|gb|AAK05906.1|AE006411_1 ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. lactis
Il1403]
Length = 592
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 212/340 (62%), Gaps = 10/340 (2%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ ++GYD+FR+GQ + I+ VLD ++T+ +LPTGAGKS+CYQ+PA+I PGLTLV+
Sbjct: 2 NLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVI 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I F++S+ E + +R ++ G IK+LFV+PERF + D+
Sbjct: 62 SPLISLMKDQVDQLNIAGIPATFINSTLEDSESYQRMRQVENGEIKLLFVAPERF-SLDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ F I LV +DEAHC+S+W H+FRPSY+ AS L+ +LA+TATAT
Sbjct: 121 FNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDF-ASHLQYLPTNPTVLALTATATPKV 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D+ L I S+ I+ LR+NL+ V + G +++ Y+ ++ S+ I+
Sbjct: 180 ADDIQKLLSISPSHTIKTGFLRENLRFEV-VKGMDKRTFLKNYLK-----NQESEAAGII 233
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
S + E + I +L N YH+G+ ++R QELF +++ ++VAT AFGMG+
Sbjct: 234 YASTRK-EVEEICEWLNHNHFKSVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGI 292
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+K +V VIHY+LP ++E Y QE GRAGRDG S +L
Sbjct: 293 NKPNVRFVIHYALPATIESYYQEAGRAGRDGLESDANLLF 332
>gi|212556881|gb|ACJ29335.1| ATP-dependent DNA helicase RecQ [Shewanella piezotolerans WP3]
Length = 644
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 156/411 (37%), Positives = 230/411 (55%), Gaps = 18/411 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N LL+ +G+++FR+GQ + + +L+ S + PTG+GKSLCYQ+PA +LP LTLVV
Sbjct: 3 NAHALLKQYFGFNAFREGQEQVVSNILNGLSAAAIFPTGSGKSLCYQLPATVLPHLTLVV 62
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQL L I + S+Q PEE A + + G+IKVL +S ER LN +
Sbjct: 63 SPLLALMQDQLAFLKTRGISAASIDSTQTPEEAASVLDGVSNGSIKVLMISVER-LNNER 121
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
F ISL+VVDEAHC+SEW HNFRP Y++L + + LN+ +L +TATAT+
Sbjct: 122 FRRFIGGIEISLLVVDEAHCISEWGHNFRPDYLKLPS--YQRELNISQVLLLTATATSKV 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQL-SVSLSGNNRQNERSAYVDEVFSFHR--SSKHY 423
+ D+ S I +++ R NL L ++ + ++Q Y+ E + S Y
Sbjct: 180 IADMSSKFAIDDNSITLTGFYRPNLHLNAIGIEEASKQR----YLTEWLQTRKLVSGIIY 235
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
LQ S + ++ L SV +YH+G+ ++ R IQ F S ++ ++VAT+AFG
Sbjct: 236 VTLQKSAES-----VASQLQRAGYSVMAYHAGMDSEQRKAIQTKFMSGEVPIIVATIAFG 290
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK D+ V+HY LP+S+E Y QEIGRAGRDG S C + + L + +Y D
Sbjct: 291 MGIDKSDIRFVVHYDLPKSIENYAQEIGRAGRDGSDSECLVLANKDNLNVLENFVYGDTP 350
Query: 544 DEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
+ AI + Q+ S L+ S +I+ + TLL LE+
Sbjct: 351 ELSAICTVIEQIKEQTQQSDQ--WELMLNQLSSTSNIRPLSLKTLLVYLEM 399
>gi|148697660|gb|EDL29607.1| RecQ protein-like 4, isoform CRA_a [Mus musculus]
Length = 629
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 151/383 (39%), Positives = 217/383 (56%), Gaps = 28/383 (7%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
GY +FR GQ AI +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 178 GYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLSL 237
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL---SIF 310
M DQ+ LP + L S ++ ++ ++ + VL VSPE + S+
Sbjct: 238 MDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGARGPGSLP 297
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
A L I+ +DE HC+S+WSHNFRP Y+R+ +LR + V C L +TATAT +T R
Sbjct: 298 QAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRV-CKVLREHMGVRCFLGLTATATRSTAR 356
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF---H 417
DV L I L A + NL LSVS+ ++ Q +R +D V +
Sbjct: 357 DVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVIIYCTRR 416
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
+ ++ L + D R C ++YH+G+ +++R R+Q+ F +R+VV
Sbjct: 417 KDTERVAALLRTCLSMVGDSRPRG-CGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVV 475
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFR 533
ATVAFGMGLD+ DV AV+H LP S E YVQ IGRAGRDG+ ++CHLF+ +D+ +
Sbjct: 476 ATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLFMHPQGEDL--WE 533
Query: 534 LRSLMYSDGVDEYAINKFLCQVF 556
LR ++D D A+ + + +VF
Sbjct: 534 LRRHAHADSTDFLAVKRLVQRVF 556
>gi|218781622|ref|YP_002432940.1| RecQ familyATP-dependent DNA helicase [Desulfatibacillum
alkenivorans AK-01]
gi|218763006|gb|ACL05472.1| ATP-dependent DNA helicase, RecQ family [Desulfatibacillum
alkenivorans AK-01]
Length = 642
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 193/619 (31%), Positives = 298/619 (48%), Gaps = 35/619 (5%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+++F GQ E + ++L KS + PTGAGKSLCYQ+PA+ LPGLTLV+ PL++LM D
Sbjct: 13 FGFETFLKGQKEVVDLILAGKSACALFPTGAGKSLCYQLPALALPGLTLVISPLLSLMKD 72
Query: 257 QLRH-LPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
QL L I L SS EE ++ + + G +K+L +S ERF N F I
Sbjct: 73 QLDFCLEKGIPAARLDSSLSREEYSQVLDDAKSGKLKILMISVERFRNERF-RIHLKKWK 131
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARL-NVECILAMTATATTTTLRDVMSAL 374
+SL+VVDEAHC+SEW HNFRP Y+++ AR+ N +L +TATA D+
Sbjct: 132 LSLLVVDEAHCISEWGHNFRPEYLKIPTY---ARVFNAPQVLLLTATAVPEVQEDMRGKF 188
Query: 375 EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
IP N + R+NL L V+ ++++++ A D + + ++ Y + +
Sbjct: 189 GIPPENFVNTGFYRENLYLRVAPMPDSQKDQ--ALKDIIANKPQAPTIVY----ATRQKT 242
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
+ ++ +L + K+YH+G+ ++R +Q F K+ VV AT+AFGMG+DK D+ V
Sbjct: 243 AEQVAEFLKKQGFAAKAYHAGMRNEEREAVQNEFMEGKVHVVAATIAFGMGIDKSDIRRV 302
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVDEYAINKFL 552
IHY LP+SLE Y QEIGRAGRDGR + C LD + L + +Y D ++ I +
Sbjct: 303 IHYDLPKSLEGYSQEIGRAGRDGRPALCQALPNLDGMNI--LENYVYGDTPEKEGIAAVV 360
Query: 553 CQVFTNGMNSHG-KLCSLVKESASRKFDIKEEVMLTLLTCLE-LGEIQYLQ-LLPELKVT 609
Q+ N N +L +L S + DI+ + TLL LE +G I+ ++ E+
Sbjct: 361 DQIHNNESNEWEVRLFAL-----SSQTDIRALPLKTLLVYLEMMGIIEPIKTYFDEISFK 415
Query: 610 CTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK 669
N + ++ + V IL S+ + D+ + + + L +
Sbjct: 416 PLKNLNNLPENFQGERREFVENILANSQAAKIWRRPDMGAIMKQTHSPRERILVALEYFE 475
Query: 670 MRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV--FAV 727
+G + Y +++ D AL L + E +V ++ HA V F
Sbjct: 476 GKGWMELRSSRAVDVYRLIKKDFDKDALCQELHSLFEKKEKAEVSRV----HALVDFFQE 531
Query: 728 DVC--EKTHGCNGSLHTP-CLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQSNL 784
C + G G P C + + G K+ S F D+ L
Sbjct: 532 RRCLPQSLSGHFGDQSAPKCGHCTVCE--TGPAKLKSYKKLAPLSGFNYNDLTAAFSQAL 589
Query: 785 NAKFTPRAVARILHGIASP 803
K T AR L G+ SP
Sbjct: 590 QGKATAIKTARFLCGLPSP 608
>gi|421497070|ref|ZP_15944260.1| DNA helicase [Aeromonas media WS]
gi|407183881|gb|EKE57748.1| DNA helicase [Aeromonas media WS]
Length = 635
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 201/633 (31%), Positives = 286/633 (45%), Gaps = 64/633 (10%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+D R GQ I +L KS + PTGAGKSLCYQ+PA+ LP LTLV+ PL+ALM D
Sbjct: 5 FGFDQLRPGQEAVISRLLAGKSAAAIFPTGAGKSLCYQLPALALPHLTLVISPLLALMHD 64
Query: 257 QLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
QL L I L SSQ PEE ++ G +K+L +S ER N F F A
Sbjct: 65 QLAFLQRKGIAAATLDSSQTPEESRRVMQQASDGQLKILMISVERLKNERFRR-FIAQVP 123
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
+SL+VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT + D+ +
Sbjct: 124 LSLLVVDEAHCISEWGHNFRPDYLKLPDH--RRDLAIPQVLLLTATATPAVMADMQAKFA 181
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYI-LQISGKHF 433
I +L+ R NL L+V L+GN R DE+ + Y+ LQ S +
Sbjct: 182 IEAEDLVVTGFYRPNLDLAVIPLAGNARDGWLR---DELRRDPAAPTIVYVTLQQSAQQC 238
Query: 434 ETDLISRYLCDNSISVKS--YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
L +I +++ YH+G+ RS+IQ F + ++ +VAT+AFGMG+DK D+
Sbjct: 239 ADQL-------QAIGIRACAYHAGLDPALRSQIQHDFMAGRLDCIVATIAFGMGIDKADI 291
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIHY LP+S+E Y QEIGRAGRDG S C + L + +Y D D AI
Sbjct: 292 RRVIHYDLPKSIENYSQEIGRAGRDGLPSRCMVLASRAQLPVLENFVYGDTPDREAILSL 351
Query: 552 LCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKVT 609
L + +G L L E+ R+ +K TLL LE+ I E +
Sbjct: 352 LQILQQSGAEWEFGLLRLSNETNIRQLPLK-----TLLVYLEMAGIIAPAYSYFAEYRFK 406
Query: 610 CTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLK 669
L + D+ + + + + + D + + L L+
Sbjct: 407 FVLEKREILAHFNPDRRQFLEQLFACAPQARSWCTMDFDALWQGYQGERQRAAAALDYLQ 466
Query: 670 MRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDV 729
+G I E K Y +V D AL+ L + E ++ +L + F
Sbjct: 467 QQGWIELESKQMTEVYRVVRQHIDPAALAEELHGLFEKKEQSELARLQALL--GFFT--- 521
Query: 730 CEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFL--------- 780
T CL + YF + + P + G S R +I V
Sbjct: 522 -----------STRCLSHELARYFADE---EAPERCGHCS-VCRGEITVLPPLPSPGLPN 566
Query: 781 QSNLNA----------KFTPRAVARILHGIASP 803
+ L A + PR + R L GIA+P
Sbjct: 567 EHGLRAWCDPLIALCHQRHPRILTRFLCGIATP 599
>gi|113970284|ref|YP_734077.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
gi|113884968|gb|ABI39020.1| ATP-dependent DNA helicase, RecQ family [Shewanella sp. MR-4]
Length = 658
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 191/599 (31%), Positives = 287/599 (47%), Gaps = 71/599 (11%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+D FR GQ E + +L S++ + PTG+GKSLCYQ A+ LP LTLVV PL+
Sbjct: 17 LLQQQFGFDGFRQGQHEVVSQLLSGHSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPLL 76
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
AL+ DQL L I + S+ PE + +R + G +K+L VS ERF N F F
Sbjct: 77 ALIKDQLSFLHEKGIKAASIDSTLTPELTQQVMRDARSGELKLLMVSVERFKNERFRQ-F 135
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ IS++VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT D+
Sbjct: 136 IQSIPISMLVVDEAHCISEWGHNFRPDYLKLPD--YRRELAIPLVLLLTATATRKVKLDM 193
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ +I +++Q R NL L+V + Q++ +A ++ F + Y LQ
Sbjct: 194 AARFDIKPQHIVQTGFYRSNLDLTVLPVAS--QHKLTALQQQLNHFTGAGIVYVTLQ--- 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
H D+ ++ LC +YH+G + R +IQ+ F KIR+VVAT+AFGMG+DK +
Sbjct: 249 -HTAEDVAAK-LCQMGFDASAYHAGFEDEKRQQIQQDFMQGKIRIVVATIAFGMGIDKSN 306
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVDEYAI 548
+ V+HY LP+S+E Y QEIGRAGRDG+LS+C LD I + + +Y D + +I
Sbjct: 307 IRFVVHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLDGIN--TVENFVYGDTPELASI 364
Query: 549 NKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-----------GEI 597
+ + +H L S +I++ + TLL LE+ +I
Sbjct: 365 TAVIDNIRE---ETHNGRWELQLHQLSNVSNIRQLPLKTLLVQLEMMGVIKPLYAYYADI 421
Query: 598 QYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGAT 657
Y + P+ ++ + ++ + I ++ K+ D + + GA
Sbjct: 422 SYRFIEPQAQILSQFS---------PERQAFLNDIFTHTQMKRVWGSLDFSALYQATGAE 472
Query: 658 TIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEV-------EN 710
V L L + I E K Y +V ++ A HL L + E
Sbjct: 473 RTRVLAALEYLASQQLIELEAKRVTDVY---QVNTEVLA-QGHLADGLHQYFTDKEAKEV 528
Query: 711 CKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
++ +L R F T CL N+ YF DDN P G S
Sbjct: 529 ARIAQLVRFFEL-------------------TTCLNYNLARYF--DDNA-APQSCGHCS 565
>gi|418037617|ref|ZP_12675992.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Lactococcus lactis subsp. cremoris CNCM
I-1631]
gi|354694385|gb|EHE94051.1| Hydrolase acting on acid anhydrides in phosphorous-containing
anhydrides [Lactococcus lactis subsp. cremoris CNCM
I-1631]
Length = 592
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 212/340 (62%), Gaps = 10/340 (2%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ ++GYD+FR+GQ + I+ VLD ++T+ +LPTGAGKS+CYQ+PA+I PGLTLV+
Sbjct: 2 NLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVI 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I F++S+ E + +R ++ G IK+LFV+PERF + D+
Sbjct: 62 SPLISLMKDQVDQLNIAGIPATFINSTLEDSESYQRMRQVENGEIKLLFVAPERF-SLDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ F I LV +DEAHC+S+W H+FRPSY+ AS L+ +LA+TATAT
Sbjct: 121 FNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDF-ASHLQYLPTNPTVLALTATATPKF 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D+ L I S+ I+ LR+NL+ V + G +++ Y+ ++ S+ I+
Sbjct: 180 ADDIQKLLSISPSHTIKTGFLRENLRFEV-VKGMDKRTFLKNYLK-----NQESEAAGII 233
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
S + E + I +L N YH+G+ ++R QELF +++ ++VAT AFGMG+
Sbjct: 234 YASTRK-EVEEICEWLNHNHFKSVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGI 292
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+K +V VIHY+LP ++E Y QE GRAGRDG S +L
Sbjct: 293 NKPNVRFVIHYALPATIESYYQEAGRAGRDGLESDANLLF 332
>gi|261253755|ref|ZP_05946328.1| ATP-dependent DNA helicase RecQ family [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|417955430|ref|ZP_12598448.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260937146|gb|EEX93135.1| ATP-dependent DNA helicase RecQ family [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|342813100|gb|EGU48077.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 646
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 155/414 (37%), Positives = 232/414 (56%), Gaps = 18/414 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N+ +L+ +G+D R+GQ I+ VL+ +S + PTG+GKSLCYQ+PA+ LP LT+VV
Sbjct: 9 NVQTILKSTFGFDQLREGQQHVIETVLENRSCAAIFPTGSGKSLCYQLPALCLPHLTIVV 68
Query: 248 CPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQL L I + SS EE+ + I+ G +K+L +S ER N F
Sbjct: 69 SPLLALMKDQLAFLHSKGIAAASIDSSLSREEIQHVMNQIRQGELKILMISVERLKNERF 128
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ L SL+VVDEAHC+SEW HNFRP Y++L L LN+ L +TATAT +
Sbjct: 129 RQFISQIPL-SLLVVDEAHCISEWGHNFRPDYLKLPQYL--QELNIPQALLLTATATQSV 185
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI- 425
+ D+ I +++I R NL ++++ ++E A ++ + ++ Y+
Sbjct: 186 IEDMQRKFSIEPNDIIITGFYRSNLDITIAPCEEEDKSE--ALLELLRPDPKAPTVVYVT 243
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
LQ + + + I R +N+++ YH+G+ + DR +IQ F S ++ +VAT+AFGMG
Sbjct: 244 LQNTAETVAS--ILRKSGNNALA---YHAGLASDDREKIQNQFMSGEVDCIVATIAFGMG 298
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 299 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQPSQCILLANQSGISTLENFIYGDTPEP 358
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQ 598
I L Q + L L ES R+ +K TLL +E+ G IQ
Sbjct: 359 NDIQAVLEQALNHSPQWEVVLSRLASESNVRQLPLK-----TLLVYVEMAGLIQ 407
>gi|395797235|ref|ZP_10476526.1| putative ATP-dependent DNA helicase [Pseudomonas sp. Ag1]
gi|395338659|gb|EJF70509.1| putative ATP-dependent DNA helicase [Pseudomonas sp. Ag1]
Length = 645
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 185/585 (31%), Positives = 290/585 (49%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ + VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LQQVFGYPQFRLGQEAVVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ + + + G +K+L VS ER N F + F
Sbjct: 65 LMQDQLGFLQRHGISAGSIDSAQSRDDANDVMARARSGELKILMVSVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + + L +TATAT + D+
Sbjct: 124 QSVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFRIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I ++I R NL L V +SG +++ ++ E ++ S Y LQ +
Sbjct: 182 AKFAIAPDDVITTGFYRSNLNLLVEPVSGQDKRRRLVTWMQE--RANQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L N I ++YH+G+ R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLNRNGIQAEAYHAGLAHDKREAIQKRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSECLVLANRDSLNILENFVYGDTPEQEGIRR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ + + G+ +++ S S +I+E + TLL LEL + + P
Sbjct: 355 VLEEI--QAVRADGQWEFMLR-SLSDHSNIRELPLKTLLVQLELKGV----IAPRYAFYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + VA I++ + + D + A V
Sbjct: 408 EYRFKYLIEPEALLARFTGERQQFVAAIIQVCKRAKTWATVDFDALYQQHQAERSRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G I E + Y ++ D ALS L + E +V ++ M +
Sbjct: 468 LDYFQEQGLIEMESRQMTEVYALLNTDFDPQALSTELYTGFKQHEVTEVARIHAMLD--L 525
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA + CL + YF GD+N P + G S
Sbjct: 526 FATE--------------ECLGYRLAHYF-GDENA--PRQCGHCS 553
>gi|444424981|ref|ZP_21220430.1| ATP-dependent DNA helicase RecQ [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444241766|gb|ELU53286.1| ATP-dependent DNA helicase RecQ [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 641
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 197/640 (30%), Positives = 302/640 (47%), Gaps = 58/640 (9%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA LP LTLV
Sbjct: 4 DSLQQTLQSVFGFDSLRSGQQPVIEAVMNGHSAAAIFPTGSGKSLCYQLPATQLPHLTLV 63
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQL L I + SSQ +E + + ++ G IK+L +S ER N
Sbjct: 64 ISPLLALMKDQLSFLQGRGIAAASIDSSQSRKETQQVMAGVKNGHIKILMISVERLKNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F L SL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 124 FREFIRQIPL-SLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQTLLLTATATPA 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D+ S +I N+ R NL +SV +N+++ D + + + Y+
Sbjct: 181 VIEDMQSKFDIASENVTVTGFYRSNLDISVVPC--EEENKQTQLNDIIAAAPKLPSIVYV 238
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
Q + ++ L I+ +YH+G+ + R +IQ+ F ++I +VAT+AFGMG
Sbjct: 239 TQ----QQTAEQVASSLIRLGINAHAYHAGMKSDIREKIQQQFMDSQIDCIVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 295 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEP 354
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELG---EIQYLQL 602
+IN L Q+ N L ++S R+ +K T L LEL E +Y
Sbjct: 355 SSINYVLEQIRENTPQWEVMALRLSRDSNIRQLPLK-----TSLVYLELAKVIEAKY-SY 408
Query: 603 LPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
E + + ++ + V I S + D+ + + + V
Sbjct: 409 FAEYRFKFLQDQSFILNQFQGERRQFVEAIFACSTKAKVWCQVDLEALWMNYQSERSRVV 468
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L G I E K Y+++ + +S HL + E + ++ M
Sbjct: 469 AALDYFHQNGWIELESKQLTDVYSVLPATQNQEVISQHLVELFQSKEQKDIERIHTM--- 525
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVFLQ- 781
+D+ + + CL + YF D N P + G S R I F Q
Sbjct: 526 ----LDLFQSSD---------CLSHQLAHYF-ADHNA--PTQCGHCS-VCRGQIASFPQP 568
Query: 782 -------SNLNA------KFTPR-----AVARILHGIASP 803
++L+A + +P AVAR L GI++P
Sbjct: 569 QQEQPELTHLSAWVDEFVQLSPTAISNAAVARFLCGISTP 608
>gi|153836814|ref|ZP_01989481.1| DNA helicase [Vibrio parahaemolyticus AQ3810]
gi|260364760|ref|ZP_05777347.1| ATP-dependent DNA helicase, RecQ family [Vibrio parahaemolyticus
K5030]
gi|260900363|ref|ZP_05908758.1| ATP-dependent DNA helicase, RecQ family [Vibrio parahaemolyticus
AQ4037]
gi|308095247|ref|ZP_05904399.2| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus Peru-466]
gi|149749960|gb|EDM60705.1| DNA helicase [Vibrio parahaemolyticus AQ3810]
gi|308089352|gb|EFO39047.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus Peru-466]
gi|308108612|gb|EFO46152.1| ATP-dependent DNA helicase, RecQ family [Vibrio parahaemolyticus
AQ4037]
gi|308115341|gb|EFO52881.1| ATP-dependent DNA helicase, RecQ family [Vibrio parahaemolyticus
K5030]
Length = 641
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 190/636 (29%), Positives = 304/636 (47%), Gaps = 52/636 (8%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA +LP LTLV+
Sbjct: 5 QLLQTLQSVFGFDSLRQGQQPVIESVMNGYSAAAIFPTGSGKSLCYQLPATMLPNLTLVI 64
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQL L I + SSQ EE + ++ G IK+L +S ER N F
Sbjct: 65 SPLLALMKDQLSFLQSKGIAAASIDSSQSREEAQRVMVGVKNGEIKILMISVERLKNERF 124
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
F ISL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 125 RE-FIRQVPISLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQTLLLTATATPAV 181
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+ D+ + +I ++ R NL +SV ++E+ ++ + + + K I+
Sbjct: 182 IEDMKNKFDIASDHITVTGFYRSNLDISVIPC---EESEKQTQLNTIVA--AAPKLPTIV 236
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
++ + + +++ L ++ +YH+G+ ++ R +IQ+ F + +I +VAT+AFGMG+
Sbjct: 237 YVTQQQ-TAEQVAKSLIHIGVNAHAYHAGMKSEVREQIQQQFMAGQIDCIVATIAFGMGV 295
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + ++ D +
Sbjct: 296 DKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVFGDTPERS 355
Query: 547 AINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLP 604
+I+ L Q+ H +V SR+ +I++ + TLL LEL ++
Sbjct: 356 SISYVLGQI-----KEHQPQWEVVPLRLSRESNIRQLPLKTLLVYLELAKVIEAKFSYFA 410
Query: 605 ELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
E + N ++ + V I S + D+ + + V
Sbjct: 411 EYRFKFLQNQQFIVNQFQGERREFVEAIFTCSTKAKVWCQVDLDALWMHYHSERSRVVAA 470
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L G + E K Y+++ + ++ HL + E + +DR+
Sbjct: 471 LDYFHQNGWVELESKQLTDVYSVLPDTQNIEDITQHLYELFQSKER---KDIDRI----- 522
Query: 725 FAVDVCEKTHGCNGSLHTP-CLQKNILDYF---------------RGDDNCDVPNKIGQS 768
H G + CL + YF RG + P Q
Sbjct: 523 ---------HAMLGLFQSSDCLSHQLASYFADHNAPAHCGHCSVCRGQRSVFPPRIYDQP 573
Query: 769 SPFL-RADIKVFLQSNLNAKFTPRAVARILHGIASP 803
P + A I F+Q + +A + A+AR L GI++P
Sbjct: 574 EPAVASAWIAEFVQLSPSA-ISNEAIARFLCGISTP 608
>gi|28899115|ref|NP_798720.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus RIMD
2210633]
gi|308094400|ref|ZP_07662908.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AN-5034]
gi|28807339|dbj|BAC60604.1| putative ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus
RIMD 2210633]
gi|308091423|gb|EFO41118.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AN-5034]
Length = 654
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 190/636 (29%), Positives = 304/636 (47%), Gaps = 52/636 (8%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA +LP LTLV+
Sbjct: 18 QLLQTLQSVFGFDSLRQGQQPVIESVMNGYSAAAIFPTGSGKSLCYQLPATMLPNLTLVI 77
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQL L I + SSQ EE + ++ G IK+L +S ER N F
Sbjct: 78 SPLLALMKDQLSFLQSKGIAAASIDSSQSREEAQRVMVGVKNGEIKILMISVERLKNERF 137
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
F ISL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 138 RE-FIRQVPISLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQTLLLTATATPAV 194
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+ D+ + +I ++ R NL +SV ++E+ ++ + + + K I+
Sbjct: 195 IEDMKNKFDIASDHITVTGFYRSNLDISVIPC---EESEKQTQLNTIVA--AAPKLPTIV 249
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
++ + + +++ L ++ +YH+G+ ++ R +IQ+ F + +I +VAT+AFGMG+
Sbjct: 250 YVTQQQ-TAEQVAKSLIHIGVNAHAYHAGMKSEVREQIQQQFMAGQIDCIVATIAFGMGV 308
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + ++ D +
Sbjct: 309 DKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVFGDTPERS 368
Query: 547 AINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLP 604
+I+ L Q+ H +V SR+ +I++ + TLL LEL ++
Sbjct: 369 SISYVLGQI-----KEHQPQWEVVPLRLSRESNIRQLPLKTLLVYLELAKVIEAKFSYFA 423
Query: 605 ELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
E + N ++ + V I S + D+ + + V
Sbjct: 424 EYRFKFLQNQQFIVNQFQGERREFVEAIFTCSTKAKVWCQVDLDALWMHYHSERSRVVAA 483
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L G + E K Y+++ + ++ HL + E + +DR+
Sbjct: 484 LDYFHQNGWVELESKQLTDVYSVLPDTQNIEDITQHLYELFQSKER---KDIDRI----- 535
Query: 725 FAVDVCEKTHGCNGSLHTP-CLQKNILDYF---------------RGDDNCDVPNKIGQS 768
H G + CL + YF RG + P Q
Sbjct: 536 ---------HAMLGLFQSSDCLSHQLASYFADHNAPAHCGHCSVCRGQRSVFPPRIYDQP 586
Query: 769 SPFL-RADIKVFLQSNLNAKFTPRAVARILHGIASP 803
P + A I F+Q + +A + A+AR L GI++P
Sbjct: 587 EPAVASAWIAEFVQLSPSA-ISNEAIARFLCGISTP 621
>gi|92113448|ref|YP_573376.1| ATP-dependent DNA helicase RecQ [Chromohalobacter salexigens DSM
3043]
gi|91796538|gb|ABE58677.1| ATP-dependent DNA helicase, RecQ-like protein [Chromohalobacter
salexigens DSM 3043]
Length = 664
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 193/625 (30%), Positives = 292/625 (46%), Gaps = 66/625 (10%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ + ++ V +S + PTG+GKSLCYQ+PA+ LP LTLVV PL+A
Sbjct: 8 LQRVFGYADFRPGQRQVVEAVTQGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVVSPLLA 67
Query: 253 LMIDQL----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
LM DQL RH I L S Q EE + + ++ G I++L +S ER N F +
Sbjct: 68 LMQDQLEFLRRH---GIAAASLDSRQSREEASAVMDGVRRGDIRILMISVERLKNERFRA 124
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
F +SL+V DEAHC+SEW HNFRP Y++L A + + L +TATAT +
Sbjct: 125 -FLQRVPVSLLVADEAHCLSEWGHNFRPDYLKLPA--YQREFAIPQALLLTATATPRVID 181
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV-----FSFHRSSKHY 423
D+ + I ++ R NL L V + R+ A V+ + S + S Y
Sbjct: 182 DMRDSFAIDARDVAATGFYRPNLDLQVQPTATERRPR--ALVEWLGPRLAASPPQPSIVY 239
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
LQ + + ++ YL + ++YH+G+ + R +Q+ F + +I +VAT+AFG
Sbjct: 240 VTLQKTAEQ-----MAAYLGKAGLEARAYHAGLDGETRDALQQAFMNGEINCIVATIAFG 294
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK D+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + L + +Y D
Sbjct: 295 MGIDKADIRNVVHFDLPKSIENYSQEIGRAGRDGQPSSCLMLGGRDALGALENFVYGDTP 354
Query: 544 DEYAINKFLCQVFTNGMNSHG--KLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQ 601
+ I + L + +L +L + S R +K TLL LEL +
Sbjct: 355 ERDGIERVLRDIRDAAPQGQWEVRLNALSQHSNIRPLPLK-----TLLVRLELEGV---- 405
Query: 602 LLPELKVTCTLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIG 655
+ P F + P L ++ VA +++ S + D + +++G
Sbjct: 406 IAPRYAYFAEYRFKYLIEPEALIERFNGERRDFVAALIEASPRAKTWCALDHEAL-DALG 464
Query: 656 A------TTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVE 709
A T V + L +G I E K Y +++ D AL+ HLT++ E
Sbjct: 465 AERGLDTTRRRVISALEYFNDQGFIQLESKQMTEVYGVLQAEFDIAALATHLTEYFQRKE 524
Query: 710 NCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
++ +L M +F T CL + + DYF GD P G S
Sbjct: 525 AAEIERLQAML--TLFE--------------STTCLSRRLADYF-GDHQA--PEHCGHCS 565
Query: 770 PFLRADIKVFLQSNLNAKFTPRAVA 794
R + A PR +A
Sbjct: 566 -VCRGHVARLPADTARAPLDPRQLA 589
>gi|421140682|ref|ZP_15600679.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens BBc6R8]
gi|404508136|gb|EKA22109.1| ATP-dependent DNA helicase RecQ [Pseudomonas fluorescens BBc6R8]
Length = 645
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 185/585 (31%), Positives = 289/585 (49%), Gaps = 44/585 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ + VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LQQVFGYPQFRLGQEAVVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q ++ + + + G +K+L VS ER N F + F
Sbjct: 65 LMQDQLGFLQRHGISAGSIDSAQSRDDANDVMARARSGELKILMVSVERLKNERFRN-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + + L +TATAT + D+
Sbjct: 124 QSVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFRIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I ++I R NL L V +SG +++ ++ E ++ S Y LQ +
Sbjct: 182 AKFAIAPDDVITTGFYRSNLNLLVEPVSGQDKRRRLVTWMQE--RANQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L N I ++YH+G+ R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLNRNGIQAEAYHAGLAHDKREAIQKRFMGGQSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D ++ I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSECLVLANRDSLNILENFVYGDTPEQEGIRR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ + + G+ +++ S S +I+E + TLL LEL + + P
Sbjct: 355 VLEEI--QAVRADGQWEFMLR-SLSDHSNIRELPLKTLLVQLELKGV----IAPRYAFYA 407
Query: 611 TLNF-HKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F + P L ++ + VA I++ + + D + A V
Sbjct: 408 EYRFKYLIEPEALLARFTGERQQFVAAIIQVCKRAKTWATVDFDALYQQHQAERSRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + +G I E + Y ++ D ALS L + E +V ++ M +
Sbjct: 468 LDYFQEQGLIEMESRQMTEVYALLNTDFDPPALSTELYTGFKQHEVTEVARIHAMLD--L 525
Query: 725 FAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
FA CL + YF GD+N P + G S
Sbjct: 526 FATQ--------------ECLGYRLAHYF-GDENA--PRQCGHCS 553
>gi|386341044|ref|YP_006037410.1| RecQ familyATP-dependent DNA helicase [Shewanella baltica OS117]
gi|334863445|gb|AEH13916.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica OS117]
Length = 662
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 178/551 (32%), Positives = 276/551 (50%), Gaps = 37/551 (6%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+ FR GQ + I +L KS++ + PTG+GKSLCYQ A+ LP L+LV+ PL+
Sbjct: 14 LLQQDFGFSEFRPGQAQTITQLLAGKSSLAIFPTGSGKSLCYQFTALQLPHLSLVISPLL 73
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L IH + S+ E+ + + + G +K+L VS ERF N F
Sbjct: 74 ALMKDQLEFLQSKGIHAASIDSTLSAEQSQQVMADARSGKLKILMVSVERFKNERFRQFI 133
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L S++VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT D+
Sbjct: 134 QSVPL-SMLVVDEAHCISEWGHNFRPDYLKLPD--YRGELEIPLVLLLTATATRKVKLDM 190
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+I +++Q R NL L+V +N + V+++ SF + Y LQ +
Sbjct: 191 AKRFDIAPEHIVQTGFYRPNLDLTVLPVSTQEKN--ALLVNQIASFSGAGIVYVTLQQTA 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++R L I +YH+G + R +IQ F +K++VVVAT+AFGMG+DK +
Sbjct: 249 -----ETVARLLSQQGIVASAYHAGFEDEKRQQIQNDFMQDKLQVVVATIAFGMGIDKSN 303
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIHY LP+S+E Y QEIGRAGRDG LS+C + + + +Y D + I +
Sbjct: 304 IRFVIHYDLPKSIENYSQEIGRAGRDGALSHCVTLANLDGLNTVENFVYGDTPEREGIAQ 363
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLE-LGEIQYL-QLLPELKV 608
+ + +S C L S +I++ + TLL LE LG ++ L ++
Sbjct: 364 VI-EAIRFEQDSGQWECQL--NGVSTASNIRQLPLKTLLVQLEILGVVKPLFAYYADVNY 420
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIG--------ATTID 660
+N H ++ + I ++ K+ D + ++ G A
Sbjct: 421 KFLVNKHAILSRFNPERQAFLTQIFNHTQMKKIWGALDFDALYSATGHERSRVLAALEYL 480
Query: 661 VSNQLLNLK-------MRGEITY----ELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVE 709
+ L+ L+ R ++T EL D Y Y I + + + A L ++ E+E
Sbjct: 481 AEHHLIELETKRITDVYRVDVTALARPELIDELYHYFIDKEQKEIARI-AQLVRFF-ELE 538
Query: 710 NCKVRKLDRMF 720
C L R F
Sbjct: 539 TCLSHNLSRYF 549
>gi|163803785|ref|ZP_02197639.1| putative ATP-dependent DNA helicase RecQ [Vibrio sp. AND4]
gi|159172404|gb|EDP57276.1| putative ATP-dependent DNA helicase RecQ [Vibrio sp. AND4]
Length = 488
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 228/412 (55%), Gaps = 15/412 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA LP LTLV
Sbjct: 4 DSLVQTLQSVFGFDSLRPGQHCVIEAVMNGHSAAAIFPTGSGKSLCYQLPATQLPHLTLV 63
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQL L I + SSQ EE + + ++ G IKVL +S ER N
Sbjct: 64 ISPLLALMKDQLSFLQDKGIAAASIDSSQSREETQQVMAGVKSGQIKVLMISVERLKNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F L SL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 124 FREFIRQIPL-SLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQTLLLTATATPA 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D+ S I N+ R NL LS + + +++++ D + + + Y+
Sbjct: 181 VIEDMQSKFNIAHENITVTGFYRPNLDLS--MVPCDEEHKQTQLNDIIAASPKLPSIVYV 238
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
Q + ++ L I+ +YH+G+ + R +IQ+ F ++I +VAT+AFGMG
Sbjct: 239 TQ----QQTAEQVASSLIRLGINAHAYHAGMKSDVREKIQQQFMDSQIDCIVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 295 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEP 354
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
+IN + Q+ N L ++S R+ +K TLL LEL ++
Sbjct: 355 SSINYVIKQIRENTPQWEVMTLRLSRDSNIRQLPLK-----TLLVYLELAKV 401
>gi|407921699|gb|EKG14839.1| Helicase [Macrophomina phaseolina MS6]
Length = 776
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 188/652 (28%), Positives = 319/652 (48%), Gaps = 66/652 (10%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP--------- 241
++L+ +G D FR Q I +L S ++V PTG GKSLCYQ+PA+ P
Sbjct: 69 KILKQRFGLDQFRLEQEAVISRILAGGSAVVVFPTGGGKSLCYQVPALAFPELDAQQQNG 128
Query: 242 ------GLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVL 294
G+T+VV PL+ALM DQ+ L I+ + SS+ +E T+ ++ GA+++L
Sbjct: 129 RGPGDSGVTIVVSPLIALMKDQVDALQKRNINAVCMDSSKTRDEYLATMDALRAGAVRLL 188
Query: 295 FVSPERFLNADFLS-IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVE 353
+ +PER N F+ I + + LV VDEAHC+SEW H+FRP Y L+ + + + E
Sbjct: 189 YCAPERLNNEGFVECIRSVRGGVRLVAVDEAHCISEWGHSFRPDY--LKVARFVSEIKAE 246
Query: 354 CILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV 413
++ +TATAT +D+ A I + L + R NL+L V S ++++ AY ++
Sbjct: 247 RVVCLTATATPKVAQDICDAFGIDDTGLFRTPMYRSNLRLLVESS----RDKQDAY-PKL 301
Query: 414 FSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKI 473
F F R + I+ ++ + +++ ++ L + +H+G+ A +++ +QE F
Sbjct: 302 FRFLRQNPGPTIIYVTLQK-QSEALASDLRQKGFEARHFHAGMQASEKTALQEEFMRRND 360
Query: 474 RVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFR 533
V+ AT+AFGMG+DK ++ V+H+++P S+E Y Q+IGRAGRDG S C LFLD +
Sbjct: 361 MVICATIAFGMGIDKANIRNVVHFNIPRSVEGYCQQIGRAGRDGLKSSCLLFLDPDDLYL 420
Query: 534 LRSLMYSDGVDEYAINKFLCQVFTNGMN--SHGKLCSLVKESASRKFDIKEEVMLTLLTC 591
+L Y D ++ +FL VF+ G+ ++ + S +FDI++ + L
Sbjct: 421 QENLTYGDLPSRDSVRRFLQDVFSPEHQRLKVGETFNVSQYSQREEFDIRDTTLSILYAK 480
Query: 592 LELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYV-FDIPTV 650
+EL P+ + ++ L +D+ V+ ++++ TK +Y D+
Sbjct: 481 IELQFGLIRATTPQYSKYAWVEINQR--KLQSDR-SAVSIAIQQNATKAKKYFNLDVQAT 537
Query: 651 ANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVE-VPSDFCALSAHLTKWLSEVE 709
+ G DV +L I + + Y I++ +PS A L K +++
Sbjct: 538 CRAAGVNRADVIRKLNQWNDEDVIELKTSGVEHVYRILQKLPSTATETEAILDKLYKQMQ 597
Query: 710 NCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIG--- 766
+ + + L R A V N + + CL + I +YF DD D + G
Sbjct: 598 DRERQDLLRT-QAIV------------NLATESSCLSRRIGEYF--DDKKDSALESGCGH 642
Query: 767 ---------------QSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASP 803
Q P + LQ+ ++A+ PR +AR+ +GI SP
Sbjct: 643 CTWCETKAAVVMPERQPVPTDSLQVDAILQA-VDARDDPRFLARVAYGIHSP 693
>gi|27365182|ref|NP_760710.1| ATP-dependent DNA helicase RecQ [Vibrio vulnificus CMCP6]
gi|27361329|gb|AAO10237.1| ATP-dependent DNA helicase, RecQ family [Vibrio vulnificus CMCP6]
Length = 639
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/404 (36%), Positives = 224/404 (55%), Gaps = 15/404 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L ++G+++ R GQ + + VL S + PTG+GKSLCYQ+PA+ LP LTLVV PL+A
Sbjct: 9 LHHIFGFEALRQGQQQVVDAVLTGHSAAAIFPTGSGKSLCYQLPALHLPHLTLVVSPLIA 68
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S Q E+ ++ + G IK+L +S ER N F F
Sbjct: 69 LMKDQLAFLHSKGIAAAAIESGQSKEQTQAIMQAVNAGEIKILMISVERLKNERFRQ-FI 127
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + +A LN+ +L +TATAT + D+
Sbjct: 128 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPS--YQATLNIPQVLLLTATATENVIADMQ 185
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
I N++ R NL L V+ N +++ A + V ++ I+ ++ +
Sbjct: 186 RKFAIKKDNVVVTGFYRANLDLHVTPCRN--EDKADALLKIV---QQAPNAPTIVYVTLQ 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
H + ++ L D I +YH+G+ + RS IQ F ++ +VAT+AFGMG+DK D+
Sbjct: 241 HTASQ-VATLLQDEGIRASAYHAGLDNELRSTIQTQFMQGQLDCIVATIAFGMGVDKADI 299
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG+ S C + + L + +Y D + I+
Sbjct: 300 RRVIHFDLPKSIENYAQEIGRAGRDGQKSDCIVLANQSGLSTLENFIYGDTPERDDISSV 359
Query: 552 LCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELG 595
+ Q+ +G + L ++ R+ +K TLL LE+
Sbjct: 360 IQQIQASGERWEVIIARLSNDTNIRQLPLK-----TLLVYLEMA 398
>gi|117920444|ref|YP_869636.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
gi|117612776|gb|ABK48230.1| ATP-dependent DNA helicase, RecQ family [Shewanella sp. ANA-3]
Length = 658
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 202/340 (59%), Gaps = 11/340 (3%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ + LL+ +G+D FR GQ E + +L S++ + PTG+GKSLCYQ A+ LP L
Sbjct: 9 ANATDYASLLQQQFGFDGFRQGQHEVVSQLLSGHSSLAIFPTGSGKSLCYQFTALQLPHL 68
Query: 244 TLVVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
TLVV PL+AL+ DQL L I + S+ PE + +R + G +K+L VS ERF
Sbjct: 69 TLVVSPLLALIKDQLSFLHEKGIKAASIDSTLTPELTQQVMRDARYGELKLLMVSVERFK 128
Query: 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
N F F + IS++VVDEAHC+SEW HNFRP Y++L R L + +L +TATA
Sbjct: 129 NERFRQ-FIQSIPISMLVVDEAHCISEWGHNFRPDYLKLPD--YRRELAIPLVLLLTATA 185
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
T D+ + +I +++Q R NL L+V + Q++ +A ++ F +
Sbjct: 186 TRKVKLDMAARFDIKPQHIVQTGFYRSNLDLTVLPVAS--QHKLTALQQQLNLFTGTGIV 243
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y LQ H D+ ++ LC +YH+G + R +IQ+ F KIR+VVAT+AF
Sbjct: 244 YVTLQ----HTAEDVAAK-LCQMGFDASAYHAGFEDEKRQQIQQDFMQGKIRIVVATIAF 298
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
GMG+DK ++ V+HY LP+S+E Y QEIGRAGRDG LS+C
Sbjct: 299 GMGIDKSNIRFVVHYDLPKSIENYCQEIGRAGRDGLLSHC 338
>gi|392555125|ref|ZP_10302262.1| putative helicase (recQ-like) protein [Pseudoalteromonas undina
NCIMB 2128]
Length = 646
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 190/592 (32%), Positives = 290/592 (48%), Gaps = 69/592 (11%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G++ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 13 FGFNQFRAGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPHLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G IKVL VS ERF N F + +L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRSGKIKVLMVSVERFKNERFREFISQVAL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMAERFA 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKH----YYILQISG 430
I ++Q R NL L+V S+ ++ E + V R+ Y LQ S
Sbjct: 190 IDPKCIVQTGFYRANLDLNVLSVKTADKNTELTGIV-------RTQTGPGIVYVTLQQSA 242
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ L + +YH+G+ R +IQ+ F + KI VVVAT+AFGMG+DK D
Sbjct: 243 EQ-----VANMLSAQGLQAVAYHAGLEDTLRGQIQDDFMAGKINVVVATIAFGMGVDKSD 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD-----GVDE 545
+ VIHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D G+ E
Sbjct: 298 IRFVIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGI-E 356
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEI--QYLQL 602
Y IN + + + + S S + +I++ + TLL LE+ G I QY
Sbjct: 357 YVIND---------IRQAQQQWEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQY-AY 406
Query: 603 LPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQ--GQYVFDIPTVANSIGATTID 660
+ K ++ ++ + + I ++ K+ G FD T A + +
Sbjct: 407 YADFKYKFLVDKNELLNQFDQQRQAFLTQIFSHTDFKKIWGTLNFDSLTQAAQVDRKRVV 466
Query: 661 VSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRK---LD 717
+ L L + IT E K Y + + AL+ L + ++ E ++++ L
Sbjct: 467 AA--LDYLAEKNLITLETKRITQVYKVHSEVINNPALAQQLHDYFTDKEQAEIKRIAALV 524
Query: 718 RMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
R F CL N+ YF D+ + P + G S
Sbjct: 525 RFFEL-------------------QSCLSYNLARYF---DDANAPQQCGHCS 554
>gi|320155565|ref|YP_004187944.1| RecQ familyATP-dependent DNA helicase [Vibrio vulnificus MO6-24/O]
gi|319930877|gb|ADV85741.1| ATP-dependent DNA helicase RecQ family [Vibrio vulnificus MO6-24/O]
Length = 639
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/404 (36%), Positives = 224/404 (55%), Gaps = 15/404 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L ++G+++ R GQ + + VL S + PTG+GKSLCYQ+PA+ LP LTLVV PL+A
Sbjct: 9 LHHIFGFEALRQGQQQVVDAVLTGHSAAAIFPTGSGKSLCYQLPALHLPHLTLVVSPLIA 68
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S Q E+ ++ + G IK+L +S ER N F F
Sbjct: 69 LMKDQLAFLHSKGIAAAAIESGQSKEQTQAIMQAVNAGEIKILMISVERLKNERFRQ-FI 127
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + +A LN+ +L +TATAT + D+
Sbjct: 128 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPS--YQATLNIPQVLLLTATATENVVADMQ 185
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
I N++ R NL L V+ N +++ A + V ++ I+ ++ +
Sbjct: 186 RKFAIKKDNVVVTGFYRANLDLHVTPCRN--EDKADALLKIV---QQAPNAPTIVYVTLQ 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
H + ++ L D I +YH+G+ + RS IQ F ++ +VAT+AFGMG+DK D+
Sbjct: 241 HTASQ-VATLLQDEGIRASAYHAGLDNELRSTIQTQFMQGQLDCIVATIAFGMGVDKADI 299
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG+ S C + + L + +Y D + I+
Sbjct: 300 RRVIHFDLPKSIENYAQEIGRAGRDGQKSDCIVLANQSGLSTLENFIYGDTPERDDISSV 359
Query: 552 LCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELG 595
+ Q+ +G + L ++ R+ +K TLL LE+
Sbjct: 360 IQQIQASGERWEVIIARLSNDTNIRQLPLK-----TLLVYLEMA 398
>gi|126174317|ref|YP_001050466.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS155]
gi|125997522|gb|ABN61597.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica OS155]
Length = 662
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 197/332 (59%), Gaps = 11/332 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+ FR GQ + I +L KS++ + PTG+GKSLCYQ A+ LP L+LV+ PL+
Sbjct: 14 LLQQDFGFSEFRPGQAQTITQLLAGKSSLAIFPTGSGKSLCYQFTALQLPHLSLVISPLL 73
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L IH + S+ E+ + + + G +K+L VS ERF N F
Sbjct: 74 ALMKDQLEFLQSKGIHAASIDSTLSAEQSQQVMADARSGKLKILMVSVERFKNERFRQFI 133
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L S++VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT D+
Sbjct: 134 QSVPL-SMLVVDEAHCISEWGHNFRPDYLKLPD--YRGELEIPLVLLLTATATRKVKLDM 190
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+I +++Q R NL L+V +N + V+++ SF + Y LQ +
Sbjct: 191 AKRFDIAPEHIVQTGFYRPNLDLTVLPVSTQEKN--ALLVNQIASFSGAGIVYVTLQQTA 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++R L I +YH+G + R +IQ F +K++VVVAT+AFGMG+DK +
Sbjct: 249 -----ETVARLLSQQGIVASAYHAGFEDEKRQQIQNDFMQDKLQVVVATIAFGMGIDKSN 303
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+ VIHY LP+S+E Y QEIGRAGRDG LS+C
Sbjct: 304 IRFVIHYDLPKSIENYSQEIGRAGRDGALSHC 335
>gi|410638275|ref|ZP_11348839.1| ATP-dependent DNA helicase RecQ [Glaciecola lipolytica E3]
gi|410142195|dbj|GAC16044.1| ATP-dependent DNA helicase RecQ [Glaciecola lipolytica E3]
Length = 657
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 157/419 (37%), Positives = 233/419 (55%), Gaps = 23/419 (5%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L L+ +G++ F+ GQL I+ VL+++S + + PTG+GKSLCYQ A+ LP LTLV
Sbjct: 4 QHLETSLKQHFGFEEFKTGQLPVIEAVLNQQSCLAIFPTGSGKSLCYQFSALHLPHLTLV 63
Query: 247 VCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL+ALM DQL L I + S+ E+ + ++ ++ A+K+L VS ERF N
Sbjct: 64 VSPLLALMQDQLEFLLARDIPAAKIDSTLSYEQNQQVMKDVRSDALKILMVSVERFKNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F F + +SL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 124 FRQ-FIESVNVSLLVVDEAHCISEWGHNFRPDYLKLPD--YQKALNIPQALLLTATATPN 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D+ + I ++IQ R NL L V + ++N + V + + Y
Sbjct: 181 VKHDMAAKFAIKTQHIIQTGFYRPNLNLVVEYAPQEQKN--ALLVAHLARLKGAGIVYVT 238
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
LQ + ++ YL + YH+G+ + R Q+ F S+++++VVAT+AFGMG
Sbjct: 239 LQKEAQE-----LADYLQLQGYNAVPYHAGLSDQHRQSTQQQFMSDQVQIVVATIAFGMG 293
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK ++ VIHY LP+S+E Y QEIGRAGRDG S C + RL + +Y+D +
Sbjct: 294 VDKSNIRFVIHYELPKSIEAYSQEIGRAGRDGLTSECITLANLSNLTRLENFVYADTPER 353
Query: 546 YAINKFLCQVFTN-GMNSH------GKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
AI K L + N N+H +L L E+ R+ +K TLL LEL +I
Sbjct: 354 SAIQKVLKDIAQNCEQNTHPEPRWETQLIPLSNETNVRQLPLK-----TLLVQLELRQI 407
>gi|332535648|ref|ZP_08411409.1| ATP-dependent DNA helicase, RecQ family [Pseudoalteromonas
haloplanktis ANT/505]
gi|332034948|gb|EGI71472.1| ATP-dependent DNA helicase, RecQ family [Pseudoalteromonas
haloplanktis ANT/505]
Length = 642
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 192/588 (32%), Positives = 289/588 (49%), Gaps = 61/588 (10%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 13 FGFSQFRTGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPNLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G IKVL VS ERF N F + +L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKNERFREFISQVAL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMAERFA 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
I ++Q R NL LSV S+ ++ E + V + + Y LQ S +
Sbjct: 190 ISPECIVQTGFYRANLDLSVLSVKTADKNTELTNIVS---AQNGPGIVYVTLQQSAEQ-- 244
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
++ L + +YH+G+ R +IQ+ F + KI VVVAT+AFGMG+DK D+ V
Sbjct: 245 ---VANVLSAQGVHAVAYHAGLEDTLRWQIQDDFMAGKINVVVATIAFGMGVDKSDIRFV 301
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD-----GVDEYAIN 549
IHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D G+ EY IN
Sbjct: 302 IHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGI-EYVIN 360
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEI--QYLQLLPEL 606
SH + + + S S + +I++ + TLL LE+ G I QY +
Sbjct: 361 DI--------RQSHQQ-WEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQY-AYYADF 410
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQ--GQYVFDIPTVANSIGATTIDVSNQ 664
K ++ ++ + + I ++ K+ G FD T A + + +
Sbjct: 411 KYKFLVDKNELLSQFDQQRQAFLTQIFSHTDFKKIWGTLNFDSLTQAAQVDRKRVVAA-- 468
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRK---LDRMFH 721
L L + IT E K Y + + L+ L + S+ E ++++ L R F
Sbjct: 469 LDYLAEKNLITLETKRITQVYKVHSEVINNPELAQQLHDYFSDKEQAEIKRIAALVRFFE 528
Query: 722 AAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL N+ YF D+ + P + G S
Sbjct: 529 L-------------------QSCLSYNLARYF---DDQNAPQQCGHCS 554
>gi|343500608|ref|ZP_08738498.1| aTP-dependent DNA helicase RecQ family protein [Vibrio tubiashii
ATCC 19109]
gi|418477341|ref|ZP_13046474.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342819970|gb|EGU54801.1| aTP-dependent DNA helicase RecQ family protein [Vibrio tubiashii
ATCC 19109]
gi|384575081|gb|EIF05535.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 645
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/411 (36%), Positives = 224/411 (54%), Gaps = 19/411 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
++ L+ +G+DS R GQ +AI+ +L+ +S + PTG+GKSLCYQ+PA +LP LTLVV
Sbjct: 9 DIAYTLQHTFGFDSLRGGQQQAIETILEGRSCAAIFPTGSGKSLCYQLPATLLPNLTLVV 68
Query: 248 CPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQL L I + SSQ EE + + ++ G IK+L +S ER N F
Sbjct: 69 SPLLALMKDQLAFLHSKQIPAASIDSSQSREETLQVMEQVRRGEIKILMISVERLKNERF 128
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
F + ISL+VVDEAHC+SEW HNFRP Y++L L + L +TATAT +
Sbjct: 129 RQ-FISQVPISLLVVDEAHCISEWGHNFRPDYLKLPQYL--KEFQIPQALLLTATATQSV 185
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH--YY 424
+ D+ I +L+ R NL +SV +++++ + + ++ Y
Sbjct: 186 IEDMRDKFSIAKQDLVVTGFYRANLDISVVPC---EEDDKAEQLLNLIGPEPTAPTVVYV 242
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
LQ + + +++ L ++ +YH+G+ R IQ+ F +I +VAT+AFGM
Sbjct: 243 TLQQTA-----ETVAKQLLKGGVNAHAYHAGMKPDVRESIQDQFMRGEIDCIVATIAFGM 297
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD 544
G+DK D+ +IH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 298 GVDKSDIRRIIHFDLPKSIENYAQEIGRAGRDGKPSQCILLANQNGLSTLENFVYGDTPE 357
Query: 545 EYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELG 595
I+ L Q N L L E+ R+ +K TLL +E+
Sbjct: 358 LGDIDSVLKQAIENTPQWEVVLSRLSTETNIRQLPLK-----TLLVYMEMA 403
>gi|262393490|ref|YP_003285344.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
gi|262337084|gb|ACY50879.1| aTP-dependent DNA helicase RecQ family [Vibrio sp. Ex25]
Length = 641
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 231/412 (56%), Gaps = 15/412 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA +LP LTLV
Sbjct: 4 DSLHQTLQSVFGFDSLRQGQQPVIEAVMNGYSAAAIFPTGSGKSLCYQLPATVLPNLTLV 63
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQL L I + SSQ EE + ++ G IK+L +S ER N
Sbjct: 64 ISPLLALMKDQLNFLQSKGIPAASIDSSQSREESQRVMAGVKNGQIKILMISVERLKNER 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F F ISL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 124 FRE-FIRQVPISLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQSLLLTATATPA 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D+ +I ++ R NL +SV + E + E+ + S K I
Sbjct: 181 VIEDMKQKFDIASEHITVTGFYRPNLDISVIPCEEATKQE---VLSELIA--SSPKLPTI 235
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ ++ + + +++ L I+ +YH+G+ + R +IQ+ F ++I +VAT+AFGMG
Sbjct: 236 VYVTQQQ-TAEQVAKSLIHIGINAHAYHAGMKSDIREQIQQQFMDSQIDCIVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 295 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEL 354
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
+IN + Q H +V SR+ +I++ + TLL LEL ++
Sbjct: 355 TSINYVVEQA-----KEHAPQWEVVPLRLSRESNIRQLPLKTLLVYLELHKL 401
>gi|359438972|ref|ZP_09228953.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20311]
gi|358026358|dbj|GAA65202.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20311]
Length = 642
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 187/587 (31%), Positives = 285/587 (48%), Gaps = 59/587 (10%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G++ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 13 FGFNQFRAGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPHLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G IKVL VS ERF N F +L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRSGKIKVLMVSVERFKNERFREFINQVAL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMAERFA 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKH----YYILQISG 430
I ++Q R NL LSV S+ ++ E + V R+ Y LQ S
Sbjct: 190 IEPQCIVQTGFYRANLDLSVLSVKTADKNTELTKIV-------RAQTGPGIVYVTLQQSA 242
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ L + +YH+G+ R +IQ+ F + KI VVVAT+AFGMG+DK D
Sbjct: 243 EQ-----VANMLSAQGLQAVAYHAGLEDTLRGQIQDDFMAGKINVVVATIAFGMGVDKSD 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D + I
Sbjct: 298 IRFVIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGIEH 357
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEI--QYLQLLPELK 607
+ N + + + + S S + +I++ + TLL LE+ G I QY + K
Sbjct: 358 VI-----NDIRQAQQQWEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQY-AYYADFK 411
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQ--GQYVFDIPTVANSIGATTIDVSNQL 665
++ + + + I ++ K+ G FD T A + + + L
Sbjct: 412 YKFLVDKSELLSQFDQQRQAFLTQIFSHTDFKKIWGTLNFDSLTQAAQVDRKRVVAA--L 469
Query: 666 LNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRK---LDRMFHA 722
L + IT E K Y + + L+ L + ++ E ++++ L R F
Sbjct: 470 DYLAEKNLITLETKRITQVYKVHSEVINNIELAQQLHDYFTDKEQAEIKRIAALVRFFEL 529
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL N+ YF D+ + P + G S
Sbjct: 530 -------------------QSCLSYNLARYF---DDANAPQQCGHCS 554
>gi|359456455|ref|ZP_09245616.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20495]
gi|358046570|dbj|GAA81865.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20495]
Length = 642
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 193/591 (32%), Positives = 288/591 (48%), Gaps = 67/591 (11%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 13 FGFSQFRTGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPNLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G IKVL VS ERF N F + +L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKNERFREFISQVAL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMAERFA 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKH----YYILQISG 430
I ++Q R NL LSV S+ ++ E + V R+ Y LQ S
Sbjct: 190 ISPECIVQTGFYRANLDLSVLSVKTADKNTELTNIV-------RAQSGPGIVYVTLQQSA 242
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ L I +YH+G+ R +IQ+ F + KI VVVAT+AFGMG+DK D
Sbjct: 243 EQ-----VANVLSAQGIHAVAYHAGLEDTLRWQIQDDFMAGKINVVVATIAFGMGIDKSD 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD----EY 546
+ VIHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D + EY
Sbjct: 298 IRFVIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGIEY 357
Query: 547 AINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEI--QYLQLL 603
IN SH + + + S S + +I++ + TLL LE+ G I QY
Sbjct: 358 VINDI--------RQSHQQ-WEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQY-AYY 407
Query: 604 PELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQ--GQYVFDIPTVANSIGATTIDV 661
+ K ++ ++ + + I ++ K+ G FD T A + +
Sbjct: 408 ADFKYKFLVDKNELLSQFDQQRQAFLTQIFSHTDFKKIWGTLNFDSLTQAAQVDRKRVVA 467
Query: 662 SNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRK---LDR 718
+ L L + IT E K Y + + L+ L + S+ E ++++ L R
Sbjct: 468 A--LDYLAEKNLITLETKRITQVYKVHGEVINNPELAQQLHDYFSDKEQAEIKRIAALVR 525
Query: 719 MFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
F CL N+ YF D+ + P + G S
Sbjct: 526 FFEL-------------------QSCLSYNLARYF---DDQNAPEQCGHCS 554
>gi|149907863|ref|ZP_01896531.1| ATP-dependent DNA helicase RecQ [Moritella sp. PE36]
gi|149808869|gb|EDM68800.1| ATP-dependent DNA helicase RecQ [Moritella sp. PE36]
Length = 637
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 198/640 (30%), Positives = 306/640 (47%), Gaps = 57/640 (8%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
L + L+ +GYD FR+GQ I ++ S+ + PTG+GKSLCYQI A+ LP LTLV+
Sbjct: 2 LHQTLQHYFGYDQFREGQEAVINSIVSGNSSAAIFPTGSGKSLCYQISALHLPNLTLVIS 61
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL+AL+ DQL L + + SS +EV ET+ ++ G +K+L +S ER N F
Sbjct: 62 PLLALIQDQLLFLKKHNVAAAKIDSSMSVDEVRETMSKVREGEVKILMISVERLKNERFR 121
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
F ISL+V+DEAHC+SEW HNFRP Y++L + LN++ L +TATAT +
Sbjct: 122 R-FIKQVPISLLVIDEAHCISEWGHNFRPDYLKLPQ--YQKELNIKQALLLTATATPAVI 178
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+D+ + I ++IQ R NL L + ++ + + + + ++ + ++S Y L
Sbjct: 179 KDMETKFNIKPEDIIQTGFHRANLSLLMHPIAQDKKLHALTRWLGK--KAGQASIVYVTL 236
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
Q + + ++ L I +YH+G+P + R +Q+ F N I +VAT+AFGMG+
Sbjct: 237 QRTAEE-----LASALQQTGIEAVAYHAGMPTEIREEVQQKFMRNGIDCIVATIAFGMGI 291
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK ++ V+H+ LP+S+E Y QEIGRAGRDG S C + + L + +Y D +
Sbjct: 292 DKSNIRNVVHFDLPKSIENYSQEIGRAGRDGNDSQCLVLANLDNQSILENFVYGDTPELN 351
Query: 547 AINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPEL 606
I L ++ G L L S R+ +K TLL LE+ I ++ L
Sbjct: 352 GIETVLSEIQAAGTEWEHTLYGLSMSSNLRQAPLK-----TLLVYLEMQGI--IKPLYSY 404
Query: 607 KVTCTLNFHKTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS 662
F K +L +K + I S K+ + ++ V
Sbjct: 405 FAEYRFKFLKDPAQILNQFNDEKRVFIEEIFNASPAKRTWATVNFERMSEGYQEQRSRVI 464
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L L R I E K Y I+ D L+ L + + E +++++ HA
Sbjct: 465 TALEFLHERNNIVLESKLMTDVYQILNSRFDSQQLAETLHQQFANKEQSEIKRV----HA 520
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD-------NCDV-PNKIGQ-----SS 769
+ + CL K + YF GDD C V +I Q S
Sbjct: 521 VGQYIQSSQ------------CLSKGLSTYF-GDDKAPEQCGTCSVCQGRIAQLPQPASM 567
Query: 770 PFLRADIKVFL-QSNLNA---KFTPRAVARILHGIASPAY 805
P L + V L Q+ +NA + TP + R L GI++P +
Sbjct: 568 PPLSIEHVVELSQAFINACGKQPTPVLITRFLSGISTPLF 607
>gi|433658414|ref|YP_007275793.1| ATP-dependent DNA helicase, RecQ family [Vibrio parahaemolyticus
BB22OP]
gi|432509102|gb|AGB10619.1| ATP-dependent DNA helicase, RecQ family [Vibrio parahaemolyticus
BB22OP]
Length = 641
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 151/412 (36%), Positives = 231/412 (56%), Gaps = 17/412 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA +LP LTLV+
Sbjct: 5 QLLQTLQSVFGFDSLRQGQQPVIESVMNGYSAAAIFPTGSGKSLCYQLPATMLPNLTLVI 64
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQL L I + SSQ EE + ++ G IK+L +S ER N F
Sbjct: 65 SPLLALMKDQLSFLQSKGIAAASIDSSQSREEAQRVMVGVKNGEIKILMISVERLKNERF 124
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
F ISL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 125 RE-FIRQVPISLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQTLLLTATATPAV 181
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH-RSSKHYYI 425
+ D+ + +I ++ R NL +SV ++E+ ++ + + R Y+
Sbjct: 182 IEDMKNKFDIASDHITVTGFYRSNLDISVIPC---EESEKQTQLNTIVAAAPRLPTIVYV 238
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
Q + +++ L ++ +YH+G+ ++ R +IQ+ F + +I +VAT+AFGMG
Sbjct: 239 TQ----QQTAEQVAKSLIHIGVNAHAYHAGMKSEVREQIQQQFMAGQIDCIVATIAFGMG 294
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + ++ D +
Sbjct: 295 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVFGDTPER 354
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
+I+ L Q+ H +V SR+ +I++ + TLL LEL ++
Sbjct: 355 SSISYVLGQI-----KEHQPQWEVVPLRLSRESNIRQLPLKTLLVYLELAKV 401
>gi|359444906|ref|ZP_09234669.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20439]
gi|358041277|dbj|GAA70918.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20439]
Length = 642
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 184/595 (30%), Positives = 287/595 (48%), Gaps = 75/595 (12%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G++ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 13 FGFNQFRAGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPHLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G +KVL VS ERF N F + +L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRSGKVKVLMVSVERFKNERFREFISQVAL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMAERFA 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKH----YYILQISG 430
I ++Q R NL LSV S+ ++ E + V R+ Y LQ S
Sbjct: 190 IEPQCIVQTGFYRANLDLSVLSVKTADKNTELTKIV-------RAQTGPGIVYVTLQQSA 242
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ L + +YH+G+ R +IQ+ F + KI VVVAT+AFGMG+DK D
Sbjct: 243 EQ-----VANMLSAQGLQAVAYHAGLEDTLRGQIQDDFMAGKINVVVATIAFGMGVDKSD 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D + I
Sbjct: 298 IRFVIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGIEH 357
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-----------GEIQY 599
+ N + + + + S S + +I++ + TLL LE+ + +Y
Sbjct: 358 VI-----NDIRQAQQQWEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQYAYYADFKY 412
Query: 600 LQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQ--GQYVFDIPTVANSIGAT 657
L+ + ++ C + + + I ++ K+ G FD T A +
Sbjct: 413 KFLVDKSELLCQFD---------QQRQAFLTQIFSHTDFKKIWGTLNFDSLTQAAQVDRK 463
Query: 658 TIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRK-- 715
+ + L L + IT E K Y + + L+ L + ++ E ++++
Sbjct: 464 RVVAA--LDYLAEKNLITLETKRITQVYKVHSEVINNIELAQQLHDYFTDKEQAEIKRIA 521
Query: 716 -LDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
L R F CL N+ YF D+ + P + G S
Sbjct: 522 ALVRFFEL-------------------QSCLSYNLARYF---DDANAPQQCGHCS 554
>gi|254229503|ref|ZP_04922917.1| Superfamily II DNA helicase [Vibrio sp. Ex25]
gi|151937968|gb|EDN56812.1| Superfamily II DNA helicase [Vibrio sp. Ex25]
Length = 677
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 154/412 (37%), Positives = 231/412 (56%), Gaps = 15/412 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L + L+ V+G+DS R GQ I+ V++ S + PTG+GKSLCYQ+PA +LP LTLV
Sbjct: 40 DSLHQTLQSVFGFDSLRQGQQPVIEAVMNGYSAAAIFPTGSGKSLCYQLPATVLPNLTLV 99
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL+ALM DQL L I + SSQ EE + ++ G IK+L +S ER N
Sbjct: 100 ISPLLALMKDQLNFLQSKGIPAASIDSSQSREESQRVMAGVKNGQIKILMISVERLKNER 159
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F F ISL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT
Sbjct: 160 FRE-FIRQVPISLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNIPQSLLLTATATPA 216
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D+ +I ++ R NL +SV + E + E+ + S K I
Sbjct: 217 VIEDMKQKFDIASEHITVTGFYRPNLDISVIPCEEATKQE---VLSELIA--SSPKLPTI 271
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ ++ + + +++ L I+ +YH+G+ + R +IQ+ F ++I +VAT+AFGMG
Sbjct: 272 VYVTQQQ-TAEQVAKSLIHIGINAHAYHAGMKSDIREQIQQQFMDSQIDCIVATIAFGMG 330
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 331 VDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEL 390
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
+IN + Q H +V SR+ +I++ + TLL LEL ++
Sbjct: 391 TSINYVVEQA-----KEHAPQWEVVPLRLSRESNIRQLPLKTLLVYLELHKL 437
>gi|330501342|ref|YP_004378211.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina NK-01]
gi|328915628|gb|AEB56459.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina NK-01]
Length = 638
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 173/543 (31%), Positives = 266/543 (48%), Gaps = 21/543 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+D R GQ I VL +S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 4 LKRVFGFDKLRPGQEAVISAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVISPLLA 63
Query: 253 LMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q E+ E + + G +K+L +S ER N F + F
Sbjct: 64 LMQDQLAFLHAHGIAAASIDSAQSREQAMEVMNRARSGELKILMISVERLKNERFRN-FI 122
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + + + +L +TATAT + D+
Sbjct: 123 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFGIAQVLLLTATATPKVIADMR 180
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH-YYILQISG 430
I ++++ R NL L V + +R + + + R Y+ Q
Sbjct: 181 EKFAIAEADVVTTGFYRPNLNLLVEPVPGGAKMQR---LQQWLAPRRGQASIVYVTQ--- 234
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ +L + ++V +YH+G+ + R IQ F + ++ +VAT+AFGMG+DKRD
Sbjct: 235 -QKTAEQVAEHLARDGLAVSAYHAGMAHEVRESIQRRFMAGELECIVATIAFGMGIDKRD 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + L + +Y D + I
Sbjct: 294 IRNVVHFDLPKSVENYSQEIGRAGRDGQASDCLVLASRDGLSVLENFVYGDTPELSGIRA 353
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI---QYLQLLPELK 607
L + G G L+ S +I+ + TLL LEL I +Y E +
Sbjct: 354 VLDDLRVVGT---GGQWELMLNQLSELSNIRALPLKTLLVQLELRGIIAPRY-AYFAEYR 409
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
L+ ++ + V IL S+ + D + GA V L
Sbjct: 410 FKLLLDDEALLGQFEGERRQFVEAILACSKRARTWSTLDFDALYQQYGAERARVVKALDY 469
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAV 727
+ RG + E K Y +++ D AL+ L E ++ ++ M A+F
Sbjct: 470 FQERGWLELESKQMTEVYAVLDGDFDVDALANDLHAHFRSHEASEIARIQAML--ALFES 527
Query: 728 DVC 730
+ C
Sbjct: 528 NEC 530
>gi|414071180|ref|ZP_11407153.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. Bsw20308]
gi|410806358|gb|EKS12351.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. Bsw20308]
Length = 642
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 227/409 (55%), Gaps = 36/409 (8%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 13 FGFSQFRTGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPNLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G IKVL VS ERF N F + +L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKNERFREFISQVAL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMAERFA 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKH----YYILQISG 430
I ++Q R NL LSV S+ ++ E + V R+ Y LQ S
Sbjct: 190 ISPECIVQTGFYRANLDLSVLSVKTADKNTELTNIV-------RAQSGPGIVYVTLQQSA 242
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ L I +YH+G+ R +IQ+ F + KI VVVAT+AFGMG+DK D
Sbjct: 243 EQ-----VANVLSAQGIHAVAYHAGLEDTLRWQIQDDFMAGKINVVVATIAFGMGVDKSD 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD-----GVDE 545
+ VIHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D G+ E
Sbjct: 298 IRFVIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGI-E 356
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
Y IN SH + + + S S + +I++ + TLL LE+
Sbjct: 357 YVINDI--------RQSHQQ-WEMQEYSLSSESNIRQLALKTLLVQLEM 396
>gi|392535694|ref|ZP_10282831.1| putative helicase (recQ-like) protein [Pseudoalteromonas arctica A
37-1-2]
Length = 642
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 157/405 (38%), Positives = 227/405 (56%), Gaps = 28/405 (6%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 13 FGFSQFRTGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPNLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G IKVL VS ERF N F + +L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKNERFREFISQVAL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMAERFA 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
I ++Q R NL LSV S+ ++ E + V + + Y LQ S +
Sbjct: 190 IAPECIVQTGFYRANLDLSVLSVKTADKNTELTNIVR---AQNGPGIVYVTLQQSAEQ-- 244
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
++ L + +YH+G+ R +IQ+ F + KI VVVAT+AFGMG+DK D+ V
Sbjct: 245 ---VANVLSAQGVHAVAYHAGLEDTLRWQIQDDFMAGKINVVVATIAFGMGVDKSDIRFV 301
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD-----GVDEYAIN 549
IHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D G+ EY IN
Sbjct: 302 IHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGI-EYVIN 360
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
SH + + + S S + +I++ + TLL LE+
Sbjct: 361 DI--------RQSHQQ-WEMQEYSLSSESNIRQLALKTLLVQLEM 396
>gi|392311012|ref|ZP_10273546.1| putative helicase (recQ-like) protein [Pseudoalteromonas citrea
NCIMB 1889]
Length = 663
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 179/579 (30%), Positives = 281/579 (48%), Gaps = 42/579 (7%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ +FR GQ + I +L +KS++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 30 FGFATFRTGQQQTITQLLAEKSSLAIFPTGSGKSLCYQLTALHLPNLTLVVSPLLALMQD 89
Query: 257 QLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I L S+Q + ++ I+ G IK+L VS ERF N F F
Sbjct: 90 QIDFLQRKGIAAASLDSTQSKLQSQAVMQGIRKGEIKILMVSVERFKNERFRE-FIKQVP 148
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
+S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT D+
Sbjct: 149 VSMMVVDEAHCISEWGHNFRPDYLKLPD--YRRALNIPLVLLLTATATKKVKNDMAEKFH 206
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI-LQISGKHFE 434
I ++++Q R NL ++V ++E+ Y+ + Y+ LQ +H
Sbjct: 207 IEPAHIVQTGFYRSNLDINVL---AQTEDEKIPYLVRSIKEQSGAGIVYVTLQQQAEH-- 261
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
+++ L I +YH+G+ + R +Q+ F N+ +VVVAT+AFGMG+DK D+ V
Sbjct: 262 ---VAKQLQAAGIKAAAYHAGLGDETRQNVQKAFMQNQQQVVVATIAFGMGVDKSDIRFV 318
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVDEYAINKFL 552
IH+ LP+S+E Y QEIGRAGRDG S C + LD I + + +Y D + + +
Sbjct: 319 IHFDLPKSIENYSQEIGRAGRDGAPSRCTVLANLDGIA--TVENFVYGDTPELSGVQTVI 376
Query: 553 CQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQ--LLPELKVTC 610
+ N + L + S+ +I+ + TLL LE+ + Q + ++
Sbjct: 377 DTISAEQQNGRWDMQEL---ALSKTSNIRVLALKTLLVQLEMQGVLTAQYAYYADFRIKL 433
Query: 611 TLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKM 670
+ K ++ + + + + K+ DI + G V + L L
Sbjct: 434 LHSEQKIYAKFNPERQQFLQQVFAAIQFKKVWGTVDISALVAQ-GVNRERVVSALDYLHE 492
Query: 671 RGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVC 730
+G + E K Y + + AL L + E ++R++ M F +D
Sbjct: 493 QGLVELESKRVMQVYDVNMALLEQSALVEQLYGYFKSKEQSELRRIGAMIR--FFELD-- 548
Query: 731 EKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL N+ YF D+ +VP G S
Sbjct: 549 ------------RCLSANLAKYF---DDTNVPEACGHCS 572
>gi|404402208|ref|ZP_10993792.1| ATP-dependent DNA helicase RecQ [Pseudomonas fuscovaginae UPB0736]
Length = 650
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 177/546 (32%), Positives = 277/546 (50%), Gaps = 27/546 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FRDGQ + VL +S + PTG+GKSLCYQ+PA++LP LTLVV PL+A
Sbjct: 5 LQRVFGYPQFRDGQEAVVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S Q +E + + G +K+L +S ER N F F
Sbjct: 65 LMQDQLAFLQRHGIAAASIDSVQSRDETHAVMVRARSGELKILMISVERLKNERFRH-FL 123
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y++L + + + L +TATAT + D+
Sbjct: 124 QQVQISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFRIPQALLLTATATPKVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I +++ R NL L V +SG +++ ++ V + S Y LQ +
Sbjct: 182 GKFAIAPDDVVTTGFYRSNLNLLVEPVSGPDKRRRLVEWL--VPRSGQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I+ +L +I+ +YH+G+P + R IQ+ F + ++ +VAT+AFGMG+DK D
Sbjct: 240 EQ-----IAEHLSQRAIAAHAYHAGLPHEQREAIQKQFMAGQLNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + + + L + +Y D + I +
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELEGIRR 354
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTC 610
L ++ G ++ G+ L+ A + +I++ + TLL LEL + + P
Sbjct: 355 VLDEL--QGASADGQWEFLLGPLADQS-NIRQLPLKTLLVQLELRGL----IAPRYAYFA 407
Query: 611 TLNFH-KTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
F P +L ++ VA I++ S + + + A V
Sbjct: 408 EYRFKFLVEPEVLLAKFEGERRDFVAAIIQTSSRARTWATVNFDVLYQQHQAERGRVVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L + R I E K Y+++ D ALS L ++ E ++ ++ M A+
Sbjct: 468 LDFFQERRWIELESKQMTEVYSLLVSDFDPHALSLELYACFAQHEVSEIARIHAML--AL 525
Query: 725 FAVDVC 730
FA + C
Sbjct: 526 FATEQC 531
>gi|359450372|ref|ZP_09239820.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20480]
gi|358043806|dbj|GAA76069.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20480]
Length = 642
Score = 248 bits (634), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 192/588 (32%), Positives = 290/588 (49%), Gaps = 61/588 (10%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G++ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ AM L LTLVV PL+ALM D
Sbjct: 13 FGFNQFRAGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTAMHLENLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G IKVL VS ERF N F + +L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKNERFREFISQVAL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMSERFN 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
I ++Q R NL LSV S+ ++ E + V + + Y LQ S +
Sbjct: 190 IAPECIVQTGFYRANLDLSVLSVKTADKNTELTNIVR---AQNGPGIVYVTLQQSAEQ-- 244
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
++ L + +YH+G+ R +IQ+ F + KI VVVAT+AFGMG+DK D+ V
Sbjct: 245 ---VANMLSAQGLQAVAYHAGLEDTLRGQIQDDFMAGKINVVVATIAFGMGVDKSDIRFV 301
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD-----GVDEYAIN 549
IHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D G+ EY IN
Sbjct: 302 IHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGI-EYVIN 360
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEI--QYLQLLPEL 606
+ + + + S S + +I++ + TLL LE+ G I QY +
Sbjct: 361 D---------IRQAQQQWEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQY-AYYADF 410
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQ--GQYVFDIPTVANSIGATTIDVSNQ 664
K ++ ++ + + I ++ K+ G FD T A + + +
Sbjct: 411 KYKFLVDKNELLSQFDEQRQTFLTQIFSHTDFKKIWGTLNFDTLTQAAQVDRKRVVAA-- 468
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRK---LDRMFH 721
L L + IT E K Y + + L+ L + +E E ++++ L R F
Sbjct: 469 LDYLAEKNLITLETKRITQVYKVHSEVINNPELAQQLHHYFAEKEQAEIKRIAALVRFFE 528
Query: 722 AAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
L T CL N+ YF D+ + P + G S
Sbjct: 529 ------------------LQT-CLSYNLARYF---DDQNAPVQCGHCS 554
>gi|153000780|ref|YP_001366461.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS185]
gi|151365398|gb|ABS08398.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica OS185]
Length = 662
Score = 248 bits (634), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 197/332 (59%), Gaps = 11/332 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+ FR GQ + I +L KS++ + PTG+GKSLCYQ A+ LP L+LV+ PL+
Sbjct: 14 LLQQDFGFSEFRPGQAQTITQLLAGKSSLAIFPTGSGKSLCYQFTALQLPHLSLVISPLL 73
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L IH + S+ E+ + + + G +K+L VS ERF N F
Sbjct: 74 ALMKDQLEFLQSKGIHAASIDSTLSAEQSQQVMADARSGKLKILMVSVERFKNERFRQFI 133
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L S++VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT D+
Sbjct: 134 QSVPL-SMLVVDEAHCISEWGHNFRPDYLKLPD--YRRELEIPLVLLLTATATRKVKLDM 190
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+I +++Q R NL L+V +N + V+++ SF + Y LQ +
Sbjct: 191 AKRFDIAPEHIVQTGFYRPNLDLTVLPVSTQEKN--ALLVNQIASFLGAGIVYVTLQQTA 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++R L I +YH+G + R +IQ F +K++VVVAT+AFGMG+DK +
Sbjct: 249 -----ETVARLLSQQGIVASAYHAGFEDEKRQQIQNDFMQDKLQVVVATIAFGMGIDKSN 303
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+ VIHY LP+S+E Y QEIGRAGRDG LS+C
Sbjct: 304 IRFVIHYDLPKSIENYSQEIGRAGRDGALSHC 335
>gi|217973261|ref|YP_002358012.1| RecQ familyATP-dependent DNA helicase [Shewanella baltica OS223]
gi|217498396|gb|ACK46589.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica OS223]
Length = 662
Score = 248 bits (634), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 197/332 (59%), Gaps = 11/332 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+ FR GQ + I +L KS++ + PTG+GKSLCYQ A+ LP L+LV+ PL+
Sbjct: 14 LLQQDFGFSEFRPGQAQTITQLLAGKSSLAIFPTGSGKSLCYQFTALQLPHLSLVISPLL 73
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L IH + S+ E+ + + + G +K+L VS ERF N F
Sbjct: 74 ALMKDQLEFLQSKGIHAASIDSTLSAEQSQQVMADARSGKLKILMVSVERFKNERFRQFI 133
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L S++VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT D+
Sbjct: 134 QSVPL-SMLVVDEAHCISEWGHNFRPDYLKLPD--YRRELEIPLVLLLTATATRKVKLDM 190
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+I +++Q R NL L+V +N + V+++ SF + Y LQ +
Sbjct: 191 AKRFDIAPEHIVQTGFYRPNLDLTVLPVSTQEKN--ALLVNQIASFSGAGIVYVTLQQTA 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++R L I +YH+G + R +IQ F +K++VVVAT+AFGMG+DK +
Sbjct: 249 -----ETVARLLNQQGIVASAYHAGFEDEKRQQIQNDFMQDKLQVVVATIAFGMGIDKSN 303
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+ VIHY LP+S+E Y QEIGRAGRDG LS+C
Sbjct: 304 IRFVIHYDLPKSIENYSQEIGRAGRDGALSHC 335
>gi|359441785|ref|ZP_09231671.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20429]
gi|358036287|dbj|GAA67920.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20429]
Length = 642
Score = 248 bits (634), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 158/409 (38%), Positives = 226/409 (55%), Gaps = 36/409 (8%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 13 FGFSQFRTGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPNLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G IKVL VS ERF N F + +L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKNERFREFISQVAL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMAERFA 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKH----YYILQISG 430
I ++Q R NL LSV S+ ++ E + V R+ Y LQ S
Sbjct: 190 IAPECIVQTGFYRANLDLSVLSVKTADKNTELTNIV-------RAQSGPGIVYVTLQQSA 242
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ L + +YH+G+ R +IQ+ F KI VVVAT+AFGMG+DK D
Sbjct: 243 EQ-----VANVLSAQGVHAVAYHAGLEDTLRWQIQDDFMGGKINVVVATIAFGMGVDKSD 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD-----GVDE 545
+ VIHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D G+ E
Sbjct: 298 IRFVIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGI-E 356
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
Y IN SH + + + S S + +I++ + TLL LE+
Sbjct: 357 YVINDI--------RQSHQQ-WEMQEYSLSSESNIRQLALKTLLVQLEM 396
>gi|423206564|ref|ZP_17193120.1| RecQ family ATP-dependent DNA helicase [Aeromonas veronii AMC34]
gi|404622116|gb|EKB18981.1| RecQ family ATP-dependent DNA helicase [Aeromonas veronii AMC34]
Length = 638
Score = 248 bits (634), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 153/407 (37%), Positives = 223/407 (54%), Gaps = 15/407 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +G+ + R GQ I VL +S + PTGAGKSLCYQ+PA+ LP LTLV+ PL+
Sbjct: 5 LLNQYFGFSALRSGQEAVISRVLAGQSAAAIFPTGAGKSLCYQLPALALPHLTLVISPLL 64
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I L SSQ PEE ++ G +K+L +S ER N F
Sbjct: 65 ALMHDQLAFLKSKGISAATLDSSQSPEESRRVMQQALDGQLKILMISVERLKNERFRRFI 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L SL+VVDEAHC+SEW HNFRP Y++L + R L + +L +TATAT ++D+
Sbjct: 125 QQVPL-SLLVVDEAHCISEWGHNFRPDYLKLPS--YRHDLKIPQVLLLTATATPAVIQDM 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I ++ R NL L+V + R +++ + + + I+ ++
Sbjct: 182 QTKFGIAPEGVVVTGFYRPNLDLAVIPLAPD---ARDSWLAQELA--KDPAAPTIVYVTL 236
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H + + L I+ ++YH+G+ + RS+IQ F + K+ +VAT+AFGMG+DK D
Sbjct: 237 QH-TAEACAEQLIREGINARAYHAGLDSALRSQIQHDFMAGKVDCIVATIAFGMGIDKAD 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIHY LP+S+E Y QEIGRAGRDG+ S C + + L + +Y D D AI +
Sbjct: 296 IRRVIHYDLPKSIENYSQEIGRAGRDGQPSRCIVLANQSQLPVLENFVYGDTPDLSAIFQ 355
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
L + +G L L ++ R+ +K TLL LE+ I
Sbjct: 356 LLAIIKQSGSEWEFTLLRLSNDTNIRQLPLK-----TLLVYLEMAGI 397
>gi|37680764|ref|NP_935373.1| DNA helicase [Vibrio vulnificus YJ016]
gi|37199513|dbj|BAC95344.1| DNA helicase [Vibrio vulnificus YJ016]
Length = 704
Score = 248 bits (634), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 148/404 (36%), Positives = 224/404 (55%), Gaps = 15/404 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L ++G+++ R GQ + + VL S + PTG+GKSLCYQ+PA+ LP LTLVV PL+A
Sbjct: 74 LHHIFGFEALRQGQQQVVDAVLSGHSAAAIFPTGSGKSLCYQLPALHLPHLTLVVSPLIA 133
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S Q E+ ++ + G IK+L +S ER N F F
Sbjct: 134 LMKDQLAFLHSKGIAAAAIESGQSKEQTQAIMQAVNAGEIKILMISVERLKNERFRQ-FI 192
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + +A LN+ +L +TATAT + D+
Sbjct: 193 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPS--YQATLNIPQVLLLTATATENVIADMQ 250
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
I N++ R NL L V+ N +++ A + V ++ I+ ++ +
Sbjct: 251 RKFAIKKDNVVVTGFYRANLDLHVTPCRN--EDKADALLKIV---QQAPNAPTIVYVTLQ 305
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
H + ++ L D I +YH+G+ + RS IQ F ++ +VAT+AFGMG+DK ++
Sbjct: 306 HTASQ-VATLLQDEGIRASAYHAGLDNELRSTIQTQFMQGQLDCIVATIAFGMGVDKANI 364
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIH+ LP+S+E Y QEIGRAGRDG+ S C + + L + +Y D + I+
Sbjct: 365 RRVIHFDLPKSIENYAQEIGRAGRDGQKSDCIVLANQSGLSTLENFIYGDTPERDDISSV 424
Query: 552 LCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELG 595
+ Q+ +G + L ++ R+ +K TLL LE+
Sbjct: 425 IQQIQASGERWEVIIARLSNDTNIRQLPLK-----TLLVYLEMA 463
>gi|91079778|ref|XP_967578.1| PREDICTED: similar to rothmund-thomson syndrome DNA helicase recq4
[Tribolium castaneum]
Length = 1368
Score = 248 bits (634), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 193/626 (30%), Positives = 305/626 (48%), Gaps = 68/626 (10%)
Query: 243 LTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
++LV+ PLV+LM DQ+ +P + L ++Q + + + I + VL VSPE +
Sbjct: 573 ISLVISPLVSLMEDQITGIPFFLKAACLHTNQTKVQREKIMEAIASRELDVLLVSPEAVV 632
Query: 303 NAD----FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAM 358
+ F S+ I+ +DEAHCVS+WSHNFRPSY+ + +LR R+ V+ +L +
Sbjct: 633 AGERSSGFGSLLRKLPPIAFACIDEAHCVSQWSHNFRPSYLMI-CRVLRERMGVKTVLGL 691
Query: 359 TATATTTTLRDVMSALEIP--LSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF 416
TATAT +T ++S LEIP + +I L DNL L+VS + +R + + S
Sbjct: 692 TATATRSTSDSIISHLEIPDGRAGIISDKPLPDNLILTVS-----KDYQRDQALLALLSS 746
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDN--------------SISVKSYHSGIPAKDRS 462
R + I+ + E + ++++L N S ++YH+G+ A R
Sbjct: 747 ERFANCKSIIIYCTRREECERVTKFLRTNFRDNEPANKKRKRLSYQAEAYHAGLAASRRR 806
Query: 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+Q+ F S ++R+VVATVAFGMG++K D+ AVIHY++P++ E YVQEIGRAGRDG ++C
Sbjct: 807 TVQKAFMSGELRIVVATVAFGMGINKSDIRAVIHYNMPKNFESYVQEIGRAGRDGLTAHC 866
Query: 523 HLFLD--DITYFRLRSLMYSDGVDEYAINKFLCQVF-----TNGMNSHGKLCSLVKESAS 575
HLFLD LR ++++ +D + I K L ++F + H S+ E
Sbjct: 867 HLFLDAKGNDENELRRHIFANSIDRHVIRKLLQKIFLPCSCKDTCPKHEVAFSI--EETV 924
Query: 576 RKFDIKEEVMLTLLTCLELGEIQYLQLL-PELKVTCTLNFHKTTPTLLADKD----KMVA 630
R DI EE + TLL LEL E +Y++LL P V +++ A K+ M
Sbjct: 925 RALDIPEENISTLLCYLELHEKKYIELLSPAYTVCKVISYGGPLQIRKAAKECPPLAMAL 984
Query: 631 TILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEV 690
+ K + +Q F + +A +IG + ++L NL+ + + K + +
Sbjct: 985 ALQKNEKNEQNVIEFAVIDIAAAIGWDSGICKHKLKNLEW-ATVNGQAKRTTLNVSFSNL 1043
Query: 691 PSDFCALSAHLTKWLSEV-----------ENCKVRKLDRMFHAAVFAVDV-------CEK 732
A + L E E + +L R H + V V E+
Sbjct: 1044 GFRLLAPGNLADEQLDEALDSLYEHVVNQEKTALLQL-RAVHQTLIEVAVPSYKQCLTEE 1102
Query: 733 THGCNGSLHTPCLQKNILDYFRGDDNCD-VPNKIGQ--SSPFLRADIKVFLQSNLNAKFT 789
N L T I DYF + + + K Q + +I+ + + + FT
Sbjct: 1103 PSELNTKLKT-----KIRDYFESPNPLEAISLKENQLVDEDLVVNNIRGLICTYRDNSFT 1157
Query: 790 PRAVARILHGIASPAYPSTIWSKTHF 815
RAVARI HGI+SP YP+ IW + +
Sbjct: 1158 GRAVARIFHGISSPNYPAVIWGRCKY 1183
Score = 45.8 bits (107), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 745 LQKNILDYFRGDDNCDVPN-KIGQ--SSPFLRADIKVFLQSNLNAKFTPRAVARILHGIA 801
L+ I DYF + +V + K Q + +I+ + + + FT RAVARI HGI+
Sbjct: 1271 LKTKIRDYFESPNPLEVISLKENQLVDEDLVVNNIRGLICTYRDNSFTGRAVARIFHGIS 1330
Query: 802 SPAYPSTIWSKTHF 815
SP YP+ IW + +
Sbjct: 1331 SPNYPAVIWGRCKY 1344
>gi|421066751|ref|ZP_15528313.1| ATP-dependent DNA helicase RecQ, partial [Pelosinus fermentans A12]
gi|392453276|gb|EIW30158.1| ATP-dependent DNA helicase RecQ, partial [Pelosinus fermentans A12]
Length = 608
Score = 248 bits (634), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 201/336 (59%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ YGY +FR GQ + I +L KK T+ ++PTGAGKSLC+QIPA++LPG+TLVV PL+
Sbjct: 8 ILKQHYGYTTFRPGQEKIITSLLGKKDTLAIMPTGAGKSLCFQIPALLLPGVTLVVSPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L V I F++SS +V E I + G K+++++PER + F +
Sbjct: 68 SLMKDQVDALNGVGIPATFINSSLTLSQVNERIYNAKCGRYKIIYIAPERLESESFQAAI 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ ISL+ +DEAHCVS+W H+FRPSY R + + + N I A TATATT +D+
Sbjct: 128 KVLT-ISLLAIDEAHCVSQWGHDFRPSY-RAVGTFIASLPNRPIIGAFTATATTDVTQDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
++ L + ++ R+NL +V + G N+Q D + ++K + +
Sbjct: 186 ITLLALRNPDVYMTGFDRENLSFTV-IRGENKQ-------DFTLKYITANKEQSGIIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH+G+P K+R QE F + I ++VAT AFGMG+DK +
Sbjct: 238 TRKEVDNLYSLLYKKGYSVGKYHAGLPDKERQHYQEQFIYDNISIMVATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHY++P+++E Y QE GRAGRDG S C L
Sbjct: 298 VRYVIHYNMPKNMEAYYQEAGRAGRDGEPSECMLLF 333
>gi|413964304|ref|ZP_11403530.1| ATP-dependent DNA helicase RecQ [Burkholderia sp. SJ98]
gi|413926978|gb|EKS66267.1| ATP-dependent DNA helicase RecQ [Burkholderia sp. SJ98]
Length = 611
Score = 248 bits (634), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 137/345 (39%), Positives = 199/345 (57%), Gaps = 11/345 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D L LR V+G+ R GQ + I+ VLD T+ V+PTGAGKSLCYQ+PA+ G+T+
Sbjct: 28 DRELETALRKVFGFPHLRPGQEDVIRSVLDGNDTLAVMPTGAGKSLCYQLPALQFDGMTV 87
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
+V PL++LM DQL L I L+S+ E + ++ I I++LFV+PER ++A
Sbjct: 88 IVSPLISLMRDQLTKLVEAGIATAMLNSTLSASEQRDAMQAIARHEIRMLFVTPERLVDA 147
Query: 305 DFLSIFTATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
+F + TA + I+L V+DEAHC+S+W H+FRP+Y+ L ++ L +LA+TATA
Sbjct: 148 EFTAELTAKDMPPIALAVIDEAHCISQWGHDFRPAYVELIHAI--KTLGRPPVLALTATA 205
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
T + D++ LE+ +N+I RDNL SV N R A E+ + S
Sbjct: 206 TPAVIVDIVRELEMKRANVIHTGVFRDNLHFSVEQLTNPDDRRRRAI--EIATGEAGSGI 263
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y ++ E + + L D + + YH + + RS Q+ F N+ RV+VAT AF
Sbjct: 264 VYCATVA----ECEALHAALVDAGVEAERYHGKLSSGARSSSQDAFMENRARVMVATNAF 319
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GMG+DK D+ VIH +P SL+ Y QE GRAGRDG + C L +
Sbjct: 320 GMGIDKPDIRFVIHAQMPGSLDAYYQEAGRAGRDGETARCTLLFE 364
>gi|196231302|ref|ZP_03130161.1| ATP-dependent DNA helicase, RecQ family [Chthoniobacter flavus
Ellin428]
gi|196224638|gb|EDY19149.1| ATP-dependent DNA helicase, RecQ family [Chthoniobacter flavus
Ellin428]
Length = 644
Score = 248 bits (633), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 192/641 (29%), Positives = 316/641 (49%), Gaps = 64/641 (9%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
LR +G++ FR+GQ ++ +L +S + + PTGAGKSLCYQ+PA++L G LVV PL+A
Sbjct: 7 LRSRFGHEGFREGQEAVVRALLAGESALALFPTGAGKSLCYQLPAVLLEGTALVVSPLIA 66
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I L SS E + ++ G +K+L+V+PER FL
Sbjct: 67 LMKDQVDALRARGIAAARLDSSLSATETQQVYADLRNGTLKLLYVAPERLSGEAFLDRLR 126
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
T ISL+ +DEAHC+SEW HNFRP Y+RL + + L + +LA+TATAT D+
Sbjct: 127 RTR-ISLMAIDEAHCISEWGHNFRPEYLRL--ARVVEELGLHPVLALTATATPEVAADIC 183
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH--RSSKHYYILQIS 429
A I +Q + R NL L ++ ER A + + + R + Y Q +
Sbjct: 184 RAFRIARERHVQTSFRRPNLHLRLTPCAAQ---ERLATLTKRLASAKVRPAVVYVTFQKT 240
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ ++ +L + ++YH+G+ A++R+ QE F + V+VAT+AFGMG+DK
Sbjct: 241 AED-----VAGHLSAAGLRARAYHAGMDAEERTAAQEAFMRGECEVIVATIAFGMGIDKA 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
D+ +VIH++LP++LE Y QEIGRAGRDG+ + C L L + D + A+
Sbjct: 296 DIRSVIHFNLPKTLENYQQEIGRAGRDGQPALCELLACADDAVPLENFTLGDTPESSAVE 355
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQYLQLLPELKV 608
+ ++ +G H + + S + DI+ V+ T++T LEL G +Q ++ E
Sbjct: 356 ALVQRMLGSGEEFH-----ISRYDISHETDIRPLVVETVITYLELEGLLQPTRVFYE--- 407
Query: 609 TCTLNFHKTTPTLL---ADKDKMVATILKKSETKQGQYV-FDIPTVANSIGATTIDVSNQ 664
+ + F + +L D+ + T L S + +Y+ ++ +G + +
Sbjct: 408 STQVQFLRAESAVLEGHTDERRRFLTQLFASGRRGRKYLTLELEASVQKLGESRERIVKA 467
Query: 665 LLNLKMRGEITYELKDPAYCYTIVE--VPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L L+ G I+ + + + + + E V + ++A L + + E R L RM
Sbjct: 468 LSWLEETGAISQKPANIRHGFRLCEAGVTASPAEVAARLAQLFARREE---RDLQRMTGL 524
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYF---RGDDNCDVPN--KIGQ--------SS 769
FA + C+ + +L +F D+NC + + G+ +S
Sbjct: 525 LEFASA-------------SGCITRRLLAHFGEEMADENCGHCHFCRTGEPASHTALPAS 571
Query: 770 P---FLRAD---IKVFLQSNLNAKFTPRAVARILHGIASPA 804
P F D I+ + +PR++ R L G+ SPA
Sbjct: 572 PIPSFSEEDEENIRSLIFEEHAPLASPRSLTRYLCGLTSPA 612
>gi|392537220|ref|ZP_10284357.1| putative helicase (recQ-like) protein [Pseudoalteromonas marina
mano4]
Length = 642
Score = 248 bits (633), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 156/405 (38%), Positives = 226/405 (55%), Gaps = 28/405 (6%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G++ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ AM L LTLVV PL+ALM D
Sbjct: 13 FGFNQFRAGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTAMHLENLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G IKVL VS ERF N F + +L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKNERFREFISQVAL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMSERFN 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
I ++Q R NL LSV S+ ++ E + V + + Y LQ S +
Sbjct: 190 IAPECIVQTGFYRANLDLSVLSVKTADKNTELTNIVR---AQNGPGIVYVTLQQSAEQ-- 244
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
++ L I +YH+G+ R +IQ+ F + KI VVVAT+AFGMG+DK D+ V
Sbjct: 245 ---VANTLSAQGIQAVAYHAGLEDTLRWQIQDDFMAGKINVVVATIAFGMGVDKSDIRFV 301
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD-----GVDEYAIN 549
IHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D G+ EY IN
Sbjct: 302 IHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGI-EYVIN 360
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
+ + + + S S + +I++ + TLL LE+
Sbjct: 361 D---------IRQAQQQWEMQEYSLSSESNIRQLALKTLLVQLEM 396
>gi|406677021|ref|ZP_11084206.1| RecQ family ATP-dependent DNA helicase [Aeromonas veronii AMC35]
gi|404625335|gb|EKB22152.1| RecQ family ATP-dependent DNA helicase [Aeromonas veronii AMC35]
Length = 638
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 223/409 (54%), Gaps = 19/409 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +G+ + R GQ I VL +S + PTGAGKSLCYQ+PA+ LP LTLV+ PL+
Sbjct: 5 LLNQYFGFSALRSGQEAVISRVLAGQSAAAIFPTGAGKSLCYQLPALALPHLTLVISPLL 64
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I L SSQ PEE ++ G +K+L +S ER N F
Sbjct: 65 ALMHDQLTFLKSKGISAATLDSSQSPEESRRVMQQALDGQLKILMISVERLKNERFRRFI 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L SL+VVDEAHC+SEW HNFRP Y++L + R L + +L +TATAT ++D+
Sbjct: 125 QQVPL-SLLVVDEAHCISEWGHNFRPDYLKLPS--YRHDLKIPQVLLLTATATPAVIQDM 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYI-LQI 428
+ I ++ R NL L+V LS + R S E+ + + Y+ LQ
Sbjct: 182 QTKFGIAPEGVVVTGFYRPNLDLAVIPLSPDVRD---SWLAQELANDPTAPTIVYVTLQH 238
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + LI I+ ++YH+G+ + RS+IQ F + K+ +VAT+AFGMG+DK
Sbjct: 239 TAEACAEQLIR-----EGINARAYHAGLDSALRSQIQHDFMAGKVDCIVATIAFGMGIDK 293
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
D+ VIHY LP+S+E Y QEIGRAGRDG+ S C + + L + +Y D D AI
Sbjct: 294 ADIRRVIHYDLPKSIENYSQEIGRAGRDGQPSRCIVLANQSQLPVLENFVYGDTPDLSAI 353
Query: 549 NKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
+ L + +G L L ++ R+ +K TLL LE+ I
Sbjct: 354 LQLLALIKQSGSEWEFTLLRLSNDTNIRQLPLK-----TLLVYLEMAGI 397
>gi|373949565|ref|ZP_09609526.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica OS183]
gi|386324600|ref|YP_006020717.1| RecQ familyATP-dependent DNA helicase [Shewanella baltica BA175]
gi|333818745|gb|AEG11411.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica BA175]
gi|373886165|gb|EHQ15057.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica OS183]
Length = 662
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 196/332 (59%), Gaps = 11/332 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+ FR GQ + I +L KS++ + PTG+GKSLCYQ A+ LP L+LV+ PL+
Sbjct: 14 LLQQDFGFSEFRPGQAQTITQLLAGKSSLAIFPTGSGKSLCYQFTALQLPHLSLVISPLL 73
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L IH + S+ E+ + + + G +K+L VS ERF N F
Sbjct: 74 ALMKDQLEFLQSKGIHAASIDSTLSAEQSQQVMTDARSGKLKILMVSVERFKNERFRQFI 133
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L S++V+DEAHC+SEW HNFRP Y++L R L + +L +TATAT D+
Sbjct: 134 QSVPL-SMLVIDEAHCISEWGHNFRPDYLKLPD--YRRELEIPLVLLLTATATRKVKLDM 190
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+I +++Q R NL L+V +N + V ++ SF + Y LQ +
Sbjct: 191 AKRFDIAPEHIVQTGFYRPNLDLTVLPVSTQEKN--ALLVQQIASFTGAGIVYVTLQQTA 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++R L I +YH+G + R +IQ F +K++VVVAT+AFGMG+DK +
Sbjct: 249 -----ETVARLLIQQGIVASAYHAGFEDEKRQQIQNDFMQDKLQVVVATIAFGMGIDKSN 303
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+ VIHY LP+S+E Y QEIGRAGRDG LS+C
Sbjct: 304 IRFVIHYDLPKSIENYSQEIGRAGRDGALSHC 335
>gi|421074731|ref|ZP_15535756.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans JBW45]
gi|392527173|gb|EIW50274.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans JBW45]
Length = 707
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/337 (40%), Positives = 200/337 (59%), Gaps = 11/337 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ YGY +FR GQ + I +L K T+ ++PTGAGKSLC+QIPA++LPG+TLVV PL
Sbjct: 7 KILKQHYGYTTFRPGQEKIITSLLGNKDTLAIMPTGAGKSLCFQIPALLLPGVTLVVSPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L V I F++SS +V E I + G K+++++PER L +D
Sbjct: 67 ISLMKDQVDALNGVGIPATFINSSLTLSQVNERIYNAKCGRYKIIYIAPER-LESDSFQA 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
ISL+ +DEAHCVS+W H+FRPSY R S + + N I A TATATT +D
Sbjct: 126 AIKVLTISLLAIDEAHCVSQWGHDFRPSY-RAVGSFIASLPNRPIIGAFTATATTDVTQD 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+++ L + ++ R+NL +V + G N+Q D + ++K + +
Sbjct: 185 IITLLALKNPDVYMTGFDRENLSFTV-IRGENKQ-------DFTLKYITANKEQSGIIYA 236
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D + L SV YH+G+P K+R QE F + I ++VAT AFGMG+DK
Sbjct: 237 ATRKEVDNLYSLLYKKGYSVGKYHAGLPDKERQHYQEQFIYDNISIMVATNAFGMGIDKS 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+V VIHY++P+++E Y QE GRAGRDG S C L
Sbjct: 297 NVRYVIHYNMPKNMEAYYQEAGRAGRDGEPSECMLLF 333
>gi|336054183|ref|YP_004562470.1| ATP-dependent DNA helicase RecQ [Lactobacillus kefiranofaciens ZW3]
gi|333957560|gb|AEG40368.1| ATP-dependent DNA helicase RecQ [Lactobacillus kefiranofaciens ZW3]
Length = 591
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 156/404 (38%), Positives = 231/404 (57%), Gaps = 35/404 (8%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N ++L+ +GY SFR GQ + I ++L+K++ + V+PTGAGKSLCYQ+PA+I PG+TLV+
Sbjct: 2 NPEKILKQTFGYASFRPGQKKVIDLILNKQNVLAVMPTGAGKSLCYQVPALINPGVTLVI 61
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L ++ L+S+ EEV +R G IK+++++PER L D+
Sbjct: 62 SPLISLMKDQIDSLKQNGVNAAALNSTTPQEEVNPILRQAYEGKIKLIYITPER-LAMDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
I LV VDEAHC+S+W H+FRP+Y +L + L++R N ILA+TATAT
Sbjct: 121 FRYQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQLLEGINSLKSRPN---ILALTATATP 177
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L IP N + + R NL V N+ QN Y+ + H + +
Sbjct: 178 AVQDDIGQQLNIPKENFVITSFARPNLSFKVV---NSPQNT-PLYIAQYIKKH-ADEAGI 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I + K ET ++ YL ISV +YH G+ A++RS++QE F ++I+++VAT AFGM
Sbjct: 233 IYTNTRKKVET--LTAYLAKKGISVGAYHGGLKAQERSQVQEAFQFDEIQIIVATNAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL------------FLDDI-TY 531
G+DK +V VIH S ++E Y QE GRAGRDG S L F+D+ Y
Sbjct: 291 GIDKSNVRFVIHASSARNIESYYQEAGRAGRDGEESEAILIYHPGDLRQYRYFIDESDAY 350
Query: 532 FRLRSLMYS--DGVDEYA-----INKFLCQVFTNGMNSHGKLCS 568
+ R L Y + +YA + +F+ + F + GK CS
Sbjct: 351 EKYRELQYQKLQSITDYANTGECLQQFIVRYFGQDCSPCGK-CS 393
>gi|386720955|ref|YP_006187280.1| ATP-dependent DNA helicase [Paenibacillus mucilaginosus K02]
gi|384088079|gb|AFH59515.1| ATP-dependent DNA helicase [Paenibacillus mucilaginosus K02]
Length = 694
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/398 (36%), Positives = 223/398 (56%), Gaps = 17/398 (4%)
Query: 130 NGEGNFVRLNLNNNKRKFANKGKRNKSFRGKLSYRRTASELELVEEAVRAVRDEASDENL 189
GEG + R+ + G ++ G RRT+ + A +R A+ E+
Sbjct: 54 GGEGTGAPWT-EGDPREASGGGAWDEPPEGAAP-RRTSRPMR----ASAPLRPTATMEDA 107
Query: 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR YGY FR+GQ I V+ T+ ++PTG GKS+CYQ+PAM++ G T+VV P
Sbjct: 108 QELLRKYYGYPDFREGQKRVIASVISGTDTLGIMPTGGGKSICYQVPAMLMEGTTIVVSP 167
Query: 250 LVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
L++LM DQ+ L + + +L+S+ EV++ IR+ + G K+L+V+PER + FL
Sbjct: 168 LISLMKDQVDGLDSIGVPATYLNSTLSYAEVSKRIRMAEQGEYKLLYVAPERLESERFLE 227
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+ + + + ++ VDEAHCVS+W H+FRPSYMR+ L+ + A TATAT
Sbjct: 228 LLSGLT-VPMIAVDEAHCVSQWGHDFRPSYMRVN-ELVNHLPRRPILAAFTATATDQVRE 285
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D++ L++ + R NL SV + G N+++ Y+ E + + I
Sbjct: 286 DIVKHLKLAEPQVFVTGFARTNLSFSV-VKGENKRDVLMGYIRE-----HADEAGIIYAA 339
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ K E D + YL I+ YH+G+ +R+ +QE F +++RV+VA+ AFGMG+DK
Sbjct: 340 TRK--EVDQLCEYLLRQGIAAGKYHAGLTDTERADMQEKFLYDEVRVMVASNAFGMGIDK 397
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+V VIHY++P+++E Y QE GRAGRDG S C L
Sbjct: 398 SNVRYVIHYNMPKNMEAYYQEAGRAGRDGEPSDCTLLF 435
>gi|119471039|ref|ZP_01613598.1| putative helicase (recQ-like) protein [Alteromonadales bacterium
TW-7]
gi|119445879|gb|EAW27160.1| putative helicase (recQ-like) protein [Alteromonadales bacterium
TW-7]
Length = 642
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 156/405 (38%), Positives = 226/405 (55%), Gaps = 28/405 (6%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G++ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ AM L LTLVV PL+ALM D
Sbjct: 13 FGFNQFRAGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTAMHLENLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G IKVL VS ERF N F + +L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKNERFREFISQVAL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMSERFN 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
I ++Q R NL LSV S+ ++ E + V + + Y LQ S +
Sbjct: 190 IAPECIVQTGFYRANLDLSVLSVKTADKNTELTNIVR---AQNGPGIVYVTLQQSAEQ-- 244
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
++ L I +YH+G+ R +IQ+ F + KI VVVAT+AFGMG+DK D+ V
Sbjct: 245 ---VANTLSAQGIQAVAYHAGLEDTLRWQIQDDFMAGKINVVVATIAFGMGVDKSDIRFV 301
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD-----GVDEYAIN 549
IHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D G+ EY IN
Sbjct: 302 IHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGI-EYVIN 360
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
+ + + + S S + +I++ + TLL LE+
Sbjct: 361 D---------IRQAQQQWEMQEYSLSSESNIRQLALKTLLVQLEM 396
>gi|378708687|ref|YP_005273581.1| RecQ familyATP-dependent DNA helicase [Shewanella baltica OS678]
gi|315267676|gb|ADT94529.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica OS678]
Length = 662
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 196/332 (59%), Gaps = 11/332 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+ FR GQ + I +L KS++ + PTG+GKSLCYQ A+ LP L+LV+ PL+
Sbjct: 14 LLQQDFGFSEFRPGQAQTITQLLAGKSSLAIFPTGSGKSLCYQFTALQLPHLSLVISPLL 73
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L IH + S+ E+ + + + G +K+L VS ERF N F
Sbjct: 74 ALMKDQLEFLQSKGIHAASIDSTLSAEQSQQVMADARSGKLKILMVSVERFKNERFRQFI 133
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L S++VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT D+
Sbjct: 134 QSVPL-SMLVVDEAHCISEWGHNFRPDYLKLPD--YRRELEIPLVLLLTATATRKVKLDM 190
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+I +++Q R NL L+V +N + V ++ SF + Y LQ +
Sbjct: 191 AKRFDIAPEHIVQTGFYRPNLDLTVLPVSTQEKN--ALLVMQIASFSGAGIVYVTLQQTA 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++R L I +YH+G + R +IQ F +K++VVVAT+AFGMG+DK +
Sbjct: 249 -----ETVARLLSQQGIVASAYHAGFEDEKRQQIQNDFMQDKLQVVVATIAFGMGIDKSN 303
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+ VIHY LP+S+E Y QEIGRAGRDG LS+C
Sbjct: 304 IRFVIHYDLPKSIENYSQEIGRAGRDGALSHC 335
>gi|375266449|ref|YP_005023892.1| ATP-dependent DNA helicase RecQ [Vibrio sp. EJY3]
gi|369841769|gb|AEX22913.1| ATP-dependent DNA helicase RecQ [Vibrio sp. EJY3]
Length = 641
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 153/411 (37%), Positives = 227/411 (55%), Gaps = 17/411 (4%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
L + L+ V+G+DS R GQ I+ V+ S + PTG+GKSLCYQ+PA LP LTLV+
Sbjct: 6 LQQTLQSVFGFDSLRSGQQPVIEAVMSGNSAAAIFPTGSGKSLCYQLPATQLPNLTLVIS 65
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL+ALM DQL L I + SSQ EE + + ++ G IK+L +S ER N F
Sbjct: 66 PLLALMKDQLSFLQSRGIAAASIDSSQSREESQKVMAGVKNGQIKILMISVERLKNERFR 125
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
F ISL+VVDEAHC+SEW HNFRP Y++L + LN+ L +TATAT +
Sbjct: 126 E-FIRQIPISLMVVDEAHCISEWGHNFRPDYLKLPQ--YQRELNISQSLLLTATATPAVI 182
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS-SKHYYIL 426
D+ I ++ R NL +SV S +++E+ ++ + + + Y+
Sbjct: 183 DDMQQKFNIASEHITVTGFYRPNLDISVVPS---QESEKQTQLNTIVAAQPTLPTIVYVT 239
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
Q + +++ L I+ +YH+G+ + R +IQ+ F ++I +VAT+AFGMG+
Sbjct: 240 Q----QQTAEQVAKSLIHIGINAHAYHAGMKSDVREKIQQQFMDSQIDCIVATIAFGMGV 295
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C L + L + +Y D +
Sbjct: 296 DKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPERT 355
Query: 547 AINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
+I+ L Q H +V SR +I++ + TLL LEL ++
Sbjct: 356 SISYVLEQA-----REHTPQWEVVPLRLSRDSNIRQLPLKTLLVYLELKKV 401
>gi|392959946|ref|ZP_10325423.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans DSM 17108]
gi|421053587|ref|ZP_15516563.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans B4]
gi|421058239|ref|ZP_15520955.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans B3]
gi|421071053|ref|ZP_15532176.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans A11]
gi|392442012|gb|EIW19625.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans B4]
gi|392447400|gb|EIW24641.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans A11]
gi|392455915|gb|EIW32686.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans DSM 17108]
gi|392461208|gb|EIW37428.1| ATP-dependent DNA helicase RecQ [Pelosinus fermentans B3]
Length = 707
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 201/336 (59%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ YGY +FR GQ + I +L KK T+ ++PTGAGKSLC+QIPA++LPG+TLVV PL+
Sbjct: 8 ILKQHYGYTTFRPGQEKIITSLLGKKDTLAIMPTGAGKSLCFQIPALLLPGVTLVVSPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L V I F++SS +V E I + G K+++++PER + F +
Sbjct: 68 SLMKDQVDALNGVGIPATFINSSLTLSQVNERIYNAKCGRYKIIYIAPERLESESFQAAI 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ ISL+ +DEAHCVS+W H+FRPSY R + + + N I A TATATT +D+
Sbjct: 128 KVLT-ISLLAIDEAHCVSQWGHDFRPSY-RAVGTFIASLPNRPIIGAFTATATTDVTQDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
++ L + ++ R+NL +V + G N+Q D + ++K + +
Sbjct: 186 ITLLALRNPDVYMTGFDRENLSFTV-IRGENKQ-------DFTLKYITANKEQSGIIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH+G+P K+R QE F + I ++VAT AFGMG+DK +
Sbjct: 238 TRKEVDNLYSLLYKKGYSVGKYHAGLPDKERQHYQEQFIYDNISIMVATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHY++P+++E Y QE GRAGRDG S C L
Sbjct: 298 VRYVIHYNMPKNMEAYYQEAGRAGRDGEPSECMLLF 333
>gi|94500061|ref|ZP_01306596.1| RecQ domain protein [Bermanella marisrubri]
gi|94427919|gb|EAT12894.1| RecQ domain protein [Oceanobacter sp. RED65]
Length = 658
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 233/409 (56%), Gaps = 17/409 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G++ FR GQ + I +L+ S++ + PTG+GKSLCYQ A+ LP LTLVV PL+A
Sbjct: 20 LQANFGFNEFRPGQAQTINQLLNGHSSLAIFPTGSGKSLCYQFTALQLPNLTLVVSPLLA 79
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I L SS +E + ++ ++ G+IK+L +S ERF N F F
Sbjct: 80 LMKDQVEFLKQKNIAAASLDSSLSQDEYRQVMQDVRNGSIKILMISVERFKNERFRQ-FI 138
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
T IS++VVDEAHC+SEW HNFRP Y++L + R LN+ L +TATAT RD+
Sbjct: 139 QTVPISMLVVDEAHCISEWGHNFRPDYLKLPS--YRKDLNIPLTLLLTATATKAVKRDMA 196
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNER-SAYVDEVFSFHRSSKHYYILQISG 430
+I +++Q R NL LSV +Q E+ V+++ H S Y LQ S
Sbjct: 197 EKFDIQPEHIVQTGFYRPNLDLSVLPV---KQAEKLPTLVNQIRQQHGSGIVYVTLQHSA 253
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ YL IS +YH+G ++ R IQ F +K++V+VAT+AFGMG+DK +
Sbjct: 254 -----ETVASYLQQCGISATAYHAGFDSEKRQAIQNDFMQDKVQVIVATIAFGMGIDKSN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIHY LP+S+E Y QEIGRAGRDG+ S C + + + +Y D + I
Sbjct: 309 IRFVIHYDLPKSIENYSQEIGRAGRDGQPSNCITLANLDGLNTVENFVYGDTPERSNIQT 368
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLE-LGEIQ 598
+ + S ++ +L + S+ DI+ + TLL LE LG I+
Sbjct: 369 LIQHILDAANGSQWEMQTL---ALSKLCDIRALPLKTLLVQLEILGAIE 414
>gi|167624146|ref|YP_001674440.1| ATP-dependent DNA helicase RecQ [Shewanella halifaxensis HAW-EB4]
gi|167354168|gb|ABZ76781.1| ATP-dependent DNA helicase, RecQ family [Shewanella halifaxensis
HAW-EB4]
Length = 649
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/410 (36%), Positives = 229/410 (55%), Gaps = 8/410 (1%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
+N LL +G+ FR GQ E + VL+ +S + PTG+GKSLCYQ+PA+ LP LTLV
Sbjct: 2 DNALALLNRYFGFSEFRLGQAEVVNHVLNGQSAAAIFPTGSGKSLCYQLPALALPNLTLV 61
Query: 247 VCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL+ALM DQL+ L I + S+Q E+ + I+ + G IK+L +S ER LN +
Sbjct: 62 VSPLLALMDDQLKFLNSKGIPAASIDSTQSNEQSSAVIQGVTEGRIKILMISVER-LNNE 120
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F ++ ISL+V+DEAHC+SEW HNFRP Y++L + +LN+ +L +TATAT
Sbjct: 121 RFRRFISSVPISLLVIDEAHCISEWGHNFRPDYLKLPT--YQRQLNIPQVLLLTATATPK 178
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQL-SVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
+ D+ S I + R NL L +V +S ++ N S ++ + ++
Sbjct: 179 VIEDMGSKFGIKRECITLTGFYRANLNLYAVGISAQDKINYLSGWLGQRQEQSQNKNQSG 238
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ ++ +H + +++ L +YH+G+ + R IQ F + ++ ++VAT+AFGM
Sbjct: 239 IVYVTLQH-TAETVAKALVSRGFDAVAYHAGMDSDKRKAIQNQFMAGEVPIIVATIAFGM 297
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD 544
G+DK D+ V H+ LP+S+E Y QEIGRAGRDG S C + + L + +Y D +
Sbjct: 298 GIDKSDIRFVAHFDLPKSIENYAQEIGRAGRDGLSSDCLVLANRDNLNVLENFVYGDTPE 357
Query: 545 EYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
AI L ++ + G L+ S +I+ + TLL LE+
Sbjct: 358 PSAIEFVLDEIIQ--ASKLGPQWELMLNQLSTASNIRALSLKTLLVYLEM 405
>gi|337744786|ref|YP_004638948.1| ATP-dependent DNA helicase [Paenibacillus mucilaginosus KNP414]
gi|336295975|gb|AEI39078.1| probable ATP-dependent DNA helicase [Paenibacillus mucilaginosus
KNP414]
Length = 694
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/364 (37%), Positives = 212/364 (58%), Gaps = 15/364 (4%)
Query: 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVL 223
RRT+ + A +R A+ E+ LLR YGY FR+GQ I V+ T+ ++
Sbjct: 86 RRTSRPMR----ASAPLRPTATMEDAQELLRKYYGYPDFREGQKRVIASVISGTDTLGIM 141
Query: 224 PTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAET 282
PTG GKS+CYQ+PAM++ G T+VV PL++LM DQ+ L + + +L+S+ EV++
Sbjct: 142 PTGGGKSICYQVPAMLMEGTTIVVSPLISLMKDQVDGLDSIGVPATYLNSTLSYAEVSKR 201
Query: 283 IRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR 342
IR+ + G K+L+V+PER + FL + + + + ++ VDEAHCVS+W H+FRPSYMR+
Sbjct: 202 IRMAEQGEYKLLYVAPERLESERFLELLSGLT-VPMIAVDEAHCVSQWGHDFRPSYMRVN 260
Query: 343 ASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNR 402
L+ + A TATAT D++ L++ + R NL SV + G N+
Sbjct: 261 -ELVNHLPRRPILAAFTATATDQVREDIVKHLKLAEPQVFVTGFARTNLSFSV-VKGENK 318
Query: 403 QNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS 462
++ Y+ E + + I + K E D + YL I+ YH+G+ +R+
Sbjct: 319 RDVLMGYIRE-----HADEAGIIYAATRK--EVDQLCEYLLRQGIAAGKYHAGLTDTERA 371
Query: 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+QE F +++RV+VA+ AFGMG+DK +V VIHY++P+++E Y QE GRAGRDG S C
Sbjct: 372 DMQEKFLYDEVRVMVASNAFGMGIDKSNVRYVIHYNMPKNMEAYYQEAGRAGRDGEPSDC 431
Query: 523 HLFL 526
L
Sbjct: 432 TLLF 435
>gi|388256537|ref|ZP_10133718.1| ATP-dependent DNA helicase RecQ [Cellvibrio sp. BR]
gi|387940237|gb|EIK46787.1| ATP-dependent DNA helicase RecQ [Cellvibrio sp. BR]
Length = 646
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 207/640 (32%), Positives = 300/640 (46%), Gaps = 72/640 (11%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+ +SFR GQ + I +L +S + V PTG GKSLCYQ+PA++L GLTLVV PL+ALM D
Sbjct: 17 FKLNSFRPGQEQVINALLAGRSALAVFPTGGGKSLCYQLPALMLDGLTLVVSPLIALMKD 76
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I L SS EEV I IK+L+VSPER N F+ A
Sbjct: 77 QVDALQALGIAAARLDSSLSKEEVQAIYDGIYQQQIKLLYVSPERLKNERFVQRL-ARCK 135
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
ISL+ +DEAHC+SEW HNFRP Y+ L + L L E +LA+TATAT D+
Sbjct: 136 ISLLAIDEAHCISEWGHNFRPDYLTL--ADLAKTLRAERVLALTATATPAVAADICKQFA 193
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH--------YYILQ 427
I ++ IQ + R NLQL V+ G A +D + S R KH Y LQ
Sbjct: 194 IAQADHIQTSFARPNLQLRVTPCGAE------ARIDLLLS--RLQKHPRNAATIVYVTLQ 245
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + ++ + + YH+G+P +R ++Q F ++ VVVAT+AFGMG+D
Sbjct: 246 KTAEE-----VAAAINAAGLMAVHYHAGLPDDEREQVQNQFMRGEVPVVVATIAFGMGID 300
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVDE 545
K ++ AV H++LP+S+E YVQEIGRAGRDG S C +F DDI L + Y D
Sbjct: 301 KSNIRAVYHFNLPKSIENYVQEIGRAGRDGEPSLCEMFAVADDIRV--LENFTYGDTPTA 358
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQ--LL 603
++ + + T + + S +FD++ V+ T LT LEL + Q
Sbjct: 359 ESLRALVQHLLT-----FDDVFDISTYELSNQFDLRPLVLNTALTYLELRGVISAQSPFY 413
Query: 604 PELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSN 663
E K+ + AD+ + + + D+ TV + + +SN
Sbjct: 414 TEYKIHFLRDHTFILAQFDADRAGFLQRLFAAGRMGRKWLSLDMLTVPEQLQESKERISN 473
Query: 664 QLLNLKMRGEITYELKDPAYCY---TIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMF 720
L L +G I + + Y ++ L +L + +E E R + R+
Sbjct: 474 ALDYLAEQGWIELTVANLRQGYKNNKTMQNADQLAELHHYLEQLFAERE---ARDIQRIH 530
Query: 721 HAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDN---CDVPNKIGQSSPFLRADIK 777
FA + CL + ++ YF G+D C + N + P L +
Sbjct: 531 AVLTFANN-------------PACLSQQLMHYF-GEDGALPCGICNHCRHAQPALMSLPP 576
Query: 778 VF----LQSNLNAKF---------TPRAVARILHGIASPA 804
V Q L A PR +AR L G+ SPA
Sbjct: 577 VLPLTPAQQTLVAGVKREAHVALQQPRQLARFLCGLPSPA 616
>gi|319957274|ref|YP_004168537.1| ATP-dependent DNA helicase recq [Nitratifractor salsuginis DSM
16511]
gi|319419678|gb|ADV46788.1| ATP-dependent DNA helicase RecQ [Nitratifractor salsuginis DSM
16511]
Length = 594
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 204/327 (62%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +G+ FR Q EA+ +L ++ +++LPTG GKSLCYQ+P +++PG+T+VV PL+
Sbjct: 6 ILKRHFGHQGFRPLQEEAVDAILSRRDLLMILPTGGGKSLCYQLPTLMMPGVTIVVSPLL 65
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L + I L S Q EE ET+R ++ G +K+L+V+PER LN DF S
Sbjct: 66 ALMHDQVTALLEMGIPAAMLGSMQSFEEQQETVRRLRRGELKLLYVAPER-LNNDFFSQL 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+T I+ V+DEAHCVSEW H FR Y RL SLLR R I A TATAT D+
Sbjct: 125 LSTLPINFFVIDEAHCVSEWGHEFREDYRRL--SLLRERYPQVPIAAFTATATREVEADI 182
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
S L + ++ + R+NL ++S +R + A + ++ S H+ + +S
Sbjct: 183 ASQLGLRDPVRVRGSLYRENL----TVSARHRVGDGRAQLLDLLSAHKGESGI-VYTLSR 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K +T+ ++ +L S ++H+G+ A++R R+ E F ++KI VVATVAFGMG+DK +
Sbjct: 238 K--QTESLADHLRAKGYSAATFHAGLSAEERRRVYEEFVADKIETVVATVAFGMGIDKSN 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
+ V H SLP+S+E Y QEIGRAGRDG
Sbjct: 296 IRYVAHMSLPKSVENYYQEIGRAGRDG 322
>gi|229827995|ref|ZP_04454064.1| hypothetical protein GCWU000342_00044 [Shuttleworthia satelles DSM
14600]
gi|229792589|gb|EEP28703.1| hypothetical protein GCWU000342_00044 [Shuttleworthia satelles DSM
14600]
Length = 579
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 218/365 (59%), Gaps = 19/365 (5%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R L+ +GY+ FR GQ + + +L+ + + V+PTGAGKS+CYQ+PA+ILPG+T+V+ PL
Sbjct: 6 RTLKRFWGYEDFRPGQEKMVNAILEGRDVLAVMPTGAGKSVCYQLPALILPGVTIVISPL 65
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM+DQ+R L IH +++S+ ++A + G +++V+PER + +F++
Sbjct: 66 ISLMVDQVRALNAAGIHAAYINSALSEHQIALALEYASQGRYDLVYVAPERLFHPEFMT- 124
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTL 367
F T+ ISL+ VDEAHC+S+W +FRPSY+R+R A+ L R + A TATAT
Sbjct: 125 FAVTTEISLIAVDEAHCISQWGQDFRPSYLRIRDFANSLPRR---PVVAAFTATATRRVR 181
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ L++ L+ R NL +V N + A++ E + H+ I+
Sbjct: 182 EDIAKNLQLREPRLLVTGFDRPNLFFAVGHPEN-----KLAWLVEDLTRHKEESA--IIY 234
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L ISV YH+G+ ++R++ QE F +++++++VAT AFGMG+D
Sbjct: 235 CSTRK-KVEEVYEALRQEGISVGRYHAGMEPEERAKSQEDFITDRVQMIVATNAFGMGID 293
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM----YSDGV 543
K DV VIHY++P+S+E Y QE GRAGRDG + L D Y R L+ Y +G+
Sbjct: 294 KPDVRRVIHYNMPQSMENYYQEAGRAGRDGEEAEAILLADAQDYVIARYLLEHKEYPEGM 353
Query: 544 DEYAI 548
+ I
Sbjct: 354 SDADI 358
>gi|374853612|dbj|BAL56515.1| ATP-dependent DNA helicase RecQ [uncultured Bacteroidetes
bacterium]
Length = 717
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/368 (39%), Positives = 209/368 (56%), Gaps = 9/368 (2%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L L +GY SFR Q E I+ +L+ K+ M+++PTGAGKSLCYQ+PA++LPG LVV
Sbjct: 3 DLKEALERYFGYKSFRQPQEEIIRTLLEGKNVMVIMPTGAGKSLCYQLPALLLPGTALVV 62
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM +Q+ + I FL+SS E E R G +K+L+V+PE L+ F
Sbjct: 63 SPLIALMKNQVDQMQAYDIPAAFLNSSLSRREYEEVKRACLQGKVKLLYVAPETLLSESF 122
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ A IS V VDEAHC+SEW H+FRP Y R+R +L L I+A+TATAT
Sbjct: 123 AEVL-AQLQISFVAVDEAHCISEWGHDFRPEYRRIRHAL--RDLPPMPIIALTATATPRV 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
RD++ LEI + + + + R NL ++ +++ A + E+ + RS +
Sbjct: 180 QRDILENLEILDAVVFRTSFNRPNLYYQITPKRSHQ-----ATLKEIVQYIRSRPGQAGI 234
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+ ++ L N I YH+G+ A R+R Q+ F + +I+V+VAT+AFGMG+
Sbjct: 235 VYCHSRRRVEDVANILQANGIKALPYHAGMDAATRTRNQDAFLNEEIQVIVATIAFGMGI 294
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK DV VIH+ +P+S+E Y QE GRAGRDG + C L+ D +L + E
Sbjct: 295 DKPDVRFVIHFDVPKSIENYYQETGRAGRDGLPADCILYYDYNDILKLDRFLKDKPASER 354
Query: 547 AINKFLCQ 554
FL Q
Sbjct: 355 EAIVFLLQ 362
>gi|255525959|ref|ZP_05392885.1| ATP-dependent DNA helicase RecQ [Clostridium carboxidivorans P7]
gi|296188671|ref|ZP_06857059.1| ATP-dependent DNA helicase RecQ [Clostridium carboxidivorans P7]
gi|255510378|gb|EET86692.1| ATP-dependent DNA helicase RecQ [Clostridium carboxidivorans P7]
gi|296046935|gb|EFG86381.1| ATP-dependent DNA helicase RecQ [Clostridium carboxidivorans P7]
Length = 711
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 200/336 (59%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ YGYDSFR+GQ + I +L++K T ++PTGAGKS+CYQIPA+++ G+T+V+ PL+
Sbjct: 8 LLKKYYGYDSFREGQEKVINSILEEKDTFAIMPTGAGKSICYQIPALLMKGITIVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + F++SS E+ E I + G K+L+V+PER + F +
Sbjct: 68 SLMKDQVDALNDIGVKASFINSSLDQYELQERILMAVSGYTKLLYVAPERLESESFCELI 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ IS++ +DE HCVS+W H+FRPSY R A L++ + I A TATAT DV
Sbjct: 128 KTLN-ISMIAIDECHCVSQWGHDFRPSY-RSIAPLIKKLDHRPIISAFTATATNEVKEDV 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L + SN+ R NL SV + G N++ D + + +++ + +G
Sbjct: 186 VKLLGLKESNVYTTGFDRKNLYFSV-VRGENKK-------DYLLKYLENNRDQVGIIYAG 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L SV YH+G+ R++ QE F + + ++VAT AFGMG+DK +
Sbjct: 238 TRKEVDNIYESLKKKGYSVGKYHAGMSDTARTKAQEDFLYDNVNIIVATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHY++P+++E Y QE GRAGRDG S C L
Sbjct: 298 VRYVIHYNIPKNMEAYYQEAGRAGRDGEPSECILLF 333
>gi|448748128|ref|ZP_21729773.1| DNA helicase, ATP-dependent, RecQ type [Halomonas titanicae BH1]
gi|445564249|gb|ELY20373.1| DNA helicase, ATP-dependent, RecQ type [Halomonas titanicae BH1]
Length = 688
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 183/586 (31%), Positives = 281/586 (47%), Gaps = 31/586 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+D FR GQ + VL++ ST + TGAGKSLCYQ+PA+ LP LTLVV PL+A
Sbjct: 27 LKEVFGFDDFRGGQQAVVSRVLERHSTAAIFATGAGKSLCYQLPALHLPHLTLVVSPLLA 86
Query: 253 LMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
LM DQL L HG + S+Q + E + + G +K+L +S ER N F
Sbjct: 87 LMQDQLAFL--ARHGVAAASIDSTQDRDATREVMERAKSGELKILMISVERLKNERFRH- 143
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F ISL+VVDEAHC+SEW HNFRP Y++L + + +L +TATAT + D
Sbjct: 144 FLRQVHISLMVVDEAHCLSEWGHNFRPDYLKL--PDYQRDFAIPQVLLLTATATPAVIAD 201
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ I N+I R NL+L VS + RQ + ++ S+ I+ ++
Sbjct: 202 MGEKFAIAPENVITTGFYRSNLELLVSPAMEGRQQQLINWLKP--QMQPGSEAPTIIYVT 259
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ + +++ L I+ ++YH+G+ ++ R IQ F S + +VAT+AFGMG+DK
Sbjct: 260 LQQ-TAERVAKVLAAQGIAAQAYHAGLDSQRRDEIQRQFMSGESPCIVATIAFGMGIDKG 318
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
D+ V+HY LP+S+E Y QEIGRAGRDG S C L + +Y D + I
Sbjct: 319 DIRNVVHYDLPKSIENYSQEIGRAGRDGLPSTCLTLAGRDGLRVLENFVYGDTPEYAGIY 378
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELK 607
+ L ++ G + + ++ + SR +I+ + TLL LE+ I L E +
Sbjct: 379 RLLEEIAAAG-QAPDRQWEVLLNTLSRDTNIRPLPLKTLLVRLEMHGIIAPRFAFLAEYR 437
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVS----- 662
+ + + ++ V ++ + D + + A ID S
Sbjct: 438 LRYHIEPSELVSRFEGERAAFVRLLVDNIPIARTWGTVDFDRLHQAGQAQQIDASRARVI 497
Query: 663 NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHA 722
L + +G +T E K Y I + AL++ L + E ++ +L M
Sbjct: 498 TALEYFQDKGWLTLEGKRMTDVYEICQPNFTIEALASQLFEDCLNRERIEIERLQAML-- 555
Query: 723 AVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQS 768
A+F +GS T L + D GD D P+ Q
Sbjct: 556 ALFE----------SGSCLTRRLAMHFGDSTFGDSTFDTPSNTEQG 591
>gi|77362040|ref|YP_341614.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas haloplanktis
TAC125]
gi|76876951|emb|CAI89168.1| putative helicase (recQ-like) [Pseudoalteromonas haloplanktis
TAC125]
Length = 648
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 150/401 (37%), Positives = 224/401 (55%), Gaps = 17/401 (4%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G++ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 13 FGFNQFRGGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPHLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ G +KVL VS ERF N F +
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRSGKVKVLMVSVERFKNERFREFINQIA- 131
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
+S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 132 VSMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMAERFA 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYI-LQISGKHF 433
I ++Q R NL LSV S+ ++ E + + S Y+ LQ S +
Sbjct: 190 IAPECIVQTGFYRANLDLSVLSVKTADKNTE----LANIISAQNGPGIVYVTLQQSAEQ- 244
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
++ L + + +YH+G+ R +IQ+ F KI VVVAT+AFGMG+DK D+
Sbjct: 245 ----VANMLSNQGLQAVAYHAGLEDTLRWQIQDDFMGGKINVVVATIAFGMGVDKADIRF 300
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLC 553
VIHY LP+S+E Y QEIGRAGRDG S C + + + +Y D + I +
Sbjct: 301 VIHYDLPKSIENYSQEIGRAGRDGNPSQCFTLANLDGLNTVENFVYGDTPELSGIEHVIN 360
Query: 554 QVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
+ + +S + + + S S +I++ + TLL LE+
Sbjct: 361 DIRQH--HSSQQQWEMQEYSLSSDSNIRQLALKTLLVQLEM 399
>gi|423199916|ref|ZP_17186496.1| RecQ family ATP-dependent DNA helicase [Aeromonas veronii AER39]
gi|404621141|gb|EKB18031.1| RecQ family ATP-dependent DNA helicase [Aeromonas veronii AER39]
Length = 638
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 152/407 (37%), Positives = 224/407 (55%), Gaps = 15/407 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +G+ + R GQ I VL +S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+
Sbjct: 5 LLNQYFGFSALRPGQEAVISRVLAGQSAAAIFPTGSGKSLCYQLPALALPHLTLVISPLL 64
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I L SSQ PEE ++ G +K+L +S ER N F
Sbjct: 65 ALMHDQLAFLKSKGISAATLDSSQSPEESRRVMQQALDGQLKILMISVERLKNERFRRFI 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L SL+VVDEAHC+SEW HNFRP Y++L + R L + +L +TATAT ++D+
Sbjct: 125 QQVPL-SLLVVDEAHCISEWGHNFRPDYLKLPS--YRHDLKIPQVLLLTATATPAVIQDM 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I ++ R NL L+V + R +++ + + ++ I+ ++
Sbjct: 182 QTKFGIAPEGVVVTGFYRSNLDLAVIPLAPD---ARDSWLAQELANDPAAPT--IVYVTL 236
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H + + L I+ ++YH+G+ + RS+IQ F + K+ +VAT+AFGMG+DK D
Sbjct: 237 QH-TAEACAEQLIREGINARAYHAGLDSALRSQIQHDFMAGKVDCIVATIAFGMGIDKAD 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIHY LP+S+E Y QEIGRAGRDG+ S C + + L + +Y D D AI +
Sbjct: 296 IRRVIHYDLPKSIENYSQEIGRAGRDGQPSRCIVLANQSQLPVLENFVYGDTPDLSAILQ 355
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
L + +G L L ++ R+ +K TLL LE+ I
Sbjct: 356 LLAIIKQSGNEWEFTLLRLSNDTNIRQLPLK-----TLLVYLEMAGI 397
>gi|423523321|ref|ZP_17499794.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA4-10]
gi|401171563|gb|EJQ78789.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA4-10]
Length = 705
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 198/335 (59%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + S+L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-SILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
S LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CSTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|402816236|ref|ZP_10865827.1| ATP-dependent DNA helicase RecQ [Paenibacillus alvei DSM 29]
gi|402506140|gb|EJW16664.1| ATP-dependent DNA helicase RecQ [Paenibacillus alvei DSM 29]
Length = 605
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 204/340 (60%), Gaps = 17/340 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ VYGYD FRDGQ + I+ + + T+ ++PTG GKS+CYQIPA++LPG+TLV+ PL++
Sbjct: 11 LQRVYGYDGFRDGQRKIIEYLSAGQDTVGIMPTGGGKSICYQIPALLLPGVTLVISPLIS 70
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + + GF++S+ E + Q G IK+L+V+PER L ++
Sbjct: 71 LMKDQVDALHSLGVKAGFINSTLEMGEAGRLMWQAQEGRIKLLYVAPER-LETEWFRERA 129
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLR---ASLLRARLNVECILAMTATATTTTLR 368
+ IS+V VDEAHCVS+W H+FRPSY + L+ + + A TATAT
Sbjct: 130 KSIPISMVAVDEAHCVSQWGHDFRPSYRTIAPFIQELVHSGRERPIVAAFTATATPEVTE 189
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D++ +LE+ L+ RDNL +V L G R+ YV + RSS+ I
Sbjct: 190 DLIQSLELLEPELVVTGFKRDNLAFTV-LRGEERKAFTLDYVRQ-----RSSESGIIYAS 243
Query: 429 SGKHFET--DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+ K E D++ R I+ YH+G+ ++R+++QE F + +RV+VAT AFGMG+
Sbjct: 244 TRKEVEDIYDMLRR----AGIAAGRYHAGLDDEERAKMQEAFLYDDVRVIVATNAFGMGI 299
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
DK +V V+HY++P+ +E YVQE GRAGRDG S C L
Sbjct: 300 DKSNVRYVLHYNMPKHMEAYVQEAGRAGRDGEPSECVLLF 339
>gi|42600546|dbj|BAD11131.1| RecQ4 homolog [Mus musculus]
Length = 1151
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 144/349 (41%), Positives = 199/349 (57%), Gaps = 22/349 (6%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
GY +FR GQ AI +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 479 GYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLSL 538
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL---SIF 310
M DQ+ LP + L S ++ ++ ++ + VL VSPE + S+
Sbjct: 539 MDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGARGPGSLP 598
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
A L I+ +DE HC+S+WSHNFRP Y+R+ +LR + V C L +TATAT +T R
Sbjct: 599 QAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRV-CKVLREHMGVRCFLGLTATATRSTAR 657
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF---H 417
DV L I L A + NL LSVS+ ++ Q +R +D V +
Sbjct: 658 DVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVIIYCTRE 717
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
R + L + D R C ++YH+G+ +++R R+Q+ F +R+VV
Sbjct: 718 RIQNGWLALLRTCLSMVGDSRPRG-CGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVV 776
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
ATVAFGMGLD+ DV AV+H LP S E YVQ IGRAGRDG+ ++CHLF+
Sbjct: 777 ATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLFM 825
>gi|336311321|ref|ZP_08566285.1| ATP-dependent DNA helicase, RecQ family [Shewanella sp. HN-41]
gi|335865124|gb|EGM70174.1| ATP-dependent DNA helicase, RecQ family [Shewanella sp. HN-41]
Length = 660
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 150/404 (37%), Positives = 222/404 (54%), Gaps = 14/404 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+ +FR GQLE I +L S++ + PTG+GKSLCYQ A+ LP LTLV+ PL+
Sbjct: 21 LLQRQFGFTAFRGGQLETISQLLAGHSSLAIFPTGSGKSLCYQFTALQLPQLTLVISPLL 80
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I + S+ E+ + + + G +K+L VS ERF N F F
Sbjct: 81 ALMKDQLEFLRSKGIAAASIDSTLNAEQSKQVMMDARAGRLKILMVSVERFKNERFRQ-F 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ IS++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT D+
Sbjct: 140 IQSVAISMLVVDEAHCISEWGHNFRPDYLKLPD--YRRELNIPLVLLLTATATRKVKLDM 197
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+I +++Q R NL L+V Q++ + EV F + Y LQ +
Sbjct: 198 AMRFDIAPEHIVQTGFYRANLDLNVL--PVTSQDKVTRLHQEVSRFSGAGIVYVTLQSTA 255
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ +++ LC + +YH+G R +IQ F ++I+VVVAT+AFGMG+DK +
Sbjct: 256 EE-----VAKALCSKGVVASAYHAGFEDIKRQQIQNDFMQDRIQVVVATIAFGMGIDKSN 310
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIHY LP+S+E Y QEIGRAGRDG S+C + + + +Y D + +I
Sbjct: 311 IRFVIHYDLPKSIENYSQEIGRAGRDGLPSHCVTLANLDGMNTVENFVYGDTPERESIEY 370
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
+ + H L + S +I++ + TLL LE+
Sbjct: 371 LIENI---KQEQHDARWELQLNALSNASNIRQLPLKTLLVQLEI 411
>gi|410641241|ref|ZP_11351762.1| ATP-dependent DNA helicase RecQ [Glaciecola chathamensis S18K6]
gi|410139160|dbj|GAC09949.1| ATP-dependent DNA helicase RecQ [Glaciecola chathamensis S18K6]
Length = 673
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 179/564 (31%), Positives = 279/564 (49%), Gaps = 54/564 (9%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMI 255
++G++ FR GQ + + +L S++ + PTG+GKSLCYQ A+ LP LTLVV PL+ALM
Sbjct: 22 IFGFNQFRTGQQQVVSQLLSGHSSLAIFPTGSGKSLCYQFCAVHLPHLTLVVSPLLALMK 81
Query: 256 DQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS 314
DQL L I G + S+ P+E T+ ++ G IK+L VS ERF N F + S
Sbjct: 82 DQLAFLQTKGIPAGSIDSTLSPDEQRNTMERVKSGEIKILMVSVERFKNERFRQFIDSVS 141
Query: 315 LISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374
+S++V+DEAHC+SEW HNFRP Y++L +A+LN+ +L +TATAT D+
Sbjct: 142 -VSMLVIDEAHCISEWGHNFRPDYLKLPD--YKAQLNIPLVLLLTATATKKVKLDMAKRF 198
Query: 375 EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
I +++Q R+NL L+V + Q + S + + Y LQ + +
Sbjct: 199 AIAPEHIVQTGFYRENLDLNVIPT--QEQQKASTLLQLIEQQQGCGIVYVTLQHTAEQ-- 254
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
++ L + +S K+YH+G+ + R ++Q+ F + +VVVAT+AFGMG+DK D+ V
Sbjct: 255 ---VAVGLAASGVSAKAYHAGLGDEVRQQVQQDFMLGRTQVVVATIAFGMGIDKSDIRFV 311
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVDEYAINKFL 552
+HY LP+S+E Y QEIGRAGRDG+ S C LD + + + +Y D + I L
Sbjct: 312 VHYDLPKSIENYSQEIGRAGRDGQPSRCITLGNLDGLN--TVENFVYGDTPELQGIQIVL 369
Query: 553 CQVFTNGMNSHGKLCSLVKESASRKFDIKEEVML---------------TLLTCLELGEI 597
+ G+ S L K +A FD + EV + TLL LEL I
Sbjct: 370 DDI-RQGIQSRNTQ-PLSKTAADISFDGQWEVQIHGLSTQSNIRQLPLKTLLVQLELMGI 427
Query: 598 QYLQLLPELKVTCTLNFHKTTPTLLADKDKMVA-----------TILKKSETKQGQYVFD 646
+ P+ + F L DK ++ ++ + ++ K+ +
Sbjct: 428 ----VRPQYTYFADVRF-----KFLQDKADVLGRFDEKRQAFLNSVFEHTDFKKVWGSLN 478
Query: 647 IPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLS 706
T+ GA V L L+ I + K Y + D L+ L + S
Sbjct: 479 FDTLFEQTGAERSRVVAALEYLEQHQLIELQTKQMTEVYQVNSTAIDQSDLAETLHGYFS 538
Query: 707 EVENCKVRKLDRMFHAAVFAVDVC 730
E E +++++ + F +D C
Sbjct: 539 EKEQKELQRIAMLVR--FFQLDKC 560
>gi|146305409|ref|YP_001185874.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina ymp]
gi|145573610|gb|ABP83142.1| ATP-dependent DNA helicase, RecQ-like protein [Pseudomonas
mendocina ymp]
Length = 642
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 182/584 (31%), Positives = 277/584 (47%), Gaps = 42/584 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+D R GQ I VL +S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 4 LKRVFGFDQLRPGQEAVISAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVISPLLA 63
Query: 253 LMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q E+ AE + + G +K+L +S ER N F + F
Sbjct: 64 LMQDQLAFLHAHGIAAASIDSAQTREQAAEVMNRARSGELKILMISVERLKNERFRN-FI 122
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + + ++ +L +TATAT + D+
Sbjct: 123 AQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFGIKQVLLLTATATPRVIADMR 180
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH-YYILQISG 430
I ++++ R NL L V + +R + + + R Y+ Q
Sbjct: 181 EKFAIAEADVVTTGFYRPNLNLLVEPVPGGAKTQR---LQQWLAPRRGQASIVYVTQ--- 234
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ L + ++V +YH+G+ + R IQ F + ++ +VAT+AFGMG+DKRD
Sbjct: 235 -QKTAEQVAERLARDGLAVSAYHAGMAHEVRESIQRRFMAGELECIVATIAFGMGIDKRD 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + L + +Y D + I
Sbjct: 294 IRNVVHFDLPKSVENYSQEIGRAGRDGQASDCLVLASRDGLSVLENFVYGDTPELAGIRA 353
Query: 551 FLCQVFTNGMNSHGKLC--SLVKESASRKFDIKEEVMLTLLTCLELGEI---QYLQLLPE 605
L + G +L L + S R +K TLL LEL I +Y E
Sbjct: 354 VLDDLRAVGTGGQWELMLGQLSEHSNIRALPLK-----TLLVQLELRGIIAPRY-AYFAE 407
Query: 606 LKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQL 665
+ L ++ + V IL S+ + D + GA V L
Sbjct: 408 YRFKLLLEDEALLAQFEGERRQFVEAILACSKRARTWSTLDFDALYRQHGAERARVVKAL 467
Query: 666 LNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVF 725
+ RG + E K Y +++ + AL+ L E ++ ++ M A+F
Sbjct: 468 DYFQERGWLELESKQMTEVYAVLDGGFEVEALADDLHAHFRAHEASEIARIQAML--ALF 525
Query: 726 AVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + + YF GD+ P + G S
Sbjct: 526 E--------------SRECLSRRLALYF-GDEQ--APERCGHCS 552
>gi|421505507|ref|ZP_15952445.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina DLHK]
gi|400343916|gb|EJO92288.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina DLHK]
Length = 642
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 182/584 (31%), Positives = 277/584 (47%), Gaps = 42/584 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+D R GQ I VL +S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 4 LKRVFGFDQLRPGQEAVISAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVISPLLA 63
Query: 253 LMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q E+ AE + + G +K+L +S ER N F + F
Sbjct: 64 LMQDQLAFLHAHGIAAASIDSAQSREQAAEVMNRARSGELKILMISVERLKNERFRN-FI 122
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + + ++ +L +TATAT + D+
Sbjct: 123 AQVPISLLVVDEAHCISEWGHNFRPDYLKL--PDYQRQFGIKQVLLLTATATPRVIADMR 180
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH-YYILQISG 430
I ++++ R NL L V + +R + + + R Y+ Q
Sbjct: 181 EKFAILDADVVTTGFYRPNLNLLVEPVPGGAKAQR---LQQWLAPRRGQASIVYVTQ--- 234
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ L + ++V +YH+G+ + R IQ F + +++ +VAT+AFGMG+DKRD
Sbjct: 235 -QKTAEQVAERLARDGLAVSAYHAGMAHEVRESIQRRFMAGELQCIVATIAFGMGIDKRD 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + L + +Y D + I
Sbjct: 294 IRNVVHFDLPKSVENYSQEIGRAGRDGQASDCLVLASRAGLSVLENFVYGDTPELAGIRA 353
Query: 551 FLCQVFTNGMNSHGKLC--SLVKESASRKFDIKEEVMLTLLTCLELGEI---QYLQLLPE 605
L + G +L L + S R +K TLL LEL I +Y E
Sbjct: 354 VLDDLRAVGTGGQWELMLGQLSEHSNIRALPLK-----TLLVQLELRGIIAPRY-AYFAE 407
Query: 606 LKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQL 665
+ L ++ + V IL S + D + GA V L
Sbjct: 408 YRFKLLLEDEALLAQFEGERRQFVEAILACSTRARTWSTLDFDALYQQYGAERARVVKAL 467
Query: 666 LNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVF 725
+ RG + E K Y +++ + AL+ L E ++ ++ M A+F
Sbjct: 468 DYFQERGWLELESKQMTEVYAVLDGGFEVEALADDLHAHFRAHEASEIARIQAML--ALF 525
Query: 726 AVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
CL + + YF GD+ P + G S
Sbjct: 526 E--------------SRECLSRRLALYF-GDEQ--APERCGHCS 552
>gi|152995484|ref|YP_001340319.1| ATP-dependent DNA helicase RecQ [Marinomonas sp. MWYL1]
gi|150836408|gb|ABR70384.1| ATP-dependent DNA helicase, RecQ family [Marinomonas sp. MWYL1]
Length = 651
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 194/602 (32%), Positives = 290/602 (48%), Gaps = 46/602 (7%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L L ++G+D FR+GQ + I+ +L S++ V PTG+GKSLCYQ A LP LTLV+
Sbjct: 8 HLEHSLHSLFGFDQFREGQQQTIEQLLTGHSSLAVFPTGSGKSLCYQFTATQLPNLTLVI 67
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQL L I L SSQ +E + +Q GAIK+L +S ERF N F
Sbjct: 68 SPLIALMHDQLAFLTAKGIPAACLDSSQSKDESQAVMSGVQSGAIKILMISVERFKNERF 127
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
F IS++VVDEAHC+SEW HNFRP Y++L + + L + +L +TATAT
Sbjct: 128 RR-FIKRVPISMLVVDEAHCISEWGHNFRPDYLKLPS--YQQELAIPLVLLLTATATRRV 184
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
RD+ I +++Q R NL + + +++E+ + + V + + + Y+
Sbjct: 185 QRDMAQKFAIYPEHIVQTGFYRHNLDIDLI---PIQRHEKLSTLKNVLNDTQGASIVYVT 241
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
Q + ++R L + S +YH+G+ + RS IQ F ++K R++VAT+AFGMG+
Sbjct: 242 QQK----TAEDVARALQADGYSAVAYHAGLNSDIRSAIQADFMNSKTRIIVATIAFGMGI 297
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK D+ V+H+ LP+S+E Y QEIGRAGRD + S C + L + +Y D +
Sbjct: 298 DKSDIRLVVHFDLPKSIENYSQEIGRAGRDNQPSRCVMLASLEGLSTLENFVYGDTPEPQ 357
Query: 547 AINKFLCQVF--TNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL-GEIQ-YLQL 602
I+ L + T +L L + R +K TLL LEL G +
Sbjct: 358 DIDTLLRCITEQTVEYEWETQLYGLSNLTNIRSLPLK-----TLLVQLELFGALTPKYSF 412
Query: 603 LPELKVTCT---LNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTI 659
++K+ + F PT + ILK + K+ D + N G +
Sbjct: 413 YADIKIKWEGDRIAFANQIPT---EWQAAYQAILKGIQYKKIWGTPDFDKLFNEAGLSRG 469
Query: 660 DVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRM 719
DV L +T E K Y + L+ L +++ E ++ +V ++ M
Sbjct: 470 DVLQVLEFAADHNVLTLESKGLTEVYQVHSEHFHHQTLANQLHQYVEEKQSAEVARIATM 529
Query: 720 FHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRADIKVF 779
F +D CL N+ YF GD N P G S R I VF
Sbjct: 530 IR--FFQLD--------------RCLNNNLARYF-GDQNS--PEHCGHCS-VCRGKILVF 569
Query: 780 LQ 781
Q
Sbjct: 570 SQ 571
>gi|160875489|ref|YP_001554805.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS195]
gi|418025284|ref|ZP_12664263.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica OS625]
gi|160861011|gb|ABX49545.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica OS195]
gi|353535268|gb|EHC04831.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica OS625]
Length = 662
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 196/332 (59%), Gaps = 11/332 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+ FR GQ + I +L KS++ + PTG+GKSLCYQ A+ LP L+LV+ PL+
Sbjct: 14 LLQQDFGFSEFRPGQAQTITQLLAGKSSLAIFPTGSGKSLCYQFTALQLPHLSLVISPLL 73
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I+ + S+ E+ + + + G +K+L VS ERF N F
Sbjct: 74 ALMKDQLEFLQSKGIYAASIDSTLSAEQSQQVMADARSGKLKILMVSVERFKNERFRQFI 133
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L S++VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT D+
Sbjct: 134 QSVPL-SMLVVDEAHCISEWGHNFRPDYLKLPD--YRRELEIPLVLLLTATATRKVKLDM 190
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+I +++Q R NL L+V +N + V ++ SF + Y LQ +
Sbjct: 191 AKRFDIAPEHIVQTGFYRPNLDLTVLPLSTQEKN--TLLVQQIASFSGAGIVYVTLQQTA 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++R L I +YH+G + R +IQ F +K++VVVAT+AFGMG+DK +
Sbjct: 249 -----ETVARLLSQQGIVASAYHAGFEDEKRQQIQNDFMQDKLQVVVATIAFGMGIDKSN 303
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+ VIHY LP+S+E Y QEIGRAGRDG LS+C
Sbjct: 304 IRFVIHYDLPKSIENYSQEIGRAGRDGALSHC 335
>gi|399519045|ref|ZP_10759853.1| DNA helicase [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399112869|emb|CCH36411.1| DNA helicase [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 640
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 170/533 (31%), Positives = 260/533 (48%), Gaps = 19/533 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+D R GQ I VL +S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+A
Sbjct: 4 LKRVFGFDQLRPGQETVISAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVISPLLA 63
Query: 253 LMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + S+Q E+ AE + + G +K+L +S ER N F + F
Sbjct: 64 LMQDQLAFLHAHGIAAASIDSAQSREQAAEVMNRARSGELKILMISVERLKNERFRN-FI 122
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A ISL+VVDEAHC+SEW HNFRP Y++L + + ++ +L +TATAT + D+
Sbjct: 123 AQVPISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFGIKQVLLLTATATPKVIADMR 180
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
I ++++ R NL L V + G +Q ++ R + +
Sbjct: 181 EKFAIAEADVVTTGFYRPNLNLLVEPVPGGAKQQRLQQWLAP-----RRGQASIVYVTQQ 235
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K E ++ +L + ++V +YH+G+ R IQ F + ++ +VAT+AFGMG+DKRD
Sbjct: 236 KTSEQ--VAEHLAGDGLAVSAYHAGMAHDVRESIQRRFMAGELECIVATIAFGMGIDKRD 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C + L + ++ D + I
Sbjct: 294 IRNVVHFDLPKSVENYSQEIGRAGRDGQASDCLVLASRDGLSVLENFVFGDTPELSGIRA 353
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI---QYLQLLPELK 607
L + G G L+ S +I+ + TLL LEL I +Y E +
Sbjct: 354 VLDDLRAVGT---GGQWELMLGQLSELSNIRALPLKTLLVQLELRGIIAPRY-AYFAEYR 409
Query: 608 VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN 667
L ++ + V IL S + D + GA V L
Sbjct: 410 FKLLLEDDVLLAKFEGERRQFVEAILASSRRARTWSTLDFDLLYRDHGAERARVVKALDY 469
Query: 668 LKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMF 720
+ +G + E K Y +++ D AL+ L E ++ ++ M
Sbjct: 470 FQEKGWLELESKQMTEVYAVLDGGFDVEALADDLYAHFRAHEASEIARIQAML 522
>gi|405968111|gb|EKC33211.1| ATP-dependent DNA helicase Q4 [Crassostrea gigas]
Length = 883
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 202/361 (55%), Gaps = 43/361 (11%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP----GLTLVVCPLVA 252
+G+++FR GQ A+K +L ST++VL TG GKSLCYQ+PA + +TLV+ PLV
Sbjct: 525 FGFEAFRAGQEHAVKRILAGLSTLVVLSTGGGKSLCYQLPAYLYAQRSKAITLVISPLVT 584
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312
LPP + G L ++ + ++ ++ G + L VSPE +
Sbjct: 585 -------GLPPGVKGACLHTNMTTAQRESVLQNVKEGRVHFLLVSPEAVAGGGMALLNNR 637
Query: 313 TSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+SL I+ V +DEAHC+SEWSHNFRPSY+RL +LR + V+C L +TAT+T +T +DV
Sbjct: 638 SSLPPIAFVCIDEAHCLSEWSHNFRPSYLRL-TKVLREKFGVQCFLGLTATSTLSTSQDV 696
Query: 371 MSALEIPLSN--LIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
L I ++ +I+ + + NL LSVS R R + + R S I+
Sbjct: 697 AKHLGISDTDNAIIRGSPVPKNLLLSVS-----RDENRDEALIGLLQGDRFSSCESIIVY 751
Query: 429 SGKHFETD----LISRYLCDNSIS------------------VKSYHSGIPAKDRSRIQE 466
+ ETD LI L D +SYH+G+ R R+Q
Sbjct: 752 CTRRQETDRLATLIRTCLKDYKAEDWDQKPKKGKAKTYAYWDAESYHAGLTPAQRKRVQN 811
Query: 467 LFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
F S ++RVVVATVAFGMGLDK DV VIHY++P+S+E YVQEIGRAGRD + S+CHLFL
Sbjct: 812 AFMSGRLRVVVATVAFGMGLDKPDVRGVIHYNMPKSMESYVQEIGRAGRDRKTSHCHLFL 871
Query: 527 D 527
D
Sbjct: 872 D 872
>gi|359435260|ref|ZP_09225480.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20652]
gi|357918084|dbj|GAA61729.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20652]
Length = 642
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 156/405 (38%), Positives = 224/405 (55%), Gaps = 28/405 (6%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ FR GQ + I+ +L+ +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+ALM D
Sbjct: 13 FGFSQFRTGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPNLTLVVSPLLALMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ L SSQ + + + ++ IKVL VS ERF N F + L
Sbjct: 73 QISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNDKIKVLMVSVERFKNERFREFISQVKL 132
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
S++VVDEAHC+SEW HNFRP Y++L R LN+ +L +TATAT RD+
Sbjct: 133 -SMLVVDEAHCISEWGHNFRPDYLKL--PRYREELNIPLVLLLTATATKKVKRDMAERFA 189
Query: 376 IPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
I ++Q R NL LSV S+ ++ E + V + + Y LQ S +
Sbjct: 190 IAPECIVQTGFYRANLDLSVLSVKTADKNTELTNIVR---AQNGPGIVYVTLQQSAEQ-- 244
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
++ L + +YH+G+ R +IQ+ F KI VVVAT+AFGMG+DK D+ V
Sbjct: 245 ---VANVLSAQGVHAVAYHAGLEDTLRWQIQDDFMGGKINVVVATIAFGMGVDKSDIRFV 301
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD-----GVDEYAIN 549
IHY LP+S+E Y QEIGRAGRDG S C+ + + + +Y D G+ EY IN
Sbjct: 302 IHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGI-EYVIN 360
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
SH + + + S S + +I++ + TLL LE+
Sbjct: 361 DI--------RQSHQQW-EMQEYSLSSESNIRQLALKTLLVQLEM 396
>gi|120598802|ref|YP_963376.1| ATP-dependent DNA helicase RecQ [Shewanella sp. W3-18-1]
gi|120558895|gb|ABM24822.1| ATP-dependent DNA helicase, RecQ family [Shewanella sp. W3-18-1]
Length = 659
Score = 245 bits (625), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 175/549 (31%), Positives = 279/549 (50%), Gaps = 32/549 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+ +FR+GQ + I +L +S++ + PTG+GKSLCYQ A+ LP LTLVV PL+
Sbjct: 20 LLQQQFGFSAFRNGQYQTISQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPLL 79
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I + S+ E+ + + + G +K+L VS ERF N F F
Sbjct: 80 ALMKDQLEFLQAKGIAAASIDSTLNAEQTKQVMMDARSGKLKILMVSVERFKNERFRQ-F 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ IS++V+DEAHC+SEW HNFRP Y++L R L + +L +TATAT D+
Sbjct: 139 IQSVAISMLVIDEAHCISEWGHNFRPDYLKLPD--YRRELGIPLVLLLTATATRKVKLDM 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSV--SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+ +I +++Q R NL L V LS Q + + +V + + Y LQ
Sbjct: 197 AARFDIAPKHIVQTGFYRPNLDLCVIPVLS----QEKNALLYRQVRQYAGAGIVYVTLQH 252
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + ++ L I ++YH+G R ++Q F +K++VVVAT+AFGMG+DK
Sbjct: 253 TAEQ-----VADLLIQEGILARAYHAGFDDVKRQQVQHDFMQDKVQVVVATIAFGMGIDK 307
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
++ VIHY LP+S+E Y QEIGRAGRDG+ S+C + + + +Y D + I
Sbjct: 308 SNIRFVIHYDLPKSIENYSQEIGRAGRDGQHSHCVTLANLDGMNTVENFVYGDTPERSGI 367
Query: 549 N---KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPE 605
+ + Q G H +L +L S R+ +K TLL LE+ + ++ L
Sbjct: 368 ELIIENIKQEQHQGRWEH-QLNTLSSISNIRQLPLK-----TLLVQLEIQGV--IKPLYA 419
Query: 606 LKVTCTLNFHKTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDV 661
T F K +L+ ++ ++ I + K+ V D+ + ++ GA V
Sbjct: 420 YYADVTYRFIKDKSEILSAFNPERQAFLSQIFTHTHMKRVWGVLDVDALYSATGAERSKV 479
Query: 662 SNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFH 721
L L + I E K Y + +L +L ++ E E+ ++ ++ ++
Sbjct: 480 LTALEYLADKQWIELETKKITDVYQVNNTILAQISLVDNLHQYFVEKEHKEILRIGQLVR 539
Query: 722 AAVFAVDVC 730
F +D C
Sbjct: 540 --FFELDTC 546
>gi|116629645|ref|YP_814817.1| superfamily II DNA helicase [Lactobacillus gasseri ATCC 33323]
gi|238854270|ref|ZP_04644614.1| ATP-dependent DNA helicase RecQ [Lactobacillus gasseri 202-4]
gi|282851150|ref|ZP_06260517.1| ATP-dependent DNA helicase RecQ [Lactobacillus gasseri 224-1]
gi|311110712|ref|ZP_07712109.1| ATP-dependent DNA helicase RecQ [Lactobacillus gasseri MV-22]
gi|420147210|ref|ZP_14654486.1| ATP-dependent helicase RecQ [Lactobacillus gasseri CECT 5714]
gi|116095227|gb|ABJ60379.1| ATP-dependent DNA helicase, RecQ-like protein [Lactobacillus
gasseri ATCC 33323]
gi|238833081|gb|EEQ25374.1| ATP-dependent DNA helicase RecQ [Lactobacillus gasseri 202-4]
gi|282557682|gb|EFB63277.1| ATP-dependent DNA helicase RecQ [Lactobacillus gasseri 224-1]
gi|311065866|gb|EFQ46206.1| ATP-dependent DNA helicase RecQ [Lactobacillus gasseri MV-22]
gi|398401211|gb|EJN54713.1| ATP-dependent helicase RecQ [Lactobacillus gasseri CECT 5714]
Length = 597
Score = 245 bits (625), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 214/361 (59%), Gaps = 17/361 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ V+GY +FR GQ + I +VL ++ + V+PTGAGKSLCYQIPA+I PGLTLVV PL
Sbjct: 5 QVLKDVFGYTTFRAGQEKVINLVLKGENVLAVMPTGAGKSLCYQIPALINPGLTLVVSPL 64
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ L+S+ EEV +R G IK+L+V+PER L ++
Sbjct: 65 ISLMKDQIDSLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLLYVTPER-LAMNYFRY 123
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+SLV VDEAHC+S+W H+FRP+Y ++ + + N ILA+TATAT + +D
Sbjct: 124 QLNFLNVSLVAVDEAHCISQWGHDFRPAYRQIMDGVKSIKSNPN-ILALTATATPSVQKD 182
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L+IP +N + + R NL V +N +N +D + S Y +
Sbjct: 183 IADQLQIPSANYVITSFARPNLSFKVV---DNPKNTNLYLLDYIKQHPHESGIIY--AST 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
KH E ++ YL N I SYH+G+ K+R+ +Q+ F +K++V+VAT AFGMG+DKR
Sbjct: 238 RKHVEE--LTDYLAQNGILTASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDKR 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFRLRSLMYSDGVDE 545
+V VIH + +LE Y QE GRAGRDG C L DI +R + SD DE
Sbjct: 296 NVRFVIHANSTPNLESYYQEAGRAGRDGEA--CEGILIYHPKDIRLYRW-FIEQSDLDDE 352
Query: 546 Y 546
Y
Sbjct: 353 Y 353
>gi|366163905|ref|ZP_09463660.1| ATP-dependent DNA helicase RecQ [Acetivibrio cellulolyticus CD2]
Length = 701
Score = 245 bits (625), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 201/334 (60%), Gaps = 11/334 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
LR +GY SFR GQ + I+ +++ ++ ++PTG GKSLCYQIPA+++ G T+V+ PL++
Sbjct: 8 LRRYFGYSSFRQGQEKIIESIMNGFDSLGIMPTGGGKSLCYQIPALLMDGTTIVISPLIS 67
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + I F++SS E+ +RL + G K+L+V+PER + F+++
Sbjct: 68 LMKDQVEALNNLGISSAFINSSLEWRELEHQLRLARKGEFKLLYVAPERLESERFINMLE 127
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ + +S+V +DEAHCVS+W H+FRPSY++L A L+ N + A TATAT +D++
Sbjct: 128 SIT-VSMVAIDEAHCVSQWGHDFRPSYLKL-AQFLKQLPNRPVVTAFTATATERVKQDII 185
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
LE+ + R NL SV N +D V + S + + +
Sbjct: 186 KLLELKTPKVFVTGFDRSNLFFSVRKGANK--------LDYVVKYLESHNNEAGIIYAAT 237
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E D + L I V YH+G+ ++R+R Q+ F ++IRV+VAT AFGMG+DK +V
Sbjct: 238 RKEVDRLYEVLHRRGIPVGKYHAGMTDEERNRNQDDFTYDRIRVIVATNAFGMGIDKSNV 297
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
VIH+++P+++E Y QE+GRAGRDG + C L
Sbjct: 298 RFVIHFNMPKNMESYYQEVGRAGRDGDEAECVLL 331
>gi|117620919|ref|YP_856954.1| DNA helicase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117562326|gb|ABK39274.1| DNA helicase [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 642
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 171/532 (32%), Positives = 251/532 (47%), Gaps = 17/532 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +G+D R GQ I +L +S + PTG+GKSLCYQ+PA+ LP LTLV+ PL+
Sbjct: 5 LLTRHFGFDRLRPGQEAVISRLLAGQSAAAIFPTGSGKSLCYQLPALALPHLTLVISPLI 64
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I L SS PEE ++ G +K+L +S ER N F
Sbjct: 65 ALMHDQLAFLRSKGIAAATLDSSLTPEESRRVMQQASDGQLKILMISVERLKNERFRRFI 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT + D+
Sbjct: 125 QQVPL-SMLVVDEAHCISEWGHNFRPDYLKLPD--YRRELQIPQVLLLTATATPAVMADM 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ EI LI R NL L+V + R ++ R I+ ++
Sbjct: 182 QAKFEIEDEGLIVTGFYRANLDLAVVPLPDE---ARDGWLH--VELARDPAAPTIIYVTL 236
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+H +R L I ++YH+G+ A RS+IQ F + K+ +VAT+AFGMG+DK D
Sbjct: 237 QHTAEQCAAR-LQQAGIKARAYHAGLDATLRSQIQHDFMAGKLDCIVATIAFGMGIDKAD 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINK 550
+ VIHY LP+S+E Y QEIGRAGRDG S C + + L + +Y D D AI
Sbjct: 296 IRRVIHYDLPKSIENYSQEIGRAGRDGLPSRCMVLANHSQLPVLENFVYGDTPDRAAIVT 355
Query: 551 FLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPELKV 608
L + +G L L ++ R+ +K TLL LE+ I E +
Sbjct: 356 LLEILQQSGSEWEFGLLRLSNDTNIRQLPLK-----TLLVYLEMAGIIAPAYSYFAEYRF 410
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
L+ + + + + + + D + + L L
Sbjct: 411 KFVLDKADILARFNPARRQFLEQVFASAPLARSWCTMDFEALWQGYQGERSRAAAALDYL 470
Query: 669 KMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMF 720
+ +G I E K Y +++ D L+ L + E ++ +L +
Sbjct: 471 QQQGWIELESKQMTEVYRVLQQDLDIATLADQLHGLFEKKEQSELARLQALL 522
>gi|423419182|ref|ZP_17396271.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3X2-1]
gi|401105788|gb|EJQ13755.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3X2-1]
Length = 705
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
S LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CSTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|423662335|ref|ZP_17637504.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM022]
gi|401297954|gb|EJS03559.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM022]
Length = 705
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 197/336 (58%), Gaps = 11/336 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL
Sbjct: 7 ELLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPL 66
Query: 251 VALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 67 ISLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQ 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D
Sbjct: 127 LIDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRED 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ + L I N I R+NL SV + G +R + Y+ H++ K I+ +
Sbjct: 185 ICNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------HQNQKESGIIYAA 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK
Sbjct: 238 TRKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKS 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
++ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 297 NIRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|359394015|ref|ZP_09187068.1| ATP-dependent DNA helicase recQ [Halomonas boliviensis LC1]
gi|357971262|gb|EHJ93707.1| ATP-dependent DNA helicase recQ [Halomonas boliviensis LC1]
Length = 671
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 151/408 (37%), Positives = 224/408 (54%), Gaps = 12/408 (2%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+D FR GQ ++ VLD ST + TGAGKSLCYQ+PA+ LP LTLVV PL+A
Sbjct: 10 LKDVFGFDDFRGGQQAVVERVLDGHSTAAIFATGAGKSLCYQLPALHLPHLTLVVSPLLA 69
Query: 253 LMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
LM DQL L HG + S+Q + E + + G +K+L VS ER N F
Sbjct: 70 LMQDQLAFL--ARHGVAAASIDSTQDRDTTREVMERAKSGELKILMVSVERLKNERFRH- 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F ISL+VVDEAHC+SEW HNFRP Y++L + + +L +TATAT T + D
Sbjct: 127 FLRQVQISLLVVDEAHCLSEWGHNFRPDYLKLPD--YQRDFAIPQVLLLTATATPTVIAD 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ I N+I R NL+L V+ + +RQ + ++ S+ I+ ++
Sbjct: 185 MGEKFAIAADNVITTGFYRSNLELLVAPAMEDRQQQLINWLKP--QMQPGSEAPTIIYVT 242
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ + +++ L I+ ++YH+G+ ++ R IQ F + +VAT+AFGMG+DK
Sbjct: 243 LQQ-TAERVAKALAVQGIAAQAYHAGLDSQQRDEIQRQFMGGESPCIVATIAFGMGIDKG 301
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
D+ V+HY LP+S+E Y QEIGRAGRDG S C L + +Y D + I
Sbjct: 302 DIRNVVHYDLPKSIENYSQEIGRAGRDGLPSTCLTMAGRDGLRVLENFVYGDTPEYAGIY 361
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
+ L ++ G + + ++ + SR +I+ + TLL LE+ I
Sbjct: 362 RLLEEIAAAG-QAPDRQWEVLLNTLSRDTNIRPLPLKTLLVRLEMHGI 408
>gi|125624769|ref|YP_001033252.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. cremoris
MG1363]
gi|389855147|ref|YP_006357391.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124493577|emb|CAL98562.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071569|gb|ADJ60969.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 592
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 216/356 (60%), Gaps = 11/356 (3%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ ++GYD FR+GQ + I+ VL ++T+ +LPTGAGKS+CYQ+PA+I GLTLV+
Sbjct: 2 NLEIKLKEIFGYDYFRNGQKQIIEQVLAGQATLGILPTGAGKSICYQLPAVIQSGLTLVI 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I F++S+ E + +R ++ G IK+LFV+PERF + D+
Sbjct: 62 SPLISLMKDQVDQLNIAGIPATFINSTLEEGESYQRMRQVENGEIKLLFVAPERF-SLDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ F I LV +DEAHC+S+W H+FRPSY+ A+ L+ +LA+TATAT
Sbjct: 121 FNNFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDF-AAHLKDLPTRPTVLALTATATPKV 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D+ S L I S+ I+ LR+NL+ V + G +++ Y+ ++ S+ I+
Sbjct: 180 ADDIQSLLSISPSHTIKTGFLRENLRFEV-VKGMDKRTFLKNYLK-----NQESESAGII 233
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
S + E + I +L N YH+G+ ++R QELF +++ ++VAT AFGMG+
Sbjct: 234 YASTRK-EVEEICEWLNHNHFKAVRYHAGLSERERQMNQELFLFDEVPIMVATNAFGMGI 292
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
+K +V VIHY++P ++E Y QE GRAGRDG L + L R+R+ + G
Sbjct: 293 NKPNVRFVIHYAIPATIESYYQEAGRAGRDG-LESDAILLFSPNDLRIRNFLIEQG 347
>gi|229018126|ref|ZP_04175001.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1273]
gi|229024308|ref|ZP_04180766.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1272]
gi|228737002|gb|EEL87539.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1272]
gi|228743217|gb|EEL93342.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1273]
Length = 705
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
S LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CSTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|423390942|ref|ZP_17368168.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1X1-3]
gi|401636775|gb|EJS54528.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1X1-3]
Length = 705
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
S LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CSTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|116512679|ref|YP_811586.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. cremoris
SK11]
gi|116108333|gb|ABJ73473.1| ATP-dependent DNA helicase, RecQ-like protein [Lactococcus lactis
subsp. cremoris SK11]
Length = 593
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 216/358 (60%), Gaps = 15/358 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ ++GYD FR+GQ + I+ VL ++T+ +LPTGAGKS+CYQ+PA+I GLTLV+
Sbjct: 2 NLEIKLKEIFGYDYFRNGQKQIIEQVLAGQATLGILPTGAGKSICYQLPAVIQSGLTLVI 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I F++S+ E + +R ++ G IK+LFV+PERF + D+
Sbjct: 62 SPLISLMKDQVDQLNIAGIPATFINSTLEEGESYQRMRQVENGEIKLLFVAPERF-SLDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
+ F I LV +DEAHC+S+W H+FRPSY+ A L L R V LA+TATAT
Sbjct: 121 FNNFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFAAHLKDLPTRPTV---LALTATATP 177
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ S L I S+ I+ LR+NL+ V + G +++ Y+ ++ S+
Sbjct: 178 KVADDIQSLLSISPSHTIKTGFLRENLRFEV-VKGMDKRTFLKNYLK-----NQESESAG 231
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ S + E + I +L N YH+G+ ++R QELF +++ ++VAT AFGM
Sbjct: 232 IIYASTRK-EVEEICEWLNHNHFKAVRYHAGLSERERQMNQELFLFDEVPIMVATNAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
G++K +V VIHY++P ++E Y QE GRAGRDG L + L R+R+ + G
Sbjct: 291 GINKPNVRFVIHYAIPATIESYYQEAGRAGRDG-LESDAILLFSPNDLRIRNFLIEQG 347
>gi|410632491|ref|ZP_11343149.1| ATP-dependent DNA helicase RecQ [Glaciecola arctica BSs20135]
gi|410147917|dbj|GAC20016.1| ATP-dependent DNA helicase RecQ [Glaciecola arctica BSs20135]
Length = 594
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/350 (37%), Positives = 206/350 (58%), Gaps = 17/350 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FRDGQ + I VL +K ++++PTG GKSLCYQIPAM+LPGLT+VV PL+
Sbjct: 7 ILKQTFGYDHFRDGQAQVISQVLQQKDVLVLMPTGGGKSLCYQIPAMLLPGLTIVVSPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L ++ +++S+ P+E+ + +Q G K+++V+PER + +F+
Sbjct: 67 SLMKDQVDALLTYGVNAAYINSNLSPQEMFNVYKSMQDGKYKLIYVAPERLMQLEFIHRL 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ +SL+ VDEAHCVS W H+FR Y RL L N+ I+ +TATA T D+
Sbjct: 127 QGLT-VSLIAVDEAHCVSHWGHDFRKDY-RLLGQLKATFPNIP-IMGLTATADLATRADI 183
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY--VDEVFSFHRSSKHYYILQI 428
L + + + + R N+ R N+ + Y D+ +F + + I+
Sbjct: 184 TQQLNLQQPFIFKGSFDRPNI----------RYNQVTKYKATDQAIAFVKQQEGSGIIYC 233
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + + D +S L + ++ YH+G+ + R +IQ F +KI ++VATVAFGMG+DK
Sbjct: 234 NSRR-KVDDLSIALAKHGVNCAGYHAGLEGEIRDKIQRDFIQDKIDIIVATVAFGMGIDK 292
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
+V V+H+ LP S+E Y QEIGRAGRDG + L D+ R+R +
Sbjct: 293 SNVRFVVHFDLPRSIESYYQEIGRAGRDGMPAEALLLFDEKDAARIRQWI 342
>gi|441506545|ref|ZP_20988513.1| ATP-dependent DNA helicase RecQ [Photobacterium sp. AK15]
gi|441425751|gb|ELR63245.1| ATP-dependent DNA helicase RecQ [Photobacterium sp. AK15]
Length = 613
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/346 (38%), Positives = 208/346 (60%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ V+GY +FR GQ E I+ V + + ++++PTG GKSLCYQIPA++ GLTLVV PL
Sbjct: 19 QILQDVFGYQTFRTGQQEVIEAVAEGRDCLVIMPTGGGKSLCYQIPALMCDGLTLVVSPL 78
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + L+S+Q E + ET R +Q G +K+ +VSPER + +F+
Sbjct: 79 ISLMKDQVDQLKANGVAAACLNSTQSREAMQETYRAMQDGEVKLAYVSPERVMTREFMER 138
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L SLV VDEAHC+S+W H+FRP Y L L+ + I+A+TATA TT +D
Sbjct: 139 LRDMPL-SLVAVDEAHCISQWGHDFRPEYAAL--GTLKQHFDQLPIIALTATADETTRQD 195
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++S L + ++ + R N++ ++ E+ + ++ S+ R + +
Sbjct: 196 ILSRLSLTDPHIYLGSFDRPNIRYTL--------QEKYKPMSQLSSYLRGVRGQCGIVYC 247
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ I+ LC++ I +YH+G+ +R+R+QE F + I +VVATVAFGMG++K
Sbjct: 248 NSRKRVEQITEKLCESGIRAAAYHAGLEFDERARVQEDFQRDDIHIVVATVAFGMGINKP 307
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+HY +P ++E Y QE GRAGRDG + +F D D+ + R
Sbjct: 308 NVRFVVHYDIPRNIESYYQETGRAGRDGLPAEAVMFYDPSDLAWLR 353
>gi|423482562|ref|ZP_17459252.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6X1-2]
gi|401143866|gb|EJQ51400.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6X1-2]
Length = 705
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDILIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 MDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
S LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CSTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|336115545|ref|YP_004570312.1| ATP-dependent DNA helicase RecQ [Bacillus coagulans 2-6]
gi|335368975|gb|AEH54926.1| ATP-dependent DNA helicase RecQ [Bacillus coagulans 2-6]
Length = 725
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/342 (39%), Positives = 195/342 (57%), Gaps = 13/342 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E ++L+ YGYD FR GQ I ++D K T+ ++PTG GKS+CYQ+PAM+L G+TLV
Sbjct: 2 EKAKQVLKQYYGYDHFRRGQEAIISRIMDGKDTLGMMPTGGGKSVCYQVPAMLLSGVTLV 61
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL++LM DQ+ L + I +++SS P E+ E + GA K+++++PER
Sbjct: 62 ISPLISLMKDQVDTLSGMGIPATYVNSSLDPTEINERLAAASKGAYKLIYLAPERLEFPP 121
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
FL + + +SL+ VDEAHC+S+W H+FRPSY RL L+ LA+TATAT
Sbjct: 122 FLHLLENIN-VSLIAVDEAHCISQWGHDFRPSY-RLIEKLISQFKPKPVTLALTATATPQ 179
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV-DEVFSFHRSSKHYY 424
+D+ L IP N + R+NL V + +R A+V D + S Y
Sbjct: 180 VKKDICQLLMIPEENTVATGFARENLHFQVV-----KGQDRDAFVLDYILKNKNQSGIIY 234
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ E + I +L N I YH+G+ +R Q+ F + + V+VAT AFGM
Sbjct: 235 ----TATRKEAERIYHFLVKNGIRAGKYHAGMKETERDSFQDRFLYDDVSVMVATSAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK +V VIHY +P+++E Y QE GRAGRDG S C L
Sbjct: 291 GIDKSNVRFVIHYHMPKNMEAYYQEAGRAGRDGEESDCILLF 332
>gi|423611203|ref|ZP_17587064.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD107]
gi|401248656|gb|EJR54978.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD107]
Length = 705
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 MDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
S LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CSTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|75762555|ref|ZP_00742410.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218897840|ref|YP_002446251.1| ATP-dependent DNA helicase RecQ [Bacillus cereus G9842]
gi|228901356|ref|ZP_04065548.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis IBL 4222]
gi|423562776|ref|ZP_17539052.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-A1]
gi|434375793|ref|YP_006610437.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis HD-789]
gi|74489957|gb|EAO53318.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218543132|gb|ACK95526.1| ATP-dependent DNA helicase RecQ [Bacillus cereus G9842]
gi|228858280|gb|EEN02748.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis IBL 4222]
gi|401199914|gb|EJR06807.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-A1]
gi|401874350|gb|AFQ26517.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis HD-789]
Length = 705
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|395218411|ref|ZP_10402063.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
gi|394454486|gb|EJF09132.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
Length = 624
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 208/347 (59%), Gaps = 12/347 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+L +GY+ FR Q I +L +K ++++PTG GKS+CYQ+PA+++PGL +VV PL+A
Sbjct: 12 LKLYFGYEQFRPMQEHIITNILQQKDVVVLMPTGGGKSVCYQVPAVVMPGLCVVVSPLIA 71
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I +L+SSQ +E + G IK+L+VSPE+ L+A F S F
Sbjct: 72 LMKDQVEALLANGIPAAYLNSSQTADEQYQIEEKSLAGQIKLLYVSPEKLLSAGFFS-FL 130
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+SL VDEAHC+S W H+FRP Y +LRA L+ + ++A+TATA T +D+
Sbjct: 131 KRLQVSLFAVDEAHCISAWGHDFRPEYTQLRA--LKQQFPAVPVVALTATADKLTQKDIQ 188
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L++ + + R N+ L V L G NR N+ + ++ R + I +S K
Sbjct: 189 EQLQLRQPEVFVASFDRPNINLMV-LPGQNRFNKITDFLS-----RRHGQPGIIYCLSRK 242
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E+ ++ L +N + YH+G+ A+ RS+ QE F + + +V AT+AFGMG+DK +V
Sbjct: 243 ATES--LAGKLRENGYNATFYHAGMSAQQRSKAQESFLRDDVLIVCATIAFGMGIDKSNV 300
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
VIHY+LP+++E Y QEIGRAGRDG S LF LR+++
Sbjct: 301 RWVIHYNLPKNVEGYYQEIGRAGRDGAKSDALLFYSFADVMNLRTML 347
>gi|24373927|ref|NP_717970.1| ATP-dependent DNA helicase RecQ family [Shewanella oneidensis MR-1]
gi|24348355|gb|AAN55414.1| ATP-dependent DNA helicase RecQ family [Shewanella oneidensis MR-1]
Length = 654
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 186/596 (31%), Positives = 282/596 (47%), Gaps = 67/596 (11%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+ FR GQ E I +L +S++ + PTG+GKSLCYQ A+ LP LTLVV PL+A
Sbjct: 18 LQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPLLA 77
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQL L I + S+ PE+ + +R + G +K+L VS ERF N F
Sbjct: 78 LIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQLKLLMVSVERFKNERFRQFIQ 137
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ L S++VVDEAHC+SEW HNFRP Y++L L++ +L +TATAT +D+
Sbjct: 138 SIPL-SMLVVDEAHCISEWGHNFRPDYLKLPDYC--RELSIPLVLLLTATATRKVKQDMA 194
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+I +++Q R NL L+V + +N+ ++ SF + Y LQ + +
Sbjct: 195 IRFDIKPQHIVQTGFYRSNLDLTVLPVAS--ENKLRILKQQLQSFDGAGIVYVTLQHTAE 252
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
++ LC ++YH+G R +IQ F + ++VVAT+AFGMG+DK ++
Sbjct: 253 E-----VASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKSNI 307
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVDEYAIN 549
VIHY LP+S+E Y QEIGRAGRDG+LS+C LD I + + +Y D + +I
Sbjct: 308 RFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLDGIN--TVENFVYGDTPELASIA 365
Query: 550 KFLCQVFTNGMNSHG--KLCSLVKESASRKFDIKEEVMLTLLTCLEL-----------GE 596
+ + ++ +L L +S R +K TLL LEL +
Sbjct: 366 TVIDSISQETQANYWEVQLNQLANQSNIRLLPLK-----TLLVQLELQGVIKPLYAYYAD 420
Query: 597 IQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGA 656
+QY L P+ V + ++ + I ++ K+ D + + GA
Sbjct: 421 VQYRFLQPQAHVLSQFS---------PERQAFLTQIFTHTQMKRVWGSLDFNALYQATGA 471
Query: 657 TTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVEN---CKV 713
V L L + I E K Y + V L+ L + ++ E ++
Sbjct: 472 ERNRVLAALEYLASQQLIELETKQITDVYQVETVKLSTPTLAKDLYHYFADKEAKEVARI 531
Query: 714 RKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS 769
+L R F T CL N+ YF DDN P G S
Sbjct: 532 AQLVRFFEL-------------------TTCLNYNLARYF--DDNA-APKSCGHCS 565
>gi|423593267|ref|ZP_17569298.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD048]
gi|401226933|gb|EJR33463.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD048]
Length = 705
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CTTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|408489878|ref|YP_006866247.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
gi|408467153|gb|AFU67497.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
Length = 694
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 204/346 (58%), Gaps = 17/346 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I+ VL K ++V+PTG GKS+C+Q+PA+ GLTLV+ PL+A
Sbjct: 13 LKKYFGYDSFRKDQAEIIEHVLSGKDALVVMPTGGGKSMCFQLPALKFEGLTLVISPLIA 72
Query: 253 LMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I F +S+Q PE E + IK+L+ +PE L
Sbjct: 73 LMKDQVDGLKSNGIPADFYNSTQTPEVQLEIKSKVANRDIKLLYTAPESLSG---LQEIL 129
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ + IS V VDEAHC+S W H+FRPSY +L L+ L I+A+TATA TT +D++
Sbjct: 130 SETYISCVAVDEAHCISSWGHDFRPSYQQL--GFLKKSLPKTPIIALTATADKTTRKDIL 187
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L IP + + R+N+ L V ++ ++R + E F R + +S K
Sbjct: 188 KQLGIPKAKAFLSSFDRENIFLEVRVA-----DKRLKQI-ENFLLRRKDEAGIAYCLSRK 241
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
T+ +++ L K+YH+G+P+++RS+IQE F +K +++ ATVAFGMG+DK +V
Sbjct: 242 --STEKLAKDLTKKGFKAKAYHAGLPSEERSKIQEEFVYDKTQIICATVAFGMGIDKSNV 299
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYC---HLFLDDITYFRL 534
VIHY++P++LE Y QEIGRAGRDG + H + D I Y R
Sbjct: 300 RWVIHYNMPKNLEGYYQEIGRAGRDGLQANALMFHSYADVIQYKRF 345
>gi|146293121|ref|YP_001183545.1| ATP-dependent DNA helicase RecQ [Shewanella putrefaciens CN-32]
gi|145564811|gb|ABP75746.1| ATP-dependent DNA helicase, RecQ family [Shewanella putrefaciens
CN-32]
Length = 659
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 174/549 (31%), Positives = 279/549 (50%), Gaps = 32/549 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+ +FR+GQ + I +L +S++ + PTG+GKSLCYQ A+ LP LTLV+ PL+
Sbjct: 20 LLQQQFGFSAFRNGQYQTISQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVISPLL 79
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I + S+ E+ + + + G +K+L VS ERF N F F
Sbjct: 80 ALMKDQLEFLQTKGIAAASIDSTLNAEQTKQVMIDARSGKLKILMVSVERFKNERFRQ-F 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ IS++V+DEAHC+SEW HNFRP Y++L R L + +L +TATAT D+
Sbjct: 139 IQSVAISMLVIDEAHCISEWGHNFRPDYLKLPD--YRRELGIPLVLLLTATATRKVKLDM 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSV--SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+ +I +++Q R NL L V LS Q + + +V + + Y LQ
Sbjct: 197 AARFDIAPKHIVQTGFYRPNLDLCVIPVLS----QEKNALLYRQVRQYAGAGIVYVTLQH 252
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + ++ L I ++YH+G R ++Q F +K++VVVAT+AFGMG+DK
Sbjct: 253 TAEQ-----VADLLTQEGILARAYHAGFDDVKRQQVQHDFMQDKVQVVVATIAFGMGIDK 307
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
++ VIHY LP+S+E Y QEIGRAGRDG+ S+C + + + +Y D + I
Sbjct: 308 SNIRFVIHYDLPKSIENYSQEIGRAGRDGQHSHCVTLANLDGMNTVENFVYGDTPERSGI 367
Query: 549 N---KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPE 605
+ + Q G H +L +L S R+ +K TLL LE+ + ++ L
Sbjct: 368 ELIIENIKQEQHQGRWEH-QLNTLSSISNIRQLPLK-----TLLVQLEIQGV--IKPLYA 419
Query: 606 LKVTCTLNFHKTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDV 661
T F K +L+ ++ ++ I + K+ V D+ + ++ GA V
Sbjct: 420 YYADVTYRFIKDKSEILSAFNPERQAFLSQIFTHTHMKRVWGVLDVDALYSATGAERSKV 479
Query: 662 SNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFH 721
L L + I E K Y + +L +L ++ E E+ ++ ++ ++
Sbjct: 480 LTALEYLADKQWIELETKKITDVYQVNNTILAQISLVDNLHQYFVEKEHKEILRIGQL-- 537
Query: 722 AAVFAVDVC 730
F +D C
Sbjct: 538 VRFFELDTC 546
>gi|410620233|ref|ZP_11331115.1| ATP-dependent DNA helicase RecQ [Glaciecola polaris LMG 21857]
gi|410160328|dbj|GAC35253.1| ATP-dependent DNA helicase RecQ [Glaciecola polaris LMG 21857]
Length = 669
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 199/328 (60%), Gaps = 11/328 (3%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMI 255
++G+ FR GQ +A+ +L S++ + PTG+GKSLCYQ A+ LP LTL+V PL+ALM
Sbjct: 22 LFGFTQFRGGQQQAVTQLLSGHSSLAIFPTGSGKSLCYQFCAVHLPHLTLLVSPLLALMK 81
Query: 256 DQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS 314
DQL L I G + S+ +E T+ ++ G IK+L VS ERF N F F +
Sbjct: 82 DQLAFLQGKGIAAGSIDSTLSADEQRTTMERVRSGEIKILMVSVERFKNERFRQ-FIESV 140
Query: 315 LISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374
+S++V+DEAHC+SEW HNFRP Y++L RA+LN+ +L +TATAT D+
Sbjct: 141 DVSMLVIDEAHCISEWGHNFRPDYLKLPD--YRAQLNIPLVLLLTATATKKVKLDMAKRF 198
Query: 375 EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
I +++Q R NL L + L+ +Q + + + + I+ ++ +H
Sbjct: 199 AILPEHIVQTGFYRQNLDLQI-LAVPEQQKAHT-----LLQLVQRQQGCGIVYVTLQH-T 251
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
+ +++ L N + K+YH+G+ + R +Q+ F +VVVAT+AFGMG+DK D+ V
Sbjct: 252 AEQVAQQLAANGVVAKAYHAGLADEIRQGVQQDFMDGHTQVVVATIAFGMGIDKSDIRFV 311
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+HY LP+S+E Y QEIGRAGRDG++SYC
Sbjct: 312 VHYDLPKSIENYSQEIGRAGRDGQMSYC 339
>gi|329922237|ref|ZP_08277939.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. HGF5]
gi|328942274|gb|EGG38544.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. HGF5]
Length = 627
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 198/335 (59%), Gaps = 11/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ YGY FRDGQ + + +L + T+ ++PTG GKS+CYQIPA++ PGLTLVV PL++
Sbjct: 20 LQKYYGYPDFRDGQKKIVASLLTGQDTLGIMPTGGGKSICYQIPALLSPGLTLVVSPLIS 79
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + +++S+ +EV E IR + G +K+L+V+PER L D+
Sbjct: 80 LMKDQVDALTTAGVAAAYINSTLSGKEVNERIRAAKRGDLKLLYVAPER-LELDWFREEM 138
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A IS+V VDEAHCVS+W H+FR SY+ + A ++ N + A TATAT + D+
Sbjct: 139 AGLDISIVAVDEAHCVSQWGHDFRTSYLSV-APFVKGLPNRPIVAAFTATATPEVMEDMQ 197
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L + + RDNL++SV L G N++ + V + S H + +
Sbjct: 198 RLLRLEQPQVFVTGLGRDNLEMSV-LRGENKR-------EFVLDYAASHTHQPGIIYAAT 249
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E D + + L + YH+G+ +R+ QE F + IRV+VAT AFGMG+DK +V
Sbjct: 250 RKEVDDLCQRLQAKGLLAGRYHAGMSDAERADSQEAFLYDDIRVIVATNAFGMGIDKSNV 309
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
VIHY++P+++E YVQE GRAGRDG S C L
Sbjct: 310 RYVIHYNMPKNMESYVQEAGRAGRDGEPSQCILLF 344
>gi|325956686|ref|YP_004292098.1| ATP-dependent DNA helicase RecQ [Lactobacillus acidophilus 30SC]
gi|325333251|gb|ADZ07159.1| ATP-dependent DNA helicase RecQ [Lactobacillus acidophilus 30SC]
Length = 588
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 154/404 (38%), Positives = 224/404 (55%), Gaps = 35/404 (8%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N ++L+ +GYDSFR GQ + I +VL+K++ + V+PTGAGKSLCYQ+PA++ G+TLV+
Sbjct: 2 NPEKVLKQTFGYDSFRPGQKKVIDLVLNKQNVLAVMPTGAGKSLCYQVPALMNAGVTLVI 61
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I+ L+S+ EEV +R G IK+++++PER L D+
Sbjct: 62 SPLISLMKDQIDTLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLIYITPER-LAIDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
I LV VDEAHC+S+W H+FRP+Y +L + L++R N ILA+TATAT
Sbjct: 121 FRYQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQLLDGINSLKSRPN---ILALTATATP 177
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L IP N+I + R NL V S N Y+ + H +
Sbjct: 178 AVQDDICEQLNIPKQNMIITSFARPNLSFKVVNSPQN----TPLYIAQYIKMH-PDEAGI 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I + K E+ ++ YL ISV +YH G+ K+R +QE F ++++V+VAT AFGM
Sbjct: 233 IYTNTRKKVES--LTDYLAKKGISVGAYHGGMETKERDEVQEAFQFDQVQVIVATNAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR------------LSYCHLFLDDITY- 531
G+DK +V VIH S ++E Y QE GRAGRDG L F+D+ T
Sbjct: 291 GIDKSNVRFVIHASSARNIESYYQEAGRAGRDGEESEAIMIYHPGDLRQYRFFIDESTAD 350
Query: 532 FRLRSLMYS--DGVDEYA-----INKFLCQVFTNGMNSHGKLCS 568
+ R L Y + +YA + +F+ + F GK CS
Sbjct: 351 EKYRELQYQKLQAITDYANTGECLQQFIVRYFGQDCEPCGK-CS 393
>gi|261408935|ref|YP_003245176.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. Y412MC10]
gi|261285398|gb|ACX67369.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. Y412MC10]
Length = 627
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 198/335 (59%), Gaps = 11/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ YGY FRDGQ + + +L + T+ ++PTG GKS+CYQIPA++ PGLTLVV PL++
Sbjct: 20 LQKYYGYPDFRDGQKKIVASLLTGQDTLGIMPTGGGKSICYQIPALLSPGLTLVVSPLIS 79
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + +++S+ +EV E IR + G +K+L+V+PER L D+
Sbjct: 80 LMKDQVDALTTAGVAAAYINSTLSGKEVNERIRAAKRGDLKLLYVAPER-LELDWFREEM 138
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A IS+V VDEAHCVS+W H+FR SY+ + A ++ N + A TATAT + D+
Sbjct: 139 AGLDISIVAVDEAHCVSQWGHDFRTSYLSV-APFVKGLPNRPIVAAFTATATPEVMEDMQ 197
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L + + RDNL++SV L G N++ + V + S H + +
Sbjct: 198 RLLRLEQPQVFVTGLGRDNLEMSV-LRGENKR-------EFVLDYAASHTHQPGIIYAAT 249
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E D + + L + YH+G+ +R+ QE F + IRV+VAT AFGMG+DK +V
Sbjct: 250 RKEVDDLCQRLQAKGLLAGRYHAGMSDAERADSQEAFLYDDIRVIVATNAFGMGIDKSNV 309
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
VIHY++P+++E YVQE GRAGRDG S C L
Sbjct: 310 RYVIHYNMPKNMESYVQEAGRAGRDGEPSQCILLF 344
>gi|228939936|ref|ZP_04102512.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228972828|ref|ZP_04133425.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979410|ref|ZP_04139744.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis Bt407]
gi|384186880|ref|YP_005572776.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410675184|ref|YP_006927555.1| putative ATP-dependent DNA helicase RecQ [Bacillus thuringiensis
Bt407]
gi|452199240|ref|YP_007479321.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228780310|gb|EEM28543.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis Bt407]
gi|228786879|gb|EEM34861.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819727|gb|EEM65776.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326940589|gb|AEA16485.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409174313|gb|AFV18618.1| putative ATP-dependent DNA helicase RecQ [Bacillus thuringiensis
Bt407]
gi|452104633|gb|AGG01573.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 705
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|229179100|ref|ZP_04306457.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 172560W]
gi|228604468|gb|EEK61932.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 172560W]
Length = 705
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L ILA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLILALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|423413420|ref|ZP_17390540.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3O-2]
gi|423430795|ref|ZP_17407799.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4O-1]
gi|401101518|gb|EJQ09507.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3O-2]
gi|401118872|gb|EJQ26700.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4O-1]
Length = 705
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L ILA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLILALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|228908560|ref|ZP_04072400.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis IBL 200]
gi|228851113|gb|EEM95927.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis IBL 200]
Length = 705
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLLQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|228965757|ref|ZP_04126836.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559862|ref|YP_006602586.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis HD-771]
gi|423360197|ref|ZP_17337700.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD022]
gi|228793958|gb|EEM41482.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401082287|gb|EJP90557.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD022]
gi|401788514|gb|AFQ14553.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis HD-771]
Length = 705
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|229145390|ref|ZP_04273778.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST24]
gi|228638062|gb|EEK94504.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST24]
Length = 705
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 198/335 (59%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYQDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|157962059|ref|YP_001502093.1| ATP-dependent DNA helicase RecQ [Shewanella pealeana ATCC 700345]
gi|157847059|gb|ABV87558.1| ATP-dependent DNA helicase, RecQ family [Shewanella pealeana ATCC
700345]
Length = 641
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/410 (37%), Positives = 227/410 (55%), Gaps = 14/410 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
+N LL +G+ FR+GQ E ++ +L+ +S + PTG+GKSLCYQ+PA+ LP LTLV
Sbjct: 2 DNAHALLSQYFGFQQFREGQEEVVQNILNGQSAAAIFPTGSGKSLCYQLPALALPHLTLV 61
Query: 247 VCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL+ALM DQL+ L I + S+Q E+ + I + G IK+L +S ER LN +
Sbjct: 62 VSPLLALMDDQLQFLNKKGISAASIDSTQTNEQASAVIEGVTSGRIKILMISVER-LNNE 120
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F +T IS++V+DEAHC+SEW HNFRP Y++L A + +L + +L +TATAT
Sbjct: 121 RFRRFISTVPISMLVIDEAHCISEWGHNFRPDYLKLPA--YQRQLQIPQVLLLTATATPK 178
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQL-SVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
+ D+ I + R NL L +V +S ++ N ++ EV H S Y
Sbjct: 179 VIEDMGKKFGIAEQCVTLTGFYRPNLNLQTVGISSPDKLNYLCDWL-EVRKEH-SGIVYV 236
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
LQ + + LI + S +YH+G+ + R IQ F S ++ ++VAT+AFGM
Sbjct: 237 TLQQTAEFVANALIKK-----GFSALAYHAGMDSDKRKSIQAQFMSGEVPIIVATIAFGM 291
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD 544
G+DK D+ V HY LP+S+E Y QEIGRAGRDG S C + + L + +Y D +
Sbjct: 292 GIDKSDIRFVAHYDLPKSIENYAQEIGRAGRDGFSSDCLVLANRDNLNVLENFVYGDTPE 351
Query: 545 EYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLEL 594
AI + ++ S + L+ S +I+ + TLL LE+
Sbjct: 352 LSAIEHVIDEIKREAQTS--SVWELMLNPLSSASNIRILSLKTLLVYLEM 399
>gi|411009488|ref|ZP_11385817.1| DNA helicase [Aeromonas aquariorum AAK1]
Length = 642
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 156/408 (38%), Positives = 215/408 (52%), Gaps = 17/408 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +G+D R GQ E I +L K+ + PTG+GKSLCYQ+PA+ LP LTLV+ PL+
Sbjct: 5 LLTRHFGFDRLRPGQEEVISRLLAGKNAAAIFPTGSGKSLCYQLPALALPHLTLVISPLI 64
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I L SS EE ++ G +K+L +S ER N F
Sbjct: 65 ALMHDQLAFLRSKGIAAATLDSSLTAEESRRVMQQANDGQLKILMISVERLKNERFRRFI 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT + D+
Sbjct: 125 QQVPL-SMLVVDEAHCISEWGHNFRPDYLKLPD--YRRELAIPQVLLLTATATPAVMADM 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ +I LI R NL L+V L R + R I+ ++
Sbjct: 182 QAKFDIEDDGLIVTGFYRANLDLAVIPLPAEARDSWLHG------ELARDPAAPTIIYVT 235
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+H + + L I ++YH+G+ A RS+IQ F + K+ +VAT+AFGMG+DK
Sbjct: 236 LQH-TAEACAAQLQQRGIRARAYHAGLDATLRSQIQHDFMTGKLDCIVATIAFGMGIDKA 294
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
D+ VIHY LP+S+E Y QEIGRAGRDG+ S C + + L + +Y D D AI
Sbjct: 295 DIRRVIHYDLPKSIENYSQEIGRAGRDGQPSRCIVLANRSQLPVLENFVYGDTPDRLAIV 354
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
L + +G L L E+ R+ +K TLL LE+ I
Sbjct: 355 ALLEILLQSGSEWEFSLLRLSNETNIRQLPLK-----TLLVYLEMAGI 397
>gi|206971887|ref|ZP_03232836.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1134]
gi|206733272|gb|EDZ50445.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1134]
Length = 705
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L ILA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLILALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|296503352|ref|YP_003665052.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis BMB171]
gi|296324404|gb|ADH07332.1| ATP-dependent DNA helicase recQ [Bacillus thuringiensis BMB171]
Length = 705
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 198/335 (59%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYQDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|330829733|ref|YP_004392685.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii B565]
gi|423209573|ref|ZP_17196127.1| RecQ family ATP-dependent DNA helicase [Aeromonas veronii AER397]
gi|328804869|gb|AEB50068.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii B565]
gi|404617431|gb|EKB14367.1| RecQ family ATP-dependent DNA helicase [Aeromonas veronii AER397]
Length = 637
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 157/409 (38%), Positives = 223/409 (54%), Gaps = 19/409 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +G+ + R GQ I VL +S + PTG+GKSLCYQ+PA+ L LTLV+ PL+
Sbjct: 5 LLNQYFGFSALRPGQEAVISRVLAGQSAAAIFPTGSGKSLCYQLPALALHHLTLVISPLL 64
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I L SSQ PEE ++ G +K+L +S ER N F
Sbjct: 65 ALMHDQLAFLKSKGISAATLDSSQSPEESRRVMQQALDGQLKILMISVERLKNERFRRFI 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L SL+VVDEAHC+SEW HNFRP Y++L + R L + +L +TATAT ++D+
Sbjct: 125 QQVPL-SLLVVDEAHCISEWGHNFRPDYLKLPS--YRHDLKIPQVLLLTATATPAVIQDM 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYI-LQI 428
+ I ++ R NL L+V LS + R S E+ + ++ Y+ LQ
Sbjct: 182 QTKFGIAPEGVVVTGFYRPNLDLAVIPLSPDARD---SWLAQELANDPAAATIVYVTLQH 238
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + LI I+ ++YH+G+ + RS+IQ F + K+ +VAT+AFGMG+DK
Sbjct: 239 TAEACAEQLIR-----EGINARAYHAGLDSALRSQIQHDFMAGKVDCIVATIAFGMGIDK 293
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
D+ VIHY LP+S+E Y QEIGRAGRDG+ S C + + L + +Y D D AI
Sbjct: 294 ADIRRVIHYDLPKSIENYSQEIGRAGRDGQPSRCIVLANQSQLPVLENFVYGDTPDLSAI 353
Query: 549 NKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
+ L + +G L L ++ R+ +K TLL LE+ I
Sbjct: 354 LQLLAIIKQSGNEWEFTLLRLSNDTNIRQLPLK-----TLLVYLEMAGI 397
>gi|206973530|ref|ZP_03234448.1| ATP-dependent DNA helicase RecQ [Bacillus cereus H3081.97]
gi|206747686|gb|EDZ59075.1| ATP-dependent DNA helicase RecQ [Bacillus cereus H3081.97]
Length = 705
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/336 (40%), Positives = 198/336 (58%), Gaps = 11/336 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL
Sbjct: 7 KLLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPL 66
Query: 251 VALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +++SS E + I+L++ G K+L+V+PER + +F+
Sbjct: 67 ISLMKDQVDTLVQNGISATYINSSISITEANQRIQLVKQGHYKLLYVAPERLDSMEFVDQ 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D
Sbjct: 127 LIDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDD 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ + L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 185 ICNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAA 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK
Sbjct: 238 TRKV-VDQLYENLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKS 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
++ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 297 NIRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|414074834|ref|YP_007000051.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413974754|gb|AFW92218.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 593
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 216/358 (60%), Gaps = 15/358 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ ++GYD FR+GQ + I+ VL ++T+ +LPTGAGKS+CYQ+PA+I GLTLV+
Sbjct: 2 NLEIKLKEIFGYDYFRNGQKQIIEQVLAGQATLGILPTGAGKSICYQLPAVIQSGLTLVI 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I F++S E + +R ++ G IK+LFV+PERF + D+
Sbjct: 62 SPLISLMKDQVDQLNIAGIPATFINSILEEGESYQRMRQVENGEIKLLFVAPERF-SLDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
+ F I+LV +DEAHC+S+W H+FRPSY+ A L L R V LA+TATAT
Sbjct: 121 FNNFLQKLPINLVAIDEAHCISQWGHDFRPSYVDFAAHLKDLPTRPTV---LALTATATP 177
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ S L I S+ I+ LR+NL+ V + G +++ Y+ ++ S+
Sbjct: 178 KVADDIQSLLSISPSHTIKTGFLRENLRFEV-VKGMDKRTFLKNYLK-----NQESESAG 231
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ S + E + I +L N YH+G+ ++R QELF +++ ++VAT AFGM
Sbjct: 232 IIYASTRK-EVEEICEWLNHNHFKAVRYHAGLSERERQMNQELFLFDEVPIMVATNAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
G++K +V VIHY++P ++E Y QE GRAGRDG L + L R+R+ + G
Sbjct: 291 GINKPNVRFVIHYAIPATIESYYQEAGRAGRDG-LESDAILLFSPNDLRIRNFLIEQG 347
>gi|423384359|ref|ZP_17361615.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1X1-2]
gi|423529268|ref|ZP_17505713.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB1-1]
gi|401640260|gb|EJS57992.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1X1-2]
gi|402448697|gb|EJV80536.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB1-1]
Length = 705
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|315038238|ref|YP_004031806.1| ATP-dependent DNA helicase RecQ [Lactobacillus amylovorus GRL 1112]
gi|312276371|gb|ADQ59011.1| ATP-dependent DNA helicase RecQ [Lactobacillus amylovorus GRL 1112]
Length = 588
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 154/404 (38%), Positives = 223/404 (55%), Gaps = 35/404 (8%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N ++L+ +GYDSFR GQ + I +VL K++ + V+PTGAGKSLCYQ+PA++ G+TLV+
Sbjct: 2 NPEKVLKQTFGYDSFRPGQKKVIDLVLSKQNVLAVMPTGAGKSLCYQVPALMNAGVTLVI 61
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I+ L+S+ EEV +R G IK+++++PER L D+
Sbjct: 62 SPLISLMKDQIDTLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLIYITPER-LAIDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
I LV VDEAHC+S+W H+FRP+Y +L + L++R N ILA+TATAT
Sbjct: 121 FRYQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQLLDGINSLKSRPN---ILALTATATP 177
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L IP N+I + R NL V S N Y+ + H +
Sbjct: 178 AVQDDICEQLNIPKQNMIITSFARPNLSFKVVNSPQN----TPLYIAQYIKMH-PDEAGI 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I + K E+ ++ YL ISV +YH G+ K+R +QE F ++++V+VAT AFGM
Sbjct: 233 IYTNTRKKVES--LTDYLAKKGISVGAYHGGMETKERDEVQEAFQFDQVQVIVATNAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR------------LSYCHLFLDDITY- 531
G+DK +V VIH S ++E Y QE GRAGRDG L F+D+ T
Sbjct: 291 GIDKSNVRFVIHASSARNIESYYQEAGRAGRDGEESEAIMIYHPGDLRQYRFFIDESTAD 350
Query: 532 FRLRSLMYS--DGVDEYA-----INKFLCQVFTNGMNSHGKLCS 568
+ R L Y + +YA + +F+ + F GK CS
Sbjct: 351 EKYRELQYQKLQAITDYANTGECLQQFIVRYFGQDCEPCGK-CS 393
>gi|228953148|ref|ZP_04115207.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229080004|ref|ZP_04212535.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock4-2]
gi|229151025|ref|ZP_04279236.1| ATP-dependent DNA helicase RecQ [Bacillus cereus m1550]
gi|423424939|ref|ZP_17401970.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3X2-2]
gi|423436318|ref|ZP_17413299.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4X12-1]
gi|423506474|ref|ZP_17483064.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HD73]
gi|449089824|ref|YP_007422265.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228632585|gb|EEK89203.1| ATP-dependent DNA helicase RecQ [Bacillus cereus m1550]
gi|228703383|gb|EEL55838.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock4-2]
gi|228806563|gb|EEM53123.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401113711|gb|EJQ21580.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG3X2-2]
gi|401122932|gb|EJQ30716.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4X12-1]
gi|402447915|gb|EJV79764.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HD73]
gi|449023581|gb|AGE78744.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 705
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|423655607|ref|ZP_17630906.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD200]
gi|401292875|gb|EJR98529.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD200]
Length = 705
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-HILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|423469086|ref|ZP_17445830.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6O-2]
gi|402440437|gb|EJV72430.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6O-2]
Length = 705
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|423453794|ref|ZP_17430647.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5X1-1]
gi|401137476|gb|EJQ45057.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5X1-1]
Length = 705
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|423559544|ref|ZP_17535846.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MC67]
gi|401188048|gb|EJQ95117.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MC67]
Length = 705
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|357008934|ref|ZP_09073933.1| putative ATP-dependent DNA helicase [Paenibacillus elgii B69]
Length = 686
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 200/336 (59%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LLR YGY FRDGQ + I+ +L + T+ ++PTG GKS+CYQ+PA+++ G T+VV PL+
Sbjct: 102 LLRKYYGYPDFRDGQKQVIESLLSGRDTLGIMPTGGGKSICYQVPALMMDGTTIVVSPLI 161
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + +++SS +V IR + G K+L+V+PER + FL +
Sbjct: 162 SLMKDQVDGLDSIGVPAAYINSSLSYAQVEMRIRKAERGEYKLLYVAPERLESERFLELL 221
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ ++ +V VDEAHCVS+W H+FRPSYMR+ L+ + + A TATAT D+
Sbjct: 222 SGL-VVPMVAVDEAHCVSQWGHDFRPSYMRIN-ELVSHLPDRPLLAAFTATATDQVREDI 279
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + R+NL SV + G N+++ Y+ E H + +
Sbjct: 280 VKHLKLSEPQVFVTGFARENLSFSV-IKGENKRDVLMGYIRE----HAGEAG---IVYAA 331
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + YL ++ YH+G+ K+R+ QE F +++RV+VA+ AFGMG+DK +
Sbjct: 332 TRKEVDQLCEYLLRQGVAAGKYHAGLTDKERADAQERFLYDEVRVMVASNAFGMGIDKSN 391
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V V+H+++P+++E Y QE GRAGRDG S C L
Sbjct: 392 VRYVVHFNMPKNMEAYYQEAGRAGRDGEPSDCMLLF 427
>gi|386313742|ref|YP_006009907.1| RecQ familyATP-dependent DNA helicase [Shewanella putrefaciens 200]
gi|319426367|gb|ADV54441.1| ATP-dependent DNA helicase, RecQ family [Shewanella putrefaciens
200]
Length = 659
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 174/549 (31%), Positives = 278/549 (50%), Gaps = 32/549 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +G+ +FR+GQ + I +L +S++ + PTG+GKSLCYQ A+ LP LTLVV PL+
Sbjct: 20 LLQQQFGFSAFRNGQYQTISQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVSPLL 79
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I + S+ E+ + + + G + +L VS ERF N F F
Sbjct: 80 ALMKDQLEFLQAKGIAAASIDSTLNAEQTKQVMMDARSGKLNILMVSVERFKNERFRQ-F 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ IS++V+DEAHC+SEW HNFRP Y++L R L + +L +TATAT D+
Sbjct: 139 IQSVAISMLVIDEAHCISEWGHNFRPDYLKLPD--YRRELGIPLVLLLTATATRKVKLDM 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSV--SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+ +I +++Q R NL L V LS Q + + +V + + Y LQ
Sbjct: 197 AARFDIAPKHIVQTGFYRPNLDLCVIPVLS----QEKNALLYRQVRQYAGAGIVYVTLQH 252
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + ++ L I ++YH+G R ++Q F +K++VVVAT+AFGMG+DK
Sbjct: 253 TAEQ-----VADLLTQEGILARAYHAGFDDVKRQQVQHDFMQDKVQVVVATIAFGMGIDK 307
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
++ VIHY LP+S+E Y QEIGRAGRDG+ S+C + + + +Y D + I
Sbjct: 308 SNIRFVIHYDLPKSIENYSQEIGRAGRDGQHSHCVTLANLDGMNTVENFVYGDTPERSGI 367
Query: 549 N---KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPE 605
+ + Q G H +L +L S R+ +K TLL LE+ + ++ L
Sbjct: 368 ELIIENIKQEQHQGRWEH-QLNTLSSISNIRQLPLK-----TLLVQLEIQGV--IKPLYA 419
Query: 606 LKVTCTLNFHKTTPTLLA----DKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDV 661
T F K +L+ ++ ++ I + K+ V D+ + ++ GA V
Sbjct: 420 YYADVTYRFIKDKSEILSAFNPERQAFLSQIFTHTHMKRVWGVLDVDALYSATGAERSKV 479
Query: 662 SNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFH 721
L L + I E K Y + +L +L ++ E E+ ++ ++ ++
Sbjct: 480 LTALEYLADKQWIELETKKITDVYQVNNTILAQISLVDNLHQYFVEKEHKEILRIGQL-- 537
Query: 722 AAVFAVDVC 730
F +D C
Sbjct: 538 VRFFELDTC 546
>gi|30020934|ref|NP_832565.1| ATP-dependent DNA helicase recQ [Bacillus cereus ATCC 14579]
gi|229128155|ref|ZP_04257137.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-Cer4]
gi|29896487|gb|AAP09766.1| ATP-dependent DNA helicase recQ [Bacillus cereus ATCC 14579]
gi|228655430|gb|EEL11286.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-Cer4]
Length = 705
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|229046514|ref|ZP_04192169.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH676]
gi|228724876|gb|EEL76178.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH676]
Length = 705
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|377812469|ref|YP_005041718.1| RecQ familyATP-dependent DNA helicase [Burkholderia sp. YI23]
gi|357937273|gb|AET90831.1| ATP-dependent DNA helicase, RecQ family [Burkholderia sp. YI23]
Length = 598
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 200/345 (57%), Gaps = 11/345 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D +L LR V+G+ R GQ + I+ VLD T+ V+PTGAGKSLCYQ+PA+ G+T+
Sbjct: 16 DHDLETALRKVFGFPHLRPGQEDVIRSVLDGNDTLAVMPTGAGKSLCYQLPALQFDGMTI 75
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
+V PL++LM DQ L I L+S+ E E ++ + I++LFV+PER ++A
Sbjct: 76 IVSPLISLMRDQATKLTEAGIATAVLNSALSASEAREAMQALARHEIRMLFVTPERLVDA 135
Query: 305 DFLSIFTATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
DF + TA + I+L V+DEAHC+S+W H+FRP+Y+ L ++ L +LA+TATA
Sbjct: 136 DFSAELTAKDMPPIALAVIDEAHCISQWGHDFRPAYVELIHAI--KMLGRPPVLALTATA 193
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
T + D++ L++ ++I RDNL +V N + A E+ + S
Sbjct: 194 TPAVIVDIVRELQMRHPHVIHTGVYRDNLHFNVEQLTNPEDRRKRAI--ELATQEAGSGI 251
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y ++ E + + L D +S + YH + + RS Q+ F +++ RV+VAT AF
Sbjct: 252 VYCATVA----ECEALHAALVDAGVSAERYHGKLASGARSDAQDAFMADRARVMVATNAF 307
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GMG+DK D+ VIH +P SL+ Y QE GRAGRDG + C L D
Sbjct: 308 GMGIDKPDIRFVIHAQMPGSLDAYYQEAGRAGRDGEPARCTLLFD 352
>gi|343501055|ref|ZP_08738938.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii ATCC 19109]
gi|418477793|ref|ZP_13046915.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342819043|gb|EGU53890.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii ATCC 19109]
gi|384574570|gb|EIF05035.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 612
Score = 242 bits (618), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 205/346 (59%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY SFRDGQ E I+ + + +++++PTG GKSLCYQIPA+ GLTLVV PL
Sbjct: 19 RILEDVFGYQSFRDGQQEVIESAVAGQDSLVIMPTGGGKSLCYQIPALAREGLTLVVSPL 78
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + GA+K+++VSPER L DF+
Sbjct: 79 ISLMKDQVDQLKANGVAAECVNSTMPREELISVYNRMHSGALKLVYVSPERVLMRDFIER 138
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
SL S++ VDEAHC+S+W H+FRP Y L L+ ++A+TATA T +D
Sbjct: 139 LENISL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKQHFPHIPVMALTATADDATRKD 195
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ ++ E+ V +V F + +
Sbjct: 196 IMQRLQLDEPHTYLGSFDRPNIRYTLV--------EKHKPVSQVVRFLEGQRGSCGIIYC 247
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N + SYH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 248 GSRKKVEMVTEKLCNNGLRAASYHAGLEADERAYVQEAFQRDDIQIVVATVAFGMGINKP 307
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 308 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 353
>gi|423365441|ref|ZP_17342874.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD142]
gi|401090808|gb|EJP98960.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD142]
Length = 705
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 137/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++L G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVLEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|423196489|ref|ZP_17183072.1| RecQ family ATP-dependent DNA helicase [Aeromonas hydrophila SSU]
gi|404632381|gb|EKB29004.1| RecQ family ATP-dependent DNA helicase [Aeromonas hydrophila SSU]
Length = 642
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 156/408 (38%), Positives = 214/408 (52%), Gaps = 17/408 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +G+D R GQ E I +L K+ + PTG+GKSLCYQ+PA+ LP LTLV+ PL+
Sbjct: 5 LLTRHFGFDRLRPGQEEVISRLLAGKNAAAIFPTGSGKSLCYQLPALALPHLTLVISPLI 64
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQL L I L SS EE ++ G +K+L +S ER N F
Sbjct: 65 ALMHDQLAFLRSKGIAAATLDSSLTAEESRRVMQQANDGQLKILMISVERLKNERFRRFI 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++VVDEAHC+SEW HNFRP Y++L R L + +L +TATAT + D+
Sbjct: 125 QQVPL-SMLVVDEAHCISEWGHNFRPDYLKLPD--YRRELAIPQVLLLTATATPAVMADM 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ +I LI R NL L+V L R R I+ ++
Sbjct: 182 QAKFDIEDDGLIVTGFYRANLDLAVIPLPAEARDGWLHG------ELARDPAAPTIIYVT 235
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+H + + L I ++YH+G+ A RS+IQ F + K+ +VAT+AFGMG+DK
Sbjct: 236 LQH-TAEACAAQLQQRWIRARAYHAGLDATLRSQIQHDFMTGKLDCIVATIAFGMGIDKA 294
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
D+ VIHY LP+S+E Y QEIGRAGRDG+ S C + + L + +Y D D AI
Sbjct: 295 DIRRVIHYDLPKSIENYSQEIGRAGRDGQPSRCIVLANRSQLPVLENFVYGDTPDRSAIV 354
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
L + +G L L E+ R+ +K TLL LE+ I
Sbjct: 355 ALLEILLQSGSEWEFSLLRLSNETNIRQLPLK-----TLLVYLEMAGI 397
>gi|302695025|ref|XP_003037191.1| hypothetical protein SCHCODRAFT_255426 [Schizophyllum commune H4-8]
gi|300110888|gb|EFJ02289.1| hypothetical protein SCHCODRAFT_255426 [Schizophyllum commune H4-8]
Length = 717
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 196/654 (29%), Positives = 312/654 (47%), Gaps = 59/654 (9%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVL-DKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
R+L V+GY+SFR Q + I +L D K+ ++V PTG GKSL +QIP M LPGLTLV+ P
Sbjct: 6 RVLNEVFGYESFRLSQEKVIARLLEDNKNALVVFPTGGGKSLTFQIPGMCLPGLTLVISP 65
Query: 250 LVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
L+ALM DQ+ L + L S+ E+ + ++ G++K+L+V+PER N F++
Sbjct: 66 LIALMKDQVDALVRRGVSAASLDSTLTLEQSRDVKSRVKDGSLKILYVAPERLNNEGFMN 125
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+ A I+L+ VDEAHC+S+W +FRP Y+++ A + VE +L +TATAT +
Sbjct: 126 MM-ADVKIALLAVDEAHCISQWGASFRPEYLKI-ARFAEENM-VERVLCLTATATPKVVE 182
Query: 369 DVMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ ++ +I + + A + R NL L V+ NN + S + I+
Sbjct: 183 DICTSFDIEKPDGVFSAPVFRPNLALQVA-HANNLDEKMS----RIMPMLERRTGPAIIY 237
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
++ + D++S YL ++I +YH+GI + +R+ IQ F ++ +V T+AFGMG+D
Sbjct: 238 VTLQQQTQDVVS-YLERHNIHATAYHAGISSDERTAIQNKFMESEKDIVACTIAFGMGID 296
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V H +P++LE Y QE+GRAGRDG S C +F+ L D ++
Sbjct: 297 KADIRQVFHLYMPKTLENYSQEVGRAGRDGLESECLMFISPPDLPTLEGFARGDTCNKKD 356
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELK 607
+ KFL +V + G L ++ +DI+ + L LEL + Y++ + +
Sbjct: 357 LEKFLQEVMSKPTAKDGTL-DFNHYQQAKDYDIRSNALGLLYAQLEL-DYNYMRAITPMY 414
Query: 608 VTCTLNFHKTTPTLLADKDKMVATI-----LKKSETKQGQYVFDIPTVANSIGATTIDVS 662
T L +L D I K + T +Y D+ A+ G D+
Sbjct: 415 TTYELTPAVNFGRVLKDSSIPATAIKTHWRTKNTRTGDKKYELDVVETASVSGVDRTDMV 474
Query: 663 NQLLNLKMRGEITYELKDPAYCY-TIVE-----VPSDFCALSAHLTKWLSEVENCKVRKL 716
Q+ +M G + + Y T ++ P + L+ L L + E + K+
Sbjct: 475 RQIGAWEMDGNVNVKASQVRARYRTFLDNPRPTKPEELKQLTEELYARLLKKEEDDIAKI 534
Query: 717 DRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKI---------GQ 767
++ FA D CL N+ YF GD + VP + G
Sbjct: 535 HQVLD---FAKD-------------DDCLAHNVAKYF-GDPDA-VPGGMCGKCTFCVTGS 576
Query: 768 SSPFLRADIKVF----LQSNLNA---KFTPRAVARILHGIASPAYPSTIWSKTH 814
F A +Q+ LNA + PR +AR+ GI SP + S H
Sbjct: 577 GLDFTPAPPTPIDPSQIQAILNACPERDDPRLLARMAFGITSPRLTALKCSTYH 630
>gi|354580045|ref|ZP_08998950.1| ATP-dependent DNA helicase RecQ [Paenibacillus lactis 154]
gi|353202476|gb|EHB67925.1| ATP-dependent DNA helicase RecQ [Paenibacillus lactis 154]
Length = 626
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 200/335 (59%), Gaps = 11/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ YGY FR+GQ + + +L + T+ ++PTG GKS+CYQIPA++ PGLTLV+ PL++
Sbjct: 20 LQRYYGYPDFREGQKKIVDSLLHGRDTLGIMPTGGGKSICYQIPALMHPGLTLVISPLIS 79
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I+ +++S+ +EV E IR + G +K+L+V+PER L D+
Sbjct: 80 LMKDQVDALTTAGINAAYINSTLSGKEVNERIRAAKRGDLKLLYVAPER-LELDWFREEM 138
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
A+ IS+V VDEAHCVS+W H+FR SY+ + A + + A TATAT + D+
Sbjct: 139 ASLDISIVAVDEAHCVSQWGHDFRTSYLSV-APFVAELPGRPIVAAFTATATPEVMEDMQ 197
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L + + RDNL++SV L G N++ + V ++ S H + +
Sbjct: 198 RLLRLDDPQVFVTGLGRDNLEMSV-LRGENKR-------EFVLNYAASHTHQPGIIYAAT 249
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E D + + L N + YH+G+ +R+ QE F + IRV+VAT AFGMG+DK +V
Sbjct: 250 RKEVDDLCQRLQANGLLAGRYHAGMSDAERAESQEAFLYDDIRVIVATNAFGMGIDKSNV 309
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
VIHY++P+++E YVQE GRAGRDG S C L
Sbjct: 310 RYVIHYNMPKNMESYVQEAGRAGRDGEPSQCILLF 344
>gi|149200174|ref|ZP_01877197.1| putative helicase (recQ-like) protein [Lentisphaera araneosa
HTCC2155]
gi|149136711|gb|EDM25141.1| putative helicase (recQ-like) protein [Lentisphaera araneosa
HTCC2155]
Length = 640
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 193/635 (30%), Positives = 304/635 (47%), Gaps = 54/635 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+ FR+GQ + I +L +S++ + PTG+GKSLCYQ+ A+ LP LTLVV PL+A
Sbjct: 8 LKEKFGFGQFREGQEQTISQLLQGQSSLAIFPTGSGKSLCYQLAALHLPKLTLVVSPLLA 67
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
L+ DQ+ L I + S+Q E+ T I+ G IK+L VS ERF N F +
Sbjct: 68 LIKDQVDFLHSKGIAASSIDSTQSFEQQRMTQEGIRRGEIKILMVSVERFKNERFRNFIE 127
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
L S++VVDEAHC+SEW HNFRP Y++L R + + +L +TATAT D+
Sbjct: 128 GIEL-SMLVVDEAHCISEWGHNFRPDYLKLPD--YRNQFQIPLVLLLTATATRKVKEDMC 184
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI-LQISG 430
I N++Q R NL LS+ + QNE+ + E+ S Y+ LQ S
Sbjct: 185 RKFSIDPQNIVQTGFYRSNLDLSILPTA---QNEKLNKLGEILQAQSGSGIVYVTLQNSA 241
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ +L ++ +YH+G+ R IQ F ++ +++VAT+AFGMG+DK D
Sbjct: 242 EE-----VASFLAQRGLNAVAYHAGLGNDKRQMIQSQFMESQDQIIVATIAFGMGIDKSD 296
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVDEYAI 548
+ VIH+ LP+S+E Y QEIGRAGRDG S C LD +T + + +Y D + +
Sbjct: 297 IRFVIHFDLPKSIENYSQEIGRAGRDGLKSQCLTLANLDGLT--TVENFVYGDTPEPSGV 354
Query: 549 NKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLE-LGEIQYL-QLLPEL 606
+ + + ++ SAS +I++ + TLL LE LG I+ L +
Sbjct: 355 AHVINAIQKESLQGRWEVQLNTLSSAS---NIRQLPLKTLLVQLELLGVIKSLFSYYADF 411
Query: 607 KVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL 666
+ L ++ ++ + ++ I + S K+ V+ P G V+ L
Sbjct: 412 RFKFNLEENEILQKFKGERQEYLSKIFQSSSRKR---VWCEPNFQQVSGERNRMVTA-LE 467
Query: 667 NLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFH----- 721
L + I E K Y + E + +L L+++ + E +++++ +
Sbjct: 468 YLHEKNWIILESKKITDVYQVNETELNDSSLVDSLSQYFLQKEASEIKRIANLVKFFESQ 527
Query: 722 -------AAVF----AVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSP 770
A F AV C C G L L Y + +P++ Q
Sbjct: 528 KCLSCGLAKYFDDQDAVTQCGHCSVCRGQLAK-------LSYSQA---VSLPSQ-EQVQQ 576
Query: 771 FLRADIKVFLQSNLNAKFTPRAVARILHGIASPAY 805
+L D K L S + + R L GI PA+
Sbjct: 577 YLE-DFKQKLPSGSQYQMSSELFCRFLAGIKVPAF 610
>gi|430852695|ref|ZP_19470426.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1258]
gi|430541529|gb|ELA81674.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1258]
Length = 590
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 200/327 (61%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I + ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDIQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 124 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|395242974|ref|ZP_10419962.1| ATP-dependent DNA helicase RecQ [Lactobacillus hominis CRBIP
24.179]
gi|394484794|emb|CCI80970.1| ATP-dependent DNA helicase RecQ [Lactobacillus hominis CRBIP
24.179]
Length = 588
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 146/359 (40%), Positives = 211/359 (58%), Gaps = 13/359 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ V+GY +FR GQ + I +VL+K++T+ V+PTG GKS+CYQIPA+I PG+TLVV PL
Sbjct: 6 QILKQVFGYSNFRPGQEKVISLVLNKQNTLAVMPTGGGKSICYQIPALIQPGVTLVVSPL 65
Query: 251 VALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I L+SS EEV +R G IK+L+V+PER L D+
Sbjct: 66 ISLMKDQIDSLRQNGIVAAALNSSTPQEEVNPILRQAYQGKIKLLYVTPER-LAMDYFRY 124
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
I LV VDEAHC+S+W H+FRP+Y +L ++ + ILA+TATAT +D
Sbjct: 125 QLNFLDIDLVAVDEAHCISQWGHDFRPAYRQLLDG-IKVLKSKPSILALTATATPRVQKD 183
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L+IP N + + R NL+ SV S N +AY+ ++ H + + S
Sbjct: 184 IAEQLDIPTQNFVITSFARSNLKFSVLNSIKN----TNAYMLQIIRAHPNQAG---IIYS 236
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ + I+ YL I + +YH+G+ R IQ+ F N+++V+VAT AFGMG+DK
Sbjct: 237 NTRKKVEEINEYLKRYDIKLAAYHAGLSNSLREEIQDDFQFNRLQVIVATNAFGMGIDKS 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEY 546
+V VIH + ++E Y QE GRAGRDG S L D+ +R + SD DEY
Sbjct: 297 NVRFVIHANSASNIESYYQEAGRAGRDGEESEVILIYHPGDVRQYRW-FIDESDASDEY 354
>gi|257884765|ref|ZP_05664418.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,501]
gi|257820603|gb|EEV47751.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,501]
Length = 590
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 200/327 (61%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I + ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDIQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 124 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRLYHLLKKFGFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|256820777|ref|YP_003142056.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea DSM 7271]
gi|429746398|ref|ZP_19279750.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429756068|ref|ZP_19288682.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 324
str. F0483]
gi|256582360|gb|ACU93495.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea DSM 7271]
gi|429166284|gb|EKY08277.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429172170|gb|EKY13749.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 324
str. F0483]
Length = 729
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 215/378 (56%), Gaps = 17/378 (4%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
E + ++L L+ +G+++F+ Q E I V++K++T +++PTG GKSLCYQ+PA++L G
Sbjct: 2 EMTKDDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEG 61
Query: 243 LTLVVCPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFV 296
+V+ PL+ALM +D +R + + H L+SS E+ E + I G K+L+V
Sbjct: 62 TAIVISPLIALMKNQVDAMRGISSTDSIAH--VLNSSLTKNEIREVMEDISAGKTKLLYV 119
Query: 297 SPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECIL 356
+PE + ++ + F T IS V VDEAHC+SEW H+FRP Y +R + R N+ I+
Sbjct: 120 APESLIKEEYAN-FLKTVPISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNI-PIV 177
Query: 357 AMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF 416
A+TATAT D++ L + +N+ + + R NL V N + +V +
Sbjct: 178 ALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPKTKNVDADIIRFVKQ---- 233
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
S K I +S K E +++ L N IS YH+G+ AK R++ Q++F ++ VV
Sbjct: 234 -NSKKSGIIYCLSRKKVED--LAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVV 290
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
VAT+AFGMG+DK DV VIH+ +P+S+E Y QE GRAGRDG +C F +L
Sbjct: 291 VATIAFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEK 350
Query: 537 LMYSDGVDEYAINKFLCQ 554
M + E I + L Q
Sbjct: 351 FMIGKPIAEQEIGQALLQ 368
>gi|229190913|ref|ZP_04317904.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 10876]
gi|228592581|gb|EEK50409.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 10876]
Length = 705
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDIDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|384108557|ref|ZP_10009450.1| ATP-dependent DNA helicase RecQ [Treponema sp. JC4]
gi|383869944|gb|EID85550.1| ATP-dependent DNA helicase RecQ [Treponema sp. JC4]
Length = 656
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 203/328 (61%), Gaps = 9/328 (2%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY++FR Q I+ +L+KK T+ V+PTG GKS+CYQIPA+I+ G+T+VV PL+
Sbjct: 23 VLNTVFGYEAFRPSQKNIIQSILNKKDTLAVMPTGGGKSICYQIPALIMEGITIVVSPLI 82
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L IH FL+S+ +E + I I G +K++++SPE +F
Sbjct: 83 SLMQDQVAALEAWGIHSVFLNSALESKEYFKAIEDIIRGDVKIVYLSPEGLSTGRIRELF 142
Query: 311 TATSL-ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ +L +S + VDEAHCVS+W H+FRP YM + S +R ++A+TATAT +D
Sbjct: 143 SQNNLQVSCITVDEAHCVSQWGHDFRPDYMEI--STIRRYFPDAVMVALTATATDHVRQD 200
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L + + + R+N+ L V G ++ + +V S+ K +
Sbjct: 201 IIKNLMMKEPAVFISSFNRENIFLEVQPKGRGQEA-----IHQVISYIEKHKGESGIVYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ D ++ L + SV +YH+G+P + R++ QELF ++I+++VAT+AFGMG+DK
Sbjct: 256 NSRKQVDELTDILSTMNFSVGNYHAGLPDEVRAQNQELFVKDEIQIMVATIAFGMGIDKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDG 517
+V VI++ LP+S+EEY QEIGRAGRDG
Sbjct: 316 NVRYVINFDLPKSIEEYYQEIGRAGRDG 343
>gi|228921484|ref|ZP_04084807.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|423581092|ref|ZP_17557203.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD014]
gi|423636460|ref|ZP_17612113.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD156]
gi|228838257|gb|EEM83575.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|401215857|gb|EJR22572.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD014]
gi|401274811|gb|EJR80780.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD156]
Length = 705
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDIDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|315223920|ref|ZP_07865765.1| ATP-dependent helicase RecQ [Capnocytophaga ochracea F0287]
gi|314946092|gb|EFS98096.1| ATP-dependent helicase RecQ [Capnocytophaga ochracea F0287]
Length = 729
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 215/378 (56%), Gaps = 17/378 (4%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
E + ++L L+ +G+++F+ Q E I V++K++T +++PTG GKSLCYQ+PA++L G
Sbjct: 2 EMTKDDLHSALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEG 61
Query: 243 LTLVVCPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFV 296
+V+ PL+ALM +D +R + + H L+SS E+ E + I G K+L+V
Sbjct: 62 TAIVISPLIALMKNQVDAMRGISSTDSIAH--VLNSSLTKNEIREVMEDISAGKTKLLYV 119
Query: 297 SPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECIL 356
+PE + ++ + F T IS V VDEAHC+SEW H+FRP Y +R + R N+ I+
Sbjct: 120 APESLIKEEYAN-FLKTVPISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNI-PIV 177
Query: 357 AMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF 416
A+TATAT D++ L + +N+ + + R NL V N + +V +
Sbjct: 178 ALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPKTKNVDADIIRFVKQ---- 233
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
S K I +S K E +++ L N IS YH+G+ AK R++ Q++F ++ VV
Sbjct: 234 -NSKKSGIIYCLSRKKVED--LAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVV 290
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
VAT+AFGMG+DK DV VIH+ +P+S+E Y QE GRAGRDG +C F +L
Sbjct: 291 VATIAFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEK 350
Query: 537 LMYSDGVDEYAINKFLCQ 554
M + E I + L Q
Sbjct: 351 FMIGKPIAEQEIGQALLQ 368
>gi|227879149|ref|ZP_03997031.1| ATP-dependent helicase [Lactobacillus crispatus JV-V01]
gi|256843180|ref|ZP_05548668.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus 125-2-CHN]
gi|256850221|ref|ZP_05555650.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus MV-1A-US]
gi|262046387|ref|ZP_06019349.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus MV-3A-US]
gi|293381149|ref|ZP_06627160.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus 214-1]
gi|423318725|ref|ZP_17296602.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus FB049-03]
gi|227861265|gb|EEJ68902.1| ATP-dependent helicase [Lactobacillus crispatus JV-V01]
gi|256614600|gb|EEU19801.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus 125-2-CHN]
gi|256712858|gb|EEU27850.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus MV-1A-US]
gi|260573258|gb|EEX29816.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus MV-3A-US]
gi|290922289|gb|EFD99280.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus 214-1]
gi|405593373|gb|EKB66823.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus FB049-03]
Length = 589
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 148/364 (40%), Positives = 214/364 (58%), Gaps = 17/364 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N +L+ +GY +FR GQ + I +VL K++ + V+PTG GKS+CYQIPA+I PG+TLV+
Sbjct: 2 NPEEVLKDTFGYTNFRPGQKQVIDLVLKKQNVLAVMPTGGGKSMCYQIPALINPGVTLVI 61
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ +L I+ L+S+ EEV +R G IK+++++PER L D+
Sbjct: 62 SPLISLMKDQIDNLKQNGINAAALNSTTPQEEVNPILRQAYEGKIKLIYITPER-LAIDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
I LV VDEAHC+S+W H+FRP+Y +L + L++R N ILA+TATAT
Sbjct: 121 FRYQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQLLDGINSLKSRPN---ILALTATATP 177
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L IP N+I + R N+ V N+ QN Y+ E H+ K
Sbjct: 178 AVQDDICEQLNIPKENMIVTSFARPNISFKVV---NSPQNT-PLYISEYIKAHQ-DKAGI 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I + K E+ ++ YL ISV +YH G+ + +RS++QE F ++ +V+VAT AFGM
Sbjct: 233 IYTNTRKKVES--LTDYLAKKGISVGAYHGGMDSSERSQVQEAFQFDEFQVIVATNAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDG 542
G+DK +V VIH S ++E Y QE GRAGRDG S L D+ +R + SD
Sbjct: 291 GIDKSNVRFVIHASSARNMESYYQEAGRAGRDGEESEAILIYHPGDLRQYRY-FIDESDA 349
Query: 543 VDEY 546
D+Y
Sbjct: 350 DDKY 353
>gi|229070293|ref|ZP_04203543.1| ATP-dependent DNA helicase RecQ [Bacillus cereus F65185]
gi|228712857|gb|EEL64782.1| ATP-dependent DNA helicase RecQ [Bacillus cereus F65185]
Length = 705
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ +EI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTIEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDSDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|257058944|ref|YP_003136832.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8802]
gi|256589110|gb|ACU99996.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8802]
Length = 709
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 202/343 (58%), Gaps = 14/343 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L + L+ +GYDSFR GQ + I+ L + ++++PTG GKSLC+Q+PA++ PGLT+VV
Sbjct: 6 SLEQSLKYFFGYDSFRPGQAKIIQEALQNRDLLVIMPTGGGKSLCFQLPALLKPGLTVVV 65
Query: 248 CPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQ+ L I FL+SS + EEV + I G IK+L+V+PER LN F
Sbjct: 66 SPLIALMQDQVDTLLDNGIGATFLNSSLKSEEVRSREQAIIKGKIKLLYVAPERLLNDKF 125
Query: 307 LSI--FTATSL-ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
F A + +S +DEAHCVSEW H+FRP Y +L+ LR R +LA+TATAT
Sbjct: 126 TPFLDFIAEKIGVSFFAIDEAHCVSEWGHDFRPEYRQLKQ--LRQRYPQVPMLALTATAT 183
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D++ LE+ + + R NL V ER +Y +++ S+ R K
Sbjct: 184 KRVREDIIHQLELKQPGIHITSFNRPNLDYDVQF------KERRSY-NKLLSYIRQQKGS 236
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I+ + D+ R L ++ I YH+G+ + R+ Q F + ++V+VAT+AFG
Sbjct: 237 GIVYCLSRRSVDDIAFR-LQNDGIKALPYHAGMADEARALNQNRFIRDDVQVMVATIAFG 295
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
MG++K DV VIHY LP +LE Y QE GRAGRDG + C LF
Sbjct: 296 MGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAECTLFF 338
>gi|228959047|ref|ZP_04120748.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423627884|ref|ZP_17603633.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD154]
gi|228800708|gb|EEM47624.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401271181|gb|EJR77199.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD154]
Length = 705
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDIDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|145538604|ref|XP_001455002.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422790|emb|CAK87605.1| unnamed protein product [Paramecium tetraurelia]
Length = 971
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 198/698 (28%), Positives = 335/698 (47%), Gaps = 83/698 (11%)
Query: 171 ELVEEAVRAVRDEASD-ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGK 229
+L++E V+ V ++ + EN LL LV+G+ FR+GQ EAI+ +L K+S +LV TG GK
Sbjct: 279 DLIKELVQKVNEDLDNKENYLNLLELVFGFTEFREGQFEAIQSILKKESILLVQKTGHGK 338
Query: 230 SLCYQIPAMILP-GLTLVVCPLVALMIDQLRHLPPVIHG----GFLSSSQRPEEVAETIR 284
SL YQ ++ L + ++ PL++LMIDQ+ LP I G L+S Q+ + I
Sbjct: 339 SLVYQYLSLFLQDSIGIIFSPLISLMIDQVSKLPDQIKGIAYHSMLTSFQK----SRLIE 394
Query: 285 LIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRAS 344
I+ +++++ +PE F +D IS + +DEAHCVSE SH+FR +Y+ L S
Sbjct: 395 FIKGRQVQLVYCTPEIF-QSDLGYSLEYFGKISFICIDEAHCVSELSHSFRHTYVILN-S 452
Query: 345 LLRARLNVEC--ILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNR 402
+++ L + LA+TATAT T+ V+ I S +I R+N+++SVS R
Sbjct: 453 MIQNFLKNDMPPFLALTATATHLTVESVLKKFNINKS-IISINTERNNIEISVS-----R 506
Query: 403 QNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS 462
+ +A + ++ + IL + D++S YL + ++ +H G+P +++
Sbjct: 507 DRDVNASLIKLLQSQKYKNLSSILIYCRSKYMVDMVSNYLKNCNLKCLGFHGGLPEQEKM 566
Query: 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
IQ F N+I+++VAT F MG+DK D+ A+IH +LP+S+E Y+QEIGRAGRDG+ +Y
Sbjct: 567 DIQNKFIRNQIQIIVATSIFAMGIDKSDIRAIIHLNLPKSIESYIQEIGRAGRDGQTAYA 626
Query: 523 HLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKE 582
HLFL + + RS + SD D + L ++ K+ + + A D+++
Sbjct: 627 HLFLRENDFHLERSFILSDYPDFIVMKNLLEKM--KQKQEENKITYFISKFAEENLDLRK 684
Query: 583 EVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQ 642
+ + +L+ LE +++ P L F K +K + + K G
Sbjct: 685 DTIYSLMQILERCSDGCIKVYPICHEKIVLKFFKALTDEQKEKSTFLNELSKIGRMISGS 744
Query: 643 YVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLT 702
++ +N++ ++V Q NL I E ++ + I++ DF +L
Sbjct: 745 LHVNVIKASNALSMQPLEVIRQARNLFNELSIATETQEEILPFQIMK---DF---DVNLL 798
Query: 703 KWLSEVENC-KVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNIL--------DYF 753
+ +E+ K LD++ + + + N + L +N++ +YF
Sbjct: 799 EKANEILQLHKSVALDKLNLMYILSYE--------NSVPNFDLLSQNLIQTRNFYFNEYF 850
Query: 754 RGDDNC---------DVPNKIGQSSPFLRAD----------IKVFLQS---NLNAKFT-- 789
R ++ D I + PF D IK FL N N T
Sbjct: 851 RSENPVDDILRILYDDNKQNINEYLPFDELDDDKHRQIQQAIKRFLHEETVNKNNSETHK 910
Query: 790 --------PRAVARILHGIASPAY------PSTIWSKT 813
P+ ++R+ GI S Y S+IWSK+
Sbjct: 911 IMQSYLKNPKVLSRLFCGIQSIKYSYKEYKASSIWSKS 948
>gi|225377546|ref|ZP_03754767.1| hypothetical protein ROSEINA2194_03196 [Roseburia inulinivorans DSM
16841]
gi|225210623|gb|EEG92977.1| hypothetical protein ROSEINA2194_03196 [Roseburia inulinivorans DSM
16841]
Length = 634
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L++++GYDSFR GQ I +L + V+PTGAGKS+CYQIPA++LPG+TLVV PL++
Sbjct: 31 LKILFGYDSFRAGQKSVIDSILAGRDAFAVMPTGAGKSVCYQIPAVLLPGITLVVSPLIS 90
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ++ L + F++SS ++ ETIR + G K+++++PER FL++
Sbjct: 91 LMQDQVKALNEAGVPAAFINSSLSEKDYNETIRRARQGIYKIIYIAPERLATESFLTLAK 150
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ IS+V VDEAHC+S+W +FRPSYM++ ++ I A TATAT T D++
Sbjct: 151 SVP-ISMVTVDEAHCISQWGQDFRPSYMKI-VEFVKTLEKRPIISAFTATATETVREDIV 208
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L + + R+NL V N Q Y+ + S H S I + K
Sbjct: 209 CTLGLQNPFTLVNGFDRENLFFQVDKPKNKEQ-----YILKYISEH-SGDSGIIYCATRK 262
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+ D I L ISV YH+G+ A +R ++Q+ F + +VVAT AFGMG+DK +V
Sbjct: 263 N--VDNIYELLKSKGISVGKYHAGMSAVERKKMQDDFVFDYTSIVVATNAFGMGIDKSNV 320
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
VIHY++P+S+E Y QE GRAGRDG + C L
Sbjct: 321 RFVIHYNMPQSMENYYQEAGRAGRDGLDAKCILLF 355
>gi|218232745|ref|YP_002367534.1| ATP-dependent DNA helicase RecQ [Bacillus cereus B4264]
gi|218160702|gb|ACK60694.1| ATP-dependent DNA helicase RecQ [Bacillus cereus B4264]
Length = 705
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDIDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|359787021|ref|ZP_09290092.1| ATP-dependent DNA helicase RecQ [Halomonas sp. GFAJ-1]
gi|359295671|gb|EHK59934.1| ATP-dependent DNA helicase RecQ [Halomonas sp. GFAJ-1]
Length = 672
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 152/410 (37%), Positives = 222/410 (54%), Gaps = 16/410 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+D FR GQ + VL+ ST + TGAGKSLCYQ+PA+ LP LTLVV PL+A
Sbjct: 10 LKGVFGFDGFRGGQQAVVSRVLEGHSTAAIFATGAGKSLCYQLPALHLPHLTLVVSPLLA 69
Query: 253 LMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
LM DQL L HG + S+Q + + + + G +K+L +S ER N F
Sbjct: 70 LMQDQLVFL--TRHGVAAASIDSTQDRDTTRDVMERAKSGELKILMISVERLKNERFRH- 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F ISL+VVDEAHC+SEW HNFRP Y++L + + +L +TATAT T + D
Sbjct: 127 FLRQVQISLLVVDEAHCLSEWGHNFRPDYLKL--PDYQRDFAIPQVLLLTATATPTVIAD 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVF--SFHRSSKHYYILQ 427
+ I N+I R NL+L V+ + +RQ + ++ F + Y LQ
Sbjct: 185 MGEKFAIAPDNVITTGFYRPNLELLVAPAMEDRQQKLINWLKPQMQPGFEAPTIIYVTLQ 244
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + +++ L I+ ++YH+G+ + R IQ F + +VAT+AFGMG+D
Sbjct: 245 QTAEQ-----VAKALAAQGIAAQAYHAGLDSGRRDEIQRQFMGGESPCIVATIAFGMGID 299
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K D+ V+HY LP+S+E Y QEIGRAGRDG+ S C L + +Y D +
Sbjct: 300 KGDIRNVVHYDLPKSIENYSQEIGRAGRDGQPSTCLTMAGRDGLRVLENFVYGDTPEYAG 359
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
I + L ++ G S + L+ + SR +I+ + TLL LE+ I
Sbjct: 360 IYRLLEEIAAAGSASDQQWEVLLT-TLSRDTNIRLLPLKTLLVRLEMHGI 408
>gi|423642180|ref|ZP_17617798.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD166]
gi|401277123|gb|EJR83067.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD166]
Length = 705
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDIDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|229110265|ref|ZP_04239839.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock1-15]
gi|423586762|ref|ZP_17562849.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD045]
gi|423648707|ref|ZP_17624277.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD169]
gi|228673251|gb|EEL28521.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock1-15]
gi|401230280|gb|EJR36788.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD045]
gi|401284205|gb|EJR90071.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD169]
Length = 705
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINKENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDIDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSTCILL 332
>gi|336452159|ref|ZP_08622591.1| ATP-dependent DNA helicase RecQ [Idiomarina sp. A28L]
gi|336280975|gb|EGN74260.1| ATP-dependent DNA helicase RecQ [Idiomarina sp. A28L]
Length = 623
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 194/328 (59%), Gaps = 12/328 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
RLLR V+GYD FR GQ E I VL + T+ +LPTGAGKS+CYQ+PAM+LPG+T+VV PL
Sbjct: 32 RLLRDVFGYDKFRFGQEEIISNVLQGRDTLALLPTGAGKSMCYQLPAMLLPGVTIVVSPL 91
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
V+LM DQ+ + + I G + S EV +T R + G +KVL+++PER L F
Sbjct: 92 VSLMDDQVAAMRELGIAAGAIHSGLNAPEVMDTFRKLHSGELKVLYLAPERLLQRSFQER 151
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+SL+ VDEAHC+S+W H+FRP Y +L +R +L +LA+TATA T +D
Sbjct: 152 LQEVQ-VSLIAVDEAHCISQWGHDFRPEYGQL--GEVREQLPGAPVLALTATADAVTRQD 208
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L + S L+Q + R N++ V E+ +V + + + +
Sbjct: 209 IIERLHLDDSALVQGSFDRPNIRYLV--------QEKYKPRTQVLKYVKRQRGASGIIYC 260
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G T+ ++ L I +Y++G+P R+ + F + I V+VATVAFGMG++K
Sbjct: 261 GSRKRTEELAEMLMREGIRAAAYNAGLPHDQRAAALQGFIRDDIDVIVATVAFGMGINKP 320
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDG 517
+V V+HY LP S+E Y QE GRAGRDG
Sbjct: 321 NVRFVMHYDLPRSVEAYYQETGRAGRDG 348
>gi|310778922|ref|YP_003967255.1| ATP-dependent DNA helicase, RecQ-like protein [Ilyobacter
polytropus DSM 2926]
gi|309748245|gb|ADO82907.1| ATP-dependent DNA helicase, RecQ-like protein [Ilyobacter
polytropus DSM 2926]
Length = 640
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/341 (39%), Positives = 202/341 (59%), Gaps = 15/341 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L+ YGYDSFR GQ + +K VL K+ + V+PTG GKS+CYQIP ++ G+TLVV PL
Sbjct: 7 RILKNTYGYDSFRYGQEKVVKGVLMKRDILAVMPTGGGKSICYQIPGLMFKGITLVVSPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I F++SS EE +T+R I+VG K+L+++PER L+ F+++
Sbjct: 67 ISLMKDQVDTLNNLGISAAFVNSSLSKEEFIKTMRNIRVGRTKILYLAPERLLSPKFINL 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ IS + VDEAHC+S+W H+FR SY+ + + N++ + A TATAT D
Sbjct: 127 MKSVD-ISFIAVDEAHCISQWGHDFRKSYLEIPKFIEALERNIQ-VAAFTATATPKVRED 184
Query: 370 VMSALEI--PLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
++ L + PL+ + R NL V + + Y+ + R+ + I+
Sbjct: 185 IVDKLNLKNPLAYV--DGFDRGNLSFYVE-----KGEDPEKYI--IDYLERNRRKPGIIY 235
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + E D + YL S SV YH+G+ +R QE F ++IRV++AT AFGMG+D
Sbjct: 236 ASTRK-EVDHLYSYLRIKSFSVGKYHAGLSESERKDFQEKFLKDEIRVMIATNAFGMGID 294
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIH ++P LE Y QE GRAGRDG C L ++
Sbjct: 295 KSNVRFVIHRNIPRDLESYYQEAGRAGRDGAPGECILLYNE 335
>gi|385809856|ref|YP_005846252.1| ATP-dependent DNA helicase RecQ [Ignavibacterium album JCM 16511]
gi|383801904|gb|AFH48984.1| ATP-dependent DNA helicase RecQ [Ignavibacterium album JCM 16511]
Length = 782
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 205/339 (60%), Gaps = 13/339 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GYDSFR Q E I +L ++ + VLPTGAGKS+CYQIPA+I ++V+ PL
Sbjct: 6 QILKEFFGYDSFRPAQEEVISEILKGENVIAVLPTGAGKSVCYQIPALISDNYSIVISPL 65
Query: 251 VALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
+ALM DQ+ L + F++S+ E+ + + I G IK+L+++PER + +F
Sbjct: 66 IALMKDQVDSLNRKKVVAAFINSTLEWVEIEKILNDISFGKIKLLYIAPERLESKEFSER 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
A SL + DEAHC+SEW HNFRPSY +++ + +++ + A TATAT + D
Sbjct: 126 LKAMRPSSLFI-DEAHCISEWGHNFRPSYTKIKDFI--QFTDIKKVSAFTATATPEVVND 182
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L+I + +I K R+N+ +SV + ++ ++ ++++H I+ +S
Sbjct: 183 IIKQLDIKKAKVIVKGFERENISISVYQTSKKKE--------KLLEIIKTNQHPAIIYVS 234
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ + + I+ +L N + YH+G+ R IQE F + K+ +++AT AFGMG+DK+
Sbjct: 235 SRK-KAESINEFLNLNKTKSEFYHAGLNNILRRNIQEEFIAGKVPIIIATNAFGMGIDKK 293
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
D+ VIHY +P S+E Y QEIGRAGRDG+ S L D+
Sbjct: 294 DIRTVIHYDIPGSIENYYQEIGRAGRDGKPSSAILLFDE 332
>gi|452976451|gb|EME76266.1| ATP-dependent DNA helicase YocI [Bacillus sonorensis L12]
Length = 592
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/361 (38%), Positives = 205/361 (56%), Gaps = 16/361 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GY S R GQ EAI+ VL+ + T ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLQRYFGYPSLRPGQREAIQSVLEGRDTACIMPTGGGKSICYQIPALMFEGTTLVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I +++SS + E + ++ G K+ +V+PER + DF+ +
Sbjct: 68 SLMKDQVDALNQLGIEASYVNSSLDSRMIEERMSILSEGGYKLFYVTPERLASPDFIRVI 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ I L +DEAHC+S+W H+FRPSY + S A + +LA+TATAT D+
Sbjct: 128 SHLH-IPLAAIDEAHCISQWGHDFRPSYRHIE-SFFGALGSRPVVLALTATATPEVHEDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I RDNL + + G NR AY+++ +RS + +
Sbjct: 186 CAQLGIQKENTIFTGFSRDNLTFKI-VKGENRDRFIEAYIEK----NRSEAG---IIYTA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E + IS L IS YH G+ +R R Q+LF ++ I V+VAT AFGMG++K +
Sbjct: 238 TRREAERISEKLSQKGISAGCYHGGMNDDERDRQQDLFLNDSISVMVATSAFGMGINKTN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAI 548
+ VIHY +P+++E Y QE GRAGRDG S C L DI RL+ + ++ AI
Sbjct: 298 IRYVIHYQIPKNMESYYQEAGRAGRDGLDSECILLFSPQDI---RLQRFLIEQSTEDEAI 354
Query: 549 N 549
Sbjct: 355 Q 355
>gi|229085593|ref|ZP_04217828.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-44]
gi|228697741|gb|EEL50491.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-44]
Length = 705
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 MDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
ALEI N I R+NL SV + G +R + Y+ R +K + +
Sbjct: 186 CRALEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI-------RQNKKESGIIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
D + L + +SV YH+G+ DR+ QE F +++ V+VAT AFGMG+DK +
Sbjct: 238 TRKVVDQLYEDLYKSGVSVARYHAGMNDHDRNEQQERFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|332305068|ref|YP_004432919.1| RecQ familyATP-dependent DNA helicase [Glaciecola sp. 4H-3-7+YE-5]
gi|332172397|gb|AEE21651.1| ATP-dependent DNA helicase, RecQ family [Glaciecola sp.
4H-3-7+YE-5]
Length = 673
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 183/568 (32%), Positives = 277/568 (48%), Gaps = 62/568 (10%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMI 255
++G++ FR GQ + + +L S++ + PTG+GKSLCYQ A+ LP LTLVV PL+ALM
Sbjct: 22 IFGFNQFRTGQQQVVSQLLSGHSSLAIFPTGSGKSLCYQFCAVHLPHLTLVVSPLLALMK 81
Query: 256 DQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS 314
DQL L I G + S+ P+E T+ ++ G IK+L VS ERF N F + S
Sbjct: 82 DQLAFLQTKGIPAGSIDSTLSPDEQRNTMERVKSGEIKILMVSVERFKNERFRQFIDSVS 141
Query: 315 LISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374
+S++V+DEAHC+SEW HNFRP Y++L +A+LN+ +L +TATAT D+
Sbjct: 142 -VSMLVIDEAHCISEWGHNFRPDYLKLPD--YKAQLNIPLVLLLTATATKKVKLDMAKRF 198
Query: 375 EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
I +++Q R+NL L+V + Q + S + + Y LQ + +
Sbjct: 199 AIAPEHIVQTGFYRENLDLNVIPT--QEQQKASTLLQLIEQQQGCGIVYVTLQHTAEQ-- 254
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
++ L + K+YH+G+ + R ++Q+ F +VVVAT+AFGMG+DK D+ V
Sbjct: 255 ---VAVGLAAAGVLAKAYHAGLGDEVRQQVQQDFMLGHTQVVVATIAFGMGIDKSDIRFV 311
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVDEYAINKFL 552
+HY LP+S+E Y QEIGRAGRDG+ S C LD + + + +Y D + I L
Sbjct: 312 VHYDLPKSIENYSQEIGRAGRDGQPSRCITLGNLDGLN--TVENFVYGDTPELQGIQIVL 369
Query: 553 CQVFTNGMNSHGKLCSLVKESASRKFDIKEEVML---------------TLLTCLELGEI 597
+ G+ S L K +A FD + EV + TLL LEL I
Sbjct: 370 DDI-RQGIQSRNTQ-PLSKTAADISFDGQWEVQIHGLSTQSNIRQLPLKTLLVQLELMGI 427
Query: 598 QYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQY---VFD-------- 646
+ P+ + F L DK A +L + + K+ + VFD
Sbjct: 428 ----VRPQYTYFADVRF-----KFLQDK----ADVLGRFDEKRQAFLNSVFDHTDFKKVW 474
Query: 647 ----IPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLT 702
T+ GA V L L+ I + K Y + D L+ L
Sbjct: 475 GSLNFDTLFEQTGAERSRVVAALEYLEQHQLIELQTKQMTEVYQVNSTAIDQSDLAETLH 534
Query: 703 KWLSEVENCKVRKLDRMFHAAVFAVDVC 730
+ SE E +++++ + F +D C
Sbjct: 535 GYFSEKEQKELQRIAMLVR--FFQLDKC 560
>gi|420143909|ref|ZP_14651397.1| ATP-dependent DNA helicase RecQ [Lactococcus garvieae IPLA 31405]
gi|391855361|gb|EIT65910.1| ATP-dependent DNA helicase RecQ [Lactococcus garvieae IPLA 31405]
Length = 592
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 213/358 (59%), Gaps = 16/358 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ ++GY+SFR GQ + I+ VL K T+ +LPTGAGKS+CYQ+PA++ G+TLVV
Sbjct: 2 NLEAKLKEIFGYESFRQGQKQIIEQVLQGKDTLGILPTGAGKSICYQLPALLQEGVTLVV 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I F++S+ +E ++ I+ G +K+LFV+PERF F
Sbjct: 62 SPLISLMKDQVDQLNIANIPATFINSTVDEQEAYFRMQQIENGEVKILFVAPERFELESF 121
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ F I LV +DEAHC+S+W H+FRPSY+ A L ILA+TATAT
Sbjct: 122 -NYFLQHLPIDLVAIDEAHCISQWGHDFRPSYVTF-AKRLADLPTSPTILALTATATPRV 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D+ L+I N ++ LR+NL+ V + G ++++ +Y+ E + + I
Sbjct: 180 SADIQDLLQISEDNTVKTGFLRENLRFEV-VKGKDKRDFLKSYLKE-----HTDESGIIY 233
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+ K E + ++ +L N+ K YH+G+ +R + QE F +++ ++VAT AFGMG+
Sbjct: 234 ANTRK--EVEEVTEWLNRNNFPAKRYHAGLAEGERQKNQEDFLYDEVPIMVATNAFGMGI 291
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDG 542
+K +V VIHY +P ++E Y QE GRAGRDG S L +D+ RLR+ + G
Sbjct: 292 NKSNVRFVIHYGMPATIEAYYQEAGRAGRDGLDSDAILLFSPNDV---RLRNFLIEQG 346
>gi|381184714|ref|ZP_09893248.1| ATP-dependent DNA helicase RecQ [Listeriaceae bacterium TTU M1-001]
gi|380315416|gb|EIA18978.1| ATP-dependent DNA helicase RecQ [Listeriaceae bacterium TTU M1-001]
Length = 594
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/400 (37%), Positives = 221/400 (55%), Gaps = 34/400 (8%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GY SFR GQ E I +L+ + T+ ++PTG GKSLCYQIPA+I GLT+VV PL
Sbjct: 7 QILQKSFGYTSFRTGQKEVISQLLNGQDTLAIMPTGGGKSLCYQIPALIFKGLTIVVSPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I F++S+ EV E + L + G +K+L+++PER F ++
Sbjct: 67 ISLMKDQVDALHAAGIQATFINSTLSIREVNERLNLARTGNLKLLYIAPERLDTPQFQTL 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
ISL +DEAHC+S+W H+FRPSY++L + L I+A+TATAT +D
Sbjct: 127 LDEME-ISLFAIDEAHCISQWGHDFRPSYLKL-CTYLNEMKRRPLIVALTATATPDVSKD 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L+I N++Q RDNL V + G ++ Y+++ SS+ + +
Sbjct: 185 ICHLLDIQNENVVQTGFSRDNLAFQV-VKGQDKDKFLLDYLEK-----NSSESGIVYAAT 238
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K E + I+ +L I+ YH G+ +R Q F ++ RV+VAT AFGMG++K
Sbjct: 239 RK--EVERIAEFLNKKGIASLKYHGGMNDLERDETQTAFLFDEKRVIVATNAFGMGINKS 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL-----------FLDDIT-------- 530
+V V+HY++P ++E Y QE GRAGRDG S C L FL D +
Sbjct: 297 NVRFVVHYNIPRNMEAYYQEAGRAGRDGVPSDCVLLFSPQDTHIQQFLIDQSELPAERKE 356
Query: 531 --YFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCS 568
Y +LR M G E + K++ Q F + GK CS
Sbjct: 357 NEYRKLRQ-MSGYGYTEICLQKYIVQYFGEDEENCGK-CS 394
>gi|311032873|ref|ZP_07710963.1| ATP-dependent DNA helicase RecQ [Bacillus sp. m3-13]
Length = 715
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 205/337 (60%), Gaps = 11/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GY+ FR GQ + I +L++ +T+ V+PTG GKS+CYQ+PA++ GLT+V+ PL+
Sbjct: 8 ILKEYFGYEDFRPGQKKIIGSILNESNTLGVMPTGGGKSICYQVPALLASGLTIVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + +++SS E+ E ++ ++ G IK+L+++PER + +F SI
Sbjct: 68 SLMKDQVDSLLNAGVQATYINSSLNAGEIRERVQQVEHGEIKLLYLAPERLESYEFQSIL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+A +S+V +DEAHC+S+W H+FRPSY + + + R N I A TATAT + D+
Sbjct: 128 SAIE-VSIVAIDEAHCMSQWGHDFRPSYREVGSFIKRIPGN-PIITAFTATATEQVIEDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L I + RDNL SV L G N+ N Y+++ F +++K + +
Sbjct: 186 QLMLGITPEHTYVTGFSRDNLTFSV-LRGQNKDN----YLEK---FLKANKEESGIIYAT 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L + YH+G+ ++R QE F ++++++VAT AFGMG+DK +
Sbjct: 238 TRKEVDQIFSSLTKKGYKIGKYHAGLSEEERKEYQEDFLHDRLKLMVATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
V VIHY++P+++E Y QE GRAGRDG S C L +
Sbjct: 298 VRFVIHYNMPKNVESYYQEAGRAGRDGEESECILLFN 334
>gi|423407543|ref|ZP_17384692.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-3]
gi|401658869|gb|EJS76358.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-3]
Length = 705
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLLQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPKKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-VKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V++AT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGRAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|385837588|ref|YP_005875218.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. cremoris
A76]
gi|358748816|gb|AEU39795.1| ATP-dependent DNA helicase RecQ [Lactococcus lactis subsp. cremoris
A76]
Length = 593
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/358 (39%), Positives = 215/358 (60%), Gaps = 15/358 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ ++GYD FR+GQ + I+ VL ++T+ +LPTGAGKS+CYQ+PA+I GLTLV+
Sbjct: 2 NLEIKLKEIFGYDYFRNGQKQIIEQVLAGQATLGILPTGAGKSICYQLPAVIQSGLTLVI 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I F++S+ E + +R ++ G IK+LFV+PERF + D+
Sbjct: 62 SPLISLMKDQVDQLNIAGIPATFINSTLEEGESYQRMRQVENGEIKLLFVAPERF-SLDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
+ F I LV +DEAHC+S+W H+FRPSY+ A L L R V LA+TATAT
Sbjct: 121 FNNFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFAAHLKDLPTRPTV---LALTATATP 177
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ S L I S+ I+ LR+NL+ V + G +++ Y+ ++ S+
Sbjct: 178 KVADDIQSLLSISPSHTIKTGFLRENLRFEV-VKGMDKRTFLKNYLK-----NQESESAG 231
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ S + E + I +L N YH+G+ ++R QELF +++ ++VAT AFGM
Sbjct: 232 IIYASTRK-EVEEICEWLNHNHFKAVRYHAGLSERERQMNQELFLFDEVPIMVATNAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
G++K +V VIHY++ ++E Y QE GRAGRDG L + L R+R+ + G
Sbjct: 291 GINKPNVRFVIHYAITATIESYYQEAGRAGRDG-LESDAILLFSPNDLRIRNFLIEQG 347
>gi|260775110|ref|ZP_05884009.1| ATP-dependent DNA helicase RecQ [Vibrio coralliilyticus ATCC
BAA-450]
gi|260609027|gb|EEX35187.1| ATP-dependent DNA helicase RecQ [Vibrio coralliilyticus ATCC
BAA-450]
Length = 611
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 211/347 (60%), Gaps = 18/347 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY SFRDGQ E I+ ++ + +++++PTG GKSLCYQ+PA++ GLTLV+ PL+
Sbjct: 19 ILEDVFGYQSFRDGQQEVIEAAVNGQDSLVIMPTGGGKSLCYQVPALVRGGLTLVISPLI 78
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++SS +E+ +Q G +K+++VSPER L DF+
Sbjct: 79 SLMKDQVDQLKANGVSAECVNSSMPRDELISVYNRMQSGQLKLVYVSPERVLMRDFIERL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECI--LAMTATATTTTLR 368
+ SL S++ VDEAHC+S+W H+FRP Y ASL + + + + +A+TATA T
Sbjct: 139 ESLSL-SMIAVDEAHCISQWGHDFRPEY----ASLGQIKQHFPHVPFMALTATADDATRN 193
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+M L++ ++ + R N++ ++ E+ + +V F + K +
Sbjct: 194 DIMHRLQLNEPHIHLSSFDRPNIRYTLV--------EKHKPISQVIRFLDTQKGNCGIIY 245
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
G + ++++ LC+N I SYH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 246 CGSRKKVEMVTEKLCNNHIRAASYHAGLEADERAYVQEAFQRDDIQIVVATVAFGMGINK 305
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 306 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|119773474|ref|YP_926214.1| ATP-dependent DNA helicase RecQ [Shewanella amazonensis SB2B]
gi|119765974|gb|ABL98544.1| ATP-dependent DNA helicase RecQ [Shewanella amazonensis SB2B]
Length = 607
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/358 (38%), Positives = 204/358 (56%), Gaps = 15/358 (4%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
E + + L L+ V+GY FR GQ E + V + ++++PTG GKSLCYQ+PA++LPG
Sbjct: 7 EHTQDPLSHCLQQVFGYRDFRPGQREVMTRVCQGEDCLVIMPTGGGKSLCYQVPALVLPG 66
Query: 243 LTLVVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
+TLVV PL++LM DQ+ L + +L+SSQ E+ E +R ++ G +K+L+VSPER
Sbjct: 67 VTLVVSPLISLMKDQVDSLIQSGVAAAYLNSSQPREQAIEVLRQLRFGELKLLYVSPERL 126
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L DFLS ISL VDEAHC+SEW H+FRP Y L L+ R ++A+TAT
Sbjct: 127 LQGDFLSRLDELH-ISLFAVDEAHCISEWGHDFRPEYAAL--GQLKQRFPHVPVMALTAT 183
Query: 362 ATTTTLRDVMSALEI-PLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS 420
A T + L I P +L R N++ +V+ E+ +++ F +S
Sbjct: 184 ADEATRSSICERLGIQPFQHLASFD--RPNIRYTVA--------EKLNAANQLRQFIQSQ 233
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480
K + D ++ L + YH+G+ +R+ +Q+ F ++I VVVATV
Sbjct: 234 KGANGIVYCSSRRRVDEVAERLRQQGFYAEGYHAGMTQDERASVQDRFLKDQIDVVVATV 293
Query: 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
AFGMG++K +V V+HY +P+S+E Y QE GRAGRDG + L D R+R L+
Sbjct: 294 AFGMGINKSNVRFVVHYDIPKSIESYYQETGRAGRDGLDAEALLLFDPADIGRVRHLI 351
>gi|251798446|ref|YP_003013177.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. JDR-2]
gi|247546072|gb|ACT03091.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. JDR-2]
Length = 721
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 204/355 (57%), Gaps = 11/355 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ VYGYD+FR GQ I+ +L+ + T+ +LPTG GKS+CYQIP++++PG ++V+ PL++
Sbjct: 9 LKKVYGYDTFRPGQEGIIEGILEGRDTLAILPTGGGKSICYQIPSLLMPGTSIVISPLIS 68
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + + FL+SS EE +R G K+L+V+PER L+A + +
Sbjct: 69 LMKDQVDALNRLGVPAAFLNSSLGAEEYRTILRNALRGEYKMLYVAPER-LDAPMFTTLS 127
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
I ++ +DEAHCVS+W H+FRPSY +L A + N + A TATAT D+
Sbjct: 128 EQLHIPMIAIDEAHCVSQWGHDFRPSYRQL-AGWIGKMPNRPLVAAFTATATQEVAADIT 186
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+ L + N+ R NL LSV +SG +++N ++ E R + I + K
Sbjct: 187 AMLGLREPNVFVTGFARPNLSLSV-VSGGDKKNFLQQFLRE-----REDQSGIIYTATRK 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E + + L I+ YH G+ K+R+ QE F +++R++VAT AFGMG+DK +V
Sbjct: 241 --EAEQVQELLVRKGIAAGKYHGGLSDKERAETQERFRFDELRIMVATNAFGMGIDKPNV 298
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
VIH+ +P +E Y QE GRAGRDG S C L + R L+ DEY
Sbjct: 299 RYVIHWQMPGDIESYYQEAGRAGRDGEESECVLLFEPQDVQVQRFLIEQGMGDEY 353
>gi|423396692|ref|ZP_17373893.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-1]
gi|401651268|gb|EJS68833.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-1]
Length = 705
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLEINQENTIMTTFERENLSFSV-VKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V++AT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGRAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|229161685|ref|ZP_04289665.1| ATP-dependent DNA helicase RecQ [Bacillus cereus R309803]
gi|228621930|gb|EEK78776.1| ATP-dependent DNA helicase RecQ [Bacillus cereus R309803]
Length = 705
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLATYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|229060489|ref|ZP_04197852.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH603]
gi|228718872|gb|EEL70493.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH603]
Length = 705
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|229012075|ref|ZP_04169254.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides DSM 2048]
gi|229133703|ref|ZP_04262529.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST196]
gi|229167360|ref|ZP_04295098.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH621]
gi|423487941|ref|ZP_17464623.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BtB2-4]
gi|423493663|ref|ZP_17470307.1| ATP-dependent DNA helicase RecQ [Bacillus cereus CER057]
gi|423499545|ref|ZP_17476162.1| ATP-dependent DNA helicase RecQ [Bacillus cereus CER074]
gi|423599875|ref|ZP_17575875.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD078]
gi|228615922|gb|EEK73009.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH621]
gi|228649738|gb|EEL05747.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST196]
gi|228749163|gb|EEL99009.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides DSM 2048]
gi|401153334|gb|EJQ60761.1| ATP-dependent DNA helicase RecQ [Bacillus cereus CER057]
gi|401156803|gb|EJQ64205.1| ATP-dependent DNA helicase RecQ [Bacillus cereus CER074]
gi|401234562|gb|EJR41040.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD078]
gi|402436006|gb|EJV68039.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BtB2-4]
Length = 705
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|423510797|ref|ZP_17487328.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA2-1]
gi|402453750|gb|EJV85550.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA2-1]
Length = 705
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|59710677|ref|YP_203453.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri ES114]
gi|59478778|gb|AAW84565.1| ATP-dependent DNA helicase [Vibrio fischeri ES114]
Length = 611
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 203/345 (58%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY FR GQ E I VLD K ++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 19 VLKDVFGYQEFRVGQEEVINAVLDSKDCLVIMPTGGGKSLCYQIPALVFEGLTLVISPLI 78
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + L+S+ EE + G +K+L+VSPER + DF+
Sbjct: 79 SLMKDQVDQLKANGVKAECLNSTIEREEQIAIWNRVNSGQVKMLYVSPERVMMRDFMDRL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ +L ++ VDEAHC+S+W H+FRP Y L ++ R I+A+TATA T +D+
Sbjct: 139 ESLNL-CMIAVDEAHCISQWGHDFRPEYASL--GQIKQRFPSVPIMALTATADEATRKDI 195
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L +P + + R N++ +V E+ V ++ + + K+ + G
Sbjct: 196 LHRLSLPEPHQYLGSFDRPNIRYTVL--------EKHKPVSQIVRYLATQKNQCGVIYCG 247
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N I SYH+G+ +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 248 SRKKVEMLTEKLCNNHIRAASYHAGLDLDERNYVQEAFQRDDIQIVVATVAFGMGINKSN 307
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V V H+ +P+++E Y QE GRAGRDG + + D DI + R
Sbjct: 308 VRFVAHFDIPKNIESYYQETGRAGRDGLPAEAVMLYDPADIVWLR 352
>gi|423517540|ref|ZP_17494021.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA2-4]
gi|401163812|gb|EJQ71157.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuA2-4]
Length = 705
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|423668466|ref|ZP_17643495.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM034]
gi|423675407|ref|ZP_17650346.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM062]
gi|401301670|gb|EJS07257.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM034]
gi|401308431|gb|EJS13826.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VDM062]
Length = 705
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|229030497|ref|ZP_04186534.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1271]
gi|228730807|gb|EEL81750.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH1271]
Length = 705
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRHAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDTDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|54310561|ref|YP_131581.1| ATP-dependent DNA helicase RecQ [Photobacterium profundum SS9]
gi|46915004|emb|CAG21779.1| putative ATP-dependent DNA helicase RecQ [Photobacterium profundum
SS9]
Length = 615
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 210/351 (59%), Gaps = 24/351 (6%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ V+GY SFR GQ E I+ V++ + ++++PTG GKSLCYQIPA+I+PG+TLV+ PL
Sbjct: 19 KILQDVFGYQSFRIGQQEVIEAVVEGQDCLVIMPTGGGKSLCYQIPALIMPGITLVISPL 78
Query: 251 VALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + +++S+ EEV ET ++ G +K+++VSPER L DF+
Sbjct: 79 ISLMKDQVDQLNANGVAAAYINSTMSREEVMETFLAMREGDLKLVYVSPERVLMRDFIER 138
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
T L S+V VDEAHCVS+W H+FRP Y L L+ I+A+TATA TT D
Sbjct: 139 LYETPL-SMVAVDEAHCVSQWGHDFRPEYAAL--GTLKQHFENLPIMALTATADDTTRND 195
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV-----FSFHRSSKHYY 424
+ S L + + + R N++ ++ L + + + Y+ V + S K
Sbjct: 196 ITSRLGLTNPHDYLGSFDRPNIRYTL-LEKHKPMTQLTRYLTGVRGQCGIVYCNSRKR-- 252
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ QI+GK L D+ + +YH+G+ +R R+QE F + I +VVATVAFGM
Sbjct: 253 VEQIAGK----------LRDSGVRAAAYHAGLDHDERGRVQESFQRDDIHIVVATVAFGM 302
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
G++K +V V+HY +P ++E Y QE GRAGRDG + +F D D+ + R
Sbjct: 303 GINKPNVRFVVHYDIPRNIESYYQETGRAGRDGLPAEAVMFYDPSDLAWLR 353
>gi|163940564|ref|YP_001645448.1| ATP-dependent DNA helicase RecQ [Bacillus weihenstephanensis KBAB4]
gi|163862761|gb|ABY43820.1| ATP-dependent DNA helicase RecQ [Bacillus weihenstephanensis KBAB4]
Length = 705
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF ++I V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLGKAGVSVSKYHAGMSDHDRNEQQELFLRDEISVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|257458284|ref|ZP_05623433.1| ATP-dependent DNA helicase RecQ [Treponema vincentii ATCC 35580]
gi|257444311|gb|EEV19405.1| ATP-dependent DNA helicase RecQ [Treponema vincentii ATCC 35580]
Length = 650
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 216/367 (58%), Gaps = 16/367 (4%)
Query: 183 EASDENLGR---LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239
E +DE L R +L+ +GY+ FR Q E I VL + T+ V+PTG GKSLCYQIPA++
Sbjct: 13 EKNDELLMRAHAVLKTRFGYNEFRPMQKEVIASVLSGRDTLAVMPTGGGKSLCYQIPALL 72
Query: 240 LPGLTLVVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298
G+TLVV PL++LM DQ+ L + FL+SS +E + ++ I+ G++K++++SP
Sbjct: 73 FSGITLVVSPLISLMQDQVASLVENGVSALFLNSSLEWDEYLDAVQRIKSGSVKLVYLSP 132
Query: 299 ERFLNADFLSIFTATSL-ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILA 357
E SI S+ +S + +DEAHC+SEW H+FRP Y+ + S +RA+ + LA
Sbjct: 133 EALAAERTQSILHDASVPVSCITIDEAHCISEWGHDFRPGYLEI--SNVRAQFSGAVCLA 190
Query: 358 MTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH 417
+TATAT D+ L + + R N+ L V + +R+A + +
Sbjct: 191 LTATATAQVRADITVNLRMQAPEVFIAGFNRPNIFLEV-------RPKRNALREVIACIE 243
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
+ S I+ ++ + D ++ L D+ SV +YH+G+ ++R Q+ F +KIR++V
Sbjct: 244 KHSGESGIIYCFSRN-QVDTLTEKLKDSGYSVLNYHAGLSDEERKDHQQQFIRDKIRIMV 302
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
ATVAFGMG+DK +V VIHY LP+SLEEY QEIGRAGRDG S+ L ++RS
Sbjct: 303 ATVAFGMGIDKPNVRFVIHYDLPKSLEEYYQEIGRAGRDGLASHALLLYSAGDARKIRSF 362
Query: 538 MYSDGVD 544
+SD D
Sbjct: 363 -FSDAAD 368
>gi|402556977|ref|YP_006598248.1| ATP-dependent DNA helicase RecQ [Bacillus cereus FRI-35]
gi|401798187|gb|AFQ12046.1| ATP-dependent DNA helicase RecQ [Bacillus cereus FRI-35]
Length = 705
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISSTEANQRIQLAKQGHYKLLYVAPERLDSIEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|52142697|ref|YP_084132.1| ATP-dependent DNA helicase Q [Bacillus cereus E33L]
gi|51976166|gb|AAU17716.1| ATP-dependent DNA helicase Q [Bacillus cereus E33L]
Length = 705
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L + +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKSGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|420149707|ref|ZP_14656877.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394753188|gb|EJF36768.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 732
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/376 (36%), Positives = 214/376 (56%), Gaps = 17/376 (4%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
+ ++L L+ +G+++F+ Q E I V++K++T +++PTG GKSLCYQ+PA++L G
Sbjct: 7 TKDDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTA 66
Query: 245 LVVCPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298
+V+ PL+ALM +D +R + + H L+SS E+ E + I G K+L+V+P
Sbjct: 67 IVISPLIALMKNQVDAMRGISSTDSIAH--VLNSSLTKNEIREVMEDISAGKTKLLYVAP 124
Query: 299 ERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAM 358
E + ++ + F T IS V VDEAHC+SEW H+FRP Y +R + R N+ I+A+
Sbjct: 125 ESLIKEEYAN-FLKTVPISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNI-PIVAL 182
Query: 359 TATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR 418
TATAT D++ L + +N+ + + R NL V N + +V +
Sbjct: 183 TATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPKTKNVDADIIRFVKQ-----N 237
Query: 419 SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
S K I +S K E +++ L N IS YH+G+ AK R++ Q++F ++ VVVA
Sbjct: 238 SKKSGIIYCLSRKKVED--LAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVA 295
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
T+AFGMG+DK DV VIH+ +P+S+E Y QE GRAGRDG +C F +L M
Sbjct: 296 TIAFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFM 355
Query: 539 YSDGVDEYAINKFLCQ 554
+ E I + L Q
Sbjct: 356 IGKPIAEQEIGQALLQ 371
>gi|393779596|ref|ZP_10367834.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392609916|gb|EIW92711.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 727
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/376 (36%), Positives = 214/376 (56%), Gaps = 17/376 (4%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
+ ++L L+ +G+++F+ Q E I V++K++T +++PTG GKSLCYQ+PA++L G
Sbjct: 2 TKDDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTA 61
Query: 245 LVVCPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298
+V+ PL+ALM +D +R + + H L+SS E+ E + I G K+L+V+P
Sbjct: 62 IVISPLIALMKNQVDAMRGISSTDSIAH--VLNSSLTKNEIREVMEDISAGKTKLLYVAP 119
Query: 299 ERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAM 358
E + ++ + F T IS V VDEAHC+SEW H+FRP Y +R + R N+ I+A+
Sbjct: 120 ESLIKEEYAN-FLKTVPISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNI-PIVAL 177
Query: 359 TATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR 418
TATAT D++ L + +N+ + + R NL V N + +V +
Sbjct: 178 TATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPKTKNVDADIIRFVKQ-----N 232
Query: 419 SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
S K I +S K E +++ L N IS YH+G+ AK R++ Q++F ++ VVVA
Sbjct: 233 SKKSGIIYCLSRKKVED--LAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVA 290
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
T+AFGMG+DK DV VIH+ +P+S+E Y QE GRAGRDG +C F +L M
Sbjct: 291 TIAFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFM 350
Query: 539 YSDGVDEYAINKFLCQ 554
+ E I + L Q
Sbjct: 351 IGKPIAEQEIGQALLQ 366
>gi|334338943|ref|YP_004543923.1| ATP-dependent DNA helicase RecQ [Desulfotomaculum ruminis DSM 2154]
gi|334090297|gb|AEG58637.1| ATP-dependent DNA helicase RecQ [Desulfotomaculum ruminis DSM 2154]
Length = 715
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/338 (40%), Positives = 196/338 (57%), Gaps = 15/338 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ YGY SFR GQ E I VL K T+ ++PTG GKS+CYQ+PA++ PG TLV+ PL+
Sbjct: 8 ILKKYYGYSSFRSGQEEIINRVLQGKDTLGIMPTGGGKSICYQVPALLFPGTTLVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I +++SS EE AE IR G K+L+V+PER FL+
Sbjct: 68 SLMKDQVDALHSLGIPAAYINSSLDYEEAAERIRQAGRGRYKLLYVAPERLEAKGFLARM 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ ISLV VDEAHCVS+W H+FR SY+ + A ++ + A TATAT RD+
Sbjct: 128 QSLP-ISLVAVDEAHCVSQWGHDFRTSYLAI-APFIQELPRRPVVTAFTATATEEVTRDM 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI-- 428
+ L + + R+NL SV + G N+++ F H + H I
Sbjct: 186 VRLLSLKEPRIYITGFNRENLTFSV-IRGENKRD---------FLTHYLANHANQAGIIY 235
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ E D + +L +V YH+G+ ++R+ QE+F + IR++VAT AFGMG+DK
Sbjct: 236 AATRKEVDNLHHWLKQKGHAVGKYHAGLGDQERAHNQEMFLYDDIRIMVATNAFGMGIDK 295
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+V VIHY++P+++E Y QE GRAGRDG C L
Sbjct: 296 SNVRYVIHYNMPKNMEAYYQEAGRAGRDGEPGQCILLF 333
>gi|423459146|ref|ZP_17435943.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5X2-1]
gi|401144224|gb|EJQ51754.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5X2-1]
Length = 705
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 MDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDTDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|227889998|ref|ZP_04007803.1| ATP-dependent helicase [Lactobacillus johnsonii ATCC 33200]
gi|227849442|gb|EEJ59528.1| ATP-dependent helicase [Lactobacillus johnsonii ATCC 33200]
Length = 598
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 199/329 (60%), Gaps = 14/329 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY +FR GQ I+ VL ++ + V+PTGAGKS+CYQIPA++ PG+TLV+ PL+
Sbjct: 7 VLKNVFGYTTFRPGQERVIEQVLKGRNVLAVMPTGAGKSMCYQIPALVNPGVTLVISPLI 66
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I+ L+S+ EEV +R G IK+L+++PER L D+
Sbjct: 67 SLMKDQIDSLKQNCINAAALNSATPQEEVNPILRQAYEGKIKLLYITPER-LAMDYFRYQ 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATTTTLR 368
ISLV VDEAHC+S+W H+FRP+Y ++ + ++++ N ILA+TATAT + +
Sbjct: 126 LNFLDISLVAVDEAHCISQWGHDFRPAYRQIMEGVKSIKSQPN---ILALTATATPSVQK 182
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+ L+IP N + R NL V NN +N +D + S Y
Sbjct: 183 DIADQLKIPAENYVITLFARPNLSFKVV---NNPKNTNLYLLDYIKKHPNQSGIVY---- 235
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + ++ YL N I SYH+G+ K+R+ +Q+ F +K++V+VAT AFGMG+DK
Sbjct: 236 ASTRKNVEELTDYLAQNGILTASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDK 295
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
R+V VIH + +LE Y QE GRAGRDG
Sbjct: 296 RNVRFVIHANSTPNLESYYQEAGRAGRDG 324
>gi|258539312|ref|YP_003173811.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus Lc 705]
gi|257150988|emb|CAR89960.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus Lc 705]
Length = 591
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI+ ++ KST++V+PTG GKSLCYQ+PAMILPGLTLVV PL+
Sbjct: 7 ILKEKFGYDHFRAGQKQAIERIMTGKSTLVVMPTGGGKSLCYQVPAMILPGLTLVVSPLI 66
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ E+ + + G IK+L+V+PERF +AD+
Sbjct: 67 ALMKDQVDALNDNAIPAAFINSTLDYREITARLEQARSGNIKLLYVAPERF-DADWFLQQ 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 126 LGDMNISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 184
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I RDNL V R + Y+ + + I+ S
Sbjct: 185 CQRLMIPDDGVINTGFERDNLSFKVV-----RDQDEDRYLLDYLKLNVDQSG--IIYAST 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D I +L + V YH+G+ K R+ QE F ++ ++VAT AFGMG+DK +
Sbjct: 238 RK-EVDRIYAFLQHKQLPVAKYHAGMTEKQRAANQEDFLFDRKPIMVATNAFGMGIDKSN 296
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ LE Y QE GRAGRDG
Sbjct: 297 VRFVIHAQIPKDLESYYQEAGRAGRDG 323
>gi|258508044|ref|YP_003170795.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus GG]
gi|257147971|emb|CAR86944.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus GG]
Length = 591
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI+ ++ KST++V+PTG GKSLCYQ+PAMILPGLTLVV PL+
Sbjct: 7 ILKEKFGYDHFRAGQKQAIERIMTGKSTLVVMPTGGGKSLCYQVPAMILPGLTLVVSPLI 66
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ E+ + + G IK+L+V+PERF +AD+
Sbjct: 67 ALMKDQVDALNDNAIPAAFINSTLDYREITARLEQARSGNIKLLYVAPERF-DADWFLQQ 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 126 LGDMNISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 184
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I RDNL V R + Y+ + + I+ S
Sbjct: 185 CQRLMIPDDGVINTGFERDNLSFKVV-----RDQDEDRYLLDYLKLNVDQSG--IIYAST 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D I +L + V YH+G+ K R+ QE F ++ ++VAT AFGMG+DK +
Sbjct: 238 RK-EVDRIYAFLQHKQLPVAKYHAGMTEKQRAANQEDFLFDRKPIMVATNAFGMGIDKSN 296
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ LE Y QE GRAGRDG
Sbjct: 297 VRFVIHAQIPKDLESYYQEAGRAGRDG 323
>gi|431368686|ref|ZP_19509500.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1627]
gi|431501927|ref|ZP_19515174.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1634]
gi|430584274|gb|ELB22624.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1627]
gi|430587840|gb|ELB26056.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1634]
Length = 590
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 201/327 (61%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 124 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ I+ S
Sbjct: 182 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG--IIYAST 234
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 235 RK-EVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|449094598|ref|YP_007427089.1| putative ATP-dependent nucleic acid helicase [Bacillus subtilis
XF-1]
gi|449028513|gb|AGE63752.1| putative ATP-dependent nucleic acid helicase [Bacillus subtilis
XF-1]
Length = 591
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 200/337 (59%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ FR+GQ EAI++V + +++T ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKFRNGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ +++S+Q +E+ E + ++ GA K+ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
++ LV +DEAHC+S+W H+FRPSY + L R + I+A+TATAT D
Sbjct: 128 LQGI-VVPLVAIDEAHCISQWGHDFRPSYRNIEI-LFRELHDKPVIMALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + RDNL V + G N+ ++DE + ++++H + +
Sbjct: 186 ICKQLHIQKENTVYTGFSRDNLTFKV-VKGENKDR----FIDE---YVQNNRHEAGIVYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D I L N + YH G+ R QE F +++++V+VAT AFGMG+DK
Sbjct: 238 ATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLF 334
>gi|229551890|ref|ZP_04440615.1| ATP-dependent helicase [Lactobacillus rhamnosus LMS2-1]
gi|385834951|ref|YP_005872725.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus ATCC 8530]
gi|229314746|gb|EEN80719.1| ATP-dependent helicase [Lactobacillus rhamnosus LMS2-1]
gi|355394442|gb|AER63872.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus ATCC 8530]
Length = 593
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI+ ++ KST++V+PTG GKSLCYQ+PAMILPGLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQKQAIERIMTGKSTLVVMPTGGGKSLCYQVPAMILPGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ E+ + + G IK+L+V+PERF +AD+
Sbjct: 69 ALMKDQVDALNDNAIPAAFINSTLDYREITARLEQARSGNIKLLYVAPERF-DADWFLQQ 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGDMNISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I RDNL V R + Y+ + + I+ S
Sbjct: 187 CQRLMIPDDGVINTGFERDNLSFKVV-----RDQDEDRYLLDYLKLNVDQSG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D I +L + V YH+G+ K R+ QE F ++ ++VAT AFGMG+DK +
Sbjct: 240 RK-EVDRIYAFLQHKQLPVAKYHAGMTEKQRAANQEDFLFDRKPIMVATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ LE Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDLESYYQEAGRAGRDG 325
>gi|229091823|ref|ZP_04223018.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-42]
gi|228691513|gb|EEL45269.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-42]
Length = 705
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|423684806|ref|ZP_17659614.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri SR5]
gi|371495853|gb|EHN71447.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri SR5]
Length = 608
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 203/345 (58%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY FR GQ E I VLD K ++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 16 VLKDVFGYQEFRVGQEEVINAVLDGKDCLVIMPTGGGKSLCYQIPALVFEGLTLVISPLI 75
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + L+S+ EE + G +K+L+VSPER + DF+
Sbjct: 76 SLMKDQVDQLKANGVKAECLNSTIEREEQIAIWNRVNSGQVKMLYVSPERVMMRDFMDRL 135
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ +L ++ VDEAHC+S+W H+FRP Y L ++ R I+A+TATA T +D+
Sbjct: 136 ESLNL-CMIAVDEAHCISQWGHDFRPEYASL--GQIKQRFPSVPIMALTATADEATRKDI 192
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L +P + + R N++ +V E+ V ++ + + K+ + G
Sbjct: 193 LHRLSLPEPHQYLGSFDRPNIRYTVL--------EKHKPVSQIVRYLATQKNQCGVIYCG 244
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N I SYH+G+ +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 245 SRKKVEMLTEKLCNNHIRAASYHAGLDLDERNYVQEAFQRDDIQIVVATVAFGMGINKSN 304
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V V H+ +P+++E Y QE GRAGRDG + + D DI + R
Sbjct: 305 VRFVAHFDIPKNIESYYQETGRAGRDGLPAEAVMLYDPADIVWLR 349
>gi|406997576|gb|EKE15607.1| hypothetical protein ACD_11C00117G0003 [uncultured bacterium]
Length = 719
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 198/335 (59%), Gaps = 12/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +G+D FR Q E I+ VL+K+ T +++PTG GKSLCYQ+PA+ PG+TLV+ PL+
Sbjct: 4 ILKKYFGFDEFRPLQREIIENVLNKRDTFVLMPTGGGKSLCYQLPALKFPGITLVISPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L + FL+SS +E+ + I+ G +K+L+++PER + F + F
Sbjct: 64 ALMKDQVDFLKASGVAAEFLNSSLSGDEIQRIQKEIKEGKVKILYIAPERMASNGFEN-F 122
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
SL+ VDEAHC+SEW H+FRP Y LR L+ I+A+TATAT +D+
Sbjct: 123 LQNLKPSLIAVDEAHCISEWGHDFRPDYRNLRR--LKDIFPGVPIMALTATATEKVRQDI 180
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
++ L N+ + RDNL V E+ +++ + + ++
Sbjct: 181 LNQLNFENPNIFISSFNRDNLFFRVI--------EKKNSFEKLLKLLENRRKESVIIYCF 232
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ ++ L S +YH+G+ + R + QE F +KI ++VAT+AFGMG+DK D
Sbjct: 233 SRKDTENLALNLRSEGFSALAYHAGLDSAKRKKTQEDFIQDKINIIVATIAFGMGIDKPD 292
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V V+HY+ P+SLE Y QE+GRAGRDG + C +F
Sbjct: 293 VRMVVHYTFPKSLEGYYQEVGRAGRDGLPAECVMF 327
>gi|343477533|emb|CCD11658.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 354
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/342 (39%), Positives = 202/342 (59%), Gaps = 12/342 (3%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
+ SD + L+ V+GY FR GQ E + VL +S + PTG+GKSLCYQ+ A++LP
Sbjct: 9 QWSDSLMHDTLQQVFGYPHFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPH 68
Query: 243 LTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
LTLVV PL+ALM DQL L I G + S+Q +E + + + G +K+L +S ER
Sbjct: 69 LTLVVSPLLALMQDQLGFLQRHGISAGSIDSAQSRDEANDVMARARSGELKILMISVERL 128
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
N F + + ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TAT
Sbjct: 129 KNERFRNFLNSVQ-ISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTAT 185
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSS 420
AT + D+ + I +++ R NL L V +SG++++ ++ ++ S
Sbjct: 186 ATPQVIADMQAKFAIAAEDVVTTGFYRPNLNLLVEPVSGHDKRRRLLEWMKA--RANQPS 243
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480
Y LQ + + IS +L + I ++YH+G+P + R IQ+ F + +VAT+
Sbjct: 244 IVYVTLQKTAEQ-----ISEHLNRHGIQAEAYHAGLPHEKREGIQQRFMGGRSNCIVATI 298
Query: 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
AFGMG+DK D+ V+H+ LP+S+E Y QEIGRAGRDG+ S C
Sbjct: 299 AFGMGIDKSDIRNVVHFDLPKSIENYSQEIGRAGRDGQPSDC 340
>gi|199598310|ref|ZP_03211730.1| Superfamily II DNA helicase [Lactobacillus rhamnosus HN001]
gi|199590763|gb|EDY98849.1| Superfamily II DNA helicase [Lactobacillus rhamnosus HN001]
Length = 593
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI+ ++ KST++V+PTG GKSLCYQ+PAMILPGLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQKQAIERIMTGKSTLVVMPTGGGKSLCYQVPAMILPGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ E+ + + G IK+L+V+PERF +AD+
Sbjct: 69 ALMKDQVDALNDNAIPAAFINSTLDYREITARLEQARSGNIKLLYVAPERF-DADWFLQQ 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGDMNISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I RDNL V R + Y+ + + I+ S
Sbjct: 187 CQRLMIPDDGVINTGFERDNLSFKVV-----RDQDEDRYLLDYLKLNVDQSG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D I +L + V YH+G+ K R+ QE F ++ ++VAT AFGMG+DK +
Sbjct: 240 RK-EVDRIYAFLQHKQLPVAKYHAGMTEKQRAANQEDFLFDRKPIMVATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ LE Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDLESYYQEAGRAGRDG 325
>gi|385827721|ref|YP_005865493.1| DNA helicase RecQ [Lactobacillus rhamnosus GG]
gi|259649366|dbj|BAI41528.1| DNA helicase RecQ [Lactobacillus rhamnosus GG]
Length = 593
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI+ ++ KST++V+PTG GKSLCYQ+PAMILPGLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQKQAIERIMTGKSTLVVMPTGGGKSLCYQVPAMILPGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ E+ + + G IK+L+V+PERF +AD+
Sbjct: 69 ALMKDQVDALNDNAIPAAFINSTLDYREITARLEQARSGNIKLLYVAPERF-DADWFLQQ 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGDMNISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I RDNL V R + Y+ + + I+ S
Sbjct: 187 CQRLMIPDDGVINTGFERDNLSFKVV-----RDQDEDRYLLDYLKLNVDQSG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D I +L + V YH+G+ K R+ QE F ++ ++VAT AFGMG+DK +
Sbjct: 240 RK-EVDRIYAFLQHKQLPVAKYHAGMTEKQRAANQEDFLFDRKPIMVATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ LE Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDLESYYQEAGRAGRDG 325
>gi|229156395|ref|ZP_04284489.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 4342]
gi|228627072|gb|EEK83805.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 4342]
Length = 705
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|423605483|ref|ZP_17581376.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD102]
gi|401242838|gb|EJR49209.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD102]
Length = 705
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|350266272|ref|YP_004877579.1| ATP-dependent DNA helicase RecQ [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349599159|gb|AEP86947.1| ATP-dependent DNA helicase RecQ [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 591
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 197/337 (58%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ R GQ EAI+ V + +++T ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKLRSGQEEAIRSVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ +++S+Q +E+ E + ++ GA K+ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ LV +DEAHC+S+W H+FRPSY + L R + I+A+TATAT D
Sbjct: 128 LQDID-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFRELHDKPVIMALTATATPEVHED 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + RDNL V+ G N+ ++DE + +++KH + +
Sbjct: 186 ICKQLHIQKENTVHTGFSRDNLTFKVA-KGENKDR----FIDE---YVQNNKHEAGIVYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D I L N IS YH G+ R QE F +++++V+VAT AFGMG+DK
Sbjct: 238 ATRKEADRIYERLKRNQISAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLF 334
>gi|228985910|ref|ZP_04146058.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773839|gb|EEM22257.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 705
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|47567630|ref|ZP_00238340.1| ATP-dependent DNA helicase RecQ [Bacillus cereus G9241]
gi|47555607|gb|EAL13948.1| ATP-dependent DNA helicase RecQ [Bacillus cereus G9241]
Length = 705
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISIAEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|42781899|ref|NP_979146.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 10987]
gi|217960255|ref|YP_002338815.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH187]
gi|222096315|ref|YP_002530372.1| ATP-dependent DNA helicase recq [Bacillus cereus Q1]
gi|229139452|ref|ZP_04268023.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST26]
gi|375284769|ref|YP_005105208.1| ATP-dependent DNA helicase RecQ [Bacillus cereus NC7401]
gi|423352562|ref|ZP_17330189.1| ATP-dependent DNA helicase RecQ [Bacillus cereus IS075]
gi|423372701|ref|ZP_17350041.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AND1407]
gi|423568327|ref|ZP_17544574.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-A12]
gi|42737823|gb|AAS41754.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ATCC 10987]
gi|217065979|gb|ACJ80229.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH187]
gi|221240373|gb|ACM13083.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Q1]
gi|228643999|gb|EEL00260.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BDRD-ST26]
gi|358353296|dbj|BAL18468.1| ATP-dependent DNA helicase RecQ [Bacillus cereus NC7401]
gi|401091661|gb|EJP99801.1| ATP-dependent DNA helicase RecQ [Bacillus cereus IS075]
gi|401099138|gb|EJQ07148.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AND1407]
gi|401210615|gb|EJR17366.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-A12]
Length = 705
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|425046684|ref|ZP_18450680.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 510]
gi|403023495|gb|EJY35745.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 510]
Length = 598
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 200/327 (61%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GLT+VV PL+
Sbjct: 12 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLTVVVSPLI 71
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 72 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 131
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 132 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVAADI 189
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E + +++ + +
Sbjct: 190 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLNINKNQSG---IIYAA 241
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 242 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 301
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 302 VRFVIHYQIPGSLEAYYQEAGRAGRDG 328
>gi|421770839|ref|ZP_16207518.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus LRHMDP2]
gi|421773838|ref|ZP_16210468.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus LRHMDP3]
gi|411181223|gb|EKS48412.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus LRHMDP3]
gi|411181267|gb|EKS48453.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus LRHMDP2]
Length = 593
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/327 (41%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI+ ++ KST++V+PTG GKSLCYQ+PAMILPGLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQKQAIERIMTGKSTLVVMPTGGGKSLCYQVPAMILPGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ E+ + + G IK+L+V+PERF +AD+
Sbjct: 69 ALMKDQVDALNDNAIPAAFINSTLDYREITARLEQARSGNIKLLYVAPERF-DADWFLQQ 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGDMNISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I RDNL V R + Y+ + + I+ S
Sbjct: 187 CQRLMIPDDGVINTGFERDNLSFKVV-----RDQDEDRYLLDYLKLNVDQSG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D I +L + V YH+G+ K R+ QE F ++ ++VAT AFGMG+DK +
Sbjct: 240 RK-EVDRIYAFLQHKQLPVAKYHAGMTEKQRAANQEDFLFDRKPIMVATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ LE Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDLESYYQEAGRAGRDG 325
>gi|384180700|ref|YP_005566462.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324326784|gb|ADY22044.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 705
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|209693836|ref|YP_002261764.1| ATP-dependent DNA helicase RecQ [Aliivibrio salmonicida LFI1238]
gi|208007787|emb|CAQ77909.1| ATP-dependent DNA helicase RecQ [Aliivibrio salmonicida LFI1238]
Length = 611
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR V+GY FR GQ E I VL+ K +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 19 VLRDVFGYQEFRVGQEEVINAVLEGKDSLVIMPTGGGKSLCYQIPALVFEGLTLVISPLI 78
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + L+S+ + + G IK+L+VSPER + DF+
Sbjct: 79 SLMKDQVDQLKADGVQAECLNSTIDRDAQVSIWNRVNSGQIKMLYVSPERVMMRDFMDRL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ +L ++ VDEAHC+S+W H+FRP Y L ++ R I+A+TATA T +D+
Sbjct: 139 ASLNL-CMIAVDEAHCISQWGHDFRPEYASL--GQIKQRFPNVPIMALTATADEATRKDI 195
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L +P + + R N++ +V E+ V ++ + + K+ + G
Sbjct: 196 LSRLSLPNPHEYLGSFDRPNIRYTVL--------EKHKPVSQIVRYLATQKNQCGVIYCG 247
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N I SYH+G+ +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 248 SRKKVEMLTEKLCNNHIRAASYHAGLDLDERNYVQEAFQRDDIQIVVATVAFGMGINKSN 307
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V V H+ +P+++E Y QE GRAGRDG + + D DI + R
Sbjct: 308 VRFVAHFDIPKNIESYYQETGRAGRDGLPAEAVMLYDPADIVWLR 352
>gi|229122366|ref|ZP_04251580.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 95/8201]
gi|228661215|gb|EEL16841.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 95/8201]
Length = 705
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|294617447|ref|ZP_06697080.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1679]
gi|291596301|gb|EFF27561.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1679]
Length = 607
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 199/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GLT+VV PL+
Sbjct: 21 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLTVVVSPLI 80
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 81 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 140
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 141 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVAADI 198
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 199 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 250
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 251 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 310
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 311 VRFVIHYQIPGSLEAYYQEAGRAGRDG 337
>gi|423551448|ref|ZP_17527775.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ISP3191]
gi|401187286|gb|EJQ94359.1| ATP-dependent DNA helicase RecQ [Bacillus cereus ISP3191]
Length = 705
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|321311562|ref|YP_004203849.1| putative ATP-dependent nucleic acid helicase [Bacillus subtilis
BSn5]
gi|320017836|gb|ADV92822.1| putative ATP-dependent nucleic acid helicase [Bacillus subtilis
BSn5]
Length = 591
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 199/337 (59%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ FR GQ EAI++V + +++T ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ +++S+Q +E+ E + ++ GA K+ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ LV +DEAHC+S+W H+FRPSY + L R + I+A+TATAT D
Sbjct: 128 LQGID-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFRELHDKPVIMALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + R+NL V + G N+ ++DE + ++++H + +
Sbjct: 186 ICKQLHIQKENTVYTGFSRENLTFKV-VKGENKDR----FIDE---YVQNNRHEAGIVYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D I L N + YH G+ +R QE F +++++V+VAT AFGMG+DK
Sbjct: 238 ATRKEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLF 334
>gi|229196988|ref|ZP_04323727.1| ATP-dependent DNA helicase RecQ [Bacillus cereus m1293]
gi|228586477|gb|EEK44556.1| ATP-dependent DNA helicase RecQ [Bacillus cereus m1293]
Length = 705
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|197333996|ref|YP_002154839.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri MJ11]
gi|197315486|gb|ACH64933.1| ATP-dependent DNA helicase RecQ [Vibrio fischeri MJ11]
Length = 611
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY FR GQ E I VL+ K +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 19 VLKDVFGYQEFRVGQEEVINAVLEGKDSLVIMPTGGGKSLCYQIPALVFEGLTLVISPLI 78
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + L+S+ EE + G +K+L+VSPER + DF+
Sbjct: 79 SLMKDQVDQLKANGVKAECLNSTIEREEQIAIWNRVNAGQVKMLYVSPERVMMRDFMDRL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ +L ++ VDEAHC+S+W H+FRP Y L ++ R I+A+TATA T +D+
Sbjct: 139 ESLNL-CMIAVDEAHCISQWGHDFRPEYASL--GQIKQRFPSVPIMALTATADEATRKDI 195
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L +P + + R N++ +V E+ V ++ + + K+ + G
Sbjct: 196 LHRLSLPDPHQYLGSFDRPNIRYTVL--------EKHKPVSQIVRYLATQKNQCGVIYCG 247
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N I SYH+G+ +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 248 SRKKVEMLTEKLCNNHIRAASYHAGLDLDERNYVQEAFQRDDIQIVVATVAFGMGINKSN 307
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V V H+ +P+++E Y QE GRAGRDG + + D DI + R
Sbjct: 308 VRFVAHFDIPKNIESYYQETGRAGRDGLPAEAVMLYDPADIVWLR 352
>gi|49479115|ref|YP_036901.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|301054339|ref|YP_003792550.1| ATP-dependent DNA helicase RecQ [Bacillus cereus biovar anthracis
str. CI]
gi|49330671|gb|AAT61317.1| ATP-dependent DNA helicase (RecQ) [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|300376508|gb|ADK05412.1| ATP-dependent DNA helicase RecQ [Bacillus cereus biovar anthracis
str. CI]
Length = 705
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|196032153|ref|ZP_03099567.1| ATP-dependent DNA helicase RecQ [Bacillus cereus W]
gi|228915416|ref|ZP_04079009.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228927868|ref|ZP_04090916.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228934090|ref|ZP_04096931.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228946431|ref|ZP_04108750.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|195994904|gb|EDX58858.1| ATP-dependent DNA helicase RecQ [Bacillus cereus W]
gi|228813235|gb|EEM59537.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228825604|gb|EEM71396.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228831931|gb|EEM77520.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228844359|gb|EEM89417.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 705
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|196041721|ref|ZP_03109012.1| ATP-dependent DNA helicase RecQ [Bacillus cereus NVH0597-99]
gi|196027490|gb|EDX66106.1| ATP-dependent DNA helicase RecQ [Bacillus cereus NVH0597-99]
Length = 705
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-HILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|69247249|ref|ZP_00604267.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Enterococcus faecium DO]
gi|257878112|ref|ZP_05657765.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,230,933]
gi|257881102|ref|ZP_05660755.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,502]
gi|257889689|ref|ZP_05669342.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,410]
gi|257892374|ref|ZP_05672027.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,408]
gi|260559161|ref|ZP_05831347.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C68]
gi|261207696|ref|ZP_05922381.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TC 6]
gi|289566272|ref|ZP_06446703.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium D344SRF]
gi|383328406|ref|YP_005354290.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Aus0004]
gi|406580883|ref|ZP_11056070.1| ATP-dependent DNA helicase RecQ [Enterococcus sp. GMD4E]
gi|415895156|ref|ZP_11550549.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4453]
gi|416140204|ref|ZP_11599271.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4452]
gi|427395064|ref|ZP_18887986.1| ATP-dependent DNA helicase RecQ [Enterococcus durans FB129-CNAB-4]
gi|430820279|ref|ZP_19438915.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0045]
gi|430825195|ref|ZP_19443402.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0164]
gi|430828452|ref|ZP_19446573.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0269]
gi|430830399|ref|ZP_19448457.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0333]
gi|430836119|ref|ZP_19454103.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0680]
gi|430846392|ref|ZP_19464252.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1133]
gi|430849996|ref|ZP_19467763.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1185]
gi|430854500|ref|ZP_19472213.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1392]
gi|430862059|ref|ZP_19479411.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1573]
gi|430870711|ref|ZP_19483355.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1575]
gi|430959055|ref|ZP_19486919.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1576]
gi|431009975|ref|ZP_19489500.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1578]
gi|431259067|ref|ZP_19505244.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1623]
gi|431295363|ref|ZP_19507251.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1626]
gi|431539307|ref|ZP_19517811.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1731]
gi|431745858|ref|ZP_19534696.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2134]
gi|431748632|ref|ZP_19537388.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2297]
gi|431754503|ref|ZP_19543164.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2883]
gi|431765287|ref|ZP_19553802.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4215]
gi|431766872|ref|ZP_19555332.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1321]
gi|431770492|ref|ZP_19558892.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1644]
gi|431773015|ref|ZP_19561349.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2369]
gi|431776118|ref|ZP_19564386.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2560]
gi|431778420|ref|ZP_19566631.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4389]
gi|431782219|ref|ZP_19570356.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E6012]
gi|431785394|ref|ZP_19573419.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E6045]
gi|68194922|gb|EAN09391.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Enterococcus faecium DO]
gi|257812340|gb|EEV41098.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,230,933]
gi|257816760|gb|EEV44088.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,502]
gi|257826049|gb|EEV52675.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,410]
gi|257828753|gb|EEV55360.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,231,408]
gi|260074918|gb|EEW63234.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C68]
gi|260078079|gb|EEW65785.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TC 6]
gi|289161912|gb|EFD09781.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium D344SRF]
gi|364090480|gb|EHM33059.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4452]
gi|364091728|gb|EHM34166.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4453]
gi|378938100|gb|AFC63172.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Aus0004]
gi|404453407|gb|EKA00467.1| ATP-dependent DNA helicase RecQ [Enterococcus sp. GMD4E]
gi|425724200|gb|EKU87084.1| ATP-dependent DNA helicase RecQ [Enterococcus durans FB129-CNAB-4]
gi|430439769|gb|ELA50090.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0045]
gi|430446426|gb|ELA56106.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0164]
gi|430483001|gb|ELA60100.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0333]
gi|430483560|gb|ELA60633.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0269]
gi|430488693|gb|ELA65347.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0680]
gi|430536691|gb|ELA77058.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1185]
gi|430539186|gb|ELA79448.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1133]
gi|430548159|gb|ELA88064.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1392]
gi|430549350|gb|ELA89182.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1573]
gi|430556740|gb|ELA96237.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1576]
gi|430558847|gb|ELA98247.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1575]
gi|430560470|gb|ELA99766.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1578]
gi|430577162|gb|ELB15767.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1623]
gi|430581453|gb|ELB19898.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1626]
gi|430594570|gb|ELB32539.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1731]
gi|430609761|gb|ELB46940.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2134]
gi|430613405|gb|ELB50421.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2297]
gi|430619097|gb|ELB55925.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2883]
gi|430628820|gb|ELB65251.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4215]
gi|430631745|gb|ELB68045.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1321]
gi|430635419|gb|ELB71515.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1644]
gi|430637302|gb|ELB73325.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2369]
gi|430641855|gb|ELB77649.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2560]
gi|430643966|gb|ELB79669.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E4389]
gi|430647363|gb|ELB82809.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E6045]
gi|430648020|gb|ELB83450.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E6012]
Length = 590
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 199/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 124 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|218903941|ref|YP_002451775.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH820]
gi|218536429|gb|ACK88827.1| ATP-dependent DNA helicase RecQ [Bacillus cereus AH820]
Length = 705
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|293569394|ref|ZP_06680691.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1071]
gi|294615876|ref|ZP_06695718.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1636]
gi|294623492|ref|ZP_06702340.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium U0317]
gi|406583118|ref|ZP_11058210.1| ATP-dependent DNA helicase RecQ [Enterococcus sp. GMD3E]
gi|406585470|ref|ZP_11060459.1| ATP-dependent DNA helicase RecQ [Enterococcus sp. GMD2E]
gi|410936379|ref|ZP_11368245.1| ATP-dependent helicase RecQ [Enterococcus sp. GMD5E]
gi|447912995|ref|YP_007394407.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium NRRL B-2354]
gi|291587920|gb|EFF19771.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1071]
gi|291591262|gb|EFF22929.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1636]
gi|291597086|gb|EFF28289.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium U0317]
gi|404457169|gb|EKA03741.1| ATP-dependent DNA helicase RecQ [Enterococcus sp. GMD3E]
gi|404462658|gb|EKA08377.1| ATP-dependent DNA helicase RecQ [Enterococcus sp. GMD2E]
gi|410735169|gb|EKQ77084.1| ATP-dependent helicase RecQ [Enterococcus sp. GMD5E]
gi|445188704|gb|AGE30346.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium NRRL B-2354]
Length = 607
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 199/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GLT+VV PL+
Sbjct: 21 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLTVVVSPLI 80
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 81 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 140
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 141 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVAADI 198
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 199 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 250
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 251 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 310
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 311 VRFVIHYQIPGSLEAYYQEAGRAGRDG 337
>gi|430844416|ref|ZP_19462314.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1050]
gi|431228472|ref|ZP_19501613.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1622]
gi|430497006|gb|ELA73065.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1050]
gi|430574774|gb|ELB13537.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1622]
Length = 590
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 199/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDDFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 124 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|431623566|ref|ZP_19522921.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1904]
gi|430603231|gb|ELB40762.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1904]
Length = 590
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 199/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 124 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|398311054|ref|ZP_10514528.1| ATP-dependent DNA helicase RecQ [Bacillus mojavensis RO-H-1]
Length = 595
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 201/338 (59%), Gaps = 14/338 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ R GQ EAI+ V + +++T+ ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKLRRGQEEAIRSVTEARQNTVCIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +++SSQ +E+ E + ++ GA K+ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGIKAAYINSSQTNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVE-CILAMTATATTTTLR 368
+ + LV +DEAHC+S+W H+FRPSY + +L LN + I+A+TATAT
Sbjct: 128 LQSID-VPLVAIDEAHCISQWGHDFRPSYRNI--EILFHELNDKPVIMALTATATPEVHD 184
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+ L I N + RDNL L V+ G N+ ++DE + + +KH +
Sbjct: 185 DICRQLHIQKENTVYTGFSRDNLTLKVA-KGENKDR----FIDE---YVKRNKHEAGIVY 236
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ E D I L N IS YH G+ + R QE F +++++V+VAT AFGMG+DK
Sbjct: 237 TATRKEADRIYERLKRNQISAGRYHGGLQDEVRKEQQERFLNDELQVMVATSAFGMGIDK 296
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 297 SNIRFVLHAQIPKDMESYYQEAGRAGRDGLDSECVLLF 334
>gi|314938768|ref|ZP_07846042.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133a04]
gi|314941132|ref|ZP_07848029.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133C]
gi|314947917|ref|ZP_07851322.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0082]
gi|314953028|ref|ZP_07855988.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133A]
gi|314993343|ref|ZP_07858713.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133B]
gi|314997596|ref|ZP_07862527.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133a01]
gi|389868415|ref|YP_006375838.1| ATP-dependent helicase RecQ [Enterococcus faecium DO]
gi|424792878|ref|ZP_18219062.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium V689]
gi|424811332|ref|ZP_18236609.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium S447]
gi|424847818|ref|ZP_18272365.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R501]
gi|424858850|ref|ZP_18282865.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R499]
gi|424913288|ref|ZP_18336659.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R497]
gi|424952314|ref|ZP_18367342.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R496]
gi|424952691|ref|ZP_18367697.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R494]
gi|424957441|ref|ZP_18372167.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R446]
gi|424959682|ref|ZP_18374250.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1986]
gi|424965033|ref|ZP_18379062.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1190]
gi|424968888|ref|ZP_18382484.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1140]
gi|424972551|ref|ZP_18385884.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1139]
gi|424974356|ref|ZP_18387592.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1137]
gi|424978717|ref|ZP_18391616.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1123]
gi|424982459|ref|ZP_18395123.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV99]
gi|424985073|ref|ZP_18397576.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV69]
gi|424987539|ref|ZP_18399911.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV38]
gi|424992222|ref|ZP_18404303.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV26]
gi|424995892|ref|ZP_18407738.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV168]
gi|424999782|ref|ZP_18411380.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV165]
gi|425002581|ref|ZP_18414003.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV161]
gi|425006107|ref|ZP_18417301.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV102]
gi|425007735|ref|ZP_18418852.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV1]
gi|425012800|ref|ZP_18423575.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E422]
gi|425015836|ref|ZP_18426425.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E417]
gi|425018897|ref|ZP_18429293.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C621]
gi|425020834|ref|ZP_18431122.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C497]
gi|425026970|ref|ZP_18435011.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C1904]
gi|425033540|ref|ZP_18438502.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 515]
gi|425037211|ref|ZP_18441895.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 514]
gi|425040332|ref|ZP_18444811.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 513]
gi|425043917|ref|ZP_18448114.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 511]
gi|425049286|ref|ZP_18453147.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 509]
gi|425052147|ref|ZP_18455773.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 506]
gi|425061949|ref|ZP_18465142.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 503]
gi|313588313|gb|EFR67158.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133a01]
gi|313592170|gb|EFR71015.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133B]
gi|313594903|gb|EFR73748.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133A]
gi|313599992|gb|EFR78835.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133C]
gi|313641906|gb|EFS06486.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0133a04]
gi|313645686|gb|EFS10266.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX0082]
gi|388533664|gb|AFK58856.1| ATP-dependent helicase RecQ [Enterococcus faecium DO]
gi|402916920|gb|EJX37748.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium V689]
gi|402917408|gb|EJX38198.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium S447]
gi|402918743|gb|EJX39406.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R501]
gi|402926766|gb|EJX46785.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R499]
gi|402927305|gb|EJX47279.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R496]
gi|402927455|gb|EJX47419.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R497]
gi|402940784|gb|EJX59577.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R494]
gi|402943563|gb|EJX62043.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium R446]
gi|402945188|gb|EJX63556.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1190]
gi|402949712|gb|EJX67752.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1986]
gi|402950439|gb|EJX68443.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1140]
gi|402953962|gb|EJX71626.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1139]
gi|402956551|gb|EJX73998.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1137]
gi|402960789|gb|EJX77887.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium P1123]
gi|402961006|gb|EJX78084.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV99]
gi|402966996|gb|EJX83591.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV69]
gi|402974144|gb|EJX90211.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV26]
gi|402974207|gb|EJX90272.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV38]
gi|402975471|gb|EJX91426.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV168]
gi|402977646|gb|EJX93444.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV165]
gi|402983086|gb|EJX98513.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV161]
gi|402984269|gb|EJX99588.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV102]
gi|402991361|gb|EJY06155.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E422]
gi|402993844|gb|EJY08425.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E417]
gi|402994405|gb|EJY08940.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium ERV1]
gi|403000095|gb|EJY14244.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C621]
gi|403005310|gb|EJY19031.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C1904]
gi|403008323|gb|EJY21841.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium C497]
gi|403009543|gb|EJY22979.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 515]
gi|403011931|gb|EJY25208.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 514]
gi|403013214|gb|EJY26340.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 513]
gi|403017479|gb|EJY30221.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 511]
gi|403028450|gb|EJY40273.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 509]
gi|403035389|gb|EJY46781.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 506]
gi|403040149|gb|EJY51249.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 503]
Length = 598
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 199/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GLT+VV PL+
Sbjct: 12 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLTVVVSPLI 71
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 72 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 131
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 132 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVAADI 189
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 190 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 241
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 242 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 301
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 302 VRFVIHYQIPGSLEAYYQEAGRAGRDG 328
>gi|196043483|ref|ZP_03110721.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 03BB108]
gi|225864791|ref|YP_002750169.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 03BB102]
gi|196025792|gb|EDX64461.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 03BB108]
gi|225790780|gb|ACO30997.1| ATP-dependent DNA helicase RecQ [Bacillus cereus 03BB102]
Length = 705
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|165868634|ref|ZP_02213294.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0488]
gi|167631805|ref|ZP_02390132.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0442]
gi|167637571|ref|ZP_02395850.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0193]
gi|170685476|ref|ZP_02876700.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0465]
gi|177649646|ref|ZP_02932648.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0174]
gi|190565352|ref|ZP_03018272.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str.
Tsiankovskii-I]
gi|227814370|ref|YP_002814379.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. CDC 684]
gi|254685381|ref|ZP_05149241.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str.
CNEVA-9066]
gi|254722788|ref|ZP_05184576.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A1055]
gi|254737836|ref|ZP_05195539.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Western
North America USA6153]
gi|254742990|ref|ZP_05200675.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Kruger B]
gi|254752151|ref|ZP_05204188.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Vollum]
gi|254760670|ref|ZP_05212694.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Australia
94]
gi|386736560|ref|YP_006209741.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. H9401]
gi|421510247|ref|ZP_15957143.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. UR-1]
gi|421636606|ref|ZP_16077205.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. BF1]
gi|164715360|gb|EDR20877.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0488]
gi|167514120|gb|EDR89487.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0193]
gi|167532103|gb|EDR94739.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0442]
gi|170670836|gb|EDT21575.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0465]
gi|172084720|gb|EDT69778.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0174]
gi|190563379|gb|EDV17344.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str.
Tsiankovskii-I]
gi|227007076|gb|ACP16819.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. CDC 684]
gi|384386412|gb|AFH84073.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. H9401]
gi|401819703|gb|EJT18877.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. UR-1]
gi|403397134|gb|EJY94371.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. BF1]
Length = 705
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEEPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|71282216|ref|YP_266851.1| ATP-dependent DNA helicase RecQ [Colwellia psychrerythraea 34H]
gi|71147956|gb|AAZ28429.1| ATP-dependent DNA helicase RecQ [Colwellia psychrerythraea 34H]
Length = 615
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/374 (35%), Positives = 221/374 (59%), Gaps = 16/374 (4%)
Query: 180 VRDEASDENLGRLL---RLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIP 236
+ E S EN LL + +GY+SFR+GQ + I +L + +++++PTG GKSLCYQ+P
Sbjct: 14 ISTELSAENNALLLDTLKHYFGYESFREGQAKIINSLLQGQDSLVLMPTGGGKSLCYQLP 73
Query: 237 AMILPGLTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLF 295
A++LPG+T+VV PL+ALM DQ+ L I F++SS E+++ + G IK+L+
Sbjct: 74 AVLLPGVTVVVSPLIALMKDQVDGLTRQGISAAFINSSLEQSEISDIFARLGRGEIKLLY 133
Query: 296 VSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECI 355
V+PER N FL L SL +DEAHC+S+W H+FRP+Y +L+ L+ +
Sbjct: 134 VAPERLTNYYFLQSLNQLPL-SLFAIDEAHCISQWGHDFRPAYTKLQC--LKQNFPTVPV 190
Query: 356 LAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFS 415
+A+TATA TT +D+++ L +P + + R N++ +++ N + ++
Sbjct: 191 MALTATADVTTRKDILNQLALPNPYIHLDSFDRPNIRFTLAPKYNGEK--------QLLG 242
Query: 416 FHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
+ + + ++ + +++YL + I+ +YH+G+ + RS +QE F + I++
Sbjct: 243 YIKKKGEDSGIIYCNSRWQVEKLAKYLAASGINCAAYHAGLENEIRSLVQEGFTKDNIQI 302
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLR 535
V+ATVAFG+G++K +V VIH+ P +LE Y QEIGRAGRDG + +DD R++
Sbjct: 303 VIATVAFGLGINKPNVRYVIHFEPPRTLESYYQEIGRAGRDGLNAEALFLVDDKDVARIK 362
Query: 536 SLMYSDGVDEYAIN 549
+ S+G + +N
Sbjct: 363 KRI-SEGDNPQRVN 375
>gi|389816331|ref|ZP_10207494.1| ATP-dependent DNA helicase RecQ [Planococcus antarcticus DSM 14505]
gi|388465324|gb|EIM07643.1| ATP-dependent DNA helicase RecQ [Planococcus antarcticus DSM 14505]
Length = 590
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 202/337 (59%), Gaps = 11/337 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E+ +LL+ +GY+SFR GQ +AI V + +++ V+PTG GKS+CYQIPA+++ G T+V
Sbjct: 3 ESAKKLLQSHFGYESFRVGQEQAITQVFEGHNSICVMPTGGGKSMCYQIPALVMEGTTIV 62
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL++LM DQ+ L I +++SS +EV ET+ +Q GAIK+L+++PER +
Sbjct: 63 VSPLISLMKDQVDALLAAGIPAAYINSSLDFDEVRETLMDVQRGAIKLLYIAPERLDSEM 122
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
FL+ + L+ VDEAHC+S+W H+FRPSY RL + + N +LA+TATAT
Sbjct: 123 FLNELQGVH-VPLIAVDEAHCISQWGHDFRPSY-RLISRMTELFPNNPTVLALTATATPQ 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D+ L+I + I R NL SV + G +R+ YV ++ K I
Sbjct: 181 VREDICRILDIEERHTIMTGFERPNLTFSV-IRGQDRERFVKEYV------AKNDKEAGI 233
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ + + D + L I YH+G+P +R QE F ++++ V+VAT AFGMG
Sbjct: 234 IYAATRK-TVDSVYEMLLKKGIKAAKYHAGMPDNERKIGQERFLNDEVTVMVATNAFGMG 292
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+DK ++ VIHY +P+++E Y QE GRAGRDG S C
Sbjct: 293 IDKSNIRFVIHYQVPKNMESYYQEAGRAGRDGLPSAC 329
>gi|300361710|ref|ZP_07057887.1| ATP-dependent helicase RecQ [Lactobacillus gasseri JV-V03]
gi|300354329|gb|EFJ70200.1| ATP-dependent helicase RecQ [Lactobacillus gasseri JV-V03]
Length = 475
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 212/361 (58%), Gaps = 17/361 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ V+GY +FR GQ + I +VL ++ + V+PTGAGKS+CYQIPA++ GLTLV+ PL
Sbjct: 5 QVLKDVFGYTTFRPGQEKVIDLVLKGENVLAVMPTGAGKSMCYQIPALVNSGLTLVISPL 64
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ L+S+ EEV +R G IK+L+V+PER L D+
Sbjct: 65 ISLMKDQIDSLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLLYVTPER-LAMDYFRY 123
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
ISLV VDEAHC+S+W H+FRP+Y ++ + + N ILA+TATAT + +D
Sbjct: 124 QLNFLDISLVAVDEAHCISQWGHDFRPAYRQIMDGVKSIKSNPN-ILALTATATPSVQKD 182
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L+IP N + + R NL V +N +N +D + S Y +
Sbjct: 183 IAEQLKIPNKNYVITSFARPNLSFKVV---DNPKNTNLYLLDYIKKHPNESGIIY--AST 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
KH E ++ YL N I SYH+G+ ++RS +Q+ F +K++V+VAT AFGMG+DKR
Sbjct: 238 RKHVEE--LTDYLAQNGILTASYHAGLSNEERSDVQDAFQFDKVQVIVATNAFGMGIDKR 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFRLRSLMYSDGVDE 545
+V VIH + +LE Y QE GRAGRDG C + DI +R + SD DE
Sbjct: 296 NVRFVIHANSTPNLESYYQEAGRAGRDGER--CEGIMIYHPKDIRLYRW-FIEQSDLADE 352
Query: 546 Y 546
Y
Sbjct: 353 Y 353
>gi|428279555|ref|YP_005561290.1| hypothetical protein BSNT_03131 [Bacillus subtilis subsp. natto
BEST195]
gi|291484512|dbj|BAI85587.1| hypothetical protein BSNT_03131 [Bacillus subtilis subsp. natto
BEST195]
Length = 591
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 199/337 (59%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ FR GQ EAI++V + +++T ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ +++S+Q +E+ E + ++ GA K+ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ LV +DEAHC+S+W H+FRPSY + L R + I+A+TATAT D
Sbjct: 128 LQGID-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFRELHDKPVIMALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + R+NL V + G N+ ++DE + ++++H + +
Sbjct: 186 ICKQLHIQKENTVYTGFSRENLTFKV-VKGENKDR----FIDE---YVQNNRHEAGIVYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D I L N + YH G+ +R QE F +++++V+VAT AFGMG+DK
Sbjct: 238 ATRKEADRIYERLKRNQVRAGRYHGGMADDERKEQQERFLNDELQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLF 334
>gi|90414260|ref|ZP_01222240.1| putative ATP-dependent DNA helicase RecQ [Photobacterium profundum
3TCK]
gi|90324707|gb|EAS41248.1| putative ATP-dependent DNA helicase RecQ [Photobacterium profundum
3TCK]
Length = 615
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 136/346 (39%), Positives = 208/346 (60%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ V+GY SFR GQ E I+ V++ + ++++PTG GKSLCYQIPA+I+PG+TLV+ PL
Sbjct: 19 KILQDVFGYQSFRIGQQEVIEAVIEGQDCLVIMPTGGGKSLCYQIPALIMPGITLVISPL 78
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + +++S+ EEV ET ++ G +K+++VSPER L DF+
Sbjct: 79 ISLMKDQVDQLNANGVAAAYINSTMSREEVMETFLAMREGDLKLVYVSPERVLMRDFIER 138
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
T L S+V VDEAHCVS+W H+FRP Y L L+ I+A+TATA TT D
Sbjct: 139 LYETPL-SMVAVDEAHCVSQWGHDFRPEYAAL--GTLKQHFENLPIMALTATADDTTRND 195
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ S L + + + R N++ ++ L + + + Y+ V + + S
Sbjct: 196 ITSRLGLTNPHAYLGSFDRPNIRYTL-LEKHKPMTQLTRYLTGV-----RGQCGIVYCNS 249
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K E I+ L D+ + +YH+G+ +R R+QE F + I +VVATVAFGMG++K
Sbjct: 250 RKRVEQ--IAEKLRDSGVRAAAYHAGLDHDERGRVQESFQRDDIHIVVATVAFGMGINKP 307
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+HY +P ++E Y QE GRAGRDG + +F D D+ + R
Sbjct: 308 NVRFVVHYDIPRNIESYYQETGRAGRDGLPAEAVMFYDPSDLAWLR 353
>gi|118478170|ref|YP_895321.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis str. Al
Hakam]
gi|229185033|ref|ZP_04312223.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BGSC 6E1]
gi|376266680|ref|YP_005119392.1| ATP-dependent DNA helicase RecQ [Bacillus cereus F837/76]
gi|118417395|gb|ABK85814.1| ATP-dependent DNA helicase, RecQ-like protein [Bacillus
thuringiensis str. Al Hakam]
gi|228598508|gb|EEK56138.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BGSC 6E1]
gi|364512480|gb|AEW55879.1| ATP-dependent DNA helicase RecQ [Bacillus cereus F837/76]
Length = 705
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|377811945|ref|YP_005044385.1| RecQ familyATP-dependent DNA helicase [Burkholderia sp. YI23]
gi|357941306|gb|AET94862.1| ATP-dependent DNA helicase, RecQ family [Burkholderia sp. YI23]
Length = 589
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/345 (37%), Positives = 203/345 (58%), Gaps = 11/345 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D L LR V+G+ + R GQ + I+ V+D + T+ V+PTGAGKSLCYQ+PA+ G+TL
Sbjct: 9 DRKLENALRRVFGFPNLRAGQEDVIRSVMDGRDTLAVMPTGAGKSLCYQLPALQFEGMTL 68
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
+V PL++LM DQ L I L+S+ E+ + + + A+++LFV+PER ++
Sbjct: 69 IVSPLISLMRDQTAKLTDAGIANAVLNSALSASELHDAMDALGRHALRMLFVTPERLVDP 128
Query: 305 DFLSIFTATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
+F + A + I+LVV+DEAHC+S+W H+FRP+Y+ L ++ L ILA+TATA
Sbjct: 129 EFHAQLKALGVPEIALVVIDEAHCISQWGHDFRPAYVELIQAI--NLLGRPPILALTATA 186
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
T + D+M L++ +N+I RDNL+ +V N+ ++ V E+ + S
Sbjct: 187 TPAVMTDIMRELQLRRANVIHTGVYRDNLRFAVEQMTNS--EDKRKRVVELACSEKGSGI 244
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
Y ++ E + + L + ++ + YH + A RS Q+ F ++ RV+VAT AF
Sbjct: 245 VYCATVA----ECEKLHVSLIEAGVAAEHYHGKLAASARSASQDAFMEDRARVIVATNAF 300
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
GMG+DK D+ VIH +P SL+ Y QE GR GRDG + C L +
Sbjct: 301 GMGIDKPDIRFVIHAQMPGSLDAYYQEAGRGGRDGEPARCTLLFE 345
>gi|229173465|ref|ZP_04301009.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MM3]
gi|228610159|gb|EEK67437.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MM3]
Length = 705
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL +V + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFTV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDTDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|386716047|ref|YP_006182371.1| ATP-dependent DNA helicase RecQ [Halobacillus halophilus DSM 2266]
gi|384075604|emb|CCG47100.1| ATP-dependent DNA helicase RecQ [Halobacillus halophilus DSM 2266]
Length = 713
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 197/336 (58%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ YGY SFR GQ EAI VL ++T+ V+PTG GKSLCYQIP + L G +++ PL+
Sbjct: 8 ILQKYYGYSSFRKGQKEAISHVLHDRNTLAVMPTGGGKSLCYQIPGLSLEGTAIIISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + + ++ G K ++V+PERF + FLS
Sbjct: 68 SLMKDQVDALNSYGIAATYINSSLTAGEQRQRLHDLRQGRYKFVYVAPERFDSPQFLSTI 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L SL+ DEAHC+S+W H+FRPSY + +L + N+ ++A+TATAT +RD+
Sbjct: 128 QSIPL-SLIAFDEAHCISQWGHDFRPSYRSIVPTLYQI-TNLPVLMALTATATQEVIRDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+++P +++ RDNL + + G ++++ +V+E R ++ I +
Sbjct: 186 KHLIDVPDESIVNTGFARDNLSFRI-IKGRDKRD----FVEEYLK-TRPNESGIIYTATR 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K + D + YL S YH+G+ R + Q F ++I ++AT AFGMG+DK +
Sbjct: 240 K--DADSLQHYLSKKGFSAGKYHAGMTENQRKQAQVDFVQDEITTIIATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHYS+P ++E Y QE GRAGRDG C L
Sbjct: 298 VRYVIHYSMPMNIESYYQEAGRAGRDGEPGDCALLF 333
>gi|296110906|ref|YP_003621287.1| ATP-dependent DNA helicase RecQ [Leuconostoc kimchii IMSNU 11154]
gi|295832437|gb|ADG40318.1| ATP-dependent DNA helicase RecQ [Leuconostoc kimchii IMSNU 11154]
Length = 603
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR +GYD+FR GQLE I+ VL + + ++PTG GKS+ YQ+PAM+ G+TLV+ PL+
Sbjct: 9 ILREKFGYDNFRTGQLEVIEKVLAHQHALAIMPTGGGKSITYQLPAMLFDGITLVISPLI 68
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I FL+S+ + A+ + ++ G K+L+VSPER F S F
Sbjct: 69 SLMKDQVDGLDAMGIAATFLNSTLSGQVQAQRMSDLRQGVYKMLYVSPERLEIPSFFS-F 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I L+ +DEAH +S+W H+FRPSY+ + LL +L +TATAT +++
Sbjct: 128 IQQLPIELIAIDEAHVMSQWGHDFRPSYLNI-LPLLAEIPGHPAVLGLTATATDRVRQNL 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LE+P N I RDNL L ++ + + RQ YV + + R +K + + +
Sbjct: 187 QQLLEVPDENTILTGFARDNLALKIAHNVDKRQ-----YVQD---YLRENKEHSGIIYAA 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + +L I YH+G+P ++R +QE F ++++V+VAT AFGMG++K +
Sbjct: 239 TRKQVDELYDFLNKKGIKAGHYHAGLPERERQAMQEAFLFDEVQVIVATNAFGMGINKPN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHYS+P ++E Y QEIGRAGRDG
Sbjct: 299 VRFVIHYSVPGNIEAYYQEIGRAGRDG 325
>gi|218245896|ref|YP_002371267.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8801]
gi|218166374|gb|ACK65111.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8801]
Length = 709
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/343 (40%), Positives = 199/343 (58%), Gaps = 14/343 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L + L+ +GYDSFR GQ + I+ L + ++++PTG GKSLC+Q+PA++ PGLT+VV
Sbjct: 6 SLEQSLKYFFGYDSFRPGQAKIIQEALQNRDLLVIMPTGGGKSLCFQLPALLKPGLTVVV 65
Query: 248 CPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN--- 303
PL+ALM DQ+ L I FL+SS + EEV + I G IK+L+V+PER LN
Sbjct: 66 SPLIALMQDQVDTLLDNGIGATFLNSSLKSEEVRSREQAIIKGKIKLLYVAPERLLNDKF 125
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
FL +S +DEAHCVSEW H+FRP Y +L+ LR R +LA+TATAT
Sbjct: 126 TPFLDFLAEKIGVSFFAIDEAHCVSEWGHDFRPEYRQLKQ--LRQRYPQVPMLALTATAT 183
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D++ L + + + R NL V ER +Y +++ S+ R K
Sbjct: 184 KRVREDIIHQLALKQPGIHITSFNRPNLDYDVQF------KERRSY-NKLLSYIRQQKGS 236
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I+ + D+ R L ++ I YH+G+ + R+ Q F + ++V+VAT+AFG
Sbjct: 237 GIVYCLSRRSVDDIAFR-LQNDGIKALPYHAGMADEARALNQNRFIRDDVQVMVATIAFG 295
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
MG++K DV VIHY LP +LE Y QE GRAGRDG + C LF
Sbjct: 296 MGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAECTLFF 338
>gi|317127470|ref|YP_004093752.1| ATP-dependent DNA helicase RecQ [Bacillus cellulosilyticus DSM
2522]
gi|315472418|gb|ADU29021.1| ATP-dependent DNA helicase RecQ [Bacillus cellulosilyticus DSM
2522]
Length = 718
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 217/373 (58%), Gaps = 19/373 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L+ +GYDSFR GQ + I +L + TM ++PTG GKS+CYQIP+++LPGLT+V+ PL+
Sbjct: 8 FLKQHFGYDSFRSGQEQIITNILCRNRTMGIMPTGGGKSICYQIPSLLLPGLTIVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I F++S+ +V E + L++ G K+++++PER F++
Sbjct: 68 SLMKDQVDELKELGISSTFINSTLSNNDVNERLSLMRQGHYKLVYIAPERLDAPSFINSL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ +SLV +DEAHC+S+W H+FRPSYM++ LL +LA+TAT+T D+
Sbjct: 128 SGIE-VSLVAIDEAHCLSQWGHDFRPSYMKI-PHLLEKLDTKPVVLALTATSTPEVTDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
A+ I S ++Q R NL V L G +R + Y+ R+ I+ +
Sbjct: 186 CVAMSIDKSFVVQTGFARKNLSFHV-LKGIDRDHYIKNYIT------RNIDQSGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E + I L ++SV YH G+ ++R +QE F + ++V+VAT AFGMG++K +
Sbjct: 239 RK-EVERIYTLLSSMNLSVGKYHGGMSNQEREFMQEQFVYDDLKVMVATNAFGMGINKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMY--SDGVDEY 546
V VIHY +P ++E Y QE GRAGRDG S C L DI R++ + +D DE
Sbjct: 298 VRFVIHYQIPRNIESYYQEAGRAGRDGEESSCILLFSPQDI---RIQQFLIEQTDMTDER 354
Query: 547 AINKFL-CQVFTN 558
N++ Q TN
Sbjct: 355 KENEYRKLQAMTN 367
>gi|188589125|ref|YP_001921452.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum E3 str.
Alaska E43]
gi|188499406|gb|ACD52542.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum E3 str.
Alaska E43]
Length = 812
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 197/339 (58%), Gaps = 15/339 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL YGY SFR GQ I ++D + ++PTG GKS+CYQ+PA+I GLT+V+ PL
Sbjct: 7 ELLEKYYGYKSFRKGQENIISNIIDGNDVLAIMPTGGGKSICYQVPALIFEGLTIVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I+G F++SS E I I+ G K+L+V+PER + +FL++
Sbjct: 67 ISLMKDQVDALKDMGINGEFINSSISSAEENRVIDNIRNGQCKILYVAPERLESLNFLNV 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRA--SLLRARLNVECILAMTATATTTTL 367
+ S +S + +DEAHC+S+W H+FR SY ++ LL+ R I A TATA+
Sbjct: 127 ISECS-VSQIAIDEAHCISQWGHDFRTSYTKVSGFIKLLKTR---PIITAFTATASEEVR 182
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++ L + + R+NL ++V SG ++ +Y+ + ++ S +
Sbjct: 183 EDIIKLLNLNKPKIFITGFDRENLLINVIKSG-----DKKSYLHNYINNNKESSG---VI 234
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ E D I L N S+ YH+G+ DR + QE F ++ ++VAT AFGMG+D
Sbjct: 235 YAATRKEVDKIHEELSHNGFSITKYHAGLSENDRKQNQEDFIYDRSNIMVATNAFGMGID 294
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
K ++ V+HY++P+++E Y QEIGRAGRDG S C L
Sbjct: 295 KPNIRFVVHYNMPKNIEGYYQEIGRAGRDGEKSECILLF 333
>gi|423402487|ref|ZP_17379660.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-2]
gi|423476816|ref|ZP_17453531.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6X1-1]
gi|401650759|gb|EJS68328.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG2X1-2]
gi|402433123|gb|EJV65178.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6X1-1]
Length = 705
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + ++ +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RIVDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|423575539|ref|ZP_17551658.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-D12]
gi|401208864|gb|EJR15624.1| ATP-dependent DNA helicase RecQ [Bacillus cereus MSX-D12]
Length = 705
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYVHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDNDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|229103419|ref|ZP_04234101.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-28]
gi|228679915|gb|EEL34110.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-28]
Length = 705
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VL+ K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CKTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V++AT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|420158748|ref|ZP_14665562.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea str. Holt
25]
gi|394763235|gb|EJF45355.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea str. Holt
25]
Length = 727
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 139/376 (36%), Positives = 213/376 (56%), Gaps = 17/376 (4%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
+ ++L L+ +G+++F+ Q E I V++K++T +++PTG GKSLCYQ+PA++L G
Sbjct: 2 TKDDLHSALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTA 61
Query: 245 LVVCPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298
+V+ PL+ALM +D +R + + H L+SS E+ E + I G K+L+V+P
Sbjct: 62 IVISPLIALMKNQVDAMRGISSTDSIAH--VLNSSLTKNEIREVMEDISAGKTKLLYVAP 119
Query: 299 ERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAM 358
E + + + F T IS V VDEAHC+SEW H+FRP Y +R + R N+ I+A+
Sbjct: 120 ESLIKEKYAN-FLKTVPISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNI-PIVAL 177
Query: 359 TATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR 418
TATAT D++ L + +N+ + + R NL V N + +V +
Sbjct: 178 TATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPKTKNVDADIIRFVKQ-----N 232
Query: 419 SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
S K I +S K E +++ L N IS YH+G+ AK R++ Q++F ++ VVVA
Sbjct: 233 SKKSGIIYCLSRKKVED--LAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVA 290
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
T+AFGMG+DK DV VIH+ +P+S+E Y QE GRAGRDG +C F +L M
Sbjct: 291 TIAFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFM 350
Query: 539 YSDGVDEYAINKFLCQ 554
+ E I + L Q
Sbjct: 351 IGKPIAEQEIGQALLQ 366
>gi|295692937|ref|YP_003601547.1| ATP-dependent DNA helicase recq [Lactobacillus crispatus ST1]
gi|295031043|emb|CBL50522.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus ST1]
Length = 589
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N +L+ ++GY +FR GQ + I +VL K++ + V+PTG GKS+CYQIPA+I G+TLV+
Sbjct: 2 NPEEVLKDIFGYTNFRPGQKQVIDLVLKKQNVLAVMPTGGGKSICYQIPALINSGVTLVI 61
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ +L I+ L+S+ EEV +R G IK+++++PER L D+
Sbjct: 62 SPLISLMKDQIDNLKQNGINAAALNSTTPQEEVNPILRQAYEGKIKLIYITPER-LAIDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
I LV VDEAHC+S+W H+FRP+Y +L + L++R N ILA+TATAT
Sbjct: 121 FRYQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQLLDGINSLKSRPN---ILALTATATP 177
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L IP N+I + R N+ V N+ QN Y+ E H+ K
Sbjct: 178 AVQDDICEQLNIPKENMIVTSFARPNISFKVV---NSPQNT-PLYISEYIKAHQD-KAGI 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I + K E+ ++ YL ISV +YH G+ + +RS++QE F ++ +V+VAT AFGM
Sbjct: 233 IYTNTRKKVES--LTDYLAKKGISVGAYHGGMDSSERSQVQEAFQFDEFQVIVATNAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLS 520
G+DK +V VIH S ++E Y QE GRAGRDG S
Sbjct: 291 GIDKSNVRFVIHASSARNMESYYQEAGRAGRDGEES 326
>gi|403235010|ref|ZP_10913596.1| ATP-dependent DNA helicase [Bacillus sp. 10403023]
Length = 595
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/343 (39%), Positives = 210/343 (61%), Gaps = 15/343 (4%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E ++L+ +GY SFR GQ I+ +L T+ ++PTG GKSLCYQIPA++ G+T+V
Sbjct: 3 EQAKQVLQSYFGYPSFRPGQESIIENILQGNDTVAIMPTGGGKSLCYQIPALLFEGITIV 62
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL++LM DQ+ L V I +++SS E+ E ++ ++G K+++++PER ++
Sbjct: 63 ISPLISLMKDQVDTLLGVGISATYINSSISMPEIQERLQDSRLGRYKIIYIAPERLESSQ 122
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARL-NVECILAMTATATT 364
F S+ T+ IS++ VDEAHC+S+W H+FRPSY + + A L + + A+TATAT
Sbjct: 123 FRSLLTSIP-ISMIAVDEAHCISQWGHDFRPSYRNIHYMI--AELPSKPVVAALTATATV 179
Query: 365 TTLRDVMSALEI-PLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D+ S LEI PLS I R+NL +V L G N++ D V SF + +K++
Sbjct: 180 EVKDDICSQLEIDPLSVFI-TGFARENLTFNV-LKGENKR-------DFVKSFLQENKNF 230
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
+ + E + + +L + V YH+G+ ++R + QE F + + V++AT AFG
Sbjct: 231 SGIVYAATRREVNELHSFLEKDGFLVGKYHAGLSDEERKKAQEDFLFDTVNVMIATNAFG 290
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
MG+DK +V VIHY+LP+++E Y QE GRAGRDG S C+L
Sbjct: 291 MGIDKSNVRFVIHYNLPKNIEAYYQEAGRAGRDGEKSDCYLLF 333
>gi|423447358|ref|ZP_17424237.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5O-1]
gi|401131354|gb|EJQ39008.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG5O-1]
Length = 705
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VL+ K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CKTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V++AT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAEVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|229116327|ref|ZP_04245717.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock1-3]
gi|423379378|ref|ZP_17356662.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1O-2]
gi|423546120|ref|ZP_17522478.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB5-5]
gi|423624078|ref|ZP_17599856.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD148]
gi|228667159|gb|EEL22611.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock1-3]
gi|401181933|gb|EJQ89080.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB5-5]
gi|401257390|gb|EJR63589.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD148]
gi|401633026|gb|EJS50808.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG1O-2]
Length = 705
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VL+ K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CKTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V++AT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAEVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|58337296|ref|YP_193881.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
gi|227903882|ref|ZP_04021687.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
gi|58254613|gb|AAV42850.1| ATP-dependent DNA helicase [Lactobacillus acidophilus NCFM]
gi|227868273|gb|EEJ75694.1| ATP-dependent DNA helicase [Lactobacillus acidophilus ATCC 4796]
Length = 590
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 198/334 (59%), Gaps = 10/334 (2%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N ++L+ +GYDSFR GQ I +VL++++ + V+PTGAGKSLCYQ+PA++ G+TLV+
Sbjct: 2 NPEKVLKQTFGYDSFRPGQKRVIDLVLNRQNVLAVMPTGAGKSLCYQVPALMNSGITLVI 61
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I+ L+S+ E+V +R G IK+++++PER L D+
Sbjct: 62 SPLISLMKDQIDALKQNGINAAALNSATSQEKVNPILRQAYEGKIKLIYITPER-LAMDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
I+LV VDEAHC+S+W H+FRP+Y R+ + + N +LA+TATAT
Sbjct: 121 FRYQLNFLDIALVAVDEAHCISQWGHDFRPAYRRIYEGITSLKSNPN-VLALTATATPAV 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D+ L IP N I + R NL V N Y+ + H H I+
Sbjct: 180 QDDISEQLNIPKKNTIITSFTRPNLSFKVVAFPQNT----PLYIAKYIKLH--PDHAGII 233
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+ + + + ++ YL N+ISV +YH G+ K+R +QE F ++ +V+VAT AFGMG+
Sbjct: 234 YTNTRK-KVEGLTNYLAKNNISVGAYHGGMENKEREDVQEAFQFDRFQVIVATNAFGMGI 292
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLS 520
DK +V VIH S ++E Y QE GRAGRDG S
Sbjct: 293 DKSNVRFVIHASSARNIESYYQEAGRAGRDGEES 326
>gi|340755686|ref|ZP_08692354.1| ATP-dependent DNA helicase RecQ [Fusobacterium sp. D12]
gi|421500527|ref|ZP_15947525.1| ATP-dependent DNA helicase RecQ [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|313686333|gb|EFS23168.1| ATP-dependent DNA helicase RecQ [Fusobacterium sp. D12]
gi|402268149|gb|EJU17534.1| ATP-dependent DNA helicase RecQ [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 591
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 136/329 (41%), Positives = 196/329 (59%), Gaps = 12/329 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+LL+ +YGY++FR GQ + V K + +L TG GKS+CYQIPA++ GLTLV+ PL
Sbjct: 7 KLLQDIYGYENFRKGQKIILDSVFQGKEVLGILTTGGGKSICYQIPALLFEGLTLVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L V + FL+S+ +PEE + + G IK+L+V+PER LN +F+++
Sbjct: 67 ISLMKDQVDALKMVGVKSAFLNSTLKPEEYRRLVGKVIRGEIKILYVTPERLLNENFVTL 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
ISL+ VDEAHC+S+W H+FR SY+ + + + R V+ ILA+TATAT D
Sbjct: 127 MQKIK-ISLLAVDEAHCISQWGHDFRKSYLGIPNFIGKLRQKVQ-ILALTATATPKVQED 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L IP +++ Q + R NL V R AYV + +S I+ S
Sbjct: 185 ILEKLNIPNASIYQGSFNRKNLYFRVE-----RGKVPEAYVADYLK--KSQGEAGIVYCS 237
Query: 430 GKHFETDLISRYLCD-NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ D + YL + SV YH G+ ++R Q F +K++V+VAT AFGMG+DK
Sbjct: 238 TRK-SVDSMYSYLKEIRGYSVGKYHGGMEKQEREESQNNFLQDKLQVMVATNAFGMGIDK 296
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
+V VIH +LP LE Y QE GRAGRDG
Sbjct: 297 SNVRFVIHANLPGDLESYYQEAGRAGRDG 325
>gi|423539895|ref|ZP_17516286.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB4-10]
gi|401173430|gb|EJQ80642.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB4-10]
Length = 705
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VL+ K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPERLDSREFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CKTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V++AT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAEVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|423465493|ref|ZP_17442261.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6O-1]
gi|402417308|gb|EJV49610.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG6O-1]
Length = 705
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VL+ K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPERLDSREFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CKTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V++AT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAEVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|251778058|ref|ZP_04820978.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243082373|gb|EES48263.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 812
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/339 (37%), Positives = 197/339 (58%), Gaps = 15/339 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL YGY SFR GQ I ++D + ++PTG GKS+CYQ+PA+I GLT+V+ PL
Sbjct: 7 ELLEKYYGYKSFRKGQENIISNIIDGNDVLAIMPTGGGKSICYQVPALIFEGLTIVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I+G F++SS E I I+ G K+L+V+PER + +FL++
Sbjct: 67 ISLMKDQVDALKDMGINGEFINSSISSAEENRVIDNIRNGQCKILYVAPERLESLNFLNV 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRA--SLLRARLNVECILAMTATATTTTL 367
+ S +S + +DEAHC+S+W H+FR SY ++ LL+ R I A TATA+
Sbjct: 127 ISECS-VSQIAIDEAHCISQWGHDFRTSYTKVSGFIKLLKTR---PIITAFTATASEEVR 182
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++ L + + R+NL ++V SG ++ +Y+ + ++ S +
Sbjct: 183 EDIIRLLNLNKPKIFITGFDRENLLINVIKSG-----DKKSYLHNYINNNKESSG---VI 234
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ E D I L N S+ YH+G+ DR + QE F ++ ++VAT AFGMG+D
Sbjct: 235 YAATRKEVDKIHEELSHNGFSITKYHAGLSENDRKQNQEDFIYDRSNIMVATNAFGMGID 294
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
K ++ V+HY++P+++E Y QEIGRAGRDG S C L
Sbjct: 295 KPNIRFVVHYNMPKNIEGYYQEIGRAGRDGEKSECILLF 333
>gi|410645734|ref|ZP_11356193.1| ATP-dependent DNA helicase RecQ [Glaciecola agarilytica NO2]
gi|410134829|dbj|GAC04592.1| ATP-dependent DNA helicase RecQ [Glaciecola agarilytica NO2]
Length = 673
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 175/556 (31%), Positives = 273/556 (49%), Gaps = 38/556 (6%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMI 255
++G++ FR GQ + + +L S++ + PTG+GKSLCYQ A+ LP LTLVV PL+ALM
Sbjct: 22 IFGFNQFRTGQQQVVSQLLSGHSSLAIFPTGSGKSLCYQFCAVHLPHLTLVVSPLLALMK 81
Query: 256 DQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS 314
DQL L I + S+ P+E T+ ++ G IK+L VS ERF N F + S
Sbjct: 82 DQLAFLQTKGIPASSIDSTLSPDEQRNTMERVKSGEIKILMVSVERFKNERFRQFIDSVS 141
Query: 315 LISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374
+S++V+DEAHC+SEW HNFRP Y++L +A+LN+ +L +TATAT D+
Sbjct: 142 -VSMLVIDEAHCISEWGHNFRPDYLKLPD--YKAQLNIPLVLLLTATATKKVKLDMAKRF 198
Query: 375 EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434
I +++Q R+NL L+V + Q + S + + Y LQ + +
Sbjct: 199 AIAPEHIVQTGFYRENLDLNVIPT--QEQQKASTLLQLIEQQQGCGIVYVTLQHTAEQ-- 254
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
++ L + K+YH+G+ + R ++Q+ F +VVVAT+AFGMG+DK D+ V
Sbjct: 255 ---VAVGLAAAGVLAKAYHAGLGDEVRQQVQQDFMLGHTQVVVATIAFGMGIDKSDIRFV 311
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVDEYAINKFL 552
+HY LP+S+E Y QEIGRAGRDG+ S C LD + + + +Y D + I L
Sbjct: 312 VHYDLPKSIENYSQEIGRAGRDGQPSRCITLGNLDGLN--TVENFVYGDTPELQGIQIVL 369
Query: 553 CQVFTNGMNSHGKLCSLVKESASRKFDIKEEVML---------------TLLTCLELGEI 597
+ G+ S L K +A FD + EV + TLL LEL I
Sbjct: 370 DDI-RQGIQSRNTQ-PLSKTAADISFDGQWEVQIHGLSTQSNIRQLPLKTLLVQLELMGI 427
Query: 598 ---QYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSI 654
QY +++ + A + + ++ ++ K+ + T+
Sbjct: 428 VRPQYT-YFADVRFKFLQDKADVLGRFDAKRQAFLNSVFDHTDFKKVWGSLNFDTLFEQT 486
Query: 655 GATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVR 714
GA V L L+ I + K Y + D L+ L + SE E +++
Sbjct: 487 GAERSRVVAALEYLEQHQLIELQTKQMTEVYQVNSTAIDQSDLAETLHGYFSEKEQKELQ 546
Query: 715 KLDRMFHAAVFAVDVC 730
++ + F +D C
Sbjct: 547 RIAMLVR--FFQLDKC 560
>gi|430822141|ref|ZP_19440721.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0120]
gi|430864639|ref|ZP_19480464.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1574]
gi|431743578|ref|ZP_19532454.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2071]
gi|430443642|gb|ELA53618.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0120]
gi|430553420|gb|ELA93106.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1574]
gi|430606367|gb|ELB43718.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2071]
Length = 590
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 199/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIIPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 124 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATMQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|229097332|ref|ZP_04228294.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-29]
gi|423442425|ref|ZP_17419331.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4X2-1]
gi|423534838|ref|ZP_17511256.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB2-9]
gi|228686143|gb|EEL40059.1| ATP-dependent DNA helicase RecQ [Bacillus cereus Rock3-29]
gi|402414277|gb|EJV46610.1| ATP-dependent DNA helicase RecQ [Bacillus cereus BAG4X2-1]
gi|402462569|gb|EJV94274.1| ATP-dependent DNA helicase RecQ [Bacillus cereus HuB2-9]
Length = 705
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VL+ K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPERLDSREFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CKTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V++AT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAEVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|187935607|ref|YP_001886536.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum B str.
Eklund 17B]
gi|187723760|gb|ACD24981.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum B str.
Eklund 17B]
Length = 812
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/339 (37%), Positives = 198/339 (58%), Gaps = 15/339 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL YGY SFR GQ I ++D + ++PTG GKS+CYQ+PA+I GLT+V+ PL
Sbjct: 7 ELLEKYYGYKSFRKGQENIISNIIDGNDVLAIMPTGGGKSICYQVPALIFEGLTIVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I+G F++SS E I I+ G K+L+V+PER + +FL++
Sbjct: 67 ISLMKDQVDALKDMGINGEFINSSISSAEENRVIDNIRNGQCKILYVAPERLESLNFLNV 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRA--SLLRARLNVECILAMTATATTTTL 367
+ S +S + +DEAHC+S+W H+FR SY ++ LL+ R I A TATA+
Sbjct: 127 ISECS-VSQIAIDEAHCISQWGHDFRTSYTKVSGFIKLLKTR---PIITAFTATASEEVR 182
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++ L++ + R+NL +++ SG ++ +Y+ + ++ S +
Sbjct: 183 EDIIRLLDLNKPKIFITGFDRENLLINIIKSG-----DKKSYLHNYINNNKESSG---VI 234
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ E D I L N S+ YH+G+ DR + QE F ++ ++VAT AFGMG+D
Sbjct: 235 YAATRKEVDKIHEELSYNGFSITKYHAGLSENDRKQNQEDFIYDRSNIMVATNAFGMGID 294
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
K ++ V+HY++P+++E Y QEIGRAGRDG S C L
Sbjct: 295 KPNIRFVVHYNMPKNIEGYYQEIGRAGRDGEKSECILLF 333
>gi|423616875|ref|ZP_17592709.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD115]
gi|401256899|gb|EJR63104.1| ATP-dependent DNA helicase RecQ [Bacillus cereus VD115]
Length = 705
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VL+ K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CKTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V++AT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|408675008|ref|YP_006874756.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
gi|387856632|gb|AFK04729.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
Length = 715
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 210/335 (62%), Gaps = 12/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYDSFR Q E I+ ++ +K M+++PTG GKS+C+Q+PAM++PG+TLV+ PL+
Sbjct: 6 VLKKYFGYDSFRPLQAEIIETIIAQKDCMVLMPTGGGKSICFQVPAMVMPGITLVISPLI 65
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ++ L I FL+S+ E + G++K+L++SPE+ + ++L F
Sbjct: 66 ALMQDQVQALKSNGIPAAFLNSTLSTIEQRTIEEDCKNGSLKLLYISPEKLFSNNYLG-F 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
T ++ + +DE+HCVS W H+FRP Y++L+A L+ ++A+TATA T +D+
Sbjct: 125 IKTLNVNQIAIDESHCVSTWGHDFRPEYIQLKA--LKDTFPNVPMVALTATADRVTRKDI 182
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
++ L IP + + + R NL L V L G NR V F R+++ I +S
Sbjct: 183 LNQLGIPEALIFISSFDRPNLNLRV-LPGRNRLK-----VIHEFIAKRTNQSGIIYCLSR 236
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K+ T+ ++ L I YH+G+ A+ R+ +Q+ + ++I+V+VAT+AFGMG+DK +
Sbjct: 237 KN--TEDVAEGLRKLGIRAMHYHAGLDAQTRAEVQDAYIKDEIQVIVATIAFGMGIDKSN 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHYSLP ++E + QEIGRAGRDG S LF
Sbjct: 295 VRFVIHYSLPSNVESFYQEIGRAGRDGMKSDTLLF 329
>gi|431195385|ref|ZP_19500363.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1620]
gi|430571763|gb|ELB10637.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1620]
Length = 590
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQSGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 124 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|407705241|ref|YP_006828826.1| lipoprotein [Bacillus thuringiensis MC28]
gi|407382926|gb|AFU13427.1| ATP-dependent DNA helicase RecQ [Bacillus thuringiensis MC28]
Length = 705
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VL+ K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LEI N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CKTLEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +S+ YH+G+ DR+ QELF +++ V++AT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSISKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|169828345|ref|YP_001698503.1| ATP-dependent DNA helicase recQ [Lysinibacillus sphaericus C3-41]
gi|168992833|gb|ACA40373.1| ATP-dependent DNA helicase recQ [Lysinibacillus sphaericus C3-41]
Length = 590
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 198/340 (58%), Gaps = 11/340 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E ++L+ +GY +FR GQ + I+ L +S++ V+PTG GKS+CYQIPA+IL GLT+V
Sbjct: 2 EQARQMLQHHFGYGAFRQGQAQIIEQTLHGQSSLCVMPTGGGKSICYQIPALILEGLTIV 61
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL++LM DQ+ L I +++S+ +EV ET++L G +K+L+++PER +A
Sbjct: 62 ISPLISLMQDQVEALRAANIPAAYINSTLTAQEVNETMQLASAGYLKLLYIAPERLESAS 121
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
FL + S + L+ VDEAHC+S+W H+FRPSY ++ L +LA+TATAT
Sbjct: 122 FLQALSYLS-VPLIAVDEAHCISQWGHDFRPSYRSIQ-KLFTLWPQKPTVLALTATATPA 179
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D+ L I + + RDNL LSV L G N++ Y+ + +K
Sbjct: 180 VCEDIRHLLNIDENATVMTGFTRDNLALSV-LIGENKERYIKNYL-------QKNKQEVG 231
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ + D I L +V YH+G+ + R QE F ++ R++VAT AFGMG
Sbjct: 232 IIYAATRKAVDAIYDMLSRTGEAVAKYHAGLSEELRMAEQERFLKDEARIMVATNAFGMG 291
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+DK +V V+HY +P ++E Y QE GRAGRDG S C L
Sbjct: 292 IDKSNVRFVLHYQMPRNMESYYQEAGRAGRDGLPSACILL 331
>gi|42519100|ref|NP_965030.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii NCC 533]
gi|41583387|gb|AAS08996.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii NCC 533]
Length = 598
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 199/329 (60%), Gaps = 14/329 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY +FR GQ I+ VL ++ + V+PTGAGKS+CYQIPA++ PG+TLV+ PL+
Sbjct: 7 VLKNVFGYTTFRPGQERVIEQVLKGRNVLAVMPTGAGKSMCYQIPALVNPGVTLVISPLI 66
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I+ L+S+ EEV +R G IK+L+++PER L D+
Sbjct: 67 SLMKDQIDSLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLLYITPER-LAMDYFRYQ 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATTTTLR 368
ISLV VDEAHC+S+W H+FRP+Y ++ + ++++ N ILA+TATAT + +
Sbjct: 126 LNFLDISLVAVDEAHCISQWGHDFRPAYRQIMEGVKSIKSQPN---ILALTATATPSVQK 182
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+ L IP N + + R NL V +N +N +D + S Y
Sbjct: 183 DIADQLNIPAENYVITSFARPNLSFKVV---DNPKNTNLYLLDYIKKHPNQSGIVY---- 235
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + ++ YL N I SYH+G+ K+R+ +Q+ F +K++V+VAT AFGMG+DK
Sbjct: 236 ASTRKNVEELTDYLAQNGILTASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDK 295
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
R+V VIH + +LE Y QE GRAGRDG
Sbjct: 296 RNVRFVIHANSTPNLESYYQEAGRAGRDG 324
>gi|385825920|ref|YP_005862262.1| ATP-dependent DNA helicase [Lactobacillus johnsonii DPC 6026]
gi|329667364|gb|AEB93312.1| ATP-dependent DNA helicase [Lactobacillus johnsonii DPC 6026]
Length = 598
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 199/329 (60%), Gaps = 14/329 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY +FR GQ I+ VL ++ + V+PTGAGKS+CYQIPA++ PG+TLV+ PL+
Sbjct: 7 VLKNVFGYTTFRPGQERVIEQVLKGRNVLAVMPTGAGKSMCYQIPALVNPGVTLVISPLI 66
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I+ L+S+ EEV +R G IK+L+++PER L D+
Sbjct: 67 SLMKDQIDSLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLLYITPER-LAMDYFRYQ 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATTTTLR 368
ISLV VDEAHC+S+W H+FRP+Y ++ + ++++ N ILA+TATAT + +
Sbjct: 126 LNFLDISLVAVDEAHCISQWGHDFRPAYRQIMEGVKSIKSQPN---ILALTATATPSVQK 182
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+ L IP N + + R NL V +N +N +D + S Y
Sbjct: 183 DIADQLNIPAENYVITSFARPNLSFKVV---DNPKNTNLYLLDYIKKHPNQSGIVY---- 235
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + ++ YL N I SYH+G+ K+R+ +Q+ F +K++V+VAT AFGMG+DK
Sbjct: 236 ASTRKNVEELTDYLAQNGILTASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDK 295
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
R+V VIH + +LE Y QE GRAGRDG
Sbjct: 296 RNVRFVIHANSTPNLESYYQEAGRAGRDG 324
>gi|126651800|ref|ZP_01724002.1| ATP-dependent DNA helicase (RecQ) [Bacillus sp. B14905]
gi|126591478|gb|EAZ85585.1| ATP-dependent DNA helicase (RecQ) [Bacillus sp. B14905]
Length = 590
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 198/340 (58%), Gaps = 11/340 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E ++L+ +GY++FR GQ + I+ L +S++ V+PTG GKS+CYQIPA++L GLT+V
Sbjct: 2 EQARQMLQHHFGYEAFRQGQAQIIEQTLHGQSSLCVMPTGGGKSICYQIPALMLEGLTIV 61
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL++LM DQ+ L I +++S+ +EV ET++L G +K+L+++PER +A
Sbjct: 62 ISPLISLMQDQVEALRAANIPAAYINSTLTAQEVNETMQLASAGYLKLLYIAPERLESAS 121
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
FL + S + L+ VDEAHC+S+W H+FRPSY ++ L +LA+TATAT
Sbjct: 122 FLQALSYLS-VPLIAVDEAHCISQWGHDFRPSYRSIQ-KLFTLWKQKPTVLALTATATPA 179
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D+ L I + RDNL LSV L G N++ Y+ + +K
Sbjct: 180 VCEDIRKILTIDEDATVMTGFTRDNLALSV-LIGENKERYIKNYL-------QKNKQEVG 231
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ + D I L + +V YH+G+ R QE F ++ R++VAT AFGMG
Sbjct: 232 IIYAATRKAVDAIYDMLSRSGEAVAKYHAGLSEDLRMAEQERFLKDEARIMVATNAFGMG 291
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+DK +V V+HY +P ++E Y QE GRAGRDG S C L
Sbjct: 292 IDKSNVRFVLHYQMPRNMESYYQEAGRAGRDGLPSACILL 331
>gi|345315005|ref|XP_001511083.2| PREDICTED: probable ATP-dependent DNA helicase recQ-like, partial
[Ornithorhynchus anatinus]
Length = 328
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 198/332 (59%), Gaps = 12/332 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY FR GQ E + VL +S + PTG+GKSLCYQ+ A++LP LTLVV PL+A
Sbjct: 5 LQQVFGYPHFRLGQEETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVSPLLA 64
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I G + S+Q +E + + + G +K+L +S ER N F +
Sbjct: 65 LMQDQLGFLQRHGISAGSIDSAQSRDEANDVMARARSGELKILMISVERLKNERFRNFLN 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+VVDEAHC+SEW HNFRP Y++L + + N+ L +TATAT + D+
Sbjct: 125 SVQ-ISLLVVDEAHCISEWGHNFRPDYLKLPD--YQRQFNIPQALLLTATATPQVIADMQ 181
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ I +++ R NL L V +SG++++ ++ ++ S Y LQ +
Sbjct: 182 AKFAIAAEDVVTTGFYRPNLNLLVEPVSGHDKRRRLLEWMKA--RANQPSIVYVTLQKTA 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ IS +L + I ++YH+G+P + R IQ+ F + +VAT+AFGMG+DK D
Sbjct: 240 EQ-----ISEHLNRHGIQAEAYHAGLPHEKREGIQQRFMGGRSNCIVATIAFGMGIDKSD 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+ V+H+ LP+S+E Y QEIGRAGRDG+ S C
Sbjct: 295 IRNVVHFDLPKSIENYSQEIGRAGRDGQPSDC 326
>gi|417837551|ref|ZP_12483789.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii pf01]
gi|338761094|gb|EGP12363.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii pf01]
Length = 598
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 199/329 (60%), Gaps = 14/329 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY +FR GQ I+ VL ++ + V+PTGAGKS+CYQIPA++ PG+TLV+ PL+
Sbjct: 7 VLKNVFGYTTFRPGQERVIEQVLKGRNVLAVMPTGAGKSMCYQIPALVNPGVTLVISPLI 66
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I+ L+S+ EEV +R G IK+L+++PER L D+
Sbjct: 67 SLMKDQIDSLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLLYITPER-LAMDYFRYQ 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATTTTLR 368
ISLV VDEAHC+S+W H+FRP+Y ++ + ++++ N ILA+TATAT + +
Sbjct: 126 LNFLDISLVAVDEAHCISQWGHDFRPAYRQIMEGVKSIKSQPN---ILALTATATPSVQK 182
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+ L IP N + + R NL V +N +N +D + S Y
Sbjct: 183 DIADQLNIPAENYVITSFARPNLSFKVV---DNPKNTNLYLLDYIKKHPNQSGIVY---- 235
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + ++ YL N I SYH+G+ K+R+ +Q+ F +K++V+VAT AFGMG+DK
Sbjct: 236 ASTRKNVEELTDYLAQNGILTASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDK 295
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
R+V VIH + +LE Y QE GRAGRDG
Sbjct: 296 RNVRFVIHANSTPNLESYYQEAGRAGRDG 324
>gi|403515110|ref|YP_006655930.1| ATP-dependent DNA helicase RecQ [Lactobacillus helveticus R0052]
gi|403080548|gb|AFR22126.1| ATP-dependent DNA helicase RecQ [Lactobacillus helveticus R0052]
Length = 590
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 136/336 (40%), Positives = 200/336 (59%), Gaps = 14/336 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N ++L+ +GY SFR GQ + I ++L++K+ + V+PTGAGKSLCYQ+PA++ G+TLV+
Sbjct: 2 NPEKILKQTFGYSSFRPGQKKVIDLILNRKNVLAVMPTGAGKSLCYQVPALMNEGVTLVI 61
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I+ L+S+ EEV +R G IK+++++PER L D+
Sbjct: 62 SPLISLMKDQIDSLKQNGINAAALNSTTPQEEVNPILRQAYEGKIKLIYITPER-LAMDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
+ LV VDEAHC+S+W H+FRP+Y ++ + L+++ ILA+TATAT
Sbjct: 121 FRYQLNFLDVDLVAVDEAHCISQWGHDFRPAYRQIFEGINSLKSK---PTILALTATATP 177
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L IP N I + R N+ V S N Q Y+ + H
Sbjct: 178 AVQDDIGQQLNIPQENFIVTSFARPNISFKVVNSPQNTQ----LYIAQYIKAHPDDAGI- 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I + K E+ ++ YL ISV +YH G+ AK+RS+IQE F ++ +V+VAT AFGM
Sbjct: 233 IYTNTRKKVES--LTDYLAKKGISVGAYHGGMDAKERSQIQEAFQFDEFQVIVATNAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLS 520
G+DK +V V+H S ++E Y QE GRAGRDG S
Sbjct: 291 GIDKSNVRFVVHASSARNIESYYQEAGRAGRDGEES 326
>gi|343495049|ref|ZP_08733255.1| ATP-dependent DNA helicase recQ [Vibrio nigripulchritudo ATCC
27043]
gi|342824090|gb|EGU58661.1| ATP-dependent DNA helicase recQ [Vibrio nigripulchritudo ATCC
27043]
Length = 594
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 187/600 (31%), Positives = 283/600 (47%), Gaps = 64/600 (10%)
Query: 230 SLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQV 288
SLCYQ+PA+ LP LTLV+ PL+AL+ DQL+ L + + S+Q E ++ ++
Sbjct: 1 SLCYQLPALHLPHLTLVISPLLALIKDQLQFLKSKGLAAESIDSTQDRETSQRIMQSVRN 60
Query: 289 GAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRA 348
GA K+L +S ER N F F + IS++VVDEAHC+SEW HNFRP Y++L +
Sbjct: 61 GATKILMISVERLKNERFRQ-FISQVPISMLVVDEAHCISEWGHNFRPDYLKLPQ--YQK 117
Query: 349 RLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSA 408
LN+ +L +TATAT + D+ S I ++ R NL+L + Q+ER
Sbjct: 118 SLNIPQVLLLTATATPKVIEDMQSKFNIQREHITVTGFYRSNLRLDIQPC---LQSER-- 172
Query: 409 YVDEVFSFHRSSKH-----YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSR 463
+D++ S RS Y LQ S + ++ YL + I+ +YH+G+ ++DR
Sbjct: 173 -LDKLTSILRSQPDSPTIVYVTLQNSAEQ-----VASYLREYGINALAYHAGLKSEDREH 226
Query: 464 IQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCH 523
IQ F + + +VAT+AFGMG+DK D+ VIH+ LP+S+E Y QEIGRAGRDG+ S C
Sbjct: 227 IQHDFMTGAVPCIVATIAFGMGVDKSDIRRVIHFDLPKSIENYSQEIGRAGRDGQHSDCI 286
Query: 524 LFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEE 583
L D L + +Y D D +I + Q++ +G L L KES R+ +K
Sbjct: 287 LLGDKSGLTVLENFVYGDTPDANSIQLVIEQIYQSGSEWSIMLNRLSKESNIRQLPLK-- 344
Query: 584 VMLTLLTCLEL-GEIQ-YLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQG 641
TLL LEL G I+ + + + + ++ + V I + S +
Sbjct: 345 ---TLLVYLELQGVIEPRFSYFADYRFKLNMEQQQICARFQGERKQFVEAIFQCSPKAKT 401
Query: 642 QYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHL 701
+ D + A V + L G I E K Y ++ S L+ +
Sbjct: 402 WHTLDFDALWQGYSAERSRVVSALDYFHENGWIELESKQATDVYRVLNTQSAPNELAHQM 461
Query: 702 TKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDV 761
+ E +V ++ M A F + CL + YF D+N
Sbjct: 462 HSLFEQKELSEVERIRTM--VAFFE--------------ESRCLSYQLASYF-ADENA-- 502
Query: 762 PNKIGQSS---------------PFLRADIKVFLQSNLNA---KFTPRAVARILHGIASP 803
P + G S P +I+ ++ L A TP+A+AR L GIA+P
Sbjct: 503 PTECGHCSVCEGRVAQLPGAEPVPVDSTNIEHWIAPYLKATRGSATPQALARFLCGIATP 562
>gi|257896094|ref|ZP_05675747.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Com12]
gi|257832659|gb|EEV59080.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Com12]
Length = 655
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 206/351 (58%), Gaps = 13/351 (3%)
Query: 168 SELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGA 227
++L E + R+ + N LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+
Sbjct: 38 ADLSFGENRSKMARERSGKMN--DLLKQYFGYDKFRPGQKEIIQKVIDQENVLGIMPTGS 95
Query: 228 GKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI 286
GKS+CYQ+P+++L GLT+VV PL++LM DQ+ + I F++SS E A + I
Sbjct: 96 GKSICYQLPSLLLDGLTVVVSPLISLMKDQVDAANQLGIPATFINSSLDDYETARRFQEI 155
Query: 287 QVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLL 346
++L+++PERF+ DF+ + + ++ +DEAHC+S+W H+FRPSY+++ A L
Sbjct: 156 DRQQYRLLYIAPERFIMPDFIQAMNRWN-VCMIAIDEAHCISQWGHDFRPSYLQM-AKQL 213
Query: 347 RARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNER 406
N I+A+TATAT D+ L+IP N IQ R+NL+ V + ++
Sbjct: 214 NQLPNRPVIVALTATATIQVAADIKRLLKIPDGNHIQTGFERENLRFQVV-----KDQKK 268
Query: 407 SAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQE 466
Y+ E +++ + + E D I L S+ YH G+ +R+ +QE
Sbjct: 269 EQYLVEYLKINKNQSG---IIYAATRKEVDRIYHLLKKFGFSIGRYHGGLNENERTAMQE 325
Query: 467 LFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
F ++++++VAT AFGMG++K +V VIHY +P SLE Y QE GRAGRDG
Sbjct: 326 AFLYDRLQLIVATNAFGMGINKSNVRFVIHYQIPGSLEAYYQEAGRAGRDG 376
>gi|227551284|ref|ZP_03981333.1| ATP-dependent helicase [Enterococcus faecium TX1330]
gi|227179564|gb|EEI60536.1| ATP-dependent helicase [Enterococcus faecium TX1330]
Length = 653
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 206/351 (58%), Gaps = 13/351 (3%)
Query: 168 SELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGA 227
++L E + R+ + N LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+
Sbjct: 36 ADLSFGENRSKMARERSGKMN--DLLKQYFGYDKFRPGQKEIIQKVIDQENVLGIMPTGS 93
Query: 228 GKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI 286
GKS+CYQ+P+++L GLT+VV PL++LM DQ+ + I F++SS E A + I
Sbjct: 94 GKSICYQLPSLLLDGLTVVVSPLISLMKDQVDAANQLGIPATFINSSLDDYETARRFQEI 153
Query: 287 QVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLL 346
++L+++PERF+ DF+ + + ++ +DEAHC+S+W H+FRPSY+++ A L
Sbjct: 154 DRQQYRLLYIAPERFIMPDFIQAMNRWN-VCMIAIDEAHCISQWGHDFRPSYLQM-AKQL 211
Query: 347 RARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNER 406
N I+A+TATAT D+ L+IP N IQ R+NL+ V + ++
Sbjct: 212 NQLPNRPVIVALTATATIQVAADIKRLLKIPDGNHIQTGFERENLRFQVV-----KDQKK 266
Query: 407 SAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQE 466
Y+ E +++ + + E D I L S+ YH G+ +R+ +QE
Sbjct: 267 EQYLVEYLKINKNQSG---IIYAATRKEVDRIYHLLKKFGFSIGRYHGGLNENERTAMQE 323
Query: 467 LFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
F ++++++VAT AFGMG++K +V VIHY +P SLE Y QE GRAGRDG
Sbjct: 324 AFLYDRLQLIVATNAFGMGINKSNVRFVIHYQIPGSLEAYYQEAGRAGRDG 374
>gi|268319487|ref|YP_003293143.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii FI9785]
gi|262397862|emb|CAX66876.1| ATP-dependent DNA helicase RecQ [Lactobacillus johnsonii FI9785]
Length = 598
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 200/329 (60%), Gaps = 14/329 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY +FR GQ I+ VL ++ + V+PTGAGKS+CYQ+PA++ PG+TLV+ PL+
Sbjct: 7 VLKNVFGYTTFRPGQERVIEQVLKGRNVLAVMPTGAGKSMCYQVPALVNPGVTLVISPLI 66
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I+ L+S+ EEV +R G IK+L+++PER L D+
Sbjct: 67 SLMKDQIDSLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLLYITPER-LAMDYFRYQ 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATTTTLR 368
ISLV VDEAHC+S+W H+FRP+Y ++ + ++++ N ILA+TATAT + +
Sbjct: 126 LNFLNISLVAVDEAHCISQWGHDFRPAYRQIMEGVKSIKSQPN---ILALTATATPSVQK 182
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+ L+IP N + + R NL V +N +N +D + S Y
Sbjct: 183 DIADQLKIPAENYVITSFARPNLSFKVV---DNPKNTNLYLLDYIKKHPNQSGIVY---- 235
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + ++ YL N I SYH+G+ K+R+ +Q+ F +K++V+VAT AFGMG+DK
Sbjct: 236 ASTRKNVEELTDYLAQNGILTASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDK 295
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
R+V VIH + +LE Y QE GRAGRDG
Sbjct: 296 RNVRFVIHANSTPNLESYYQEAGRAGRDG 324
>gi|312977401|ref|ZP_07789149.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus CTV-05]
gi|423321639|ref|ZP_17299510.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus FB077-07]
gi|310895832|gb|EFQ44898.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus CTV-05]
gi|405593760|gb|EKB67200.1| ATP-dependent DNA helicase RecQ [Lactobacillus crispatus FB077-07]
Length = 589
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 147/364 (40%), Positives = 213/364 (58%), Gaps = 17/364 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N +L+ +GY +FR GQ + I +VL K++ + V+PTG GKS+CYQIPA+I G+TLV+
Sbjct: 2 NPEEVLKDTFGYTNFRPGQKQVIDLVLKKQNVLAVMPTGGGKSMCYQIPALINSGVTLVI 61
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ +L I+ L+S+ EEV +R G IK+++++PER L D+
Sbjct: 62 SPLISLMKDQIDNLKQNGINAAALNSTTPQEEVNPILRQAYEGKIKLIYITPER-LAIDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
I LV VDEAHC+S+W H+FRP+Y +L + L++R N ILA+TATAT
Sbjct: 121 FRYQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQLLDGINSLKSRPN---ILALTATATP 177
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L IP N+I + R N+ V N+ QN Y+ E H+ K
Sbjct: 178 AVQDDICEQLNIPKENMIVTSFARPNISFKVV---NSPQNT-PLYISEYIKAHQD-KAGI 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I + K E+ ++ YL ISV +YH G+ + +RS++QE F ++ +V+VAT AFGM
Sbjct: 233 IYTNTRKKVES--LTDYLAKKGISVGAYHGGMDSSERSQVQEAFQFDEFQVIVATNAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDG 542
G+DK +V VIH S ++E Y QE GRAGRDG S L D+ +R + SD
Sbjct: 291 GIDKSNVRFVIHASSARNMESYYQEAGRAGRDGEESKAILIYHPGDLRQYRY-FIDESDA 349
Query: 543 VDEY 546
D+Y
Sbjct: 350 DDKY 353
>gi|410455550|ref|ZP_11309427.1| ATP-dependent DNA helicase RecQ [Bacillus bataviensis LMG 21833]
gi|409929031|gb|EKN66121.1| ATP-dependent DNA helicase RecQ [Bacillus bataviensis LMG 21833]
Length = 709
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 136/334 (40%), Positives = 201/334 (60%), Gaps = 15/334 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY +FR+GQ +AI+ VL +++T+ V+PTG GKS+CYQIPA++LPG T+V+ PL+
Sbjct: 8 LLESHFGYSTFRNGQEQAIRSVLAQENTICVMPTGGGKSICYQIPALVLPGTTIVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L V I F++SS E + I + G K+L+++PER + +F+
Sbjct: 68 SLMKDQVDALIQVGIPATFINSSLSYSEANKRIYEAKQGKYKLLYIAPERLESYEFVEDL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATTTTLR 368
+ I LV VDEAHC+S+W H+FRPSY ++ + L R NV LA+TATAT
Sbjct: 128 RSME-IPLVAVDEAHCISQWGHDFRPSYRHIQQMVNNLPQRPNV---LALTATATPKVRE 183
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+ L I N I R+NL +V + G +RQ Y+ ++ + I+
Sbjct: 184 DICHLLNIDERNTIITGFERENLSFAV-IKGQDRQKFLKDYL------KKNEQEAGIIYA 236
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + D + L +I+V YH+G+ DR+R QE F +K V+VAT AFGMG+DK
Sbjct: 237 ATRK-NVDQLYEKLRKENINVARYHAGMGDADRAREQERFLEDKASVMVATSAFGMGIDK 295
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
++ V+HY +P+++E Y QE GRAGRDG S C
Sbjct: 296 SNIRYVVHYQMPKNMESYYQEAGRAGRDGLESEC 329
>gi|163754961|ref|ZP_02162082.1| ATP-dependent DNA helicase recQ [Kordia algicida OT-1]
gi|161325028|gb|EDP96356.1| ATP-dependent DNA helicase recQ [Kordia algicida OT-1]
Length = 700
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 140/364 (38%), Positives = 209/364 (57%), Gaps = 14/364 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
L L+ +GYD+FR Q E I + K ++++PTG GKS+C+Q+PA++L GLT+V+
Sbjct: 7 LKNTLKEYFGYDTFRPLQEEIINSIFSGKDNLVIMPTGGGKSICFQLPAILLEGLTIVIS 66
Query: 249 PLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL+ALM DQ+ L I +L+SSQ E I G IK+L+ +PE +L
Sbjct: 67 PLIALMKDQVDGLTTNGIAAAYLNSSQTEIEQQAIYSEIDAGKIKLLYTAPESL---SYL 123
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ ISL+ +DEAHC+S W H+FRP+Y L L+ R ++A+TATA T
Sbjct: 124 EHIFSSQKISLIAIDEAHCISSWGHDFRPAYTNL--GYLKKRFPSIPVIALTATADKATR 181
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ + L IP + + R NL+L V N+R + +++DE R ++ I
Sbjct: 182 EDIANQLNIPHAKQHIASFDRKNLKLEVR-PANDRVKQIISFIDE-----RPTESGIIYC 235
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+S K ET ++ L + +I+ +YH+GI RS+IQE F ++ +V+ AT+AFGMG+D
Sbjct: 236 LSRKATET--VAEKLQNANINAIAYHAGIAHTKRSKIQEDFINDTCQVICATIAFGMGID 293
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K +V VIHY+LP+++E Y QEIGRAGRDG S LF +L+ S G E
Sbjct: 294 KSNVRWVIHYNLPKNIEGYYQEIGRAGRDGLPSNTLLFHSYADVIQLKKFAESSGNVEVQ 353
Query: 548 INKF 551
+ K
Sbjct: 354 LAKL 357
>gi|338999364|ref|ZP_08638013.1| ATP-dependent DNA helicase RecQ [Halomonas sp. TD01]
gi|338763771|gb|EGP18754.1| ATP-dependent DNA helicase RecQ [Halomonas sp. TD01]
Length = 680
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 185/587 (31%), Positives = 279/587 (47%), Gaps = 50/587 (8%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+D FR GQ + VLD ST + TGAGKSLCYQ+PA+ LP LTLVV PL+A
Sbjct: 10 LKTVFGFDDFRGGQQAVVSRVLDGHSTAAIFATGAGKSLCYQLPALHLPHLTLVVSPLLA 69
Query: 253 LMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
LM DQL L HG + S+Q + + + G +K+L VS ER N F
Sbjct: 70 LMQDQLAFL--ARHGVAAASIDSTQDRATTRDVMERAKNGELKILMVSVERLKNERFRH- 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F ISL+VVDEAHC+SEW HNFRP Y++L + + +L +TATAT + D
Sbjct: 127 FLRQVQISLLVVDEAHCLSEWGHNFRPDYLKLPD--YQRDFAIPQVLLLTATATPAVIAD 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH--YYILQ 427
+ I N+I R NL+L V+ + NRQ + ++ + Y LQ
Sbjct: 185 MREKFSIVPKNVITTGFYRANLELLVAPAMENRQQQLIDWLKPQMPPGNEAPTIIYVTLQ 244
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + ++ L + I+ ++YH+G+ + R IQ F S + +VAT+AFGMG+D
Sbjct: 245 QTAEQ-----VANALAAHGIAAQAYHAGLDSVRRDEIQRQFMSGESPCIVATIAFGMGID 299
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYA 547
K ++ V+H+ LP+S+E Y QEIGRAGRDG S C L + +Y D +
Sbjct: 300 KGNIRNVVHFDLPKSIENYSQEIGRAGRDGLPSTCLTIAGRDGLRVLENFVYGDTPEYVG 359
Query: 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI--QYLQLLPE 605
I + L ++ + G + + ++ + SR +I+ + TLL LE+ I L E
Sbjct: 360 ILRLLEEISSAG-QAQDRQWEVLLNTLSRDTNIRLLPLKTLLVRLEMHGIIAPRFAFLAE 418
Query: 606 LKVTCTLNFHKTTPTLL-----ADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTID 660
+ L +H PT L ++ V ++ + D + + A ID
Sbjct: 419 YR----LRYH-IEPTALVGRFEGERAAFVRLLIDNIAIARTWGTVDFERLHQAGQAQQID 473
Query: 661 VS-----NQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRK 715
S L + +G +T E K Y I + AL++ L E ++ +
Sbjct: 474 ASRARVITALEYFQDKGWLTLEGKRMTDVYEICQPGFSVEALASQLFNECLHREQIEIER 533
Query: 716 LDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVP 762
L M A+F + CL + + ++F GD D P
Sbjct: 534 LHSML--ALFESE--------------SCLTRRLAEHF-GDTTFDGP 563
>gi|30262788|ref|NP_845165.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Ames]
gi|47528112|ref|YP_019461.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. 'Ames
Ancestor']
gi|49185634|ref|YP_028886.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Sterne]
gi|65320112|ref|ZP_00393071.1| COG0514: Superfamily II DNA helicase [Bacillus anthracis str.
A2012]
gi|170704762|ref|ZP_02895228.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0389]
gi|229603340|ref|YP_002867093.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0248]
gi|30257420|gb|AAP26651.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Ames]
gi|47503260|gb|AAT31936.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. 'Ames
Ancestor']
gi|49179561|gb|AAT54937.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. Sterne]
gi|170130563|gb|EDS99424.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0389]
gi|229267748|gb|ACQ49385.1| ATP-dependent DNA helicase RecQ [Bacillus anthracis str. A0248]
Length = 705
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+ +V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLFYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEEPLVLALTATATPQVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L I N I R+NL SV + G +R + Y+ ++ K I+ +
Sbjct: 186 CNTLGINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI------RQNQKESGIIYAAT 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ DR+ QELF +++ V+VAT AFGMG+DK +
Sbjct: 239 RKV-VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSACILL 332
>gi|296330478|ref|ZP_06872957.1| putative ATP-dependent nucleic acid helicase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305674736|ref|YP_003866408.1| ATP-dependent nucleic acid helicase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296152375|gb|EFG93245.1| putative ATP-dependent nucleic acid helicase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305412980|gb|ADM38099.1| putative ATP-dependent nucleic acid helicase [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 591
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 198/337 (58%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ R GQ EAI+ V + +++T ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKLRSGQEEAIRSVTEARQNTACIMPTGGGKSICYQIPALMFEGATIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ +++S+Q +E+ E + ++ GA K+ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ + LV +DEAHC+S+W H+FRPSY + L R + I+A+TATAT D
Sbjct: 128 LQSID-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFRELHDKPVIMALTATATPEVHED 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + RDNL V+ G N+ ++D+ + ++++H + +
Sbjct: 186 ICKQLHIQKENTVHTGFSRDNLTFKVA-KGENKDR----FIDD---YVQNNRHEAGIVYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D I L N IS YH G+ R QE F +++++V+VAT AFGMG+DK
Sbjct: 238 ATRKEADRIYERLKRNQISAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLF 334
>gi|253576641|ref|ZP_04853969.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844055|gb|EES72075.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. oral taxon 786
str. D14]
Length = 610
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 137/341 (40%), Positives = 201/341 (58%), Gaps = 11/341 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E+ +LL+ YGY FR+GQ ++ VL T+ ++PTG GKS+CYQIPA++LPGLTLV
Sbjct: 9 EHAQQLLQKYYGYPDFREGQRRIVESVLSGADTLGIMPTGGGKSICYQIPALMLPGLTLV 68
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL++LM DQ+ L + I +++S+ +EV + IR + G +K+L+V+PER L D
Sbjct: 69 VSPLISLMKDQVDALTAMGISAAYINSTLSGKEVNDRIRAARRGELKLLYVAPER-LELD 127
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
+ + IS V VDEAHCVS+W H+FR SY+ + + + + + A TATAT
Sbjct: 128 WFREEMSGLSISCVAVDEAHCVSQWGHDFRTSYLAV-SPFVESLPQRPILAAFTATATPE 186
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D++ L + + RDNL +SV L G N++ + V ++ + H
Sbjct: 187 VMDDMVRLLRLANPAVFVTGLGRDNLAMSV-LRGENKR-------EFVLNYATTHAHQPG 238
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ + E D + L I YH+G+ K+R QE F + IRV+VAT AFGMG
Sbjct: 239 IVYAATRKEVDDLYERLRRAGIPAGRYHAGLSDKEREESQEAFLYDDIRVMVATNAFGMG 298
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+DK +V VIHY++P+++E YVQE GRAGRDG S C L
Sbjct: 299 IDKSNVRYVIHYNMPKNMEAYVQEAGRAGRDGEPSECILLF 339
>gi|385813904|ref|YP_005850297.1| ATP-dependent DNA helicase RecQ [Lactobacillus helveticus H10]
gi|323466623|gb|ADX70310.1| ATP-dependent DNA helicase RecQ [Lactobacillus helveticus H10]
Length = 599
Score = 238 bits (608), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 136/336 (40%), Positives = 200/336 (59%), Gaps = 14/336 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N ++L+ +GY SFR GQ + I ++L++K+ + V+PTGAGKSLCYQ+PA++ G+TLV+
Sbjct: 11 NPEKILKQTFGYSSFRPGQKKVIDLILNRKNVLAVMPTGAGKSLCYQVPALMNEGVTLVI 70
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I+ L+S+ EEV +R G IK+++++PER L D+
Sbjct: 71 SPLISLMKDQIDSLKQNGINAAALNSTTPQEEVNPILRQAYEGKIKLIYITPER-LAMDY 129
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
+ LV VDEAHC+S+W H+FRP+Y ++ + L+++ ILA+TATAT
Sbjct: 130 FRYQLNFLDVDLVAVDEAHCISQWGHDFRPAYRQIFEGINSLKSK---PTILALTATATP 186
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L IP N I + R N+ V S N Q Y+ + H
Sbjct: 187 AVQDDIGQQLNIPQENFIITSFARPNISFKVVNSPQNTQ----LYIAQYIKAHPDDAGI- 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I + K E+ ++ YL ISV +YH G+ AK+RS+IQE F ++ +V+VAT AFGM
Sbjct: 242 IYTNTRKKVES--LTDYLAKKGISVGAYHGGMDAKERSQIQEAFQFDEFQVIVATNAFGM 299
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLS 520
G+DK +V V+H S ++E Y QE GRAGRDG S
Sbjct: 300 GIDKSNVRFVVHASSARNIESYYQEAGRAGRDGEES 335
>gi|345022486|ref|ZP_08786099.1| ATP-dependent DNA helicase [Ornithinibacillus scapharcae TW25]
Length = 714
Score = 238 bits (608), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 197/337 (58%), Gaps = 11/337 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GY+SFR GQ E I V+ +T+ V+PTG GKS+CYQIP + + G +++ PL
Sbjct: 7 KVLKTYFGYESFRPGQKEVIDRVVHSTNTLAVMPTGGGKSICYQIPGLTMEGTAIIISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I F++SS PEE ++ I G K ++V+PERF + F+ +
Sbjct: 67 ISLMKDQVDSLLALGIPATFINSSLTPEEHENRMQEIANGRFKFVYVAPERFESTGFIRV 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
I+LV DEAHC+S+W H+FRPSY + +L + N+ ++A+TATAT + D
Sbjct: 127 VRKIK-IALVAFDEAHCISQWGHDFRPSYRSIVPNLNQIG-NIPVVMALTATATEEVISD 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I +N+I RDNL + + G +R + A+++E + + I +
Sbjct: 185 IQELLHIENNNVINTGFARDNLAFHI-VKGKDRSSYIRAFLEE-----HTDESGIIYTAT 238
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K + D + L I V YH+G+ + R + Q F ++ V++AT AFGMG+DK
Sbjct: 239 RK--QADALFDQLSSRGIEVAKYHAGMSEQARKQAQAAFIHDQKHVMIATNAFGMGIDKS 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+V VIHY++P ++E Y QE GRAGRDG S C L
Sbjct: 297 NVRYVIHYAMPMNIESYYQEAGRAGRDGEFSDCILLF 333
>gi|386758677|ref|YP_006231893.1| ATP-dependent DNA helicase RecQ [Bacillus sp. JS]
gi|384931959|gb|AFI28637.1| ATP-dependent DNA helicase RecQ [Bacillus sp. JS]
Length = 591
Score = 238 bits (608), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 198/337 (58%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ FR GQ EAI++V + +++T ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ +++S+Q +E+ E + ++ GA K+ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ LV +DEAHC+S+W H+FRPSY + L R + I+A+TATAT D
Sbjct: 128 LQGID-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFRELHDKPVIMALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + R+NL V + G N+ ++DE + ++++H + +
Sbjct: 186 ICKQLHIQKENTVYTGFSRENLTFKV-VKGENKDR----FIDE---YVQNNRHEAGIVYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D I L N I YH G+ R QE F +++++V+VAT AFGMG+DK
Sbjct: 238 ATRKEADRIYERLKRNQIRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLF 334
>gi|333373944|ref|ZP_08465838.1| ATP-dependent helicase RecQ [Desmospora sp. 8437]
gi|332968696|gb|EGK07748.1| ATP-dependent helicase RecQ [Desmospora sp. 8437]
Length = 712
Score = 238 bits (608), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 194/337 (57%), Gaps = 11/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL YGY SFR GQ I +LD +T ++PTG GKS+CYQIPA+++ GLTLVV PL+
Sbjct: 8 LLERYYGYSSFRPGQEWIIGSILDGHNTFAIMPTGGGKSICYQIPALMMEGLTLVVSPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ HL + I +++S+ EE+ + +R GA K+++++PER + F S+
Sbjct: 68 SLMKDQVDHLNQLGIPAAYINSTLSFEEMQQHLRDASRGAYKLVYIAPERLESPRFQSLL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L SLV VDEAHC+S+W H+FRPSY + A LR + I A TATAT D+
Sbjct: 128 REVPL-SLVTVDEAHCISQWGHDFRPSYRSI-AHWLRELPHRPVIAAFTATATREVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP + + R NL SV L G N ++ ++ E H +
Sbjct: 186 ARLLSIPPNRVFATGLERKNLSFSV-LHGENVRDFAVKHLKE----HPGQPGIFYCSTRK 240
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ + + R+L +V YH+G+ ++R + QE F ++++ +VAT AFGMG+DK +
Sbjct: 241 ---DVEALHRFLTQRGFAVGRYHAGLSEEERRQAQEDFAYDRVQAIVATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
V VIH +P +LE Y QE GRAGRDG S C L +
Sbjct: 298 VRFVIHCQVPRNLESYYQEAGRAGRDGEESDCILLFN 334
>gi|299820877|ref|ZP_07052766.1| ATP-dependent helicase RecQ [Listeria grayi DSM 20601]
gi|299817898|gb|EFI85133.1| ATP-dependent helicase RecQ [Listeria grayi DSM 20601]
Length = 593
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 214/384 (55%), Gaps = 33/384 (8%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY+ FR+GQ + I+ ++DK+ + ++PTG GKSLCYQIPA++ GLT++V PL++LM D
Sbjct: 13 FGYEDFREGQQDVIEKLIDKQDVLAIMPTGGGKSLCYQIPALLFGGLTIIVSPLISLMKD 72
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + +++S+ +E+ + G I +L+V+PER F + TS
Sbjct: 73 QVDALLAEGVAATYINSTLNGQEIDARLEAAAAGEINMLYVAPERMETPSFRRLLEQTS- 131
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
ISL+ VDEAHC+S+W H+FRPSY R+ +++L I+A+TATAT RD+ + L
Sbjct: 132 ISLMAVDEAHCISQWGHDFRPSY-RVLSNVLAELQPKPPIIALTATATEDVARDICNQLG 190
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +N +Q R+NL V + G Q++ +D + H + Y + E
Sbjct: 191 ITYNNRVQTGFSRENLSFQV-VKG---QDKDKYLLDYLKKNHEQAGIIY----ASTRKEV 242
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ ++ L N I+ YH G+ K R+ QE F + I V+VAT AFGMG++K +V VI
Sbjct: 243 ERLTAILNKNGIAAGQYHGGMSDKARAEYQEQFLYDDITVIVATNAFGMGINKSNVRFVI 302
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHL-----------FLDDIT----------YFRL 534
HY++P ++E Y QE GRAGRDG S C L FL D + Y +L
Sbjct: 303 HYNIPRNMEAYYQEAGRAGRDGLPSDCILLFAPQDAHIQQFLIDQSELSEEYKQNEYLKL 362
Query: 535 RSLMYSDGVDEYAINKFLCQVFTN 558
R M G E + K++ Q F +
Sbjct: 363 RK-MTGYGYTEICLQKYIVQYFGD 385
>gi|430833421|ref|ZP_19451434.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0679]
gi|430838792|ref|ZP_19456736.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0688]
gi|430858468|ref|ZP_19476096.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1552]
gi|431432486|ref|ZP_19512953.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1630]
gi|431758988|ref|ZP_19547606.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E3346]
gi|430486876|gb|ELA63712.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0679]
gi|430491403|gb|ELA67872.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E0688]
gi|430545677|gb|ELA85650.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1552]
gi|430587546|gb|ELB25768.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1630]
gi|430626761|gb|ELB63321.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E3346]
Length = 590
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GL +VV PL+
Sbjct: 4 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLAVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 124 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVATDI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|431034869|ref|ZP_19491746.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1590]
gi|430563584|gb|ELB02793.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1590]
Length = 599
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+P+++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDKFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPSLLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A L N I+A+TATAT D+
Sbjct: 124 NRWN-VCMIAIDEAHCISQWGHDFRPSYLQM-AKQLNQLPNRPVIVALTATATIQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPDGNHIQTGFERENLRFQVV-----KDQKKEQYLVEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L S+ YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRIYHLLKKFGFSIGRYHGGLNENERTAMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|293552867|ref|ZP_06673525.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1039]
gi|291603001|gb|EFF33195.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1039]
Length = 607
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GL +VV PL+
Sbjct: 21 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLAVVVSPLI 80
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 81 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 140
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 141 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVATDI 198
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 199 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 250
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 251 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 310
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 311 VRFVIHYQIPGSLEAYYQEAGRAGRDG 337
>gi|429753766|ref|ZP_19286544.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 326
str. F0382]
gi|429171815|gb|EKY13407.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 326
str. F0382]
Length = 729
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 212/373 (56%), Gaps = 17/373 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L L+ +G+++F+ Q E I V++K++T +++PTG GKSLCYQ+PA++L G +V+
Sbjct: 7 DLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAIVI 66
Query: 248 CPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
PL+ALM +D +R + + H L+SS E+ E + I G K+L+V+PE
Sbjct: 67 SPLIALMKNQVDAMRGISSTDSIAH--VLNSSLTKNEIREVMEDISAGKTKLLYVAPESL 124
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
+ ++ + F T IS V VDEAHC+SEW H+FRP Y ++ + R N+ I+A+TAT
Sbjct: 125 IKEEYAN-FLKTVPISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGSNI-PIVALTAT 182
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
AT D++ L + +N+ + + R NL V N + +V + S K
Sbjct: 183 ATPKVQEDILKNLGMLEANVFKSSFNRPNLYYEVRPKTKNVDADIIRFVKQ-----NSKK 237
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I +S K E +++ L N IS YH+G+ AK R++ Q++F ++ VVVAT+A
Sbjct: 238 SGIIYCLSRKKVED--LAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIA 295
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541
FGMG+DK DV VIH+ +P+S+E Y QE GRAGRDG +C F +L M
Sbjct: 296 FGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIGK 355
Query: 542 GVDEYAINKFLCQ 554
+ E I + L Q
Sbjct: 356 PIAEQEIGQALLQ 368
>gi|213962479|ref|ZP_03390741.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sputigena Capno]
gi|213954805|gb|EEB66125.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sputigena Capno]
Length = 727
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/373 (36%), Positives = 212/373 (56%), Gaps = 17/373 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L L+ +G+++F+ Q E I V++K++T +++PTG GKSLCYQ+PA++L G +V+
Sbjct: 5 DLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAIVI 64
Query: 248 CPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
PL+ALM +D +R + + H L+SS E+ E + I G K+L+V+PE
Sbjct: 65 SPLIALMKNQVDAMRGISSTDSIAH--VLNSSLTKNEIREVMEDISAGKTKLLYVAPESL 122
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
+ ++ + F T IS V VDEAHC+SEW H+FRP Y ++ + R N+ I+A+TAT
Sbjct: 123 IKEEYAN-FLKTVPISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGSNI-PIVALTAT 180
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
AT D++ L + +N+ + + R NL V N + +V + S K
Sbjct: 181 ATPKVQEDILKNLGMLEANVFKSSFNRPNLYYEVRPKTKNVDADIIRFVKQ-----NSKK 235
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I +S K E +++ L N IS YH+G+ AK R++ Q++F ++ VVVAT+A
Sbjct: 236 SGIIYCLSRKKVED--LAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIA 293
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541
FGMG+DK DV VIH+ +P+S+E Y QE GRAGRDG +C F +L M
Sbjct: 294 FGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIGK 353
Query: 542 GVDEYAINKFLCQ 554
+ E I + L Q
Sbjct: 354 PIAEQEIGQALLQ 366
>gi|425056708|ref|ZP_18460149.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 504]
gi|403041644|gb|EJY52649.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 504]
Length = 598
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+PA++L GL +VV PL+
Sbjct: 12 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPALLLDGLAVVVSPLI 71
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 72 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 131
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 132 KRWN-VRMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLPNRPVIVALTATATVQVATDI 189
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP +N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 190 KRLLKIPENNHIQTGFERENLRFQVI-----KDQKKEQYLIEYLKINKNQSG---IIYAA 241
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L SV YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 242 TRKEVDRLYHLLKKFDFSVGRYHGGLNENERTEMQEAFLYDRLQLIVATNAFGMGINKSN 301
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 302 VRFVIHYQIPGSLEAYYQEAGRAGRDG 328
>gi|366086308|ref|ZP_09452793.1| ATP-dependent DNA helicase RecQ [Lactobacillus zeae KCTC 3804]
Length = 593
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 197/328 (60%), Gaps = 13/328 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI V+ +ST++V+PTG GKSLCYQ+PAM+LPGLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRTGQKQAIDRVMAGESTLVVMPTGGGKSLCYQVPAMLLPGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ + + E + + G IK+L+V+PERF N F+
Sbjct: 69 ALMKDQVDALNDNDIPATFINSTLDYQTINERLNQAKSGQIKLLYVAPERFDNDWFVQQL 128
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVE-CILAMTATATTTTLRD 369
AT ++L +DEAHC+S+W H+FRPSY+ L + + A+L ++A+TATAT +D
Sbjct: 129 AATH-VALFAIDEAHCISQWGHDFRPSYLNL--AQVAAQLPAHPPVIALTATATPRVSQD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L IP +I RDNL V R + Y+ + ++ I+ S
Sbjct: 186 ICQRLMIPDDGVINTGFERDNLSFKVV-----RDQDEDRYLLDYLKL--NADQSGIIYAS 238
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ E D + +L + V YH+G+ K R+ QE F ++ +++AT AFGMG+DK
Sbjct: 239 TRK-EVDRLYTFLEHKKLPVAKYHAGMTEKQRATNQEDFLFDRKPIMIATNAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDG 517
+V VIH +P+ LE Y QE GRAGRDG
Sbjct: 298 NVRFVIHAQIPKDLESYYQEAGRAGRDG 325
>gi|312881433|ref|ZP_07741228.1| ATP-dependent DNA helicase RecQ [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370915|gb|EFP98372.1| ATP-dependent DNA helicase RecQ [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 612
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/349 (36%), Positives = 204/349 (58%), Gaps = 22/349 (6%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L ++GY SFR GQ E I+ + + ++++LPTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 20 ILENIFGYQSFRCGQQEVIECAVTGQDSLVILPTGGGKSLCYQIPALVRSGLTLVISPLI 79
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + G+++S+ EE+ T + + G IK+++VSPER L DF+
Sbjct: 80 SLMKDQVDQLVANGVAAGYVNSTMDREELVNTYKRMNDGHIKLIYVSPERVLMRDFIERL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L +++ VDEAHC+S+W H+FRP Y L L+ R +A+TATA T +D+
Sbjct: 140 DNLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPSVPFMALTATADDATRKDI 196
Query: 371 MSALEI--PLSNL--IQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+ L++ P S L + +R NL E+ V +V F + +
Sbjct: 197 LQRLQLKEPFSYLGSFDRPNIRYNLI------------EKHKPVSQVVRFLEGQRGCSGI 244
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
G + ++++ LC+N + SYH+G+ +R+ +Q+ F + I++VVATVAFGMG+
Sbjct: 245 IYCGSRKKVEMLTEKLCNNGLRAASYHAGLDVDERAYVQDAFQRDDIQIVVATVAFGMGI 304
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+K +V V+H+ +P ++E Y QE GRAGRDG + + D DI + R
Sbjct: 305 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADIGWLR 353
>gi|410458455|ref|ZP_11312214.1| ATP-dependent DNA helicase RecQ [Bacillus azotoformans LMG 9581]
gi|409931336|gb|EKN68320.1| ATP-dependent DNA helicase RecQ [Bacillus azotoformans LMG 9581]
Length = 595
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 197/337 (58%), Gaps = 11/337 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GY SFR GQ E I +L K+ T+ +LPTG GKSLCYQ+PA++ G+T+V+ PL
Sbjct: 7 KILKTYFGYSSFRTGQEEIIYQILQKQDTLGILPTGGGKSLCYQVPALLAEGVTIVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I FL+SS E+ E +R G K+L+++PER +F ++
Sbjct: 67 ISLMKDQVDQLQQAGISATFLNSSIDAFEMEERVRDAIHGKYKLLYIAPERLETPNFRAV 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
IS+V VDEAHC+S+W H+FR SY RL ++ ++A+TATAT + D
Sbjct: 127 LERIP-ISIVAVDEAHCISQWGHDFRLSY-RLIYQMIEGLRVKPTVVALTATATPIVMED 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L IP N + R+NL SV + G +++ Y+ + R ++ I +
Sbjct: 185 IREQLRIPRENTVVTGFKRENLTFSV-VKGQEKRSFILKYIQD-----RPNQSGIIYAAT 238
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K E D + +L I YH+G+ ++R+ Q+ F KI V+VAT AFGMG+D
Sbjct: 239 RK--EVDQLHEFLLQKGIKAGKYHAGLSEEERNHAQDQFIFEKIAVMVATNAFGMGIDAS 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+V VIH++LP+++E Y QE GRAGRDG S C L
Sbjct: 297 NVRFVIHHNLPKNMESYYQEAGRAGRDGERSECILLF 333
>gi|417955149|ref|ZP_12598172.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342813701|gb|EGU48661.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 612
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY FRDGQ E I+ + + +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 20 ILENVFGYQIFRDGQQEVIESAVAGQDSLVIMPTGGGKSLCYQIPALVRSGLTLVISPLI 79
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++S+ EE+ + GA+K+++VSPER L DF+
Sbjct: 80 SLMKDQVDQLKANGVAAECINSTMSREELISVYNRMHSGALKLVYVSPERVLMRDFIERL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L S++ VDEAHC+S+W H+FRP Y L L+ ++A+TATA T +D+
Sbjct: 140 ESLPL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKQYFPHVPVMALTATADDATRKDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
M L++ + + R N++ ++ E+ V +V F + + + G
Sbjct: 197 MQRLQLNEPHTYLGSFDRPNIRYTLV--------EKHKPVSQVVRFLENQRGSCGIIYCG 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N + SYH+G+ A +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 249 SRKKVEMVTEKLCNNGLRAASYHAGLEADERAYVQEAFQRDDIQIVVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 309 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 353
>gi|431751622|ref|ZP_19540310.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2620]
gi|430615403|gb|ELB52361.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2620]
Length = 599
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+P+++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDKFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPSLLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A L N I+A+TATAT D+
Sbjct: 124 NRWN-VCMIAIDEAHCISQWGHDFRPSYLQM-AKQLNQLPNRPVIVALTATATIQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPDGNHIQTGFERENLRFQVV-----KDKKKEQYLVEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L S+ YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRIYHLLKKFGFSIGRYHGGLNENERTAMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|223983956|ref|ZP_03634114.1| hypothetical protein HOLDEFILI_01395 [Holdemania filiformis DSM
12042]
gi|223964032|gb|EEF68386.1| hypothetical protein HOLDEFILI_01395 [Holdemania filiformis DSM
12042]
Length = 620
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 211/363 (58%), Gaps = 26/363 (7%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR+GQ + I +L + + ++PTGAGKS+CYQIPA++L G+TLV+ PL++
Sbjct: 7 LKKYFGYDSFREGQAKIINAILAGRDALAIMPTGAGKSICYQIPAVMLHGITLVISPLIS 66
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM+DQ++ L I F++SS ++A+ + L + G K+++V+PER + DF+ F
Sbjct: 67 LMMDQVKALNEAGIRAAFINSSLSETQIAKALLLAEKGVYKIIYVAPERLESHDFIH-FA 125
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ IS++ VDEAHC+S+W +FRPSY+++ +++ + A TATAT D++
Sbjct: 126 RQADISMITVDEAHCISQWGQDFRPSYLKI-IEFVKSLPKRPIVSAFTATATQEVKTDIL 184
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L + ++ R NL SV ++ ++ +V E H K I+ + +
Sbjct: 185 CVLNLIEPEVVVTGFDRKNLFYSVE-----KRKDKDHFVIEYVEKH--VKESGIIYCATR 237
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
D + L +SV YH+G+ ++R + Q+ F ++ V+VAT AFGMG+DK +V
Sbjct: 238 K-NVDNLFMLLSKQGVSVTRYHAGLDKEERKQNQDDFIYDRTPVIVATNAFGMGIDKSNV 296
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKF 551
VIHY++P+S+E Y QE GRAGRDG S C L F + +M INKF
Sbjct: 297 RYVIHYNMPQSMESYYQEAGRAGRDGETSQCILL------FSAQDIM---------INKF 341
Query: 552 LCQ 554
L +
Sbjct: 342 LLE 344
>gi|261250050|ref|ZP_05942627.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260939554|gb|EEX95539.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 602
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 205/345 (59%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY FRDGQ E I+ + + +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 10 ILENVFGYQIFRDGQQEVIESAVAGQDSLVIMPTGGGKSLCYQIPALVRSGLTLVISPLI 69
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++S+ EE+ + GA+K+++VSPER L DF+
Sbjct: 70 SLMKDQVDQLKANGVAAECINSTMSREELISVYNRMHSGALKLVYVSPERVLMRDFIERL 129
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L S++ VDEAHC+S+W H+FRP Y L L+ ++A+TATA T +D+
Sbjct: 130 ESLPL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKQYFPHVPVMALTATADDATRKDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
M L++ + + R N++ ++ E+ V +V F + + + G
Sbjct: 187 MQRLQLNEPHTYLGSFDRPNIRYTLV--------EKHKPVSQVVRFLENQRGSCGIIYCG 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N + SYH+G+ A +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 239 SRKKVEMVTEKLCNNGLRAASYHAGLEADERAYVQEAFQRDDIQIVVATVAFGMGINKPN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 299 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 343
>gi|429750375|ref|ZP_19283426.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 332
str. F0381]
gi|429165304|gb|EKY07364.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 332
str. F0381]
Length = 727
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/376 (36%), Positives = 213/376 (56%), Gaps = 17/376 (4%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
+ ++L L+ +G++SF+ Q E I V++K++T +++PTG GKSLCYQ+PA++L G
Sbjct: 2 TKDDLHSALKHYFGFESFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTA 61
Query: 245 LVVCPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298
+V+ PL+ALM +D +R + + H L+SS E+ E + I G K+L+V+P
Sbjct: 62 IVISPLIALMKNQVDAMRGISSTDSIAH--VLNSSLTKNEIREVMEDISNGKTKLLYVAP 119
Query: 299 ERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAM 358
E + ++ + F T IS V VDEAHC+SEW H+FRP Y ++ + R N+ I+A+
Sbjct: 120 ESLIKEEYAN-FLKTVPISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGTNI-PIVAL 177
Query: 359 TATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR 418
TATAT D++ L + +N+ + + R NL V N + +V +
Sbjct: 178 TATATPKVQEDILKNLAMTDANVFKSSFNRPNLYYEVRPKTKNVDADIIRFVKQ-----N 232
Query: 419 SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
K I +S K E +++ L N IS YH+G+ AK R++ Q++F ++ VVVA
Sbjct: 233 PKKSGIIYCLSRKKVEE--LTQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVA 290
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
T+AFGMG+DK DV VIH+ +P+S+E Y QE GRAGRDG +C F +L M
Sbjct: 291 TIAFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFM 350
Query: 539 YSDGVDEYAINKFLCQ 554
+ E I + L Q
Sbjct: 351 IGKPIAEQEIGQALLQ 366
>gi|392955940|ref|ZP_10321470.1| ATP-dependent DNA helicase RecQ [Bacillus macauensis ZFHKF-1]
gi|391878182|gb|EIT86772.1| ATP-dependent DNA helicase RecQ [Bacillus macauensis ZFHKF-1]
Length = 704
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 197/336 (58%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L YGY FR GQ IK +L+K++T+ ++PTG GKS+CYQIPA++ G+TLV+ PL+
Sbjct: 8 VLSKYYGYADFRPGQDVIIKSILNKQNTLGIMPTGGGKSICYQIPAVLFQGVTLVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L V I + +SS EVA+ + + G ++++V+PER A F +
Sbjct: 68 SLMKDQVDSLQNVGIAATYFNSSLSHHEVAQRLEETKQGVYQLIYVAPERLEVASFRHLL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
T +S+V +DEAHC+S+W H+FRPSY+R++ ++ + I A+TATAT RD+
Sbjct: 128 Q-TLPVSMVAIDEAHCISQWGHDFRPSYLRIK-EVIESLPTKPVIAALTATATEQVKRDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L I R+NL SV + ER +++ + + +K + +
Sbjct: 186 CHLLHIAPQQAFVTGFARENLSFSVL-----KDEERRPFIER---YIQQNKENSGIIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + Y +SV YH+G+ ++R Q F + I V++AT AFGMG++K +
Sbjct: 238 TRKEVDQLHHYFQKKGVSVGKYHAGLSEEERRSSQNAFIHDDILVMIATNAFGMGINKTN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHY++P+++E Y QE GRAGRDG LS C LF
Sbjct: 298 VRYVIHYNVPKNIEAYYQEAGRAGRDGELSECLLFF 333
>gi|418070328|ref|ZP_12707603.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus R0011]
gi|423078565|ref|ZP_17067244.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus ATCC
21052]
gi|357539748|gb|EHJ23765.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus R0011]
gi|357550417|gb|EHJ32235.1| ATP-dependent DNA helicase RecQ [Lactobacillus rhamnosus ATCC
21052]
Length = 593
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 193/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI+ ++ KST++V+PT GKSLCYQ+PAMILPGLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQKQAIERIMTGKSTLVVMPTSGGKSLCYQVPAMILPGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ E+ + + G IK+L+V+PERF +AD+
Sbjct: 69 ALMKDQVDALNDNAIPAAFINSTLDYREITARLEQARSGDIKLLYVAPERF-DADWFLQQ 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGDMNISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I RDNL V R + Y+ + + I+ S
Sbjct: 187 CQRLMIPDDGVINTGFERDNLSFKVV-----RDQDEDRYLLDYLKLNVDQSG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D I +L + V YH+G+ K R+ QE F ++ ++VAT AFGMG+DK +
Sbjct: 240 RK-EVDRIYAFLQHKQLPVAKYHAGMTEKQRAANQEDFLFDRKPIMVATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ LE Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDLESYYQEAGRAGRDG 325
>gi|339491852|ref|YP_004706357.1| ATP-dependent DNA helicase RecQ [Leuconostoc sp. C2]
gi|338853524|gb|AEJ31734.1| ATP-dependent DNA helicase RecQ [Leuconostoc sp. C2]
Length = 601
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR GQL+ I+ VL K + ++PTG GKS+ YQ+PA++ G+TLV+ PL+
Sbjct: 7 ILKEVFGYDDFRTGQLDIIEKVLAHKHALAIMPTGGGKSITYQLPALMFQGITLVISPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I FL+S+ + A+ + ++ G K+L+VSPER F S F
Sbjct: 67 SLMKDQVDGLDAMGIAATFLNSTLSGQVQAQRMSDLRQGVYKMLYVSPERLEIPSFFS-F 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I L+ +DEAH +S+W H+FRPSY+ + LL +L +TATAT +++
Sbjct: 126 IQQLPIELIAIDEAHVMSQWGHDFRPSYLNI-LPLLAEIPGRPAVLGLTATATDRVRQNL 184
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LE+P N + RDNL L ++ + + RQ YV + + R +K + + +
Sbjct: 185 QQLLEVPDENTVLTGFARDNLALKIARNVDKRQ-----YVQD---YLRENKEHSGIIYAA 236
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + +L + YH+G+P ++R +QE F ++++V+VAT AFGMG++K +
Sbjct: 237 TRKQVDELYDFLNKKGVKAGHYHAGLPERERQAMQEAFLFDEVQVIVATNAFGMGINKPN 296
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHYS+P ++E Y QEIGRAGRDG
Sbjct: 297 VRFVIHYSVPGNIEAYYQEIGRAGRDG 323
>gi|257887598|ref|ZP_05667251.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,141,733]
gi|257823652|gb|EEV50584.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 1,141,733]
Length = 599
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+P+++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDKFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPSLLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A L N I+A+TATAT D+
Sbjct: 124 NRWN-VCMIAIDEAHCISQWGHDFRPSYLQM-AKQLNQLPNRPVIVALTATATIQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPDGNHIQTGFERENLRFQVV-----KDQKKEQYLVEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L S+ YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRIYHLLKKFGFSIGRYHGGLNENERTAMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VCFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|384175704|ref|YP_005557089.1| ATP-dependent DNA helicase RecQ [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349594928|gb|AEP91115.1| ATP-dependent DNA helicase RecQ [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 591
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 198/337 (58%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ FR GQ EAI++V + +++T ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ +++S+Q +E+ E + ++ G K+ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGNYKLFYITPERLTSTEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ LV +DEAHC+S+W H+FRPSY + L R + I+A+TATAT D
Sbjct: 128 LQGID-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFRELHDKPVIMALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + R+NL V + G N+ ++DE + ++++H + +
Sbjct: 186 ICKQLHIQKENTVYTGFSRENLTFKV-VKGENKDR----FIDE---YVQNNRHEAGIVYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D I L N + YH G+ +R QE F +++++V+VAT AFGMG+DK
Sbjct: 238 ATRKEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLF 334
>gi|257898730|ref|ZP_05678383.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Com15]
gi|257836642|gb|EEV61716.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium Com15]
Length = 590
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+P+++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPSLLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A L N I+A+TATAT D+
Sbjct: 124 NRWN-VCMIAIDEAHCISQWGHDFRPSYLQM-AKQLDQLPNQPVIVALTATATIQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPDGNHIQTGFERENLRFQVV-----KDQKKEQYLVEYLKVNKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L S+ YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRIYHLLKKFGFSIGRYHGGLKENERTAMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|336434030|ref|ZP_08613835.1| hypothetical protein HMPREF0991_02954 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336014617|gb|EGN44457.1| hypothetical protein HMPREF0991_02954 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 753
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 198/336 (58%), Gaps = 11/336 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GYDSFR GQ E I +L + + ++PTGAGKSLCYQ+PA+++ G+T+V+ PL
Sbjct: 7 QILKTYFGYDSFRPGQEEIIDQILAGRDALAIMPTGAGKSLCYQVPALMMRGITIVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM+DQ++ L IH +++SS +VA+ + + G K+++V+PER FL
Sbjct: 67 ISLMMDQVKALNEAGIHAAYINSSLTENQVAKALEFAKAGRYKIVYVAPERLETPRFLD- 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F + IS+V +DEAHC+S+W +FRPSY+R+ S +R + A TATAT D
Sbjct: 126 FACHAEISMVTIDEAHCISQWGQDFRPSYVRI-VSFIRQLPVRPIVTAFTATATKRVQTD 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L++ + R+NL V R E+ + E H S + I +
Sbjct: 185 IREVLKLQNPYVAVTGFDRENLYFEV-----QRTKEKKERIREYLEKH-SDESGIIYCAT 238
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K+ D + +L SV YH+G+ + R QE F ++I+V++AT AFGMG+DK
Sbjct: 239 RKN--VDELYLFLESAGFSVGRYHAGMGNEARKSSQEDFIYDRIQVMIATNAFGMGIDKS 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+V V+HY++P+SLE Y QE GRAGRD S C ++
Sbjct: 297 NVRYVLHYNMPQSLENYYQEAGRAGRDSEPSECIIY 332
>gi|308051389|ref|YP_003914955.1| ATP-dependent DNA helicase RecQ [Ferrimonas balearica DSM 9799]
gi|307633579|gb|ADN77881.1| ATP-dependent DNA helicase RecQ [Ferrimonas balearica DSM 9799]
Length = 608
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 200/347 (57%), Gaps = 12/347 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+G+ +FR GQ E + L + ++++PTG GKSLCYQ+PA++LPGLT+V+ PL++
Sbjct: 19 LQQVFGFRAFRPGQDEVVAQTLAGRDCLVIMPTGGGKSLCYQLPALVLPGLTVVISPLIS 78
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + L+SS EV E + I G IK+L++SPER L+AD
Sbjct: 79 LMKDQVDALRESGVAAAALNSSLERHEVVELMGAIHRGEIKLLYISPERLLSADIQERLA 138
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
L SLV VDEAHC+S+W H+FRP Y +L L+ R I+A+TATA T +D+
Sbjct: 139 HWPL-SLVAVDEAHCISQWGHDFRPEYAQL--GWLKQRFPQVPIMALTATADGATRQDIC 195
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L + Q + R N++ +V+ E+ ++++ + + K + G
Sbjct: 196 QRLNLQQPFHHQSSFDRPNIRYTVA--------EKLRPLEQLTEYLKQQKGNAGIVYCGS 247
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
D ++ L YH+G+ + +R+ +QE F +++ +VVATVAFGMG++K +V
Sbjct: 248 RRRVDEVAEKLRQKGFVAAGYHAGMASDERAAVQEGFLRDRVDIVVATVAFGMGINKSNV 307
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
V+H+ LP+S+E Y QE GRAGRDG S L D R+R L+
Sbjct: 308 RFVVHWDLPKSIEGYYQETGRAGRDGLESEALLLFDPADIARIRHLL 354
>gi|154506622|ref|ZP_02043079.1| hypothetical protein RUMGNA_03889 [Ruminococcus gnavus ATCC 29149]
gi|153793375|gb|EDN75797.1| ATP-dependent DNA helicase RecQ [Ruminococcus gnavus ATCC 29149]
Length = 763
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 198/336 (58%), Gaps = 11/336 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GYDSFR GQ E I +L + + ++PTGAGKSLCYQ+PA+++ G+T+V+ PL
Sbjct: 17 QILKTYFGYDSFRPGQEEIIDQILAGRDALAIMPTGAGKSLCYQVPALMMRGITIVISPL 76
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM+DQ++ L IH +++SS +VA+ + + G K+++V+PER FL
Sbjct: 77 ISLMMDQVKALNEAGIHAAYINSSLTENQVAKALEFAKAGRYKIVYVAPERLETPRFLD- 135
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F + IS+V +DEAHC+S+W +FRPSY+R+ S +R + A TATAT D
Sbjct: 136 FACHAEISMVTIDEAHCISQWGQDFRPSYVRI-VSFIRQLPVRPIVTAFTATATKRVQTD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L++ + R+NL V R E+ + E H S + I +
Sbjct: 195 IREVLKLQNPYVAVTGFDRENLYFEV-----QRTKEKKERIREYLEKH-SDESGIIYCAT 248
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K+ D + +L SV YH+G+ + R QE F ++I+V++AT AFGMG+DK
Sbjct: 249 RKN--VDELYLFLESAGFSVGRYHAGMGNEARKSSQEDFIYDRIQVMIATNAFGMGIDKS 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+V V+HY++P+SLE Y QE GRAGRD S C ++
Sbjct: 307 NVRYVLHYNMPQSLENYYQEAGRAGRDSEPSECIIY 342
>gi|421766700|ref|ZP_16203469.1| ATP-dependent DNA helicase RecQ [Lactococcus garvieae DCC43]
gi|407624726|gb|EKF51459.1| ATP-dependent DNA helicase RecQ [Lactococcus garvieae DCC43]
Length = 594
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/362 (37%), Positives = 210/362 (58%), Gaps = 24/362 (6%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ ++GY++FR GQ + I+ VL T+ +LPTGAGKS+CYQ+PA++ G+TLVV
Sbjct: 2 NLEEKLKEIFGYENFRQGQKQIIEQVLKGTDTLGILPTGAGKSICYQLPALLQEGVTLVV 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I F++S+ +E + ++ G +K+LFV+PERF F
Sbjct: 62 SPLISLMKDQVDQLNIANIPATFINSTVDDQETRFRMAQVESGEVKILFVAPERFELESF 121
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ F I LV +DEAHC+S+W H+FRPSY+ A L ILA+TATAT
Sbjct: 122 -NYFLQHLPIDLVAIDEAHCISQWGHDFRPSYVTF-AERLADLPTAPTILALTATATPRV 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV----DEVFSFHRSSKH 422
+D+ L I N ++ LR+NL+ V + G ++++ +Y+ DE + +++
Sbjct: 180 AKDIQDLLRISPENTVKTGFLRENLRFEV-VKGKDKRDFLKSYLKKHPDESGIIYANTRK 238
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
E + ++ +L N K YH+G+ ++R QE F + ++++VAT AF
Sbjct: 239 -----------EVEEVTEWLNRNHFPAKRYHAGLSERERQNNQEDFLYDDVQIMVATNAF 287
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYS 540
GMG++K +V VIHY +P ++E Y QE GRAGRDG S L +D+ RLR+ +
Sbjct: 288 GMGINKSNVRFVIHYGMPATIEGYYQEAGRAGRDGLDSDAILLFSPNDV---RLRNFLIE 344
Query: 541 DG 542
G
Sbjct: 345 QG 346
>gi|262392866|ref|YP_003284720.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
gi|451976070|ref|ZP_21927241.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus E0666]
gi|262336460|gb|ACY50255.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
gi|451929977|gb|EMD77700.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus E0666]
Length = 611
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 204/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY +FRDGQ E I+ ++ K +++++PTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 18 RVLEEVFGYQTFRDGQQEVIEAAIEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+++VSPER L DF+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTMNREELLSVYNRMHSGQLKLVYVSPERVLMRDFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L S++ VDEAHC+S+W H+FRP Y L L+ + +A+TATA T RD
Sbjct: 138 LENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQHFSHVPFMALTATADDATRRD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L + + + R N++ ++ E+ V ++ + + K +
Sbjct: 195 ILERLRLHEPQVYLGSFDRPNIRYTLV--------EKHKPVSQIIRYLATQKGSCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N I YH+G+ ++R+ +QE F + I++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMVTEKLCNNHIRAAGYHAGMDTEERAYVQEAFQRDDIQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|16078982|ref|NP_389803.1| ATP-dependent nucleic acid helicase [Bacillus subtilis subsp.
subtilis str. 168]
gi|221309820|ref|ZP_03591667.1| hypothetical protein Bsubs1_10606 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314142|ref|ZP_03595947.1| hypothetical protein BsubsN3_10537 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319064|ref|ZP_03600358.1| hypothetical protein BsubsJ_10453 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323338|ref|ZP_03604632.1| hypothetical protein BsubsS_10572 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402776171|ref|YP_006630115.1| ATP-dependent nucleic acid helicase [Bacillus subtilis QB928]
gi|452915898|ref|ZP_21964523.1| ATP-dependent DNA helicase RecQ [Bacillus subtilis MB73/2]
gi|81342384|sp|O34748.1|RECQ_BACSU RecName: Full=Probable ATP-dependent DNA helicase RecQ
gi|2619051|gb|AAB84475.1| RecQ homolog [Bacillus subtilis]
gi|2634315|emb|CAB13814.1| ribonuclease toxin of toxin-antitoxin systems RttI-RttJ [Bacillus
subtilis subsp. subtilis str. 168]
gi|402481352|gb|AFQ57861.1| Putative ATP-dependent nucleic acid helicase [Bacillus subtilis
QB928]
gi|407959345|dbj|BAM52585.1| ATP-dependent nucleic acid helicase [Bacillus subtilis BEST7613]
gi|407964921|dbj|BAM58160.1| ATP-dependent nucleic acid helicase [Bacillus subtilis BEST7003]
gi|452114908|gb|EME05305.1| ATP-dependent DNA helicase RecQ [Bacillus subtilis MB73/2]
Length = 591
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 198/337 (58%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ FR GQ EAI++V + +++T ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ +++S+Q +E+ E + ++ GA K+ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSIEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ LV +DEAHC+S+W H+FRPSY + L R + I+A+TATAT D
Sbjct: 128 LQGID-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFRELHDKPVIMALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + R+NL V + G N+ ++DE + ++++H + +
Sbjct: 186 ICKQLHIQKENTVYTGFSRENLTFKV-VKGENKDR----FIDE---YVQNNRHEAGIVYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D I L N + YH G+ R QE F +++++V+VAT AFGMG+DK
Sbjct: 238 ATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLF 334
>gi|456012240|gb|EMF45946.1| ATP-dependent DNA helicase RecQ [Planococcus halocryophilus Or1]
Length = 594
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 198/333 (59%), Gaps = 11/333 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+LL+ +GY+SFR GQ +AI V + +++ V+PTG GKS+CYQIPA+++ G T+VV PL
Sbjct: 10 KLLQSHFGYESFRVGQEQAITQVFEGHNSICVMPTGGGKSMCYQIPALVMEGTTIVVSPL 69
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +++SS +EV ET+ +Q GAIK+L+++PER + FL+
Sbjct: 70 ISLMKDQVDALLAAGIPAAYINSSLDFDEVRETLMDVQRGAIKLLYIAPERLDSEMFLNE 129
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L+ VDEAHC+S+W H+FRPSY RL + + N +LA+TATAT D
Sbjct: 130 LQGVH-VPLIAVDEAHCISQWGHDFRPSY-RLISRMTELFPNNPTVLALTATATPQVRED 187
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I + + R NL SV R +R +V E + ++ K I+ +
Sbjct: 188 ICRILNIEEQHTVMTGFERANLTFSVV-----RGQDRERFVKEYVA--KNDKEAGIIYAA 240
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ D + L I YH+G+ +R QE F ++++ V+VAT AFGMG+DK
Sbjct: 241 TRK-TVDSVYEMLIKKGIKAAKYHAGMSDNERKSGQERFLNDEVTVMVATNAFGMGIDKS 299
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
++ VIHY LP+++E Y QE GRAGRDG S C
Sbjct: 300 NIRFVIHYQLPKNMESYYQEAGRAGRDGLPSEC 332
>gi|288556771|ref|YP_003428706.1| ATP-dependent DNA helicase RecS [Bacillus pseudofirmus OF4]
gi|288547931|gb|ADC51814.1| ATP-dependent DNA helicase RecS [Bacillus pseudofirmus OF4]
Length = 708
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/338 (41%), Positives = 202/338 (59%), Gaps = 13/338 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ YGYDSFR GQ + I+ VL +K T+ ++PTG GKSLCYQIPA+ L G+TLV+ PL
Sbjct: 11 QILKTYYGYDSFRYGQQQIIEQVLAQKDTLGIMPTGGGKSLCYQIPALTLEGVTLVISPL 70
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +L+S+ EE E I LIQ G K+++V+PER + F +
Sbjct: 71 ISLMKDQVDALHQLNIAATYLNSTLTREEEEERISLIQTGEYKLVYVAPERLVQPFFQQL 130
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVE-CILAMTATATTTTLR 368
+ L SLV +DE HC+S+W H+FRPSY+ + A L N +LA+TATAT +
Sbjct: 131 LASIPL-SLVAIDETHCLSQWGHDFRPSYLGISAWL--NNFNQRPPVLALTATATEAVQK 187
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+ + L+I N + R+NL L V L G ++ YV + H+S +
Sbjct: 188 DIQNHLDIQNENTVVTGFNRENLTLKV-LKGIDKWR----YVKQYVQTHKSEAG---IIY 239
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ E + + L + I YH G+ +R+R QE F +++ V+VAT AFGMG+DK
Sbjct: 240 ANTRKEVEQLYHKLQEADIQAAMYHGGLNENERARHQEAFLHDQVSVMVATNAFGMGIDK 299
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+V V+HY++P ++E Y QE GRAGRDG S C L
Sbjct: 300 SNVRYVVHYNMPRTIESYYQEAGRAGRDGEDSECVLLF 337
>gi|419841356|ref|ZP_14364728.1| ATP-dependent DNA helicase RecQ [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|386905290|gb|EIJ70059.1| ATP-dependent DNA helicase RecQ [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
Length = 591
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 195/329 (59%), Gaps = 12/329 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+LL+ +YGY++FR GQ + V K + +L TG GKS+CYQIPA++ GLTLV+ PL
Sbjct: 7 KLLQDIYGYENFRKGQKIILDSVFQGKEVLGILTTGGGKSICYQIPALLFEGLTLVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L V + FL+S+ +PEE + + G IK+L+V+PER LN +F+++
Sbjct: 67 ISLMKDQVDALKMVGVKSAFLNSTLKPEEYRRLVGKVIRGEIKILYVTPERLLNENFVTL 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
ISL+ VDEAHC+S+W H+FR SY+ + + + R V+ ILA+TATAT D
Sbjct: 127 MQKIK-ISLLAVDEAHCISQWGHDFRKSYLGIPNFIGKLRQKVQ-ILALTATATPRVQED 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L IP +++ Q + R NL V R AYV + +S I+ S
Sbjct: 185 ILEKLNIPNASIYQGSFNRKNLYFRVE-----RGKVPEAYVADYLK--KSQGEAGIVYCS 237
Query: 430 GKHFETDLISRYLCD-NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ D + YL + S YH G+ ++R Q F +K++V+VAT AFGMG+DK
Sbjct: 238 TRK-SVDSMYSYLKEIRGYSAGKYHGGMEKQEREESQNNFLQDKLQVMVATNAFGMGIDK 296
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
+V VIH +LP LE Y QE GRAGRDG
Sbjct: 297 SNVRFVIHANLPGDLESYYQEAGRAGRDG 325
>gi|228997737|ref|ZP_04157342.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides Rock3-17]
gi|229005275|ref|ZP_04162990.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides Rock1-4]
gi|228755914|gb|EEM05244.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides Rock1-4]
gi|228761979|gb|EEM10920.1| ATP-dependent DNA helicase RecQ [Bacillus mycoides Rock3-17]
Length = 705
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 193/335 (57%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VL K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLAGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
ALEI N I R+NL SV + G +R + Y+ R +K + +
Sbjct: 186 CRALEINQENTIMTTFERENLSFSV-IKGQDRNAYLADYI-------RQNKKESGIIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
D + L +SV YH+G+ DR+ QE F +++ V+VAT AFGMG+DK +
Sbjct: 238 TRKVVDQLYEDLYKAGVSVARYHAGMNDHDRNEQQERFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|293571950|ref|ZP_06682964.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E980]
gi|430841071|ref|ZP_19458991.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1007]
gi|431582185|ref|ZP_19520134.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1861]
gi|431737920|ref|ZP_19526871.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1972]
gi|291607968|gb|EFF37276.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E980]
gi|430494513|gb|ELA70756.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1007]
gi|430594075|gb|ELB32045.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1861]
gi|430598222|gb|ELB35969.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1972]
Length = 590
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+P++++ GLT+VV PL+
Sbjct: 4 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPSLLVDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ +DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMSDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A L N I+A+TATAT D+
Sbjct: 124 NRWN-VCMIAIDEAHCISQWGHDFRPSYLQM-AKQLDQLPNRPVIVALTATATIQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPDGNHIQTGFGRENLRFQVV-----KDQKKEQYLVEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L S+ YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRIYHLLKKFGFSIGRYHGGLKENERTAMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|254230201|ref|ZP_04923594.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
gi|151937286|gb|EDN56151.1| ATP-dependent DNA helicase RecQ [Vibrio sp. Ex25]
Length = 633
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 204/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY +FRDGQ E I+ ++ K +++++PTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 40 RVLEEVFGYQTFRDGQQEVIEAAIEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPL 99
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+++VSPER L DF+
Sbjct: 100 ISLMKDQVDQLKANGVAAECVNSTMNREELLSVYNRMHSGQLKLVYVSPERVLMRDFIER 159
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L S++ VDEAHC+S+W H+FRP Y L L+ + +A+TATA T RD
Sbjct: 160 LENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQHFSHVPFMALTATADDATRRD 216
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L + + + R N++ ++ E+ V ++ + + K +
Sbjct: 217 ILERLRLHEPQVYLGSFDRPNIRYTLV--------EKHKPVSQIIRYLATQKGSCGIIYC 268
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N I YH+G+ ++R+ +QE F + I++VVATVAFGMG++K
Sbjct: 269 GSRKKVEMVTEKLCNNHIRAAGYHAGMDTEERAYVQEAFQRDDIQIVVATVAFGMGINKP 328
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 329 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 374
>gi|406992253|gb|EKE11639.1| hypothetical protein ACD_15C00045G0022 [uncultured bacterium]
Length = 535
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/397 (36%), Positives = 220/397 (55%), Gaps = 34/397 (8%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
L + L + + FR GQ E I+ +L+KK + ++PTG GKSLCYQ+PA++ T+++
Sbjct: 2 LEKQLEKYFSFSQFRSGQKEIIESILEKKDVVALMPTGGGKSLCYQLPAILSENTTVIIS 61
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL+ALM DQ+ L I F++SS E+ + ++ I++G K+++++PERF N F
Sbjct: 62 PLIALMKDQVDSLAARGIPATFINSSLEFPEMEKRLQDIRLGKTKIVYIAPERFANISFR 121
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
+F+ T ISL VDEAHCVS+W H+FRP Y+ + ++ + A TATAT
Sbjct: 122 KLFS-TLEISLFAVDEAHCVSQWGHDFRPDYLEI-GKYIKTLPKRPSVAAFTATATPEVK 179
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQL--SVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D+++ L++ + + R N++ +L+ R +DEV +S I
Sbjct: 180 DDIIARLDLQDPRIFIRGFDRPNIKFFAQANLTPTQR-------LDEVLRIIKSLDGSGI 232
Query: 426 L-QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ +S K+ E I+RYL N+IS ++YH+G+ A R +IQ F N+ +V+VATVAFGM
Sbjct: 233 VYSLSRKNAED--IARYLQKNNISAQAYHAGMNASRREKIQNDFMENRFKVIVATVAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD 544
G+DK D+ VIH +P SLE Y QE GRAGRDG S+C L G
Sbjct: 291 GVDKADIRYVIHCGMPGSLEGYYQEAGRAGRDGEKSFCILL---------------HGKR 335
Query: 545 EYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIK 581
+ +K+ ++ M + GK + SR DIK
Sbjct: 336 DVTTHKYFIRIDRQNMMAQGKSYGEI----SRVLDIK 368
>gi|384047158|ref|YP_005495175.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium WSH-002]
gi|345444849|gb|AEN89866.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium WSH-002]
Length = 711
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 198/331 (59%), Gaps = 11/331 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR GQ E+I+ VL+ +T ++PTG GKSLCYQIP+++L G TLV+ PL++
Sbjct: 10 LQSYFGYDSFRKGQEESIRYVLEGHNTACIMPTGGGKSLCYQIPSLLLEGTTLVISPLIS 69
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I +++SS EV + + + +G K+L+V+PER + FL
Sbjct: 70 LMKDQVDTLNAAGIPATYINSSLTHTEVQQRLEEVALGEYKLLYVAPERLESPQFLEQLQ 129
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
I LV VDEAHC+S+W H+FRPSY+R+ + L+ N ++ +TATAT D+
Sbjct: 130 MLP-IPLVAVDEAHCISQWGHDFRPSYLRI-SDLITKLSNAPIVMGLTATATPQVREDIC 187
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
AL I + R+NL +V + +R +Y+D+ ++ + I+ + +
Sbjct: 188 RALHINEEYTVMTGFERENLSFAVV-----KGQDRISYIDQY--IRKNDQEAGIIYAATR 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+L +R L + ++V YH+G+ A R Q F + ++V++AT AFGMG+DK ++
Sbjct: 241 KDVEELHAR-LQKSGVNVSKYHAGMSANSRDEEQNRFLQDDVQVMIATSAFGMGIDKSNI 299
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
V+HY LP+++E Y QE GRAGRDG S C
Sbjct: 300 RFVLHYQLPKNMESYYQEAGRAGRDGLPSEC 330
>gi|359413092|ref|ZP_09205557.1| ATP-dependent DNA helicase RecQ [Clostridium sp. DL-VIII]
gi|357171976|gb|EHJ00151.1| ATP-dependent DNA helicase RecQ [Clostridium sp. DL-VIII]
Length = 814
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 200/338 (59%), Gaps = 15/338 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L YGY +FR GQ I ++ + + ++PTG GKS+CYQIPA+IL G+T+V+ PL+
Sbjct: 8 VLEKYYGYKNFRKGQEVIIDKIIKGEDVLAIMPTGGGKSICYQIPALILEGITIVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I G ++S+ E E I+ ++ G IK+L+++PER + +FL+I
Sbjct: 68 SLMKDQVDTLKEMGIKGALINSTLSAVEENEVIKSLENGDIKILYIAPERLESFEFLNII 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTLR 368
+ + IS V VDEAHC+S+W H+FR SY ++ SLL R + A TATA+
Sbjct: 128 SRCN-ISQVAVDEAHCISQWGHDFRSSYRKISHFISLLSNR---PIVTAFTATASQEVRE 183
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D++S L + N+ R+NL ++V SG+ ++ Y+ S+ ++K +
Sbjct: 184 DIISLLRLKAPNVFITGFDRENLTINVIKSGSKKE-----YLQ---SYIENNKEVSGIIY 235
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ E D + L +V SYH+G+ K R QE F +K ++VAT AFGMG+DK
Sbjct: 236 AATRKEVDNLYEILNSKGYNVTSYHAGLSEKIRKENQENFIYDKANIMVATNAFGMGIDK 295
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+HY++P ++E Y QEIGRAGRDG S C L
Sbjct: 296 PNIRYVVHYNMPRNIESYYQEIGRAGRDGEQSECTLLF 333
>gi|114045876|ref|YP_736426.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
gi|113887318|gb|ABI41369.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
Length = 607
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/354 (37%), Positives = 206/354 (58%), Gaps = 13/354 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D+ L + L V+GY FRDGQ E I+ V + ++++PTG GKSLCYQ+PA+++PG+T+
Sbjct: 10 DDPLSQRLAQVFGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALLMPGITI 69
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
VV PL++LM DQ+ L ++ +L+SSQ E+ E +R + G +K+L+VSPER L A
Sbjct: 70 VVSPLISLMKDQVDSLLQTGVNAAYLNSSQPREQSLEVLRQLHRGELKLLYVSPERLLTA 129
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
DF+ + L S+ +DEAHC+S+W H+FRP Y L L+ + ++A+TATA
Sbjct: 130 DFIERMRSLPL-SMFAIDEAHCISQWGHDFRPEYAAL--GQLKQLFPLVPMMALTATADQ 186
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
T +++ L I L+ R N++ +V+ N R + + + SS Y
Sbjct: 187 ATRQNICERLGINPFKLLSSFD-RPNIRYTVAEKLNAANQLRQFLLQQ----NGSSGIVY 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
D ++ L K+YH+G+ ++R +Q+ F ++I +VVATVAFGM
Sbjct: 242 ----CSSRRRVDEVAERLTLQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATVAFGM 297
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
G++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 298 GINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLI 351
>gi|152975682|ref|YP_001375199.1| ATP-dependent DNA helicase RecQ [Bacillus cytotoxicus NVH 391-98]
gi|152024434|gb|ABS22204.1| ATP-dependent DNA helicase RecQ [Bacillus cytotoxicus NVH 391-98]
Length = 706
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 198/335 (59%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VLD K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 9 LLSSYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 69 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 128
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 129 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPIVLALTATATPQVREDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
AL+I ++ I R+NL SV + G + R+AY+ E ++ K I+ +
Sbjct: 187 CRALDIDPTHTIMTTFERENLSFSV-IKGQD----RNAYLKEY--IRQNQKESGIIYAAT 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +SV YH+G+ +R QE F +++ V+VAT AFGMG+DK +
Sbjct: 240 RKV-VDQLYEELSKAGVSVARYHAGMSDYERDEQQERFLRDEVSVMVATSAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 299 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 333
>gi|227893520|ref|ZP_04011325.1| ATP-dependent helicase [Lactobacillus ultunensis DSM 16047]
gi|227864690|gb|EEJ72111.1| ATP-dependent helicase [Lactobacillus ultunensis DSM 16047]
Length = 588
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 149/404 (36%), Positives = 216/404 (53%), Gaps = 35/404 (8%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N +L+ +GYD FR GQ + I +VL+K++ + V+PTGAGKS+CYQ+PA++ G+TLV+
Sbjct: 2 NSEEVLKQTFGYDHFRPGQKKVIDLVLNKQNVLAVMPTGAGKSVCYQVPALMNSGVTLVI 61
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I+ L+S+ EEV +R G IK+++++PER L D+
Sbjct: 62 SPLISLMKDQIDSLKQNGINAAALNSATPQEEVNPILRQAYQGKIKLIYITPER-LAMDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
I LV VDEAHC+S+W H+FRP+Y +L + L+++ N ILA+TATAT
Sbjct: 121 FRYQLNFLDIDLVAVDEAHCISQWGHDFRPAYRQLLEGINSLKSKPN---ILALTATATP 177
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L IP N + + R NL V S N Y+ + H
Sbjct: 178 AVQDDIGEQLNIPKENFVITSFARPNLSFKVVNSPQNT----PLYIAKYIKAHEGEAGIV 233
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
K + ++ YL ISV +YH G+ +K+R IQE F ++ +V+VAT AFGM
Sbjct: 234 YTNTRKK---VESLTDYLAKKGISVGAYHGGMDSKERDEIQEAFQFDRFQVIVATNAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRL-------- 534
G+DK +V VIH S ++E Y QE GRAGRDG S + D+ +R
Sbjct: 291 GIDKSNVRFVIHASSARNIESYYQEAGRAGRDGEESEAIMIYHPGDLRQYRFFIDESEAD 350
Query: 535 ---RSLMYS--DGVDEYA-----INKFLCQVFTNGMNSHGKLCS 568
R L Y + +YA + +F+ Q F GK CS
Sbjct: 351 EKYRELQYQKLQAITDYANTGECLQQFIVQYFGQDCKPCGK-CS 393
>gi|268680155|ref|YP_003304586.1| ATP-dependent DNA helicase RecQ [Sulfurospirillum deleyianum DSM
6946]
gi|268618186|gb|ACZ12551.1| ATP-dependent DNA helicase RecQ [Sulfurospirillum deleyianum DSM
6946]
Length = 596
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/329 (40%), Positives = 205/329 (62%), Gaps = 15/329 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+G+ FR Q EA+ +L K M++LPTGAGKSLCYQ+P++++ GL++V+ PL+
Sbjct: 7 ILQRVFGHHHFRANQEEAVNAILAHKDLMMILPTGAGKSLCYQLPSLVMEGLSVVISPLL 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I +SS Q P+E+ E+++ + G +K+L+V+PER FL F
Sbjct: 67 ALMHDQITALSAFGIKASMISSMQSPQEIQESMQACRKGELKLLYVAPERLKGESFLH-F 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
T I+ V+DEAHCVSEW H FR Y +L L+ I A TATAT D+
Sbjct: 126 LQTLCINFFVIDEAHCVSEWGHEFREDYRQLFR--LKHYFPKTPIAAFTATATKIVEHDI 183
Query: 371 MSALEIPLSNLIQKAQL-RDNLQLSVSL-SGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+ L + ++ LI +A++ R+NL + +GN R +++ SF R+ ++ +
Sbjct: 184 LQQLSL-INPLIIRAKVERENLTIKADYRNGNGR--------EQLLSFLRAFQNESGIIY 234
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ ET+ ++ +L S+ V++YH+G+ ++++ F +++I VVVATVAFGMG+DK
Sbjct: 235 TLTRKETESLALFLQGYSMRVRAYHAGLCTEEKNETYHAFLNDEIDVVVATVAFGMGIDK 294
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
++ V H SLP++LE Y QEIGRAGRDG
Sbjct: 295 SNIRFVAHMSLPKTLENYYQEIGRAGRDG 323
>gi|293377511|ref|ZP_06623707.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium PC4.1]
gi|292643880|gb|EFF61994.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium PC4.1]
Length = 599
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+P+++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDKFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPSLLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDDYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A L N I+A+TATAT D+
Sbjct: 124 NRWN-VCMIDIDEAHCISQWGHDFRPSYLQM-AKQLNQLPNRPVIVALTATATIQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPDGNHIQTGFERENLRFQVV-----KDQKKEQYLVEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L S+ YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRIYHLLKKFGFSIGRYHGGLNENERTAMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|424766895|ref|ZP_18194235.1| ATP-dependent DNA helicase RecQ [Enterococcus faecalis TX1337RF]
gi|402409925|gb|EJV42341.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium TX1337RF]
Length = 653
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 205/351 (58%), Gaps = 13/351 (3%)
Query: 168 SELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGA 227
++L E + R+ + N LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+
Sbjct: 36 ADLSFGENRSKMARERSGKMN--DLLKQYFGYDKFRPGQKEIIQKVIDQENVLGIMPTGS 93
Query: 228 GKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI 286
GKS+CYQ+P+++L GLT+VV PL++LM DQ+ + I F++SS E A + I
Sbjct: 94 GKSICYQLPSLLLDGLTVVVSPLISLMKDQVDAANQLGIPATFINSSLDGYETARRFQEI 153
Query: 287 QVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLL 346
++L+++PERF+ DF+ + + ++ +DEAHC+S+W H+FRPSY+++ A L
Sbjct: 154 DRQQYRLLYIAPERFIMPDFIQAMNRWN-VCMIAIDEAHCISQWGHDFRPSYLQM-AKQL 211
Query: 347 RARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNER 406
N I+A+TATAT D+ L+IP N IQ R+NL+ V + ++
Sbjct: 212 NQLPNRPVIVALTATATIQVAADIKRLLKIPDGNHIQTGFERENLRFQVV-----KDQKK 266
Query: 407 SAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQE 466
Y+ E +++ + + E D I L S+ YH G+ +R+ +QE
Sbjct: 267 EQYLVEYLKINKNQSG---IIYAATRKEVDRIYHLLKKFGFSIGRYHGGLNENERTAMQE 323
Query: 467 LFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
F ++++++ AT AFGMG++K +V VIHY +P SLE Y QE GRAGRDG
Sbjct: 324 AFLYDRLQLIAATNAFGMGINKSNVRFVIHYQIPGSLEAYYQEAGRAGRDG 374
>gi|358051581|ref|ZP_09145765.1| ATP-dependent DNA helicase RecQ [Staphylococcus simiae CCM 7213]
gi|357258915|gb|EHJ08788.1| ATP-dependent DNA helicase RecQ [Staphylococcus simiae CCM 7213]
Length = 592
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 199/341 (58%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GYD FR GQ E I V++ ++ + VLPTG GKS+CYQ+P ++L G T+V+
Sbjct: 1 MQQTLSHYFGYDQFRPGQEEIITRVINHQNVLGVLPTGGGKSICYQVPGLMLGGTTIVIS 60
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I+ +L+SS +E +Q G I+ L+V+PERF N F+
Sbjct: 61 PLISLMKDQVDQLKAMGINAAYLNSSLTQKEQQRIENELQQGTIQFLYVAPERFENRFFV 120
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ + + I L+ DEAHC+S+W H+FRPSY + + + I+A+TATATT
Sbjct: 121 NLLSHIN-IHLIAFDEAHCISKWGHDFRPSYQNVITKVFTLPQDF-TIVALTATATTEVQ 178
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+ L I L N I+ + R NL V N +R +V + HR I+
Sbjct: 179 QDIRQKLNISLDNEIKTSTKRHNLIFKV-----NPTYQRQKFVLDYVQQHRDEAG--IVY 231
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L + +I YH+G+ K+R + Q F ++++VV+AT AFGMG+D
Sbjct: 232 CSTRK-QVEELQEALQNQNIKSSIYHAGLSNKEREQAQNDFVYDRVKVVIATNAFGMGID 290
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P +E Y QE GRAGRDG S C L +
Sbjct: 291 KSNVRFVIHYNMPGDIESYYQEAGRAGRDGLKSECILLFSE 331
>gi|431070842|ref|ZP_19494297.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1604]
gi|431102803|ref|ZP_19496914.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1613]
gi|430567544|gb|ELB06622.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1604]
gi|430570307|gb|ELB09274.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E1613]
Length = 590
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+P+++L G+T+VV PL+
Sbjct: 4 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPSLLLDGITVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A L N I+A+TATAT D+
Sbjct: 124 NRWN-VCMIAIDEAHCISQWGHDFRPSYLQM-AKQLDQLPNRPVIVALTATATIQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPDGNHIQTGFGRENLRFQVV-----KDQKKEQYLVEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L S+ YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRIYHLLKKFGFSIGRYHGGLKENERTAMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|331002791|ref|ZP_08326305.1| ATP-dependent DNA helicase RecQ [Lachnospiraceae oral taxon 107
str. F0167]
gi|330413280|gb|EGG92648.1| ATP-dependent DNA helicase RecQ [Lachnospiraceae oral taxon 107
str. F0167]
Length = 616
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GYDSFR GQ I +L+ + + V+PTGAGKSLCYQ+PAM+L G+TLV+ PL++
Sbjct: 16 LKAVFGYDSFRQGQESVINAILEGRDILAVMPTGAGKSLCYQVPAMLLSGITLVISPLIS 75
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ++ L + F++SS +E+ +T + G K+++V+PER ++ F+S+
Sbjct: 76 LMQDQVKALNEAGVDAAFINSSLYEKELNDTFKNAYKGYYKIIYVAPERLMSEGFISLAK 135
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ IS++ VDEAHC+S+W +FRPSYM + A + I A TATAT D++
Sbjct: 136 SIE-ISMITVDEAHCISQWGQDFRPSYMDI-AEFINILGKRPIISAFTATATQNVREDII 193
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+L + + R+NL V ++ + ++ + HR I+ + +
Sbjct: 194 CSLGLSDPYFLVTGFDRENLFFQV-----DKPQNKDRFILDYIERHRGESG--IIYCATR 246
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
D + L ISV YH+G+ K+R ++Q+ F + +V+AT AFGMG+DK +V
Sbjct: 247 K-NVDSLYTLLRKQHISVAKYHAGMSNKERKQMQDDFVFDYTSIVIATNAFGMGIDKSNV 305
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
VIHY++P S+E Y QE GRAGRDG S C L
Sbjct: 306 RFVIHYNMPSSMENYYQEAGRAGRDGLNSECILLF 340
>gi|323490303|ref|ZP_08095518.1| ATP-dependent DNA helicase RecQ [Planococcus donghaensis MPA1U2]
gi|323395973|gb|EGA88804.1| ATP-dependent DNA helicase RecQ [Planococcus donghaensis MPA1U2]
Length = 591
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 200/337 (59%), Gaps = 11/337 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E+ +LL+ +GY+SFR GQ +AI V + +++ V+PTG GKS+CYQIPA+++ G T+V
Sbjct: 3 ESAKKLLQSHFGYESFRVGQEQAITQVFEGHNSICVMPTGGGKSMCYQIPALVMEGTTIV 62
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL++LM DQ+ L I +++SS +EV ET+ +Q GAIK+L+++PER +
Sbjct: 63 VSPLISLMKDQVDALLAAGIPAAYINSSLDFDEVRETLMDVQRGAIKLLYIAPERLDSEM 122
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
FL+ + L+ VDEAHC+S+W H+FRPSY RL + + N +LA+TATAT
Sbjct: 123 FLNELQGVH-VPLIAVDEAHCISQWGHDFRPSY-RLISRMTELFPNNPTVLALTATATPQ 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D+ L I + + R NL SV R +R +V E + ++ K I
Sbjct: 181 VREDICRILNIEEQHTVMTGFERANLTFSVV-----RGQDRERFVKEYVA--KNDKEAGI 233
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ + + D + L I YH+G+ +R QE F ++++ V+VAT AFGMG
Sbjct: 234 IYAATRK-TVDSVYEMLIKKGIKAAKYHAGMSDHERKTGQERFLNDEVTVMVATNAFGMG 292
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+DK ++ VIHY +P+++E Y QE GRAGRDG S C
Sbjct: 293 IDKSNIRFVIHYQVPKNMESYYQEAGRAGRDGLPSEC 329
>gi|352516332|ref|YP_004885649.1| ATP-dependent DNA helicase RecQ [Tetragenococcus halophilus NBRC
12172]
gi|348600439|dbj|BAK93485.1| ATP-dependent DNA helicase RecQ [Tetragenococcus halophilus NBRC
12172]
Length = 592
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 201/322 (62%), Gaps = 12/322 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ SFR GQ I+ +L++++ + ++PTG GKS+CYQ+PA++L GLTLV+ PL++LM D
Sbjct: 20 FGFTSFRRGQEAIIQKILNQENVLGIMPTGGGKSICYQLPALLLDGLTLVISPLISLMKD 79
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I F++SS E+ + + + G IK+L+++PER + +FL + T
Sbjct: 80 QVDSLNDMGIPATFINSSLSYLEINQRLDDTKKGRIKLLYIAPERLESEEFLRLL-ETVQ 138
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ VDEAHC+S+W H+FRPSY++L A ++++ + ++A+TATAT +D+ L
Sbjct: 139 IDLLAVDEAHCISQWGHDFRPSYLKL-AQMIQSLKQLPTVVALTATATQQVAQDISQLLS 197
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
IP N I R+NL V + ++ +Y+ F++ +++K+ + + E
Sbjct: 198 IPEQNQINTGFARENLAFQVV------KEQKDSYL---FTYLKTNKNQSGIIYATTRKEV 248
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + R L N SV YH G+ K R++ QE F + +V+VAT AFGMG++K +V VI
Sbjct: 249 ERLYRLLRHNDFSVGMYHGGMDKKQRAKSQEDFLFERTQVIVATNAFGMGINKSNVRFVI 308
Query: 496 HYSLPESLEEYVQEIGRAGRDG 517
H +P ++E Y QE GRAGRDG
Sbjct: 309 HAQIPGNIESYYQEAGRAGRDG 330
>gi|402832959|ref|ZP_10881582.1| ATP-dependent DNA helicase RecQ [Selenomonas sp. CM52]
gi|402281702|gb|EJU30328.1| ATP-dependent DNA helicase RecQ [Selenomonas sp. CM52]
Length = 593
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 131/345 (37%), Positives = 201/345 (58%), Gaps = 14/345 (4%)
Query: 186 DENLGRLLRLV---YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
++N R L+++ +GY SFR Q +K +L+ + T+ ++PTGAGKS+C+Q+PA++LPG
Sbjct: 3 EQNFARALQILQQTFGYKSFRPAQETVVKSLLEGRETVAIMPTGAGKSICFQVPALLLPG 62
Query: 243 LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
+TLV+ PL++LM DQ+ L F++SS E E R I GA K+++V+PER
Sbjct: 63 VTLVISPLISLMKDQVDALAEAGAPATFINSSLGQAEARERFRAIAQGAYKIVYVAPER- 121
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L DF +S + +DEAHC+S+W H+FRPSY R A + I A TAT
Sbjct: 122 LETDFFQSLLQEQTVSFIAIDEAHCLSQWGHDFRPSY-RAIAPFIERLPKRPLIGAFTAT 180
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
AT D++S L + + R NL V L+G +R+ D + ++ R+ +
Sbjct: 181 ATPRVKDDIISLLALRRPAVHVAGFDRPNLFFGV-LTGVDRK-------DFIANYLRTHR 232
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
+ ETD +SR+L +V+ YH+G+ ++RS+ Q+ F + ++ +VAT A
Sbjct: 233 EEAGIIYCATRKETDAVSRFLQQKKFAVRPYHAGLIDEERSKAQDDFLYDNVQAIVATNA 292
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
FGMG+DK +V VIHY++P+++E Y QE GRAGRDG C L
Sbjct: 293 FGMGIDKSNVRFVIHYNMPKNIESYYQEAGRAGRDGEPGECILLF 337
>gi|402311655|ref|ZP_10830592.1| ATP-dependent DNA helicase RecQ [Lachnospiraceae bacterium ICM7]
gi|400371303|gb|EJP24264.1| ATP-dependent DNA helicase RecQ [Lachnospiraceae bacterium ICM7]
Length = 616
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GYDSFR GQ I +LD + + V+PTGAGKSLCYQ+PAM+ G+TLV+ PL++
Sbjct: 16 LKAVFGYDSFRPGQEAVINAILDGRDILAVMPTGAGKSLCYQVPAMLFSGITLVISPLIS 75
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ++ L ++ F++SS +E+ +T + G K+++V+PER ++ F+S F
Sbjct: 76 LMQDQVKALNEAGVNAAFINSSLSEKELNDTFKNAYKGHYKIIYVAPERLMSEGFIS-FA 134
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ IS+V VDEAHC+S+W +FRPSYM + A + I A TATAT D++
Sbjct: 135 KSVEISMVTVDEAHCISQWGQDFRPSYMDI-AEFINILDKRPIISAFTATATQNVREDII 193
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+L + + R+NL V ++ + ++ + HR I+ + +
Sbjct: 194 CSLGLNNPYFLVTGFDRENLFFQV-----DKPQNKERFILDFIERHRGESG--IIYCATR 246
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
D + L ISV YH+G+ ++R ++Q F + +V+AT AFGMG+DK +V
Sbjct: 247 K-NVDSLYTLLRKQHISVGKYHAGMSNEERKQMQNDFVFDYTSIVIATNAFGMGIDKSNV 305
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
VIHY++P S+E Y QE GRAGRDG S C L
Sbjct: 306 RFVIHYNMPSSMENYYQEAGRAGRDGLNSECILLF 340
>gi|256083898|ref|XP_002578172.1| hypothetical protein [Schistosoma mansoni]
Length = 1108
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 207/725 (28%), Positives = 330/725 (45%), Gaps = 129/725 (17%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVAL 253
G++SFR GQ I L ST+ V+PT GKSLCYQIPA+I + LV+ PL++L
Sbjct: 370 GFESFRPGQELVILRTLLGISTLAVMPTAFGKSLCYQIPALIHQQVYKTVALVISPLISL 429
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQ+ +HG FL+SSQ + E + G L +SPE +++D++
Sbjct: 430 MEDQVIQPISGLHGTFLNSSQSVDRKKEILEEAHRGKYSFLMLSPEAIVDSDWMLQSGRL 489
Query: 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT--------TT 365
IS V +DEAHC+++WS++FRPSY+R+ +LLR + V C L + T
Sbjct: 490 PPISFVCIDEAHCLADWSNHFRPSYLRV-CNLLRKYMGVNCFLDVITNICNNLGIHNPTR 548
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D ++ + +Q L++S S +++++E + F+R + I
Sbjct: 549 FVGDTINETTLHQPGYVQPVLTPLPPHLTISASMDDKKDEALLKLLTRKPFNRLTGG--I 606
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
L ET+ ++ Y + +YH+G +RSRIQ+ F S KIRV++AT AFGMG
Sbjct: 607 LIYCATREETEHLASY-------IPAYHAGQTTSERSRIQKKFMSGKIRVLIATCAFGMG 659
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL------DDITYFRLRSLMY 539
L+K D+ AVIH+SL +S E YVQEIGR GR ++SYCH FL D +R ++
Sbjct: 660 LNKSDLQAVIHFSLTKSFENYVQEIGRVGRQQQVSYCHAFLPSSLMSDPHEANYIRRHIF 719
Query: 540 SDGVDEYAINKFLCQVFT--------------NGMNSHGKLCSLVKESASRKFDIKEEVM 585
++ +D + + L +F N ++ G + ++ S + DIK E +
Sbjct: 720 ANHLDAVLLKRLLGLIFKDFHCTCRFVENHKENPVSCQGHVHAIDLRVISEQIDIKPESL 779
Query: 586 LTLLTCLELGEIQ-YLQLLPELKVTCTLNFHKTTPTLLADKDKMVA-----TILKKSETK 639
T+L +EL + LL T++ + + + +A ++ K +TK
Sbjct: 780 ATILAYIELEPGNPIISLLHSGYAMATVHCYGGQQEMAYACQRCLAVSGALSLWKSEQTK 839
Query: 640 QGQYV--------FDIPTVANSIGATTIDVSNQLLNLKM---RGEITYELKDPAYCYTIV 688
Q + ++P + N G V +L L+ + T E AY T +
Sbjct: 840 DTQTINEYPRQLTLNLPQLFNRWGWKPNVVKQELKKLEWDYSKRNNTTEASSKAY-RTGI 898
Query: 689 EVPSDFCALSAHLTKWL----SEV-------ENCKVRKLDRMFHAAVFAVDVCEKTHGCN 737
+ DF +H + WL SEV + C +R+ A A+ E+
Sbjct: 899 NI--DF----SHWSSWLWIHGSEVPITNERLDTCLTYLNNRLQQAEEAALLSIEQLTLAL 952
Query: 738 GSLHTPCLQ------------------------------KNILDYFRG------DD---- 757
G++ PCLQ + I +F G DD
Sbjct: 953 GAVAQPCLQDIYPEETNDDLESPKPACKKYSEQWSSVVHEIIKSHFAGTKSNLRDDKLAL 1012
Query: 758 --NCD---------VPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYP 806
NC +I Q +R + ++ +S+L+ K T R +A I HGI++P +P
Sbjct: 1013 IENCQSRYHWPTVVTDTQIAQVQTTVRNFVHIY-ESSLDRKITGRTIANIFHGISTPHFP 1071
Query: 807 STIWS 811
+T WS
Sbjct: 1072 ATTWS 1076
>gi|350646239|emb|CCD59073.1| hypothetical protein Smp_069600 [Schistosoma mansoni]
Length = 1108
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 207/725 (28%), Positives = 330/725 (45%), Gaps = 129/725 (17%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVAL 253
G++SFR GQ I L ST+ V+PT GKSLCYQIPA+I + LV+ PL++L
Sbjct: 370 GFESFRPGQELVILRTLLGISTLAVMPTAFGKSLCYQIPALIHQQVYKTVALVISPLISL 429
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313
M DQ+ +HG FL+SSQ + E + G L +SPE +++D++
Sbjct: 430 MEDQVIQPISGLHGTFLNSSQSVDRKKEILEEAHRGKYSFLMLSPEAIVDSDWMLQSGRL 489
Query: 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT--------TT 365
IS V +DEAHC+++WS++FRPSY+R+ +LLR + V C L + T
Sbjct: 490 PPISFVCIDEAHCLADWSNHFRPSYLRV-CNLLRKYMGVNCFLDVITNICNNLGIHNPTR 548
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+ D ++ + +Q L++S S +++++E + F+R + I
Sbjct: 549 FVGDTINETTLHQPGYVQPVLTPLPPHLTISASMDDKKDEALLKLLTRKPFNRLTGG--I 606
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
L ET+ ++ Y + +YH+G +RSRIQ+ F S KIRV++AT AFGMG
Sbjct: 607 LIYCATREETEHLASY-------IPAYHAGQTTSERSRIQKKFMSGKIRVLIATCAFGMG 659
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL------DDITYFRLRSLMY 539
L+K D+ AVIH+SL +S E YVQEIGR GR ++SYCH FL D +R ++
Sbjct: 660 LNKSDLQAVIHFSLTKSFENYVQEIGRVGRQQQVSYCHAFLPSSLMSDPHEANYIRRHIF 719
Query: 540 SDGVDEYAINKFLCQVFT--------------NGMNSHGKLCSLVKESASRKFDIKEEVM 585
++ +D + + L +F N ++ G + ++ S + DIK E +
Sbjct: 720 ANHLDAVLLKRLLGLIFKDFHCTCRFVENHKENPVSCQGHVHAIDLRVISEQIDIKPESL 779
Query: 586 LTLLTCLELGEIQ-YLQLLPELKVTCTLNFHKTTPTLLADKDKMVA-----TILKKSETK 639
T+L +EL + LL T++ + + + +A ++ K +TK
Sbjct: 780 ATILAYIELEPGNPIISLLHSGYAMATVHCYGGQQEMAYACQRCLAVSGALSLWKSEQTK 839
Query: 640 QGQYV--------FDIPTVANSIGATTIDVSNQLLNLKM---RGEITYELKDPAYCYTIV 688
Q + ++P + N G V +L L+ + T E AY T +
Sbjct: 840 DTQTINEYPRQLTLNLPQLFNRWGWKPNVVKQELKKLEWDYSKRNNTTEASSKAY-RTGI 898
Query: 689 EVPSDFCALSAHLTKWL----SEV-------ENCKVRKLDRMFHAAVFAVDVCEKTHGCN 737
+ DF +H + WL SEV + C +R+ A A+ E+
Sbjct: 899 NI--DF----SHWSSWLWIHGSEVPITNERLDTCLTYLNNRLQQAEEAALLSIEQLTLAL 952
Query: 738 GSLHTPCLQ------------------------------KNILDYFRG------DD---- 757
G++ PCLQ + I +F G DD
Sbjct: 953 GAVAQPCLQDIYPEETNDDLESPKPACKKYSEQWSSVVHEIIKSHFAGTKSNLRDDKLAL 1012
Query: 758 --NCD---------VPNKIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYP 806
NC +I Q +R + ++ +S+L+ K T R +A I HGI++P +P
Sbjct: 1013 IENCQSRYHWPTVVTDTQIAQVQTTVRNFVHIY-ESSLDRKITGRTIANIFHGISTPHFP 1071
Query: 807 STIWS 811
+T WS
Sbjct: 1072 ATTWS 1076
>gi|431756463|ref|ZP_19545095.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E3083]
gi|431761716|ref|ZP_19550278.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E3548]
gi|430620317|gb|ELB57119.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E3083]
gi|430624408|gb|ELB61058.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E3548]
Length = 599
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 196/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+P+++L GLT+VV PL+
Sbjct: 4 LLKQYFGYDKFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPSLLLDGLTVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A L N I+A+TATAT D+
Sbjct: 124 NRWN-VCMIAIDEAHCISQWGHDFRPSYLQM-AKQLNQLPNRPVIVALTATATIQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPDGNHIQTGFERENLRFQVV-----KDQKKEQYLVEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L S+ YH G+ +R+ +QE F ++++++ AT AFGMG++K +
Sbjct: 234 TRKEVDRIYHLLKKFGFSIGRYHGGLNENERTAMQEAFLYDRLQLIAATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|152998934|ref|YP_001364615.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS185]
gi|151363552|gb|ABS06552.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS185]
Length = 607
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 209/357 (58%), Gaps = 13/357 (3%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
+ D+ L + L V+GY FRDGQ E I+ V + ++++PTG GKSLCYQ+PA+++ G
Sbjct: 7 DTHDDPLSQRLAQVFGYRDFRDGQREVIERVCGGQDCLVIMPTGGGKSLCYQLPALLMDG 66
Query: 243 LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
+T+VV PL++LM DQ+ L + +L+SS E+ AE +R ++ G +K+L+VSPER
Sbjct: 67 ITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLYVSPERL 126
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L+ADF+ + L ++ +DEAHC+S+W H+FRP Y L L+ ++A+TAT
Sbjct: 127 LSADFIERMQSLQL-AMFAIDEAHCISQWGHDFRPEYAAL--GQLKQLFPYVPMMALTAT 183
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
A T + + L I L+ R N++ +V+ N R F ++
Sbjct: 184 ADQATRQSICERLGIDPFRLLSSFD-RPNIRYTVAEKLNAANQLRH------FLTQQNGT 236
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
+ I S + D ++ LC + K+YH+G+ +DRS +Q+ F ++I +VVATVA
Sbjct: 237 NGIIYCSSRRR--VDEVADRLCLQGFNAKAYHAGMTQEDRSAVQDSFLKDQIDIVVATVA 294
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
FGMG++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 295 FGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLI 351
>gi|284006614|emb|CBA71875.1| ATP-dependent DNA helicase [Arsenophonus nasoniae]
Length = 608
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/354 (37%), Positives = 206/354 (58%), Gaps = 30/354 (8%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ ++GY FR GQ + I +L K+ ++V+PTG GKSLCYQIPA+ILPGLT+VV PL
Sbjct: 15 QVLQQIFGYQQFRPGQEQIINTILTKQDCLVVMPTGGGKSLCYQIPALILPGLTIVVSPL 74
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +L+SSQ ++ + I + G IK+L+++PER + +FL
Sbjct: 75 ISLMKDQVDQLSQYGIEASYLNSSQTGQQQKQVIEYCRQGKIKLLYIAPERLVMDNFLDR 134
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ + L+ VDEAHC+S+W H+FRP Y L LR R + ++A+TATA TT D
Sbjct: 135 LPKLNPV-LLAVDEAHCISQWGHDFRPEYRAL--GQLRRRFSQLPVIALTATADQTTRND 191
Query: 370 VMSALEI--PLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV------DEVFSFHRSSK 421
++ LE+ PL V +S +R N R V D+++ F + K
Sbjct: 192 IIHGLELCEPL----------------VHISSFDRPNIRYTLVEKYKPLDQLWFFIKGQK 235
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
+ + + + L +S +YH+G+ R+++Q+ F + ++VVVATVA
Sbjct: 236 GNSGIVYCNSRSKAEETAERLHKRGLSAAAYHAGLDNTQRAKVQDAFQKDDLQVVVATVA 295
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
FGMG++K +V V+H+ + ++E Y QE GRAGRDG + LF D D+++ R
Sbjct: 296 FGMGINKSNVRFVVHFDIARNIESYYQETGRAGRDGLAAEAILFYDPADLSWLR 349
>gi|299537110|ref|ZP_07050413.1| ATP-dependent DNA helicase recQ [Lysinibacillus fusiformis ZC1]
gi|424737420|ref|ZP_18165873.1| ATP-dependent DNA helicase recQ [Lysinibacillus fusiformis ZB2]
gi|298727351|gb|EFI67923.1| ATP-dependent DNA helicase recQ [Lysinibacillus fusiformis ZC1]
gi|422948702|gb|EKU43080.1| ATP-dependent DNA helicase recQ [Lysinibacillus fusiformis ZB2]
Length = 590
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 196/340 (57%), Gaps = 11/340 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E ++L+ +GYD+FR GQ + I+ L +S++ V+PTG GKS+CYQIPA++L GLT+V
Sbjct: 2 EQARQMLQHHFGYDTFRQGQAQIIEQTLRGQSSLCVMPTGGGKSICYQIPALMLEGLTIV 61
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL++LM DQ+ L I +++S+ +EV ET++L G +K+L+++PER +
Sbjct: 62 ISPLISLMQDQVEALRTANIPAAYINSTLSAQEVDETMQLASAGYLKLLYIAPERLESTT 121
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
FL + S + L+ +DEAHC+S+W H+FRPSY + L +LA+TATAT T
Sbjct: 122 FLQALSYLS-VPLLAIDEAHCISQWGHDFRPSYRSIH-KLFTLWPQKPTVLALTATATPT 179
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D+ L I + R+NL LSV L G N++ YV + +K
Sbjct: 180 VCDDIRQLLAIDEQATVMTGFSRENLALSV-LIGENKERYVKNYVQQ-------NKQEVG 231
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ + D I L + V YH+G+ R QE F ++ R++VAT AFGMG
Sbjct: 232 IIYAATRKAVDAIYDVLSRSGEDVAKYHAGLSENLRMAEQERFLKDEARIMVATNAFGMG 291
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+DK +V V+HY +P ++E Y QE GRAGRDG S C L
Sbjct: 292 IDKSNVRFVLHYQMPRNMESYYQEAGRAGRDGLPSACILL 331
>gi|373470892|ref|ZP_09561979.1| ATP-dependent DNA helicase RecQ [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371761514|gb|EHO50132.1| ATP-dependent DNA helicase RecQ [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 616
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 196/335 (58%), Gaps = 11/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GYDSFR GQ I +L+ + + V+PTGAGKSLCYQ+PAM+L G+TLV+ PL++
Sbjct: 16 LKAVFGYDSFRPGQEAVINAILEGRDILAVMPTGAGKSLCYQVPAMLLSGITLVISPLIS 75
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ++ L ++ F++SS +E+ +T + G K+++V+PER ++ F+S F
Sbjct: 76 LMQDQVKALNEAGVNAAFINSSLSEKELNDTFKNAYKGHYKIIYVAPERLMSEGFIS-FA 134
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ IS+V VDEAHC+S+W +FRPSYM + A + I A TATAT D++
Sbjct: 135 KSVEISMVTVDEAHCISQWGQDFRPSYMDI-AEFINILDKRPIISAFTATATQNVREDII 193
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+L + + R+NL V ++ + ++ + HR I+ + +
Sbjct: 194 CSLGLSDPYFLVTGFDRENLFFQV-----DKPQNKERFILDFIERHRGESG--IIYCATR 246
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
D + L ISV YH+G+ ++R ++Q F + +V+AT AFGMG+DK +V
Sbjct: 247 K-NVDSLYTLLRKQHISVGKYHAGMSNEERKQMQNDFVFDYTSIVIATNAFGMGIDKSNV 305
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
VIHY++P S+E Y QE GRAGRDG S C L
Sbjct: 306 RFVIHYNMPSSMENYYQEAGRAGRDGLNSECILLF 340
>gi|161507492|ref|YP_001577446.1| ATP-dependent DNA helicase RecQ [Lactobacillus helveticus DPC 4571]
gi|160348481|gb|ABX27155.1| ATP-dependent DNA helicase RecQ [Lactobacillus helveticus DPC 4571]
Length = 599
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 135/336 (40%), Positives = 199/336 (59%), Gaps = 14/336 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N ++L+ +GY SFR GQ + I ++L++K+ + V+PTGAGKSLCYQ+PA++ G+TLV+
Sbjct: 11 NPEKILKQTFGYSSFRPGQKKVIDLILNRKNVLAVMPTGAGKSLCYQVPALMNEGVTLVI 70
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I+ L+S+ EEV +R G IK+++++PER L D+
Sbjct: 71 SPLISLMKDQIDSLKQNGINAAALNSTTLQEEVNPILRQAYEGKIKLIYITPER-LAMDY 129
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
+ LV VDEAHC+S+W H+FRP+Y ++ + L+++ ILA+TATAT
Sbjct: 130 FRYQLNFLDVDLVAVDEAHCISQWGHDFRPAYRQIFEGINSLKSK---PTILALTATATP 186
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L IP N I + R N+ V S N Y+ + H
Sbjct: 187 AVQDDIGQQLNIPQENFIITSFARPNISFKVVNSPQNTH----LYIAQYIKAHPDDAGI- 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I + K E+ ++ YL ISV +YH G+ AK+RS+IQE F ++ +V+VAT AFGM
Sbjct: 242 IYTNTRKKVES--LTDYLAKKGISVGAYHGGMDAKERSQIQEAFQFDEFQVIVATNAFGM 299
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLS 520
G+DK +V V+H S ++E Y QE GRAGRDG S
Sbjct: 300 GIDKSNVRFVVHASSARNIESYYQEAGRAGRDGEES 335
>gi|304407435|ref|ZP_07389087.1| ATP-dependent DNA helicase RecQ [Paenibacillus curdlanolyticus YK9]
gi|304343386|gb|EFM09228.1| ATP-dependent DNA helicase RecQ [Paenibacillus curdlanolyticus YK9]
Length = 743
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 135/341 (39%), Positives = 194/341 (56%), Gaps = 11/341 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E RLL+ VYGYDSFR GQ I +++ T+ +LPTG GKS+CYQIPA+++ G TLV
Sbjct: 3 EQARRLLKQVYGYDSFRKGQEAIIGGIMEGTDTLAILPTGGGKSICYQIPALLMDGTTLV 62
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL++LM DQ+ L V + FL+SS + + +R G K+L+V+PER L+A
Sbjct: 63 VSPLISLMKDQVDALNRVGVKAAFLNSSLSAVDYRDVMRQAFQGEYKLLYVAPER-LDAP 121
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
+ + I L+ +DEAHCVS+W H+FRPSY +L + R + N + A TATAT
Sbjct: 122 MFASLSEQMHIPLIAIDEAHCVSQWGHDFRPSYRQLAGWINRMQ-NRPLVAAFTATATQE 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
RD+ L + + RDNL LSV + + A++ + S R+ + +
Sbjct: 181 VSRDISDMLGLRHPKVHVTGFARDNLSLSVVTGAD-----KPAFLRKFMS-ERTDQSGIV 234
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ K ET+ + L + YH G+ +R+ QE F + +RV+VAT AFGMG
Sbjct: 235 YTATRK--ETEQVHALLAKQGVPAGKYHGGLADAERAEAQEKFRFDDVRVMVATNAFGMG 292
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+DK +V V+H+ +P +E Y QE GRAGRDG S C L
Sbjct: 293 IDKPNVRFVLHWQMPGDVESYYQEAGRAGRDGEESECILLF 333
>gi|17227701|ref|NP_484249.1| ATP-dependent DNA helicase [Nostoc sp. PCC 7120]
gi|17135183|dbj|BAB77729.1| ATP-dependent DNA helicase [Nostoc sp. PCC 7120]
Length = 718
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 199/351 (56%), Gaps = 30/351 (8%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL + L+ +GYD+FR GQ + I+ L + M+V+PTG GKSLC+Q+PA++ GLT+VV
Sbjct: 6 NLEQALKYHFGYDNFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQGLTVVV 65
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQ+ L I FL+SS +V I G +++L+V+PER L+ F
Sbjct: 66 SPLIALMQDQVEALRNNNISATFLNSSLNAYQVRSREEAILNGKVRLLYVAPERLLSERF 125
Query: 307 LSIFTATSL---ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
L IS+ +DEAHCVSEW H+FRP Y +L++ LR R +LA+TATAT
Sbjct: 126 LPFLDLVKEKVGISIFAIDEAHCVSEWGHDFRPEYRQLKS--LRKRYPNVPVLALTATAT 183
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN--------ERSAYVDEVFS 415
D++ L + Q S+ L+ NRQN + AY + +
Sbjct: 184 DRVRADIIQQLGLK--------------QPSIHLASFNRQNLYYEVRPKSKQAYAELLEL 229
Query: 416 FHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
+ I ++ K E ++ L + IS SYH+G+P +RS+ Q F + +RV
Sbjct: 230 IRDNEGSTIIYCLTRKKVEE--LTFKLQKDKISALSYHAGLPDDERSKNQTRFIRDDVRV 287
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+VAT+AFGMG++K DV V+H+ +P +LE Y QE GRAGRDG S C +F
Sbjct: 288 MVATIAFGMGINKPDVRLVVHFDIPRNLESYYQESGRAGRDGEASRCTIFF 338
>gi|375267036|ref|YP_005024479.1| ATP-dependent DNA helicase RecQ [Vibrio sp. EJY3]
gi|369842356|gb|AEX23500.1| ATP-dependent DNA helicase RecQ [Vibrio sp. EJY3]
Length = 611
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 202/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FRDGQ E I +D + +++++PTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 18 RVLEDVFGYQKFRDGQQEVIDAAIDGQDSLVIMPTGGGKSLCYQIPALVRNGITLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+++VSPER L DF+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHNGQLKLIYVSPERVLMRDFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ + +A+TATA T RD
Sbjct: 138 LESLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQHFSHVPFMALTATADDATRRD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L + + + R N++ ++ E+ V ++ + + K +
Sbjct: 195 ILERLRLNDPQVYLGSFDRPNIRYNLV--------EKHKPVSQIIRYLETQKGNCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N I YH+G+ +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMVTEKLCNNHIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADISWLR 352
>gi|113971918|ref|YP_735711.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
gi|113886602|gb|ABI40654.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
Length = 607
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/354 (37%), Positives = 205/354 (57%), Gaps = 13/354 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D+ L + L V+GY FRDGQ E I+ V + ++++PTG GKSLCYQ+PA+++PG+T+
Sbjct: 10 DDPLSQRLAQVFGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALLMPGITI 69
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
VV PL++LM DQ+ L ++ +L+SSQ E+ E +R + G +K+L+VSPER L A
Sbjct: 70 VVSPLISLMKDQVDSLLQTGVNAAYLNSSQPREQSVEVLRQLHRGELKLLYVSPERLLTA 129
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
DF+ + L S+ +DEAHC+S+W H+FRP Y L L+ ++A+TATA
Sbjct: 130 DFIERMRSLPL-SMFAIDEAHCISQWGHDFRPEYAAL--GQLKQLFPHVPMMALTATADQ 186
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
T +++ L I L+ R N++ +V+ N R + + + SS Y
Sbjct: 187 ATRQNICERLGINPFKLLSSFD-RPNIRYTVAEKLNAANQLRQFLLQQ----NGSSGIVY 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
D ++ L K+YH+G+ ++R +Q+ F ++I +VVATVAFGM
Sbjct: 242 ----CSSRRRVDEVAERLTLQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATVAFGM 297
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
G++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 298 GINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLI 351
>gi|424040927|ref|ZP_17778974.1| ATP-dependent DNA helicase, RecQ family protein [Vibrio cholerae
HENC-02]
gi|408891304|gb|EKM29155.1| ATP-dependent DNA helicase, RecQ family protein [Vibrio cholerae
HENC-02]
Length = 616
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 184/615 (29%), Positives = 286/615 (46%), Gaps = 54/615 (8%)
Query: 210 IKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGG 268
I+ V++ S + PTG+GKSLCYQ+PA LP LTLV+ PL+ALM DQL L I
Sbjct: 2 IEAVMNGHSAAAIFPTGSGKSLCYQLPATQLPHLTLVISPLLALMKDQLGFLQSKGIAAA 61
Query: 269 FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVS 328
+ SSQ EE + + ++ G IK+L +S ER N F L SL+VVDEAHC+S
Sbjct: 62 SIDSSQSREEAQQVMAGVKNGQIKILMISVERLKNERFREFIRQIPL-SLMVVDEAHCIS 120
Query: 329 EWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLR 388
EW HNFRP Y++L + LN+ L +TATAT + D+ + I N+ R
Sbjct: 121 EWGHNFRPDYLKLPQ--YQRELNIPQTLLLTATATPAVIEDMQNKFNIAGENITVTGFYR 178
Query: 389 DNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSIS 448
NL +SV + +N+++ D + + + Y+ Q + ++ L I+
Sbjct: 179 PNLDISVVPC--DEENKQTQLNDIIAATPKLPSIVYVTQ----QQTAEQVASSLIRLGIN 232
Query: 449 VKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQ 508
+YH+G+ + R +IQ+ F ++I +VAT+AFGMG+DK D+ VIH+ LP+S+E Y Q
Sbjct: 233 AHAYHAGMKSDIREKIQQQFMDSQIDCIVATIAFGMGVDKSDIRRVIHFDLPKSIENYAQ 292
Query: 509 EIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCS 568
EIGRAGRDG+ S C L + L + +Y D + ++N L Q+ N
Sbjct: 293 EIGRAGRDGQRSECILLGNTSGLTVLENFVYGDTPEPSSVNYVLEQIRENTPQWEVMALR 352
Query: 569 LVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLL----AD 624
L ++S R+ +K TLL LEL ++ ++ F + +L +
Sbjct: 353 LSRDSNIRQLPLK-----TLLVYLELAKV--IEAKYSYFAEYRFKFLQEQSFILNQFQGE 405
Query: 625 KDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYC 684
+ + V I S + D+ + + + V L G I E K
Sbjct: 406 RRQFVEAIFACSTKAKVWCQVDLEALWMNYQSERNRVVAALDYFHQNGWIELESKQLTDV 465
Query: 685 YTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPC 744
Y+++ A+S HL + E+ + ++ M ++F + C
Sbjct: 466 YSVLPATQSQEAISQHLIELFQSKEHKDIERIHTML--SLFQ--------------SSDC 509
Query: 745 LQKNILDYFRGDD------NCDV----------PNKIGQSSPFLRADIKVFLQSNLNAKF 788
L + YF D +C V P + L + F+Q + A
Sbjct: 510 LSHQLAQYFADHDAPTQCGHCSVCRGQVASFPQPQQTQPELGHLSTWVDEFVQLSPTA-I 568
Query: 789 TPRAVARILHGIASP 803
+ AVAR L GI++P
Sbjct: 569 SNAAVARFLCGISTP 583
>gi|332882718|ref|ZP_08450329.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332679220|gb|EGJ52206.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 729
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 212/373 (56%), Gaps = 17/373 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L L+ +G+++F+ Q E I V++K++T +++PTG GKSLCYQ+PA++L G +V+
Sbjct: 7 DLHDALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAIVI 66
Query: 248 CPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
PL+ALM +D +R + + H L+SS E+ E + I G K+L+V+PE
Sbjct: 67 SPLIALMKNQVDAMRGISSTDSIAH--VLNSSLTKNEIREVMEDISNGKTKLLYVAPESL 124
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
+ ++ + F T IS V VDEAHC+SEW H+FRP Y ++ + R N+ I+A+TAT
Sbjct: 125 IKEEYAN-FLKTVPISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGSNI-PIVALTAT 182
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
AT D++ L + +N+ + + R NL V N + +V + + K
Sbjct: 183 ATPKVQEDILKNLGMLEANVFKSSFNRPNLYYEVRPKTKNVDADIIRFVKQ-----NTKK 237
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I +S K E +++ L N IS YH+G+ AK R++ Q++F ++ VVVAT+A
Sbjct: 238 SGIIYCLSRKKVED--LAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIA 295
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541
FGMG+DK DV VIH+ +P+S+E Y QE GRAGRDG +C F +L M
Sbjct: 296 FGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIGK 355
Query: 542 GVDEYAINKFLCQ 554
+ E I + L Q
Sbjct: 356 PIAEQEIGQALLQ 368
>gi|268324317|emb|CBH37905.1| probable ATP-dependent DNA helicase [uncultured archaeon]
Length = 781
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 187/592 (31%), Positives = 300/592 (50%), Gaps = 64/592 (10%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+ + +FR Q E IK VL +K+T+ +LPTG GKS+C+QIPA+I GLT+VV PL+
Sbjct: 14 ILNSVFNHHTFRSRQEEIIKNVLAQKNTLAILPTGVGKSICFQIPALIFDGLTVVVSPLI 73
Query: 252 ALMIDQLRHLPPVIHGGFLSS---SQRPEEVAETI-RLIQVGAIKVLFVSPERFLNADFL 307
ALM DQ+ +L HG F ++ S + E I +L++ +K+L+V+PE F++ +
Sbjct: 74 ALMKDQVDNLKK--HGIFEAAYINSMLDQATKEQIHKLLKESKLKMLYVAPETFVDNKLM 131
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
SI T ISL+ +DE HC+S W HNFRP Y+RL+ + +L +TATAT T
Sbjct: 132 SIL-KTCNISLIAIDEVHCISVWGHNFRPDYLRLQRVIADLHNPPPPVLGLTATATKTVE 190
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ L I ++ + + R NL SV NN + E S + + + S Y+
Sbjct: 191 NDIQKQLGIE-CDVFKDSFDRKNLLFSVIPMKNNNRKELS--LKRLLGQLKGSTIVYV-- 245
Query: 428 ISGKHFE--TDLISRYLCDNSISVKSYHSGI-PAKDRSRIQELFCSNKIRVVVATVAFGM 484
+F + ++ YL D+ ++ YH I +++R R+Q F + + R+VVAT AFGM
Sbjct: 246 ----NFTKTAEWLATYLDDSGLNASYYHGQIRDSEERKRVQNDFINGRTRIVVATNAFGM 301
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD 544
G+DK D+ A+IHY+LP+S+E Y QE+GRAGRD +S C L +LR L+ +
Sbjct: 302 GIDKEDIRAIIHYNLPKSIENYYQEVGRAGRDQNISNCILLYSKGDEIQLRKLIQRNTPS 361
Query: 545 EYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLE-LGEIQ-YLQL 602
I L + T G G L + + + + + E + +L LE LG ++ Y ++
Sbjct: 362 AEQIEAVL-DLLTQG---EGDLIYVNVKRLANELTLDEVPIRLILHNLERLGALKTYFKI 417
Query: 603 LPELKVTC------TLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGA 656
V+ +LN+ D +K+ + + D+ +++++
Sbjct: 418 FKRAVVSVQHADFGSLNYRH-------DAEKIYKNAYFNASLNRW---MDLDMLSSAVQI 467
Query: 657 TTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKL 716
+ ++N L LK G+I EL + +C + P L + L +E ++K+
Sbjct: 468 SVPRINNVLRELKTAGQI--ELVERDFCTPVKVYPGIKDVDIMDLHQILLRLETNSMKKI 525
Query: 717 DRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYF----RGDDN-CDVPN 763
D++ V+ E C +K IL+YF GD N C V N
Sbjct: 526 DKI-------VEYVESKE---------CKRKFILNYFGEEYDGDCNACSVCN 561
>gi|414079433|ref|YP_007000857.1| ATP-dependent DNA helicase RecQ [Anabaena sp. 90]
gi|413972712|gb|AFW96800.1| ATP-dependent DNA helicase RecQ [Anabaena sp. 90]
Length = 729
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 206/357 (57%), Gaps = 17/357 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L + L+ +GYD FR GQ + I+ L+ + M+V+PTG GKSLC+Q+PA++ PGLT+VV
Sbjct: 6 HLEKALKHHFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVV 65
Query: 248 CPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQ+ L I FL+SS +V I G IK+L+V+PER ++ F
Sbjct: 66 SPLIALMQDQVEALRTNNISATFLNSSLNAYKVRSREEAIMNGKIKLLYVAPERLVSERF 125
Query: 307 LSIFTATSL---ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
L + IS +DEAHCVSEW H+FRP Y +LR LLR R +A+TATAT
Sbjct: 126 LPLLDVVKEKVGISTFAIDEAHCVSEWGHDFRPEYRQLR--LLRKRYPDVPTIALTATAT 183
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D++ L + ++ + R NL V ++ N A + E+ + S
Sbjct: 184 DRVRADIIEQLGLKQPSIHIASFNRQNLHYEV----RSKSNRAYAELLEIVRENEGSGII 239
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
Y L + D I+ L ++ +SV YH+G+ ++RS+ Q F + +RV+VATVAFG
Sbjct: 240 YCL----TRKKVDEITLKLQNDKVSVLPYHAGLSDEERSKNQTRFIRDDVRVMVATVAFG 295
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYS 540
MG++K DV V+H LP +LE Y QE GRAGRD S C LF + Y ++++ +S
Sbjct: 296 MGINKPDVRFVVHSDLPRNLESYYQESGRAGRDDEPSKCTLFFN---YGDIKTIEWS 349
>gi|302874440|ref|YP_003843073.1| ATP-dependent DNA helicase RecQ [Clostridium cellulovorans 743B]
gi|307690953|ref|ZP_07633399.1| ATP-dependent DNA helicase RecQ [Clostridium cellulovorans 743B]
gi|302577297|gb|ADL51309.1| ATP-dependent DNA helicase RecQ [Clostridium cellulovorans 743B]
Length = 741
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 206/340 (60%), Gaps = 11/340 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ +LL+ YGYDS R+ Q + I+ +L+ K T+ ++PTG GKS+CYQ+ A++L G+T+V+
Sbjct: 5 IQQLLKKYYGYDSLREAQEKTIEKILEGKDTLTIMPTGGGKSICYQLSALMLKGVTIVIS 64
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM +Q+ L + I+ +++SS +V I ++ G K+L+V+PER N DF+
Sbjct: 65 PLISLMKEQVDTLNELGINSTYINSSVEKNQVISRIMALKNGEYKILYVAPERLENYDFI 124
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
+ + I+++ VDEAHCVS+W H+FRPSY R+ ++++ + I A TATAT
Sbjct: 125 QVISDID-IAMIAVDEAHCVSQWGHDFRPSYRRI-SNMIGCLKHRPIISAFTATATEEVK 182
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D++S L + ++ R NL L V L G N+++ Y+ + +K +
Sbjct: 183 KDIISLLGLATPDVFINGFDRQNLNLKV-LKGINKRDFLKEYLAQ-------NKGLCGII 234
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + + + +L + V YH G+ + R++ QE F + + ++VAT AFGMG+D
Sbjct: 235 YTSTRKDAEKVYEFLLKENHKVGVYHGGLSDEKRNQFQEDFIYDNVDIMVATNAFGMGID 294
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
K +V VIHY++P+S+E Y QE+GR GRDG S C L +
Sbjct: 295 KSNVRYVIHYNMPKSIEAYYQEVGRGGRDGGESDCILLFN 334
>gi|443634643|ref|ZP_21118816.1| ATP-dependent DNA helicase RecQ [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443345450|gb|ELS59514.1| ATP-dependent DNA helicase RecQ [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 591
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 197/337 (58%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ R GQ EAI+ V + +++T+ ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKLRIGQEEAIRSVTEERQNTVCIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ +++S+Q +E+ E + ++ A K+ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEAAYKLFYITPERLTSTEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ + LV +DEAHC+S+W H+FRPSY + L R + I+A+TATAT D
Sbjct: 128 LQSID-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFRELHDKPVIMALTATATPEVHED 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + RDNL V+ G N+ ++DE + + +KH + +
Sbjct: 186 ICKQLHIQKENTVYTGFSRDNLTFKVA-KGENKDR----FIDE---YVQKNKHEAGIVYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D I L N IS YH G+ R QE F +++++V+VAT AFGMG+DK
Sbjct: 238 ATRKEADRIYERLKRNQISAGRYHGGLADDVRKDQQERFLNDELQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLDSECVLLF 334
>gi|423083657|ref|ZP_17072187.1| ATP-dependent DNA helicase RecQ [Clostridium difficile
002-P50-2011]
gi|423088292|ref|ZP_17076675.1| ATP-dependent DNA helicase RecQ [Clostridium difficile
050-P50-2011]
gi|357542864|gb|EHJ24899.1| ATP-dependent DNA helicase RecQ [Clostridium difficile
050-P50-2011]
gi|357544417|gb|EHJ26421.1| ATP-dependent DNA helicase RecQ [Clostridium difficile
002-P50-2011]
Length = 827
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 204/342 (59%), Gaps = 11/342 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
++NL +L YGY SFR GQ I +L +K + ++PTG GKS+CYQIPA+IL G+T+
Sbjct: 2 NKNLLEILSKYYGYTSFRKGQESIINSILSEKDVLAIMPTGGGKSICYQIPALILDGMTI 61
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ+ L + I F++SS +E E + I+ K+L+++PER
Sbjct: 62 VISPLISLMKDQVDALKTMGISAAFINSSLSSKEFNEILNNIRKNNYKILYIAPERLDAQ 121
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
+FL + + +S V +DEAHCVS+W H+FR SY R+ + ++ + A TATA+
Sbjct: 122 EFLELINNNN-VSQVAIDEAHCVSQWGHDFRLSYRRI-SDFIKNLPKRPIVTAFTATASE 179
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+++ L + + R+NL +++ + + ++ Y+ + H++
Sbjct: 180 EVRTDIINLLCLENPDYYITGFDRENLSINIV-----KSSSKNKYILDYIQNHKNESG-- 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ ++ + E + I L +ISV YH+G+ +RS+ QE F ++ + ++VAT AFGM
Sbjct: 233 IIYVATRK-EVENIYNGLSKRNISVSKYHAGLSKNERSKNQEDFINDNVDIMVATNAFGM 291
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK ++ VIHY++P+S+E Y QEIGRAGRDG S C L
Sbjct: 292 GIDKPNIRWVIHYNMPQSIENYYQEIGRAGRDGEKSECVLLF 333
>gi|323499630|ref|ZP_08104598.1| ATP-dependent DNA helicase RecQ [Vibrio sinaloensis DSM 21326]
gi|323315231|gb|EGA68274.1| ATP-dependent DNA helicase RecQ [Vibrio sinaloensis DSM 21326]
Length = 611
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY FRDGQ E I+ + + +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 19 VLQEVFGYQEFRDGQQEVIESAVRGQDSLVIMPTGGGKSLCYQIPALVRNGLTLVISPLI 78
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++S+ +E+ + GAIK+++VSPER L DF+
Sbjct: 79 SLMKDQVDQLKANGVAAECVNSTMPRDELISVYNRMNSGAIKLIYVSPERVLMRDFIERL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++ VDEAHC+S+W H+FRP Y L L+ ++A+TATA T +D+
Sbjct: 139 EQLPL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKQYFPHVPVMALTATADDATRKDI 195
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
M L++ + + R N++ ++ E+ + +V F + + G
Sbjct: 196 MQRLQLQDPHSYLGSFDRPNIRYTLI--------EKHKPISQVVRFLEGQRGQCGIIYCG 247
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N + SYH+G+ A +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 248 SRKKVEMVTEKLCNNGLRAASYHAGLDADERAYVQEAFQRDDIQIVVATVAFGMGINKPN 307
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 308 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|291550889|emb|CBL27151.1| ATP-dependent DNA helicase, RecQ-like [Ruminococcus torques L2-14]
Length = 653
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 199/336 (59%), Gaps = 11/336 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ ++GYDSFR GQ E + +L+ + + ++PTGAGKSLCYQ+PA+++ G+T+VV PL
Sbjct: 9 QILKEIFGYDSFRKGQEEIVDQILNGRDVLAIMPTGAGKSLCYQVPALLMSGITIVVSPL 68
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LMIDQ++ L +H +++S+ ++ + + L G K+++V+PER L FL
Sbjct: 69 ISLMIDQVKALNEAGVHAAYINSALTERQITKALELAAAGRYKMIYVAPERLLTPRFLD- 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F + +S+V +DEAHC+S+W +FRPSY+++ +R + A TATAT D
Sbjct: 128 FACHTELSMVTIDEAHCISQWGQDFRPSYVKI-TEFIRQLPRRPVVSAFTATATQKVRED 186
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L++ + R+NL V + + + E + HR I+ +
Sbjct: 187 ILEVLDLESPYINVSGFDRENLYFEVRPARGKKDA-----IKEYLTQHREDSG--IIYCA 239
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ D + L + SV YH+G+ + R+ QE F ++ +++AT AFGMG+DK
Sbjct: 240 TRK-NVDELYLELQNAGFSVGRYHAGMGTEARNESQEDFIYDRTEIMIATNAFGMGIDKS 298
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+V V+HY++P+S+E Y QE GRAGRDG + C LF
Sbjct: 299 NVRFVLHYNMPQSMENYYQEAGRAGRDGEPAECILF 334
>gi|228991633|ref|ZP_04151574.1| ATP-dependent DNA helicase RecQ [Bacillus pseudomycoides DSM 12442]
gi|228768071|gb|EEM16693.1| ATP-dependent DNA helicase RecQ [Bacillus pseudomycoides DSM 12442]
Length = 705
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 192/335 (57%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL +GY SFR GQ E IK VL K T+ ++PTG GKS+CYQIPA++ G TLV+ PL+
Sbjct: 8 LLASYFGYSSFRRGQDETIKNVLAGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLI 67
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +++SS E + I+L + G K+L+V+PER + +F+
Sbjct: 68 SLMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLLYVAPERLDSMEFVDQL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I ++ +DEAHC+S+W H+FRPSY+ + +L +LA+TATAT D+
Sbjct: 128 IDMK-IPMIAIDEAHCISQWGHDFRPSYLHIH-RILDYLPEKPLVLALTATATPQVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LEI N I R+NL SV + G +R + Y+ R +K + +
Sbjct: 186 CRTLEIDQKNTIMTTFERENLSFSV-IKGQDRNAYLADYI-------RQNKKESGIIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
D + L +SV YH+G+ DR+ QE F +++ V+VAT AFGMG+DK +
Sbjct: 238 TRKVVDQLYEDLYKAGVSVARYHAGMNDHDRNEQQERFLRDEVSVMVATSAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ VIHY LP+++E Y QE GRAGRDG S C L
Sbjct: 298 IRYVIHYQLPKNMESYYQEAGRAGRDGLDSECILL 332
>gi|398307607|ref|ZP_10511193.1| ATP-dependent DNA helicase RecQ [Bacillus vallismortis DV1-F-3]
Length = 591
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 195/337 (57%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ R+GQ EAI+ V + +++T ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKLRNGQEEAIRSVTEVRQNTACIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +++S+Q +E+ + ++ GA K+ +++PER +A+F+ I
Sbjct: 68 ISLMKDQVDALEEAGISAAYINSTQSNQEIYGRLNGLKEGAYKLFYITPERLTSAEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ LV +DEAHC+S+W H+FRPSY + L R + I+A+TATAT D
Sbjct: 128 LQGID-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFRELHDKPVIMALTATATPEVHED 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + RDNL V+ G N+ ++DE + + +KH + +
Sbjct: 186 ICKQLHIHKENTVYTGFSRDNLTFKVA-KGENKDR----FIDE---YVQQNKHEAGIIYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D I L N I YH G+ R QE F +++++V+VAT AFGMG+DK
Sbjct: 238 ATRKEADRIYEKLKRNQIRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLESECVLLF 334
>gi|255306721|ref|ZP_05350892.1| ATP-dependent DNA helicase [Clostridium difficile ATCC 43255]
Length = 827
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 204/342 (59%), Gaps = 11/342 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
++ L +L YGY SFR GQ I +L +K + ++PTG GKS+CYQIPA+IL G+T+
Sbjct: 2 NKKLLEILSKYYGYTSFRKGQESIINSILSEKDVLAIMPTGGGKSICYQIPALILDGMTI 61
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ+ L + I F++SS +E E + I+ K+L+++PER
Sbjct: 62 VISPLISLMKDQVDALKTMGISAAFINSSLSSKEFNEILNNIRKNNYKILYIAPERLDAQ 121
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
+F+ + + +S V +DEAHCVS+W H+FR SY R+ + ++ + A TATA+
Sbjct: 122 EFIELINNNN-VSQVAIDEAHCVSQWGHDFRLSYRRI-SDFIKNLPKRPIVTAFTATASE 179
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+++ L + + R+NL +++ S + ++ Y+ + H++
Sbjct: 180 EVRTDIINLLYLENPDYYITGFDRENLSINIVKSSS-----KNKYILDYIQNHKNESG-- 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ ++ + E + IS L +ISV YH+G+ +RS+ QE F ++ + ++VAT AFGM
Sbjct: 233 IIYVATRK-EVENISNGLSKRNISVSKYHAGLSKNERSKNQEDFINDNVDIMVATNAFGM 291
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK ++ VIHY++P+S+E Y QEIGRAGRDG S C L
Sbjct: 292 GIDKPNIRWVIHYNMPQSIENYYQEIGRAGRDGEKSECVLLF 333
>gi|417001954|ref|ZP_11941427.1| ATP-dependent DNA helicase RecQ [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479664|gb|EGC82756.1| ATP-dependent DNA helicase RecQ [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 591
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 130/334 (38%), Positives = 200/334 (59%), Gaps = 12/334 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR GQ E I+ +L+ ++ + VLPTG GKS+CYQ+PA++ G++LV+ PL++
Sbjct: 10 LKKYFGYDSFRQGQRELIENILEGRNVLGVLPTGGGKSICYQLPALMTDGVSLVISPLIS 69
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I+ GF++SS EE + + ++ G IK+L++SPER N +F F
Sbjct: 70 LMKDQVDSLRENGINAGFINSSLDSEEYRKILSDVKTGQIKILYISPERLEN-EFFRNFI 128
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
I V VDEAHC+S+W H+FRPSY +L L + +V+ ILA TATAT D++
Sbjct: 129 RDIDICFVAVDEAHCISQWGHDFRPSY-KLIPDLYQILGDVQ-ILAFTATATKEVREDII 186
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+ L++ + R NL V+ N + Y++ HR I+ S +
Sbjct: 187 NNLQLSNPFIKVTGFDRKNLYFKVAKPKN-----KLTYLNSYLKDHRDESG--IIYASTR 239
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+ D I + L +++ YH+G+ +R + Q+ F ++ +++VAT AFGMG+DK +V
Sbjct: 240 K-KVDDIYKNLKSRGYAIEKYHAGLSEDERKKAQDNFIYDRAKIIVATNAFGMGIDKSNV 298
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
VIHY++P+ +E Y QE GRAGRDG + C L
Sbjct: 299 RFVIHYNMPKDMESYYQEAGRAGRDGEDATCILL 332
>gi|126699307|ref|YP_001088204.1| ATP-dependent DNA helicase [Clostridium difficile 630]
gi|115250744|emb|CAJ68568.1| ATP-dependent DNA helicase [Clostridium difficile 630]
Length = 827
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 204/342 (59%), Gaps = 11/342 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
++ L +L YGY SFR GQ I +L +K + ++PTG GKS+CYQIPA+IL G+T+
Sbjct: 2 NKKLLEILSKYYGYTSFRKGQESIINSILSEKDVLAIMPTGGGKSICYQIPALILDGMTI 61
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ+ L + I F++SS +E E + I+ K+L+++PER
Sbjct: 62 VISPLISLMKDQVDALKTMGISAAFINSSLSSKEFNEILNNIRKNNYKILYIAPERLDAQ 121
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
+F+ + + +S V +DEAHCVS+W H+FR SY R+ + ++ + A TATA+
Sbjct: 122 EFIELINNNN-VSQVAIDEAHCVSQWGHDFRLSYRRI-SDFIKNLPKRPIVTAFTATASE 179
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+++ L + + R+NL +++ + + ++ Y+ + H++
Sbjct: 180 EVRTDIINLLYLENPDYYITGFDRENLSINIV-----KSSSKNKYILDYIQNHKNESG-- 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ ++ + E + IS L +ISV YH+G+ +RS+ QE F ++ + ++VAT AFGM
Sbjct: 233 IIYVATRK-EVENISNGLSKRNISVSKYHAGLSKNERSKNQEDFINDNVDIMVATNAFGM 291
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK ++ VIHY++P+S+E Y QEIGRAGRDG S C L
Sbjct: 292 GIDKPNIRWVIHYNMPQSIENYYQEIGRAGRDGEKSECVLLF 333
>gi|89098913|ref|ZP_01171793.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
gi|89086317|gb|EAR65438.1| ATP-dependent DNA helicase [Bacillus sp. NRRL B-14911]
Length = 719
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 199/342 (58%), Gaps = 13/342 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E +LL+ +GY +FR+GQ E I+ V++ + T+ +LPTG GKSL +QIPA+ +PG +V
Sbjct: 5 EQAEKLLKQYFGYSTFRNGQKEIIQNVMNGRHTLGILPTGGGKSLSFQIPALAMPGTAIV 64
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL++LM DQ+ L + F++SS +E+ E I+ G K+++ +PERF +
Sbjct: 65 ISPLISLMKDQVDALLAAGVSATFINSSLTQQELMERTSGIRNGEYKLVYAAPERFDSTG 124
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECIL-AMTATATT 364
F+ + + IS++V DEAHC+S+W H+FRPSY + +L +LN IL +TATAT
Sbjct: 125 FIHLLNSID-ISMIVFDEAHCISQWGHDFRPSYRSIIPAL--GQLNGRPILVGLTATATE 181
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L+I ++ R+NL V+ N R+ + S+ R +
Sbjct: 182 DVANDICGLLQIRDEDIFITGFARENLAFKVAKGVNKREF--------IASYIRKHQGQP 233
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ + ETD + ++L +I YH+G+ +DR Q F ++ ++VAT AFGM
Sbjct: 234 GIIYTSSRKETDQLQQFLQGKNIPASRYHAGMNEEDRKTAQNDFVHDQTDIMVATNAFGM 293
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK +V VIHYSLP+++E Y QE GRAGRDG S C L
Sbjct: 294 GIDKSNVRFVIHYSLPKNIEAYYQEAGRAGRDGEESECILLF 335
>gi|417321543|ref|ZP_12108080.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus 10329]
gi|328471322|gb|EGF42221.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus 10329]
Length = 611
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 205/346 (59%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY +FRDGQ E I+ ++ K +++++PTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 18 RVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+++VSPER L DF+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L +++ VDEAHC+S+W H+FRP Y L L+ + +A+TATA T RD
Sbjct: 138 LENLPL-AMIAVDEAHCISQWGHDFRPEYAAL--GQLKQHFSHVPFMALTATADDATRRD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L + ++ + R N++ ++ E+ V ++ + + K +
Sbjct: 195 ILERLRLHEPHVHLGSFDRPNIRYNLV--------EKHKPVSQIIRYLDTQKGNCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|168186859|ref|ZP_02621494.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum C str.
Eklund]
gi|169295183|gb|EDS77316.1| ATP-dependent DNA helicase RecQ [Clostridium botulinum C str.
Eklund]
Length = 812
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 194/336 (57%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L YGY SFR GQ + I VL + ++PTG GKS+CYQIPA+I+ G+T+V+ PL+
Sbjct: 8 ILEKYYGYKSFRKGQEQVITSVLSGNDVLAIMPTGGGKSICYQIPALIMEGMTIVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + + I +++SS E E I ++ K+L+V+PER + +FLS
Sbjct: 68 SLMKDQVDSIKSMGISSAYINSSLSTYEFNEVIESLKDNKYKILYVAPERLESYEFLSAI 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
IS V +DEAHCVS+W H+FR SY + + R R+ + A TATA+ D+
Sbjct: 128 ENIK-ISQVAIDEAHCVSQWGHDFRVSYRNVSKFIKRFRVR-PIVTAFTATASNEVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L + + R+NL +SV SG+ + Y+ ++ ++K + +
Sbjct: 186 IKLLRLNKPQVFITGFDRENLSISVIKSGS-----KKTYL---LNYIENNKEESGIIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L SV YH+G+ +R++ QE F +++R++VAT AFGMG+DK +
Sbjct: 238 TRKEVDNIYENLNKKGYSVGRYHAGLSDDERNKNQEDFIHDRVRIMVATNAFGMGIDKPN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+ VIHYS+P+++E Y QEIGRAGRDG S C L
Sbjct: 298 IRYVIHYSMPKNIESYYQEIGRAGRDGEKSECILLF 333
>gi|336317637|ref|ZP_08572488.1| ATP-dependent DNA helicase RecQ [Rheinheimera sp. A13L]
gi|335877984|gb|EGM75932.1| ATP-dependent DNA helicase RecQ [Rheinheimera sp. A13L]
Length = 599
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 128/363 (35%), Positives = 212/363 (58%), Gaps = 15/363 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GY FR GQLE I+ L + T +++PTG GKSLCYQ+PA++LP +T+VV PL++
Sbjct: 9 LKQAFGYSQFRHGQLEVIQACLSGQDTFVLMPTGGGKSLCYQLPALMLPYVTVVVSPLMS 68
Query: 253 LMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I F++SSQ EE+ + IR ++ +K+L+++PER L ADF+S
Sbjct: 69 LMKDQVDALQANGIAAEFINSSQSREEIQDVIRRLRNQQLKLLYLAPERLLQADFMSRLA 128
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+SL +DEAHC+S+W H+FRP Y L + L+ ++A+TATA T +D+
Sbjct: 129 EVG-VSLFAIDEAHCISQWGHDFRPHYTEL--AQLKHYFPHVPMMALTATADPATQKDIS 185
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L + + + R N++ +V E+ +++V ++ + + +
Sbjct: 186 RQLNLQQPYISVGSFDRPNIRYTV--------QEKFRPLEQVVNYLKLQEQQSGIIYCAS 237
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+ D ++ L V +YH+G+ + R+ +QE F ++I++++ATVAFGMG++K ++
Sbjct: 238 RRKVDELTEQLAGKGFQVAAYHAGLTNEQRNSVQEAFKKDQIQLIIATVAFGMGVNKSNI 297
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD---EYAI 548
VIH+ LP ++E Y QE GRAGRDG + + +D R+RS + D + E A+
Sbjct: 298 RFVIHFELPRTIEAYYQETGRAGRDGVPAEALMLVDPADIARMRSWIEKDENNSRTEVAL 357
Query: 549 NKF 551
+F
Sbjct: 358 QRF 360
>gi|336313085|ref|ZP_08568028.1| ATP-dependent DNA helicase RecQ [Shewanella sp. HN-41]
gi|335863205|gb|EGM68363.1| ATP-dependent DNA helicase RecQ [Shewanella sp. HN-41]
Length = 607
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 206/354 (58%), Gaps = 13/354 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D+ L + L V+GY FRDGQ E I+ V + + ++++PTG GKSLCYQ+PA+++ G+T+
Sbjct: 10 DDPLSQRLAQVFGYRDFRDGQREVIERVCNGQDCLVIMPTGGGKSLCYQLPALLMDGITI 69
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
VV PL++LM DQ+ L + +L+SS E+ AE +R ++ G +K+L+VSPER L A
Sbjct: 70 VVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLYVSPERLLTA 129
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
DF+ + L ++ +DEAHC+S+W H+FRP Y L L+ ++A+TATA
Sbjct: 130 DFIERMQSMPL-AMFAIDEAHCISQWGHDFRPEYAAL--GQLKQLFPYVPMMALTATADL 186
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
T + + L I L+ R N++ +V+ N R F ++
Sbjct: 187 ATRQSICERLGIDPYRLLSSFD-RPNIRYTVAEKLNAANQLRH------FLLQQNGSSGI 239
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I S + D ++ LC + K+YH+G+ ++R +Q+ F ++I +VVATVAFGM
Sbjct: 240 IYCSSRRR--VDEVADRLCQQGFNAKAYHAGMTQEERGTVQDSFLKDQIDIVVATVAFGM 297
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
G++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 298 GINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLI 351
>gi|399047510|ref|ZP_10739524.1| ATP-dependent DNA helicase RecQ [Brevibacillus sp. CF112]
gi|398054650|gb|EJL46764.1| ATP-dependent DNA helicase RecQ [Brevibacillus sp. CF112]
Length = 591
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GY+SFR+GQ + I+ +L T+ ++PTG GKS+CYQ+PAM+ G+T+V+ PL+
Sbjct: 8 VLQKYFGYESFREGQKKIIESLLAGHDTIGIMPTGGGKSICYQVPAMLFDGVTIVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I ++SS EV E +R+ G K+L+++PER + F ++
Sbjct: 68 SLMKDQVDVLVNMGIAATQINSSLDYSEVRERLRMAARGEYKLLYIAPERLESETFQNLI 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
IS V VDEAHCVS+W H+FRPSY+ + A LR + A+TATAT D+
Sbjct: 128 RNVP-ISFVAVDEAHCVSQWGHDFRPSYLEI-ARFLRTLPERPIVAALTATATPEVTADI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L + L RDNL LSV G NR+ AY+ ++++ + + +
Sbjct: 186 KRQLSLEDERLFITGFGRDNLILSVR-KGENRRGFIQAYL-------KANRQHAGIIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L SV YH+G+ ++R+ QE F + +R +VAT AFGMG+DK +
Sbjct: 238 TRKDVDALHADLAKRGFSVTKYHAGLSEEERAANQEAFLFDDVRTMVATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY++P++LE Y QE GRAGRDG S C L
Sbjct: 298 VRYVIHYNMPKNLEAYYQEAGRAGRDGEPSECILL 332
>gi|261213176|ref|ZP_05927459.1| ATP-dependent DNA helicase RecQ [Vibrio sp. RC341]
gi|260837594|gb|EEX64288.1| ATP-dependent DNA helicase RecQ [Vibrio sp. RC341]
Length = 620
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 204/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNIPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N+I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNNIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|297585073|ref|YP_003700853.1| ATP-dependent DNA helicase RecQ [Bacillus selenitireducens MLS10]
gi|297143530|gb|ADI00288.1| ATP-dependent DNA helicase RecQ [Bacillus selenitireducens MLS10]
Length = 591
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 195/332 (58%), Gaps = 11/332 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY FR GQ E + + +ST+ ++PTG GKS+CYQIP++IL G+T+V+ PL++LM D
Sbjct: 13 FGYGEFRTGQEEIMSYLFQGQSTLGIMPTGGGKSVCYQIPSLILDGVTIVISPLISLMKD 72
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I F++SS EEV + I+ G ++++++PER + F ++F
Sbjct: 73 QVDELSALGISATFINSSLSYEEVRSRFQGIRQGTYQLVYIAPERLESPGFNAMFEQLP- 131
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
+SL+ VDEAHC+S+W H+FRPSY+R+ L+ +LA+TATAT ++S L
Sbjct: 132 VSLIAVDEAHCLSQWGHDFRPSYLRI-PELIGRLFEPPPVLALTATATPEVADGIVSILG 190
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
IP SN +Q R+NL V+ +N + Y+ + + + H + + E
Sbjct: 191 IPASNRVQTGFARENLAFHVAKGEDN-----TRYIKD---YLLRNPHASGIIYAATRKEV 242
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ I L +I V YH G+ DR IQE F ++++V+VAT AFGMG++K +V VI
Sbjct: 243 ERIYARLLKQNIKVGRYHGGMTQDDRRSIQEAFVYDELQVMVATNAFGMGINKSNVRFVI 302
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
H +P ++E Y QE GRAGRDG C L D
Sbjct: 303 HAQMPRNIESYYQEAGRAGRDGEPGECILLFD 334
>gi|75908908|ref|YP_323204.1| ATP-dependent DNA helicase RecQ [Anabaena variabilis ATCC 29413]
gi|75702633|gb|ABA22309.1| ATP-dependent DNA helicase RecQ [Anabaena variabilis ATCC 29413]
Length = 718
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 200/351 (56%), Gaps = 30/351 (8%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL + L+ +GYD+FR GQ + I+ L + M+V+PTG GKSLC+Q+PA++ GLT+VV
Sbjct: 6 NLEQALKYHFGYDNFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQGLTVVV 65
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQ+ L I FL+SS +V I G +++L+V+PER L+ F
Sbjct: 66 SPLIALMQDQVEALRNNNISATFLNSSLNAYQVRSREEAILNGKVRLLYVAPERLLSERF 125
Query: 307 LSIFTATSL---ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
L + IS+ +DEAHCVSEW H+FRP Y +L++ LR R +LA+TATAT
Sbjct: 126 LPFLDLVNEKVGISIFAIDEAHCVSEWGHDFRPEYRQLKS--LRKRYPNVPVLALTATAT 183
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN--------ERSAYVDEVFS 415
D++ L + Q S+ L+ NRQN + AY + +
Sbjct: 184 DRVRSDIIQQLGLK--------------QPSIHLASFNRQNLYYEVRPKSKQAYAELLEL 229
Query: 416 FHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
+ I ++ K E ++ L + IS SYH+G+P +RS+ Q F + +RV
Sbjct: 230 IRDNEGSAIIYCLTRKKVEE--LTFKLQKDKISALSYHAGLPDDERSKNQTRFIRDDVRV 287
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+VAT+AFGMG++K DV V+H+ +P +LE Y QE GRAGRDG S C +F
Sbjct: 288 MVATIAFGMGINKPDVRLVVHFDIPRNLESYYQESGRAGRDGEPSRCTIFF 338
>gi|84393647|ref|ZP_00992398.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus 12B01]
gi|84375715|gb|EAP92611.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus 12B01]
Length = 612
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 128/352 (36%), Positives = 203/352 (57%), Gaps = 20/352 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY SFRDGQ E I + ++ K +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 20 ILQDVFGYQSFRDGQQEVIDLAVEGKDSLVIMPTGGGKSLCYQIPALVREGLTLVISPLI 79
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++SS E + + G +K+++VSPER L DF+
Sbjct: 80 SLMKDQVDQLKANGVAAECINSSMPRENLISVFNRMNSGQLKMVYVSPERVLMRDFIERL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++ VDEAHC+S+W H+FRP Y L L+ +A+TATA T +D+
Sbjct: 140 QGLPL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKQYFPHVPYMALTATADDATRKDI 196
Query: 371 MSALEI--PLSNL--IQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+S L++ P ++L + +R NL E+ V +V + + K +
Sbjct: 197 ISRLQLVDPHTHLGSFDRPNIRYNLV------------EKHKPVSQVVRYLETQKGNCGI 244
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
G + ++++ LC+N I YH+G+ +R+ +QE F + I++VVATVAFGMG+
Sbjct: 245 IYCGSRKKVEMVTEKLCNNGIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMGI 304
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
+K +V V+H+ +P ++E Y QE GRAGRDG + + D LR ++
Sbjct: 305 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADMGWLRRML 356
>gi|395238414|ref|ZP_10416343.1| ATP-dependent helicase RecQ [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477700|emb|CCI86320.1| ATP-dependent helicase RecQ [Lactobacillus gigeriorum CRBIP 24.85]
Length = 592
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 196/329 (59%), Gaps = 14/329 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GY FR GQ E I+ VL ++ + V+PTGAGKSLCYQ+PA++ PG+TLV+ PL+
Sbjct: 7 ILKKYFGYHEFRPGQAEVIQKVLTGENVLAVMPTGAGKSLCYQVPALVNPGVTLVISPLI 66
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I L+S+ EEV +R G IK+L+++PER L D+
Sbjct: 67 SLMKDQIDSLKQNGIEAAALNSTTPQEEVNPILRQAYEGKIKLLYLTPER-LAMDYFRYQ 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATTTTLR 368
+SLV VDEAHC+S+W H+FRP+Y ++ + LR++ N ILA+TATAT
Sbjct: 126 LNFLDVSLVAVDEAHCISQWGHDFRPAYRQILEGINSLRSKPN---ILALTATATPAVQE 182
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+ + L I +N + + R NL V N + + Y+ + + H
Sbjct: 183 DIANQLNISRNNFVITSFARPNLSFKVV----NSPKDTNKYIYDYINAHNDEAGIVYTNT 238
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
K D ++RYL +SV +YH G+ +R+++Q+ F ++++V+VAT AFGMG+DK
Sbjct: 239 RKK---VDDLTRYLKKRGVSVANYHGGMANDERTKVQDDFQFDRVQVIVATNAFGMGIDK 295
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
+V VIH + +++E Y QE GRAGRDG
Sbjct: 296 SNVRFVIHANSTKNIEAYYQEAGRAGRDG 324
>gi|28899781|ref|NP_799386.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus RIMD
2210633]
gi|153839097|ref|ZP_01991764.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AQ3810]
gi|260362513|ref|ZP_05775439.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus K5030]
gi|260877193|ref|ZP_05889548.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AN-5034]
gi|260897237|ref|ZP_05905733.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus Peru-466]
gi|260901369|ref|ZP_05909764.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AQ4037]
gi|28808033|dbj|BAC61270.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus RIMD
2210633]
gi|149747393|gb|EDM58357.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AQ3810]
gi|308088951|gb|EFO38646.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus Peru-466]
gi|308094160|gb|EFO43855.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AN-5034]
gi|308107192|gb|EFO44732.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus AQ4037]
gi|308112667|gb|EFO50207.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus K5030]
Length = 611
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 205/346 (59%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY +FRDGQ E I+ ++ K +++++PTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 18 RVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+++VSPER L DF+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L +++ VDEAHC+S+W H+FRP Y L L+ + +A+TATA T RD
Sbjct: 138 LENLPL-AMIAVDEAHCISQWGHDFRPEYAAL--GQLKQHFSHVPFMALTATADDATRRD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L + ++ + R N++ ++ E+ + ++ + + K +
Sbjct: 195 ILERLRLHEPHVHLGSFDRPNIRYNLV--------EKHKPISQIIRYLDTQKGNCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|242237700|ref|YP_002985881.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech703]
gi|242129757|gb|ACS84059.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech703]
Length = 607
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 133/352 (37%), Positives = 203/352 (57%), Gaps = 26/352 (7%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++LR +GY FR GQ I + + ++++PTG GKSLCYQIPA++L GLTLVV PL
Sbjct: 15 QILRETFGYQQFRPGQQAIIHAAVSGRDCLVIMPTGGGKSLCYQIPALVLDGLTLVVSPL 74
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + L+S+Q E+ I + G I++L+++PER N FL
Sbjct: 75 ISLMKDQVDQLQAYGVSAACLNSTQTREQQMAVIAGCRSGQIRLLYIAPERLTNEGFLEQ 134
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
FT + SL+ +DEAHC+S+W H+FRP Y L ++ R ++A+TATA TT D
Sbjct: 135 FTGWN-PSLIAIDEAHCISQWGHDFRPEYREL--GYIKQRFPQLPVVALTATADETTRND 191
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV------DEVFSFHRSSKHY 423
++ L LRD L V +S +R N R V D+++ F + +
Sbjct: 192 IIRLLG-----------LRDPL---VQISSFDRPNIRYTLVEKFKPLDQLWLFVQGQRGK 237
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
+ + + IS L + +SV +YH+G+ + R+++QE F + ++VVVATVAFG
Sbjct: 238 SGIIYCNSRAKVEDISARLQNRGLSVGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
MG++K +V V+H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQETGRAGRDGLAAEAALFYDPADMAWLR 349
>gi|308271158|emb|CBX27767.1| hypothetical protein N47_C18250 [uncultured Desulfobacterium sp.]
Length = 643
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 167/546 (30%), Positives = 267/546 (48%), Gaps = 28/546 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G++ F+ GQ + ++ ++ +ST+ + PTGAGKSLCYQ+PA+ GLTLV+ PL++
Sbjct: 7 LKTKFGFEDFKQGQEQVVEKIIAGESTIAIFPTGAGKSLCYQLPALHEQGLTLVISPLLS 66
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + L S + T+ + G +K+L ++ ER N F +
Sbjct: 67 LMKDQIEFLKKKKVPAAKLDSGMSATDYHNTLEAAKQGKLKILMIAVERLKNERFRTQLR 126
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+SL+VVDEAHC+SEW HNFRP Y+++ N+ L +TATAT+ ++D+
Sbjct: 127 QMK-VSLLVVDEAHCISEWGHNFRPDYLKIPK--FGKEFNINKTLLLTATATSKVVKDMC 183
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH--YYILQIS 429
IP SN++ R NL L V L +++ + +V S Y LQ +
Sbjct: 184 HKFSIPESNVVLTGFYRKNLFLRV-LPVQEEIKDKT--LTKVLSGKPEGPAIVYVTLQKT 240
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
++ I+R L + V++YH+G+ R +Q F S+ +VVAT+AFGMG+DK
Sbjct: 241 AEN-----IARVLKEKGFDVEAYHAGMKNDQREAVQNRFMSSNNSIVVATIAFGMGIDKE 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
++ VIHY LP+S+E Y QEIGRAGRD S C + + L + +Y D D I
Sbjct: 296 NIRKVIHYDLPKSIEGYSQEIGRAGRDDAPSLCCVLANRNGLPVLENFIYGDTPDMDGIR 355
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI-----QYLQLLP 604
L + S ++ + + SR DI+ + TLL LE+ +I Y + P
Sbjct: 356 FALDSI----KQSLSRVFEVRPYTLSRDSDIRLLPLKTLLVYLEMADIISPKFTYFEQYP 411
Query: 605 ELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQ 664
++ + T ++ V TI S+T + DI + + G+ V
Sbjct: 412 ---FQFLVSAAEITENFDNERISFVRTIFSHSKTAKTWTYPDIDAIVSESGSDRQRVLAA 468
Query: 665 LLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAV 724
L +G I + + Y I+ D ++ +L E E+ ++ M +
Sbjct: 469 LEYFHGKGWIDLQPRSGVEVYDILAPDFDTDQMAEYLMALFKEKEDKDAARIHAMID--M 526
Query: 725 FAVDVC 730
F D C
Sbjct: 527 FEKDRC 532
>gi|126172636|ref|YP_001048785.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS155]
gi|386339411|ref|YP_006035777.1| RecQ familyATP-dependent DNA helicase [Shewanella baltica OS117]
gi|125995841|gb|ABN59916.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS155]
gi|334861812|gb|AEH12283.1| ATP-dependent DNA helicase, RecQ family [Shewanella baltica OS117]
Length = 607
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 208/357 (58%), Gaps = 13/357 (3%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
+ D+ L + L V+GY FRDGQ E I+ V + ++++PTG GKSLCYQ+PA+++ G
Sbjct: 7 DTHDDPLSQRLAQVFGYRDFRDGQREVIERVCGGQDCLVIMPTGGGKSLCYQLPALLMDG 66
Query: 243 LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
+T+VV PL++LM DQ+ L + +L+SS E+ AE +R ++ G +K+L+VSPER
Sbjct: 67 ITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLYVSPERL 126
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L+ADF+ + L ++ +DEAHC+S+W H+FRP Y L L+ ++A+TAT
Sbjct: 127 LSADFIERMQSLQL-AMFAIDEAHCISQWGHDFRPEYAAL--GQLKQLFPYVPMMALTAT 183
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
A T + + L I L+ R N++ +V+ N R F ++
Sbjct: 184 ADQATRQSICERLGIDPFRLLSSFD-RPNIRYTVAEKLNAANQLRH------FLTQQNGT 236
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
+ I S + D ++ LC + K+YH+G+ +DR +Q+ F ++I +VVATVA
Sbjct: 237 NGIIYCSSRRR--VDEVADRLCLQGFNAKAYHAGMTQEDRGAVQDSFLKDQIDIVVATVA 294
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
FGMG++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 295 FGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLI 351
>gi|343510097|ref|ZP_08747353.1| ATP-dependent DNA helicase RecQ [Vibrio scophthalmi LMG 19158]
gi|342803236|gb|EGU38611.1| ATP-dependent DNA helicase RecQ [Vibrio scophthalmi LMG 19158]
Length = 612
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 206/347 (59%), Gaps = 18/347 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY FR GQ + I+ + K +++++PTG GKSLCYQ+PA++ GLTLV+ PL+
Sbjct: 20 VLEQVFGYQQFRSGQEQVIEAAIQGKDSLVIMPTGGGKSLCYQVPALVREGLTLVISPLI 79
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++SS EE+ + GA+K+++VSPER L DF+
Sbjct: 80 SLMKDQVDQLKADGVAAECINSSMPREELISVYNRMNSGALKLVYVSPERVLMRDFIERL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
SL S++ VDEAHC+S+W H+FRP Y L L+ +A+TATA T D+
Sbjct: 140 QGVSL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKHYFPHVPFMALTATADDATRNDI 196
Query: 371 MSALEI--PLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+S L++ PL+ L + R N++ ++ E+ V ++ + + K + +
Sbjct: 197 VSRLQLVEPLNYL--GSFDRPNIRYTLL--------EKHKPVSQIIRYLETQKGHCGIIY 246
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
G + ++++ LC+N I SYH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 247 CGSRKKVEMVTEKLCNNHIRAASYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINK 306
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 307 PNVRFVAHFDIPRNIESYYQETGRAGRDGLPAEAVMLYDPADISWLR 353
>gi|73663307|ref|YP_302088.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495822|dbj|BAE19143.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 592
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 196/333 (58%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GYD++R GQ E I V++ ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 9 FGYDTYRPGQKEIITRVMNHQNVLGVLPTGGGKSICYQVPGLMLGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + IH +L+SS ++ E ++ G I+ L+V+PERF N F+ + S
Sbjct: 69 QVDQLKAMGIHAAYLNSSLTQKQQKEIETQLRKGEIQFLYVAPERFDNVYFIRLLQQLS- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + I+A+TATAT +D+M L
Sbjct: 128 IHLVAFDEAHCISKWGHDFRPSYQDVIHKVFALPQDF-TIVALTATATIEVQKDIMERLN 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I + ++ + R NL V N +R +V E H+++ I+ S + +
Sbjct: 187 IGKHDEVKTSTKRRNLVFKV-----NPTYQRQKFVMEYVKEHKNAAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L +N + YH+G+ K+R Q F +++RVVVAT AFGMG+DK +V VI
Sbjct: 239 EELHDALENNGVDSTIYHAGLSNKEREAAQNDFVYDRVRVVVATNAFGMGIDKSNVRFVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLNSDCILLFSE 331
>gi|160873520|ref|YP_001552836.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS195]
gi|378706760|ref|YP_005271654.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS678]
gi|418025211|ref|ZP_12664191.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS625]
gi|160859042|gb|ABX47576.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS195]
gi|315265749|gb|ADT92602.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS678]
gi|353535624|gb|EHC05186.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS625]
Length = 607
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 208/357 (58%), Gaps = 13/357 (3%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
+ D+ L + L V+GY FRDGQ E I+ V + ++++PTG GKSLCYQ+PA+++ G
Sbjct: 7 DTHDDPLSQRLAQVFGYRDFRDGQREVIERVCGGQDCLVIMPTGGGKSLCYQLPALLMDG 66
Query: 243 LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
+T+VV PL++LM DQ+ L + +L+SS E+ AE +R ++ G +K+L+VSPER
Sbjct: 67 ITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLYVSPERL 126
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L+ADF+ + L ++ +DEAHC+S+W H+FRP Y L L+ ++A+TAT
Sbjct: 127 LSADFIERMQSLQL-AMFAIDEAHCISQWGHDFRPEYAAL--GQLKQLFPYVPMMALTAT 183
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
A T + + L I L+ R N++ +V+ N R F ++
Sbjct: 184 ADQATRQSICERLGIDPFRLLSSFD-RPNIRYTVAEKLNAANQLRH------FLTQQNGT 236
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
+ I S + D ++ LC + K+YH+G+ +DR +Q+ F ++I +VVATVA
Sbjct: 237 NGIIYCSSRRR--VDEVADRLCLQGFNAKAYHAGMTQEDRGAVQDSFLKDQIDIVVATVA 294
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
FGMG++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 295 FGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLI 351
>gi|402301032|ref|ZP_10820450.1| ATP-dependent DNA helicase RecS [Bacillus alcalophilus ATCC 27647]
gi|401723839|gb|EJS97263.1| ATP-dependent DNA helicase RecS [Bacillus alcalophilus ATCC 27647]
Length = 703
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 198/336 (58%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ VYGY FR GQ + I+ VL + T+ ++PTG+GKSLCYQIPA++ G+TLV+ PL+
Sbjct: 12 VLKEVYGYSDFRLGQKQVIEQVLQGEDTLAIMPTGSGKSLCYQIPALVSEGITLVISPLI 71
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + G +++S+ +E + + G +++V+PER + F++
Sbjct: 72 SLMKDQVDALAQLGVKGTYINSTLTKKEEMNRLENLAAGVYNLVYVAPERLQHPTFMNSL 131
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
IS V +DEAHC+SEW H+FRPSYM++ + L +LA+TATAT D+
Sbjct: 132 QKIE-ISNVAIDEAHCLSEWGHDFRPSYMQI-PNWLSTLTKRPTVLALTATATDEVKEDL 189
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP+ N++ RDNL L++ + +R Y+ ++ + + + I +
Sbjct: 190 RKHLQIPVDNVVSTGYKRDNLSLTLF-----KGVDRPYYLKQLLN-QKQGQSGIIYATTR 243
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K E+ + + + SV YH G+ R QE F +++ +++AT AFGMG+DK +
Sbjct: 244 KEVES--LYQTILKLGFSVTYYHGGLSEGIRQENQEAFINDQKLIMIATNAFGMGVDKSN 301
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V +IHY LP ++E Y QE GRAGRDG S C LF
Sbjct: 302 VQFIIHYQLPRTIEAYYQEAGRAGRDGEESECILFF 337
>gi|295704335|ref|YP_003597410.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium DSM 319]
gi|294801994|gb|ADF39060.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium DSM 319]
Length = 711
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 197/331 (59%), Gaps = 11/331 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR GQ E+I+ VL+ +T ++PTG GKSLCYQIP+++L G TLV+ PL++
Sbjct: 10 LQSYFGYDSFRKGQEESIRYVLEGHNTACIMPTGGGKSLCYQIPSLLLEGTTLVISPLIS 69
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I +++SS EV + + + +G K+L+V+PER + FL
Sbjct: 70 LMKDQVDTLNAAGIPATYINSSLTHTEVQQRLEEVALGEYKLLYVAPERLESPQFLEQLQ 129
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
I LV VDEAHC+S+W H+FRPSY+R+ L+ N ++ +TATAT D+
Sbjct: 130 MLP-IPLVAVDEAHCISQWGHDFRPSYLRIN-ELISKLSNAPIVMGLTATATPQVREDIC 187
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
AL I + R+NL +V + +R +Y+++ ++ + I+ + +
Sbjct: 188 RALRINEEYTVMTGFERENLSFAVV-----KGQDRISYIEQY--IRKNDQEAGIIYAATR 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+L +R L + ++V YH+G+ A R Q F + ++V++AT AFGMG+DK ++
Sbjct: 241 KDVEELHAR-LQKSGVNVSKYHAGMSANSRDEEQNRFLQDDVQVMIATSAFGMGIDKSNI 299
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
V+HY LP+++E Y QE GRAGRDG S C
Sbjct: 300 RFVLHYQLPKNMESYYQEAGRAGRDGLPSEC 330
>gi|433546511|ref|ZP_20502830.1| ATP-dependent DNA helicase [Brevibacillus agri BAB-2500]
gi|432182228|gb|ELK39810.1| ATP-dependent DNA helicase [Brevibacillus agri BAB-2500]
Length = 591
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GY+SFR+GQ + I+ +L T+ ++PTG GKS+CYQ+PAM+ G+T+V+ PL+
Sbjct: 8 VLQKYFGYESFREGQKKIIESLLAGHDTIGIMPTGGGKSICYQVPAMLFDGVTIVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I ++SS EV E +R+ G K+L+++PER + F ++
Sbjct: 68 SLMKDQVDVLVNMGIAATQINSSLDYSEVRERLRMAARGEYKLLYIAPERLESETFQNLI 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
IS V VDEAHCVS+W H+FRPSY+ + A LR + A+TATAT D+
Sbjct: 128 RNVP-ISFVTVDEAHCVSQWGHDFRPSYLEI-ARFLRTLPERPIVAALTATATPEVTADI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L + L RDNL LSV G NR+ AY+ ++++ + + +
Sbjct: 186 KRQLSLEDERLFITGFGRDNLILSVR-KGENRRGFIQAYL-------KANRQHAGIIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L SV YH+G+ ++R+ QE F + +R +VAT AFGMG+DK +
Sbjct: 238 TRKDVDALHADLAKRGFSVTKYHAGLSEEERAANQEAFLFDDVRTMVATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY++P++LE Y QE GRAGRDG S C L
Sbjct: 298 VRYVIHYNMPKNLEAYYQEAGRAGRDGEPSECILL 332
>gi|386312124|ref|YP_006008289.1| ATP-dependent DNA helicase RecQ [Shewanella putrefaciens 200]
gi|319424749|gb|ADV52823.1| ATP-dependent DNA helicase RecQ [Shewanella putrefaciens 200]
Length = 607
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 206/357 (57%), Gaps = 13/357 (3%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
+ D+ L + L V+GY FRDGQ E I+ V + ++++PTG GKSLCYQ+PA+++ G
Sbjct: 7 DTHDDPLSQRLAQVFGYRDFRDGQREVIERVCGGQDCLVIMPTGGGKSLCYQLPALMMNG 66
Query: 243 LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
+T+VV PL++LM DQ+ L + +L+SS E+ AE +R ++ G +K+L+VSPER
Sbjct: 67 ITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLYVSPERL 126
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L ADF+ + L ++ +DEAHC+S+W H+FRP Y L L+ ++A+TAT
Sbjct: 127 LTADFIERMQSLQL-AMFAIDEAHCISQWGHDFRPEYAAL--GQLKQLFPYVPMMALTAT 183
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
A T + + L I L+ R N++ +V+ N R F ++
Sbjct: 184 ADQATRQSICERLGIDPYRLLSSFD-RPNIRYTVAEKLNAANQLRH------FLLQQNGS 236
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I S + D ++ LC + K+YH+G+ +DR +Q+ F ++I +VVATVA
Sbjct: 237 SGIIYCSSRRR--VDEVADRLCLQGFNAKAYHAGMTQEDRGAVQDSFLKDQIDIVVATVA 294
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
FGMG++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 295 FGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLI 351
>gi|418576852|ref|ZP_13140984.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379324517|gb|EHY91663.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 592
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 196/333 (58%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GYD++R GQ E I V++ ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 9 FGYDTYRPGQKEIITRVMNHQNVLGVLPTGGGKSICYQVPGLMLGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + IH +L+SS ++ E ++ G I+ L+V+PERF N F+ + S
Sbjct: 69 QVDQLKAMGIHAAYLNSSLTQKQQKEIETQLRKGEIQFLYVAPERFDNVYFIRLLQQLS- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + I+A+TATAT +D+M L
Sbjct: 128 IHLVAFDEAHCISKWGHDFRPSYQDVIHKVFALPQDF-TIVALTATATIEVQKDIMERLN 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I + ++ + R NL V N +R +V E H+++ I+ S + +
Sbjct: 187 IGKHDEVKTSTKRRNLVFKV-----NPTYQRQKFVMEYVKEHKNAAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L +N + YH+G+ K+R Q F +++RVVVAT AFGMG+DK +V VI
Sbjct: 239 EELHDALENNGVDSTIYHAGLSNKEREAAQNDFVYDRVRVVVATNAFGMGIDKSNVRFVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLNSDCILLFSE 331
>gi|217971615|ref|YP_002356366.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS223]
gi|217496750|gb|ACK44943.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS223]
Length = 607
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 208/357 (58%), Gaps = 13/357 (3%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
+ D+ L + L V+GY FRDGQ E I+ V + ++++PTG GKSLCYQ+PA+++ G
Sbjct: 7 DTHDDPLSQRLAQVFGYRDFRDGQREVIERVCGGQDCLVIMPTGGGKSLCYQLPALLMDG 66
Query: 243 LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
+T+VV PL++LM DQ+ L + +L+SS E+ AE +R ++ G +K+L+VSPER
Sbjct: 67 ITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLYVSPERL 126
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L+ADF+ + L ++ +DEAHC+S+W H+FRP Y L L+ ++A+TAT
Sbjct: 127 LSADFIERMQSLQL-AMFAIDEAHCISQWGHDFRPEYAAL--GQLKQLFPYVPMMALTAT 183
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
A T + + L I L+ R N++ +V+ N R F ++
Sbjct: 184 ADQATRQSICERLGIDPFRLLSSFD-RPNIRYTVAEKLNAANQLRH------FLTQQNGT 236
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
+ I S + D ++ LC + K+YH+G+ +DR +Q+ F ++I +VVATVA
Sbjct: 237 NGIIYCSSRRR--VDEVADRLCLQGFNAKAYHAGMTQEDRGAVQDSFLKDQIDIVVATVA 294
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
FGMG++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 295 FGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLI 351
>gi|253702373|ref|YP_003023562.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M21]
gi|251777223|gb|ACT19804.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M21]
Length = 599
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 192/328 (58%), Gaps = 12/328 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L V+G+ SFR Q E ++ VL + +++PTG GKSLCYQIPA+ PG LVV PL
Sbjct: 7 QILNDVFGFKSFRSPQHEIVETVLSGRDAFVLMPTGGGKSLCYQIPALCFPGTALVVSPL 66
Query: 251 VALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +S+ E + + G +K+L+V+PER L+ FL
Sbjct: 67 ISLMKDQVDALRENGISAACYNSALGEAEARRVLAQLHAGELKLLYVAPERLLSDGFLER 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
S ISL +DEAHCVS+W H+FRP Y +L +LR ++A+TATA T D
Sbjct: 127 IKPLS-ISLFAIDEAHCVSQWGHDFRPEYAQL--GVLREIFPEIPMIALTATADAQTRGD 183
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++S L + + R N++ SV + N N+ + ++ R + + +S
Sbjct: 184 ILSRLGLQGATCYCAGFDRPNIRYSV-IDKNKPFNQLTGFLSS-----RKDEAGIVYALS 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K E ++R LC I +YH+G+P K+R R+QE F + I++VVATVAFGMG+DK
Sbjct: 238 RKRVEE--VARKLCAAGIKAAAYHAGLPDKERHRVQEAFLKDDIKIVVATVAFGMGIDKS 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDG 517
+V V+HY +P+S+E Y QE GRAGRDG
Sbjct: 296 NVRFVVHYDMPKSIESYYQETGRAGRDG 323
>gi|147673915|ref|YP_001218455.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O395]
gi|227116593|ref|YP_002818489.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O395]
gi|262167384|ref|ZP_06035092.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC27]
gi|146315798|gb|ABQ20337.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O395]
gi|227012043|gb|ACP08253.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O395]
gi|262024186|gb|EEY42879.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC27]
Length = 620
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 203/349 (58%), Gaps = 20/349 (5%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN---ERSAYVDEVFSFHRSSKHYYIL 426
+M Q+ QL++ Q S N + E+ V +V + + + +
Sbjct: 204 IM-----------QRLQLKEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGI 252
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG+
Sbjct: 253 IYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGI 312
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+K +V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 313 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|373947884|ref|ZP_09607845.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS183]
gi|386326268|ref|YP_006022385.1| ATP-dependent DNA helicase RecQ [Shewanella baltica BA175]
gi|333820413|gb|AEG13079.1| ATP-dependent DNA helicase RecQ [Shewanella baltica BA175]
gi|373884484|gb|EHQ13376.1| ATP-dependent DNA helicase RecQ [Shewanella baltica OS183]
Length = 607
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 208/357 (58%), Gaps = 13/357 (3%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
+ D+ L + L V+GY FRDGQ E I+ V + ++++PTG GKSLCYQ+PA+++ G
Sbjct: 7 DTHDDPLSQRLAQVFGYRDFRDGQREVIERVCGGQDCLVIMPTGGGKSLCYQLPALLMDG 66
Query: 243 LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
+T+VV PL++LM DQ+ L + +L+SS E+ AE +R ++ G +K+L+VSPER
Sbjct: 67 ITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLYVSPERL 126
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L+ADF+ + L ++ +DEAHC+S+W H+FRP Y L L+ ++A+TAT
Sbjct: 127 LSADFIERMQSLQL-AMFAIDEAHCISQWGHDFRPEYAAL--GQLKQLFPYVPMMALTAT 183
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
A T + + L I L+ R N++ +V+ N R F ++
Sbjct: 184 ADQATRQSICERLGIDPFRLLSSFD-RPNIRYTVAEKLNAANQLRH------FLTQQNGT 236
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
+ I S + D ++ LC + K+YH+G+ +DR +Q+ F ++I +VVATVA
Sbjct: 237 NGIIYCSSRRR--VDEVADRLCLQGFNAKAYHAGMTQEDRGAVQDSFLKDQIDIVVATVA 294
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
FGMG++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 295 FGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLI 351
>gi|388598278|ref|ZP_10156674.1| ATP-dependent DNA helicase RecQ [Vibrio campbellii DS40M4]
Length = 611
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 207/356 (58%), Gaps = 16/356 (4%)
Query: 183 EASDENLG--RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL 240
E SD L R+L V+GY FRDGQ I ++ + ++++LPTG GKSLCYQIPA++
Sbjct: 8 EQSDSPLTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVR 67
Query: 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
G+TLV+ PL++LM DQ+ L + ++S+ EE+ + G IK+++VSPE
Sbjct: 68 SGITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMYTGHIKLVYVSPE 127
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
R L DF+ L S++ VDEAHC+S+W H+FRP Y L L+ + + +A+T
Sbjct: 128 RVLMRDFIERLENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFSHVPFMALT 184
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATA T RD++ L++ + + R N++ ++ E+ V ++ + +
Sbjct: 185 ATADDATRRDILERLQLNNPEVYLGSFDRPNIRYNLV--------EKHKPVSQIVRYLET 236
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
K + G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVAT
Sbjct: 237 QKGNCGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVAT 296
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
VAFGMG++K +V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 297 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|228473728|ref|ZP_04058475.1| ATP-dependent DNA helicase RecQ [Capnocytophaga gingivalis ATCC
33624]
gi|228274840|gb|EEK13658.1| ATP-dependent DNA helicase RecQ [Capnocytophaga gingivalis ATCC
33624]
Length = 729
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/376 (37%), Positives = 211/376 (56%), Gaps = 25/376 (6%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
L + L+ ++G+ +F+ Q E I+ ++D T +++PTG GKSLCYQ+PA++ G +V+
Sbjct: 8 LQKALKSIFGFSAFKGKQEEIIRSIMDNHHTFVLMPTGGGKSLCYQLPALLKEGTAIVIS 67
Query: 249 PLVALMIDQLRHLPPVIHG--------GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPER 300
PL+ALM +Q+ VI G L+SS E+ + I+ G K+L+V+PE
Sbjct: 68 PLIALMKNQV----DVIRGISGTDKIAHVLNSSLTKGEIRNVMEDIRNGDTKLLYVAPES 123
Query: 301 FLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTA 360
L D + F T IS V VDEAHC+SEW H+FRP Y ++ + R + I+A+TA
Sbjct: 124 -LTKDEYADFLKTINISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGEGI-PIIALTA 181
Query: 361 TATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS 420
TATT D++ L +P +N+ + + R NL V N ++ +V + R
Sbjct: 182 TATTKVQEDILKNLGVPEANVFKSSFNRPNLYYEVRPKTKNINSDIIRFVKQ-----RPG 236
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480
+ I +S K E +++ L N I+ YH+G+ AK R++ Q++F ++ VVVAT+
Sbjct: 237 QSGIIYCLSRKSVEE--LAQTLQVNGITAIPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 294
Query: 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLM 538
AFGMG+DK DV VIHY +P+S+E Y QE GRAGRDG YC F DI +L M
Sbjct: 295 AFGMGIDKPDVRFVIHYDIPKSIESYYQETGRAGRDGGEGYCLAFYCYKDIE--KLEKFM 352
Query: 539 YSDGVDEYAINKFLCQ 554
+ E + + L Q
Sbjct: 353 VGKPIAEQEVGQALLQ 368
>gi|435853843|ref|YP_007315162.1| ATP-dependent DNA helicase RecQ [Halobacteroides halobius DSM 5150]
gi|433670254|gb|AGB41069.1| ATP-dependent DNA helicase RecQ [Halobacteroides halobius DSM 5150]
Length = 586
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 200/337 (59%), Gaps = 13/337 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GYDSFR GQ E I +L K +T+ V+PTG GKSLC+QIPA+ L G+T+V PL
Sbjct: 7 QVLQDYFGYDSFRAGQEEIITSILTKNNTLGVMPTGGGKSLCFQIPALCLAGITIVFSPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L V I F++SS E+ I+ ++ +L+++PER + FLS+
Sbjct: 67 ISLMKDQIDSLQAVGIDATFINSSLSKTEIETRIKKVKSRDYDLLYIAPERLQSNQFLSL 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+SLVVVDEAHC+S+W H+FRP+Y+ L A L + + A TATAT D
Sbjct: 127 LEEIE-VSLVVVDEAHCISQWGHDFRPAYL-LIADFLEELPSNPVVAAFTATATEDVRED 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ + L I S + R NL V + G ++++ YV ++S I+ +
Sbjct: 185 ISNILAIEDSFITSFD--RANLTFKV-IKGEDKRDFIKEYV------AKNSTEAGII-YA 234
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G E D + ++L ++V YH+G+ + R Q+ F ++I++VVAT AFGMG+DK
Sbjct: 235 GTRKEVDNLHKFLQHQDLAVGKYHAGLNKRIRKETQDKFLYDQIKIVVATNAFGMGIDKS 294
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+V VIH+++P+ +E Y QE GRAGRDG S C L
Sbjct: 295 NVRYVIHHNMPQDIESYYQEAGRAGRDGEASECVLLF 331
>gi|399023303|ref|ZP_10725366.1| ATP-dependent DNA helicase, RecQ family [Chryseobacterium sp.
CF314]
gi|398083153|gb|EJL73876.1| ATP-dependent DNA helicase, RecQ family [Chryseobacterium sp.
CF314]
Length = 635
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 201/339 (59%), Gaps = 14/339 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R L+ +GYD FRD Q E I VL++K T+++LPTGAGKSLCYQ+PA++ G+ +V+ PL
Sbjct: 13 RTLKHFWGYDQFRDSQEEIINSVLNEKDTLVLLPTGAGKSLCYQLPALLKEGVCIVISPL 72
Query: 251 VALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
+ALM DQ+ L I +LSS + + G K+L++SPER N FL
Sbjct: 73 LALMKDQVNQLKFRGIEAEYLSSELDEFDAEVIYNRCKDGLTKLLYISPERLTNTQFLQN 132
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
T + S + VDEAHC+SEW +FRPSY ++ R + C LA+TATAT L +
Sbjct: 133 IEETQM-SFIAVDEAHCISEWGQDFRPSYQNIK-EFRRNNPEIHC-LALTATATPKVLEE 189
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ S LE+ + QK+ R+N+++ E S V++ + ++ I+ +
Sbjct: 190 IKSKLELRKPEVFQKSFKRENIKIYTE--------EVSDKFQRVYTILKYTQDSGIVYVR 241
Query: 430 GKHFETDLISRYLCDNSIS-VKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ E +L++ +L +N + V +H+G+ K+++ Q+++ ++ V+++T AFGMG+DK
Sbjct: 242 SRK-EAELLTEFLHNNQLKHVDFFHAGLTTKEKNIKQQIWNNSNSNVLISTNAFGMGIDK 300
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
+V VIHYS SLE Y QEIGRAGRDG+ S+ L +
Sbjct: 301 DNVRFVIHYSPSPSLENYYQEIGRAGRDGKKSFAFLLWN 339
>gi|229524849|ref|ZP_04414254.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae bv. albensis
VL426]
gi|229338430|gb|EEO03447.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae bv. albensis
VL426]
Length = 620
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|343083870|ref|YP_004773165.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
gi|342352404|gb|AEL24934.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
Length = 709
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/360 (39%), Positives = 205/360 (56%), Gaps = 18/360 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ YGYDSFR Q I+ V++KK + ++PTGAGKS+CYQ+PAM+LPGLTLV+ PL+
Sbjct: 6 VLKKFYGYDSFRGQQESVIRQVIEKKDCIALMPTGAGKSVCYQVPAMVLPGLTLVISPLI 65
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L + I FL+S+ E G IK+L+V+PER + +
Sbjct: 66 ALMKDQVDALNEIGIPAAFLNSTMDISEQRYVSDQAMKGGIKLLYVAPERLFSGTHPLVN 125
Query: 311 TATSL-ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ +SLV VDEAHCVS+W H+FRP Y++L A LR LA+TATA T +D
Sbjct: 126 ALKEMNLSLVAVDEAHCVSQWGHDFRPEYLKLGA--LRKAFPDTPFLALTATADKQTRKD 183
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ + L + + R N+ V+L R + VD F HR + + +S
Sbjct: 184 ISARLHLNKPEWFISSFDRPNITYRVTL----RSDGFGKLVD--FLQHRPNDAGIVYCLS 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K E + L N S YH+G+ ++R QE F ++++++VAT+AFGMG+DK
Sbjct: 238 RKSVEN--TAAKLNANGFSALPYHAGLSKENRQENQEKFIKDEVKIIVATIAFGMGIDKS 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL---DDITYFRLRSLMYSDGVDEY 546
+V V+H ++P+++E Y QE GRAGRDG LF D IT L+ ++ S +EY
Sbjct: 296 NVRFVVHTNMPQNIESYYQETGRAGRDGLPGEALLFYSLGDSIT---LKRMIESADNEEY 352
>gi|295133854|ref|YP_003584530.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
gi|294981869|gb|ADF52334.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
Length = 702
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 199/336 (59%), Gaps = 18/336 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q + I+ + D K ++++PTG GKS+CYQ+PA++LP LT+V+ PL+A
Sbjct: 10 LKEYFGYDSFRPLQEKIIQSIFDGKDNLVIMPTGGGKSICYQLPAILLPKLTIVISPLIA 69
Query: 253 LMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I FL+SSQ+ + + I +K+L+V+PE L F
Sbjct: 70 LMKDQVDGLKANGIKAEFLNSSQQVADQESIFQKIDKNELKLLYVAPESL---QILDRFL 126
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+ +DEAHC+S W H+FRP+Y +L L+ R + I+A+TATA T D+
Sbjct: 127 TEENISLIAIDEAHCISSWGHDFRPAYTQL--GYLKKRFSNTPIIALTATADKATRHDIC 184
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF--HRSSKHYYILQIS 429
L IP + + R NL L V RQ + +++ F R S+ I +S
Sbjct: 185 QQLNIPDAKKHISSFDRKNLSLEV------RQGIKR--FEQIIKFIKSRPSESGIIYCLS 236
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K+ T+ ++ L + K+YH+G+ ++R IQ+ F ++K ++ ATVAFGMG+DK
Sbjct: 237 RKN--TEELAEKLQQKGLDAKAYHAGLKHEERESIQDDFINDKTEIICATVAFGMGIDKS 294
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
++ VIHY++P++LE Y QEIGRAGRDG S LF
Sbjct: 295 NIRWVIHYNMPKNLEGYYQEIGRAGRDGLSSDTLLF 330
>gi|229495901|ref|ZP_04389627.1| ATP-dependent DNA helicase RecQ [Porphyromonas endodontalis ATCC
35406]
gi|229317214|gb|EEN83121.1| ATP-dependent DNA helicase RecQ [Porphyromonas endodontalis ATCC
35406]
Length = 702
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 146/387 (37%), Positives = 220/387 (56%), Gaps = 27/387 (6%)
Query: 147 FANKGKRNKSFRGKLSYRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQ 206
FA++ + + +G+ + EL+ E R R E +E +L+ +GY FR Q
Sbjct: 30 FADEPETSSFSQGEGEEILVSQELDDEEVGNRKTRFETPEE----VLQYYWGYSEFRPKQ 85
Query: 207 LEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHL----- 261
E I +L + T+ +LPTG GKS+ +Q+P +++ G+TLVV PL+ALM DQ+ HL
Sbjct: 86 REIIDSILAGRDTLGLLPTGGGKSITFQVPGLMMRGVTLVVTPLIALMRDQVEHLKERNI 145
Query: 262 PPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVV 320
P V IH G S E+ T+ +GA K L++SPER + F +I +S++V
Sbjct: 146 PAVAIHSGMASF-----EIQRTLDNAVLGAYKFLYLSPERIASPLFRAILPQLR-VSMIV 199
Query: 321 VDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSN 380
VDE HC+S+W ++FRPSYMR+ + LR+ L +LA+TATAT DVM L P SN
Sbjct: 200 VDECHCISQWGYDFRPSYMRV--TELRSLLPKAPVLALTATATRVVAEDVMRVLHFPESN 257
Query: 381 LIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISR 440
+IQ++ R N+ V + ++ + + +F +S Y T ++
Sbjct: 258 IIQRSFSRPNVAYVV----RHTSDKAATMLRILFGVPGTSIVY-----CRNRKRTVELAE 308
Query: 441 YLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP 500
YL + IS ++H+G+ +R+ Q + + ++RV+VAT AFGMG+DK DV +VIH+ LP
Sbjct: 309 YLREQGISADAFHAGLTHAERNERQRRWMAGEVRVMVATNAFGMGIDKPDVRSVIHWMLP 368
Query: 501 ESLEEYVQEIGRAGRDGRLSYCHLFLD 527
S EEY QE GRAGRDG+ SY +D
Sbjct: 369 SSPEEYFQEAGRAGRDGKKSYAVALVD 395
>gi|424589454|ref|ZP_18028911.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1037(10)]
gi|408037483|gb|EKG73878.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1037(10)]
Length = 611
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 18 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 138 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 195 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 352
>gi|52549818|gb|AAU83667.1| DNA helicase [uncultured archaeon GZfos32E7]
Length = 781
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/354 (39%), Positives = 208/354 (58%), Gaps = 19/354 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+ + +FR Q E I VL +K+T+ +LPTG GKS+C+QIPA+I GLT+VV PL+
Sbjct: 14 ILNSVFNHHTFRSRQEEIISNVLAQKNTLAILPTGVGKSICFQIPALIFDGLTVVVSPLI 73
Query: 252 ALMIDQLRHLPPVIHGGFLSS---SQRPEEVAETI-RLIQVGAIKVLFVSPERFLNADFL 307
ALM DQ+ +L HG F ++ S + E I +L++ +K+L+V+PE F++ +
Sbjct: 74 ALMKDQVDNLKK--HGIFEAAYINSMLDQATKERIHKLLKESKLKMLYVAPETFVDNKLM 131
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
SI T ISL+ +DE HC+S W HNFRP Y+RL+ + +L +TATAT T
Sbjct: 132 SIL-KTCNISLIAIDEVHCISVWGHNFRPDYLRLQRVIADLHNPPPPVLGLTATATRTVE 190
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ L I ++ + + R NL SV NN + E S + + + S Y+
Sbjct: 191 EDIQKQLGIE-CDVFKDSFDRKNLLFSVIPMKNNNRKELS--LKRLLGQLKGSTIVYV-- 245
Query: 428 ISGKHFE--TDLISRYLCDNSISVKSYHSGI-PAKDRSRIQELFCSNKIRVVVATVAFGM 484
+F + ++ YL D+ +S YH I +++R RIQ F + + R+VVAT AFGM
Sbjct: 246 ----NFTKTAEWLATYLADSGLSASYYHGQIRDSEERKRIQNDFINGRTRIVVATNAFGM 301
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
G+DK D+ A+IHY+LP+S+E Y QE+GRAGRD +S C L +LR L+
Sbjct: 302 GIDKEDIRAIIHYNLPKSIENYYQEVGRAGRDQNISNCILLYSKGDEIQLRKLI 355
>gi|373111502|ref|ZP_09525757.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 10230]
gi|423131855|ref|ZP_17119530.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 12901]
gi|423135590|ref|ZP_17123236.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 101113]
gi|423330145|ref|ZP_17307945.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 3837]
gi|371640169|gb|EHO05774.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 10230]
gi|371640694|gb|EHO06290.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 101113]
gi|371640856|gb|EHO06450.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 12901]
gi|404602617|gb|EKB02313.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 3837]
Length = 731
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/372 (37%), Positives = 208/372 (55%), Gaps = 16/372 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L + L+ +G+ F+ Q + +K ++ +T +++PTG GKSLCYQ+PA++L G +VV
Sbjct: 7 DLHKELKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLEGTAIVV 66
Query: 248 CPLVALM---IDQLRHLPPVIHG--GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
PL+ALM +D +R L HG L+SS E+A+ I+ G K+L+V+PE
Sbjct: 67 SPLIALMKNQVDAIRSLSSE-HGVAHVLNSSLTKTEIAQVKEDIKSGITKLLYVAPESLT 125
Query: 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
+++S L S V +DEAHC+SEW H+FRP Y LR +++R+ ++ I+ +TATA
Sbjct: 126 KEEYVSFLQGEKL-SFVAIDEAHCISEWGHDFRPEYRNLR-NIIRSLGDI-PIIGLTATA 182
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
T D++ LEIP +N + + R NL + N + + ++ + K
Sbjct: 183 TPKVQEDILKNLEIPNANTFKASFNRPNLFYEIRPKTKNVETDIIRFIKQ-----HQGKS 237
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
I +S K E I+ L N IS YH+G+ AK R++ Q++F + VVVAT+AF
Sbjct: 238 GVIYCLSRKKVEE--IANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAF 295
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
GMG+DK DV VIH+ +P+SLE Y QE GRAGRDG +C + +L M
Sbjct: 296 GMGIDKPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMAGKP 355
Query: 543 VDEYAINKFLCQ 554
V E I L Q
Sbjct: 356 VAEQEIGYALLQ 367
>gi|156972686|ref|YP_001443593.1| ATP-dependent DNA helicase RecQ [Vibrio harveyi ATCC BAA-1116]
gi|156524280|gb|ABU69366.1| hypothetical protein VIBHAR_00344 [Vibrio harveyi ATCC BAA-1116]
Length = 625
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 207/356 (58%), Gaps = 16/356 (4%)
Query: 183 EASDENLG--RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL 240
E SD L R+L V+GY FRDGQ I ++ + ++++LPTG GKSLCYQIPA++
Sbjct: 22 EQSDSPLTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVR 81
Query: 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
G+TLV+ PL++LM DQ+ L + ++S+ EE+ + G IK+++VSPE
Sbjct: 82 SGITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMYTGHIKLVYVSPE 141
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
R L DF+ L S++ VDEAHC+S+W H+FRP Y L L+ + + +A+T
Sbjct: 142 RVLMRDFIERLENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFSHVPFMALT 198
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATA T RD++ L++ + + R N++ ++ E+ V ++ + +
Sbjct: 199 ATADDATRRDILDRLQLNNPEVYLGSFDRPNIRYNLV--------EKHKPVSQIVRYLET 250
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
K + G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVAT
Sbjct: 251 QKGNCGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVAT 310
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
VAFGMG++K +V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 311 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 366
>gi|429888125|ref|ZP_19369618.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae PS15]
gi|429224784|gb|EKY31102.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae PS15]
Length = 620
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLTREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|422305600|ref|ZP_16392796.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1035(8)]
gi|408628475|gb|EKL01222.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1035(8)]
Length = 611
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 18 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 138 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 195 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMLTEKLCSNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 352
>gi|161582034|ref|NP_229853.2| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|379740087|ref|YP_005332056.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae IEC224]
gi|417811271|ref|ZP_12457937.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-49A2]
gi|417815025|ref|ZP_12461666.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HCUF01]
gi|417822345|ref|ZP_12468945.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE48]
gi|418330899|ref|ZP_12941859.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-06A1]
gi|418335866|ref|ZP_12944769.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-23A1]
gi|418342438|ref|ZP_12949250.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-28A1]
gi|418347611|ref|ZP_12952349.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-43A1]
gi|418353167|ref|ZP_12955894.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-61A1]
gi|419824659|ref|ZP_14348170.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1033(6)]
gi|421315437|ref|ZP_15766011.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1032(5)]
gi|421318988|ref|ZP_15769550.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1038(11)]
gi|421323026|ref|ZP_15773559.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1041(14)]
gi|421326494|ref|ZP_15777013.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1042(15)]
gi|421330426|ref|ZP_15780911.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1046(19)]
gi|421334020|ref|ZP_15784493.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1048(21)]
gi|421337925|ref|ZP_15788367.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-20A2]
gi|421345358|ref|ZP_15795746.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-46A1]
gi|421350031|ref|ZP_15800399.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-25]
gi|422890228|ref|ZP_16932668.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-40A1]
gi|422901023|ref|ZP_16936417.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-48A1]
gi|422905194|ref|ZP_16940063.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-70A1]
gi|422911938|ref|ZP_16946476.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HFU-02]
gi|422921444|ref|ZP_16954674.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae BJG-01]
gi|422924406|ref|ZP_16957463.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-38A1]
gi|423143466|ref|ZP_17131092.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-19A1]
gi|423148448|ref|ZP_17135818.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-21A1]
gi|423152234|ref|ZP_17139456.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-22A1]
gi|423155026|ref|ZP_17142169.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-32A1]
gi|423158891|ref|ZP_17145869.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-33A2]
gi|423163555|ref|ZP_17150362.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-48B2]
gi|423729565|ref|ZP_17702898.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-17A1]
gi|423745963|ref|ZP_17711086.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-50A2]
gi|423890179|ref|ZP_17725115.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-62A1]
gi|423924715|ref|ZP_17729728.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-77A1]
gi|424000739|ref|ZP_17743841.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-17A2]
gi|424004900|ref|ZP_17747897.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-37A1]
gi|424022697|ref|ZP_17762372.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-62B1]
gi|424025715|ref|ZP_17765344.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-69A1]
gi|424585089|ref|ZP_18024695.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1030(3)]
gi|424593717|ref|ZP_18033068.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1040(13)]
gi|424597647|ref|ZP_18036858.1| ATP-dependent DNA helicase RecQ [Vibrio Cholerae CP1044(17)]
gi|424600419|ref|ZP_18039587.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1047(20)]
gi|424605327|ref|ZP_18044303.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1050(23)]
gi|424609045|ref|ZP_18047916.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-39A1]
gi|424611960|ref|ZP_18050779.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-41A1]
gi|424615844|ref|ZP_18054548.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-42A1]
gi|424620598|ref|ZP_18059135.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-47A1]
gi|424643415|ref|ZP_18081182.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-56A2]
gi|424651343|ref|ZP_18088878.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-57A2]
gi|424655296|ref|ZP_18092607.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-81A2]
gi|443502247|ref|ZP_21069249.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-64A1]
gi|443506147|ref|ZP_21072955.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-65A1]
gi|443509985|ref|ZP_21076668.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-67A1]
gi|443513827|ref|ZP_21080381.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-68A1]
gi|443517631|ref|ZP_21084066.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-71A1]
gi|443522220|ref|ZP_21088479.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-72A2]
gi|443529152|ref|ZP_21095173.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-7A1]
gi|443533890|ref|ZP_21099822.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-80A1]
gi|443540108|ref|ZP_21105959.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-81A1]
gi|340045414|gb|EGR06357.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HCUF01]
gi|340045971|gb|EGR06907.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-49A2]
gi|340049588|gb|EGR10502.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE48]
gi|341626483|gb|EGS51872.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-70A1]
gi|341628175|gb|EGS53450.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-48A1]
gi|341628480|gb|EGS53726.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-40A1]
gi|341641806|gb|EGS66325.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HFU-02]
gi|341648893|gb|EGS72908.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae BJG-01]
gi|341649090|gb|EGS73091.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-38A1]
gi|356422714|gb|EHH76185.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-06A1]
gi|356423432|gb|EHH76883.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-21A1]
gi|356427543|gb|EHH80791.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-19A1]
gi|356434248|gb|EHH87429.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-23A1]
gi|356435779|gb|EHH88928.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-22A1]
gi|356438558|gb|EHH91573.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-28A1]
gi|356444285|gb|EHH97096.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-32A1]
gi|356448332|gb|EHI01104.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-43A1]
gi|356451141|gb|EHI03843.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-33A2]
gi|356455360|gb|EHI08003.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-61A1]
gi|356456752|gb|EHI09337.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-48B2]
gi|378793597|gb|AFC57068.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae IEC224]
gi|395922926|gb|EJH33739.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1032(5)]
gi|395924346|gb|EJH35149.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1041(14)]
gi|395926264|gb|EJH37052.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1038(11)]
gi|395934825|gb|EJH45562.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1042(15)]
gi|395936113|gb|EJH46842.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1046(19)]
gi|395938083|gb|EJH48781.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1048(21)]
gi|395947099|gb|EJH57756.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-20A2]
gi|395948728|gb|EJH59366.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-46A1]
gi|395955138|gb|EJH65741.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-25]
gi|395964752|gb|EJH74949.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-56A2]
gi|395964962|gb|EJH75150.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-57A2]
gi|395967722|gb|EJH77772.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-42A1]
gi|395976765|gb|EJH86206.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-47A1]
gi|395979404|gb|EJH88755.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1030(3)]
gi|395979993|gb|EJH89302.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1047(20)]
gi|408011183|gb|EKG49013.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-39A1]
gi|408018033|gb|EKG55503.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-41A1]
gi|408038249|gb|EKG74601.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1040(13)]
gi|408045701|gb|EKG81507.1| ATP-dependent DNA helicase RecQ [Vibrio Cholerae CP1044(17)]
gi|408047549|gb|EKG83162.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1050(23)]
gi|408058109|gb|EKG92929.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-81A2]
gi|408612488|gb|EKK85827.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae CP1033(6)]
gi|408628389|gb|EKL01142.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-17A1]
gi|408644451|gb|EKL16136.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-50A2]
gi|408659856|gb|EKL30889.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-77A1]
gi|408660756|gb|EKL31758.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-62A1]
gi|408850061|gb|EKL90047.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-37A1]
gi|408850390|gb|EKL90354.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-17A2]
gi|408875954|gb|EKM15091.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-62B1]
gi|408882282|gb|EKM21122.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-69A1]
gi|443433407|gb|ELS75915.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-64A1]
gi|443437237|gb|ELS83336.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-65A1]
gi|443441070|gb|ELS90740.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-67A1]
gi|443444882|gb|ELS98141.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-68A1]
gi|443448736|gb|ELT05353.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-71A1]
gi|443451781|gb|ELT12026.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-72A2]
gi|443459995|gb|ELT27385.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-7A1]
gi|443462939|gb|ELT33958.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-80A1]
gi|443464395|gb|ELT39058.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-81A1]
Length = 611
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 18 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 138 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 195 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 352
>gi|251810152|ref|ZP_04824625.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
BCM-HMP0060]
gi|251806323|gb|EES58980.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
BCM-HMP0060]
Length = 604
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 200/353 (56%), Gaps = 11/353 (3%)
Query: 177 VRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIP 236
+R +++ + + L +GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P
Sbjct: 1 MRKLKNNKGNVIMQETLSHYFGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVP 60
Query: 237 AMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLF 295
++ G T+V+ PL++LM DQ+ L + I +L+SS ++ E I+ GAI+ L+
Sbjct: 61 GLMQGGTTIVISPLISLMKDQVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLY 120
Query: 296 VSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECI 355
V+PERF N FL++ I L+ DEAHC+S+W H+FRPSY + + N I
Sbjct: 121 VAPERFENTFFLNLLRKIE-IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TI 178
Query: 356 LAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFS 415
+A+TATAT +D+MS L I +++++ + R NL V N +R +V + +
Sbjct: 179 VALTATATAEVQQDIMSKLSIGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVA 233
Query: 416 FHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
H I+ S + + + + L I YH+G+ K+R Q F +++ V
Sbjct: 234 NHEGQAG--IIYCSTRK-QVEELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEV 290
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
V+AT AFGMG+DK +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 291 VIATNAFGMGIDKSNVRYVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 343
>gi|431740343|ref|ZP_19529259.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2039]
gi|430603491|gb|ELB41015.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium E2039]
Length = 590
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 196/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GYD FR GQ E I+ V+D+++ + ++PTG+GKS+CYQ+P+++L G+T+VV PL+
Sbjct: 4 LLKQYFGYDEFRPGQKEIIQKVIDQENVLGIMPTGSGKSICYQLPSLLLDGITVVVSPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I +L+++PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYCLLYIAPERFIMPDFIQAM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A L N I+A+TATAT D+
Sbjct: 124 NRWN-VCMIAIDEAHCISQWGHDFRPSYLQM-AKQLDQLPNRPVIVALTATATIQVAADI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 182 KRLLKIPDGNHIQTGFGRENLRFQVV-----KDQKKEQYLVEYLKINKNQSG---IIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L S+ YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 234 TRKEVDRIYHLLKKFGFSIGRYHGGLKENERTAMQEAFLYDRLQLIVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 294 VRFVIHYQIPGSLEAYYQEAGRAGRDG 320
>gi|120597203|ref|YP_961777.1| ATP-dependent DNA helicase RecQ [Shewanella sp. W3-18-1]
gi|146291576|ref|YP_001182000.1| ATP-dependent DNA helicase RecQ [Shewanella putrefaciens CN-32]
gi|120557296|gb|ABM23223.1| ATP-dependent DNA helicase RecQ [Shewanella sp. W3-18-1]
gi|145563266|gb|ABP74201.1| ATP-dependent DNA helicase RecQ [Shewanella putrefaciens CN-32]
Length = 607
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/357 (36%), Positives = 206/357 (57%), Gaps = 13/357 (3%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
+ D+ L + L V+GY FRDGQ E I+ + + ++++PTG GKSLCYQ+PA+++ G
Sbjct: 7 DTHDDPLSQRLAQVFGYRDFRDGQREVIERICGGQDCLVIMPTGGGKSLCYQLPALMMNG 66
Query: 243 LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
+T+VV PL++LM DQ+ L + +L+SS E+ AE +R ++ G +K+L+VSPER
Sbjct: 67 ITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLYVSPERL 126
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L ADF+ + L ++ +DEAHC+S+W H+FRP Y L L+ ++A+TAT
Sbjct: 127 LTADFIERMQSLQL-AMFAIDEAHCISQWGHDFRPEYAAL--GQLKQLFPYVPMMALTAT 183
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
A T + + L I L+ R N++ +V+ N R F ++
Sbjct: 184 ADQATRQSICERLGIDPYRLLSSFD-RPNIRYTVAEKLNAANQLRH------FLLQQNGS 236
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I S + D ++ LC + K+YH+G+ +DR +Q+ F ++I +VVATVA
Sbjct: 237 SGIIYCSSRRR--VDEVADRLCLQGFNAKAYHAGMTQEDRGAVQDSFLKDQIDIVVATVA 294
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
FGMG++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 295 FGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLI 351
>gi|407072033|ref|ZP_11102871.1| ATP-dependent DNA helicase RecQ [Vibrio cyclitrophicus ZF14]
Length = 612
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 203/348 (58%), Gaps = 12/348 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY SFRDGQ E I + ++ K +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 20 ILQDVFGYQSFRDGQQEVIDLAVEGKDSLVIMPTGGGKSLCYQIPALVREGLTLVISPLI 79
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++SS E++ + G +K+++VSPER L DF+
Sbjct: 80 SLMKDQVDQLKANGVAAECINSSMPREKLISVFNRMNSGQLKMVYVSPERVLMRDFIERL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++ VDEAHC+S+W H+FRP Y L L+ +A+TATA T +D+
Sbjct: 140 QGLPL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKQYFPHVPYMALTATADDATRKDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L++ + + R N++ ++ E+ V +V + + K + G
Sbjct: 197 ISRLQLVEPHTYLGSFDRPNIRYNLV--------EKHKPVSQVVRYLETQKGNCGIIYCG 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N + YH+G+ +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 249 SRKKVEMVTEKLCNNGLRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
V V+H+ +P ++E Y QE GRAGRDG + + D LR ++
Sbjct: 309 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADMGWLRRML 356
>gi|390941990|ref|YP_006405751.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
gi|390415418|gb|AFL82996.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
Length = 711
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 196/336 (58%), Gaps = 12/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GY FR Q + I+ VL KK T++++PTG GKS+CYQ+PAMI GLTLV+ PL+
Sbjct: 13 ILKEFFGYSEFRGNQKQIIQSVLSKKDTIVLMPTGGGKSVCYQVPAMIFDGLTLVISPLI 72
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF-LSI 309
+LM DQ+ L I FL+SSQ E IQ G IK+L+++PER D+ L
Sbjct: 73 SLMKDQVDALNANGIPAAFLNSSQSQSEQRFISSQIQSGKIKLLYIAPERLYRGDYPLID 132
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F T +SLV +DEAHCVS+W H+FRP Y+++ LR +A+TATA T +D
Sbjct: 133 FLKTVNLSLVAIDEAHCVSQWGHDFRPEYLKI--GELRKSFPQIPFIALTATADKLTRKD 190
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L + + R N+ V+ + + + E FH+ I +S
Sbjct: 191 IADKLGLKTPQWFISSFDRSNITYRVTA-----KRDAMGKLLEFLDFHKKDSGV-IYCLS 244
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K+ E + L +S YH+G+P ++R + QELF ++++++VAT+AFGMG+DK
Sbjct: 245 RKNVEE--TASELQARGLSALPYHAGLPREEREKNQELFIKDEVKIMVATIAFGMGIDKS 302
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+V V+H ++P+++E Y QE GRAGRDG S LF
Sbjct: 303 NVRFVVHMNMPQNVEGYYQETGRAGRDGLPSDALLF 338
>gi|229527301|ref|ZP_04416694.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 12129(1)]
gi|229335309|gb|EEO00793.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 12129(1)]
Length = 620
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCSNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|433659081|ref|YP_007276460.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus BB22OP]
gi|432509769|gb|AGB11286.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus BB22OP]
Length = 611
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/356 (35%), Positives = 209/356 (58%), Gaps = 16/356 (4%)
Query: 183 EASDENLG--RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL 240
E SD ++ R+L V+GY +FRDGQ E I ++ K +++++PTG GKSLCYQIPA++
Sbjct: 8 EQSDSSVTPQRVLEEVFGYQTFRDGQQEVIASAVEGKDSLVIMPTGGGKSLCYQIPALVR 67
Query: 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
G+TLV+ PL++LM DQ+ L + ++S+ EE+ + G +K+++VSPE
Sbjct: 68 SGITLVISPLISLMKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPE 127
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
R L DF+ L +++ VDEAHC+S+W H+FRP Y L L+ + +A+T
Sbjct: 128 RVLMRDFIERLENLPL-AMIAVDEAHCISQWGHDFRPEYAAL--GQLKQHFSHVPFMALT 184
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATA T RD++ L + ++ + R N++ ++ E+ + ++ + +
Sbjct: 185 ATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLV--------EKHKPISQIIRYLDT 236
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
K + G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVAT
Sbjct: 237 QKGNCGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVAT 296
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
VAFGMG++K +V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 297 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|418411244|ref|ZP_12984512.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
BVS058A4]
gi|410892788|gb|EKS40579.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
BVS058A4]
Length = 592
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 193/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLYVAPERFENTFFLNLLRKIE- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L + I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNNEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLTSECILLFSE 331
>gi|343516209|ref|ZP_08753250.1| ATP-dependent DNA helicase RecQ [Vibrio sp. N418]
gi|342796629|gb|EGU32302.1| ATP-dependent DNA helicase RecQ [Vibrio sp. N418]
Length = 612
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 206/347 (59%), Gaps = 18/347 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY FR GQ + I+ + K +++++PTG GKSLCYQ+PA++ GLTLV+ PL+
Sbjct: 20 VLEQVFGYQQFRSGQEQVIEAAIQGKDSLVIMPTGGGKSLCYQVPALVREGLTLVISPLI 79
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++SS EE+ + GA+K+++VSPER L DF+
Sbjct: 80 SLMKDQVDQLKADGVAAECINSSMPREELISVYNRMNSGALKLVYVSPERVLMRDFIERL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
SL S++ VDEAHC+S+W H+FRP Y L L+ +A+TATA T D+
Sbjct: 140 QGVSL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKHYFPHVPFMALTATADDATRNDI 196
Query: 371 MSALEI--PLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+S L++ PL+ L + R N++ ++ E+ V ++ + + K + +
Sbjct: 197 VSRLQLVEPLNYL--GSFDRPNIRYTLL--------EKHKPVSQIIRYLDTQKGHCGIIY 246
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
G + ++++ LC+N I SYH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 247 CGSRKKVEMVTEKLCNNHIRAASYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINK 306
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 307 PNVRFVAHFDIPRNIESYYQETGRAGRDGLPAEAVMLYDPADISWLR 353
>gi|254291619|ref|ZP_04962408.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae AM-19226]
gi|150422476|gb|EDN14434.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae AM-19226]
Length = 620
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|384423525|ref|YP_005632883.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae LMA3984-4]
gi|327483078|gb|AEA77485.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae LMA3984-4]
Length = 620
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNSMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|121587570|ref|ZP_01677336.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 2740-80]
gi|121728001|ref|ZP_01681040.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae V52]
gi|153800796|ref|ZP_01955382.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MZO-3]
gi|153818546|ref|ZP_01971213.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae NCTC 8457]
gi|153821590|ref|ZP_01974257.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae B33]
gi|153825932|ref|ZP_01978599.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MZO-2]
gi|227080417|ref|YP_002808968.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae M66-2]
gi|229507002|ref|ZP_04396510.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae BX 330286]
gi|229509372|ref|ZP_04398855.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae B33]
gi|229512489|ref|ZP_04401961.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae TMA 21]
gi|229516319|ref|ZP_04405767.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC9]
gi|229606510|ref|YP_002877158.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MJ-1236]
gi|254851325|ref|ZP_05240675.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MO10]
gi|255744009|ref|ZP_05417963.1| ATP-dependent DNA helicase RecQ [Vibrio cholera CIRS 101]
gi|262153632|ref|ZP_06028759.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae INDRE 91/1]
gi|360036832|ref|YP_004938595.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 str.
2010EL-1786]
gi|440712130|ref|ZP_20892755.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 4260B]
gi|449054605|ref|ZP_21733273.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 str. Inaba
G4222]
gi|9654602|gb|AAF93372.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121548208|gb|EAX58278.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 2740-80]
gi|121629704|gb|EAX62123.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae V52]
gi|124123627|gb|EAY42370.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MZO-3]
gi|126510885|gb|EAZ73479.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae NCTC 8457]
gi|126520877|gb|EAZ78100.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae B33]
gi|149740340|gb|EDM54476.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MZO-2]
gi|227008305|gb|ACP04517.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae M66-2]
gi|229346745|gb|EEO11715.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC9]
gi|229350488|gb|EEO15436.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae TMA 21]
gi|229353687|gb|EEO18624.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae B33]
gi|229356107|gb|EEO21026.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae BX 330286]
gi|229369165|gb|ACQ59588.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MJ-1236]
gi|254847030|gb|EET25444.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae MO10]
gi|255738274|gb|EET93665.1| ATP-dependent DNA helicase RecQ [Vibrio cholera CIRS 101]
gi|262030573|gb|EEY49210.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae INDRE 91/1]
gi|356647986|gb|AET28041.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 str.
2010EL-1786]
gi|439972140|gb|ELP48437.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 4260B]
gi|448265751|gb|EMB02984.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae O1 str. Inaba
G4222]
Length = 620
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|424038225|ref|ZP_17776853.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-02]
gi|408894628|gb|EKM31275.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-02]
Length = 611
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FRDGQ I ++ + ++++LPTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 18 RVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+++VSPER L DF+
Sbjct: 78 ISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGNLKLVYVSPERVLMRDFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L S++ VDEAHC+S+W H+FRP Y L L+ + + +A+TATA T RD
Sbjct: 138 LENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFSHVPFMALTATADDATRRD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L++ + + R N++ ++ E+ V ++ + + K +
Sbjct: 195 ILERLQLNNPEVYLGSFDRPNIRYNLV--------EKHKPVSQIVRYLETQKGNCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|153834682|ref|ZP_01987349.1| ATP-dependent DNA helicase RecQ [Vibrio harveyi HY01]
gi|148868878|gb|EDL67938.1| ATP-dependent DNA helicase RecQ [Vibrio harveyi HY01]
Length = 611
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/356 (35%), Positives = 207/356 (58%), Gaps = 16/356 (4%)
Query: 183 EASDENLG--RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL 240
E SD L R+L V+GY FRDGQ I ++ + ++++LPTG GKSLCYQIPA++
Sbjct: 8 EQSDSPLTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVR 67
Query: 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
G+TLV+ PL++LM DQ+ L + ++S+ EE+ + G +K+++VSPE
Sbjct: 68 SGITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPE 127
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
R L DF+ L S++ VDEAHC+S+W H+FRP Y L L+ + + +A+T
Sbjct: 128 RVLMRDFIERLENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFSHVPFMALT 184
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATA T RD++ L++ + + R N++ ++ E+ V ++ + +
Sbjct: 185 ATADDATRRDILERLQLNNPEVYLGSFDRPNIRYNLV--------EKHKPVSQIVRYLET 236
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
K + G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVAT
Sbjct: 237 QKGNCGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVAT 296
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
VAFGMG++K +V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 297 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|424044511|ref|ZP_17782123.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-03]
gi|408887908|gb|EKM26398.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-03]
Length = 611
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FRDGQ I ++ + ++++LPTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 18 RVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+++VSPER L DF+
Sbjct: 78 ISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPERVLMRDFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L S++ VDEAHC+S+W H+FRP Y L L+ + + +A+TATA T RD
Sbjct: 138 LENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFSHVPFMALTATADDATRRD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L++ + + R N++ ++ E+ V ++ + + K +
Sbjct: 195 ILERLQLNNPEVYLGSFDRPNIRYNLV--------EKHKPVSQIVRYLETQKGNCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|228470561|ref|ZP_04055418.1| ATP-dependent DNA helicase RecQ [Porphyromonas uenonis 60-3]
gi|228307688|gb|EEK16664.1| ATP-dependent DNA helicase RecQ [Porphyromonas uenonis 60-3]
Length = 734
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 205/369 (55%), Gaps = 14/369 (3%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL LL ++G++ F+ Q E I+ +L+ T +++PTG+GKSLCYQ+PA+I+ G ++V
Sbjct: 4 NLTELLSKIFGFEEFKGNQKEIIQSLLEGHDTFVLMPTGSGKSLCYQLPALIMEGTAIIV 63
Query: 248 CPLVALMIDQLRHLPPVIHGG----FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
PL+ALM +Q+ L L+SS ++ + + + GA K+L+V+PE
Sbjct: 64 SPLIALMKNQVDALRETTGSNDIAHVLNSSLNKAQLDQVYQDVSAGATKLLYVAPESLGK 123
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
A+ + F IS +DEAHC+SEW H+FRP Y ++R + + I+A+TATAT
Sbjct: 124 AENIEFFRKIK-ISFFAIDEAHCISEWGHDFRPEYRKIRPVV--DEIGRRPIIALTATAT 180
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D+ L I N+ + + R NL SV G + N R F R +K
Sbjct: 181 PKVEHDIRKNLGILDGNIFKSSFNRPNLYYSVEPKGED-VNARIIR----FIRKRPNKSG 235
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I +S + +S+ L N I YH+G+ AK+RS Q+ F S + RV+VAT+AFG
Sbjct: 236 IIYCMSREKVMN--LSKLLQMNGIKALPYHAGLDAKERSANQDAFLSEECRVIVATIAFG 293
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK DV VIHY +P+SLE Y QE GRAGRDG YC F ++ +L + M +
Sbjct: 294 MGIDKPDVRYVIHYDMPKSLEGYYQETGRAGRDGGEGYCLAFYNEKDIQKLENFMQGKPI 353
Query: 544 DEYAINKFL 552
E I + L
Sbjct: 354 AEQEIGRQL 362
>gi|153216100|ref|ZP_01950274.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 1587]
gi|124114476|gb|EAY33296.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae 1587]
Length = 620
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|254226334|ref|ZP_04919924.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae V51]
gi|125621139|gb|EAZ49483.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae V51]
Length = 620
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|113476788|ref|YP_722849.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
gi|110167836|gb|ABG52376.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
Length = 731
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/369 (38%), Positives = 214/369 (57%), Gaps = 17/369 (4%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
E + +L + L+ +GYDSFR GQ + I+ L +K ++++PTG GKSLC+Q+PA++ PG
Sbjct: 8 EFNQPSLEQHLKNYFGYDSFRPGQKQIIQTALQQKDLLIIMPTGGGKSLCFQMPALLKPG 67
Query: 243 LTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
LT+VV PL++LM DQ+ L I FL+S+ E I +G IK+L+V+PER
Sbjct: 68 LTIVVSPLISLMQDQVESLKDNGIAATFLNSTLDLTETRRRSTDIILGKIKLLYVAPERL 127
Query: 302 LNA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAM 358
L+ +FL + ++ IS +DEAHCVSEW H+FRP Y +L+ LLR I+A+
Sbjct: 128 LSEKFLEFLELISSQQGISTFAIDEAHCVSEWGHDFRPEYRQLK--LLRETYPDVPIMAL 185
Query: 359 TATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR 418
TATAT D+ + L + + + R NL V + + ++ + E+ R
Sbjct: 186 TATATKRVREDITTQLNLQKPYIHIASFFRSNLYYEV----RQKTSAKNTFA-EILQIIR 240
Query: 419 SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
+ I+ + + D I+ L N++S +YH+G+ ++R+ Q F + + V+VA
Sbjct: 241 TIGGSGIVYCNSRK-RVDEIAYKLRQNNVSALAYHAGMTDEERTTNQTKFIRDDVDVIVA 299
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
TVAFGMG+DK DV VIHY L +++E Y QE GR+GRDG + C LF +Y RS+
Sbjct: 300 TVAFGMGIDKPDVRFVIHYDLSKNIEGYYQETGRSGRDGEPAQCILFF---SYGDKRSIE 356
Query: 539 YSDG--VDE 545
Y G VDE
Sbjct: 357 YLIGQKVDE 365
>gi|350529733|ref|ZP_08908674.1| ATP-dependent DNA helicase RecQ [Vibrio rotiferianus DAT722]
Length = 611
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FRDGQ I ++ + ++++LPTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 18 RVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+++VSPER L DF+
Sbjct: 78 ISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPERVLMRDFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L S++ VDEAHC+S+W H+FRP Y L L+ + + +A+TATA T RD
Sbjct: 138 LENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFSHVPFMALTATADDATRRD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L++ + + R N++ ++ E+ V ++ + + K +
Sbjct: 195 ILERLQLNNPEVYLGSFDRPNIRYNLV--------EKHKPVSQIVRYLETQKGNCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|417998794|ref|ZP_12639009.1| ATP-dependent DNA helicase [Lactobacillus casei T71499]
gi|410540398|gb|EKQ14913.1| ATP-dependent DNA helicase [Lactobacillus casei T71499]
Length = 592
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 195/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI VL +ST++V+PTG GKSLCYQIPAM+L GLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ +E+A+ + + G IK+L+V+PERF + D+
Sbjct: 69 ALMKDQVDALNDNGIPAAFINSTLDYQEIADRLDQARSGRIKLLYVAPERF-DTDWFVQR 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGSTDISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I R NL L V R + Y+ + + I+ S
Sbjct: 187 CQRLAIPADGMINTGFERSNLSLKVV-----RDQDEDRYLLDYLKLNVDQAG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D + +L + V YH+G+ R+ QE F ++ +++AT AFGMG+DK +
Sbjct: 240 RK-EVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ +E Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDVESYYQEAGRAGRDG 325
>gi|117922195|ref|YP_871387.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
gi|117614527|gb|ABK49981.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
Length = 607
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 204/354 (57%), Gaps = 13/354 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D+ L + L V+GY FRDGQ E I+ V + ++++PTG GKSLCYQ+PA+++PG+T+
Sbjct: 10 DDPLSQRLAQVFGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALLMPGITI 69
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
VV PL++LM DQ+ L ++ +L+SSQ E+ E +R + G +K+L+VSPER L
Sbjct: 70 VVSPLISLMKDQVDSLLQTGVNAAYLNSSQPREQSVEVLRQLHRGELKLLYVSPERLLTG 129
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
DF+ + L S+ +DEAHC+S+W H+FRP Y L L+ ++A+TATA
Sbjct: 130 DFIERMRSLPL-SMFAIDEAHCISQWGHDFRPEYAAL--GQLKQLFPHVPMMALTATADQ 186
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
T +++ L I L+ R N++ +V+ N R + + + SS Y
Sbjct: 187 ATRQNICERLGINPFRLLSSFD-RPNIRYTVAEKLNAANQLRQFLLQQ----NGSSGIVY 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
D ++ L K+YH+G+ ++R +Q+ F ++I +VVATVAFGM
Sbjct: 242 ----CSSRRRVDEVAERLILQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATVAFGM 297
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
G++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 298 GINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLI 351
>gi|451851352|gb|EMD64650.1| hypothetical protein COCSADRAFT_355778 [Cochliobolus sativus
ND90Pr]
Length = 725
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 170/548 (31%), Positives = 278/548 (50%), Gaps = 46/548 (8%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---------- 240
++LR +G +SFR Q +AI +LD S ++V PTG GKSLCYQ+PA+
Sbjct: 64 KILRERFGLNSFRLEQEKAITRILDGGSAVVVFPTGGGKSLCYQVPAVAFRYQDEELKQR 123
Query: 241 ----PGLTLVVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLF 295
G+TLV+ PL+ALM DQ+ L I L+SS ++ ++ G + +++
Sbjct: 124 AAGHSGVTLVISPLIALMKDQVDALLRRGIKAAVLNSSISRDQFLAAQDDLRNGRLDLIY 183
Query: 296 VSPERFLNADFL-SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC 354
+PER + F+ S+ I L+ VDEAHC+SEW H+FRP Y+++ + VE
Sbjct: 184 CAPERLNSEGFIASLKNIPGGIRLLAVDEAHCISEWGHSFRPDYLKI--ARFAKEAQVER 241
Query: 355 ILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVF 414
++ +TATAT +D+ SA +IP L + R NL L L+ N ++ + YV ++
Sbjct: 242 VICLTATATPKVAKDIQSAFDIPEEGLFRTTMYRPNLHL---LAEANTKD--ADYVAKLV 296
Query: 415 SFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
+ R I+ ++ + T+ ++ L + K+YH+G+PA RS+ Q+ F S+
Sbjct: 297 AHLRKHHGATIVYVTIQK-GTETLAAELQVQGFNAKAYHAGMPAAVRSKTQDEFLSSPDM 355
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRL 534
+VVAT+AFGMG+DK D+ ++H+ +P+S+E Y Q+IGRAGRDG+ S C +L ++
Sbjct: 356 IVVATIAFGMGIDKPDIRNIVHFDIPDSIESYSQQIGRAGRDGKPSVCMFYLSTKDFYLR 415
Query: 535 RSLMYSDGVDEYAINKFLCQVFTNGMNSH---GKLCSLVKESASRKFDIKEEVMLTLLTC 591
Y D ++ K L Q + ++H G +L + S++ DIK V+ L
Sbjct: 416 NIFTYGDRPSLRSL-KLLMQDICSPAHAHLKAGDTFTLSLYTQSQETDIKPIVLGILYAQ 474
Query: 592 LELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYV-FDIPTV 650
LEL + + L T + K TLL D A+ ++K+ TK ++ + +
Sbjct: 475 LEL-QFNLFRAAGSL-YTKYMYITKDAATLLNDTSP-AASAIRKAATKASKWTHVALDDL 531
Query: 651 ANSIGATTIDVSNQLLNLKMRGEI---------TYELKDPAYCYTIVEVPSDFCALSAHL 701
A S D+ ++ RG I Y L+ P + + P++ + L
Sbjct: 532 AASTSIQRADLVRKIDEWNERGAIELKKEGVQNVYRLERP-----LPQSPTEINDIVQKL 586
Query: 702 TKWLSEVE 709
K + E E
Sbjct: 587 DKSMQETE 594
>gi|410724041|ref|ZP_11363242.1| ATP-dependent DNA helicase RecQ [Clostridium sp. Maddingley
MBC34-26]
gi|410602597|gb|EKQ57075.1| ATP-dependent DNA helicase RecQ [Clostridium sp. Maddingley
MBC34-26]
Length = 816
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 203/338 (60%), Gaps = 11/338 (3%)
Query: 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
G L YGY SFR GQ + I ++ + + ++PTG GKS+CYQIPA++L G+T+V+ P
Sbjct: 6 GDFLEKYYGYKSFRKGQEDIIDKIIKGEDVLAIMPTGGGKSICYQIPALMLDGITIVISP 65
Query: 250 LVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
L++LM DQ+ L + I G ++S+ E +E I ++ G IK+L+++PER + +F++
Sbjct: 66 LISLMKDQVDTLKDMGIKGALINSTLSAVEESEVINNLERGEIKILYIAPERLESYEFIN 125
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
I + + IS + VDEAHC+S+W H+FR SY ++ + + N I A TATA+ +
Sbjct: 126 IISKCN-ISQIAVDEAHCISQWGHDFRVSYRKI-SQFIGLLENRPIITAFTATASEEVQK 183
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+++ L++ + R+NL ++V SG+ ++ Y++ +F S+K +
Sbjct: 184 DIITLLKLKKPKVFITGFDRENLLINVVKSGSKKE-----YLN---NFIESNKEVSGIIY 235
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ E + I L N +V YH+G+ K+R QE F ++ ++VAT AFGMG+DK
Sbjct: 236 AATRKEVENIHGELKTNGYNVTYYHAGLSEKNRKENQENFIFDRSSIMVATNAFGMGIDK 295
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+HY++P ++E Y QEIGRAGRDG S C L
Sbjct: 296 PNIRYVVHYNMPRNIESYYQEIGRAGRDGGNSECILLF 333
>gi|374598547|ref|ZP_09671549.1| ATP-dependent DNA helicase, RecQ family [Myroides odoratus DSM
2801]
gi|423323213|ref|ZP_17301055.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 103059]
gi|373910017|gb|EHQ41866.1| ATP-dependent DNA helicase, RecQ family [Myroides odoratus DSM
2801]
gi|404609764|gb|EKB09128.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 103059]
Length = 731
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 209/373 (56%), Gaps = 18/373 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L + L+ +G+ F+ Q + +K ++ +T +++PTG GKSLCYQ+PA++L G +VV
Sbjct: 7 DLHKELKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLDGTAIVV 66
Query: 248 CPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
PL+ALM +D +R L + H L+SS EV + I+ G K+L+V+PE
Sbjct: 67 SPLIALMKNQVDAIRSLSTEQGIAH--VLNSSLTKTEVNQVKEDIKQGITKLLYVAPESL 124
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
++++ L S V +DEAHC+SEW H+FRP Y LR +++R +L I+ +TAT
Sbjct: 125 TKEEYVNFLQEVKL-SFVAIDEAHCISEWGHDFRPEYRNLR-NIIR-QLGDIPIIGLTAT 181
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
AT D++ LEIP +N+ + + R NL + N +++ ++ + R K
Sbjct: 182 ATPKVQEDILKNLEIPNANVFKASFNRPNLYYEIKPKTKNIESDIIRFIKQ-----RKGK 236
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I +S K E I+ L N IS YH+G+ AK R++ Q++F + VVVAT+A
Sbjct: 237 SGVIYCLSRKKVEE--IANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIA 294
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541
FGMG+DK DV VIH+ +P+SLE Y QE GRAGRDG +C + +L M
Sbjct: 295 FGMGIDKPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGWCLAYYSYKDIEKLEKFMAGK 354
Query: 542 GVDEYAINKFLCQ 554
+ E I L Q
Sbjct: 355 PIAEQEIGIALLQ 367
>gi|420166771|ref|ZP_14673452.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM088]
gi|394233144|gb|EJD78754.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM088]
Length = 592
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 193/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLYVAPERFENTFFLNLLRKIE- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L ++
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFNE 331
>gi|444428652|ref|ZP_21223965.1| ATP-dependent DNA helicase RecQ [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444238126|gb|ELU49752.1| ATP-dependent DNA helicase RecQ [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 611
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 207/356 (58%), Gaps = 16/356 (4%)
Query: 183 EASDENLG--RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL 240
E SD L R+L V+GY FRDGQ I ++ + ++++LPTG GKSLCYQIPA++
Sbjct: 8 EQSDSPLTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVR 67
Query: 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
G+TLV+ PL++LM DQ+ L + ++S+ EE+ + G IK+++VSPE
Sbjct: 68 SGITLVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMYTGHIKLVYVSPE 127
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
R L DF+ L S++ VDEAHC+S+W H+FRP Y L L+ + + +A+T
Sbjct: 128 RVLMRDFIERLENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFSHVPFMALT 184
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATA T RD++ L++ + + R N++ ++ E+ V ++ + +
Sbjct: 185 ATADDATRRDILERLQLNNPEVYLGSFDRPNIRYNLV--------EKHKPVSQIVRYLET 236
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
K + G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVAT
Sbjct: 237 QKGNCGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQESFQRDDIQIVVAT 296
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
VAFGMG++K +V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 297 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|255655720|ref|ZP_05401129.1| ATP-dependent DNA helicase [Clostridium difficile QCD-23m63]
gi|296451727|ref|ZP_06893458.1| ATP-dependent helicase RecQ [Clostridium difficile NAP08]
gi|296878971|ref|ZP_06902969.1| ATP-dependent helicase RecQ [Clostridium difficile NAP07]
gi|296259428|gb|EFH06292.1| ATP-dependent helicase RecQ [Clostridium difficile NAP08]
gi|296429998|gb|EFH15847.1| ATP-dependent helicase RecQ [Clostridium difficile NAP07]
Length = 827
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 205/342 (59%), Gaps = 11/342 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
++ L +L YGY SFR GQ I +L++K + ++PTG GKS+CYQIPA+IL G+T+
Sbjct: 2 NKKLLEILSKYYGYTSFRKGQESIINSILNEKDVLAIMPTGGGKSICYQIPALILDGMTI 61
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ+ L + I F++SS +E E + I+ K+L+++PER
Sbjct: 62 VISPLISLMKDQVDALKAMGISAAFINSSLSSKEFNEILNNIRKNNYKILYIAPERLDAQ 121
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
+FL + + +S V +DEAHCVS+W H+FR SY R+ + +++ + A TATA+
Sbjct: 122 EFLELINNNN-VSQVAIDEAHCVSQWGHDFRLSYRRI-SDFIKSLPKRPIVTAFTATASE 179
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+++ L + + R+NL +++ S + ++ Y+ + H++
Sbjct: 180 EVRIDIINLLCLENPDYYITGFDRENLSINIVKSSS-----KNKYILDYIQNHKNESG-- 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ ++ + E + I L +ISV YH+G+ +RS+ QE F ++ + ++VAT AFGM
Sbjct: 233 IIYVATRK-EVENIYNGLSKRNISVSKYHAGLSKNERSKNQEDFINDNVDIMVATNAFGM 291
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK ++ VIHY++P+S+E Y QEIGRAGRDG S C L
Sbjct: 292 GIDKPNIRWVIHYNMPQSIENYYQEIGRAGRDGEKSECVLLF 333
>gi|52080584|ref|YP_079375.1| ATP-dependent DNA helicase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319645452|ref|ZP_07999684.1| YocI protein [Bacillus sp. BT1B_CT2]
gi|404489470|ref|YP_006713576.1| ATP-dependent DNA helicase YocI [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52003795|gb|AAU23737.1| ATP-dependent DNA helicase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348464|gb|AAU41098.1| putative ATP-dependent DNA helicase YocI [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|317392338|gb|EFV73133.1| YocI protein [Bacillus sp. BT1B_CT2]
Length = 593
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 198/337 (58%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVL-DKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL+ +GY S R GQ +AI+ V+ +K+ T ++PTG GKS+CYQIPA+++ G T+V+ PL
Sbjct: 8 LLQHYFGYPSLRPGQKKAIQSVVSEKRDTACIMPTGGGKSICYQIPALLMEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +++SS E+AE + + + G K+ +V+PER + +F+
Sbjct: 68 ISLMKDQVDALNQLGIQAAYVNSSLGHNEIAERLSVFKEGGYKLFYVTPERLTSPEFIRA 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ I LV +DEAHC+S+W H+FRPSY + L + +LA+TATAT D
Sbjct: 128 ISHIH-IPLVAIDEAHCISQWGHDFRPSYRHIEG-FLNSLGTRPVVLALTATATPEVHED 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ + L I N + RDNL + L G NR +YV++ +RS + +
Sbjct: 186 ICTQLGIEKENTVFTGFSRDNLTFKI-LKGENRDRFIESYVEK----NRSEAG---IIYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E + IS L I+ YH G+ ++R R Q+LF +++I V+ AT AFGMG+DK
Sbjct: 238 ATRKEAERISSRLSQKGIAAGCYHGGMDDEERDRQQDLFLNDEISVMTATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ VIH +P+++E Y QE GRAGRDG S C L
Sbjct: 298 NIRYVIHAQIPKNMESYYQEAGRAGRDGLDSECILLF 334
>gi|343497191|ref|ZP_08735268.1| ATP-dependent DNA helicase RecQ [Vibrio nigripulchritudo ATCC
27043]
gi|342819758|gb|EGU54595.1| ATP-dependent DNA helicase RecQ [Vibrio nigripulchritudo ATCC
27043]
Length = 612
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/350 (37%), Positives = 205/350 (58%), Gaps = 22/350 (6%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L V+GY SFR GQ E I+ L+ K +++++PTG GKSLCYQIPA++ G+TLVV PL
Sbjct: 19 KVLNEVFGYQSFRVGQEEVIQSSLEGKDSLVIMPTGGGKSLCYQIPALVKEGVTLVVSPL 78
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ +E+ + + G +K+++VSPER L DF+
Sbjct: 79 ISLMKDQVDQLKANGVAAECINSTMERDELIKVYNRMNAGQLKLVYVSPERVLTRDFMER 138
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L S++ VDEAHC+S+W H+FR Y L L+ R I+A+TATA T +D
Sbjct: 139 LEHLRL-SMIAVDEAHCISQWGHDFRREYAAL--GELKQRFPYAPIMALTATADEATRKD 195
Query: 370 VMS--ALEIPLSNL--IQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
++S LE PL L + +R NL E+ V +V F + +
Sbjct: 196 IVSRLHLEEPLEYLGSFDRPNIRYNLV------------EKHKPVSQVIRFLATQQGQCG 243
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ G + ++++ LC+N I YH+G+ A +R+ +Q+ F + I+VVVATVAFGMG
Sbjct: 244 VIYCGSRKKVEMLTEKLCNNHIRAAGYHAGMDADERAYVQDAFQKDDIQVVVATVAFGMG 303
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
++K +V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 304 INKPNVRFVLHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWQR 353
>gi|390940709|ref|YP_006404446.1| ATP-dependent DNA helicase RecQ [Sulfurospirillum barnesii SES-3]
gi|390193816|gb|AFL68871.1| ATP-dependent DNA helicase RecQ [Sulfurospirillum barnesii SES-3]
Length = 596
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 196/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+G+ SFR Q EA+ +L K M++LPTGAGKSLCYQ+P++++ G+++V+ PL+
Sbjct: 7 ILQRVFGHHSFRANQEEAVNAILAHKDLMMILPTGAGKSLCYQLPSLVMEGMSVVISPLL 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I +SS Q P ++ E+++ + G +K+L+V+PER FL+ F
Sbjct: 67 ALMHDQITALSAFGIKAAMISSMQSPSQIQESMQACRNGELKLLYVAPERLKGESFLN-F 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ I+ V+DEAHCVSEW H FR Y +L L+ I A TATAT D+
Sbjct: 126 LQSLCINFFVIDEAHCVSEWGHEFREDYRQLFR--LKHYFPRTPIAAFTATATKIVEHDI 183
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L + +I+ RDNL + N + + +++ +F S Y L
Sbjct: 184 LHQLGLSHPLIIRAKVERDNLNIKADYRNANGREQLLSFLS---AFQNESGIVYTLTRK- 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
ET+ ++ +L + +SYH+G+ ++++ F +++I VVVAT+AFGMG+DK +
Sbjct: 240 ---ETESLALFLEGYKVRARSYHAGLSTEEKNETYRAFLNDEIDVVVATIAFGMGIDKSN 296
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
+ V+H SLP+++E Y QEIGRAGRDG
Sbjct: 297 IRFVVHMSLPKTIENYYQEIGRAGRDG 323
>gi|418324954|ref|ZP_12936167.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU071]
gi|420162919|ref|ZP_14669674.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM095]
gi|420167361|ref|ZP_14674022.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM087]
gi|420185986|ref|ZP_14692062.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM040]
gi|365229148|gb|EHM70312.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU071]
gi|394235916|gb|EJD81466.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM095]
gi|394238990|gb|EJD84447.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM087]
gi|394253078|gb|EJD98094.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM040]
Length = 592
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 193/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLYVAPERFENTFFLNLLRKIE- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L + I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNNEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|289551424|ref|YP_003472328.1| ATP-dependent DNA helicase RecQ [Staphylococcus lugdunensis
HKU09-01]
gi|315658933|ref|ZP_07911800.1| ATP-dependent helicase RecQ [Staphylococcus lugdunensis M23590]
gi|385785027|ref|YP_005761200.1| putative ATP-dependent DNA helicase [Staphylococcus lugdunensis
N920143]
gi|418415809|ref|ZP_12989012.1| ATP-dependent DNA helicase RecQ [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418635718|ref|ZP_13198083.1| ATP-dependent DNA helicase RecQ [Staphylococcus lugdunensis VCU139]
gi|289180955|gb|ADC88200.1| ATP-dependent DNA helicase RecQ [Staphylococcus lugdunensis
HKU09-01]
gi|315496057|gb|EFU84385.1| ATP-dependent helicase RecQ [Staphylococcus lugdunensis M23590]
gi|339895283|emb|CCB54607.1| putative ATP-dependent DNA helicase [Staphylococcus lugdunensis
N920143]
gi|374841610|gb|EHS05076.1| ATP-dependent DNA helicase RecQ [Staphylococcus lugdunensis VCU139]
gi|410873667|gb|EKS21601.1| ATP-dependent DNA helicase RecQ [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 593
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 193/338 (57%), Gaps = 11/338 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L +GY SFR GQ E I +L + + VLPTG GKS+CYQIP + L G T+V+ PL+
Sbjct: 4 ILSHYFGYQSFRPGQKEIITKILAHHNVLGVLPTGGGKSICYQIPGLKLGGTTVVISPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + IH +L+SS ++ + + + G I+ L+V+PERF N FLSI
Sbjct: 64 SLMKDQVDQLKAMGIHAAYLNSSLSQKQQKQIEQELASGKIQFLYVAPERFENQYFLSIL 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I L+ DEAHC+S+W H+FRPSY + ++ + ++A+TATATT RD+
Sbjct: 124 RKLE-IHLIAFDEAHCISKWGHDFRPSYQNVIQKVMTLPQDF-VVIALTATATTEVQRDI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
M L I N ++ + R NL V N +R +V + HR I+ S
Sbjct: 182 MDKLYISADNRVKTSTKRRNLIFKV-----NPTYQRQKFVLDYVQAHRDEAG--IIYCST 234
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ + + + + + YH+G+ K+R + Q F ++I+VVVAT AFGMG+DK +
Sbjct: 235 RK-QVEELQEAIQSIDLEAAIYHAGLSNKEREQAQNDFVYDRIKVVVATNAFGMGIDKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 294 VRYVIHYNMPGDLESYYQEAGRAGRDGLKSECILLYSE 331
>gi|269964536|ref|ZP_06178775.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 40B]
gi|269830663|gb|EEZ84883.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 40B]
Length = 640
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FRDGQ I ++ + ++++LPTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 47 RVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPL 106
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+++VSPER L DF+
Sbjct: 107 ISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPERVLMRDFIER 166
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L S++ VDEAHC+S+W H+FRP Y L L+ + + +A+TATA T RD
Sbjct: 167 LENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFSHVPFMALTATADDATRRD 223
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L++ + + R N++ ++ E+ V ++ + + K +
Sbjct: 224 ILERLQLNNPEVYLGSFDRPNIRYNLV--------EKHKPVSQIVRYLETQKGNCGIIYC 275
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 276 GSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKP 335
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 336 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 381
>gi|418563847|ref|ZP_13128277.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21262]
gi|371969766|gb|EHO87205.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21262]
Length = 593
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/341 (38%), Positives = 194/341 (56%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+
Sbjct: 2 MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVIS 61
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I FL+SS +E + + G I+ L+V+PERF N FL
Sbjct: 62 PLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFL 121
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT
Sbjct: 122 NMLQRIK-IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQ 179
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+ L IP ++ I+ + R NL V N +R +V + H I+
Sbjct: 180 QDIREKLNIPQTDQIKTSTKRRNLIFKV-----NPTYQRQKFVLDYIKTHDEDAG--IIY 232
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L I YH+G+ K+R Q F ++++VVVAT AFGMG+D
Sbjct: 233 CSTRK-QVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 292 KSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|269104741|ref|ZP_06157437.1| aTP-dependent DNA helicase RecQ family [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268161381|gb|EEZ39878.1| aTP-dependent DNA helicase RecQ family [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 639
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 149/408 (36%), Positives = 228/408 (55%), Gaps = 18/408 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L V+G+ R GQ + I VLD S+ + PTG+GKSLCYQ+PA++LP LTLV+ PL+A
Sbjct: 6 LEKVFGFAQLRQGQDDVISRVLDGHSSAAIFPTGSGKSLCYQLPALLLPHLTLVISPLLA 65
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I + SSQ +E ++ ++ G IK+L +S ER N F F
Sbjct: 66 LMKDQVDFLQSKGIAAASIDSSQTWDESQNIMQQVRQGDIKILMISVERLKNERFRQ-FI 124
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL+V+DEAHC+SEW HNFRP Y++L + LN+ +L +TATAT + D+
Sbjct: 125 SHVPISLLVIDEAHCISEWGHNFRPDYLKLPE--YQKALNIPQVLLLTATATPAVIDDMQ 182
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH--YYILQIS 429
I N++ R NL L++ S + + S+ ++++ + Y LQ +
Sbjct: 183 LKFGIEKENIVVTGFYRPNLDLNILTSEEDEK--FSSLLNQIANDQNQGPTIIYVTLQNT 240
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ ++ L + I +YH+G+ ++ R+ IQ+ F KI +VAT+AFGMG+DK
Sbjct: 241 A-----EWLAEELERHHIHAHAYHAGMSSERRNDIQQQFMQGKIDCIVATIAFGMGIDKS 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN 549
++ VIH+ LP+S+E Y QEIGRAGRDG+ S C + + L + +Y D ++ AI
Sbjct: 296 NIRQVIHFDLPKSIENYSQEIGRAGRDGQQSTCTVIANKSGLNVLENFIYGDTPEQSAII 355
Query: 550 KFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEI 597
K L ++ + + L ++S R +K TLL LE+ I
Sbjct: 356 KVLSEIAQAEQHWEVMINRLSRDSNIRLLPLK-----TLLVYLEIRNI 398
>gi|406933324|gb|EKD68008.1| hypothetical protein ACD_48C00110G0001, partial [uncultured
bacterium]
Length = 334
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 203/340 (59%), Gaps = 12/340 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E+ + L+ +G+DSFR Q E ++ V++KK ++++PTG GKSLCYQ+PA + GLT+V
Sbjct: 4 EDAKQSLKHTFGFDSFRPMQEEIVQAVIEKKDVLVLMPTGGGKSLCYQLPATVQDGLTVV 63
Query: 247 VCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL+ALM DQ+ L I FL+SS +E + ++ G I +L+VSPE+ + +
Sbjct: 64 VSPLIALMKDQVEGLVANGIKAAFLNSSLELDEHQDIREQLERGDIDILYVSPEKLITPN 123
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F + + L +DEAHC+S+W H+FRP Y +LR L+ I+A+TATA T
Sbjct: 124 FQYSLKKWN-VQLFAIDEAHCISQWGHDFRPGYTQLRT--LKESFPDIPIIALTATADKT 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
T +D+++ L++ + + R NL L+V L R ++ + +F + KH
Sbjct: 181 TRKDILAQLKLKDPKVFISSFDRPNLALNV-LPAKKR-------IERIITFVKKRKHESG 232
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ +T+ ++ L I+ YH+G+ + +R++ Q+ F + +VVATVAFGMG
Sbjct: 233 IIYCLSRNQTEKVATALIQEGINAGYYHAGMQSHERAKAQDDFIHGRTNIVVATVAFGMG 292
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+DK +V VIH++LP++LE Y QEIGRAGRDG S LF
Sbjct: 293 IDKSNVRYVIHHNLPKNLEGYYQEIGRAGRDGLPSETLLF 332
>gi|254508582|ref|ZP_05120699.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus 16]
gi|219548524|gb|EED25532.1| ATP-dependent DNA helicase RecQ [Vibrio parahaemolyticus 16]
Length = 611
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 202/345 (58%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY +FRDGQ E I+ + + +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 19 VLEEVFGYQTFRDGQREVIESAVAGQDSLVIMPTGGGKSLCYQIPALVRSGLTLVISPLI 78
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++S+ EE+ + G K+++VSPER L DF+
Sbjct: 79 SLMKDQVDQLKANGVAAECINSTMPREELIAVYNRMNAGVTKLVYVSPERVLMRDFIERL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++ VDEAHC+S+W H+FRP Y L L+ + ++A+TATA T +D+
Sbjct: 139 QGLPL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKQAFSHVPVMALTATADDATRKDI 195
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
M L++ + + R N++ ++ E+ V +V F + + G
Sbjct: 196 MQRLQLNDPHTYLGSFDRPNIRYTLV--------EKHKPVSQVVRFLEGQRGQCGIIYCG 247
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N + SYH+G+ A +R+ +Q+ F + +++VVATVAFGMG++K +
Sbjct: 248 SRKKVEMVTEKLCNNGLRAASYHAGLDADERAYVQDAFQRDDLQIVVATVAFGMGINKPN 307
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V V+H+ +P ++E Y QE GRAGRDG + + D DI + R
Sbjct: 308 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADIGWLR 352
>gi|149179859|ref|ZP_01858364.1| ATP-dependent DNA helicase recQ [Bacillus sp. SG-1]
gi|148852051|gb|EDL66196.1| ATP-dependent DNA helicase recQ [Bacillus sp. SG-1]
Length = 707
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 196/331 (59%), Gaps = 11/331 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GY++FR GQ E I+ VL +T ++PTG GKS+CYQIPA++L G+TLVV PL++
Sbjct: 10 LKEYFGYENFRPGQDEIIQSVLFGHNTAGIMPTGGGKSICYQIPALLLEGITLVVSPLIS 69
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I F++SS E+ + ++G K+++++PER L + + +
Sbjct: 70 LMKDQVDALNQTGISATFINSSLTQAEIERRLSEAELGVYKLIYIAPER-LESPYFVQYL 128
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
I LV VDEAHC+S+W H+FRPSY++++ LL+ + +LA+TATAT D+
Sbjct: 129 RNLPIPLVAVDEAHCISQWGHDFRPSYLKIK-DLLKGLPSNPVVLALTATATPQVQNDIC 187
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
++LEI N R+NL V + G +R YV ++++ + +
Sbjct: 188 ASLEIEEENTFITGFSRENLSFKV-IKGQDRSQFALQYV-------KANQDESGIIYAAT 239
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E D + L +SV YH G+ R+ +QE F + ++V+VAT AFGMG++K +V
Sbjct: 240 RKEVDSLYNKLKKQGVSVGKYHGGMGDVQRNEMQEEFLKDNLQVIVATNAFGMGINKSNV 299
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
V+HY LP+++E Y QE GRAGRDG S C
Sbjct: 300 RYVLHYQLPKNMESYYQEAGRAGRDGGESEC 330
>gi|417656304|ref|ZP_12305991.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU028]
gi|418608462|ref|ZP_13171657.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU057]
gi|418608691|ref|ZP_13171873.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU065]
gi|418665794|ref|ZP_13227231.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU081]
gi|420201283|ref|ZP_14706908.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM018]
gi|420213629|ref|ZP_14718935.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH05005]
gi|420217323|ref|ZP_14722496.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH05001]
gi|329736755|gb|EGG73020.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU028]
gi|374401361|gb|EHQ72435.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU057]
gi|374407911|gb|EHQ78755.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU081]
gi|374409870|gb|EHQ80639.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU065]
gi|394273189|gb|EJE17624.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM018]
gi|394285205|gb|EJE29289.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH05005]
gi|394289327|gb|EJE33212.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH05001]
Length = 592
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLYVAPERFENTFFLNLLRKIE- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISQWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|119510429|ref|ZP_01629563.1| ATP-dependent DNA helicase [Nodularia spumigena CCY9414]
gi|119464958|gb|EAW45861.1| ATP-dependent DNA helicase [Nodularia spumigena CCY9414]
Length = 721
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 200/351 (56%), Gaps = 30/351 (8%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL + L+ +GYD FR GQ + I+ L+ + ++V+PTG GKSLC+Q+PA+I GLT+VV
Sbjct: 6 NLEQALKYNFGYDQFRPGQRQIIEDALENRDLLVVMPTGGGKSLCFQLPALIKSGLTVVV 65
Query: 248 CPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQ+ L I FL+SS P +V I+ G +++L+V+PER L+ F
Sbjct: 66 SPLIALMQDQVESLRNNNISATFLNSSLNPHKVRSREEAIRNGKVRLLYVAPERLLSERF 125
Query: 307 LSIFTATSL---ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
L IS +DEAHCVSEW H+FRP Y +L++ LR R +A+TATAT
Sbjct: 126 LPFLDLVHHQIGISTFAIDEAHCVSEWGHDFRPEYRQLKS--LRKRYPDVPTIALTATAT 183
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN--------ERSAYVDEVFS 415
D++ L + Q S+ L+ NRQN +SAY E+
Sbjct: 184 DRVRGDIIQQLGLK--------------QPSIHLASFNRQNLYYEVRPKTKSAYA-EILE 228
Query: 416 FHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
R + I+ + + D ++ L ++ + SYH+G+ ++RS+ Q F + +RV
Sbjct: 229 LIRETDGSTIIYCLTRK-KVDELTFKLQNDKVVALSYHAGLSDEERSKNQTRFIRDDVRV 287
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+VAT+AFGMG++K DV V+H+ LP +LE Y QE GRAGRD S C +F
Sbjct: 288 IVATIAFGMGINKPDVRLVVHFDLPRNLESYYQESGRAGRDSEPSRCTMFF 338
>gi|402830902|ref|ZP_10879596.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. CM59]
gi|402283336|gb|EJU31854.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. CM59]
Length = 729
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 214/375 (57%), Gaps = 21/375 (5%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L + L+ ++G+ +F+ Q + I+ +++ T +++PTG GKSLCYQ+PA++ G +V+
Sbjct: 7 DLQKALKSIFGFSAFKGKQEDIIRSIMEGNHTFVLMPTGGGKSLCYQLPALLKEGTAIVI 66
Query: 248 CPLVALM---IDQLRHLP---PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
PL+ALM +D +R + + H L+SS E+ + I+ G K+L+V+PE
Sbjct: 67 SPLIALMKNQVDVVRGISGTDKIAH--VLNSSLTKGEIRTVMEDIRNGDTKLLYVAPES- 123
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L D + F T IS V VDEAHC+SEW H+FRP Y ++ + R + I+A+TAT
Sbjct: 124 LTKDEYADFLRTINISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGEGIP-IIALTAT 182
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
ATT D++ L IP +N+ + + R NL V N ++ +V + R +
Sbjct: 183 ATTKVQEDILKNLGIPQANVFKSSFNRPNLYYEVRPKTKNINSDIIRFVKQ-----RPGQ 237
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I +S K E +++ L N I+ YH+G+ AK R++ Q++F ++ VVVAT+A
Sbjct: 238 SGIIYCLSRKSVEE--LAQTLQVNGITAIPYHAGLDAKTRAKHQDMFLMEEVEVVVATIA 295
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMY 539
FGMG+DK DV VIHY +P+S+E Y QE GRAGRDG YC F DI +L M
Sbjct: 296 FGMGIDKPDVRFVIHYDIPKSIESYYQETGRAGRDGGEGYCLAFYCYKDIE--KLEKFMV 353
Query: 540 SDGVDEYAINKFLCQ 554
S + E + + L Q
Sbjct: 354 SKPIAEQEVGQALLQ 368
>gi|294499016|ref|YP_003562716.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium QM B1551]
gi|294348953|gb|ADE69282.1| ATP-dependent DNA helicase RecQ [Bacillus megaterium QM B1551]
Length = 711
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 196/331 (59%), Gaps = 11/331 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR GQ E+I+ VL+ +T ++PTG GKSLCYQIP+++L G TLV+ PL++
Sbjct: 10 LQSYFGYDSFRKGQEESIRYVLEGHNTACIMPTGGGKSLCYQIPSLLLEGTTLVISPLIS 69
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I +++SS EV + + + +G K+L+V+PER + FL
Sbjct: 70 LMKDQVDTLNAAGIPATYINSSLTHTEVQQRLEEVALGEYKLLYVAPERLESPQFLEQLQ 129
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
I LV VDEAHC+S+W H+FRPSY+R+ L+ N ++ +TATAT D+
Sbjct: 130 MLP-IPLVAVDEAHCISQWGHDFRPSYLRIN-ELISKLSNAPIVMGLTATATPQVREDIC 187
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
AL I + R+NL +V + +R +Y+++ ++ + I+ + +
Sbjct: 188 RALHINEEYTVMTGFERENLSFAVV-----KGQDRISYIEQY--IRKNDQEAGIIYAATR 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+L +R L + ++V YH+G+ R Q F + ++V+VAT AFGMG+DK ++
Sbjct: 241 KDVEELHAR-LQKSGVNVSKYHAGMNGNSRDEEQNRFLQDDVQVMVATSAFGMGIDKSNI 299
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
V+HY LP+++E Y QE GRAGRDG S C
Sbjct: 300 RFVLHYQLPKNMESYYQEAGRAGRDGLPSEC 330
>gi|319891723|ref|YP_004148598.1| ATP-dependent DNA helicase RecQ [Staphylococcus pseudintermedius
HKU10-03]
gi|317161419|gb|ADV04962.1| ATP-dependent DNA helicase RecQ [Staphylococcus pseudintermedius
HKU10-03]
Length = 593
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/333 (41%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I+ VL+ T+ VLPTG GKSLCYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQKEIIERVLNHHHTLGVLPTGGGKSLCYQVPGLMFKGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS + E + G +K L+++PERF F +
Sbjct: 69 QVDQLTAMGISAAYLNSSLSTQAQKEIETQLVNGELKFLYIAPERFEQTYFEMLLRRVD- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
ISLV DEAHC+S+W H+FRPSY + +L I+A+TATATT +D+M L
Sbjct: 128 ISLVAFDEAHCISKWGHDFRPSYQAVIQRVLTMPQQF-SIVALTATATTEVQQDIMERLM 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +L++ + R NL+ V N +R +V + H S+ I+ S + +
Sbjct: 187 ISRQHLVKTSIRRRNLKFQV-----NGTYQRQKFVLDYIQKH--SQKAGIVYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L D I V YH+G+ AK R Q F ++ RVVVAT AFGMG+DK +V VI
Sbjct: 239 EALYEALEDADIPVSYYHAGMTAKQRDEAQNDFLYDRTRVVVATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L D
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLDSDCILLYSD 331
>gi|224012729|ref|XP_002295017.1| hypothetical protein THAPSDRAFT_264792 [Thalassiosira pseudonana
CCMP1335]
gi|220969456|gb|EED87797.1| hypothetical protein THAPSDRAFT_264792 [Thalassiosira pseudonana
CCMP1335]
Length = 332
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/337 (40%), Positives = 191/337 (56%), Gaps = 23/337 (6%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQ 257
GY FR+GQ AI+ + + T+LV PTG GKSLCY +PA ++ G+ LVV PL++LM DQ
Sbjct: 1 GYTDFREGQEWAIRRCMSHERTLLVAPTGQGKSLCYALPAALMEGICLVVSPLISLMQDQ 60
Query: 258 LRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT---- 313
LR LPP I LS S +A + + G KVLFVSPER +A F +
Sbjct: 61 LRQLPPKIPAATLSGSMTTAHMALIVDDVLRGRYKVLFVSPERLASAAFRRLVRPKFNVE 120
Query: 314 --------SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
+SL+ VDEAHC+S+W HNFRPSY+R+R+ L + + ILA+TATA
Sbjct: 121 TRQYERQFPTVSLLCVDEAHCLSQWGHNFRPSYLRVRS--LLPLIEPKSILALTATAGPM 178
Query: 366 TLRDVMSALEIPLS--NLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
+RD+ + L IP L K L + VS + + +S VDE + S
Sbjct: 179 VVRDICNTLCIPFDGRGLNSKVSLPPFISSQVSKDSDGVRVVKSLPVDE-GCLSKGSVIV 237
Query: 424 YILQISGKHFETDLISRYLCDNSIS--VKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
Y+ + +T++++ L ++ V YH G+ + DR++ Q F K R+ VATVA
Sbjct: 238 YVW----RQKDTEIVADQLIGAGVAGGVVCYHGGMESNDRTKAQSKFLRGKARICVATVA 293
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
FG+G++K D+ VIH LP S E Y+QEIGRAGRDGR
Sbjct: 294 FGLGINKPDIEGVIHLCLPPSPEHYLQEIGRAGRDGR 330
>gi|118444315|ref|YP_878375.1| ATP-dependent DNA helicase [Clostridium novyi NT]
gi|118134771|gb|ABK61815.1| ATP-dependent DNA helicase [Clostridium novyi NT]
Length = 812
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 195/336 (58%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L YGY SFR GQ + IK VLD + ++PTG GKS+CYQIPA+++ GLT+V+ PL+
Sbjct: 8 ILEKYYGYKSFRKGQEQVIKSVLDGNDVLAIMPTGGGKSICYQIPALMMDGLTIVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + + + +++SS E E I ++ K+L+V+PER + +FLS
Sbjct: 68 SLMKDQVDSIKNMGVSCAYINSSLGIYEFNEVIENLKNNKYKILYVAPERLESYEFLSAI 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
IS V +DEAHCVS+W H+FR SY R A + + A TATA+ D+
Sbjct: 128 KDVK-ISQVAIDEAHCVSQWGHDFRVSY-RNVAKFIDGFKERPIVTAFTATASNEVRDDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
++ L + + R+NL +++ SG+ + AYV ++ ++K + +
Sbjct: 186 INLLRLKNPKVFITGFDRENLNITIIKSGS-----KKAYV---LNYIENNKEDSGIIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L S+ YH+G+ +R + QE F +++R++VAT AFGMG+DK +
Sbjct: 238 TRKEVDNIYDNLSKKGFSIGRYHAGLSDDERKQNQEDFIHDRVRIMVATNAFGMGIDKPN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+ VIHYS+P+++E Y QEIGRAGRDG S C L
Sbjct: 298 IRYVIHYSMPKNIEAYYQEIGRAGRDGEKSECILLF 333
>gi|269962279|ref|ZP_06176631.1| ATP-dependent DNA helicase RecQ [Vibrio harveyi 1DA3]
gi|269832982|gb|EEZ87089.1| ATP-dependent DNA helicase RecQ [Vibrio harveyi 1DA3]
Length = 665
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 203/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FRDGQ I ++ + ++++LPTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 72 RVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPL 131
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+++VSPER L DF+
Sbjct: 132 ISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPERVLMRDFIER 191
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L S++ VDEAHC+S+W H+FRP Y L L+ + + +A+TATA T RD
Sbjct: 192 LENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFSHVPFMALTATADDATRRD 248
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L++ + + R N++ ++ E+ V ++ + + K +
Sbjct: 249 ILERLQLNNPEVYLGSFDRPNIRYNLV--------EKHKPVSQIVRYLETQKGNCGIIYC 300
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 301 GSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKP 360
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 361 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 406
>gi|403068682|ref|ZP_10910014.1| ATP-dependent DNA helicase [Oceanobacillus sp. Ndiop]
Length = 715
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/432 (33%), Positives = 231/432 (53%), Gaps = 36/432 (8%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GY+SFR GQ E I +L K+T+ V+PTG GKSLCYQIP + + G +++ PL
Sbjct: 7 KILQTYFGYESFRPGQQETIDHILHLKNTLAVMPTGGGKSLCYQIPGLSMDGTAIIISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I F++SS E +R + K ++V+PERF ++ F+++
Sbjct: 67 ISLMKDQVDALQALGIPATFINSSLSTSEQQSRLRDVANQRYKFVYVAPERFESSTFVNV 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L +LV DEAHC+S+W H+FRPSY + +L R N+ +A+TATAT + D
Sbjct: 127 IKRIPL-ALVAFDEAHCISQWGHDFRPSYRSIVPNLKRLS-NIPVFVALTATATEEVISD 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I +N++ R+NL + + ++S+Y+ +F S + I +
Sbjct: 185 IQELLNINDTNVVNTGFERENLSFHIV-----KGKDKSSYI-RLFLEEHSDESGIIYTAT 238
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K +TD + L I+V YH+G+ ++R + Q F ++ +++AT AFGMG+DK
Sbjct: 239 RK--QTDTLHDQLSRRGIAVAKYHAGLSEEERKQAQSAFIHDEKSIMIATNAFGMGIDKS 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD----DITYFRLRSLMYSDGVDE 545
+V VIHY++P ++E Y QE GRAGRDG S C L + F + D +
Sbjct: 297 NVRYVIHYAMPMNIESYYQEAGRAGRDGEPSDCILLFSPQDVQLQKFLIEQSQMDDASKQ 356
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLV---------KESASR---------KFDIKEEVMLT 587
K Q N ++HG L + + K + R K DI EE +
Sbjct: 357 NEYRKL--QAIINYCHTHGCLTAFILDYFDDTVTKTTCGRCSNCVERQEKIDITEEAQM- 413
Query: 588 LLTCLELGEIQY 599
+L+C++ + +Y
Sbjct: 414 ILSCVKRMDERY 425
>gi|27467419|ref|NP_764056.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis ATCC
12228]
gi|27314962|gb|AAO04098.1|AE016745_197 ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis ATCC
12228]
Length = 593
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 10 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 69
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 70 QVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLYVAPERFENTFFLNLLRKIE- 128
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 129 IPLIAFDEAHCISQWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 187
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 188 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 239
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 240 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 299
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 300 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|404483273|ref|ZP_11018496.1| ATP-dependent DNA helicase RecQ [Clostridiales bacterium OBRC5-5]
gi|404343546|gb|EJZ69907.1| ATP-dependent DNA helicase RecQ [Clostridiales bacterium OBRC5-5]
Length = 619
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 192/335 (57%), Gaps = 11/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GYDSFR GQ I VLD + + V+PTGAGKSLCYQ+PAM+L G+TLV+ PL++
Sbjct: 16 LKAVFGYDSFRQGQESVINAVLDGRDILAVMPTGAGKSLCYQVPAMLLSGITLVISPLIS 75
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ++ L + F++SS E+ +T + G K+++V+PER ++ F+ +
Sbjct: 76 LMQDQVKDLNEAGVDAAFINSSLSEREMHDTFKNASKGQYKIIYVAPERLMSEGFVRLAK 135
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
IS++ VDEAHC+S+W +FRPSYM + A + I A TATAT D++
Sbjct: 136 GVE-ISMITVDEAHCISQWGQDFRPSYMDI-AEFVNVLDKRPIISAFTATATQNVREDII 193
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+L + + R+NL V + + ++ + H+ I+ + +
Sbjct: 194 CSLGLSNPYFLVTGFDRENLFFQVE-----KPQSKDRFILDYLDRHKGESG--IIYCATR 246
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
D + L +ISV YH+G+ ++R ++Q+ F + +V+ T AFGMG+DK +V
Sbjct: 247 K-NVDSLYTLLKKRNISVAKYHAGMSIEERKQMQDGFVFDYTSIVIVTNAFGMGIDKSNV 305
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
VIHY++P S+E Y QE GRAGRDG S C L
Sbjct: 306 RFVIHYNMPSSMENYYQEAGRAGRDGLNSECILLF 340
>gi|386319939|ref|YP_006016102.1| ATP-dependent DNA helicase RecQ [Staphylococcus pseudintermedius
ED99]
gi|323465110|gb|ADX77263.1| ATP-dependent DNA helicase RecQ [Staphylococcus pseudintermedius
ED99]
Length = 593
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/333 (41%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I+ VL+ T+ VLPTG GKSLCYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQKEIIERVLNHHHTLGVLPTGGGKSLCYQVPGLMFKGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS + E + G +K L+++PERF F +
Sbjct: 69 QVDQLTAMGISAAYLNSSLSTQAQKEIETQLVNGELKFLYIAPERFEQTYFEMLLRRVD- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
ISLV DEAHC+S+W H+FRPSY + +L I+A+TATATT +D+M L
Sbjct: 128 ISLVAFDEAHCISKWGHDFRPSYQAVIQRVLTMPQQF-SIVALTATATTEVQQDIMERLM 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +L++ + R NL+ V N +R +V + H S+ I+ S + +
Sbjct: 187 ISRQHLVKTSIRRRNLKFQV-----NGTYQRQKFVLDYIQKH--SQKAGIVYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L D I V YH+G+ AK R Q F ++ RVVVAT AFGMG+DK +V VI
Sbjct: 239 EALYEALEDADIPVSYYHAGMTAKQRDEAQNDFLYDRTRVVVATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L D
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLDSDCILLYSD 331
>gi|427727826|ref|YP_007074063.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7524]
gi|427363745|gb|AFY46466.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7524]
Length = 718
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 202/344 (58%), Gaps = 16/344 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL + L+ +GYD FR GQ + I+ L + ++V+PTG GKSLC+Q+PA++ GLT+VV
Sbjct: 6 NLEQALKYHFGYDQFRPGQRQIIEDALQNRDLLVVMPTGGGKSLCFQLPALMKSGLTVVV 65
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQ+ L I FL+SS P +V I G +++L+V+PER L+ F
Sbjct: 66 SPLIALMQDQVEALRNNNISATFLNSSLNPYQVRSREDAILNGKVRLLYVAPERLLSERF 125
Query: 307 LSIFTATSL---ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
L IS+ +DEAHCVSEW H+FRP Y +L++ LR R +LA+TATAT
Sbjct: 126 LPFLDLVHEKIGISIFAIDEAHCVSEWGHDFRPEYRQLKS--LRKRYPNVPMLALTATAT 183
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D++ L + ++ + R NL V R + AY E+ R ++
Sbjct: 184 DRVRADIIQQLGLKQPSIHIASFNRQNLYYEV------RAKSKQAYA-ELLELIRDTEGS 236
Query: 424 YILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
I+ ++ K E ++ L ++ I+V YH+G+P +RS+ Q F + +RV+VAT+AF
Sbjct: 237 VIIYCLTRKKVEE--LTFKLQNDKIAVLPYHAGLPDAERSQNQTRFIRDDVRVMVATIAF 294
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
GMG++K DV V+H+ +P +LE Y QE GRAGRDG S C +F
Sbjct: 295 GMGINKPDVRLVVHFDIPRNLESYYQESGRAGRDGEPSRCTIFF 338
>gi|326336566|ref|ZP_08202735.1| ATP-dependent helicase RecQ [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325691231|gb|EGD33201.1| ATP-dependent helicase RecQ [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 730
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/375 (37%), Positives = 213/375 (56%), Gaps = 21/375 (5%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L + L+ ++G+++F+ Q E I ++D T +++PTG GKSLCYQ+PA++ G +V+
Sbjct: 8 DLQKALKSIFGFNAFKGKQEEIITSIMDNHHTFVLMPTGGGKSLCYQLPALLKEGTAIVI 67
Query: 248 CPLVALM---IDQLRHLP---PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
PL+ALM +D +R + + H L+SS E+ + I+ G K+L+V+PE
Sbjct: 68 SPLIALMKNQVDVVRGISGTDKIAH--VLNSSLTKGEIRTVMEDIRNGETKLLYVAPES- 124
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L D + F T IS V VDEAHC+SEW H+FRP Y ++A + R N+ I+A+TAT
Sbjct: 125 LTKDEYADFLKTINISFVAVDEAHCISEWGHDFRPEYRNIKAIIDRLGNNI-PIIALTAT 183
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
ATT D++ L IP + + + + R NL V N ++ +V + +
Sbjct: 184 ATTKVQEDILKNLGIPEALVFKSSFNRPNLYYEVRPKTKNINSDIIRFVKQ-----HPGQ 238
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I +S K E +++ L N I+ YH+G+ AK R++ Q++F ++ VVVAT+A
Sbjct: 239 SGIIYCLSRKSVEE--LAQTLQVNGITAIPYHAGLDAKTRAKHQDMFLMEEVEVVVATIA 296
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMY 539
FGMG+DK DV VIHY +P+S+E Y QE GRAGRDG YC F DI +L M
Sbjct: 297 FGMGIDKPDVRFVIHYDIPKSIESYYQETGRAGRDGGEGYCLAFYCYKDIE--KLEKFMV 354
Query: 540 SDGVDEYAINKFLCQ 554
+ E + + L Q
Sbjct: 355 GKPIAEQEVGQALLQ 369
>gi|91793138|ref|YP_562789.1| ATP-dependent DNA helicase RecQ [Shewanella denitrificans OS217]
gi|91715140|gb|ABE55066.1| ATP-dependent DNA helicase, RecQ family [Shewanella denitrificans
OS217]
Length = 646
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 192/331 (58%), Gaps = 11/331 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+D+FRDGQ + I +L S + + PTG+GKSLCYQ A+ LP +TLV+ PL+A
Sbjct: 10 LKAQFGFDAFRDGQQQVIDSILSNNSALAIFPTGSGKSLCYQFCALQLPHVTLVISPLLA 69
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQL L I + SS + ++ I+ G IK+L VS ERF N F
Sbjct: 70 LMKDQLAFLHGKGIAAASIDSSLTAAGSRQVMQDIRQGKIKILMVSVERFNNERFRHFLQ 129
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL+VVDEAHC+SEW HNFRP Y+++ ++ +L +TATAT +D+
Sbjct: 130 GIE-ISLLVVDEAHCISEWGHNFRPDYLKIPQYC--QDFAIDKVLLLTATATRKVKQDMT 186
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
I ++++Q RDNL L+V ++N + V ++ + Y LQ +
Sbjct: 187 ERFAIAETHIVQTGFYRDNLALTVLSIPQAQKN--TELVKQLQGLAGAGIVYVTLQHTA- 243
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
D I+ +L + K+YH+G+ + R ++Q+ F S + ++VAT+AFGMG+DK D+
Sbjct: 244 ----DDIAYFLQRQGFNAKAYHAGMDQEVRQQVQQDFMSGLVNIIVATIAFGMGIDKGDI 299
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
VIHY LP+S+E Y QEIGRAGRD S C
Sbjct: 300 RFVIHYDLPKSIENYSQEIGRAGRDNLPSQC 330
>gi|425056003|ref|ZP_18459465.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 505]
gi|403032724|gb|EJY44270.1| ATP-dependent DNA helicase RecQ [Enterococcus faecium 505]
Length = 614
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GY+ FR GQ E I+ V+D+++ + ++ TG+GKS+CYQ+P+++L GLT+VV PL+
Sbjct: 28 LLKQYFGYNEFRPGQKEIIQKVIDQENVLGIMSTGSGKSICYQLPSLLLDGLTVVVSPLI 87
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A + I ++L+++PERF+ DF+
Sbjct: 88 SLMKDQVDAANQLGIPATFINSSLDGYETARRFQEIDRQQYRLLYIAPERFIMPDFIQAM 147
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++ +DEAHC+S+W H+FRPSY+++ A+ L N I+A+TATAT D+
Sbjct: 148 NRWN-VCMIAIDEAHCISQWGHDFRPSYLQM-ANQLDQLANRPVIVALTATATIQVAADI 205
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP N IQ R+NL+ V + ++ Y+ E +++ + +
Sbjct: 206 KRLLKIPDGNHIQTGFERENLRFQVV-----KDQKKEQYLVEYLKINKNQSG---IIYAA 257
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L S+ YH G+ +R+ +QE F ++++++VAT AFGMG++K +
Sbjct: 258 TRKEVDRIYHLLKKFGFSIGRYHGGLNENERTAMQEAFLYDRLQLIVATNAFGMGINKSN 317
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY +P SLE Y QE GRAGRDG
Sbjct: 318 VRFVIHYQIPGSLEAYYQEAGRAGRDG 344
>gi|334133782|ref|ZP_08507325.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. HGF7]
gi|333608715|gb|EGL20004.1| ATP-dependent DNA helicase RecQ [Paenibacillus sp. HGF7]
Length = 599
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/336 (40%), Positives = 202/336 (60%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ YGY FR+GQ I +L+ + T+ ++PTG GKS+CYQIPA+++ G+TLVV PL+
Sbjct: 8 LLQQYYGYPEFREGQKHIISALLEGRDTLGIMPTGGGKSICYQIPALMMEGVTLVVSPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L V I FL+S+ E IR G K+L+++PER L +D+ +
Sbjct: 68 SLMKDQVDALHTVGIPATFLNSTLEAGEAGRRIREAMQGKYKLLYIAPER-LESDWFRQW 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ IS V +DEAHCVS+W H+FRPSY+ + A ++ + + A TATATT +D+
Sbjct: 127 MHSMNISFVAIDEAHCVSQWGHDFRPSYVNI-APFVQDLPSRPLVAAFTATATTEVTQDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LE+ ++ R NL+LSV L G N++ D VF + ++ H + +
Sbjct: 186 ARLLELDDPEVVVTGFGRSNLELSV-LRGVNKR-------DFVFDYAKAHTHQPGIVYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + L ++ YH+G+ ++R+R QE F + +RV+VAT AFGMG+DK +
Sbjct: 238 TRKEVDELYEQLRRKGLAAGHYHAGLSDEERARNQEAFLYDDVRVMVATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHY++P+++E Y QE GRAGRDG S C L
Sbjct: 298 VRYVIHYNMPKNMEAYYQEAGRAGRDGDPSECMLLF 333
>gi|451820169|ref|YP_007456370.1| putative ATP-dependent DNA helicase RecQ [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451786148|gb|AGF57116.1| putative ATP-dependent DNA helicase RecQ [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 818
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 197/335 (58%), Gaps = 11/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L YGY +FR GQ + I +++ + + ++PTG GKS+CYQIPA+IL G+T+V+ PL++
Sbjct: 11 LEKYYGYKTFRKGQEDIINKIINGEDVLAIMPTGGGKSICYQIPALILEGITVVISPLIS 70
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + I+G ++S+ E + I +Q G IK+L+++PER + +FL++ +
Sbjct: 71 LMKDQVDTLKDMGINGALINSTLSSVEENQVIEQLQDGEIKILYIAPERLESFEFLNVIS 130
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
IS + VDEAHC+S+W H+FR SY ++ + + N + A TATA+ D++
Sbjct: 131 KCC-ISQIAVDEAHCISQWGHDFRSSYRKI-SDFINLLQNRPIVTAFTATASEEVREDII 188
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+ L++ + R+NL ++V +GN ++ +F + ++K + +
Sbjct: 189 NLLKLKNPKVFITGFDRENLLINVVKNGNKKEY--------LFKYIENNKEVSGIIYAAT 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E DL+ L V YH+G+ R QE F ++ ++VAT AFGMG+DK ++
Sbjct: 241 RKEVDLVYEMLNAKGYKVAHYHAGLSENTRKENQENFIYDQANIMVATNAFGMGIDKPNI 300
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V+HY++P+++E Y QEIGRAGRDG S C L
Sbjct: 301 RYVVHYNMPKNIESYYQEIGRAGRDGGESECILLF 335
>gi|260770707|ref|ZP_05879637.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii CIP 102972]
gi|260614288|gb|EEX39477.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii CIP 102972]
Length = 611
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 206/354 (58%), Gaps = 14/354 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR V+GY +FRDGQ E I+ + + ++++PTG GKSLCYQIPA+ G+T+V+ PL+
Sbjct: 19 ILRDVFGYQTFRDGQQEVIESAVAGRDALVIMPTGGGKSLCYQIPALAREGVTVVISPLI 78
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++S+Q E + + G +K+L+VSPER L +F+
Sbjct: 79 SLMKDQVDQLKANGVAAECVNSTQSREALMGIYNRMHSGQLKLLYVSPERVLTGEFIERL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L +++ VDEAHC+S+W H+FRP Y L L+ + I+A+TATA T D+
Sbjct: 139 HNLPL-AMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFPQVPIMALTATADDATRSDI 195
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L + ++ + R N++ ++ E+ V +V + + K + + G
Sbjct: 196 LSRLNLTDPHVYLGSFDRPNIRYTLM--------EKHKPVSQVIRYLDTQKGHCGIIYCG 247
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 248 SRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPN 307
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRSLMYSDG 542
V V+H+ +P ++E Y QE GRAGRDG + + D DI + R SDG
Sbjct: 308 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAVMLYDPADIAWLRRMLDEKSDG 361
>gi|379727252|ref|YP_005319437.1| ATP-dependent DNA helicase RecQ [Melissococcus plutonius DAT561]
gi|376318155|dbj|BAL61942.1| ATP-dependent DNA helicase RecQ [Melissococcus plutonius DAT561]
Length = 590
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 222/394 (56%), Gaps = 27/394 (6%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+LL+ V+GY+ FR GQ E I VL++++ + ++PTG GKS+CYQ+PA++LP LTLV+ PL
Sbjct: 6 QLLKKVFGYEQFRPGQQELINCVLNRQNVLGIMPTGGGKSICYQLPALMLPNLTLVISPL 65
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I F++S+ +E+ I+L +K+L+++PER + DF +
Sbjct: 66 ISLMKDQVDALNLLGIPATFINSTISIQEMNHRIQLAVDKKVKLLYIAPERLESYDFQQL 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
I ++ VDEAHC+S+W ++FRPSY+R+ A ++ I+A+TATAT D
Sbjct: 126 LLHVP-IDVLAVDEAHCISQWGYDFRPSYLRV-AEIIHQFKQQPTIIALTATATPQVAED 183
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L IP+ N ++ LR+NL V R R ++ E +++ I+ ++
Sbjct: 184 ILKKLYIPIDNQVKTGFLRENLSFQVI-----RDQNRDLFLLEYLKLNQAQAG--IIYVN 236
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ E + I L I+V YH G+ ++R+ QE F ++++V+VAT AFGMG++K
Sbjct: 237 TRK-EAERIYLLLKSKKIAVGIYHGGMSEQERNDNQEKFLFDQLQVIVATNAFGMGINKS 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDG------------RLSYCHLFLDDITY---FRL 534
+V VIH P ++E Y QE GRAGRDG L H F++ +T ++
Sbjct: 296 NVRFVIHAQTPGNIESYYQEAGRAGRDGLPGDAILFYTPQDLQIHHYFIEQMTCTDDYKQ 355
Query: 535 RSLMYSDGVDEYAINKFLCQVFT-NGMNSHGKLC 567
+ + +YA + Q F N HG C
Sbjct: 356 QQYTKLKEISQYANTQVCLQQFILNYFGDHGLEC 389
>gi|226315259|ref|YP_002775155.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599]
gi|226098209|dbj|BAH46651.1| probable ATP-dependent DNA helicase [Brevibacillus brevis NBRC
100599]
Length = 591
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 197/336 (58%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR +GY+SFR+GQ + I +L T+ ++PTG GKS+CYQ+PAM+ G+T+V+ PL+
Sbjct: 8 ILRKYFGYESFREGQKKIITSLLAGHDTVGIMPTGGGKSICYQVPAMLQDGVTIVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I ++SS EV + +R+ G K+L+++PER + F ++
Sbjct: 68 SLMKDQVDVLVSMGIPATQINSSLDYSEVRDRLRMAARGEYKLLYIAPERLESEAFQNLI 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
IS V VDEAHCVS+W H+FRPSY+ + A L++ + A+TATAT D+
Sbjct: 128 QDVP-ISFVAVDEAHCVSQWGHDFRPSYLAI-ARFLQSLPQRPLVAALTATATPEVTEDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
LE+ L RDNL LSV G NR+ AY+ R++K + +
Sbjct: 186 KRQLELQDERLFITGFGRDNLILSVR-KGENRREFIQAYL-------RANKQQAGIIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +V YH+G+ ++R+ QE F + +R ++AT AFGMG+DK +
Sbjct: 238 TRKDVDALHADLDKRGFAVTKYHAGLTEEERAANQEAFLYDDVRTMIATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHY++P++LE Y QE GRAGRDG S C L
Sbjct: 298 VRYVIHYNMPKNLEAYYQEAGRAGRDGEPSECILLF 333
>gi|417819060|ref|ZP_12465679.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE39]
gi|423944442|ref|ZP_17733123.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-40]
gi|423973888|ref|ZP_17736668.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-46]
gi|340042950|gb|EGR03911.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE39]
gi|408662447|gb|EKL33390.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-40]
gi|408666471|gb|EKL37258.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-46]
Length = 611
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 202/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 18 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 138 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + +
Sbjct: 195 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQHGQCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 352
>gi|422908717|ref|ZP_16943388.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-09]
gi|341638676|gb|EGS63315.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-09]
Length = 611
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 202/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 18 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 138 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + +
Sbjct: 195 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQHGQCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 352
>gi|419827881|ref|ZP_14351373.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-1A2]
gi|419831541|ref|ZP_14355010.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-61A2]
gi|422915915|ref|ZP_16950269.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-02A1]
gi|423810983|ref|ZP_17714862.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-55C2]
gi|423846250|ref|ZP_17718634.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-59A1]
gi|423878417|ref|ZP_17722265.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-60A1]
gi|423996324|ref|ZP_17739601.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-02C1]
gi|424015029|ref|ZP_17754887.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-55B2]
gi|424018140|ref|ZP_17757952.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-59B1]
gi|424623518|ref|ZP_18062004.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-50A1]
gi|424628094|ref|ZP_18066413.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-51A1]
gi|424632040|ref|ZP_18070170.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-52A1]
gi|424635129|ref|ZP_18073161.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-55A1]
gi|424638950|ref|ZP_18076857.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-56A1]
gi|424647207|ref|ZP_18084895.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-57A1]
gi|443526077|ref|ZP_21092179.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-78A1]
gi|341641612|gb|EGS66137.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-02A1]
gi|408017262|gb|EKG54777.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-50A1]
gi|408022773|gb|EKG59966.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-52A1]
gi|408028170|gb|EKG65081.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-56A1]
gi|408028453|gb|EKG65344.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-55A1]
gi|408038274|gb|EKG74625.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-57A1]
gi|408059843|gb|EKG94584.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-51A1]
gi|408624245|gb|EKK97194.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-1A2]
gi|408637259|gb|EKL09328.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-55C2]
gi|408644873|gb|EKL16546.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-60A1]
gi|408646151|gb|EKL17772.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-59A1]
gi|408652428|gb|EKL23643.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-61A2]
gi|408855314|gb|EKL95021.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-02C1]
gi|408862584|gb|EKM02091.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-55B2]
gi|408871261|gb|EKM10504.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-59B1]
gi|443455544|gb|ELT19309.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-78A1]
Length = 611
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 202/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 18 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 138 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + +
Sbjct: 195 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQHGQCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 352
>gi|193214571|ref|YP_001995770.1| RecQ familyATP-dependent DNA helicase [Chloroherpeton thalassium
ATCC 35110]
gi|193088048|gb|ACF13323.1| ATP-dependent DNA helicase, RecQ family [Chloroherpeton thalassium
ATCC 35110]
Length = 594
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 162/433 (37%), Positives = 234/433 (54%), Gaps = 19/433 (4%)
Query: 183 EASDENL-GR---LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238
E SDE L G+ +L+ +GY FR+GQ I +L + +++V+PTG GKSLCYQIPA+
Sbjct: 11 EKSDELLLGKAEAILQKTFGYPHFREGQDRVILSLLKGQDSLVVMPTGQGKSLCYQIPAL 70
Query: 239 ILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPE-EVAETIRLIQVGAIKVLFVS 297
+ GLTLVV PL+ALM DQ L + +SQ P+ E+ I +K+LF++
Sbjct: 71 MQEGLTLVVSPLIALMKDQTDSLRARNYPARALNSQTPQAEIQAIFSGIYQNRLKLLFIA 130
Query: 298 PERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL-LRARLNVECIL 356
PER N FLS ISLV VDEAHC+SEW ++FRPSY ++ + L L +L
Sbjct: 131 PERLQNEGFLSDMRQAK-ISLVAVDEAHCISEWGYDFRPSYQQIASQLKLIYPKTRPVML 189
Query: 357 AMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF 416
A+TATAT L+D+ +L + + R +L LSV N R ++V
Sbjct: 190 ALTATATEEILKDIAKSLALKNPFIYIGGFERASLSLSVFQLENKR--------EKVLQI 241
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
++ I+ + +L S +L + IS YH+G+ RSRIQ+ F N+ RV+
Sbjct: 242 LKAVPGAAIIYTMSRKLAEEL-SVFLKRSGISALCYHAGLGDAVRSRIQDDFFRNRCRVI 300
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
AT AFGMG++K DV AVIH ++PE+LE Y QE GRAGRDGR SY L R R
Sbjct: 301 CATNAFGMGINKADVRAVIHLNIPETLEAYFQEAGRAGRDGRRSYATLLYSPADIERRRY 360
Query: 537 LMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIK--EEVMLTLLTCLEL 594
L + D+ + +F + ++ +ES + + E+++L L + L
Sbjct: 361 LFENAHPDKKEVAACYEAIFQKCFKTGREVVRFEQESLCGEISKRTGEKILLYKLGTI-L 419
Query: 595 GEIQYLQLLPELK 607
G ++ Q+L LK
Sbjct: 420 GVLERHQILSHLK 432
>gi|410619883|ref|ZP_11330774.1| ATP-dependent DNA helicase RecQ [Glaciecola polaris LMG 21857]
gi|410160661|dbj|GAC34912.1| ATP-dependent DNA helicase RecQ [Glaciecola polaris LMG 21857]
Length = 623
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 200/350 (57%), Gaps = 17/350 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FRDGQ E I+ +L + ++++PTG GKSLCYQIPA++L GLT+VV PL+
Sbjct: 36 VLKTVFGYDEFRDGQQEVIEQILHGQDVLVLMPTGGGKSLCYQIPALVLGGLTIVVSPLI 95
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L + +++S+ EE+ R +Q G K+++V+PER + DF+
Sbjct: 96 ALMKDQVDALVASGVSAAYINSNLSSEEMLNVYRGMQDGRYKLIYVAPERLMQFDFMQRL 155
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + I+L VDEAHCVS W H+FR Y +L L+ + ++ +TATA TT D+
Sbjct: 156 HSLN-IALFAVDEAHCVSHWGHDFRKEYRQL--GQLKQQFPAVPVIGLTATADITTRSDI 212
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY--VDEVFSFHRSSKHYYILQI 428
+ L + + + + R N+ R N+ Y D+V + + I+
Sbjct: 213 LQQLALQEPFVFKGSFDRPNI----------RYNQLFKYKATDQVIQYVKQQDGSGIIYC 262
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + + D +S L I+ YH+G+ R +IQ F + I ++VATVAFGMG++K
Sbjct: 263 NSRK-KVDDLSMALARQGINCAGYHAGLEGPIRDKIQRDFIQDNIDIIVATVAFGMGINK 321
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
+V V+H+ LP S+E Y QE GRAGRDG + L D+ R+R +
Sbjct: 322 SNVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWI 371
>gi|420219603|ref|ZP_14724618.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH04008]
gi|394288861|gb|EJE32761.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH04008]
Length = 592
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLYVAPERFENTFFLNLLRKIE- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|417983158|ref|ZP_12623800.1| ATP-dependent DNA helicase [Lactobacillus casei 21/1]
gi|417992628|ref|ZP_12632982.1| ATP-dependent DNA helicase [Lactobacillus casei CRF28]
gi|417995879|ref|ZP_12636166.1| ATP-dependent DNA helicase [Lactobacillus casei M36]
gi|418013471|ref|ZP_12653115.1| ATP-dependent DNA helicase [Lactobacillus casei Lpc-37]
gi|410528939|gb|EKQ03777.1| ATP-dependent DNA helicase [Lactobacillus casei 21/1]
gi|410532995|gb|EKQ07686.1| ATP-dependent DNA helicase [Lactobacillus casei CRF28]
gi|410536583|gb|EKQ11176.1| ATP-dependent DNA helicase [Lactobacillus casei M36]
gi|410555997|gb|EKQ29928.1| ATP-dependent DNA helicase [Lactobacillus casei Lpc-37]
Length = 592
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI VL +ST++V+PTG GKSLCYQIPAM+L GLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ +E+A+ + + G IK+L+V+PERF + D+
Sbjct: 69 ALMKDQVDALNDNGIPAAFINSTLDYQEIADRLDQARSGQIKLLYVAPERF-DTDWFVQR 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGSTDISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I R NL V R + Y+ + + I+ S
Sbjct: 187 CQRLAIPADGMINTGFERSNLSFKVV-----RDQDEDRYLLDYLKLNVDQAG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D + +L + V YH+G+ R+ QE F ++ +++AT AFGMG+DK +
Sbjct: 240 RK-EVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ +E Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDVESYYQEAGRAGRDG 325
>gi|395241603|ref|ZP_10418610.1| ATP-dependent helicase RecQ [Lactobacillus pasteurii CRBIP 24.76]
gi|394480959|emb|CCI84850.1| ATP-dependent helicase RecQ [Lactobacillus pasteurii CRBIP 24.76]
Length = 593
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 206/368 (55%), Gaps = 23/368 (6%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GY +FR GQ E IK VL+ ++ + V+PTGAGKS+CYQ+PA+I G+TLV+ PL+
Sbjct: 7 VLKETFGYTNFRPGQEEVIKKVLNGENVLAVMPTGAGKSICYQVPALINEGVTLVISPLI 66
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I L+S+ +EV +R G IK+L+++PER L D+
Sbjct: 67 SLMKDQIDSLHQNGIEAAALNSTTPQKEVNPILRQAYEGKIKLLYLTPER-LAMDYFRYQ 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATTTTLR 368
ISLV VDEAHC+S+W H+FRP+Y ++ + LR R N ILA+TATAT
Sbjct: 126 LNFLDISLVAVDEAHCISQWGHDFRPAYRQILEGINSLRQRPN---ILALTATATPNVQA 182
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+ L+IP N + + R NL + S N Y+ + H+
Sbjct: 183 DIAKQLDIPQQNFVITSFARPNLSFQLVNSPKNT----DMYIYNYINAHQEEPGIIYTNT 238
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
K + ++ +LC I SYH G+ K+RSR+Q+ F ++ +V+VAT AFGMG+DK
Sbjct: 239 RKK---VEALTDFLCKKGIKAVSYHGGMNNKERSRVQDDFQFDRTQVIVATNAFGMGIDK 295
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL-----DDITYFRLRSLMYSDGV 543
+V V+H + ++E Y QE GRAGRDG S C + D TY + S+
Sbjct: 296 SNVRFVVHANSSSNIESYYQEAGRAGRDG--SACEAVMLYHPGDSATYRWF--IDQSEAE 351
Query: 544 DEYAINKF 551
DEY ++
Sbjct: 352 DEYKKTQY 359
>gi|420172048|ref|ZP_14678563.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM067]
gi|394243519|gb|EJD88881.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM067]
Length = 592
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLYVAPERFENTFFLNLLRKIE- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|392399436|ref|YP_006436037.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
gi|390530514|gb|AFM06244.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
Length = 729
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 199/341 (58%), Gaps = 16/341 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL + L+ V+GY+ FR Q I+ +LD K+T +++PTGAGKSLCYQ+PA++ G +V+
Sbjct: 7 NLKKTLKEVFGYNQFRGNQETIIQNLLDGKNTFVIMPTGAGKSLCYQLPAIVREGTAIVI 66
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM +Q+ L V I+ FL+S+ E + + + G K+L+V+PE +
Sbjct: 67 SPLIALMKNQVDQLNAVGINASFLNSTLSKSESNKVKKSVLAGNTKLLYVAPESLTKPEN 126
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
L F A + +S + +DEAHC+SEW H+FRP Y R+R + L I+A+TATAT
Sbjct: 127 LD-FLAKANLSFIAIDEAHCISEWGHDFRPEYRRIR--FIVDSLGDLPIIALTATATPKV 183
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY--Y 424
+D+ L + +N+ + + R NL V N ++ ++ + + K
Sbjct: 184 QQDIQKNLHMEDANVFKTSFNRQNLYYEVRPKTNVKK--------QLIKYLKGKKGQSGI 235
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I +S K E I +L N I + YH+G+ + R + Q+ F + ++ ++VAT+AFGM
Sbjct: 236 IYCLSRKKVEE--IHEFLKVNDIKSRPYHAGLDSSIRMQNQDAFLNEEVDIIVATIAFGM 293
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
G+DK DV VIHY P+SLE Y QE GRAGRDG + C +F
Sbjct: 294 GIDKPDVRCVIHYDAPKSLEGYYQETGRAGRDGLNADCIMF 334
>gi|395008903|ref|ZP_10392499.1| ATP-dependent DNA helicase, RecQ family [Acidovorax sp. CF316]
gi|394313125|gb|EJE50206.1| ATP-dependent DNA helicase, RecQ family [Acidovorax sp. CF316]
Length = 586
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/345 (37%), Positives = 206/345 (59%), Gaps = 14/345 (4%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
AS + + + LR V+G R GQL+ ++ VL T+ V+PTGAGKSLCYQ+PA++LPG
Sbjct: 24 ASPDAIQKTLRKVFGLKRLRPGQLDVVQRVLQGACTLAVMPTGAGKSLCYQLPALLLPGT 83
Query: 244 TLVVCPLVALMIDQ---LRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPER 300
T+VV PLVALM DQ LR L + ++S+ +E+A + I+ G+ +++ +PE+
Sbjct: 84 TVVVSPLVALMKDQCDALRALGVAVVQ--VNSAVGSDELAAARQAIESGSARIVLTTPEQ 141
Query: 301 FLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTA 360
+ ++ A +SL+VVDEAHC+++W H+FRP+++ + A +RA L +LA+TA
Sbjct: 142 MADPALIAAL-ARHTVSLLVVDEAHCIAQWGHDFRPAFLEI-APAVRA-LGRPTVLALTA 198
Query: 361 TATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS 420
TA +++++S I +N++Q R NLQL+V G R +R ++ + +
Sbjct: 199 TAKPAVMKEIVSQFGIAAANVVQTGAYRPNLQLAVEQLG--RAADRLPRALQLVAASQGP 256
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480
Y + +L ++ L SV YH +PA R++ Q+ F ++RV+VAT
Sbjct: 257 AIVYTATVKNAQ---ELHAK-LAAAGESVGLYHGRLPAAQRTQAQDDFMDGRVRVMVATN 312
Query: 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
AFG+G+DK D+ V+HY +P S++ Y QE GRAGRDG S C L
Sbjct: 313 AFGLGIDKPDIRFVLHYQMPASVDAYYQEAGRAGRDGNDSQCTLL 357
>gi|57866319|ref|YP_187978.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis RP62A]
gi|282875700|ref|ZP_06284571.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis SK135]
gi|417658306|ref|ZP_12307940.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU045]
gi|417910245|ref|ZP_12553972.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU037]
gi|417911763|ref|ZP_12555463.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU105]
gi|417914149|ref|ZP_12557802.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU109]
gi|418604489|ref|ZP_13167837.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU041]
gi|418611171|ref|ZP_13174266.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU117]
gi|418618367|ref|ZP_13181240.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU120]
gi|418625670|ref|ZP_13188312.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU126]
gi|418629660|ref|ZP_13192156.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU127]
gi|419768193|ref|ZP_14294325.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-250]
gi|419771157|ref|ZP_14297217.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-K]
gi|420171451|ref|ZP_14677993.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM070]
gi|420182443|ref|ZP_14688579.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM049]
gi|420187962|ref|ZP_14693977.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM039]
gi|420195480|ref|ZP_14701272.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM021]
gi|420197736|ref|ZP_14703457.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM020]
gi|420206850|ref|ZP_14712355.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM008]
gi|420208258|ref|ZP_14713728.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM003]
gi|420225298|ref|ZP_14730132.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH06004]
gi|420226627|ref|ZP_14731406.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH05003]
gi|420228947|ref|ZP_14733658.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH04003]
gi|420231304|ref|ZP_14735956.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH051668]
gi|420233945|ref|ZP_14738519.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH051475]
gi|421607682|ref|ZP_16048920.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
AU12-03]
gi|57636977|gb|AAW53765.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis RP62A]
gi|281295727|gb|EFA88250.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis SK135]
gi|329737933|gb|EGG74157.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU045]
gi|341651082|gb|EGS74889.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU037]
gi|341652274|gb|EGS76063.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU105]
gi|341653233|gb|EGS77004.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU109]
gi|374404802|gb|EHQ75767.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU041]
gi|374816090|gb|EHR80305.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU120]
gi|374824066|gb|EHR88048.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU117]
gi|374833191|gb|EHR96886.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU127]
gi|374835187|gb|EHR98810.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU126]
gi|383360404|gb|EID37800.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-250]
gi|383362128|gb|EID39485.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-K]
gi|394238097|gb|EJD83581.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM070]
gi|394249988|gb|EJD95190.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM049]
gi|394255604|gb|EJE00553.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM039]
gi|394263275|gb|EJE08014.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM021]
gi|394265322|gb|EJE09979.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM020]
gi|394276953|gb|EJE21286.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM008]
gi|394282132|gb|EJE26344.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM003]
gi|394293853|gb|EJE37555.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH06004]
gi|394298243|gb|EJE41820.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH05003]
gi|394299630|gb|EJE43165.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH04003]
gi|394302870|gb|EJE46304.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH051668]
gi|394304638|gb|EJE48034.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH051475]
gi|406656733|gb|EKC83134.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
AU12-03]
Length = 592
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLYVAPERFENTFFLNLLRKIE- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|348028901|ref|YP_004871587.1| ATP-dependent DNA helicase recQ [Glaciecola nitratireducens FR1064]
gi|347946244|gb|AEP29594.1| ATP-dependent DNA helicase recQ [Glaciecola nitratireducens FR1064]
Length = 734
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 198/341 (58%), Gaps = 12/341 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
EN +L+ V+G+DSFR Q I+ VL+ +T+ ++PTG GKSLCYQIPA++ GLT+V
Sbjct: 11 ENAQAILKDVFGFDSFRSTQQGIIESVLEHNNTLAIMPTGGGKSLCYQIPAIVFDGLTVV 70
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL++LM DQ+R L + I G L+SS +E + ++ G IK+LF++PE L +
Sbjct: 71 ISPLISLMQDQVRQLVELDISAGVLNSSLSSDEYQNNLVSLKNGEIKLLFLAPETALQPN 130
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
LS+ + ++ + +DEAHC+SEW H FRP Y +L L +R +A+TATAT
Sbjct: 131 ILSLLQSIH-VACIAIDEAHCISEWGHEFRPEYRQLDQ--LVSRFPDAVTVALTATATPR 187
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D+ L I + + R NL L V+ + SAY + +K I
Sbjct: 188 VREDIKRQLNISNESEFIASFDRPNLYLEVA-------PKESAYAQTKTFIDKHAKQSGI 240
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ + DL ++ L + SV YH+G+ + R+ QE F + + ++VAT+AFGMG
Sbjct: 241 IYCQSRSGVDDLTTK-LKQDGYSVLPYHAGLNNQKRASNQEKFVRDDVDIIVATIAFGMG 299
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++K DV V+HY LP+++E Y Q+IGRAGRDG + C L
Sbjct: 300 INKPDVRYVVHYDLPKNIESYYQQIGRAGRDGDDADCLLLF 340
>gi|256848526|ref|ZP_05553967.1| ATP-dependent DNA helicase RecQ [Lactobacillus coleohominis
101-4-CHN]
gi|256714578|gb|EEU29558.1| ATP-dependent DNA helicase RecQ [Lactobacillus coleohominis
101-4-CHN]
Length = 593
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 140/364 (38%), Positives = 212/364 (58%), Gaps = 17/364 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N +L+ V+G+D FR GQ E I VL ++T+ V+PTG GKSLCYQIPA++ PG+T+VV
Sbjct: 3 NAQSVLKTVFGFDEFRPGQREVISAVLSGRNTLAVMPTGGGKSLCYQIPALLNPGVTIVV 62
Query: 248 CPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I ++S+ +EV +R G +K+++V+PER LN D+
Sbjct: 63 SPLISLMKDQVDALHQNGIEAAAINSTTPRDEVNPILRQAYEGKLKLIYVTPER-LNMDY 121
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
I+LV VDEAHC+S+W H+FRP+Y +LR ++ L++R LA+TATAT
Sbjct: 122 FRYQLNYLNINLVAVDEAHCISQWGHDFRPAYRQLRTAIAGLKSR---PVTLALTATATP 178
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
+D+ L I ++ I R N+ V Q++ Y+ E H+
Sbjct: 179 RVQQDIGQQLAIEPNDFIVTNFTRPNISFKVVQP----QSDTKRYIAEYLKNHQDEAG-I 233
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I + K E ++ YL D +V+ YH+G+ + R+RIQ+ F ++I V+VAT AFGM
Sbjct: 234 IYANTRKGVEA--LAEYLNDRGFNVEPYHAGMDNQTRARIQDDFQFDRIPVIVATNAFGM 291
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDG 542
G+DK +V V+H + +++E Y QE GRAGRDG S + D+ +R R + S+
Sbjct: 292 GIDKSNVRFVVHAASAQNMESYYQEAGRAGRDGLPSEAVMLFHAGDMQQYR-RFIEMSEA 350
Query: 543 VDEY 546
+EY
Sbjct: 351 DEEY 354
>gi|418624576|ref|ZP_13187250.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU125]
gi|374827273|gb|EHR91137.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU125]
Length = 592
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLYVAPERFENTFFLNLLRKIE- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|70727172|ref|YP_254088.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
gi|68447898|dbj|BAE05482.1| ATP-dependent DNA helicase [Staphylococcus haemolyticus JCSC1435]
Length = 592
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GYD FR GQ E I ++D + + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 9 FGYDKFRPGQKEIITKIMDHHNVLGVLPTGGGKSICYQVPGLMLGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I FL+SS ++ E ++ G I+ L+V+PERF N FLS+ +
Sbjct: 69 QVDQLKAMGIKAAFLNSSLTKKQQKEIEDDLRKGHIQFLYVAPERFDNQYFLSLLSRID- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+M L
Sbjct: 128 IHLIAFDEAHCISKWGHDFRPSYQSVIKKVFTLPQNF-TIVALTATATAEVQQDIMEKLN 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I + ++ + R NL V N +R +V + H+ I+ S + +
Sbjct: 187 IDRRDEVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVQKHKEQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L ++S YH+G+ K+R Q F +K++VV+AT AFGMG+DK +V VI
Sbjct: 239 EELQEALDVINVSSAIYHAGLTNKEREAAQNEFVYDKVKVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLESECILLFSE 331
>gi|420176719|ref|ZP_14683126.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM057]
gi|420179931|ref|ZP_14686199.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM053]
gi|394251940|gb|EJD97001.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM053]
gi|394252285|gb|EJD97323.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM057]
Length = 592
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEERIKRGAIQFLYVAPERFENTFFLNLLRKIK- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|392553532|ref|ZP_10300669.1| ATP-dependent DNA helicase [Pseudoalteromonas spongiae
UST010723-006]
Length = 607
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 195/337 (57%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY FR GQ + I VL + ++++PTG GKSLCYQ+PA++LPG+T+VV PL+
Sbjct: 19 VLSSVFGYKQFRAGQEQVIDAVLAGQDCLVLMPTGGGKSLCYQVPALLLPGITIVVSPLI 78
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++++SQ EE + + G IK+L+V+PER L DF +
Sbjct: 79 SLMQDQVAQLKAQGVAAAYINNSQSREEQQLIYQGLHQGQIKILYVAPERLLTDDFSTRL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ I L +DEAHCVS W H+FRP Y RL L+ R + I+A+TATA T D+
Sbjct: 139 QHLN-IGLFAIDEAHCVSHWGHDFRPHYYRL--GQLKQRFSHIPIMALTATADIATRNDI 195
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L + +++ + R N++ ++ E+ + ++ F + K +
Sbjct: 196 VMQLGLTNAHIYTGSFDRPNIRYTIE--------EKFKPLSQLMRFLKEQKGQSGIIYCS 247
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
D I+ L D + SYH+G+ + RS +Q F + I +VVATVAFGMG++K +
Sbjct: 248 SRKRVDDIAEKLVDAGYNAASYHAGLENEQRSFVQNAFARDDIHIVVATVAFGMGINKPN 307
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
V VIHY +P+++E Y QE GRAGRDG + ++ D
Sbjct: 308 VRFVIHYDIPKNIESYYQETGRAGRDGLSAEAIMYFD 344
>gi|424664440|ref|ZP_18101476.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 616]
gi|404576022|gb|EKA80763.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 616]
Length = 601
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 200/335 (59%), Gaps = 12/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L++ +GYDSFR Q E I+ ++ K+ ++++PTG GKS+CYQ+PA+++ G +V+ PL++
Sbjct: 5 LKIYFGYDSFRPLQEEIIRNLMSKRDALVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIF 310
LM DQ+ L I G L+SS E A R G +K+L++SPE+ L+ AD+L
Sbjct: 65 LMKDQVESLCANGIPAGALNSSNDESENANLRRACISGKLKLLYISPEKLLSEADYL--- 121
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL VDEAHC+S+W H+FRP Y R+ LR + ++A+TATA T D+
Sbjct: 122 LRDMTISLFAVDEAHCISQWGHDFRPEYARM--GFLRTQFPNIPMIALTATADKITREDI 179
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL LSV G + + A VD + S Y + S
Sbjct: 180 VRQLQLKQPEIFISSFDRPNLSLSVK-RGYQPKEKSKAIVDFIARHRGESGIIYCMSRS- 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L + I YH+G+ A+ R Q+ F +++I VV AT+AFGMG+DK +
Sbjct: 238 ---KTETVAQMLQKHGIRCGVYHAGLSARQRDEAQDNFINDRIEVVCATIAFGMGIDKSN 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY+LP+S+E + QEIGRAGRDG S LF
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILF 329
>gi|417647685|ref|ZP_12297519.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU144]
gi|329723298|gb|EGG59828.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU144]
Length = 592
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 195/335 (58%), Gaps = 15/335 (4%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLYVAPERFENTFFLNLLRKIE- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRKQVE 239
Query: 436 DLISRYLCDNSISVKS--YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+L + NS +KS YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V
Sbjct: 240 EL---HAALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRY 296
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 297 VIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|149202990|ref|ZP_01879961.1| ATP-dependent DNA helicase RecQ [Roseovarius sp. TM1035]
gi|149143536|gb|EDM31572.1| ATP-dependent DNA helicase RecQ [Roseovarius sp. TM1035]
Length = 678
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/357 (38%), Positives = 201/357 (56%), Gaps = 21/357 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LLR V+G+D+FR GQ E I V +T+ ++PTG GKSLC+QIPA++ G+T+V+ PL+
Sbjct: 7 LLRDVFGFDAFRPGQEEIIHTVATGCNTLAIMPTGGGKSLCFQIPALMREGVTVVISPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+R L + G L+S EE AE + ++ G +++L+++PER L +
Sbjct: 67 ALMRDQVRALRAAGVEAGALTSGNTDEETAEVWQALEAGRLRLLYIAPERLAAGSSLGML 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L+ VDEAHCVS+W H+FRP Y+R+ LR LNV + A TATA T ++
Sbjct: 127 RRIG-VGLIAVDEAHCVSQWGHDFRPDYLRI--GELRRALNVP-LAAFTATADAETRDEI 182
Query: 371 MSAL--EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+ L P +Q R N+ ++ + N R ++ +F + K +
Sbjct: 183 VEKLFDGQPPQTFLQGFD-RPNIHMAFAAKDNPRA--------QIMAFAAARKGQSGIVY 233
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
G +T+ ++R L D S +YH G+ A+ R ++ F S +VVATVAFGMG+DK
Sbjct: 234 CGTRAKTETLARALLDAGHSACAYHGGMEAEARRIVEGRFSSEDGLIVVATVAFGMGVDK 293
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGV 543
D+ V H LP+S+E Y QEIGRAGRDG + DDI RLR +G+
Sbjct: 294 PDIRWVAHADLPKSIEGYYQEIGRAGRDGAPAETLTLFGPDDI---RLRRTQIDEGL 347
>gi|186683728|ref|YP_001866924.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
gi|186466180|gb|ACC81981.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
Length = 719
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/343 (40%), Positives = 199/343 (58%), Gaps = 14/343 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL + L+ +GYD FR GQ + I+ L + ++V+PTG GKSLC+Q+PA+I GLT+VV
Sbjct: 6 NLEQALKYHFGYDRFRPGQRQIIEDALQNRDLLIVMPTGGGKSLCFQLPALIKKGLTVVV 65
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQ+ L I+ FL+SS P +V I G +++L+V+PER L+ F
Sbjct: 66 SPLIALMQDQVEGLRNNNINATFLNSSLNPYKVRSREEAILSGKVRLLYVAPERLLSERF 125
Query: 307 LSIFTATSL---ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
L I+ +DEAHCVSEW H+FRP Y ++++ LR R LA+TATAT
Sbjct: 126 LPFLDLVKEKIGIAAFAIDEAHCVSEWGHDFRPEYRQMKS--LRKRYPDVPTLALTATAT 183
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D++ L + ++ + R NL V R +SAY E+ R ++
Sbjct: 184 DRVRADIIQQLGLKQPSIHIASFNRQNLYYEV------RSKTKSAYA-ELLELIRENEGS 236
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I+ + + D ++ L ++ IS SYH+G+ ++RS Q F + +RV+VAT+AFG
Sbjct: 237 AIIYCLTRK-KVDELTFKLQNDKISALSYHAGLSDEERSSNQTRFIRDDVRVMVATIAFG 295
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
MG++K DV VIH+ LP +LE Y QE GRAGRD S C LF
Sbjct: 296 MGINKPDVRLVIHFDLPRNLESYYQESGRAGRDSEPSRCTLFF 338
>gi|294142824|ref|YP_003558802.1| ATP-dependent DNA helicase RecQ [Shewanella violacea DSS12]
gi|293329293|dbj|BAJ04024.1| ATP-dependent DNA helicase RecQ [Shewanella violacea DSS12]
Length = 610
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 133/348 (38%), Positives = 202/348 (58%), Gaps = 15/348 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY +FR GQ E I+ + ++++PTG GKSLCYQ+PA+ +PGLT+VV PL++
Sbjct: 19 LQSVFGYRTFRKGQREVIEQICAGVDCLVIMPTGGGKSLCYQLPALQMPGLTIVVSPLIS 78
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + ++ G+L+SSQ +E A +R + G +K+L+VSPER L A F+
Sbjct: 79 LMKDQVDSLQQMGVNAGYLNSSQAGQESARILREMHSGELKLLYVSPERLLQASFIDRLH 138
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL +DEAHC+S+W H+FRP Y L LR I+A+TATA T +D+
Sbjct: 139 ELH-ISLFAIDEAHCISQWGHDFRPEYAAL--GRLRQYFPHVPIMALTATADQATRQDIC 195
Query: 372 SALEI-PLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L I P S L R N++ +V+ E+ +++ F + + G
Sbjct: 196 QRLTITPFSFLTSFD--RPNIRYTVA--------EKLNAANQLRQFVTAQNGTSGIIYCG 245
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
D ++ L + SYH+G ++R+ +Q+ F +++ +VVATVAFGMG++K +
Sbjct: 246 SRRRVDEVAERLRLQGHNADSYHAGRTQEERADVQDRFLKDQLDIVVATVAFGMGINKSN 305
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
V V+HY +P+S+E Y QE GRAGRDG S + D R+R L+
Sbjct: 306 VRYVVHYDIPKSVESYYQETGRAGRDGLDSEALMLFDPADIGRVRHLI 353
>gi|116494582|ref|YP_806316.1| superfamily II DNA helicase [Lactobacillus casei ATCC 334]
gi|116104732|gb|ABJ69874.1| ATP-dependent DNA helicase, RecQ-like protein [Lactobacillus casei
ATCC 334]
Length = 592
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI VL +ST++V+PTG GKSLCYQIPAM+L GLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ +E+A+ + + G IK+L+V+PERF + D+
Sbjct: 69 ALMKDQVDALNDNGIPAAFINSTLDYQEIADRLDQARSGQIKLLYVAPERF-DTDWFVQR 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGSTDISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I R NL V R + Y+ + + I+ S
Sbjct: 187 CQRLAIPADGMINTGFERSNLSFKVV-----RDQDEDRYLLDYLKLNVDQAG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D + +L + V YH+G+ R+ QE F ++ +++AT AFGMG+DK +
Sbjct: 240 RK-EVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ +E Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDVESYYQEAGRAGRDG 325
>gi|239631816|ref|ZP_04674847.1| ATP-dependent DNA helicase RecQ [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|239526281|gb|EEQ65282.1| ATP-dependent DNA helicase RecQ [Lactobacillus paracasei subsp.
paracasei 8700:2]
Length = 592
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI VL +ST++V+PTG GKSLCYQIPAM+L GLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ +E+A+ + + G IK+L+V+PERF + D+
Sbjct: 69 ALMKDQVDALNDNGIPAAFINSTLDYQEIADRLDQARSGRIKLLYVAPERF-DTDWFVQR 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGSTDISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I R NL V R + Y+ + + I+ S
Sbjct: 187 CQRLAIPADGMINTGFERSNLSFKVV-----RDQDEDRYLLDYLKLNVDQAG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D + +L + V YH+G+ R+ QE F ++ +++AT AFGMG+DK +
Sbjct: 240 RK-EVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ +E Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDVESYYQEAGRAGRDG 325
>gi|420199774|ref|ZP_14705445.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM031]
gi|394271524|gb|EJE16017.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM031]
Length = 592
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEERIKRGAIQFLYVAPERFENTFFLNLLRKIK- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|418633674|ref|ZP_13196080.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU129]
gi|420189584|ref|ZP_14695553.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM037]
gi|420203724|ref|ZP_14709285.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM015]
gi|374838621|gb|EHS02159.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU129]
gi|394261333|gb|EJE06132.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM037]
gi|394274306|gb|EJE18727.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM015]
Length = 592
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEERIKRGAIQFLYVAPERFENTFFLNLLRKIK- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|323494185|ref|ZP_08099300.1| ATP-dependent DNA helicase RecQ [Vibrio brasiliensis LMG 20546]
gi|323311579|gb|EGA64728.1| ATP-dependent DNA helicase RecQ [Vibrio brasiliensis LMG 20546]
Length = 612
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 200/345 (57%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY SFRDGQ E I + + +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 20 ILEDVFGYQSFRDGQQEVIDAAVAGQDSLVIMPTGGGKSLCYQIPALVRSGLTLVISPLI 79
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++S+ EE+ + G IK+++VSPER L DF+
Sbjct: 80 SLMKDQVDQLKANGVAAECINSTMPREELISVYNRMNSGVIKLVYVSPERVLMRDFIERL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++ VDEAHC+S+W H+FRP Y L L+ ++A+TATA T D+
Sbjct: 140 EGLPL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKQYFPHVPVMALTATADDATRSDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L++ + + R N++ ++ E+ + +V F + + G
Sbjct: 197 TQRLQLTEPHAYLGSFDRPNIRYTLV--------EKHKPISQVVRFLEDQRGNCGIIYCG 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N + SYH+G+ A +R+ +Q+ F + I++VVATVAFGMG++K +
Sbjct: 249 SRKKVEMVTEKLCNNGLRAASYHAGLDADERAYVQDAFQRDDIQIVVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 309 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 353
>gi|227535440|ref|ZP_03965489.1| ATP-dependent DNA helicase RecQ [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|418001700|ref|ZP_12641835.1| ATP-dependent DNA helicase [Lactobacillus casei UCD174]
gi|227186923|gb|EEI66990.1| ATP-dependent DNA helicase RecQ [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|410545961|gb|EKQ20239.1| ATP-dependent DNA helicase [Lactobacillus casei UCD174]
Length = 592
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI VL +ST++V+PTG GKSLCYQIPAM+L GLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ +E+A+ + + G IK+L+V+PERF + D+
Sbjct: 69 ALMKDQVDALNDNGIPAAFINSTLDYQEIADRLDQARSGRIKLLYVAPERF-DTDWFVQR 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGSTDISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I R NL V R + Y+ + + I+ S
Sbjct: 187 CQRLAIPADGMINTGFERSNLSFKVV-----RDQDEDRYLLDYLKLNVDQAG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D + +L + V YH+G+ R+ QE F ++ +++AT AFGMG+DK +
Sbjct: 240 RK-EVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ +E Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDVESYYQEAGRAGRDG 325
>gi|225025801|ref|ZP_03714993.1| hypothetical protein EUBHAL_00026 [Eubacterium hallii DSM 3353]
gi|224956885|gb|EEG38094.1| putative ATP-dependent DNA helicase RecQ [Eubacterium hallii DSM
3353]
Length = 667
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 192/340 (56%), Gaps = 8/340 (2%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N+ L+ +GYDS R GQ E I+ +L +K + ++PTGAGKSLCYQ+PA++L G+T+VV
Sbjct: 2 NINETLKHYFGYDSLRPGQQELIEGILQRKDVLGIMPTGAGKSLCYQVPALMLDGITIVV 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ++ L +H +++SS ++ + G K+++V+PER F
Sbjct: 62 SPLISLMTDQVKALNQAGVHAAYINSSLTENQIRTALFYAAQGRYKIIYVAPERLNTIRF 121
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
L F IS+V VDEAHC+S+W +FRPSY+ + A L + A TATAT
Sbjct: 122 LE-FACQVDISMVTVDEAHCISQWGQDFRPSYVGI-ADFLAQLPKRPVVSAFTATATERV 179
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+D+M +L + + R NL V ++ + S V ++ + + +
Sbjct: 180 KQDIMGSLRLQNPVTVVTGFDRPNLFFRVVTRKGGKETDNS-----VLNYVKKHEDESGI 234
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
D I L I YH+G+ ++R + Q+ F ++IRV+VAT AFGMG+
Sbjct: 235 IYCATKKNADKIYGLLQQYGIEAGHYHAGLSLEERKKNQDDFTYDRIRVMVATNAFGMGI 294
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
DK +V V+HY++P+SLE Y QE GRAGRDG + C LF
Sbjct: 295 DKSNVRYVLHYNMPQSLEYYYQEAGRAGRDGEEAECVLFF 334
>gi|425441134|ref|ZP_18821420.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
gi|389718248|emb|CCH97777.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
Length = 703
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 209/355 (58%), Gaps = 30/355 (8%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ ++L ++L+ +GYD FR Q + I+ L+ + ++++PTG GKSLC+Q+PA+I G+
Sbjct: 2 AAIDSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGV 61
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ ++V E LI G IK+L+V+PER L
Sbjct: 62 TVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLL 121
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL++ ++ + VDEAHCVS+W H+FRP Y +++ +R R ILA+T
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQ--VRQRFPSVPILALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN-------ERSAYVDE 412
ATAT D+ IQ+ LRD S+ ++ NR N + S +
Sbjct: 180 ATATQQVREDI-----------IQQLGLRDT---SIHIASFNRPNLYYEVQPKTSKSYQQ 225
Query: 413 VFSFHRSSKHYYILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
++ + + K I+ IS K D ++ L + I+ YH+G+ ++RS Q F +
Sbjct: 226 LYQYIKGQKGAGIVYCISRK--TVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRD 283
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++++VAT+AFGMG++K DV VIHY LP +LE Y QE GRAGRDG + C LF
Sbjct: 284 DVQIMVATIAFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFF 338
>gi|191638021|ref|YP_001987187.1| ATP-dependent DNA helicase RecQ [Lactobacillus casei BL23]
gi|385819774|ref|YP_005856161.1| ATP-dependent DNA helicase RecQ [Lactobacillus casei LC2W]
gi|385822916|ref|YP_005859258.1| ATP-dependent DNA helicase RecQ [Lactobacillus casei BD-II]
gi|409996881|ref|YP_006751282.1| ATP-dependent DNA helicase recQ [Lactobacillus casei W56]
gi|417986391|ref|ZP_12626962.1| ATP-dependent DNA helicase [Lactobacillus casei 32G]
gi|418010510|ref|ZP_12650287.1| ATP-dependent DNA helicase [Lactobacillus casei Lc-10]
gi|190712323|emb|CAQ66329.1| ATP-dependent DNA helicase RecQ [Lactobacillus casei BL23]
gi|327382101|gb|AEA53577.1| ATP-dependent DNA helicase RecQ [Lactobacillus casei LC2W]
gi|327385243|gb|AEA56717.1| ATP-dependent DNA helicase RecQ [Lactobacillus casei BD-II]
gi|406357893|emb|CCK22163.1| Probable ATP-dependent DNA helicase recQ [Lactobacillus casei W56]
gi|410526115|gb|EKQ01006.1| ATP-dependent DNA helicase [Lactobacillus casei 32G]
gi|410553999|gb|EKQ27987.1| ATP-dependent DNA helicase [Lactobacillus casei Lc-10]
Length = 592
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI VL +ST++V+PTG GKSLCYQIPAM+L GLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ +E+A+ + + G IK+L+V+PERF + D+
Sbjct: 69 ALMKDQVDALNDNGIPAAFINSTLDYQEIADRLDQARSGRIKLLYVAPERF-DTDWFVQR 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGSTDISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I R NL V R + Y+ + + I+ S
Sbjct: 187 CQRLAIPADGMINTGFERSNLSFKVV-----RDQDEDRYLLDYLKLNVDQAG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D + +L + V YH+G+ R+ QE F ++ +++AT AFGMG+DK +
Sbjct: 240 RK-EVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ +E Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDVESYYQEAGRAGRDG 325
>gi|433461248|ref|ZP_20418861.1| ATP-dependent DNA helicase RecQ [Halobacillus sp. BAB-2008]
gi|432190413|gb|ELK47446.1| ATP-dependent DNA helicase RecQ [Halobacillus sp. BAB-2008]
Length = 711
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 194/337 (57%), Gaps = 11/337 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ YGY SFR GQ E I+ VL +T+ V+PTG GKSLCYQIP + L G +++ PL
Sbjct: 6 KILQQYYGYSSFRPGQEEVIQHVLHGHNTLAVMPTGGGKSLCYQIPGLTLDGTAVIISPL 65
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + +++SS E E + I+ G ++V+PER DFL++
Sbjct: 66 ISLMKDQVDALLSYGVPATYINSSLSAREQQERMTAIRQGRYSFVYVAPERMEAPDFLNL 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
++ L SL+ DEAHC+S+W H+FRPSY R LR N+ ++A+TATAT + D
Sbjct: 126 LSSIPL-SLIAFDEAHCISQWGHDFRPSY-RSIVPTLRTIPNLPVVMALTATATKEVIED 183
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ +++P ++ R+NL V + G ++++ Y+ +V + I+ +
Sbjct: 184 IKRLIDVPEEAVVNTGFARENLSFRV-IKGRDKRDFVETYLQKV------PEDAGIIYTA 236
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ + D + YL + + YH+G+ R + Q F +K+ +VAT AFGMG+DK
Sbjct: 237 TRK-DADQLHTYLSEKGYASGKYHAGMTENQRRQTQMDFVQDKVTTMVATNAFGMGIDKS 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+V VIHYS+P ++E Y QE GRAGRDG C L
Sbjct: 296 NVRYVIHYSMPMNIESYYQEAGRAGRDGEPGDCVLLF 332
>gi|424658095|ref|ZP_18095363.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-16]
gi|408056663|gb|EKG91539.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-16]
Length = 611
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 201/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 18 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 138 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + R N++ + E+ V +V + + + +
Sbjct: 195 IMQRLQLNEPQQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMLTEKLCGNHIRAASYHAGMDTDERAWVQEAFQRDDLQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 352
>gi|218710963|ref|YP_002418584.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus LGP32]
gi|218323982|emb|CAV20344.1| RecQ [Vibrio splendidus LGP32]
Length = 612
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/352 (35%), Positives = 203/352 (57%), Gaps = 20/352 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY SFRDGQ E I + ++ K +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 20 ILQDVFGYQSFRDGQQEVIDLAVEGKDSLVIMPTGGGKSLCYQIPALVRDGLTLVISPLI 79
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++SS +++ + G +K+++ SPER L DF+
Sbjct: 80 SLMKDQVDQLKANGVAAECINSSMPRDQLLSVFNRMNSGQLKMVYASPERVLMRDFIERL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++ VDEAHC+S+W H+FRP Y L L+ +A+TATA T +D+
Sbjct: 140 QGLPL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKQYFPHVPYMALTATADDATRKDI 196
Query: 371 MSALEI--PLSNL--IQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+S L++ P ++L + +R NL E+ V +V + + K +
Sbjct: 197 ISRLQLVDPHTHLGSFDRPNIRYNLV------------EKHKPVSQVVRYLETQKGNCGI 244
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
G + ++++ LC+N I YH+G+ +R+ +QE F + I++VVATVAFGMG+
Sbjct: 245 IYCGSRKKVEMVTEKLCNNGIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMGI 304
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
+K +V V+H+ +P ++E Y QE GRAGRDG + + D LR ++
Sbjct: 305 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADMGWLRRML 356
>gi|418004798|ref|ZP_12644808.1| ATP-dependent DNA helicase [Lactobacillus casei UW1]
gi|418007720|ref|ZP_12647596.1| ATP-dependent DNA helicase [Lactobacillus casei UW4]
gi|410548272|gb|EKQ22478.1| ATP-dependent DNA helicase [Lactobacillus casei UW4]
gi|410548729|gb|EKQ22918.1| ATP-dependent DNA helicase [Lactobacillus casei UW1]
Length = 592
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI VL +ST++V+PTG GKSLCYQIPAM+L GLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ +E+A+ + + G IK+L+V+PERF + D+
Sbjct: 69 ALMKDQVDALNDNGIPAAFINSTLDYQEIADRLDQARSGRIKLLYVAPERF-DTDWFVQR 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGSTDISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I R NL V R + Y+ + + I+ S
Sbjct: 187 CQRLAIPADGMINTGFERSNLSFKVV-----RDQDEDRYLLDYLKLNVDQAG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D + +L + V YH+G+ R+ QE F ++ +++AT AFGMG+DK +
Sbjct: 240 RK-EVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ +E Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDVESYYQEAGRAGRDG 325
>gi|392546619|ref|ZP_10293756.1| ATP-dependent DNA helicase [Pseudoalteromonas rubra ATCC 29570]
Length = 604
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 131/357 (36%), Positives = 209/357 (58%), Gaps = 15/357 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY FRDGQL+ I+ LD + ++++LPTG GKSLCYQ+PA+ILPG +VV PL+
Sbjct: 15 VLKEVFGYSDFRDGQLDVIQACLDGRDSLVLLPTGGGKSLCYQVPALILPGTCVVVSPLI 74
Query: 252 ALMIDQLRHLPPV-IHGGFLSSS-QRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
+LM DQ+ L + I F+++S R ++ A RL Q G IK+L+V+PE+ L ++F+
Sbjct: 75 SLMQDQVAQLQALGISAEFINNSLDRAQQQAIYQRLHQ-GEIKLLYVAPEKILQSEFIER 133
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L L +DEAHCVS W H+FRP Y RL L+ R ++A+TATA T D
Sbjct: 134 LSHLQL-GLFAIDEAHCVSHWGHDFRPHYCRLHE--LKHRFASVPMMALTATADLATRSD 190
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+++ L + + + R N++ ++ E+ + ++ + R+ K +
Sbjct: 191 IVTQLGLQTPFIHTGSFDRPNIRYTI--------EEKFKPLSQLMRYLRTQKGQSGIVYC 242
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
D I+ L + + +YH+G+ + R +Q F + I++VVATVAFGMG++K
Sbjct: 243 SSRKRVDDIAEKLVEAGFNAAAYHAGMSNEQRQFVQNAFARDDIQIVVATVAFGMGINKS 302
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
+V V+HY +P+S+E Y QE GRAGRDG + ++ D R++ + D DE+
Sbjct: 303 NVRYVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVKRF-FEDIEDEH 358
>gi|408491728|ref|YP_006868097.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
gi|408469003|gb|AFU69347.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
Length = 728
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 145/438 (33%), Positives = 225/438 (51%), Gaps = 40/438 (9%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL + L+ +G++ F+ Q + IK ++ K T +++PTG GKSLCYQ+PA+I G +VV
Sbjct: 5 NLHQELKKYFGFNEFKGLQEQVIKSIISNKDTFVIMPTGGGKSLCYQLPALIKEGTAIVV 64
Query: 248 CPLVALM---IDQLRHLPPVIHGGF---LSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
PL+ALM +D +R++ H G L+SS +V + I G K+++V+PE
Sbjct: 65 SPLIALMKNQVDAIRNISE--HHGVAHVLNSSLNKTQVKQVKEDISSGITKLVYVAPESL 122
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
+++ + IS + +DEAHC+SEW H+FRP Y L+ + R N+ I+ +TAT
Sbjct: 123 TKTEYIEFLKGEN-ISFLAIDEAHCISEWGHDFRPEYRNLKNIIERIGENI-PIIGLTAT 180
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
AT D++ L IP S + + R NL + ++ ++ +V + S K
Sbjct: 181 ATPKVQEDILKNLRIPNSKTFKDSFNRPNLYYEIRPKTDDVDSDIIKFVKK-----NSGK 235
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I +S K E +S+ L N + YH+G+ AK RSR Q++F I VVVAT+A
Sbjct: 236 SGIIYCLSRKRVEQ--LSQALQVNGVKAVPYHAGLDAKSRSRHQDMFLMEDIDVVVATIA 293
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541
FGMG+DK DV V+H +P+S+E Y QE GRAGRDG +C + + +L M
Sbjct: 294 FGMGIDKPDVRFVVHNDIPKSIESYYQETGRAGRDGGEGHCVAYYNHKDIEKLEKFMSGK 353
Query: 542 GVDEYAINKFLCQ----------------------VFTNGMNSHGKLCSLVKESASRKFD 579
+ E I L Q F N G + ++ +K +
Sbjct: 354 PIAEQEIGHALLQDVVAFAESSISRRKYILHYFGEEFDNETGDGGDMDDNIRYPKKKK-E 412
Query: 580 IKEEVMLTLLTCLELGEI 597
K++V L L T +E G++
Sbjct: 413 AKDDVDLILKTVIETGQL 430
>gi|410658874|ref|YP_006911245.1| ATP-dependent DNA helicase RecQ [Dehalobacter sp. DCA]
gi|410661860|ref|YP_006914231.1| ATP-dependent DNA helicase RecQ [Dehalobacter sp. CF]
gi|409021229|gb|AFV03260.1| ATP-dependent DNA helicase RecQ [Dehalobacter sp. DCA]
gi|409024216|gb|AFV06246.1| ATP-dependent DNA helicase RecQ [Dehalobacter sp. CF]
Length = 596
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 196/331 (59%), Gaps = 11/331 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY FR+GQ + I+ +L ++ T+ ++PTGAGKS+ YQIPA++ G+TLV+ PL++LM D
Sbjct: 13 FGYREFREGQEQVIESLLQRQDTLAIMPTGAGKSIAYQIPAVLFEGVTLVISPLISLMKD 72
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I F++SS P+E I +Q G K+++++PER + +FL+
Sbjct: 73 QVDSLRQTGIPATFINSSISPKETWSRIDRMQRGEYKLVYLAPERLESEEFLARLNGLP- 131
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I V VDEAHCVS+W H+FRPSY+R+ + L++ + A TATAT +D++ L
Sbjct: 132 IHFVAVDEAHCVSQWGHDFRPSYLRI-SKFLQSLPARPLVGAFTATATEEVRQDIIRMLG 190
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
+ N R NL+ SV L G N++ +V +R + + +
Sbjct: 191 LRKPNCFITGFDRPNLKFSV-LRGENKK----VFVQNRLRNNRDDSG---IIYAATRKDV 242
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + + L SV YH+G+P ++R R QE F ++I V+VAT AFGMG+DK +V VI
Sbjct: 243 DRLYKLLKGQGFSVGCYHAGLPDQERKRNQEKFIYDEIAVMVATNAFGMGIDKSNVRFVI 302
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
HY++P+++E Y QE GRAGRDG + C L
Sbjct: 303 HYNMPKNIESYYQEAGRAGRDGEPAECFLLF 333
>gi|375129367|ref|YP_004991462.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii NCTC 11218]
gi|315178536|gb|ADT85450.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii NCTC 11218]
Length = 611
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 206/354 (58%), Gaps = 14/354 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR V+GY +FRDGQ E I+ + + ++++PTG GKSLCYQIPA+ G+T+V+ PL+
Sbjct: 19 ILRDVFGYQTFRDGQQEVIESAVAGRDALVIMPTGGGKSLCYQIPALAREGVTVVISPLI 78
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++S+Q E + + G +K+L+VSPER L +F+
Sbjct: 79 SLMKDQVDQLKANGVAAECVNSTQSREALMGIYNRMHSGQLKLLYVSPERVLTGEFIERL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L +++ VDEAHC+S+W H+FRP Y L L+ + I+A+TATA T D+
Sbjct: 139 HNLPL-AMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFPQVPIMALTATADDATRSDI 195
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L + ++ + R N++ ++ E+ V +V + + K + + G
Sbjct: 196 LSRLNLTDPHVYLGSFDRPNIRYTLM--------EKHKPVSQVIRYLDTQKGHCGIIYCG 247
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 248 SRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPN 307
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRSLMYSDG 542
V V+H+ +P ++E Y QE GRAGRDG + + D DI + R SDG
Sbjct: 308 VRFVVHFDIPRNIESYYQEPGRAGRDGLPAEAVMLYDPADIAWLRRMLDEKSDG 361
>gi|313148719|ref|ZP_07810912.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
gi|313137486|gb|EFR54846.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
Length = 607
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 199/335 (59%), Gaps = 12/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I+ ++ K+ ++++PTG GKS+CYQ+PA+++ G +V+ PL++
Sbjct: 11 LKTYFGYDSFRPLQEEIIRNLMSKRDALVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 70
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIF 310
LM DQ+ L I G L+SS E A R G +K+L++SPE+ L+ AD+L
Sbjct: 71 LMKDQVESLCANGIPAGALNSSNDESENANLRRACISGKLKLLYISPEKLLSEADYL--- 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL VDEAHC+S+W H+FRP Y R+ LR + ++A+TATA T D+
Sbjct: 128 LRDMTISLFAVDEAHCISQWGHDFRPEYARM--GFLRTQFPNVPMIALTATADKITREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL LSV G + + A VD + S Y + S
Sbjct: 186 VRQLQLKQPEIFISSFDRPNLSLSVK-RGYQPKEKSKAIVDFIARHRDESGIIYCMSRS- 243
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L + I YH+G+ A+ R Q+ F +++I VV AT+AFGMG+DK +
Sbjct: 244 ---KTETVAQMLQKHGIRCGVYHAGLSARQRDEAQDDFINDRIEVVCATIAFGMGIDKSN 300
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY+LP+S+E + QEIGRAGRDG S LF
Sbjct: 301 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILF 335
>gi|421525731|ref|ZP_15972341.1| ATP-dependent DNA helicase RecQ [Fusobacterium nucleatum ChDC F128]
gi|402258300|gb|EJU08772.1| ATP-dependent DNA helicase RecQ [Fusobacterium nucleatum ChDC F128]
Length = 606
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 195/333 (58%), Gaps = 11/333 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ YGYD+FR+GQ + I +L+KK+ + ++ TGAGKS+CYQIPA+I GLT+++ PL
Sbjct: 7 KILKEYYGYDNFREGQEKIIDAILEKKNVLGIMTTGAGKSICYQIPALIFEGLTIIISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +L+SS +E + + I+ G IK+L++SPER N FL+
Sbjct: 67 ISLMKDQVDSLRLIGIEASYLNSSLDNDEYNKILFKIKRGKIKLLYISPERLENKFFLN- 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTL 367
F T IS+VVVDEAHCVS+W NFR SY+R+ + + ++ LA TATAT
Sbjct: 126 FIKTVKISMVVVDEAHCVSQWGENFRRSYLRIADFVKYITGKSQIQT-LAFTATATPKIK 184
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE---VFSFHRSSKHYY 424
D++ L I + RDN+ V +N ++ +D + + R K
Sbjct: 185 MDIIEKLNIVDPFIYVDYFNRDNIYFKVV---DNSGFDKELDIDSKPFIIDYLRKHKGKS 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ D I YL SV YH G+ ++R + Q+LF + + ++VAT AFGM
Sbjct: 242 GIIYCSTRKNVDDIYSYLVGFDRSVTKYHGGMSKEERDKNQKLFLDDDVEIMVATNAFGM 301
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G++K ++ VIH ++P LE Y QE GRAGRDG
Sbjct: 302 GINKSNIRYVIHANIPADLESYYQEAGRAGRDG 334
>gi|301066129|ref|YP_003788152.1| superfamily II DNA helicase [Lactobacillus casei str. Zhang]
gi|300438536|gb|ADK18302.1| Superfamily II DNA helicase [Lactobacillus casei str. Zhang]
Length = 592
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI VL +ST++V+PTG GKSLCYQIPAM+L GLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ +E+A+ + + G IK+L+V+PERF + D+
Sbjct: 69 ALMKDQVDALNDNGIPAAFINSTLDYQEIADRLDQARSGRIKLLYVAPERF-DTDWFVQR 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGSTDISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I R NL V R + Y+ + + I+ S
Sbjct: 187 CQRLAIPADGMINTGFERSNLSFKVV-----RDQDEDRYLLDYLKLNVDQAG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D + +L + V YH+G+ R+ QE F ++ +++AT AFGMG+DK +
Sbjct: 240 RK-EVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ +E Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDVESYYQEAGRAGRDG 325
>gi|262172709|ref|ZP_06040387.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus MB-451]
gi|261893785|gb|EEY39771.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus MB-451]
Length = 620
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 200/349 (57%), Gaps = 20/349 (5%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I L + +++++PTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIDAALQGRDSLVIMPTGGGKSLCYQIPALVREGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLTREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSNLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNIPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN---ERSAYVDEVFSFHRSSKHYYIL 426
+M Q+ QL D Q S N + E+ V +V + + + +
Sbjct: 204 IM-----------QRLQLNDPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQCGI 252
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG+
Sbjct: 253 IYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGI 312
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+K +V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 313 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|109896583|ref|YP_659838.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas atlantica T6c]
gi|109698864|gb|ABG38784.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas atlantica T6c]
Length = 602
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 199/350 (56%), Gaps = 17/350 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FRDGQ + I+ +L ++++PTG GKSLCYQIPA++L GLT+VV PL+
Sbjct: 14 VLKTVFGYDEFRDGQRDVIEKILQGHDVLVLMPTGGGKSLCYQIPALVLEGLTIVVSPLI 73
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L + +++S+ EE+ R +Q G K+++V+PER + DF+
Sbjct: 74 ALMKDQVDALVASGVSAAYINSNLSSEEIHNVYRGMQDGHYKLIYVAPERLMQFDFIQRL 133
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L +L VDEAHCVS W H+FR Y RL L+ + ++ +TATA TT D+
Sbjct: 134 HSLEL-ALFAVDEAHCVSHWGHDFRKEYRRL--GQLKQQFPTVPVVGLTATADITTRSDI 190
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY--VDEVFSFHRSSKHYYILQI 428
+ L + + + + R N+ R N+ Y D+V + + + I+
Sbjct: 191 LQQLALQDPFIFKGSFDRPNI----------RYNQLFKYKATDQVIQYVKQQEGSGIIYC 240
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + + D +S L I+ YH+G+ R +IQ F + I ++VATVAFGMG++K
Sbjct: 241 NSRK-KVDDLSIALARQGINCAGYHAGLEGPIRDKIQRDFIQDNIDIIVATVAFGMGINK 299
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
+V V+H+ LP S+E Y QE GRAGRDG + L D+ R+R +
Sbjct: 300 SNVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWI 349
>gi|390953896|ref|YP_006417654.1| ATP-dependent DNA helicase RecQ [Aequorivita sublithincola DSM
14238]
gi|390419882|gb|AFL80639.1| ATP-dependent DNA helicase RecQ [Aequorivita sublithincola DSM
14238]
Length = 692
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/368 (35%), Positives = 211/368 (57%), Gaps = 14/368 (3%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
+ N+ LL+ +GYD F Q E I +LD+K T+ ++PTG GKSLC+Q+PA+ L G
Sbjct: 5 TQHNIADLLKTHFGYDKFLPNQEEIINNILDQKDTIAIMPTGGGKSLCFQLPALALDGTA 64
Query: 245 LVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
+V+ PL+ALM DQ+ L I F +SSQ EE + ++ +Q G +K+L+V+PE
Sbjct: 65 IVISPLIALMKDQVDALKANGISATFFNSSQPYEEQQQVLKELQNGNLKLLYVAPESLPQ 124
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
+F+ + I+L +DEAHC+S W H+FRP+Y +L++ L+ + ++A+TATA
Sbjct: 125 LNFI---LNSIKINLFAIDEAHCISSWGHDFRPAYTQLKS--LKEQFPTVPLIALTATAD 179
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
T D+ + L IP + + R NL L V G NR + + + HR
Sbjct: 180 RATREDIAAQLSIPNAKTFIASFDRPNLYLDVR-PGQNRNKQ----ILDFLKIHRDECGI 234
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I +S K T+ ++ L ++YH+G+ +++R++IQE F ++ ++VAT+AFG
Sbjct: 235 -IYCLSRK--STEKLAATLSSKGYKAEAYHAGLTSEERTQIQENFINDVSPIIVATIAFG 291
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK +V VIHY++P++++ Y QEIGR+GRDG ++ LF LR
Sbjct: 292 MGIDKSNVRWVIHYNMPKNIDGYYQEIGRSGRDGLPAHTILFYSFADVIMLRKFAEGTET 351
Query: 544 DEYAINKF 551
+ Y + K
Sbjct: 352 EAYQLAKL 359
>gi|423682540|ref|ZP_17657379.1| ATP-dependent DNA helicase [Bacillus licheniformis WX-02]
gi|383439314|gb|EID47089.1| ATP-dependent DNA helicase [Bacillus licheniformis WX-02]
Length = 601
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 198/337 (58%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVL-DKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL+ +GY S R GQ +AI+ V+ +++ T ++PTG GKS+CYQIPA+++ G T+V+ PL
Sbjct: 16 LLQHYFGYPSLRPGQKKAIQSVVSERRDTACIMPTGGGKSICYQIPALLMEGTTIVISPL 75
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +++SS E+AE + + + G K+ +V+PER + +F+
Sbjct: 76 ISLMKDQVDALNQLGIQAAYVNSSLGHNEIAERLSVFKEGGYKLFYVTPERLTSPEFIRA 135
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ I LV +DEAHC+S+W H+FRPSY + L + +LA+TATAT D
Sbjct: 136 ISHIH-IPLVAIDEAHCISQWGHDFRPSYRHIEG-FLNSLGTRPVVLALTATATPEVHED 193
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ + L I N + RDNL + L G NR +YV++ +RS + +
Sbjct: 194 ICTQLGIEKENTVFTGFSRDNLTFKI-LKGENRDRFIESYVEK----NRSEAG---IIYT 245
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E + IS L I+ YH G+ ++R R Q+LF +++I V+ AT AFGMG+DK
Sbjct: 246 ATRKEAERISSRLSQKGIAAGCYHGGMDDEERDRQQDLFLNDEISVMTATSAFGMGIDKS 305
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ VIH +P+++E Y QE GRAGRDG S C L
Sbjct: 306 NIRYVIHAQIPKNMESYYQEAGRAGRDGLDSECILLF 342
>gi|424030704|ref|ZP_17770183.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-01]
gi|408881586|gb|EKM20462.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HENC-01]
Length = 611
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 202/349 (57%), Gaps = 12/349 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FRDGQ I ++ + ++++LPTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 18 RVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+++VSPER L DF+
Sbjct: 78 ISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPERVLMRDFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L S++ VDEAHC+S+W H+FRP Y L L+ + + +A+TATA T RD
Sbjct: 138 LENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFSHVPFMALTATADDATRRD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L++ + + R N++ ++ E+ V ++ + + K +
Sbjct: 195 ILERLQLNNPEVYLGSFDRPNIRYNLV--------EKHKPVSQIVRYLETQKGNCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
+V V+H+ +P ++E Y QE GRAGRDG + + D LR ++
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPANISWLRRML 355
>gi|255037625|ref|YP_003088246.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
gi|254950381|gb|ACT95081.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
Length = 717
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 216/378 (57%), Gaps = 22/378 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I ++ + M+++PTG GKS+C+QIPA++ GLT+V+ PL+A
Sbjct: 9 LKKYFGYDSFRPQQSEIIDTIMANRDCMVLMPTGGGKSVCFQIPAVLRDGLTIVISPLIA 68
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I+ FL+S+ E + + I++G +K+L+++PER + +
Sbjct: 69 LMKDQVEALRGNGINAAFLNSTISGAEQDQIMWQIRLGELKLLYIAPERLFAGNTFDLLR 128
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ++L +DE+HC+S W H+FRP Y +L +LL+ R I+A+TATA T RD++
Sbjct: 129 EWN-VTLFAIDESHCISSWGHDFRPEYRQL--NLLKLRFPDVPIVALTATADRVTRRDIL 185
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY-YILQISG 430
L I + + R NL L+V L G R + +V++ H Y L G
Sbjct: 186 KQLNIEHAETFISSFDRPNLSLNV-LPGRKRIEQIQRFVNK----HEGQPGIIYCLSRKG 240
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
T+ ++ L V YH+G+P RS++QE F + I+++VAT+AFGMG+DK +
Sbjct: 241 ----TETVAASLQKAGFRVAYYHAGMPGDKRSQVQENFLRDDIQIIVATIAFGMGIDKSN 296
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF---LDDITYFRLRSLMYSDGVDEYA 547
V VIHY+LP ++E + QEIGRAGRDG + LF LD IT R M ++ D+ A
Sbjct: 297 VRWVIHYNLPSNVESFYQEIGRAGRDGASADTVLFYSYLDIIT----RQDMINNS-DQSA 351
Query: 548 INKFLCQVFTNGMNSHGK 565
K L N M + +
Sbjct: 352 EQKELLHAKLNRMKQYAE 369
>gi|219668952|ref|YP_002459387.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium hafniense
DCB-2]
gi|219539212|gb|ACL20951.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium hafniense
DCB-2]
Length = 728
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 196/336 (58%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GY FR GQ + I +L T+ ++PTGAGKSL YQIPA++ G+TLV+ PL+
Sbjct: 8 LLKRYFGYSQFRKGQDKVIHSLLQSSDTVAIMPTGAGKSLSYQIPALLFDGVTLVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + F++SS +EV E I + G K+L+++PER FL++
Sbjct: 68 SLMKDQVDSLHEAGVPATFINSSLSMQEVWERINKARQGRYKLLYIAPERLEAESFLTLL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + IS V VDEAHCVS+W H+FRPSY ++ A + + + I A TATAT D+
Sbjct: 128 ESLT-ISFVAVDEAHCVSQWGHDFRPSYRKIGA-FVESLPHRPIIGAFTATATQEVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L++ + R NL+ S +L G N++ S Y + HRS + +
Sbjct: 186 VSLLKLESPQVFVTGFDRPNLKFS-TLKGENKKVFISTYCLQ----HRSESG---IIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + YL + V YH+G+ DR + QE F +K ++VAT AFGMG+DK +
Sbjct: 238 TRKEVDQLQTYLKGKGLLVGKYHAGMSDLDRQKAQEAFLYDKTPLMVATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHY++P+++E Y QE GRAGRDG + C L
Sbjct: 298 VRFVIHYNMPKNMEAYYQEAGRAGRDGEPAECILLF 333
>gi|392989724|ref|YP_006488317.1| ATP-dependent DNA helicase RecQ [Enterococcus hirae ATCC 9790]
gi|392337144|gb|AFM71426.1| ATP-dependent DNA helicase RecQ [Enterococcus hirae ATCC 9790]
Length = 583
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 196/330 (59%), Gaps = 11/330 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GY+ FR GQ E I+ VL + + ++PTG+GKS+CYQ+PA++L GLT+V+ PL+
Sbjct: 4 ILKQYFGYEVFRPGQKEIIRKVLGHEDVLGIMPTGSGKSICYQLPALMLDGLTVVISPLI 63
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + I F++SS E A RL++ I++L+V+PERF+ DF+
Sbjct: 64 SLMKDQVDAANQLGISATFINSSLDSYETASRFRLLEQQQIQLLYVAPERFIMPDFIQSM 123
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L+ +DEAHC+S+W H+FRPSY+ + A L I+A+TATAT D+
Sbjct: 124 KRWH-VQLIAIDEAHCISQWGHDFRPSYLHM-AETLNTFDQRPVIVALTATATKQVAEDI 181
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L+IP+ N IQ R+NL+L V + ++ Y+ E + R +K + +
Sbjct: 182 KRLLKIPMDNHIQTGFARENLRLQVV-----KDQKKEQYLIE---YLRINKKQSGIIYAA 233
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L SV YH G+ R+ IQE F ++ ++VAT AFGMG++K +
Sbjct: 234 TRKEVDRIYHLLKKFDFSVGRYHGGMSESQRTEIQEDFLYDRTELLVATNAFGMGINKSN 293
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLS 520
+ VIHY +P SLE Y QE GRAGRDG LS
Sbjct: 294 IRFVIHYQIPGSLEAYYQEAGRAGRDGLLS 323
>gi|420212435|ref|ZP_14717786.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM001]
gi|394279869|gb|EJE24166.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM001]
Length = 592
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLYVAPERFENTFFLNLLRKIE- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ +V+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEIVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|386821390|ref|ZP_10108606.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
gi|386426496|gb|EIJ40326.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
Length = 699
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 136/336 (40%), Positives = 201/336 (59%), Gaps = 18/336 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I +L+ ++++PTG GKS+CYQ+PA++ GLT+V+ PL+A
Sbjct: 11 LKEYFGYDSFRPLQREIIDTILNGNDCLVIMPTGGGKSICYQLPALLQDGLTIVISPLIA 70
Query: 253 LMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I FL+SSQ E I+ IK+L+V+PE + +IF+
Sbjct: 71 LMKDQVDGLNVNGIPACFLNSSQSTAEQEVIFNDIEAKKIKLLYVAPESL--SYLENIFS 128
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+T ISL+ VDEAHC+S W H+FRP+Y +L L+ R ++A+TATA T D+
Sbjct: 129 STK-ISLIAVDEAHCISSWGHDFRPAYTQL--GFLKNRFPNTPLIALTATADKATREDIA 185
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF--HRSSKHYYILQIS 429
+ L I + + R NL L V G +R + ++ F R ++ + +S
Sbjct: 186 NQLNISNAKKFVASFDRKNLSLEVR-PGTDR-------IKQIIQFLNKRPNESGIVYCLS 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K E+ I+ L + ++YH+G+ RS++QE F ++K ++V ATVAFGMG+DK
Sbjct: 238 RKTTES--IAEKLQQAGYNAEAYHAGVNHDGRSKVQEDFINDKTQIVCATVAFGMGIDKS 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+V VIHY+LP+++E Y QEIGRAGRDG SY LF
Sbjct: 296 NVRWVIHYNLPKNIEGYYQEIGRAGRDGLPSYTLLF 331
>gi|390440423|ref|ZP_10228752.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
gi|389836165|emb|CCI32878.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
Length = 703
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 209/359 (58%), Gaps = 21/359 (5%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ E+L + L+ +GYD FR Q + I+ L+ + ++++PTG GKSLC+Q+PA+I G+
Sbjct: 2 AAIESLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGV 61
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ ++V E LI G IK+L+V+PER L
Sbjct: 62 TVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLL 121
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL++ ++ + VDEAHCVS+W H+FRP Y +++ +R R ILA+T
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQ--VRQRFPSVPILALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATAT D++ L + +++ + R NL V Q + S +++ + +
Sbjct: 180 ATATQQVREDIIQQLGLRDTSIHTASFNRPNLYYEV-------QPKTSKSYQQLYQYIKG 232
Query: 420 SKHYYILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
K I+ IS K D ++ L + I YH+G+ ++RS Q F + ++++VA
Sbjct: 233 QKGSGIVYCISRK--TVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVA 290
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD-----DITYF 532
T+AFGMG++K DV V+HY LP +LE Y QE GRAGRDG + C LF I YF
Sbjct: 291 TIAFGMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYF 349
>gi|269103722|ref|ZP_06156419.1| ATP-dependent DNA helicase RecQ [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163620|gb|EEZ42116.1| ATP-dependent DNA helicase RecQ [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 613
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 201/345 (58%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL V+GY FRDGQ + I L++ +++++PTG GKSLCYQIPA++L GLTLV+ PL+
Sbjct: 18 LLEDVFGYQQFRDGQQDIITTALNRSDSLVIMPTGGGKSLCYQIPALLLDGLTLVISPLI 77
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I + S+ +E+ ++ G +K+L+VSPER L DF++
Sbjct: 78 SLMKDQVDQLVANGIQAACIHSALTRDEIETVFSQLESGELKLLYVSPERVLMRDFIARL 137
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L +L+ VDEAHC+S+W H+FRP Y L L+ ++A+TATA TT +D+
Sbjct: 138 QQVKL-ALLAVDEAHCISQWGHDFRPEYAEL--GQLKQMFAPLPVMALTATADETTRQDI 194
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L + ++ + R N++ ++ E+ + ++ S+ S + +
Sbjct: 195 ISRLALEQPHIHLGSFDRPNIRYTLL--------EKYKPLSQLLSYLASVRGQCGIIYCN 246
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ I LC+N + +YH+G+ DR+ +QE F + I +VVATVAFGMG++K +
Sbjct: 247 SRKRVEQICEKLCENGLRAAAYHAGMSVNDRAYVQEAFQRDDIHIVVATVAFGMGINKPN 306
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V VIH+ +P ++E Y QE GRAGRDG + L D D+ + R
Sbjct: 307 VRFVIHHDIPRNIESYYQETGRAGRDGLPAEAVLLYDPADMAWLR 351
>gi|319793441|ref|YP_004155081.1| ATP-dependent DNA helicase, recq family [Variovorax paradoxus EPS]
gi|315595904|gb|ADU36970.1| ATP-dependent DNA helicase, RecQ family [Variovorax paradoxus EPS]
Length = 573
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/352 (39%), Positives = 205/352 (58%), Gaps = 10/352 (2%)
Query: 176 AVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQI 235
A ++ R++ + ++LR V+G+ R GQ + I+ VL ST+ V+PTGAGKSLCYQ+
Sbjct: 3 AGKSPREKPPARRVDQVLRDVFGHKRLRAGQADVIERVLAGLSTLAVMPTGAGKSLCYQL 62
Query: 236 PAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVL 294
PA++L G T+VV PL+ALM DQ L + I ++SS EE+A++ I G +++
Sbjct: 63 PAVLLEGQTVVVSPLIALMKDQCDRLRALGIRAVQVNSSLGAEELAQSEADIDAGTARIV 122
Query: 295 FVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC 354
+PER + DFL ++LV VDEAHC+S+W H+FRP+++ + +RA L
Sbjct: 123 LTTPERLSDPDFLRRL-GVHPVALVAVDEAHCISQWGHDFRPAFLEI-GPAIRA-LGSPP 179
Query: 355 ILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVF 414
+LA+TATA DVM L+IP S L+ R NL+ +V N ++ R V+ V
Sbjct: 180 VLALTATAGDDVAADVMKLLDIPPSGLVDTGAYRANLRFAVEQLANEKERLRRT-VEFVR 238
Query: 415 SFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
S Y + +H L R D S+++ YH + A++RS QE F + ++R
Sbjct: 239 ETPGSGIVYAATVKAAEHAFDALKVR---DESVAL--YHGKLGARERSAAQEAFMAGEVR 293
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V+VAT AFGMG+DK D+ V+H +P SL Y QE GRAGRDG+ + C L
Sbjct: 294 VMVATNAFGMGIDKPDIRFVLHCQMPASLHAYYQEAGRAGRDGKEARCLLLF 345
>gi|392971332|ref|ZP_10336728.1| putative ATP-dependent DNA helicase [Staphylococcus equorum subsp.
equorum Mu2]
gi|403047274|ref|ZP_10902742.1| ATP-dependent DNA helicase [Staphylococcus sp. OJ82]
gi|392510724|emb|CCI59998.1| putative ATP-dependent DNA helicase [Staphylococcus equorum subsp.
equorum Mu2]
gi|402762808|gb|EJX16902.1| ATP-dependent DNA helicase [Staphylococcus sp. OJ82]
Length = 592
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/333 (39%), Positives = 194/333 (58%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GYD+FR GQ E I V++ ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 9 FGYDTFRPGQKEIITKVMNHQNALGVLPTGGGKSICYQVPGLMLGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E ++ G I+ L+V+PERF NA F+ + +
Sbjct: 69 QVDQLKAMGIRAAYLNSSLTQKQQKEIEAQLRKGEIQFLYVAPERFDNAYFVQMVQQLN- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + I+A+TATAT +D+M L
Sbjct: 128 IPLVAFDEAHCISKWGHDFRPSYRDVIHKVFALPQDF-TIVALTATATIEVQKDIMDRLN 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ I+ + R NL V N +R +V E + K I+ S + +
Sbjct: 187 INKNDEIKTSTKRRNLVFQV-----NPTYQRQKFVLEYVK--KYQKESGIIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L N I +YH G+ K+R Q F +++RVVVAT AFGMG+DK +V VI
Sbjct: 239 EELQEALAINDIKSTTYHGGLSNKEREAAQNDFVYDRVRVVVATNAFGMGIDKSNVRFVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLNSDCILLFSE 331
>gi|422007125|ref|ZP_16354111.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri Dmel1]
gi|414097015|gb|EKT58670.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri Dmel1]
Length = 608
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 202/355 (56%), Gaps = 34/355 (9%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L +GY SFR GQ I +LDK+ ++++PTG GKSLCYQ+PA++ G+TLVV PL+
Sbjct: 16 VLNSTFGYQSFRPGQDAVIGAILDKRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLI 75
Query: 252 ALMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
+LM DQ+ L +HG L+SSQ +E + + L G IK+L+V+PER L FLS
Sbjct: 76 SLMKDQVDQLR--LHGVNAACLNSSQTSQEQRQIMELCSQGEIKLLYVAPERLLTDYFLS 133
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+ I+L+ VDEAHC+S+W H+FRP Y L LR L ++A+TATA TT
Sbjct: 134 QLAGWN-ITLLAVDEAHCISQWGHDFRPEYRAL--GQLRQSLPNVPVMALTATADETTRA 190
Query: 369 DVMSALEI--PLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV------DEVFSFHRSS 420
D++ LE+ PL V +S +R N R V D+++ F +
Sbjct: 191 DIIRLLELHEPL----------------VHVSSFDRPNIRYTLVEKYKPLDQLWFFIKGQ 234
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480
K + + + + L +SV +YH+G+ A R +Q+ F + ++VVVATV
Sbjct: 235 KGKAGIVYCNSRSKVEETTERLQKRGLSVAAYHAGLEAAQREWVQDAFLKDNLQVVVATV 294
Query: 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
AFGMG++K +V V H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 295 AFGMGINKSNVRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLR 349
>gi|397690915|ref|YP_006528169.1| ATP-dependent DNA helicase, RecQ family [Melioribacter roseus P3M]
gi|395812407|gb|AFN75156.1| ATP-dependent DNA helicase, RecQ family [Melioribacter roseus P3M]
Length = 847
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 199/339 (58%), Gaps = 13/339 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GY++FR GQ E I +L+ ++T+ ++PTG GKS+CYQIPA++ L++V+ PL
Sbjct: 5 KILKEFFGYENFRPGQKEIIDSILEGRNTLAIMPTGGGKSICYQIPALLSDSLSIVISPL 64
Query: 251 VALMIDQLRHLPPVIH-GGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ + +++SS P+E+ T R I G IK+L+V+PE+ N DF
Sbjct: 65 ISLMKDQVDSINQKEEVAAYINSSIDPKEIYSTYRNIDSGKIKLLYVAPEKLDNKDFTEK 124
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ + + VDEAHC+SEW HNFRPSY +++ + + I A TATAT D
Sbjct: 125 IRSVKP-AFLFVDEAHCISEWGHNFRPSYRKIKE--FGEYVGIAKISAFTATATEDVRED 181
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+++ L + + R NL L+V + ++ + + I+ +
Sbjct: 182 IVAQLGMKNPRVFVYGFERSNLHLNVIRTLRKKET--------LLKILNENGKPAIVYTA 233
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ + T+ ++++L DN + YH+G+ + R IQ+ F S + + ++AT AFGMG+DK
Sbjct: 234 TRRY-TEELAKFLTDNGVVSSYYHAGLTTEMRKIIQDDFISGRTQTIIATNAFGMGIDKS 292
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
D+ ++HY++P +LE Y QEIGRAGRDG+ S L D+
Sbjct: 293 DIRTIVHYNIPGNLENYYQEIGRAGRDGKPSNIFLLYDE 331
>gi|359687049|ref|ZP_09257050.1| DNA helicase [Leptospira licerasiae serovar Varillal str. MMD0835]
gi|418750212|ref|ZP_13306498.1| ATP-dependent DNA helicase, RecQ family [Leptospira licerasiae str.
MMD4847]
gi|418755960|ref|ZP_13312148.1| ATP-dependent DNA helicase, RecQ family / HRDC domain multi-domain
protein [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|384115631|gb|EIE01888.1| ATP-dependent DNA helicase, RecQ family / HRDC domain multi-domain
protein [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|404272815|gb|EJZ40135.1| ATP-dependent DNA helicase, RecQ family [Leptospira licerasiae str.
MMD4847]
Length = 621
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 199/347 (57%), Gaps = 8/347 (2%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI-LPG 242
+S E+ ++L +G+ FR GQ EAI+ +L++K + +LPTGAGKSL YQ+P+
Sbjct: 10 SSIEDWKKILHTHFGFSQFRQGQWEAIQALLERKDVLAILPTGAGKSLIYQLPSFAESSS 69
Query: 243 LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
LT+V+ PL+ALM DQ+ L I + +S+Q E + G I++L++SPER
Sbjct: 70 LTIVISPLIALMKDQVDGLKARGIQAAYCNSTQDDLEQVRVLSSAATGKIRILYISPERA 129
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC-ILAMTA 360
++ FL++ +SL+ VDEAHCVS+W H+FRP Y +L LR+ L +A+TA
Sbjct: 130 VSRSFLNLLPKLP-VSLMAVDEAHCVSQWGHDFRPEYRKLHT--LRSYLQEGTPWVALTA 186
Query: 361 TATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY-VDEVFSFHRS 419
TAT +D+ +L + +Q R+NL+ SV + R+ E S + E +F +S
Sbjct: 187 TATDRVKKDISDSLGLKSPLYVQGTYARENLKFSVVYPDSEREKESSLLEILEKGNFQKS 246
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
+ I+ S + + D I L + V YH+G R R QE + S K ++VAT
Sbjct: 247 TSGKAIIYCSTRA-KVDEIYELLRKSGYKVGKYHAGRTDSSRERTQEGYTSGKTNILVAT 305
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
AFGMGLD +V V+HY +P SLE Y QE GRAGRDG+ S C LF
Sbjct: 306 NAFGMGLDSPNVRLVLHYQVPSSLESYYQEAGRAGRDGKNSDCILFF 352
>gi|85705872|ref|ZP_01036968.1| ATP-dependent DNA helicase RecQ [Roseovarius sp. 217]
gi|85669460|gb|EAQ24325.1| ATP-dependent DNA helicase RecQ [Roseovarius sp. 217]
Length = 678
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 191/328 (58%), Gaps = 14/328 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LLR V+G+D+FR GQ E I V +T+ ++PTG GKSLC+QIPA++ G+T+V+ PL+
Sbjct: 7 LLRDVFGFDAFRPGQEEIIHTVATGCNTLAIMPTGGGKSLCFQIPALMREGVTVVISPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+R L + G L+S EE AE + ++ G +++L+++PER L +
Sbjct: 67 ALMRDQVRALKAAGVEAGALTSGNTEEETAEVWQALEAGRLRLLYIAPERLAAGSSLGML 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L+ VDEAHCVS+W H+FRP Y+R+ LR LNV + A TATA T ++
Sbjct: 127 RRIG-VGLIAVDEAHCVSQWGHDFRPDYLRI--GELRRALNVP-LAAFTATADAETRDEI 182
Query: 371 MSAL-EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L + + + R N+ ++ + N R ++ +F + K +
Sbjct: 183 VEKLFDGQAPQIFLQGFDRPNIHMAFAAKDNPRA--------QIMAFAAARKGQSGIVYC 234
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G +T+ ++R L D S +YH G+ A+ R ++ F S +VVATVAFGMG+DK
Sbjct: 235 GTRAKTETLARALLDAGHSACAYHGGMEAEARRVVEGRFSSEDGLIVVATVAFGMGVDKP 294
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDG 517
D+ V H LP+S+E Y QEIGRAGRDG
Sbjct: 295 DIRWVAHADLPKSIEGYYQEIGRAGRDG 322
>gi|392544324|ref|ZP_10291461.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas piscicida JCM
20779]
Length = 644
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/435 (32%), Positives = 243/435 (55%), Gaps = 24/435 (5%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ + R GQ E I+ +L +ST+ + TGAGKSLCYQ+PA++ G+ LVV PL+ALM +
Sbjct: 15 FGHTTLRPGQSEVIESILKGQSTIAIFATGAGKSLCYQLPAIMKQGVCLVVSPLLALMHE 74
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q +L + L S+Q EE ++ A+KVLF+S ER LN+ + S
Sbjct: 75 QRDYLQSKGVATACLDSTQSKEETLRIENAVRNNALKVLFISVER-LNSQKARTLLSKSN 133
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
IS +V+DEAHC+SEW HNFRP Y L+ + R L + +L +TATAT RD+ +
Sbjct: 134 ISFLVIDEAHCISEWGHNFRPDY--LKVAKYRHELGINQVLLLTATATNKVARDMAGKFD 191
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
+ N+++ R NL LS ++++E + +F + +K I+ ++ + +
Sbjct: 192 VTDQNIVRTGFYRRNLFLSAVHISESQKDEY------LLAFLKKAKGAGIVYVTQQK-QA 244
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ +++ + ++H+ + ++ +++IQ F + +VVAT+AFGMG+DK DV V+
Sbjct: 245 EEVAKMITACGFPAVAFHASLQSEKKAQIQADFLTKANLIVVATIAFGMGVDKPDVRWVL 304
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQV 555
HY +P+S+E Y QE+GRAGRDG ++C +++ L + +Y+ ++ ++ + ++
Sbjct: 305 HYDMPKSIEGYSQEVGRAGRDGENAHCVALINNEKIATLENFVYAGALERESLIQLFNEI 364
Query: 556 FTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH 615
F + + L + + K +I + V+ TL+ LEL YLQ+ F
Sbjct: 365 FGDPATDY----HLNEYDLAYKTNINQLVLKTLIVQLELQ--GYLQVNYSY-------FA 411
Query: 616 KTTPTLLADKDKMVA 630
+ + + DKDK++A
Sbjct: 412 ELSIAFIQDKDKILA 426
>gi|327402848|ref|YP_004343686.1| ATP-dependent DNA helicase RecQ [Fluviicola taffensis DSM 16823]
gi|327318356|gb|AEA42848.1| ATP-dependent DNA helicase RecQ [Fluviicola taffensis DSM 16823]
Length = 726
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/371 (37%), Positives = 206/371 (55%), Gaps = 19/371 (5%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L LR +G+D F+ Q + I VL KK+T +++PTG GKSLCYQ+PA++ G +VV
Sbjct: 5 DLKEALRKFFGFDQFKGHQEKIITNVLQKKNTFVIMPTGGGKSLCYQLPALLSEGTAIVV 64
Query: 248 CPLVALM---IDQLRHLP---PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
PL+ALM +D +R++ + H FL+SS E+ I G K+L+V+PE
Sbjct: 65 SPLIALMKNQVDAIRNVSDHNSIAH--FLNSSLSKTEINRVKEDILAGKTKLLYVAPESL 122
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
+ + T+ IS +DEAHC+SEW H+FRP Y RLR + +++ I+A+TAT
Sbjct: 123 TKQENIDFLTSVP-ISFFAIDEAHCISEWGHDFRPEYRRLRE--IFEKISDVAIIALTAT 179
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
AT D+ L + ++L + + RDNL + + N + E Y+ + R K
Sbjct: 180 ATPKVQADIQKNLNMMDADLFKSSFNRDNLYYEIR-AKQNVEKEIIKYIRQ-----REGK 233
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I +S K E + L N I+ +YH+G+ A R+R Q++F ++ V+VAT+A
Sbjct: 234 SGIIYCLSRKKVEE--TAELLQVNGINALAYHAGLDATTRARHQDMFLMEEVDVIVATIA 291
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541
FGMG+DK DV VIH+ +P+SLE Y QE GRAGRDG + C F +L +
Sbjct: 292 FGMGIDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGVGECITFYSYKDIEKLEKFLQGK 351
Query: 542 GVDEYAINKFL 552
V E I K L
Sbjct: 352 PVSEQEIGKQL 362
>gi|308173882|ref|YP_003920587.1| ATP-dependent nucleic acid helicase [Bacillus amyloliquefaciens DSM
7]
gi|384159107|ref|YP_005541180.1| ATP-dependent nucleic acid helicase [Bacillus amyloliquefaciens
TA208]
gi|384164476|ref|YP_005545855.1| ATP-dependent nucleic acid helicase [Bacillus amyloliquefaciens
LL3]
gi|384168147|ref|YP_005549525.1| ATP-dependent nucleic acid helicase [Bacillus amyloliquefaciens
XH7]
gi|307606746|emb|CBI43117.1| putative ATP-dependent nucleic acid helicase [Bacillus
amyloliquefaciens DSM 7]
gi|328553195|gb|AEB23687.1| ATP-dependent nucleic acid helicase [Bacillus amyloliquefaciens
TA208]
gi|328912031|gb|AEB63627.1| putative ATP-dependent nucleic acid helicase [Bacillus
amyloliquefaciens LL3]
gi|341827426|gb|AEK88677.1| putative ATP-dependent nucleic acid helicase [Bacillus
amyloliquefaciens XH7]
Length = 592
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 194/337 (57%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GYDS R GQ +AI+ V + +K+T+ ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +++S+Q ++ E + ++ GA ++ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKEGAYRLFYITPERLTSPEFIHI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ + LV +DEAHC+S+W H+FRPSY + L I+A+TATAT D
Sbjct: 128 LQNIT-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFNELKEPPVIIALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I + + R+NL V+ G N+ Y+D +KH + +
Sbjct: 186 ICKQLHIHKEHTVYTGFARENLTFKVA-KGENKDRFIEQYLDR-------NKHEAGIIYA 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
ETD I L + I+ YH G+ DR QE F +++I+V+VAT AFGMG+DK
Sbjct: 238 ATRKETDRIYEKLKRSGINAGRYHGGLADDDRKEQQERFLNDQIQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLDSECVLLF 334
>gi|255100832|ref|ZP_05329809.1| ATP-dependent DNA helicase [Clostridium difficile QCD-63q42]
Length = 827
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/342 (36%), Positives = 203/342 (59%), Gaps = 11/342 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
++ L +L YGY SFR GQ I +L +K + ++PTG GKS+CYQIPA+IL G+T+
Sbjct: 2 NKKLLEILSKYYGYTSFRKGQESIINSILSEKDVLAIMPTGGGKSICYQIPALILDGMTI 61
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ+ L + I F++SS +E E + I+ K+L+++PER
Sbjct: 62 VISPLISLMKDQVDALKTMGISAAFINSSLSSKEFNEILNNIRKNNYKILYIAPERLDAQ 121
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
+F+ + + +S V +DEAHCVS+W H+FR SY R+ + ++ + A TATA+
Sbjct: 122 EFIELINNNN-VSQVAIDEAHCVSQWGHDFRLSYRRI-SDFIKNLPKRPIVTAFTATASE 179
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+++ L + + R+NL +++ + + ++ Y+ + H++
Sbjct: 180 EVRTDIINLLCLENPDYYITGFDRENLSINIV-----KSSSKNKYILDYIQNHKNESG-- 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ ++ + E + I L +ISV YH+G+ +RS+ QE F ++ + ++VAT AFGM
Sbjct: 233 IIYVATRK-EVENIYNGLSKRNISVSKYHAGLSKNERSKNQEDFINDNVDIMVATNAFGM 291
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK ++ VIHY++P+S+E Y QEIGRAGRDG S C L
Sbjct: 292 GIDKPNIRWVIHYNMPQSIENYYQEIGRAGRDGEKSECVLLF 333
>gi|339452185|ref|ZP_08655555.1| ATP-dependent DNA helicase RecQ [Leuconostoc lactis KCTC 3528]
Length = 599
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR GQL+ I+ VL K + ++PTG GKS+ YQ+PA++ G+TLVV PL+
Sbjct: 7 ILKEVFGYDDFRTGQLDIIEKVLAHKHALAIMPTGGGKSITYQLPAVMFEGITLVVSPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I FL+S+ +E A+ + I+ G K+L+VSPER F + F
Sbjct: 67 SLMKDQVDGLNAMGIDATFLNSTLTGQEQAQRMSDIRAGFYKMLYVSPERLEIPSFFN-F 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I L+ +DEAH +S+W H+FRPSY+ + LL +L +TATAT +++
Sbjct: 126 VQQLPIELIAIDEAHVMSQWGHDFRPSYLNI-LPLLAQIPGQPAVLGLTATATDRVRQNL 184
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L + + + RDNL L + + RQ YV + + RS+ + +
Sbjct: 185 QQLLAVSDEDTVLTGFARDNLALKIVHQVDKRQ-----YVQD---YLRSNTGKSGIIYAA 236
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + +L + V YH+G+P K+R +QE F + ++V++AT AFGMG++K D
Sbjct: 237 TRKQVDELYDFLAKKGVKVGRYHAGLPEKERQAMQEAFLYDDVQVMIATNAFGMGINKPD 296
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY++P ++E Y QEIGRAGRDG
Sbjct: 297 VRFVIHYAVPGNIEAYYQEIGRAGRDG 323
>gi|326692288|ref|ZP_08229293.1| ATP-dependent DNA helicase RecQ [Leuconostoc argentinum KCTC 3773]
Length = 599
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR GQL+ I+ VL K + ++PTG GKS+ YQ+PA++ G+TLVV PL+
Sbjct: 7 ILKEVFGYDDFRTGQLDIIEKVLAHKHALAIMPTGGGKSITYQLPAVMFEGITLVVSPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I FL+S+ +E A+ + I+ G K+L+VSPER F + F
Sbjct: 67 SLMKDQVDGLNAMGIDATFLNSTLTGQEQAQRMSDIRAGFYKMLYVSPERLEIPSFFN-F 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I L+ +DEAH +S+W H+FRPSY+ + LL +L +TATAT +++
Sbjct: 126 VQQLPIELIAIDEAHVMSQWGHDFRPSYLNI-LPLLAQIPGQPAVLGLTATATDRVRQNL 184
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L + + + RDNL L + + RQ YV + + RS+ + +
Sbjct: 185 QQLLAVSDEDTVLTGFARDNLALKIVHQVDKRQ-----YVQD---YLRSNTGKSGIIYAA 236
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + +L + V YH+G+P K+R +QE F + ++V++AT AFGMG++K D
Sbjct: 237 TRKQVDELYDFLAKKGVKVGRYHAGLPEKERQAMQEAFLYDDVQVMIATNAFGMGINKPD 296
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHY++P ++E Y QEIGRAGRDG
Sbjct: 297 VRFVIHYAVPGNIEAYYQEIGRAGRDG 323
>gi|212556507|gb|ACJ28961.1| ATP-dependent DNA helicase RecQ [Shewanella piezotolerans WP3]
Length = 607
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 209/353 (59%), Gaps = 13/353 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
+ L L+ V+GY +FRDGQ E I+ + + ++++PTG GKSLCYQ+PA+ LPGLT+V
Sbjct: 11 DQLSASLQSVFGYRTFRDGQREVIEQICAGQDCLVIMPTGGGKSLCYQLPALQLPGLTVV 70
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL++LM DQ+ L + +L+SSQ EE + ++ ++ G +K+L+VSPER L A
Sbjct: 71 VSPLISLMKDQVDSLIQTGVSAAYLNSSQPREESLKILQQMRYGELKLLYVSPERLLQAS 130
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F+ + ISL +DEAHC+S+W H+FRP Y L LR + + I+A+TATA
Sbjct: 131 FIDRLHELN-ISLFAIDEAHCISQWGHDFRPEYAAL--GRLRQQFPLVPIMALTATADNA 187
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
T D+ L I +L+ R N++ +V+ N N+ ++D + + I
Sbjct: 188 TRVDICERLTIEPFSLLTSFD-RPNIRYTVA-EKLNAANQLRQFIDA------QNGNSGI 239
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ S + D ++ L ++YH+G ++R+ +Q+ F +++ +VVATVAFGMG
Sbjct: 240 VYCSSRR-RVDEVAERLRMQGHQAEAYHAGKTQEERADVQDRFLKDQLDIVVATVAFGMG 298
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
++K +V V+HY +P+S+E Y QE GRAGRDG S + D R+R L+
Sbjct: 299 INKSNVRYVVHYDIPKSVEAYYQETGRAGRDGLDSEALMLFDPADIGRVRHLI 351
>gi|183219733|ref|YP_001837729.1| ATP-dependent DNA helicase RecQ [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189909869|ref|YP_001961424.1| DNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167774545|gb|ABZ92846.1| DNA helicase, Superfamily II [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167778155|gb|ABZ96453.1| ATP-dependent DNA helicase RecQ [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 618
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 167/416 (40%), Positives = 217/416 (52%), Gaps = 24/416 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG-LTLVVCPLV 251
L+ +G+ FR GQ EAI+ VLD + T+ +LPTGAGKSL YQ+PA I LTLV+ PL+
Sbjct: 7 LKTKFGFSEFRLGQREAIESVLDGRDTLAILPTGAGKSLIYQLPASIQKDKLTLVISPLI 66
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ L I F +S+Q E + G ++VL VSPER L+ FL IF
Sbjct: 67 ALMKDQTESLLAKGIPAAFCNSTQDEVEQMTILSKAVRGELRVLLVSPERALSNGFLRIF 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L SLVV DEAHCVS+W H+FRP Y ++ + + ILA+TATAT DV
Sbjct: 127 REMDLFSLVV-DEAHCVSQWGHDFRPEYRQIHVLREKHPNSFFPILALTATATEKVQTDV 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNR-QNERSAYVDEVFSFHRSSKHYYILQIS 429
SAL + N++ R NL+ SV R + +R + E + R I+ +
Sbjct: 186 QSALGMRSPNVVLSTFFRPNLKFSVEYPAQERDKADRLMELLEPWKDGRKFPGRAIIYCA 245
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ +TD + L D SV YH+G R R Q + S K+ ++VAT AFGMG+D+
Sbjct: 246 TRK-KTDEVYDLLKDFGFSVGKYHAGRTDGIRERTQNAYTSGKVPILVATNAFGMGMDQP 304
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DIT--YFRLRSLMYSDGVD- 544
DV V+HY +P SLE Y QE GRAGRD S C LF D+ F L G D
Sbjct: 305 DVRLVVHYQVPASLEAYYQEAGRAGRDNLPSECVLFYKAGDVATQVFMLSKETNFKGGDT 364
Query: 545 ------EYAINKF-----LCQVFTNGMNSHGK--LCSLVKESASR-KFDIKEEVML 586
EYA N+ LC F + GK +CS S R KF E+V L
Sbjct: 365 LLKYIKEYANNEVCRQVQLCSYFGETIPPCGKCDICSETGVSVHRSKFLESEKVKL 420
>gi|420222372|ref|ZP_14727293.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH08001]
gi|394289424|gb|EJE33308.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIH08001]
Length = 592
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLYVAPERFENTFFLNLLRKIE- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFILPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|423091598|ref|ZP_17079719.1| ATP-dependent DNA helicase RecQ [Clostridium difficile 70-100-2010]
gi|357555080|gb|EHJ36773.1| ATP-dependent DNA helicase RecQ [Clostridium difficile 70-100-2010]
Length = 827
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/342 (36%), Positives = 203/342 (59%), Gaps = 11/342 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
++ L +L YGY SFR GQ I +L +K + ++PTG GKS+CYQIPA+IL G+T+
Sbjct: 2 NKKLLEILSKYYGYTSFRKGQESIINSILSEKDVLAIMPTGGGKSICYQIPALILDGMTI 61
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ+ L + I F++SS +E E + I+ K+L+++PER
Sbjct: 62 VISPLISLMKDQVDALKTMGISAAFINSSLSSKEFNEILNNIRKNNYKILYIAPERLDAQ 121
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
+F+ + + +S V +DEAHCVS+W H+FR SY R+ + ++ + A TATA+
Sbjct: 122 EFIELINNNN-VSQVAIDEAHCVSQWGHDFRLSYRRI-SDFIKNLPKRPIVTAFTATASE 179
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+++ L + + R+NL +++ + + ++ Y+ + H++
Sbjct: 180 EVRTDIINLLCLENPDYYITGFDRENLSINIV-----KSSSKNKYILDYIQNHKNESG-- 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ ++ + E + I L +ISV YH+G+ +RS+ QE F ++ + ++VAT AFGM
Sbjct: 233 IIYVATRK-EVENIYNGLSKRNISVSKYHAGLSKNERSKNQEDFINDNVDIMVATNAFGM 291
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK ++ VIHY++P+S+E Y QEIGRAGRDG S C L
Sbjct: 292 GIDKPNIRWVIHYNMPQSIENYYQEIGRAGRDGEKSECVLLF 333
>gi|258620546|ref|ZP_05715583.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus VM573]
gi|258587061|gb|EEW11773.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus VM573]
Length = 620
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 202/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALQGRDSLVIMPTGGGKSLCYQIPALVREGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTFAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSNLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNIPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|262163729|ref|ZP_06031469.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus VM223]
gi|262027709|gb|EEY46374.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus VM223]
Length = 620
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 201/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I L + +++++PTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIDAALQGRDSLVIMPTGGGKSLCYQIPALVCEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSNLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNIPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|417989302|ref|ZP_12629812.1| ATP-dependent DNA helicase [Lactobacillus casei A2-362]
gi|410538905|gb|EKQ13449.1| ATP-dependent DNA helicase [Lactobacillus casei A2-362]
Length = 592
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI VL +ST++V+PTG GKSLCYQIPAM+L GLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S+ +E+A+ + + G IK+L+V+PERF + D+
Sbjct: 69 ALMKDQVDALNDNGIPAAFINSTLDYQEIADRLDQARSGRIKLLYVAPERF-DTDWFVQR 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGSTDISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I R NL V R + Y+ + + I+ S
Sbjct: 187 CQRLAIPADGMINTGFERSNLSFKVV-----RDQDEDRYLLDYLKLNVDQAG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D + +L + V YH+G+ R+ QE F ++ +++AT AFGMG+DK +
Sbjct: 240 RK-EVDRLYTFLAHKKLPVVKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ +E Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDVESYYQEAGRAGRDG 325
>gi|114564972|ref|YP_752486.1| ATP-dependent DNA helicase RecQ [Shewanella frigidimarina NCIMB
400]
gi|114336265|gb|ABI73647.1| ATP-dependent DNA helicase RecQ [Shewanella frigidimarina NCIMB
400]
Length = 615
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 203/347 (58%), Gaps = 13/347 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY +FR+GQ E I+ L + T++++PTG GKS+CYQ+PA++LPG+T+VV PL++
Sbjct: 26 LQQVFGYRAFREGQREVIEQSLQGQDTLVIMPTGGGKSMCYQLPAIVLPGVTVVVSPLIS 85
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + +L+SS E+ AE +R + G IK+L+VSPER L DF+
Sbjct: 86 LMKDQVDSLLQSGVSAAYLNSSLPREQSAEVLRKLHSGEIKLLYVSPERLLRPDFIERLQ 145
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ +S+ VDEAHC+S+W H+FRP Y L L+ ++A+TATA T +
Sbjct: 146 SVD-VSMFAVDEAHCISQWGHDFRPEYAAL--GQLKEYFPYLPLMALTATADHATRLSIC 202
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L + L+ R N++ +V+ N R + + + I+ S +
Sbjct: 203 ERLGVTPYTLLSSFD-RPNIRYTVAEKLNAANQLR-----QFLTIQNGTSG--IVYCSSR 254
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
D ++ L + ++YH+G+ +DR +Q+ F +++ +VVATVAFGMG++K +V
Sbjct: 255 R-RVDEVAERLRLQGFNAQAYHAGLSQEDRGNVQDKFLKDQVDIVVATVAFGMGINKSNV 313
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
V+HY +P+S+E Y QE GRAGRDG + ++ D R+R L+
Sbjct: 314 RFVVHYDIPKSIEAYYQETGRAGRDGLDAEAYMLFDPADIGRVRHLI 360
>gi|163751804|ref|ZP_02159020.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
gi|161328289|gb|EDP99450.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
Length = 610
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 202/348 (58%), Gaps = 15/348 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GY +FR GQ E I+ + ++++PTG GKSLCYQ+PA+ +PGLT+VV PL++
Sbjct: 19 LQSVFGYRTFRKGQREVIEQICAGIDCLVIMPTGGGKSLCYQLPALQMPGLTIVVSPLIS 78
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L + ++ G+L+SSQ EE A +R + G +K+L+VSPER L A F+
Sbjct: 79 LMKDQVDSLQQMGVNAGYLNSSQAGEERARILREMHSGELKLLYVSPERLLQASFIERLH 138
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
ISL +DEAHC+S+W H+FRP Y L LR I+A+TATA T +D+
Sbjct: 139 ELH-ISLFAIDEAHCISQWGHDFRPEYAAL--GRLRQYFPHVPIMALTATADQATRQDIC 195
Query: 372 SALEI-PLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L I P S L R N++ +V+ E+ +++ F + + G
Sbjct: 196 QRLTITPFSFLTSFD--RPNIRYTVA--------EKLNAANQLRQFVTAQNGSSGIIYCG 245
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
D ++ L + +YH+G ++R+ +Q+ F +++ +VVATVAFGMG++K +
Sbjct: 246 SRRRVDEVAERLRLQGHNADAYHAGRTQEERTDVQDRFLKDQLDIVVATVAFGMGINKSN 305
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 306 VRYVVHYDIPKSVESYYQETGRAGRDGLDAEALMLFDPADIGRVRHLI 353
>gi|409200791|ref|ZP_11228994.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas flavipulchra
JG1]
Length = 644
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 141/435 (32%), Positives = 242/435 (55%), Gaps = 24/435 (5%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ + R GQ E I+ +L +S + + TGAGKSLCYQ+PA++ G+ LVV PL+ALM +
Sbjct: 15 FGHTTLRPGQPEVIESILQGQSAIAIFATGAGKSLCYQLPAILKQGMCLVVSPLLALMHE 74
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q +L + L S+Q EE ++ A+KVLF+S ER LN+ + S
Sbjct: 75 QRDYLQSKGVATACLDSTQSKEETLRIENAVRDNALKVLFISVER-LNSQKARTLLSQSN 133
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
IS +V+DEAHC+SEW HNFRP Y L+ + R L + +L +TATAT RD+ +
Sbjct: 134 ISFLVIDEAHCISEWGHNFRPDY--LKVAKYRHELGINQVLLLTATATNKVARDMAGKFD 191
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
+ N+I+ R NL LS + ++++E + +F + +K I+ ++ + +
Sbjct: 192 VSDQNIIRTGFYRKNLFLSAAHISESQKDEY------LLAFLKKAKGAGIVYVTQQK-QA 244
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ +++ + +++H+ + ++ +++IQ F +VVAT+AFGMG+DK DV V+
Sbjct: 245 EEVAKMITACGFPAEAFHASLQSEKKAQIQADFLGKDNLIVVATIAFGMGVDKPDVRWVL 304
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQV 555
HY +P+S+E Y QE+GRAGRDG ++C +++ L + +Y+ ++ ++ ++
Sbjct: 305 HYDMPKSIEGYSQEVGRAGRDGENAHCVALINNEKIATLENFVYASALERESLTLLFDEL 364
Query: 556 FTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFH 615
F + + L + + K +I + V+ TL+ LEL YLQ+ ++ F
Sbjct: 365 FGDPATDY----HLNEYDLAYKTNINQLVLKTLIVQLELQ--GYLQVNYSYFAELSIAFS 418
Query: 616 KTTPTLLADKDKMVA 630
+ DKDK++A
Sbjct: 419 Q-------DKDKILA 426
>gi|119470517|ref|ZP_01613220.1| ATP-dependent DNA helicase [Alteromonadales bacterium TW-7]
gi|119446218|gb|EAW27495.1| ATP-dependent DNA helicase [Alteromonadales bacterium TW-7]
Length = 607
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 127/355 (35%), Positives = 204/355 (57%), Gaps = 13/355 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY FRDGQ I L+ + T+++LPTG GKS+CYQIPA++L G+T+V+ PL+
Sbjct: 18 VLKQVFGYSEFRDGQKAVIDAALNAQDTLVLLPTGGGKSVCYQIPALVLEGVTIVISPLI 77
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + ++++S EE + + G IK+L+V+PE+ L DFL
Sbjct: 78 SLMQDQVAQLQALGVKAAYVNNSLAREEQQRVYQQLHQGLIKLLYVAPEKVLQRDFLERL 137
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ ISL +DEAHCVS W H+FRP Y RL L+ R ++A+TATA T D+
Sbjct: 138 SHLK-ISLFAIDEAHCVSHWGHDFRPHYFRLNE--LKQRFAHVPMMALTATADKATRFDI 194
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R N++ ++ E+ + ++ + + K+ +
Sbjct: 195 VEQLKLQQPYIHTGSFDRPNIRYTIE--------EKFKPMVQLLRYLKEQKNQSGIIYCT 246
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
D I+ L D ++ +YH+G+ + R +Q F + I++VVATVAFGMG++K +
Sbjct: 247 SRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPN 306
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
V V+HY +P+S+E Y QE GRAGRDG + ++ D R+R + D DE
Sbjct: 307 VRFVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRF-FEDIDDE 360
>gi|449015793|dbj|BAM79195.1| probable ATP-dependent DNA helicase RecQ [Cyanidioschyzon merolae
strain 10D]
Length = 867
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 210/380 (55%), Gaps = 32/380 (8%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G F GQLE I VL S++ + PTG GKSLC+Q+PAM+L GLTLVV PL+ALM D
Sbjct: 121 FGLSEFWPGQLEVILRVLQGHSSLAIFPTGGGKSLCFQVPAMLLDGLTLVVSPLIALMRD 180
Query: 257 QLRHLP----PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312
+ L P +H + S EV +T RL+ AI++LFV+PERF+N F + A
Sbjct: 181 HVEMLQNQGIPAMH---IHSGMSAPEVRQTYRLLSERAIRILFVAPERFVNEKFRQVI-A 236
Query: 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMS 372
+SL VVDEAHC+SEW H FRP Y+ LR A V LA+TATATT + D+
Sbjct: 237 RLQVSLFVVDEAHCLSEWGHTFRPEYLLLRQFAQGAGARV--CLALTATATTRVVDDICR 294
Query: 373 ALEIPLSNLIQKAQLRDNLQLSVSLSGN-----------NRQNERSAY--VDEVFSFHRS 419
I N+I+ + R NL L + G + + ER + V+ + S R
Sbjct: 295 HFHIHSENVIRASVHRPNLTLRCTPVGEFFGTWSPDTDKDGRLERRVFLLVERLLSRPRG 354
Query: 420 SKHYYIL-QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
S Y+ Q + L++ Y S+ +YH+G+ ++R+ Q +F S + ++VA
Sbjct: 355 STIVYVTTQKTATAVAELLVTMY----SLPAVAYHAGMTTEERASAQNIFMSGRDTIIVA 410
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRS 536
T+AFGMG+ K++V V +++ +S+E Y Q IGRAGRDG + C LFL DD+ L S
Sbjct: 411 TIAFGMGIHKQEVRYVYLFNISKSIEAYTQSIGRAGRDGEPAICELFLCADDLPA--LES 468
Query: 537 LMYSDGVDEYAINKFLCQVF 556
+ S A++ L +F
Sbjct: 469 FVLSSTPSRRAVHTLLESLF 488
>gi|402079618|gb|EJT74883.1| hypothetical protein GGTG_08721 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 815
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 165/565 (29%), Positives = 285/565 (50%), Gaps = 53/565 (9%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP--------- 241
++LR +GY FR Q AI VL ++ M+V+PTG GKSLCYQ+PA+
Sbjct: 88 KILRQTFGYGGFRLEQEAAISCVLSGRNAMVVMPTGGGKSLCYQVPAIAFAELDSADGSV 147
Query: 242 -----GLTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLF 295
G+T++V PL+ALM DQ+ L + + S++ E+ E ++ G +++L+
Sbjct: 148 RPGGHGITIIVSPLLALMRDQVEVLKRKGVAAESIDSTKTWEQQQEISAKMRNGTLRLLY 207
Query: 296 VSPERFLNADFL-SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC 354
+PER N F+ ++ I LV VDEAHC+SEW H FRP Y L+ + + E
Sbjct: 208 CAPERLNNEGFIENLKHVAGGIRLVAVDEAHCISEWGHQFRPDY--LKVARFVQEVKAER 265
Query: 355 ILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQL---SVSLSGNNRQNERSAYVD 411
+ +TATATT + DV A +I +++ + A R NL+L V L+ + +D
Sbjct: 266 AICLTATATTKVIDDVCKAFDIAKTDVFRTAPYRPNLRLLAKPVKLADDK--------LD 317
Query: 412 EVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
++ SF K ++ ++ + + + +++ L + +H+G+ +D+ Q+ F ++
Sbjct: 318 QLLSFLMGHKGPTLVYVTAQS-QAEALAQKLVKAGLRAVPFHAGMKTEDKEANQDKFMAD 376
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDI 529
K+ +VVAT+AFGMG+DK ++ V+HY +P S+EEY Q++GRAGRDG+ S C +L +D+
Sbjct: 377 KVDIVVATIAFGMGIDKPNIRNVVHYGIPGSVEEYSQQVGRAGRDGKPSSCMFYLCPEDL 436
Query: 530 TYFRLRS-LMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKES---ASRKFDIKEEVM 585
+RS L Y D A+ L +F + + + + + K S + ++DI+ +
Sbjct: 437 D---VRSVLAYGDTPTRKALGSVLQNIFDDEVTAL-PVDGVFKRSQYAQTNEYDIRANPL 492
Query: 586 LTLLTCLELGEIQYLQLLPE---LKVTCTLNFHKTTPTLLADKDKMVATILK-KSETKQG 641
+ LEL + PE K T + T+ DK I++ S+ ++G
Sbjct: 493 SIVYAMLELRFKLIRAITPEYGQYKFTTQTTYDA---TISNDKSPAAQAIVQFSSKPQRG 549
Query: 642 Q-YVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIV-----EVPSDFC 695
+ Y D+ T A ++ ++ +L L RG I Y ++ P
Sbjct: 550 KNYTMDVQTAARALNINRQEIIRKLNELHDRGFIKLTASGVENRYRVISKNLPRTPDQIN 609
Query: 696 ALSAHLTKWLSEVENCKVRKLDRMF 720
L+ + L + E V+++D++
Sbjct: 610 TLADEIFADLKQREADAVQRIDQVI 634
>gi|254975337|ref|ZP_05271809.1| ATP-dependent DNA helicase [Clostridium difficile QCD-66c26]
gi|255092727|ref|ZP_05322205.1| ATP-dependent DNA helicase [Clostridium difficile CIP 107932]
gi|255314466|ref|ZP_05356049.1| ATP-dependent DNA helicase [Clostridium difficile QCD-76w55]
gi|255517143|ref|ZP_05384819.1| ATP-dependent DNA helicase [Clostridium difficile QCD-97b34]
gi|260683366|ref|YP_003214651.1| ATP-dependent DNA helicase [Clostridium difficile CD196]
gi|260686961|ref|YP_003218094.1| ATP-dependent DNA helicase [Clostridium difficile R20291]
gi|384360977|ref|YP_006198829.1| ATP-dependent DNA helicase RecQ [Clostridium difficile BI1]
gi|260209529|emb|CBA63113.1| ATP-dependent DNA helicase [Clostridium difficile CD196]
gi|260212977|emb|CBE04278.1| ATP-dependent DNA helicase [Clostridium difficile R20291]
Length = 827
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 124/342 (36%), Positives = 203/342 (59%), Gaps = 11/342 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
++ L +L YGY SFR GQ I +L +K + ++PTG GKS+CYQIPA+IL G+T+
Sbjct: 2 NKKLLEILSKYYGYTSFRKGQESIINSILSEKDVLAIMPTGGGKSICYQIPALILDGMTI 61
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ+ L + I F++SS +E E + I+ K+L+++PER
Sbjct: 62 VISPLISLMKDQVDALKTMGISAAFINSSLSSKEFNEILNNIRKNNYKILYIAPERLDAQ 121
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
+F+ + + +S V +DEAHCVS+W H+FR SY R+ + ++ + A TATA+
Sbjct: 122 EFIELINNNN-VSQVAIDEAHCVSQWGHDFRLSYRRI-SDFIKNLPKRPIVTAFTATASE 179
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+++ L + + R+NL +++ + + ++ Y+ + H++
Sbjct: 180 EVRTDIINLLCLENPDYYITGFDRENLSINIV-----KSSSKNKYILDYIQNHKNESG-- 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ ++ + E + I L +ISV YH+G+ +RS+ QE F ++ + ++VAT AFGM
Sbjct: 233 IIYVATRK-EVENIYNGLSKRNISVSKYHAGLSKNERSKNQEDFINDNVDIMVATNAFGM 291
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK ++ VIHY++P+S+E Y QEIGRAGRDG S C L
Sbjct: 292 GIDKPNIRWVIHYNMPQSIENYYQEIGRAGRDGEKSECVLLF 333
>gi|423066192|ref|ZP_17054982.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis C1]
gi|406712234|gb|EKD07423.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis C1]
Length = 739
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 141/360 (39%), Positives = 206/360 (57%), Gaps = 16/360 (4%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A ++L + L+ +GYDSFR GQ E I+ VL K+ + ++PTG GKSLC+Q+PA++ PGL
Sbjct: 9 AQPQSLQQCLKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGL 68
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
TLVV PL+ALM DQ+ L I FL+S+ E + I G IK+L+V+PER L
Sbjct: 69 TLVVSPLIALMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQIKLLYVAPERLL 128
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL A IS +V+DEAHCVS+W H+FRP Y +++ +R+R +A+T
Sbjct: 129 SPQFLDFLDRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQ--VRSRYPHVPAIALT 186
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATAT D++ + + + + R NL V ++ + V E S
Sbjct: 187 ATATERVRFDIIKQIVLKQPYVHVASFYRSNLYYQVIPKQPKKRFPQLLKVIESMSGSG- 245
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
I+ S + + ++ L N+I YH+G+ DR F + +R++VAT
Sbjct: 246 -----IIYCSSRK-RVEEVALQLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVAT 299
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539
+AFGMG+DK DV VIHY LP+SLE Y QE GRAGRDG+ + C LF +Y ++++ Y
Sbjct: 300 IAFGMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFF---SYGDMKTIEY 356
>gi|406667163|ref|ZP_11074924.1| ATP-dependent DNA helicase recQ [Bacillus isronensis B3W22]
gi|405385010|gb|EKB44448.1| ATP-dependent DNA helicase recQ [Bacillus isronensis B3W22]
Length = 587
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 193/334 (57%), Gaps = 11/334 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR GQ + I VL+ K T++++PTG GKSLCYQIPA+ + G TLV+ PL++
Sbjct: 9 LKTNFGYDSFRPGQTQIIDNVLNNKDTLVIMPTGGGKSLCYQIPALCMEGTTLVISPLIS 68
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I +++SS EEV + +Q G IK+L+++PER N F +
Sbjct: 69 LMKDQVDMLVSSGISAAYINSSLSYEEVQNVMYGVQSGKIKLLYIAPERLENERFCNELA 128
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ + L+ +DEAHC+S+W H+FRPSY ++ LL ++A+TATAT D+
Sbjct: 129 QIN-VPLLAIDEAHCISQWGHDFRPSYRSIQ-QLLHLWDKKPTVIALTATATEEVSADIQ 186
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L I N R+NL SV L N + AY+ + + + I + K
Sbjct: 187 QLLSIEKENTFITGFARENLSFSVLLGEN-----KEAYIKKYVKANENEAG-IIYAATRK 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E+ + L + YH G+ +DR+ Q F +++I+++VAT AFGMG++K +V
Sbjct: 241 SVES--VYEMLNKAGFAAGKYHGGMFEEDRTYEQNRFLNDEIQIMVATNAFGMGINKTNV 298
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V+HY++P ++E Y QE GRAGRDG S C L
Sbjct: 299 RYVLHYNMPRNMESYYQEAGRAGRDGLDSECILL 332
>gi|359449260|ref|ZP_09238757.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20480]
gi|392537893|ref|ZP_10285030.1| ATP-dependent DNA helicase [Pseudoalteromonas marina mano4]
gi|358044909|dbj|GAA75006.1| ATP-dependent DNA helicase RecQ [Pseudoalteromonas sp. BSi20480]
Length = 607
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 127/355 (35%), Positives = 204/355 (57%), Gaps = 13/355 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY FRDGQ I L+ + T+++LPTG GKS+CYQIPA++L G+T+V+ PL+
Sbjct: 18 VLKQVFGYSEFRDGQKAVIDAALNAQDTLVLLPTGGGKSVCYQIPALVLEGVTIVISPLI 77
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + ++++S EE + + G IK+L+V+PE+ L DFL
Sbjct: 78 SLMQDQVAQLQALGVKAAYVNNSLAREEQQRVYQQLHQGLIKLLYVAPEKVLQRDFLERL 137
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ ISL +DEAHCVS W H+FRP Y RL L+ R ++A+TATA T D+
Sbjct: 138 SHLK-ISLFAIDEAHCVSHWGHDFRPHYFRLNE--LKQRFAHVPMMALTATADKATRFDI 194
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R N++ ++ E+ + ++ + + K+ +
Sbjct: 195 VEQLKLQQPYIHTGSFDRPNIRYTIE--------EKFKPMVQLLRYLKEQKNQSGIIYCT 246
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
D I+ L D ++ +YH+G+ + R +Q F + I++VVATVAFGMG++K +
Sbjct: 247 SRKRVDDIAEKLADAGLNAAAYHAGMSNEQRQFVQTGFARDDIQIVVATVAFGMGINKPN 306
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
V V+HY +P+S+E Y QE GRAGRDG + ++ D R+R + D DE
Sbjct: 307 VRFVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVRRF-FEDIDDE 360
>gi|86148265|ref|ZP_01066561.1| ATP-dependent DNA helicase RecQ [Vibrio sp. MED222]
gi|85833961|gb|EAQ52123.1| ATP-dependent DNA helicase RecQ [Vibrio sp. MED222]
Length = 612
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 202/348 (58%), Gaps = 12/348 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY SFRDGQ E I + ++ K +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 20 ILQDVFGYQSFRDGQQEVIDLAVEGKDSLVIMPTGGGKSLCYQIPALVRDGLTLVISPLI 79
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++SS +++ + G +K+++ SPER L DF+
Sbjct: 80 SLMKDQVDQLKANGVAAECINSSMPRDQLLSVFNRMNSGQLKMVYASPERVLMRDFIERL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++ VDEAHC+S+W H+FRP Y L L+ +A+TATA T +D+
Sbjct: 140 QGLPL-SMIAVDEAHCISQWGHDFRPEYALL--GQLKQYFPHVPYMALTATADDATRKDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L++ + + R N++ ++ E+ V +V + + K + G
Sbjct: 197 ISRLQLVEPHTYLGSFDRPNIRYNLV--------EKHKPVSQVVRYLETQKGNCGIIYCG 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N I YH+G+ +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 249 SRKKVEMVTEKLCNNGIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
V V+H+ +P ++E Y QE GRAGRDG + + D LR ++
Sbjct: 309 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADMGWLRRML 356
>gi|423278476|ref|ZP_17257390.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 610]
gi|404586486|gb|EKA91059.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 610]
Length = 601
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 199/335 (59%), Gaps = 12/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I+ ++ K+ ++++PTG GKS+CYQ+PA+++ G +V+ PL++
Sbjct: 5 LKTYFGYDSFRPLQEEIIRNLMSKRDALVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIF 310
LM DQ+ L I G L+SS E A R G +K+L++SPE+ L+ AD+L
Sbjct: 65 LMKDQVESLCANGIPAGALNSSNDESENANLRRACISGKLKLLYISPEKLLSEADYL--- 121
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL VDEAHC+S+W H+FRP Y R+ LR + ++A+TATA T D+
Sbjct: 122 LRDMTISLFAVDEAHCISQWGHDFRPEYARM--GFLRTQFPNIPMIALTATADKITREDI 179
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL LSV G + + A VD + S Y + S
Sbjct: 180 VRQLQLKQPEIFISSFDRPNLSLSVK-RGYQPKEKSKAIVDFIARHRGESGIIYCMSRS- 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L + I YH+G+ A+ R Q+ F +++I VV AT+AFGMG+DK +
Sbjct: 238 ---KTETVAQMLQKHGIRCGVYHAGLSARQRDEAQDDFINDRIEVVCATIAFGMGIDKSN 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY+LP+S+E + QEIGRAGRDG S LF
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILF 329
>gi|425470694|ref|ZP_18849554.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
gi|389883511|emb|CCI36062.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
Length = 701
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 212/366 (57%), Gaps = 35/366 (9%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ ++L + L+ +GYD FR Q + I+ L+ + ++++PTG GKSLC+Q+PA+I G+
Sbjct: 2 AAIDSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGV 61
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ ++V E LI G IK+L+V+PER L
Sbjct: 62 TVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLL 121
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL++ ++ + VDEAHCVS+W H+FRP Y +++ +R R ILA+T
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQ--VRQRFPSVPILALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN-------ERSAYVDE 412
ATAT D+ IQ+ LRD S+ ++ NR N + S +
Sbjct: 180 ATATQQVREDI-----------IQQLGLRDT---SIHIASFNRPNLYYEVQPKTSKSYQQ 225
Query: 413 VFSFHRSSKHYYILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
++ + + K I+ IS K D ++ L + I+ YH+G+ ++RS+ Q F +
Sbjct: 226 LYQYIKGQKGSGIVYCISRK--TVDQVAEQLQKDGINALPYHAGMEDRERSQNQTRFIRD 283
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD---- 527
++++VAT+AFGMG++K DV V+HY LP +LE Y QE GRAGRDG + C LF
Sbjct: 284 DVQIMVATIAFGMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADA 343
Query: 528 -DITYF 532
I YF
Sbjct: 344 RKIEYF 349
>gi|425444700|ref|ZP_18824746.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|425454418|ref|ZP_18834158.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
gi|389735511|emb|CCI01005.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|389804921|emb|CCI15689.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
Length = 703
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 208/355 (58%), Gaps = 30/355 (8%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ ++L ++L+ +GYD FR Q + I+ L+ + ++++PTG GKSLC+Q+PA+I G+
Sbjct: 2 AAIDSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGV 61
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ ++V E LI G IK+L+V+PER L
Sbjct: 62 TVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLL 121
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL++ ++ + VDEAHCVS+W H+FRP Y +++ +R R ILA+T
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQ--VRQRFPSVPILALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN-------ERSAYVDE 412
ATAT D+ IQ+ LRD S+ ++ NR N + S +
Sbjct: 180 ATATQQVREDI-----------IQQLGLRDT---SIHIASFNRPNLYYEVQPKTSKSYQQ 225
Query: 413 VFSFHRSSKHYYILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
++ + + K I+ IS K D ++ L + I YH+G+ ++RS Q F +
Sbjct: 226 LYQYIKGQKGSGIVYCISRK--TVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRD 283
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++++VAT+AFGMG++K DV V+HY LP +LE Y QE GRAGRDG + C LF
Sbjct: 284 DVQIMVATIAFGMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFF 338
>gi|311068600|ref|YP_003973523.1| ATP-dependent nucleic acid helicase [Bacillus atrophaeus 1942]
gi|419820760|ref|ZP_14344369.1| putative ATP-dependent nucleic acid helicase [Bacillus atrophaeus
C89]
gi|310869117|gb|ADP32592.1| putative ATP-dependent nucleic acid helicase [Bacillus atrophaeus
1942]
gi|388475234|gb|EIM11948.1| putative ATP-dependent nucleic acid helicase [Bacillus atrophaeus
C89]
Length = 592
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 201/356 (56%), Gaps = 12/356 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ R GQ +AI+ V + KK+T ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKLRPGQEQAIRSVTEAKKNTACIMPTGGGKSICYQIPALLFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +++S+Q +++ + ++ G+ + +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGIAAAYINSTQSNQDIQSRLTALKNGSYHLFYITPERLTSPEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ + + LV +DEAHC+S+W H+FRPSY + L R I+A+TATAT D
Sbjct: 128 LQSIT-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFRELKEKPVIMALTATATPEVHED 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + RDNL V+ G N+ +++E +R+ I+ +
Sbjct: 186 ICKQLHIEKENTVYTGFSRDNLTFKVA-KGENKDR----FIEEYL--NRNKLEAGIIYTA 238
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ E D I L I+ YH G+P + R QE F +++I+V+VAT AFGMG+DK
Sbjct: 239 TRK-EADRICEKLKRQHINAGRYHGGLPDEVRKEQQEQFLNDQIQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
++ V+HY +P+ +E Y QE GRAGRDG S C L R L+ DE
Sbjct: 298 NIRFVLHYQIPKDMESYYQEAGRAGRDGLDSECILLFSPQDIMVQRFLIEQSASDE 353
>gi|332686743|ref|YP_004456517.1| ATP-dependent DNA helicase RecQ [Melissococcus plutonius ATCC
35311]
gi|332370752|dbj|BAK21708.1| ATP-dependent DNA helicase RecQ [Melissococcus plutonius ATCC
35311]
Length = 590
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 136/394 (34%), Positives = 221/394 (56%), Gaps = 27/394 (6%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+LL+ V+GY+ FR GQ E I VL++++ + ++PTG GKS+CYQ+PA++LP LTLV+ PL
Sbjct: 6 QLLKKVFGYEQFRPGQQELINCVLNRQNVLGIMPTGGGKSICYQLPALMLPNLTLVISPL 65
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I F++S+ +E+ I+L +K+L+++PER + DF +
Sbjct: 66 ISLMKDQVDALNLLGIPATFINSTISIQEMNHRIQLAVDKKVKLLYIAPERLESYDFQQL 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
I ++ VDEAHC+S+W ++FRPSY+R+ A ++ I+A+TATAT D
Sbjct: 126 LLHVP-IDVLAVDEAHCISQWGYDFRPSYLRV-AEIIHQFKQQPTIIALTATATPQVAED 183
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L IP+ N ++ LR+NL V R R ++ E +++ I+ ++
Sbjct: 184 ILKKLYIPIDNQVKTGFLRENLSFQVI-----RDQNRDLFLLEYLKLNQAQAG--IIYVN 236
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ E + I L I+V YH G+ ++R+ QE F ++++V+ AT AFGMG++K
Sbjct: 237 TRK-EAERIYLLLKSKKIAVGIYHGGMSEQERNDNQEKFLFDQLQVIAATNAFGMGINKS 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDG------------RLSYCHLFLDDITY---FRL 534
+V VIH P ++E Y QE GRAGRDG L H F++ +T ++
Sbjct: 296 NVRFVIHAQTPGNIESYYQEAGRAGRDGLPGDAILFYTPQDLQIHHYFIEQMTCTDDYKQ 355
Query: 535 RSLMYSDGVDEYAINKFLCQVFT-NGMNSHGKLC 567
+ + +YA + Q F N HG C
Sbjct: 356 QQYTKLKEISQYANTQVCLQQFILNYFGDHGLEC 389
>gi|148978460|ref|ZP_01814934.1| ATP-dependent DNA helicase RecQ [Vibrionales bacterium SWAT-3]
gi|145962367|gb|EDK27647.1| ATP-dependent DNA helicase RecQ [Vibrionales bacterium SWAT-3]
Length = 612
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 201/348 (57%), Gaps = 12/348 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY SFRDGQ E I + + + +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 20 ILEDVFGYQSFRDGQQEVIDLAVQGRDSLVIMPTGGGKSLCYQIPALVREGLTLVISPLI 79
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++SS +++ + G +K+++VSPER L DF+
Sbjct: 80 SLMKDQVDQLKANGVAAECINSSMPRDQLLSVFNRMNSGQLKMVYVSPERVLMRDFIERL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++ VDEAHC+S+W H+FRP Y L L+ +A+TATA T +D+
Sbjct: 140 QGLPL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKQYFPHVPYMALTATADDATRKDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L++ + + R N++ ++ E+ V +V + + K + G
Sbjct: 197 VSRLQLVDPHTYLGSFDRPNIRYNLV--------EKHKPVSQVVRYLETQKGNCGIIYCG 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N I YH+G+ +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 249 SRKKVEMVTEKLCNNGIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
V V+H+ +P ++E Y QE GRAGRDG + + D LR ++
Sbjct: 309 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADMGWLRRML 356
>gi|262404934|ref|ZP_06081486.1| ATP-dependent DNA helicase RecQ [Vibrio sp. RC586]
gi|262348773|gb|EEY97914.1| ATP-dependent DNA helicase RecQ [Vibrio sp. RC586]
Length = 620
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 202/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVREGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLTREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNIPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|15895945|ref|NP_349294.1| DNA helicase [Clostridium acetobutylicum ATCC 824]
gi|337737898|ref|YP_004637345.1| DNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384459408|ref|YP_005671828.1| RecQ protein, superfamily II DNA helicase [Clostridium
acetobutylicum EA 2018]
gi|15025719|gb|AAK80634.1|AE007766_7 RecQ protein, superfamily II DNA helicase [Clostridium
acetobutylicum ATCC 824]
gi|325510097|gb|ADZ21733.1| RecQ protein, superfamily II DNA helicase [Clostridium
acetobutylicum EA 2018]
gi|336293149|gb|AEI34283.1| DNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 714
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 199/343 (58%), Gaps = 21/343 (6%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D+N+ +L+ +GY SFR GQ I+ +LD T ++PTG GKS+CYQ+PA+ + GLT+
Sbjct: 2 DKNIFNILKKYFGYSSFRRGQENIIQSILDGNDTFAIMPTGGGKSICYQVPALYMKGLTI 61
Query: 246 VVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ+ L ++ +++S+ +E + + G +K+L+V+PER L
Sbjct: 62 VITPLISLMKDQVDTLRENGVNASYINSTLSSKETNDILMSALSGHLKILYVAPER-LEQ 120
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
D+ IS+V +DEAHCVS+W H+FR SY R+ + + A TATAT
Sbjct: 121 DYFRNAIKDLTISMVAIDEAHCVSQWGHDFRVSYKRI-VPFINIFDKRPIVAAFTATATD 179
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
+D+++ LE+ N RDNL S+ + N + ++ + S H+
Sbjct: 180 EVKKDIINLLELKEPNCFITGFDRDNLFFSIVKNEN-----KFDFITKYLSKHK------ 228
Query: 425 ILQISGKHF-----ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
++SG + E D + + L SV YH+G+ K+RS Q+LF ++ ++++AT
Sbjct: 229 --ELSGIIYAATRKEVDSLHQKLISQGYSVGKYHAGMGDKERSESQDLFLYDETKLMIAT 286
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
AFGMG+DK +V VIHY++P++LE Y QE GRAGRDG S C
Sbjct: 287 NAFGMGIDKSNVRFVIHYNMPKNLESYYQEAGRAGRDGEKSEC 329
>gi|422302785|ref|ZP_16390144.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
gi|389787941|emb|CCI16794.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
Length = 703
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 208/355 (58%), Gaps = 30/355 (8%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ ++L + L+ +GYD FR Q + I+ L+ + ++++PTG GKSLC+Q+PA+I G+
Sbjct: 2 AAIDSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGV 61
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ ++V E LI G IK+L+V+PER L
Sbjct: 62 TVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLL 121
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL++ ++ + VDEAHCVS+W H+FRP Y +++ +R R ILA+T
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQ--VRQRFPSVPILALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN-------ERSAYVDE 412
ATAT D+ IQ+ LRD S+ ++ NR N + S +
Sbjct: 180 ATATQQVREDI-----------IQQLGLRDT---SIHIASFNRPNLYYEVQPKTSKSYQQ 225
Query: 413 VFSFHRSSKHYYILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
++ + + K I+ IS K D ++ L + I+ YH+G+ ++RS Q F +
Sbjct: 226 LYQYIKGQKGAGIVYCISRK--TVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRD 283
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++++VAT+AFGMG++K DV VIHY LP +LE Y QE GRAGRDG + C LF
Sbjct: 284 DVQIMVATIAFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFF 338
>gi|429767396|ref|ZP_19299595.1| ATP-dependent DNA helicase RecQ [Clostridium celatum DSM 1785]
gi|429181004|gb|EKY22199.1| ATP-dependent DNA helicase RecQ [Clostridium celatum DSM 1785]
Length = 583
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 206/344 (59%), Gaps = 17/344 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ YGY FR GQ E I+ +L+ + ++PTG GKS+CYQIPA++L G+T+V+ PL+
Sbjct: 7 LLKKYYGYTCFRQGQEEIIREILNGNDVLTIMPTGGGKSICYQIPALLLDGVTIVISPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ ++ + I +++SS E+ + IK+L+V+PER + F+ +
Sbjct: 67 SLMKDQVDNINNLGIKSAYINSSLSNIEIDNILNEAAKNEIKILYVAPERLESYAFMELI 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRL-RA-SLLRARLNVECILAMTATATTTTLR 368
+ + IS++ +DEAHCVS+W H+FR SY ++ RA SLLR R + A TATAT
Sbjct: 127 ASIN-ISMIAIDEAHCVSQWGHDFRSSYKKISRAISLLRNR---PIVTAFTATATKEVRE 182
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D+++ LE+ + R NL++ + G ++ Y++E + I+
Sbjct: 183 DIINLLELNSPKVFISGFDRPNLKIVIE-KGVIKKRYILDYINE------NKDQCGIIYC 235
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
S K E + + +L I K YH+G+ ++R + QE F +++ +++AT+AFGMG+DK
Sbjct: 236 STKK-EVEALHEFLESKGIESKKYHAGLSGEERKQAQEDFIYDRVNIIIATIAFGMGIDK 294
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DIT 530
+V VIHY++P+++E Y QEIGRAGRDG S C + D+T
Sbjct: 295 PNVRYVIHYNMPKNIEGYYQEIGRAGRDGEKSECIMLFSPGDVT 338
>gi|425466065|ref|ZP_18845368.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
gi|389831578|emb|CCI25550.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
Length = 703
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 140/366 (38%), Positives = 211/366 (57%), Gaps = 35/366 (9%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ ++L + L+ +GYD FR Q + I+ L+ + ++++PTG GKSLC+Q+PA+I G+
Sbjct: 2 AAIDSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGV 61
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ ++V E LI G IK+L+V+PER L
Sbjct: 62 TVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLL 121
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL++ ++ + VDEAHCVS+W H+FRP Y +++ +R R ILA+T
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQ--VRQRFPSVPILALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN-------ERSAYVDE 412
ATAT D+ IQ+ LRD S+ ++ NR N + S +
Sbjct: 180 ATATQQVREDI-----------IQQLGLRDT---SIHIASFNRPNLYYEVQPKTSKSYQQ 225
Query: 413 VFSFHRSSKHYYILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
++ + + K I+ IS K D ++ L + I+ YH+G+ ++RS Q F +
Sbjct: 226 LYQYIKGQKGAGIVYCISRK--TVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRD 283
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD---- 527
++++VAT+AFGMG++K DV VIHY LP +LE Y QE GRAGRDG + C LF
Sbjct: 284 DVQIMVATIAFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADA 343
Query: 528 -DITYF 532
I YF
Sbjct: 344 RKIEYF 349
>gi|424810032|ref|ZP_18235399.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus SX-4]
gi|342322670|gb|EGU18458.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus SX-4]
Length = 611
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 202/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 18 RVLHEVFGYQQFRVGQQEVIEAALQGRDSLVIMPTGGGKSLCYQIPALVREGVTLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTFAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 138 LSNLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNIPVMALTATADDATRHD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 195 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYF 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 352
>gi|415885925|ref|ZP_11547748.1| ATP-dependent DNA helicase RecQ [Bacillus methanolicus MGA3]
gi|387588578|gb|EIJ80899.1| ATP-dependent DNA helicase RecQ [Bacillus methanolicus MGA3]
Length = 723
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 201/337 (59%), Gaps = 11/337 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E +LL+ +G+ SFR GQ +AI+ VL+ K+++ V+PTG GKS+CYQIP++++PG T+V
Sbjct: 3 EKAQQLLQSYFGFPSFRKGQEQAIRFVLEGKNSLCVMPTGGGKSICYQIPSLVMPGTTIV 62
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL++LM DQ+ L + I +++SS E E + + G K+L+++PER + +
Sbjct: 63 VSPLISLMKDQVDALLQLGISATYINSSISLSEANERMMEAKQGRYKLLYIAPERLESRE 122
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F + I V VDEAHC+S+W H+FRPSY +R ++ +LA+TATAT
Sbjct: 123 FKENLKSME-IPFVAVDEAHCISQWGHDFRPSYRHIR-RMVNNLKKKPIVLALTATATPM 180
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D+ +L+I N + R+NL SV + G + R ++ + +++K I
Sbjct: 181 VREDICKSLDIDEKNTVMTGFERENLSFSV-IKGQD----RLLFLKDFLK--KNNKESGI 233
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ + + L R +N ++V YH+G+ DR R Q+ F + K V+VAT AFGMG
Sbjct: 234 IYAATRKMVDQLYERLKKEN-MNVGRYHAGMSDLDRMREQDQFLAEKTTVMVATSAFGMG 292
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+DK ++ VIH+ LP+++E Y QE GRAGRDG S C
Sbjct: 293 IDKSNIRYVIHFQLPKNMESYYQEAGRAGRDGLASEC 329
>gi|338211691|ref|YP_004655744.1| ATP-dependent DNA helicase RecQ [Runella slithyformis DSM 19594]
gi|336305510|gb|AEI48612.1| ATP-dependent DNA helicase RecQ [Runella slithyformis DSM 19594]
Length = 715
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 209/351 (59%), Gaps = 12/351 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L+ +GY++FR Q E I + M+++PTG GKS+CYQ+PA++ G+TLV+ PL
Sbjct: 7 RILKQYFGYETFRPLQAEIIDWIAAGNDCMVLMPTGGGKSVCYQVPALMKEGITLVISPL 66
Query: 251 VALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
+ALM DQ++ L I FL+S+Q E + G +K+L+++PE+ A L
Sbjct: 67 IALMKDQVQALRANGIEAAFLNSTQSASEQYAIEKQCHSGELKLLYIAPEKLFAAGSLD- 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F + I+L VDE+HCVS W H+FRP Y +L +L+A ++A+TATA T RD
Sbjct: 126 FVRSLNINLFAVDESHCVSVWGHDFRPEYTQLH--ILKAAFPHVPMVALTATADRVTRRD 183
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
V+ L IP + + + + R NL L+V L G NR V E F ++ I ++
Sbjct: 184 VLKQLGIPEARVFEASFDRPNLSLNV-LPGRNRIK-----VIEQFINDHPNQSGIIYCLA 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K T+ I++ L I+ + YH+ +P ++RS++Q+ F + I+++VAT+AFGMG+DK
Sbjct: 238 RK--TTEDIAQKLRARGINARHYHAKLPPEERSKVQDDFLRDDIQIMVATIAFGMGIDKS 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYS 540
+V ++HY++P ++E + QEIGRAGRDG S LF + R ++ S
Sbjct: 296 NVRWIMHYNMPGNVESFYQEIGRAGRDGLKSDTMLFYSFADWIMRRDMIES 346
>gi|258625868|ref|ZP_05720743.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus VM603]
gi|258581832|gb|EEW06706.1| ATP-dependent DNA helicase RecQ [Vibrio mimicus VM603]
Length = 620
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 201/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I L + +++++PTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIDAALQGRDSLVIMPTGGGKSLCYQIPALVREGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSNLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNIPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|417951017|ref|ZP_12594128.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus ATCC 33789]
gi|342805457|gb|EGU40720.1| ATP-dependent DNA helicase RecQ [Vibrio splendidus ATCC 33789]
Length = 612
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 123/348 (35%), Positives = 201/348 (57%), Gaps = 12/348 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY SFRDGQ E I + + + +++++PTG GKSLCYQIPA++ GLTLV+ PL+
Sbjct: 20 ILEDVFGYQSFRDGQQEVIDLAVQGRDSLVIMPTGGGKSLCYQIPALVREGLTLVISPLI 79
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++SS +++ + G +K+++VSPER L DF+
Sbjct: 80 SLMKDQVDQLKANGVAAECINSSMPRDQLLSVFNRMNSGQLKMVYVSPERVLMRDFIERL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S++ VDEAHC+S+W H+FRP Y L L+ +A+TATA T +D+
Sbjct: 140 QGLPL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKQYFPHVPYMALTATADDATRKDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L++ + + R N++ ++ E+ V +V + + K + G
Sbjct: 197 VSRLQLVDPHTYLGSFDRPNIRYNLV--------EKHKPVSQVVRYLETQKGNCGIIYCG 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N I YH+G+ +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 249 SRKKVEMVTEKLCNNGIRAAGYHAGMDTDERAYVQEAFQRDDIQIVVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
V V+H+ +P ++E Y QE GRAGRDG + + D LR ++
Sbjct: 309 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLFDPADMGWLRRML 356
>gi|89894521|ref|YP_518008.1| hypothetical protein DSY1775 [Desulfitobacterium hafniense Y51]
gi|89333969|dbj|BAE83564.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 739
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 195/336 (58%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GY FR GQ + I +L T+ ++PTGAGKSL YQIPA++ G+TLV+ PL+
Sbjct: 19 LLKRYFGYSQFRKGQDKVIHSLLQSSDTVAIMPTGAGKSLSYQIPALLFDGVTLVISPLI 78
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + F++SS +E E I + G K+L+++PER FL++
Sbjct: 79 SLMKDQVDSLHEAGVPATFINSSLSMQEAWERINKARQGRYKLLYIAPERLEAESFLTLL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + IS V VDEAHCVS+W H+FRPSY ++ A + + I A TATAT D+
Sbjct: 139 ESLT-ISFVAVDEAHCVSQWGHDFRPSYRKIGA-FVESLPRRPIIGAFTATATQEVREDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L++ + R NL+LS +L G N++ S Y + HRS + +
Sbjct: 197 VSLLKLESPQVFVTGFDRPNLKLS-TLKGENKKVFISTYCLQ----HRSESG---IIYAA 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + YL + V YH+G+ DR + QE F +K ++VAT AFGMG+DK +
Sbjct: 249 TRKEVDQLQTYLKGKGLLVGKYHAGMSDLDRQKAQEAFLYDKTPLMVATNAFGMGIDKSN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHY++P+++E Y QE GRAGRDG + C L
Sbjct: 309 VRFVIHYNMPKNMEAYYQEAGRAGRDGEPAECILLF 344
>gi|399927001|ref|ZP_10784359.1| ATP-dependent DNA helicase RecQ1 [Myroides injenensis M09-0166]
Length = 731
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 136/372 (36%), Positives = 208/372 (55%), Gaps = 16/372 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L + L+ +G+ F+ Q + +K ++ +T +++PTG GKSLCYQ+PA++L G +VV
Sbjct: 7 DLYKELKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLEGTAIVV 66
Query: 248 CPLVALM---IDQLRHLPPVIHG--GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
PL+ALM +D +R L HG L+SS E+ + I+ G K+L+V+PE
Sbjct: 67 SPLIALMKNQVDAIRSLSTE-HGIAHVLNSSLTKSEINQVKEDIKSGVTKLLYVAPESLT 125
Query: 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
+++S L S V +DEAHC+SEW H+FRP Y LR +++R ++ I +TATA
Sbjct: 126 KEEYVSFLKEVKL-SFVAIDEAHCISEWGHDFRPEYRNLR-NIIRQLGDIPMI-GLTATA 182
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
T D++ LEIP +N+ + + R NL + N +++ ++ + + K
Sbjct: 183 TPKVQEDILKNLEIPDANVFKASFNRPNLFYEIRPKTKNIESDIIRFIKQ-----NAGKS 237
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
I +S K E I+ L N IS YH+G+ AK R++ Q++F + VVVAT+AF
Sbjct: 238 GVIYCLSRKKVEE--IANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAF 295
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
GMG+DK DV VIH+ +P+SLE Y QE GRAGRDG +C + +L M
Sbjct: 296 GMGIDKPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMAGKP 355
Query: 543 VDEYAINKFLCQ 554
+ E I L Q
Sbjct: 356 IAEQEIGFALLQ 367
>gi|419835117|ref|ZP_14358565.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-46B1]
gi|421341784|ref|ZP_15792193.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-43B1]
gi|421353007|ref|ZP_15803345.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-45]
gi|423733466|ref|ZP_17706697.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-41B1]
gi|424007762|ref|ZP_17750719.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-44C1]
gi|395946961|gb|EJH57619.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-43B1]
gi|395955466|gb|EJH66062.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HE-45]
gi|408632325|gb|EKL04786.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-41B1]
gi|408859258|gb|EKL98919.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-46B1]
gi|408867878|gb|EKM07231.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae HC-44C1]
Length = 611
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 201/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 18 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L +F+
Sbjct: 78 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTTEFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 138 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + +
Sbjct: 195 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQHGQCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 352
>gi|161486585|ref|NP_935980.2| ATP-dependent DNA helicase RecQ [Vibrio vulnificus YJ016]
Length = 611
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 202/345 (58%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY +FR+GQ I+ ++ K +++++PTG GKSLCYQIPA++ PG+TLV+ PL+
Sbjct: 19 VLSQVFGYQTFREGQQSVIEAAVEGKDSLVIMPTGGGKSLCYQIPALVRPGITLVISPLI 78
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++S+ + + + G +K+++VSPER L DF+
Sbjct: 79 SLMKDQVDQLKANGVAAECVNSTLSRDALLSVYNRMHAGQLKLVYVSPERVLMRDFIERL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L +++ VDEAHC+S+W H+FRP Y L L+ +A+TATA T +D+
Sbjct: 139 ENLPL-AMIAVDEAHCISQWGHDFRPEYAAL--GQLKHHFPHVPFMALTATADDATRKDI 195
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L + ++ + R N++ + E+ V +V + S K + G
Sbjct: 196 LSRLHLNEPHVYLGSFDRPNIRYDLV--------EKHKPVSQVIRYLESQKGNCGIIYCG 247
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 248 SRKKVEMLTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPN 307
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V V+H+ +P ++E Y QE GRAGRDG + + D DIT+ R
Sbjct: 308 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADITWLR 352
>gi|346325737|gb|EGX95334.1| ATP-dependent DNA helicase recQ [Cordyceps militaris CM01]
Length = 753
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 158/517 (30%), Positives = 258/517 (49%), Gaps = 48/517 (9%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP--------- 241
+LL +GY +FR Q AI+ +L +T+ V PTGAGKSLCYQIPA+
Sbjct: 87 KLLTETFGYKAFRHEQAGAIQRLLAGDNTLTVFPTGAGKSLCYQIPAIAFEQLDLKSGSK 146
Query: 242 -----GLTLVVCPLVALMIDQL-----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAI 291
G+++VV PL+ALM DQ+ R+LP + S++ E++ E ++ G +
Sbjct: 147 APGEHGVSIVVSPLIALMKDQVDALRRRNLP----ADCIDSTKTWEQLQEIYAGLRQGKL 202
Query: 292 KVLFVSPERFLNADFL-SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARL 350
++L+ +PER N F+ ++ + L+ VDEAHCVSEW H+FRP Y L+ + +
Sbjct: 203 RLLYCAPERLNNEGFVETMRHVRGGVRLLAVDEAHCVSEWGHSFRPEY--LKVARFAKEI 260
Query: 351 NVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV 410
N E ++ +TATAT ++D+ I + + R NL L V + + ++ +
Sbjct: 261 NAERVVCLTATATPKVIKDICDTFAIQPEGVFRTTLYRPNLNLHVKAA--KTKQDKYPLI 318
Query: 411 DEVFSFHRSSKHYYI-LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFC 469
+ + H Y+ LQ DL +++H+G+ + +++IQ+ F
Sbjct: 319 FQFLNAHPGPTLVYVTLQQQALSMAADLRK-----EGYDAEAFHAGLNVEVKTKIQDRFL 373
Query: 470 SNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529
+NK+R+VVAT+AFGMG+DK D+ +IH+ L ++EEY Q+IGRAGRDG+ S C ++
Sbjct: 374 ANKVRIVVATIAFGMGIDKPDIRNIIHFDLSSTVEEYCQQIGRAGRDGKTSNCMYYICPD 433
Query: 530 TYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKES---ASRKFDIKEEVML 586
++ + D ++ FL +F N L K S SR+FDI+ +
Sbjct: 434 DWYIRENFARGDLPSPQSLKAFLTDIFRQ-ENVSIPLGGNFKTSHYVQSREFDIRTNTLA 492
Query: 587 TLLTCLELGEIQYLQLLPELK----VTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQ 642
T+ LEL + PE V + F + + + + A +K KQ
Sbjct: 493 TVYAALELQFGLIRAITPEYSEYKFVPTNVYFGRMSNEKAPESQAIYAGAVK----KQKF 548
Query: 643 YVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELK 679
+ D+ ++ + G D+ +L +L G I ELK
Sbjct: 549 HYVDVNSIVSKTGIRRADIVRKLTDLNDSGVI--ELK 583
>gi|27364385|ref|NP_759913.1| ATP-dependent DNA helicase RecQ [Vibrio vulnificus CMCP6]
gi|27360504|gb|AAO09440.1| ATP-dependent DNA helicase RecQ [Vibrio vulnificus CMCP6]
Length = 611
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 202/345 (58%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY +FR+GQ I+ ++ K +++++PTG GKSLCYQIPA++ PG+TLV+ PL+
Sbjct: 19 VLSQVFGYQTFREGQQSVIEAAVEGKDSLVIMPTGGGKSLCYQIPALVRPGITLVISPLI 78
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++S+ + + + G +K+++VSPER L DF+
Sbjct: 79 SLMKDQVDQLKANGVAAECVNSTLSRDALLSVYNRMHAGQLKLVYVSPERVLMRDFIERL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L +++ VDEAHC+S+W H+FRP Y L L+ +A+TATA T +D+
Sbjct: 139 ENLPL-AMIAVDEAHCISQWGHDFRPEYAAL--GQLKHHFPHVPFMALTATADDATRKDI 195
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L + ++ + R N++ + E+ V +V + S K + G
Sbjct: 196 LSRLHLNEPHVYLGSFDRPNIRYDLV--------EKHKPVSQVIRYLESQKGNCGIIYCG 247
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 248 SRKKVEMLTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPN 307
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V V+H+ +P ++E Y QE GRAGRDG + + D DIT+ R
Sbjct: 308 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADITWLR 352
>gi|410611522|ref|ZP_11322620.1| ATP-dependent DNA helicase RecQ [Glaciecola psychrophila 170]
gi|410168940|dbj|GAC36509.1| ATP-dependent DNA helicase RecQ [Glaciecola psychrophila 170]
Length = 605
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 200/351 (56%), Gaps = 17/351 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GYD FRDGQ + I V+ +K ++++PTG GKSLCYQIPAM+LPGLT+VV PL
Sbjct: 17 QVLKQTFGYDRFRDGQAQVITQVMQQKDVLVLMPTGGGKSLCYQIPAMLLPGLTIVVSPL 76
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L ++ +++S+ +++ + +Q ++++V+PER + DF+
Sbjct: 77 ISLMKDQVDALLTYGVNAAYINSTLSSQDMFNIYKGMQDDKYQLIYVAPERLMQLDFIQR 136
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ ISL+ VDEAHCVS W H+FR Y L L+ I+ +TATA T D
Sbjct: 137 LQGLT-ISLIAVDEAHCVSHWGHDFRKDYRLL--GQLKGTFPHIPIMGLTATADLATRAD 193
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY--VDEVFSFHRSSKHYYILQ 427
+ L + + + + R N+ R N+ + Y ++ +F + I+
Sbjct: 194 ITQQLNLQQPFIFKGSFDRPNI----------RYNQITKYKATEQAIAFIKQQDGSGIIY 243
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + + D +S L I+ YH+G+ R +IQ F +KI ++VATVAFGMG+D
Sbjct: 244 CNSRR-KVDDLSIALAKQGINCAGYHAGLEGAIRDKIQRDFIQDKIDIIVATVAFGMGID 302
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
K +V V+H+ LP S+E Y QEIGRAGRDG + L D+ R+R +
Sbjct: 303 KSNVRFVLHFDLPRSIESYYQEIGRAGRDGMPAEALLLFDEKDAARIRQWI 353
>gi|85818249|gb|EAQ39409.1| ATP-dependent DNA helicase RecQ [Dokdonia donghaensis MED134]
Length = 701
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 130/375 (34%), Positives = 211/375 (56%), Gaps = 28/375 (7%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
+ ++L +LL+ +GYD FR Q E I+ + + + ++++PTG GKS+C+Q+PA+ L G+
Sbjct: 8 TQQDLHKLLKTHFGYDGFRPNQQEIIESICNGQDALVIMPTGGGKSMCFQLPALALDGVA 67
Query: 245 LVVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
LV+ PL+ALM DQ+ L I + +S+Q PEE + + +Q A+ +++V+PE
Sbjct: 68 LVISPLIALMKDQVDALRANGIKAAYYNSTQPPEETQKVLSDLQHNALDLIYVAPESL-- 125
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
L +T ISL+ +DEAHC+S W H+FRP+Y +L L+ R ++A+TATA
Sbjct: 126 -QLLDPVLSTIKISLIAIDEAHCISSWGHDFRPAYTQL--GYLKRRYPETPLVALTATAD 182
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE-------VFSF 416
+T D+ L IP + + R NL L V G R + ++++ ++
Sbjct: 183 RSTQDDIAQQLSIPQAKKYISSFDRPNLYLDVR-PGQKRNEQILDFLEDHPFESGIIYCL 241
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
R S T+ ++ L N + +YH+G+ A+ RS++QE F ++ ++
Sbjct: 242 SRKS--------------TENLAAKLKSNGHNAAAYHAGMSAEQRSKVQEDFINDTTPII 287
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
AT+AFGMG+DK +V VIHY++P++LE Y QEIGRAGRDG S+ LF +LR
Sbjct: 288 CATIAFGMGIDKSNVRWVIHYNMPKNLEGYYQEIGRAGRDGLPSHTVLFYSYADTMQLRQ 347
Query: 537 LMYSDGVDEYAINKF 551
+ +Y + K
Sbjct: 348 FIDGAKNADYQMAKL 362
>gi|381210883|ref|ZP_09917954.1| ATP-dependent DNA helicase [Lentibacillus sp. Grbi]
Length = 714
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 228/431 (52%), Gaps = 32/431 (7%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N ++L+ +GYD+FR GQ + I + + ++T+ V+PTG GKSLCYQIP M + G+ +++
Sbjct: 3 NAEQMLQTYFGYDTFRAGQKQTIDSITNGRNTLAVMPTGGGKSLCYQIPGMTMDGVAIII 62
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L + I +++SS E +R I+ G+ K ++V+PERF ++ F
Sbjct: 63 SPLISLMKDQVDALQALGIPATYINSSLTAAEQQSRLRDIEAGSCKFVYVAPERFESSMF 122
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+S I+LV DEAHC+S+W H+FRPSY + + L+ ++ +A+TATAT
Sbjct: 123 ISAIRRIR-IALVAFDEAHCISQWGHDFRPSYRSIIPN-LKQLPDIPVTVALTATATEEV 180
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
+ D+ S L I N+I+ R+NL V + +++ Y+ SF + + +
Sbjct: 181 MADIQSLLHINNQNVIKTGFERENLSFHVV-----KGKDKATYIR---SFMKEHQDESGI 232
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+ + D + L YH+G+ ++ Q F ++ V++AT AFGMG+
Sbjct: 233 IYTATRKQADTLHEQLTKRGYPAAKYHAGLTKGEKKHAQASFIHDEKAVMIATNAFGMGI 292
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK +V +IHY++P ++E Y QE GRAGRDG S C L + L+ +DE+
Sbjct: 293 DKSNVRFIIHYAMPMTIEAYYQEAGRAGRDGEHSDCILLFSPQDVQLQKFLIEQSLIDEH 352
Query: 547 A-INKFL-CQVFTNGMNSHGKLCSLVKE------SAS-------------RKFDIKEEVM 585
A N++ Q N ++HG L S + E SA + DI EE
Sbjct: 353 AKQNEYRKLQAMINYCHTHGCLTSYILEYFNDEGSAGSTCGRCSNCLYRQERIDITEEAQ 412
Query: 586 LTLLTCLELGE 596
+ L +GE
Sbjct: 413 MILSCVKRMGE 423
>gi|423283377|ref|ZP_17262261.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 615]
gi|404581095|gb|EKA85801.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 615]
Length = 601
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 200/335 (59%), Gaps = 12/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I ++ KK +++++PTG GKS+CYQ+PA+++ G +V+ PL++
Sbjct: 5 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIF 310
LM DQ+ L I G L+SS E A R G +K+L++SPE+ L+ AD+L
Sbjct: 65 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKLLSEADYL--- 121
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+SL VDEAHC+S+W H+FRP Y R+ LR + ++A+TATA T D+
Sbjct: 122 LRDMTLSLFAVDEAHCISQWGHDFRPEYARM--GFLRNQFPNVPMIALTATADKITREDI 179
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL LSV G + + A VD + S Y + S
Sbjct: 180 VRQLQLRQPQIFISSFDRPNLSLSVK-RGYQPKEKSKAIVDFITRHRGESGIVYCMSRS- 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L + I YH+G+ A+ R+ Q+ F +++I VV AT+AFGMG+DK +
Sbjct: 238 ---KTETVAQMLQKHGIRCGVYHAGLSARQRNETQDDFINDRIEVVCATIAFGMGIDKSN 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY+LP+S+E + QEIGRAGRDG S LF
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILF 329
>gi|166362830|ref|YP_001655103.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
gi|166085203|dbj|BAF99910.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
Length = 703
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 208/355 (58%), Gaps = 30/355 (8%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ ++L + L+ +GYD FR Q + I+ L+ + ++++PTG GKSLC+Q+PA+I G+
Sbjct: 2 AAIDSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGV 61
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ ++V E LI G IK+L+V+PER L
Sbjct: 62 TVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRERESLILQGKIKLLYVAPERLL 121
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL++ ++ + VDEAHCVS+W H+FRP Y +++ +R R ILA+T
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQ--VRQRFPSVPILALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN-------ERSAYVDE 412
ATAT D+ IQ+ LRD S+ ++ NR N + S +
Sbjct: 180 ATATQQVREDI-----------IQQLGLRDT---SIHIASFNRPNLYYEVQPKTSKSYQQ 225
Query: 413 VFSFHRSSKHYYILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
++ + + K I+ IS K D ++ L + I+ YH+G+ ++RS Q F +
Sbjct: 226 LYQYIKGQKGAGIVYCISRK--TVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRD 283
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++++VAT+AFGMG++K DV VIHY LP +LE Y QE GRAGRDG + C LF
Sbjct: 284 DVQIMVATIAFGMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFF 338
>gi|260886800|ref|ZP_05898063.1| ATP-dependent DNA helicase RecQ [Selenomonas sputigena ATCC 35185]
gi|330839391|ref|YP_004413971.1| ATP-dependent DNA helicase RecQ [Selenomonas sputigena ATCC 35185]
gi|260863399|gb|EEX77899.1| ATP-dependent DNA helicase RecQ [Selenomonas sputigena ATCC 35185]
gi|329747155|gb|AEC00512.1| ATP-dependent DNA helicase RecQ [Selenomonas sputigena ATCC 35185]
Length = 593
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 200/345 (57%), Gaps = 14/345 (4%)
Query: 186 DENLGRLLRLV---YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
++N R L+++ +GY SFR Q +K +L+ + T+ ++PTGAGKS+C+Q+PA++LPG
Sbjct: 3 EQNFARALQILQQTFGYKSFRPAQETVVKSLLEGRETVAIMPTGAGKSICFQVPALLLPG 62
Query: 243 LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
+TLV+ PL++LM DQ+ L F++SS E + I GA K+++V+PER
Sbjct: 63 VTLVISPLISLMKDQVDALTEAGAPATFINSSLGQAEARARLSAIARGAYKIVYVAPER- 121
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L DF +S + +DEAHC+S+W H+FRPSY R A + I A TAT
Sbjct: 122 LETDFFQSLLQEQTVSFIAIDEAHCLSQWGHDFRPSY-RAIAPFIECLPKRPLIGAFTAT 180
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
AT D++S L + + R NL V L+G +R+ D + ++ R+ +
Sbjct: 181 ATPRVKDDIISLLALRRPAVHVAGFDRPNLFFGV-LTGVDRK-------DFIANYLRTHR 232
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
+ ETD +SR+L +V+ YH+G+ ++RS+ Q+ F + ++ +VAT A
Sbjct: 233 EEAGIIYCATRKETDALSRFLQQKKFAVRPYHAGLCDEERSKAQDDFLYDNVQAIVATNA 292
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
FGMG+DK +V VIHY++P+++E Y QE GRAGRDG C L
Sbjct: 293 FGMGIDKSNVRFVIHYNMPKNIESYYQEAGRAGRDGEPGECILLF 337
>gi|255261392|ref|ZP_05340734.1| ATP-dependent DNA helicase RecQ [Thalassiobium sp. R2A62]
gi|255103727|gb|EET46401.1| ATP-dependent DNA helicase RecQ [Thalassiobium sp. R2A62]
Length = 678
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 193/333 (57%), Gaps = 24/333 (7%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL V+G+D FR GQ E + V+D ++T+ ++PTG GKSLC+Q+PA++ G+T+V+ PL+
Sbjct: 6 LLSDVFGFDDFRLGQGEIVDAVIDGQNTLAIMPTGGGKSLCFQLPALVRSGVTVVISPLI 65
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+R L V + G L+S PEE ++ G +K+L+++PER ++ L +
Sbjct: 66 ALMRDQVRGLREVGVEAGALTSGNTPEETDAVWEALEAGTLKLLYMAPERLGSSGTLQML 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+S++ VDEAHCVS+W H+FRP Y+R+ LR L+V + A TATA T
Sbjct: 126 RRAG-VSMIAVDEAHCVSQWGHDFRPDYLRI--GELRRTLDVP-LAAFTATADAETQ--- 178
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN------ERSAYVDEVFSFHRSSKHYY 424
+ ++QK L D Q S L G +R N + ++ +F + K
Sbjct: 179 --------AEIVQK--LFDGQQPSTFLRGFDRPNIHLRFEAKDGPRAQILNFAAARKGQS 228
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ G +T+ +S+ L D + YH G+ A+DR ++ F +VVATVAFGM
Sbjct: 229 GIVYCGTRAKTEGLSKALNDAGHTACHYHGGMEAEDRRIVETRFAREDGLIVVATVAFGM 288
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G+DK D+ V H LP+S+E Y QEIGRAGRDG
Sbjct: 289 GVDKPDIRWVAHADLPKSIEAYYQEIGRAGRDG 321
>gi|229521104|ref|ZP_04410525.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae TM 11079-80]
gi|229341989|gb|EEO06990.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae TM 11079-80]
Length = 620
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 201/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L + +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L +F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTTEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQHGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|345429420|ref|YP_004822538.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
gi|301155481|emb|CBW14947.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
Length = 621
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 201/348 (57%), Gaps = 12/348 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR V+GY SFR GQ E I L + ++V+ TG GKSLCYQIPA+ PGLTLV+ PL+
Sbjct: 21 MLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTLVISPLI 80
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I FL+SSQ PE+ + + G +K+L+VSPE+ + F +
Sbjct: 81 SLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQLKLLYVSPEKVMTNSFFQLI 140
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ IS + +DEAHC+S+W H+FRP Y +L L+A I+A+TATA T +D+
Sbjct: 141 SYAQ-ISFIAIDEAHCISQWGHDFRPEYTQLGG--LKAAFPNAPIMALTATADYATRQDI 197
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
++ L++ + + R N++ ++ E+ ++++ F + K +
Sbjct: 198 LTHLKLDHPHKYIGSFDRPNIRYTLE--------EKFKPMEQLTRFVLAQKGKSGIVYCN 249
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ + I+ L + +S +YH+G+ R R+Q+ F + I+VVVAT+AFGMG++K +
Sbjct: 250 SRSKVERIAETLRNKGVSAAAYHAGMETALRERVQQDFQRDNIQVVVATIAFGMGINKSN 309
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
V V H+ LP S+E Y QE GRAGRD + LF + Y L+ ++
Sbjct: 310 VRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYELADYAWLQKIL 357
>gi|183600296|ref|ZP_02961789.1| hypothetical protein PROSTU_03856 [Providencia stuartii ATCC 25827]
gi|188020087|gb|EDU58127.1| ATP-dependent DNA helicase RecQ [Providencia stuartii ATCC 25827]
Length = 608
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/348 (38%), Positives = 207/348 (59%), Gaps = 20/348 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L +GY SFR GQ I+ +LD + ++++PTG GKSLCYQ+PA++ G+TLVV PL+
Sbjct: 16 ILNNTFGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLI 75
Query: 252 ALMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
+LM DQ+ L +HG L+SSQ +E + + L GAIK+L+V+PER L FLS
Sbjct: 76 SLMKDQVDQLR--LHGIKAACLNSSQTAQEQRDVMALCAQGAIKLLYVAPERLLTDYFLS 133
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
++ + ISL+ VDEAHCVS+W H+FRP Y + LR I+A+TATA TT
Sbjct: 134 QLSSWN-ISLLAVDEAHCVSQWGHDFRPEYRAI--GQLRQHFPDVPIMALTATADETTRA 190
Query: 369 DVMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++ L + LIQ + R N++ ++ E+ +D+++ F ++ K +
Sbjct: 191 DIVRLLALH-DPLIQISSFDRPNIRYTLV--------EKYKPLDQLWFFIKAQKGKAGIV 241
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + + L +SV +YH+G+ + R +Q+ F + +++VVATVAFGMG++
Sbjct: 242 YCNSRSKVEETAERLQKRGLSVAAYHAGLDNQQREWVQDAFLKDNLQIVVATVAFGMGIN 301
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
K +V V H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 302 KSNVRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAVLFYDPADMAWLR 349
>gi|153954997|ref|YP_001395762.1| RecQ protein [Clostridium kluyveri DSM 555]
gi|146347855|gb|EDK34391.1| RecQ [Clostridium kluyveri DSM 555]
Length = 719
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 198/340 (58%), Gaps = 11/340 (3%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N +L YGY++F+ Q E I+ +L + T+ ++PTG GKS+CYQIPA++ G+T+V+
Sbjct: 4 NAEEVLHKYYGYETFKKHQKEVIESILSGRDTLAIMPTGGGKSICYQIPAVLFKGVTIVI 63
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ ++ + I +++SS +E+ ++ G +K+L+V+PER + +F
Sbjct: 64 SPLISLMKDQVDNISELGIRASYINSSISQQEILSIFSDLRNGKVKILYVAPERLDSPEF 123
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ T +S V VDEAHCVS+W H+FR SY + + + A TATAT
Sbjct: 124 YQLM-KTIEVSQVAVDEAHCVSQWGHDFRISYTHI-CKFIENFSKRPVVTAFTATATEEV 181
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D+++ +++ + R+NL++S +GN Q + ++ ++++ +
Sbjct: 182 REDIVNQIKLKKEAVFISGFDRENLKISCLKTGNKLQY--------LLNYVKTNEAQSGI 233
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+ E D I L N +SV YH+G+P +DR QE F +K ++VAT AFGMG+
Sbjct: 234 IYASTRKEVDNIYEKLKANDLSVTRYHAGLPDRDRKINQEDFVYDKANIIVATNAFGMGI 293
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
DK +V VIHY++P ++E Y QEIGRAGRDG S C L
Sbjct: 294 DKSNVRYVIHYNMPGNIESYYQEIGRAGRDGESSECILMF 333
>gi|434406622|ref|YP_007149507.1| ATP-dependent DNA helicase RecQ [Cylindrospermum stagnale PCC 7417]
gi|428260877|gb|AFZ26827.1| ATP-dependent DNA helicase RecQ [Cylindrospermum stagnale PCC 7417]
Length = 723
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 198/342 (57%), Gaps = 14/342 (4%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
L + L+ +GYD FR GQ + I+ L + ++++PTG GKSLC+Q+PA++ PGLT+VV
Sbjct: 7 LEQALKYHFGYDQFRPGQRQIIEDALQNRDLLIIMPTGGGKSLCFQLPALLKPGLTVVVS 66
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL+ALM DQ+ L I FL+SS +V + G IK+L+V+PER L+ FL
Sbjct: 67 PLIALMQDQVEALRTNNISATFLNSSLNAFKVRSREEALLQGKIKLLYVAPERLLSERFL 126
Query: 308 SIFTATSL---ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
+ IS +DEAHCVSEW H+FRP Y ++++ LR R LA+TATAT
Sbjct: 127 PLLDLVKEKIGISTFAIDEAHCVSEWGHDFRPEYRQMKS--LRKRYPDVPTLALTATATD 184
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D++ L + ++ + R NL V R ++AY E+ R ++
Sbjct: 185 RVRADIIQQLGLKQPSIHIASFNRQNLYYEV------RTKTKTAYA-ELLGIIRENQGSG 237
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I+ + + D ++ L + ISV SYH+G+ +RS+ Q F + +RV+VAT+AFGM
Sbjct: 238 IIYCLTRK-KVDELTLKLQHDKISVLSYHAGLTDDERSKNQTRFIRDDVRVMVATIAFGM 296
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G++K DV VIHY LP +LE Y QE GRAGRD S C LF
Sbjct: 297 GINKPDVRFVIHYDLPRNLESYYQESGRAGRDDEPSRCTLFF 338
>gi|408410079|ref|ZP_11181332.1| ATP-dependent DNA helicase RecQ [Lactobacillus sp. 66c]
gi|407875753|emb|CCK83138.1| ATP-dependent DNA helicase RecQ [Lactobacillus sp. 66c]
Length = 589
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 197/330 (59%), Gaps = 14/330 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GYDSFR GQ E I+ V ++ + V+PTG GKSLCYQIPA+++PG T+V+ PL
Sbjct: 6 QVLKKYFGYDSFRPGQREIIEKVFKGENVLAVMPTGGGKSLCYQIPALMIPGTTVVISPL 65
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I L+SS E+V +R G IK+L+V+PER + D+
Sbjct: 66 ISLMKDQVDSLKEYGIPAAALNSSTPQEDVNPILRACYEGRIKLLYVTPER-MEMDYFRY 124
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRA--SLLRARLNVECILAMTATATTTTL 367
++LV +DEAHC+S+W H+FRP+Y +L+A S L R NV LA+TATAT
Sbjct: 125 QLNFLEVNLVAIDEAHCISQWGHDFRPAYRQLKAGISALHTRPNV---LALTATATKAVR 181
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ L+IP +N + + R NL + N+ +N R AY+ H+
Sbjct: 182 EDIGQQLDIPETNFVITSFERKNLHFKLV---NSPKNTR-AYIVNYLQKHQGEAGIIYAN 237
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
K + ++ +L SV+ YH+G+ + R+ +Q+ F ++I ++VAT AFGMG+D
Sbjct: 238 TRKK---VEGLTEFLQKQGFSVEGYHAGMSNEARAAVQDDFLYDRIPLIVATNAFGMGID 294
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
K +V V+H + ++LE Y QE GRAGRDG
Sbjct: 295 KSNVRFVLHANSAKNLEAYYQEAGRAGRDG 324
>gi|442612042|ref|ZP_21026738.1| ATP-dependent DNA helicase RecS (RecQ family) [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441746156|emb|CCQ12800.1| ATP-dependent DNA helicase RecS (RecQ family) [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 678
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 167/562 (29%), Positives = 276/562 (49%), Gaps = 35/562 (6%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+G+ SFR GQ E + + S + + PTG+GKSLCYQ+PA++LP LT+VV PL+ALM D
Sbjct: 33 FGFSSFRPGQFEVMAKLCAGHSALAIFPTGSGKSLCYQLPALLLPHLTIVVSPLLALMQD 92
Query: 257 QLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I + SSQ E ++ G +K+L VS ER N F +
Sbjct: 93 QVDFLRSKGIQAASIDSSQSRAEQQMIQAHVESGELKILMVSVERLKNERFRQWISHVQ- 151
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
SL+V+DEAHC+SEW HNFRP Y +L + +LN+ +L +TATAT D+ +
Sbjct: 152 TSLLVIDEAHCISEWGHNFRPDYQKL--PHYQNQLNIPQVLLLTATATRKVQHDMAARFN 209
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++Q R NL LSV Q ++ Y+ + + Y+ +
Sbjct: 210 IMQDHIVQTGFYRPNLDLSVVPLA---QEQKLNYLLKALGKKPGAAIVYV----SLQQQA 262
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ +++ L + ++YH+G+ + R Q F ++I +VVAT+AFGMG+DK ++ V
Sbjct: 263 ETLAKQLQAAGLKARAYHAGLDDQTRQAAQAAFMQDEIDIVVATIAFGMGVDKGNIRFVA 322
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSLMYSDGVDEYAINKFLC 553
HY LP+S+E Y QEIGRAGRDG+ +YC + LD + L + ++ D + I L
Sbjct: 323 HYELPKSIENYAQEIGRAGRDGKPAYCVVLGSLDGVE--TLENFIFGDTPERRNIASLL- 379
Query: 554 QVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQL--LPELKVTCT 611
++ + + + S+V+ S + DIK V+ TLL LEL + Q +++
Sbjct: 380 RLIAQECDENNQW-SVVETRLSAETDIKLLVLKTLLVQLELQGVLTAQFAYYAQMRFKLM 438
Query: 612 LNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMR 671
+ + + ++ T+ SE+K+ D+ T+ + + L +
Sbjct: 439 IGKKQLLEHFDVRRQAIIETVFAFSESKREWTNIDVDTLFRQSDIDNSKLLTIMEYLHQK 498
Query: 672 GEITYELKDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCE 731
G + ++ K Y + + L L+ + S E +++++D M
Sbjct: 499 GWLEFDTKVLTQVYRVDKSKLRQEELINSLSDYFSAKEQSEIKRIDTMLRFF-------- 550
Query: 732 KTHGCNGSLHTPCLQKNILDYF 753
+ + CL +N+ DYF
Sbjct: 551 --------MSSRCLSQNLCDYF 564
>gi|386743723|ref|YP_006216902.1| ATP-dependent DNA helicase RecQ [Providencia stuartii MRSN 2154]
gi|384480416|gb|AFH94211.1| ATP-dependent DNA helicase RecQ [Providencia stuartii MRSN 2154]
Length = 608
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/348 (38%), Positives = 207/348 (59%), Gaps = 20/348 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L +GY SFR GQ I+ +LD + ++++PTG GKSLCYQ+PA++ G+TLVV PL+
Sbjct: 16 ILNNTFGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLI 75
Query: 252 ALMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
+LM DQ+ L +HG L+SSQ +E + + L GAIK+L+V+PER L FLS
Sbjct: 76 SLMKDQVDQLR--LHGIKAACLNSSQTAQEQRDVMALCAEGAIKLLYVAPERLLTDYFLS 133
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
++ + ISL+ VDEAHCVS+W H+FRP Y + LR I+A+TATA TT
Sbjct: 134 QLSSWN-ISLLAVDEAHCVSQWGHDFRPEYRAI--GQLRQHFPDVPIMALTATADETTRA 190
Query: 369 DVMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++ L + LIQ + R N++ ++ E+ +D+++ F ++ K +
Sbjct: 191 DIVRLLALH-DPLIQISSFDRPNIRYTLV--------EKYKPLDQLWFFIKAQKGKAGIV 241
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + + L +SV +YH+G+ + R +Q+ F + +++VVATVAFGMG++
Sbjct: 242 YCNSRSKVEETAERLQKRGLSVAAYHAGLDNQQREWVQDAFLKDNLQIVVATVAFGMGIN 301
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
K +V V H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 302 KSNVRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAVLFYDPADMAWLR 349
>gi|387793516|ref|YP_006258581.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
gi|379656349|gb|AFD09405.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
Length = 705
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 202/336 (60%), Gaps = 13/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR Q I+ +LDKK T++++PTG GKS+C+Q+PA++L GL +V+ PL+
Sbjct: 8 VLKEYFGYDEFRPLQRNIIQSILDKKDTLVLMPTGGGKSICFQVPALLLDGLCVVISPLI 67
Query: 252 ALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA-DFLSI 309
+LM DQ+ L I +L+SSQ EE I G IK+L++SPE+ ++ L
Sbjct: 68 SLMKDQVDALRINGIGAAYLNSSQSFEEEEVVIEDCINGNIKLLYLSPEKLKSSIPMLGR 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
F I L+ +DEAHC+S W H+FRP Y +L S+L+ R + I+A+TATA T +D
Sbjct: 128 FN----IQLLAIDEAHCISSWGHDFRPEYTQL--SILKERFSDVPIVALTATADRVTRKD 181
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L + + R NL L V RQ ++ E+ F S + +
Sbjct: 182 IIRQLNLHKPATFVASFDRPNLNLEVKTGIKTRQKDQ-----EIVQFIHSKPNQSGIIYC 236
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
T+ ++ L ++ ++ +YH+G+ A DR+ QE F +++++VV ATVAFGMG+DK
Sbjct: 237 LSRKTTEELAEKLREHQVNAAAYHAGMSADDRNETQEDFINDRVQVVCATVAFGMGIDKS 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+V VIHY+LP+++E Y QEIGRAGRDG S L+
Sbjct: 297 NVRWVIHYNLPKNIEGYYQEIGRAGRDGLESETILY 332
>gi|291526981|emb|CBK92567.1| ATP-dependent DNA helicase, RecQ family [Eubacterium rectale
M104/1]
Length = 659
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 204/369 (55%), Gaps = 25/369 (6%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N+ + L+ +GYDS R GQ E I +L + + ++PTGAGKSLCYQ+PA++L G+TLV+
Sbjct: 2 NINQTLKQYFGYDSLRTGQRELINGILAGQDVLGIMPTGAGKSLCYQLPALMLKGITLVI 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ++ L +H +++SS ++ + G K+++V+PER F
Sbjct: 62 SPLISLMSDQVKALNQAGVHAAYINSSLTENQIRMALSYASQGRYKIIYVAPERLNTQRF 121
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR-ARLNVECILAMTATATTT 365
L F + IS++ VDEAHC+S+W +FRPSY+ + L R R + + A TATAT
Sbjct: 122 LD-FAYNADISMLTVDEAHCISQWGQDFRPSYLEIAGFLTRLPRRPI--VSAFTATATER 178
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D++++L + + R NL V Q + S + ++ + +
Sbjct: 179 VKNDIVASLGLNNPVTMVTGFDRPNLFFRVVTRRGGSQKDNS-----IINYVKKHEDESG 233
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ D + L + IS YH+G+ +R + QE F ++IRV+VAT AFGMG
Sbjct: 234 IIYCATKKNVDKLYTLLNEQGISAGRYHAGLSNDERKQNQEDFTYDRIRVMVATNAFGMG 293
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK +V V+HY++P+SLE Y QE GRAGRDG + C LF F + +M
Sbjct: 294 IDKSNVRYVLHYNMPQSLEYYYQEAGRAGRDGEEAECVLF------FSKQDIM------- 340
Query: 546 YAINKFLCQ 554
INKFL Q
Sbjct: 341 --INKFLLQ 347
>gi|449551171|gb|EMD42135.1| hypothetical protein CERSUDRAFT_129539 [Ceriporiopsis subvermispora
B]
Length = 693
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 186/650 (28%), Positives = 303/650 (46%), Gaps = 49/650 (7%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAI-KMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
E + L+ V+G++SFR Q +AI +++++ ++ +++ PTG GKSL YQ+PA+ L GLTL
Sbjct: 2 EKAHQALKDVFGFESFRLLQQDAIHRLLVNNENALVIFPTGGGKSLTYQVPALCLDGLTL 61
Query: 246 VVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL+ALM DQ+ L + L S+ + A + G++K+LFV+PER N
Sbjct: 62 VISPLIALMKDQVDALVKRGVKAANLDSTLGADRAAWVKGELLSGSLKILFVAPERLNNE 121
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
F+++ ISL+ VDEAHC+S+W +FRP Y+++ + ++VE +L +TATAT
Sbjct: 122 SFVALMKRVK-ISLLAVDEAHCISQWGASFRPEYLKI--ARFAEEMDVERVLCLTATATP 178
Query: 365 TTLRDVMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
T +D+ ++ I + + K L R NL V ++ N +E+ + + ++
Sbjct: 179 TVAQDICTSFYIDQKDGVFKTPLYRPNLSFKVEVA--NTLDEK---MKRIVPLLQARTGP 233
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I+ + + ++ +R L + YH+G+P ++R +IQ F ++ +V AT+AFG
Sbjct: 234 VIIYCTLQKDAAEVANR-LYPYDLEPMVYHAGLPGEEREQIQIKFMESEKGIVCATIAFG 292
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK D+ +VIH +P++LE Y QE+GRAGRDG S C +FL L D
Sbjct: 293 MGIDKADIRSVIHLYMPKTLENYSQEVGRAGRDGLPSTCLMFLSAADIPILEGFARGDTC 352
Query: 544 DEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLL 603
+ + ++ QV ++ G + S+ FDI+ V+ LEL +
Sbjct: 353 SKKDVELWIQQVAMKEPDADGTI-YFNHYDQSKIFDIRMNVLNLCYAQLELDHKYIRAIT 411
Query: 604 PELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSN 663
P V +L D + I K TK G Y D+ A +++
Sbjct: 412 PFYSVYDISARGSGLQAILKDNSQASQAIRKYWRTKVGGYQIDVVDTAKFSKLDRSELAR 471
Query: 664 QLLNLKMRGEITYELKDPAYCYTIV----EVPSDFCALSAHLTKWLSEVENCKVRKLDRM 719
+ +M G IT + Y IV + L+ + + + E V+KL ++
Sbjct: 472 TISGWEMDGHITTKPSQIRARYLIVNPMIKTVEGIKELANKIHQGMLSREEEAVQKLQQV 531
Query: 720 FHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSS--------PF 771
A CL + YF GD + GQ S F
Sbjct: 532 IDLAT----------------GDDCLAHALATYF-GDSDAVPGGMCGQCSFCVSGSGIEF 574
Query: 772 LRADIKVFLQSNLNAKFT-------PRAVARILHGIASPAYPSTIWSKTH 814
R V + A PR +AR+ GI SP + WS +H
Sbjct: 575 RRKVSTVVDPMRMRAILAACPERDDPRLLARMAFGITSPRLTANKWSTSH 624
>gi|293368180|ref|ZP_06614809.1| ATP-dependent helicase RecQ [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291317603|gb|EFE58020.1| ATP-dependent helicase RecQ [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 604
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 199/353 (56%), Gaps = 11/353 (3%)
Query: 177 VRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIP 236
+R +++ + + L +GY SFR GQ E I +L+ + T+ VL TG GKS+CYQ+P
Sbjct: 1 MRKLKNNKGNVIMQETLSHYFGYKSFRPGQEEIITKILNHQHTLGVLSTGGGKSICYQVP 60
Query: 237 AMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLF 295
++ G T+V+ PL++LM DQ+ L + I +L+SS ++ E I+ GAI+ L+
Sbjct: 61 GLMQGGTTIVISPLISLMKDQVDQLQAMGIQAAYLNSSLTHKQQKEIEEQIKRGAIQFLY 120
Query: 296 VSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECI 355
V+PERF N FL++ I L+ DEAHC+S+W H+FRPSY + + N I
Sbjct: 121 VAPERFENTFFLNLLRKIE-IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TI 178
Query: 356 LAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFS 415
+A+TATAT +D+MS L I +++++ + R NL V N +R +V + +
Sbjct: 179 VALTATATAEVQQDIMSKLSIGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVA 233
Query: 416 FHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
H I+ S + + + + L I YH+G+ K+R Q F +++ V
Sbjct: 234 NHEGQAG--IIYCSTRK-QVEELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEV 290
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
V+AT AFGMG+DK +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 291 VIATNAFGMGIDKSNVRYVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 343
>gi|383119448|ref|ZP_09940187.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_2_5]
gi|382973213|gb|EES87060.2| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_2_5]
Length = 601
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 199/335 (59%), Gaps = 12/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I ++ KK +++++PTG GKS+CYQ+PA+++ G +V+ PL++
Sbjct: 5 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIF 310
LM DQ+ L I G L+SS E A R G +K+L++SPE+ L+ AD+L
Sbjct: 65 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKLLSEADYL--- 121
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+SL VDEAHC+S+W H+FRP Y R+ LR + ++A+TATA T D+
Sbjct: 122 LRDMTLSLFAVDEAHCISQWGHDFRPEYARM--GFLRNQFPNVPMIALTATADKITREDI 179
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL LSV G + + A VD + S Y + S
Sbjct: 180 VRQLQLRQPQIFISSFDRPNLSLSVK-RGYQPKEKSKAIVDFITRHRGESGIVYCMSRS- 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L + I YH+G+ A+ R Q+ F +++I VV AT+AFGMG+DK +
Sbjct: 238 ---KTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY+LP+S+E + QEIGRAGRDG S LF
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILF 329
>gi|416124920|ref|ZP_11595715.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis FRI909]
gi|319401202|gb|EFV89417.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis FRI909]
Length = 592
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 195/341 (57%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+
Sbjct: 1 MQKTLSHYFGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVIS 60
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL
Sbjct: 61 PLISLMKDQVDQLQAMGIQAAYLNSSLTHKQQKEIEERIKRGAIQFLYVAPERFENTFFL 120
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I L+ DEAHC+S+W H+FRPSY + + + I+A+TATAT
Sbjct: 121 NLLRKIK-IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQSF-TIVALTATATAEVQ 178
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+MS L I +++++ + R NL V N +R +V + + H I+
Sbjct: 179 QDIMSKLSIGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIY 231
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L I YH+G+ K+R Q F +++ VV+AT AFGMG+D
Sbjct: 232 CSTRK-QVEELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGID 290
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 291 KSNVRYVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|289766362|ref|ZP_06525740.1| ATP-dependent DNA helicase recQ [Fusobacterium sp. D11]
gi|289717917|gb|EFD81929.1| ATP-dependent DNA helicase recQ [Fusobacterium sp. D11]
Length = 606
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 196/333 (58%), Gaps = 11/333 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L+ YGYD+FR+GQ + I +L+K++ + ++ TGAGKS+CYQIPA+I GLT+V+ PL
Sbjct: 7 RILKEYYGYDNFREGQEKIIDAILEKRNVLGIMTTGAGKSVCYQIPALIFEGLTIVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +L+S+ +E + + I+ G IK+L++SPER N FL+
Sbjct: 67 ISLMKDQVDSLRLIGIEASYLNSTLTSDEYNKILFRIKRGKIKLLYISPERLENKFFLN- 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTL 367
F T IS+VVVDEAHCVS+W NFR SY+R+ L ++ LA TATAT
Sbjct: 126 FIKTVKISMVVVDEAHCVSQWGENFRRSYLRIADFVKYLGGENQIQT-LAFTATATPKIK 184
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE---VFSFHRSSKHYY 424
D++ L I + RDN+ V +N ++ +D + + R K
Sbjct: 185 VDIIEKLNIVNPFIYIDYFNRDNIYFKVV---DNSGLDKDLDIDSKPFIIDYLRKHKGKS 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ D I YL + SV YH G+ ++R + Q+LF ++ + ++VAT AFGM
Sbjct: 242 GIIYCSTRKNVDDIYNYLVGFNRSVTKYHGGMTKEERDKNQKLFLNDDVEIMVATNAFGM 301
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G++K ++ VIH ++P LE Y QE GRAGRDG
Sbjct: 302 GINKSNIRYVIHANIPADLESYYQEAGRAGRDG 334
>gi|37200123|dbj|BAC95951.1| ATP-dependent DNA helicase RecQ [Vibrio vulnificus YJ016]
Length = 625
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/345 (35%), Positives = 202/345 (58%), Gaps = 14/345 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY +FR+GQ I+ ++ K +++++PTG GKSLCYQIPA++ PG+TLV+ PL+
Sbjct: 33 VLSQVFGYQTFREGQQSVIEAAVEGKDSLVIMPTGGGKSLCYQIPALVRPGITLVISPLI 92
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++S+ + + + G +K+++VSPER L DF+
Sbjct: 93 SLMKDQVDQLKANGVAAECVNSTLSRDALLSVYNRMHAGQLKLVYVSPERVLMRDFIERL 152
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L +++ VDEAHC+S+W H+FRP Y L L+ +A+TATA T +D+
Sbjct: 153 ENLPL-AMIAVDEAHCISQWGHDFRPEYAAL--GQLKHHFPHVPFMALTATADDATRKDI 209
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L + ++ + R N++ + E+ V +V + S K + G
Sbjct: 210 LSRLHLNEPHVYLGSFDRPNIRYDLV--------EKHKPVSQVIRYLESQKGNCGIIYCG 261
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K +
Sbjct: 262 SRKKVEMLTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPN 321
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
V V+H+ +P ++E Y QE GRAGRDG + + D DIT+ R
Sbjct: 322 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADITWLR 366
>gi|340621987|ref|YP_004740439.1| ATP-dependent DNA helicase recQ [Capnocytophaga canimorsus Cc5]
gi|339902253|gb|AEK23332.1| ATP-dependent DNA helicase recQ [Capnocytophaga canimorsus Cc5]
Length = 729
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/376 (36%), Positives = 211/376 (56%), Gaps = 17/376 (4%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
S +L L+ +G+D+F+ Q E ++ V+++++T +++PTG GKSLCYQ+PAM+ G
Sbjct: 4 SKNDLQSALKHYFGFDTFKGQQEEIVRSVINRQNTFVIMPTGGGKSLCYQLPAMVSKGTA 63
Query: 245 LVVCPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298
+V+ PL+ALM +D +R + V H L+SS E+ E + I+ K+L+V+P
Sbjct: 64 IVISPLIALMKNQVDAMRGISSTDSVAH--VLNSSLNKGEIREVMEDIRSKKTKLLYVAP 121
Query: 299 ERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAM 358
E L D + F T IS V VDEAHC+SEW H+FRP Y ++ + R + ++A+
Sbjct: 122 ES-LTKDEYANFLKTIDISFVAVDEAHCISEWGHDFRPEYRNIKTIIDRLGEGI-PVVAL 179
Query: 359 TATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR 418
TATAT D++ L + +N+ + + R NL V N + +V +
Sbjct: 180 TATATPKVQDDILKNLGMAEANVFKASFNRPNLYYEVRPKTKNVDADIIRFVKQ-----H 234
Query: 419 SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
S K I +S K E +S+ L N I+ YH+G+ AK R++ Q++F ++ VVVA
Sbjct: 235 SKKSGIIYCLSRKKVEE--LSQTLQVNGITAVPYHAGLDAKTRAKHQDMFLMEEVDVVVA 292
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
T+AFGMG+DK DV VIH+ +P+S+E Y QE GRAGRDG +C F +L M
Sbjct: 293 TIAFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFM 352
Query: 539 YSDGVDEYAINKFLCQ 554
+ E I + L Q
Sbjct: 353 VGKPIAEQEIGQALLQ 368
>gi|423136282|ref|ZP_17123925.1| ATP-dependent DNA helicase RecQ [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371961959|gb|EHO79573.1| ATP-dependent DNA helicase RecQ [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 606
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 196/333 (58%), Gaps = 11/333 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L+ YGYD+FR+GQ + I +L+K++ + ++ TGAGKS+CYQIPA+I GLT+V+ PL
Sbjct: 7 RILKEYYGYDNFREGQEKIIDAILEKRNVLGIMTTGAGKSVCYQIPALIFEGLTIVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +L+S+ +E + + I+ G IK+L++SPER N FL+
Sbjct: 67 ISLMKDQVDSLRLIGIEASYLNSTLTSDEYNKILFRIKRGKIKLLYISPERLENKFFLN- 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTL 367
F T IS+VVVDEAHCVS+W NFR SY+R+ L ++ LA TATAT
Sbjct: 126 FIKTVKISMVVVDEAHCVSQWGENFRRSYLRIADFVKYLGGENQIQT-LAFTATATPKIK 184
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE---VFSFHRSSKHYY 424
D++ L I + RDN+ V +N +++ +D + + R K
Sbjct: 185 VDIIEKLNIVNPFVYVDYFNRDNIYFKVV---DNSGLDKNLDIDSKPFIIDYLRKHKGKS 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ D I YL + SV YH G+ ++R + Q+LF + + ++VAT AFGM
Sbjct: 242 GIIYCSTRKNVDDIYNYLVGFNRSVTKYHGGMTKEERDKNQKLFLDDDVEIMVATNAFGM 301
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G++K ++ VIH ++P LE Y QE GRAGRDG
Sbjct: 302 GINKSNIRYVIHANIPADLESYYQEAGRAGRDG 334
>gi|322421607|ref|YP_004200830.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M18]
gi|320127994|gb|ADW15554.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M18]
Length = 598
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 193/328 (58%), Gaps = 12/328 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L ++GY +FR Q E ++ VL K +++PTG GKSLCYQ+PA+ LPG LVV PL
Sbjct: 7 KILNDIFGYKAFRPRQQEIVETVLAGKDAFVLMPTGGGKSLCYQVPALCLPGTALVVSPL 66
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + +S+ E + + G +K+L+V+PER L+ FL
Sbjct: 67 ISLMKDQVDALRENGVAAACYNSALGEAEARRVLAELHAGELKLLYVAPERLLSDGFLER 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
T ISL +DEAHCVS+W H+FRP Y +L +LR ++A+TATA T D
Sbjct: 127 IK-TLPISLFAIDEAHCVSQWGHDFRPEYAQL--GVLREIFPQIPMIALTATADAQTKGD 183
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++S L + + R N++ V + N N+ +A++ R + + +S
Sbjct: 184 ILSRLGLEDAACFFAGFDRPNIRYGV-MEKNKPFNQLTAFLAT-----RKDEAGIVYALS 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K E ++R LC I +YH+G+P K+R ++QE F + +++VVATVAFGMG+DK
Sbjct: 238 RKRVEE--VARKLCGAGIKAAAYHAGLPDKERHQVQEAFLRDDVKIVVATVAFGMGIDKS 295
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDG 517
+V V+HY +P+S+E Y QE GRAGRDG
Sbjct: 296 NVRFVVHYDMPKSIESYYQETGRAGRDG 323
>gi|291526484|emb|CBK92071.1| ATP-dependent DNA helicase, RecQ family [Eubacterium rectale DSM
17629]
Length = 659
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 203/369 (55%), Gaps = 25/369 (6%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N+ + L+ +GYDS R GQ E I +L + ++PTGAGKSLCYQ+PA++L G+TLV+
Sbjct: 2 NINQTLKQYFGYDSLRTGQEELINGILAGHDVLGIMPTGAGKSLCYQLPALMLKGITLVI 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ++ L +H +++SS ++ + G K+++V+PER F
Sbjct: 62 SPLISLMSDQVKALNQAGVHAAYINSSLTENQIRMALSYASQGRYKIIYVAPERLNTPRF 121
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR-ARLNVECILAMTATATTT 365
L F + IS++ VDEAHC+S+W +FRPSY+ + L R R + + A TATAT
Sbjct: 122 LD-FACNADISMLTVDEAHCISQWGQDFRPSYLEIAGFLTRLPRRPI--VSAFTATATER 178
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D++++L + + R NL V Q + S + ++ + +
Sbjct: 179 VKNDIVASLGLNNPVTMVTGFDRPNLFFRVVTRKGGSQKDNS-----IINYVKKHEDESG 233
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ D + L + IS YH+G+ +R + QE F ++IRV+VAT AFGMG
Sbjct: 234 IIYCATKKNVDKLYTLLNEQGISAGRYHAGLSNDERKQNQEDFTYDRIRVMVATNAFGMG 293
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK +V V+HY++P+SLE Y QE GRAGRDG + C LF F + +M
Sbjct: 294 IDKSNVRYVLHYNMPQSLEYYYQEAGRAGRDGEEAECVLF------FSKQDIM------- 340
Query: 546 YAINKFLCQ 554
INKFL Q
Sbjct: 341 --INKFLLQ 347
>gi|219855440|ref|YP_002472562.1| hypothetical protein CKR_2097 [Clostridium kluyveri NBRC 12016]
gi|219569164|dbj|BAH07148.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 721
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 198/340 (58%), Gaps = 11/340 (3%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N +L YGY++F+ Q E I+ +L + T+ ++PTG GKS+CYQIPA++ G+T+V+
Sbjct: 6 NAEEVLHKYYGYETFKKHQKEVIESILSGRDTLAIMPTGGGKSICYQIPAVLFKGVTIVI 65
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ ++ + I +++SS +E+ ++ G +K+L+V+PER + +F
Sbjct: 66 SPLISLMKDQVDNISELGIRASYINSSISQQEILSIFSDLRNGKVKILYVAPERLDSPEF 125
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ T +S V VDEAHCVS+W H+FR SY + + + A TATAT
Sbjct: 126 YQLM-KTIEVSQVAVDEAHCVSQWGHDFRISYTHI-CKFIENFSKRPVVTAFTATATEEV 183
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D+++ +++ + R+NL++S +GN Q + ++ ++++ +
Sbjct: 184 REDIVNQIKLKKEAVFISGFDRENLKISCLKTGNKLQY--------LLNYVKTNEAQSGI 235
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+ E D I L N +SV YH+G+P +DR QE F +K ++VAT AFGMG+
Sbjct: 236 IYASTRKEVDNIYEKLKANDLSVTRYHAGLPDRDRKINQEDFVYDKANIIVATNAFGMGI 295
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
DK +V VIHY++P ++E Y QEIGRAGRDG S C L
Sbjct: 296 DKSNVRYVIHYNMPGNIESYYQEIGRAGRDGESSECILMF 335
>gi|238922686|ref|YP_002936199.1| hypothetical protein EUBREC_0261 [Eubacterium rectale ATCC 33656]
gi|238874358|gb|ACR74065.1| hypothetical protein EUBREC_0261 [Eubacterium rectale ATCC 33656]
Length = 659
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/399 (34%), Positives = 218/399 (54%), Gaps = 29/399 (7%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N+ + L+ +GYDS R GQ E I +L + ++PTGAGKSLCYQ+PA++L G+TLV+
Sbjct: 2 NINQTLKQYFGYDSLRTGQEELINGILAGHDVLGIMPTGAGKSLCYQLPALMLKGITLVI 61
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ++ L +H +++SS ++ + G K+++V+PER F
Sbjct: 62 SPLISLMSDQVKALNQAGVHAAYINSSLTENQIRMALSYASQGRYKIIYVAPERLNTPRF 121
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR-ARLNVECILAMTATATTT 365
L F + IS++ VDEAHC+S+W +FRPSY+ + L R R + + A TATAT
Sbjct: 122 LD-FACNADISMLTVDEAHCISQWGQDFRPSYLEIAGFLTRLPRRPI--VSAFTATATER 178
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
D++++L + + R NL V Q + S + ++ + +
Sbjct: 179 VKNDIVASLGLNNPVTMVTGFDRPNLFFRVVTRKGGSQKDNS-----IINYVKKHEDESG 233
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ D + L + IS YH+G+ +R + QE F ++IRV+VAT AFGMG
Sbjct: 234 IIYCATKKNVDKLYTLLNEQGISAGRYHAGLSNDERKQNQEDFTYDRIRVMVATNAFGMG 293
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+DK +V V+HY++P+SLE Y QE GRAGRDG + C LF F + +M
Sbjct: 294 IDKSNVRYVLHYNMPQSLEYYYQEAGRAGRDGEEAECVLF------FSKQDIM------- 340
Query: 546 YAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEV 584
INKFL Q S G + S ++++A+ + +++ +
Sbjct: 341 --INKFLLQ----NKASAGDVASDMQKTANDRRKLQQMI 373
>gi|126738371|ref|ZP_01754092.1| ATP-dependent DNA helicase RecQ [Roseobacter sp. SK209-2-6]
gi|126720868|gb|EBA17573.1| ATP-dependent DNA helicase RecQ [Roseobacter sp. SK209-2-6]
Length = 688
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 193/329 (58%), Gaps = 18/329 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
LR ++G+D+FR GQ E + V ++ + ++PTG GKSLCYQ+PA++ G+T+V+ PL+A
Sbjct: 17 LREIFGFDAFRPGQQEIVAAVTQGENVLAIMPTGGGKSLCYQLPALLRHGITVVISPLIA 76
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+R L V + G L+S EE + I+ G +K+L+++PER + L++
Sbjct: 77 LMRDQVRALQAVGVSAGALTSGNTEEETEAVWQAIEAGELKLLYMAPERLASGATLNMLQ 136
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ +SL+ VDEAHCVS+W H+FRP Y+R+ LR L+V + A TATA + T ++
Sbjct: 137 RIN-VSLIAVDEAHCVSQWGHDFRPDYLRI--GELRQALDVP-LAAFTATADSETREEIT 192
Query: 372 SAL---EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
L + P S L + R N+ L+ + R+ ++ F + K +
Sbjct: 193 RKLFDGQAPRSFL--RGFDRPNIHLAFAAKDGPRR--------QILEFAAARKGQSGITY 242
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
G +T+ ++R L D + YH G+ A+DR ++ F +VVATVAFGMG+DK
Sbjct: 243 CGTRAKTEDLARALRDAGHAACHYHGGMEAEDRREVETRFAREDGLIVVATVAFGMGIDK 302
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
D+ V H LP+S+E Y QEIGRAGRDG
Sbjct: 303 PDIRWVAHADLPKSIEAYYQEIGRAGRDG 331
>gi|425450984|ref|ZP_18830806.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
gi|389767941|emb|CCI06812.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
Length = 701
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 210/355 (59%), Gaps = 30/355 (8%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ ++L ++L+ +GYD FR Q + I+ L+ + ++++PTG GKSLC+Q+PA+I G+
Sbjct: 2 AAIDSLEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGV 61
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ ++V + LI G IK+L+V+PER L
Sbjct: 62 TVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPERLL 121
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL++ ++ + VDEAHCVS+W H+FRP Y +++ +R R ILA+T
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQ--VRQRFPSVPILALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN-------ERSAYVDE 412
ATAT D+ IQ+ LRD S+ ++ NR N + S +
Sbjct: 180 ATATQQVREDI-----------IQQLGLRD---ASIHIASFNRPNLYYEVQPKTSKSYQQ 225
Query: 413 VFSFHRSSKHYYILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
++ + + K I+ IS K D ++ +L + I+ YH+G+ ++RS Q F +
Sbjct: 226 LYQYIKGKKGSGIVYCISRK--TVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRD 283
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++++VAT+AFGMG++K DV V+HY LP +LE Y QE GRAGRDG + C LF
Sbjct: 284 DVQIMVATIAFGMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFF 338
>gi|60682718|ref|YP_212862.1| ATP-dependent DNA helicase [Bacteroides fragilis NCTC 9343]
gi|60494152|emb|CAH08944.1| putative ATP-dependent DNA helicase [Bacteroides fragilis NCTC
9343]
Length = 607
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 199/335 (59%), Gaps = 12/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I ++ KK +++++PTG GKS+CYQ+PA+++ G +V+ PL++
Sbjct: 11 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 70
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIF 310
LM DQ+ L I G L+SS E A R G +K+L++SPE+ L+ AD+L
Sbjct: 71 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKLLSEADYL--- 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+SL VDEAHC+S+W H+FRP Y R+ LR + ++A+TATA T D+
Sbjct: 128 LRDMTLSLFAVDEAHCISQWGHDFRPEYARM--GFLRNQFPNVPMIALTATADKITREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL LSV G + + A +D + S Y + S
Sbjct: 186 VRQLQLRQPQIFISSFDRPNLSLSVK-RGYQPKEKSKAIIDFITRHRGESGIIYCMSRS- 243
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L + I YH+G+ A+ R Q+ F +++I VV AT+AFGMG+DK +
Sbjct: 244 ---KTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 300
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY+LP+S+E + QEIGRAGRDG S LF
Sbjct: 301 VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILF 335
>gi|379795192|ref|YP_005325190.1| putative ATP-dependent DNA helicase [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356872182|emb|CCE58521.1| putative ATP-dependent DNA helicase [Staphylococcus aureus subsp.
aureus MSHR1132]
Length = 593
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 193/341 (56%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+
Sbjct: 2 MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLMLGGTTIVIS 61
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I FL+SS +E + + G I+ L+V+PERF N FL
Sbjct: 62 PLISLMKDQVDQLKAMGIQAAFLNSSLSQKEQQRIEKELSNGEIQFLYVAPERFENRYFL 121
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I L+ DEAHC+S+W H+FRPSY + + + + I+A+TATAT
Sbjct: 122 NLLQRIK-IHLIAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQ 179
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+ L I ++ ++ + R NL V N +R YV + H I+
Sbjct: 180 QDIREKLNIAQTDQVKTSTKRRNLIFKV-----NPTYQRQKYVIDYIKSHDEDAG--IVY 232
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L I YH+G+ K+R Q F ++++VVVAT AFGMG+D
Sbjct: 233 CSTRK-QVEELKEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 292 KSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|333029863|ref|ZP_08457924.1| ATP-dependent DNA helicase RecQ [Bacteroides coprosuis DSM 18011]
gi|332740460|gb|EGJ70942.1| ATP-dependent DNA helicase RecQ [Bacteroides coprosuis DSM 18011]
Length = 605
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 204/337 (60%), Gaps = 12/337 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GY+ FR Q E I+ +LDKK T++++PTG GKS+CYQ+PA++L G+T+V+ PL++
Sbjct: 10 LKTKFGYEGFRPLQREIIENILDKKDTLVLMPTGGGKSICYQLPALLLKGITIVISPLIS 69
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA-DFLSIF 310
LM DQ+ L I+ G L+S+ E + + G IK+L++SPE+ L+ D+L
Sbjct: 70 LMKDQVEALLANGINAGALNSNNSDTENELIKQNCRQGKIKLLYISPEKLLSEIDYL--- 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL VDEAHC+S+W H+FRP Y +L +L ++A+TATA T +D+
Sbjct: 127 LKDIDISLFAVDEAHCISQWGHDFRPEYTQL--GILHQYFPSVPMVALTATADKITRQDI 184
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL L V + +Q ++ Y+ F R + I +S
Sbjct: 185 IRQLKLKNPKIFISSFDRPNLSLKVEVG--YQQKDKHKYIYN-FIQDRPGEAGIIYCMSR 241
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K ET I RYL IS YH+G+ R + Q+ F +++++VV AT+AFGMG+DK +
Sbjct: 242 KKTET--ICRYLEKKGISATIYHAGLAPNIREKAQDDFINDRVQVVCATIAFGMGIDKSN 299
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
V VIHY++P+S+E Y QEIGRAGRDG S LF +
Sbjct: 300 VRWVIHYNMPKSIESYYQEIGRAGRDGVASDTVLFYN 336
>gi|242242089|ref|ZP_04796534.1| ATP-dependent helicase RecQ [Staphylococcus epidermidis W23144]
gi|242234454|gb|EES36766.1| ATP-dependent helicase RecQ [Staphylococcus epidermidis W23144]
Length = 604
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 21 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 80
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 81 QVDQLQAMGIQAAYLNSSLTHKQQKEIEERIKRGAIQFLYVAPERFENTFFLNLLRKIK- 139
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + + I+A+TATAT +D+MS L
Sbjct: 140 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQSF-TIVALTATATAEVQQDIMSKLS 198
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 199 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 250
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 251 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 310
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 311 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 343
>gi|443668675|ref|ZP_21134223.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
gi|159029588|emb|CAO90247.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330750|gb|ELS45444.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
Length = 701
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 210/355 (59%), Gaps = 30/355 (8%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ ++L ++L+ +GYD FR Q + I+ L+ + ++++PTG GKSLC+Q+PA+I G+
Sbjct: 2 AAIDSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGV 61
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ ++V + LI G IK+L+V+PER L
Sbjct: 62 TVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPERLL 121
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL++ ++ + VDEAHCVS+W H+FRP Y +++ +R R ILA+T
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQ--VRQRFPSVPILALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN-------ERSAYVDE 412
ATAT D+ IQ+ LRD S+ ++ NR N + S +
Sbjct: 180 ATATQQVREDI-----------IQQLGLRD---ASIHIASFNRPNLYYEVRAKTSKSYQQ 225
Query: 413 VFSFHRSSKHYYILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
++ + + K I+ IS K D ++ +L + I+ YH+G+ ++RS Q F +
Sbjct: 226 LYQYIKGKKGSGIVYCISRK--TVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRD 283
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++++VAT+AFGMG++K DV V+HY LP +LE Y QE GRAGRDG + C LF
Sbjct: 284 DVQIMVATIAFGMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFF 338
>gi|89067309|ref|ZP_01154822.1| ATP-dependent DNA helicase RecQ [Oceanicola granulosus HTCC2516]
gi|89046878|gb|EAR52932.1| ATP-dependent DNA helicase RecQ [Oceanicola granulosus HTCC2516]
Length = 679
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 157/467 (33%), Positives = 232/467 (49%), Gaps = 55/467 (11%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LLR V+G+D FR GQ E ++ V + K+T+ ++PTG GKSLC+Q+PA++ G+T+V+ PL+
Sbjct: 6 LLRDVFGFDCFRPGQEEIVRAVAEGKNTLAIMPTGGGKSLCFQLPALLREGVTVVISPLI 65
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+R L + G L+S EE A ++ G +K+L+++PER +A +
Sbjct: 66 ALMRDQVRGLREAGVEAGALTSGNTEEETAAVWEALEAGRMKLLYMAPERLASAGAQRML 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+SL+ VDEAHCVS+W H+FRP Y+R+ LR +L V + A TATA T ++
Sbjct: 126 ARIG-VSLIAVDEAHCVSQWGHDFRPDYLRI--GELRRQLGVP-LAAFTATADAETRAEI 181
Query: 371 MSAL---EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+ L P S L + R NL L+ ++ R+ ++ +F + K +
Sbjct: 182 VEKLFDGVAPESFL--RGFDRPNLHLAFAVKDQPRR--------QILAFAAARKGQSGIV 231
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
G +T+ +S L D S YH G+ A +R ++ F +VVATVAFGMG+D
Sbjct: 232 YCGTRAKTESLSAALRDAGHSACHYHGGMEADERRDVERRFSQEDGLIVVATVAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGR-LSYCHLFLDDITYFRLRSLMYSDGVDEY 546
K D+ V H LP+S+E Y QEIGRAGRDG LF D FR + + DE
Sbjct: 292 KPDIRWVAHADLPKSIEAYYQEIGRAGRDGAPAETLTLFGQDDIRFRRQQIDEGLAPDE- 350
Query: 547 AINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPEL 606
HG+L +L+ + L C + Y PE
Sbjct: 351 -----------RKAADHGRLNALLG-------------LAEALDCRRRALLGYFGESPET 386
Query: 607 KVTCTL------NFHKTTPTLLADKDKMVATILKKSETKQGQYVFDI 647
C L F TTP +A ++ L+ E ++ DI
Sbjct: 387 CGRCDLCDKPPEVFDATTPVRMA-----LSAALRTGEYFGAGHLIDI 428
>gi|53714712|ref|YP_100704.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis YCH46]
gi|52217577|dbj|BAD50170.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis YCH46]
Length = 607
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 199/335 (59%), Gaps = 12/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I ++ KK +++++PTG GKS+CYQ+PA+++ G +V+ PL++
Sbjct: 11 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 70
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIF 310
LM DQ+ L I G L+SS E A R G +K+L++SPE+ L+ AD+L
Sbjct: 71 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKLLSEADYL--- 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+SL VDEAHC+S+W H+FRP Y R+ LR + ++A+TATA T D+
Sbjct: 128 LRDMTLSLFAVDEAHCISQWGHDFRPEYARM--GFLRNQFPNVPMIALTATADKITREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL LSV G + + A +D + S Y + S
Sbjct: 186 VRQLQLRQPQIFISSFDRPNLSLSVK-RGYQPKEKSKAIIDFITRHRGESGIVYCMSRS- 243
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L + I YH+G+ A+ R Q+ F +++I VV AT+AFGMG+DK +
Sbjct: 244 ---KTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 300
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY+LP+S+E + QEIGRAGRDG S LF
Sbjct: 301 VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILF 335
>gi|417980284|ref|ZP_12620965.1| ATP-dependent DNA helicase [Lactobacillus casei 12A]
gi|410525511|gb|EKQ00413.1| ATP-dependent DNA helicase [Lactobacillus casei 12A]
Length = 592
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 193/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD FR GQ +AI VL +ST++V+PTG GKSLCYQIPAM+L GLTLVV PL+
Sbjct: 9 ILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGLTLVVSPLI 68
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I F++S +E+A+ + + G IK+L+V+PERF + D+
Sbjct: 69 ALMKDQVDALNDNGIPAAFINSILDYQEIADRLDQARSGRIKLLYVAPERF-DTDWFVQR 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ ISL +DEAHC+S+W H+FRPSY+ L A++ + ++A+TATAT +D+
Sbjct: 128 LGSTDISLFAIDEAHCISQWGHDFRPSYLNL-ANVAAQLPSQPPVIALTATATPRVAQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L IP +I R NL V R + Y+ + + I+ S
Sbjct: 187 CQRLAIPADGMINTGFERSNLSFKVV-----RDQDEDRYLLDYLKLNVDQAG--IIYAST 239
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ E D + +L + V YH+G+ R+ QE F ++ +++AT AFGMG+DK +
Sbjct: 240 RK-EVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIH +P+ +E Y QE GRAGRDG
Sbjct: 299 VRFVIHAQIPKDVESYYQEAGRAGRDG 325
>gi|425433706|ref|ZP_18814184.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
gi|389675683|emb|CCH95185.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
Length = 701
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 210/355 (59%), Gaps = 30/355 (8%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ ++L ++L+ +GYD FR Q + I+ L+ + ++++PTG GKSLC+Q+PA+I G+
Sbjct: 2 AAIDSLEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGV 61
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ ++V + LI G IK+L+V+PER L
Sbjct: 62 TVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPERLL 121
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL++ ++ + VDEAHCVS+W H+FRP Y +++ +R R ILA+T
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQ--VRQRFPSVPILALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN-------ERSAYVDE 412
ATAT D+ IQ+ LRD S+ ++ NR N + S +
Sbjct: 180 ATATQQVREDI-----------IQQLGLRD---ASIHIASFNRPNLYYEVQPKTSKSYQQ 225
Query: 413 VFSFHRSSKHYYILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
++ + + K I+ IS K D ++ +L + I+ YH+G+ ++RS Q F +
Sbjct: 226 LYQYIKGKKGSGIVYCISRK--TVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRD 283
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++++VAT+AFGMG++K DV V+HY LP +LE Y QE GRAGRDG + C LF
Sbjct: 284 DVQIMVATIAFGMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFF 338
>gi|91228026|ref|ZP_01262111.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 12G01]
gi|91188255|gb|EAS74554.1| ATP-dependent DNA helicase RecQ [Vibrio alginolyticus 12G01]
Length = 611
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 202/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FRDGQ I ++ + ++++LPTG GKSLCYQIPA++ G+TLV+ PL
Sbjct: 18 RVLEGVFGYQEFRDGQQLVIDAAIEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+++VSPER L DF+
Sbjct: 78 ISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLKLVYVSPERVLMRDFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L S++ VDEAHC+S+W H+FRP Y L L+ + + +A+TATA T RD
Sbjct: 138 LENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKQQFSHVPFMALTATADDATRRD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L++ + + R N++ ++ E+ V ++ + + K +
Sbjct: 195 ILERLQLNNPEVYLGSFDRPNIRYNLV--------EKHKPVSQIVRYLETQKGNCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ ++++ LC+N I YH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 247 CSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|379020492|ref|YP_005297154.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus M013]
gi|418950054|ref|ZP_13502262.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-160]
gi|359829801|gb|AEV77779.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus M013]
gi|375377835|gb|EHS81273.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-160]
Length = 593
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 193/341 (56%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+
Sbjct: 2 MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVIS 61
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I FL+SS +E + + G I+ L+V+PERF N FL
Sbjct: 62 PLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFL 121
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT
Sbjct: 122 NMLQRIK-IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQ 179
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+ L I ++ I+ + R NL V N +R +V + H I+
Sbjct: 180 QDIREKLNIAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFVLDYIKTHDEDAG--IIY 232
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L I YH+G+ K+R Q F ++++VVVAT AFGMG+D
Sbjct: 233 CSTRK-QVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 292 KSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|419801388|ref|ZP_14326616.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK262]
gi|419845355|ref|ZP_14368628.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK2019]
gi|385193739|gb|EIF41095.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK262]
gi|386415831|gb|EIJ30351.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK2019]
Length = 618
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 200/347 (57%), Gaps = 12/347 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
LR V+GY SFR GQ E I L + ++V+ TG GKSLCYQIPA+ PGLTLV+ PL++
Sbjct: 19 LRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTLVISPLIS 78
Query: 253 LMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I FL+SSQ PE+ + + G +K+L+VSPE+ + F + +
Sbjct: 79 LMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQLKLLYVSPEKVMTNSFFQLIS 138
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
IS + +DEAHC+S+W H+FRP Y +L L+A I+A+TATA T +D++
Sbjct: 139 YAQ-ISFIAIDEAHCISQWGHDFRPEYTQLGG--LKAAFPNAPIMALTATADYATRQDIL 195
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+ L++ + + R N++ ++ E+ ++++ F + K +
Sbjct: 196 THLKLDNPHKYIGSFDRPNIRYTLE--------EKFKPMEQLTRFVLAQKGKSGIVYCNS 247
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+ + I+ L + +S +YH+G+ R R+Q+ F + ++VVVAT+AFGMG++K +V
Sbjct: 248 RSKVERIAEILRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGMGINKSNV 307
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
V H+ LP S+E Y QE GRAGRD + LF + Y L+ ++
Sbjct: 308 RFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKIL 354
>gi|432332157|ref|YP_007250300.1| ATP-dependent DNA helicase RecQ [Methanoregula formicicum SMSP]
gi|432138866|gb|AGB03793.1| ATP-dependent DNA helicase RecQ [Methanoregula formicicum SMSP]
Length = 611
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 196/348 (56%), Gaps = 12/348 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LLR +G SF Q E I VL T+ +L TG GKSLCYQ+PA+ L GLTLV+ PL+
Sbjct: 7 LLRQYWGSPSFLPLQEEIIGSVLSGNDTLAILATGGGKSLCYQLPALYLGGLTLVISPLI 66
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +SS +E A I +++LF+SPE+ L FLS
Sbjct: 67 SLMKDQVDDLQARGIPAAAWNSSLDQKERARITGGISDANLRLLFISPEKCLQPGFLSSL 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
AT+ + L+ +DEAHC+SEW HNFRP Y +L + ++ ++A+TATA RD+
Sbjct: 127 -ATARVRLIAIDEAHCISEWGHNFRPEYRQL--ARIKEVFPGIPLIALTATAIPGVRRDI 183
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L++ + + R NL+ V ++N D + S Y L S
Sbjct: 184 RQQLKMECAREFTGSFNRKNLRYRVV----PKKNPLVFLADYLGQHREESGIVYCLSRS- 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
ET+ ++ L S +YH+G+ ++R R+QE F ++++VV ATVAFGMG+DK D
Sbjct: 239 ---ETETVAGDLQQRGFSAAAYHAGLSRQERERVQESFIRDRVQVVCATVAFGMGIDKPD 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
V VIHY LP++LE Y QE GRAGRDG+ S C L Y R+RSL+
Sbjct: 296 VRFVIHYDLPKTLEGYYQETGRAGRDGQYSECVLLYSRGDYARIRSLL 343
>gi|410627347|ref|ZP_11338088.1| ATP-dependent DNA helicase RecQ [Glaciecola mesophila KMM 241]
gi|410153093|dbj|GAC24857.1| ATP-dependent DNA helicase RecQ [Glaciecola mesophila KMM 241]
Length = 602
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 199/350 (56%), Gaps = 17/350 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FRDGQ + I+ +L ++++PTG GKSLCYQIPA++L GLT+VV PL+
Sbjct: 14 VLKTVFGYDEFRDGQHDVIEKILQGHDVLVLMPTGGGKSLCYQIPALVLEGLTIVVSPLI 73
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L + +++S+ EE+ R +Q G K+++V+PER + DF+
Sbjct: 74 ALMKDQVDALVASGVSAAYINSNLSSEEMHNVYRGMQDGRYKLIYVAPERLMQFDFIQRL 133
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ L +L VDEAHCVS W H+FR Y RL L+ + ++ +TATA TT D+
Sbjct: 134 HSLEL-ALFAVDEAHCVSHWGHDFRKEYRRL--GQLKQQFPNVPVVGLTATADITTRSDI 190
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY--VDEVFSFHRSSKHYYILQI 428
+ L + + + + R N+ R N+ Y D+V + + + I+
Sbjct: 191 LQQLALQDPFIFKGSFDRPNI----------RYNQLFKYKATDQVIQYVKQQEGSGIIYC 240
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + + D +S L I+ YH+G+ R +IQ F + I ++VATVAFGMG++K
Sbjct: 241 NSRK-KVDDLSIALARQGINCAGYHAGLEGPIRDKIQRDFIQDNIDIIVATVAFGMGINK 299
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
+V V+H+ LP S+E Y QE GRAGRDG + L D+ R+R +
Sbjct: 300 SNVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWI 349
>gi|410637731|ref|ZP_11348302.1| ATP-dependent DNA helicase RecQ [Glaciecola lipolytica E3]
gi|410142699|dbj|GAC15507.1| ATP-dependent DNA helicase RecQ [Glaciecola lipolytica E3]
Length = 609
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/352 (37%), Positives = 202/352 (57%), Gaps = 17/352 (4%)
Query: 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
+L+ V+GY FRDGQ + I+ VL ++ ++++PTG GKSLCYQIPA+ILPG+T+VV P
Sbjct: 19 AEVLKEVFGYSHFRDGQQQVIEQVLSQRDALVLMPTGGGKSLCYQIPALILPGITIVVSP 78
Query: 250 LVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
L++LM DQ+ L + F++SS E++ R +Q G K+L+V+PER + +F+
Sbjct: 79 LISLMKDQVDALTASGVAATFINSSIPREQLLNIYRQLQDGKFKLLYVAPERLMQLEFID 138
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+L SL+ VDEAHCVS W H+FR Y RL L N+ ++ +TATA T
Sbjct: 139 RLHTLNL-SLIAVDEAHCVSHWGHDFRQDY-RLLGQLKTHFPNIP-VMGLTATADIATRA 195
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY--VDEVFSFHRSSKHYYIL 426
D+ L + + + + R N+ R N S Y VD++ + + + I+
Sbjct: 196 DITQQLNLQTPYVFRSSFDRPNI----------RYNLLSKYKAVDQLIHYVKGQEGSGIV 245
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+ + + D +S L I+ YH+G+ + R +IQ F + + V+VATVAFGMG+
Sbjct: 246 YCNSR-AKVDELSFKLAKQGINSAGYHAGLEPEIREKIQRDFIQDNVDVIVATVAFGMGI 304
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
+K +V V+H+ LP S+E Y QE GRAGRDG + L D+ R+R +
Sbjct: 305 NKSNVRYVVHFDLPRSIESYYQETGRAGRDGMPAEALLLYDEKDAARIRQWI 356
>gi|425461242|ref|ZP_18840722.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
gi|389825935|emb|CCI23927.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
Length = 701
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 210/355 (59%), Gaps = 30/355 (8%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ ++L ++L+ +GYD FR Q + I+ L+ + ++++PTG GKSLC+Q+PA+I G+
Sbjct: 2 AAIDSLEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGV 61
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ ++V + LI G IK+L+V+PER L
Sbjct: 62 TVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPERLL 121
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL++ ++ + VDEAHCVS+W H+FRP Y +++ +R R ILA+T
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQ--VRQRFPSVPILALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN-------ERSAYVDE 412
ATAT D+ IQ+ LRD S+ ++ NR N + S +
Sbjct: 180 ATATQQVREDI-----------IQQLGLRD---ASIHIASFNRPNLYYEVRAKTSKSYQQ 225
Query: 413 VFSFHRSSKHYYILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
++ + + K I+ IS K D ++ +L + I+ YH+G+ ++RS Q F +
Sbjct: 226 LYQYIKGKKGSGIVYCISRK--TVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRD 283
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++++VAT+AFGMG++K DV V+HY LP +LE Y QE GRAGRDG + C LF
Sbjct: 284 DVQIMVATIAFGMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFF 338
>gi|328948910|ref|YP_004366247.1| RecQ familyATP-dependent DNA helicase [Treponema succinifaciens DSM
2489]
gi|328449234|gb|AEB14950.1| ATP-dependent DNA helicase, RecQ family [Treponema succinifaciens
DSM 2489]
Length = 520
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/328 (39%), Positives = 195/328 (59%), Gaps = 12/328 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY+SFR Q + I+ VLD + T+ V+PTG GKSLCY+IPA+ILPG+T+VV PL+
Sbjct: 13 ILKSVFGYESFRPMQRKIIQNVLDGRDTLAVMPTGGGKSLCYEIPALILPGITVVVSPLI 72
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L I L+SS + I G IK+L+VSPE + + +
Sbjct: 73 ALMQDQVAQLESYGISAVCLNSSLERNHYQKCCEKILSGKIKLLYVSPEGLNSGRMIRLL 132
Query: 311 TAT-SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ S + + +DEAHC+SEW H+FRP YM + + +R + LA+TATAT D
Sbjct: 133 QESKSSVDCIAIDEAHCISEWGHDFRPDYMEI--THIRNQFPKSVFLALTATATKQVQAD 190
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L + + + R N+ L V ++ +++V +F + + +
Sbjct: 191 IIKNLRMENPEIFMASFNRPNIFLQVI--------KKDKPIEQVLNFIENHPNQSGIIYC 242
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ DL+++ L N I SYH+G+ R++ Q+ F S+K ++VATVAFGMG++K
Sbjct: 243 FSRKQVDLVAQELHINRIKALSYHAGLNDAQRTKNQQDFISDKADIMVATVAFGMGINKP 302
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDG 517
DV VIH+ +P+S+E+Y QEIGRAGRDG
Sbjct: 303 DVRFVIHFDMPKSIEQYYQEIGRAGRDG 330
>gi|336411370|ref|ZP_08591837.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_56FAA]
gi|423251179|ref|ZP_17232194.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T00C08]
gi|423254505|ref|ZP_17235435.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T12C07]
gi|335942081|gb|EGN03930.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_56FAA]
gi|392652136|gb|EIY45798.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T00C08]
gi|392653827|gb|EIY47478.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T12C07]
Length = 601
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 199/335 (59%), Gaps = 12/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I ++ KK +++++PTG GKS+CYQ+PA+++ G +V+ PL++
Sbjct: 5 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIF 310
LM DQ+ L I G L+SS E A R G +K+L++SPE+ L+ AD+L
Sbjct: 65 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKLLSEADYL--- 121
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+SL VDEAHC+S+W H+FRP Y R+ LR + ++A+TATA T D+
Sbjct: 122 LRDMTLSLFAVDEAHCISQWGHDFRPEYARM--GFLRNQFPNVPMIALTATADKITREDI 179
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL LSV G + + A +D + S Y + S
Sbjct: 180 VRQLQLRQPQIFISSFDRPNLSLSVK-RGYQPKEKSKAIIDFITRHRGESGIVYCMSRS- 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L + I YH+G+ A+ R Q+ F +++I VV AT+AFGMG+DK +
Sbjct: 238 ---KTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY+LP+S+E + QEIGRAGRDG S LF
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILF 329
>gi|384171248|ref|YP_005552625.1| ATP-dependent DNA helicase RecQ [Arcobacter sp. L]
gi|345470858|dbj|BAK72308.1| ATP-dependent DNA helicase RecQ [Arcobacter sp. L]
Length = 706
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 198/336 (58%), Gaps = 11/336 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ ++G++ FR Q E + +L+K+ + +LPTG GKSLCYQ+P +++ G T+V+ PL
Sbjct: 11 QILKDIFGHEHFRSFQEEVVDCILNKQDVLTILPTGGGKSLCYQLPTLLMNGTTVVISPL 70
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
+ALM DQ++ L + I +SS+ +E + T++ + G +K ++V+PERF + +F+S+
Sbjct: 71 IALMQDQIKALNDLNISAEMISSATSNDENSFTLQKLLNGELKFIYVAPERFTSNEFVSV 130
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ I+ V+DEAHCVS W H FR Y L L+ I A TATAT D
Sbjct: 131 LQRIN-INYFVIDEAHCVSAWGHEFRAEYRNL--DRLKRFFPNTAICAFTATATKKVEAD 187
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ S+L + + +RDNL + V N + + + +F ++ K + +
Sbjct: 188 IASSLNLQNPRHFRAKTVRDNLDIKVEPRIANGKTQ-------ILNFLKTHKGLCGIIYT 240
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E + + +L +N S K+YH+G+ ++ + F KI +VVAT+AFGMG+DK
Sbjct: 241 FTRKEAESTAEFLSENGYSAKAYHAGLSNDKKNEVFNDFVYEKIDIVVATIAFGMGIDKS 300
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
++ VIH SLP++LE Y QEIGRAGRDG +SY ++
Sbjct: 301 NIRFVIHTSLPKTLENYYQEIGRAGRDGEMSYVYML 336
>gi|386728483|ref|YP_006194866.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
71193]
gi|387602077|ref|YP_005733598.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus ST398]
gi|404478119|ref|YP_006709549.1| ATP-dependent DNA helicase [Staphylococcus aureus 08BA02176]
gi|418309483|ref|ZP_12921037.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21331]
gi|418979288|ref|ZP_13527085.1| RecQ [Staphylococcus aureus subsp. aureus DR10]
gi|283470015|emb|CAQ49226.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus ST398]
gi|365238816|gb|EHM79644.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21331]
gi|379992967|gb|EIA14416.1| RecQ [Staphylococcus aureus subsp. aureus DR10]
gi|384229776|gb|AFH69023.1| RecQ [Staphylococcus aureus subsp. aureus 71193]
gi|404439608|gb|AFR72801.1| putative ATP-dependent DNA helicase [Staphylococcus aureus
08BA02176]
Length = 593
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 10 FGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKD 69
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I FL+SS +E + + G I+ L+V+PERF N FL++
Sbjct: 70 QVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNLLQRIK- 128
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT +D+ L
Sbjct: 129 IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQQDIREKLN 187
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ I+ + R NL V N +R +V + H I+ S + +
Sbjct: 188 IAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFVLDYIKTHDEDAG--IIYCSTRK-QV 239
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F ++++VVVAT AFGMG+DK +V VI
Sbjct: 240 EELQEALESQKIDSVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVI 299
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 300 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|154686329|ref|YP_001421490.1| hypothetical protein RBAM_018970 [Bacillus amyloliquefaciens FZB42]
gi|154352180|gb|ABS74259.1| YocI [Bacillus amyloliquefaciens FZB42]
Length = 592
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 196/342 (57%), Gaps = 12/342 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDK-KSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
E LL +GYDS R GQ +AI+ V +K K+T+ ++PTG GKS+CYQIPA++ G T+
Sbjct: 3 EKAQSLLAHYFGYDSLRAGQKQAIQSVAEKRKNTVCIMPTGGGKSICYQIPALLFEGTTI 62
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ+ L I +++S+Q ++ E + ++ GA ++ +++PER ++
Sbjct: 63 VISPLISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSS 122
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
+F+ I + + LV +DEAHC+S+W H+FRPSY + L I+A+TATAT
Sbjct: 123 EFIHILQNIT-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFNELKEPPVIIALTATATP 180
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L I + R+NL V + G N+ Y+++ +KH
Sbjct: 181 EVHDDICKQLHIKKEQTVYTGFARENLTFKV-VKGENKDRFIERYLEK-------NKHEA 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ + ETD + L + I+ YH G+ DR QE F +++I+V+VAT AFGM
Sbjct: 233 GIIYTATRKETDRLYDKLKRSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGM 292
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK ++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 293 GIDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLNSECVLLF 334
>gi|410639269|ref|ZP_11349819.1| ATP-dependent DNA helicase RecQ [Glaciecola chathamensis S18K6]
gi|410648965|ref|ZP_11359360.1| ATP-dependent DNA helicase RecQ [Glaciecola agarilytica NO2]
gi|410131472|dbj|GAC07759.1| ATP-dependent DNA helicase RecQ [Glaciecola agarilytica NO2]
gi|410141191|dbj|GAC08006.1| ATP-dependent DNA helicase RecQ [Glaciecola chathamensis S18K6]
Length = 604
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 201/350 (57%), Gaps = 17/350 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD+FRDGQ E I+ +L K ++++PTG GKSLCYQIPA++L GLT+V+ PL+
Sbjct: 17 VLKNVFGYDAFRDGQREVIEQILQGKDVLVLMPTGGGKSLCYQIPALVLDGLTIVISPLI 76
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L + +++S+ EE+ R +Q G K+++V+PER + DF+
Sbjct: 77 ALMKDQVDALVASGVSAAYINSNLSNEEMLNVYRGMQDGRYKLIYVAPERLMQFDFIQRL 136
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++L VDEAHCVS W H+FR Y +L ++ + ++ +TATA TT D+
Sbjct: 137 HSLN-VALFAVDEAHCVSHWGHDFRKEYRQL--GQIKQQFPGVPVVGLTATADITTRSDI 193
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY--VDEVFSFHRSSKHYYILQI 428
+ L + + + + R N+ R N+ Y D+V + + I+
Sbjct: 194 LQQLALEQPFVFKGSFDRPNI----------RYNQLFKYKATDQVIQYVKQQDGSGIIYC 243
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + + D +S L I+ YH+G+ R +IQ F + + ++VATVAFGMG++K
Sbjct: 244 NSRK-KVDDLSIALAKQGINCAGYHAGLEGPIRDKIQRDFIQDNVDIIVATVAFGMGINK 302
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
+V V+H+ LP S+E Y QE GRAGRDG + L D+ R+R +
Sbjct: 303 SNVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWI 352
>gi|302337379|ref|YP_003802585.1| ATP-dependent DNA helicase RecQ [Spirochaeta smaragdinae DSM 11293]
gi|301634564|gb|ADK79991.1| ATP-dependent DNA helicase RecQ [Spirochaeta smaragdinae DSM 11293]
Length = 601
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/345 (40%), Positives = 194/345 (56%), Gaps = 12/345 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L+ V+GY SF+ Q E I +L + +PTG GKSLCYQIPA++ GLT+VV PL
Sbjct: 6 RILKSVFGYSSFKANQKEVINAILAGRDLFAAMPTGGGKSLCYQIPALLFDGLTVVVSPL 65
Query: 251 VALMIDQL-RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
+ALM DQ+ L I FL+SSQ E+ ET R + G IK+L++SPER L D +
Sbjct: 66 IALMKDQVDAALSLGIPAAFLNSSQSQEDATETYRRLYRGEIKLLYLSPER-LAVDGFTE 124
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
A +SL VDEAHC+SEW H+FRP Y+ L + LR I A TATAT D
Sbjct: 125 RLAAFNVSLFAVDEAHCLSEWGHDFRPDYLAL--AQLRTAFPTVPIAAFTATATVRVQED 182
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L + +++ + R L V + E + + + H + + ++S
Sbjct: 183 IIRLLRLEDPFILRASFNRKELFYQVL-----PKTEVLSQIAQYIGAH-PDQSGIVYRLS 236
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K +TD YL I YH+G+ +R+R QE F ++ ++V+VAT AFGMG+DK
Sbjct: 237 RK--DTDKTVDYLGKLGIRALPYHAGMDKDERARNQERFNNDDVQVIVATTAFGMGIDKN 294
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRL 534
++ VIH LP+S+E Y QE GRAGRDG S C LF RL
Sbjct: 295 NIRYVIHGDLPKSMEGYYQETGRAGRDGLESQCILFFGTADIARL 339
>gi|82750423|ref|YP_416164.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
gi|82655954|emb|CAI80358.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
Length = 593
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 10 FGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKD 69
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I FL+SS +E + + G I+ L+V+PERF N FL++
Sbjct: 70 QVGQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIK- 128
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT +D+ L
Sbjct: 129 IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQQDIREKLN 187
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ I+ + R NL V N +R ++ + H I+ S + +
Sbjct: 188 IAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIYCSTRK-QV 239
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F ++++VVVAT AFGMG+DK +V VI
Sbjct: 240 EELQEALESQKIESDIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVI 299
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 300 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|374287671|ref|YP_005034756.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
gi|301166212|emb|CBW25787.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
Length = 605
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 202/334 (60%), Gaps = 11/334 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D+ + ++L+ +G+ SFR Q + + +LD TM ++PTG GKS+CYQ+PA+ L G+TL
Sbjct: 9 DKQIHQILKDKFGHKSFRLSQHDIVNSILDGHDTMAIMPTGGGKSICYQVPALYLEGITL 68
Query: 246 VVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
VV PL++LM DQ+ +L IH +L+S+Q PE+ E I I+ K++++SPE L+
Sbjct: 69 VVSPLISLMSDQVSNLAANGIHAVYLNSNQSPEQRQEAISDIRSKRAKLVYISPEGILSG 128
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
S+ + ISL+ +DEAHCVS+W H FRP Y RL LL+ ++A+TATA
Sbjct: 129 GNSSLLESID-ISLIAIDEAHCVSQWGHEFRPDYTRL--GLLKELFPSTPLMALTATADE 185
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
T RD+ L++ N+ + R N++ S+ R++E +DE S + +
Sbjct: 186 KTRRDIAYQLKMEEPNIYISSFDRSNIKYSIL----EREDEIKQ-LDEFISKNHAGDTGI 240
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ +S K E+ +S+ L + +YH+G+ A +R +Q+ F ++ ++VATVAFGM
Sbjct: 241 VYCLSRKKVES--VSKKLKERGHHSFAYHAGLSANERDFVQKAFNNDDGIIIVATVAFGM 298
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
G+D+ DV V H LP+S+E Y QE GRAGRDG+
Sbjct: 299 GIDRPDVRFVAHLDLPKSVESYYQETGRAGRDGQ 332
>gi|295425078|ref|ZP_06817784.1| ATP-dependent helicase RecQ [Lactobacillus amylolyticus DSM 11664]
gi|295065275|gb|EFG56177.1| ATP-dependent helicase RecQ [Lactobacillus amylolyticus DSM 11664]
Length = 590
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/333 (40%), Positives = 194/333 (58%), Gaps = 14/333 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
N R+LR V+GY FR GQ + I +VL +++ + V+PTGAGKSLCYQIPA++ G+TLV+
Sbjct: 2 NAQRILRNVFGYKVFRSGQEKVINLVLQRQNVLAVMPTGAGKSLCYQIPALLNSGVTLVI 61
Query: 248 CPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL++LM DQ+ L I L+S+ EEV +R G IK+L+++PER L D+
Sbjct: 62 SPLISLMKDQIDSLHQNGIEAAALNSATPQEEVNPILRQAYEGKIKLLYMTPER-LAMDY 120
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATT 364
+SLV VDEAHC+S+W H+FRP+Y ++ + L+++ N ILA+TATAT
Sbjct: 121 FRYQLNFIDVSLVAVDEAHCISQWGHDFRPAYRQILDGINSLKSKPN---ILALTATATP 177
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L I N + + +R NL V N + + Y+ + H +
Sbjct: 178 AVQDDIAKQLNIKKENYVVTSFVRPNLSFQVV----NSSKDNNLYIYDYIKAHVNQAGIV 233
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ E I+ YL IS SYH G+ +DR IQ+ F ++++V+VAT AFGM
Sbjct: 234 YTNTRKRVGE---ITAYLQRKGISAASYHGGMATEDRDCIQDDFQFDRLQVIVATNAFGM 290
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G+DK +V VIH + ++E Y QE GRAGRDG
Sbjct: 291 GIDKSNVRFVIHANSARNIESYYQEAGRAGRDG 323
>gi|209527293|ref|ZP_03275803.1| ATP-dependent DNA helicase RecQ [Arthrospira maxima CS-328]
gi|209492281|gb|EDZ92626.1| ATP-dependent DNA helicase RecQ [Arthrospira maxima CS-328]
Length = 739
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/360 (38%), Positives = 205/360 (56%), Gaps = 16/360 (4%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A ++L + L+ +GYDSFR GQ E I+ VL K+ + ++PTG GKSLC+Q+PA++ PGL
Sbjct: 9 AQPQSLQQCLKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGL 68
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
TLVV PL+ALM DQ+ L I FL+S+ E + I G IK+L+V+PER L
Sbjct: 69 TLVVSPLIALMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQIKLLYVAPERLL 128
Query: 303 NADFLSI---FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ FL A IS +V+DEAHCVS+W H+FRP Y +++ +R+R +A+T
Sbjct: 129 SPQFLEFLDRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQ--VRSRYPHVPAIALT 186
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATAT D++ + + + + R NL V ++ + V E S
Sbjct: 187 ATATERVRFDIIKQIVLKQPYVHVASFYRSNLYYQVIPKQPKKRFPQLLKVIESMSGSG- 245
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
I+ S + + ++ L N+I YH+G+ DR F + +R++VAT
Sbjct: 246 -----IIYCSSRK-RVEEVALKLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVAT 299
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539
+AFGMG+DK DV VIHY LP+SLE Y QE GRAGRDG+ + C LF +Y ++++ Y
Sbjct: 300 IAFGMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFF---SYGDMKTIEY 356
>gi|398816615|ref|ZP_10575262.1| ATP-dependent DNA helicase RecQ [Brevibacillus sp. BC25]
gi|398032302|gb|EJL25647.1| ATP-dependent DNA helicase RecQ [Brevibacillus sp. BC25]
Length = 591
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 197/336 (58%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR +GY+SFR+GQ + I +L T+ ++PTG GKS+CYQ+PAM+ G+T+V+ PL+
Sbjct: 8 ILRKYFGYESFREGQKKIITSLLAGHDTVGIMPTGGGKSICYQVPAMLQDGVTIVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I ++SS EV + +R+ G K+L+++PER + F ++
Sbjct: 68 SLMKDQVDVLVSMGIPATQINSSLDYSEVRDRLRMAARGEYKLLYIAPERLESEAFQNLI 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
IS + VDEAHCVS+W H+FRPSY+ + A L++ + A+TATAT D+
Sbjct: 128 QDVP-ISFIAVDEAHCVSQWGHDFRPSYLAI-ARFLQSLPQRPLVAALTATATPEVTEDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L++ L RDNL LSV G NR+ AY+ R++K + +
Sbjct: 186 KLQLQLQDERLFITGFGRDNLILSVR-KGENRREFIQAYL-------RANKQQAGIIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + L +V YH+G+ ++R+ QE F + +R ++AT AFGMG+DK +
Sbjct: 238 TRKDVDALHADLDKRGFAVTKYHAGLTEEERAANQEAFLYDDVRTMIATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHY++P++LE Y QE GRAGRDG S C L
Sbjct: 298 VRYVIHYNMPKNLEAYYQEAGRAGRDGEPSECILLF 333
>gi|418329675|ref|ZP_12940728.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
14.1.R1.SE]
gi|418632623|ref|ZP_13195053.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU128]
gi|420175453|ref|ZP_14681891.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM061]
gi|420193084|ref|ZP_14698939.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM023]
gi|365229798|gb|EHM70926.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
14.1.R1.SE]
gi|374832193|gb|EHR95913.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU128]
gi|394243388|gb|EJD88754.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM061]
gi|394260207|gb|EJE05022.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis
NIHLM023]
Length = 592
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+CYQ+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ E I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKEIEERIKRGAIQFLYVAPERFENTFFLNLLRKIK- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + + I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQSF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|258423370|ref|ZP_05686261.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A9635]
gi|417890500|ref|ZP_12534573.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21200]
gi|418283577|ref|ZP_12896317.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21202]
gi|418560563|ref|ZP_13125076.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21252]
gi|257846431|gb|EEV70454.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A9635]
gi|341854635|gb|EGS95501.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21200]
gi|365166629|gb|EHM58293.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21202]
gi|371971627|gb|EHO89024.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21252]
Length = 593
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 193/341 (56%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+
Sbjct: 2 MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVIS 61
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I FL+SS +E + + G I+ L+V+PERF N FL
Sbjct: 62 PLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFL 121
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT
Sbjct: 122 NMLQRIK-IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQ 179
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+ L I ++ I+ + R NL V N +R ++ + H I+
Sbjct: 180 QDIREKLNIAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIY 232
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L I YH+G+ K+R Q F ++++VVVAT AFGMG+D
Sbjct: 233 CSTRK-QVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 292 KSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|300172490|ref|YP_003771655.1| ATP-dependent DNA helicase RecQ [Leuconostoc gasicomitatum LMG
18811]
gi|406599147|ref|YP_006744493.1| ATP-dependent DNA helicase RecQ [Leuconostoc gelidum JB7]
gi|299886868|emb|CBL90836.1| ATP-dependent DNA helicase RecQ [Leuconostoc gasicomitatum LMG
18811]
gi|406370682|gb|AFS39607.1| ATP-dependent DNA helicase RecQ [Leuconostoc gelidum JB7]
Length = 602
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 196/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD+FR GQL+ I+ VL K + ++PTG GKS+ YQ+PAM+ G+TLV+ PL+
Sbjct: 9 ILKEKFGYDNFRTGQLDVIEKVLAHKHALAIMPTGGGKSITYQLPAMLFDGITLVISPLI 68
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I FL+S+ + A+ + ++ G K+L+VSPER + F F
Sbjct: 69 SLMKDQVDGLDAMGIDATFLNSTLSGQVQAQRMSDLRSGYYKMLYVSPERLEISSFFD-F 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I LV +DEAH +S+W H+FRPSY+ + L + N +L +TATAT +++
Sbjct: 128 IQQLPIELVAIDEAHVMSQWGHDFRPSYLNILPLLAKIPGN-PAVLGLTATATDRVRQNL 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L + + I RDNL L ++ + + RQ YV E + R +K + +
Sbjct: 187 QQLLGVSDEDTILTGFARDNLALKIAHNVDKRQ-----YVQE---YLRENKDQSGIIYAA 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + +L + YH+G+P ++R +QE F ++++V+VAT AFGMG++K +
Sbjct: 239 TRKQVDELYEFLNKKGVKAGHYHAGLPERERQTMQEAFLFDEVQVMVATNAFGMGINKPN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHYS+P ++E Y QEIGRAGRDG
Sbjct: 299 VRFVIHYSVPGNIEAYYQEIGRAGRDG 325
>gi|418888620|ref|ZP_13442756.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1524]
gi|418993430|ref|ZP_13541068.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG290]
gi|377747188|gb|EHT71155.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG290]
gi|377754130|gb|EHT78039.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1524]
Length = 592
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 193/341 (56%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+
Sbjct: 1 MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVIS 60
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I FL+SS +E + + G I+ L+V+PERF N FL
Sbjct: 61 PLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFL 120
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT
Sbjct: 121 NMLQRIK-IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQ 178
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+ L I ++ I+ + R NL V N +R ++ + H I+
Sbjct: 179 QDIREKLNIAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIY 231
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L I YH+G+ K+R Q F ++++VVVAT AFGMG+D
Sbjct: 232 CSTRK-QVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGID 290
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 291 KSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|375359515|ref|YP_005112287.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
gi|301164196|emb|CBW23754.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
Length = 607
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 199/335 (59%), Gaps = 12/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I ++ KK +++++PTG GKS+CYQ+PA+++ G +V+ PL++
Sbjct: 11 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 70
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIF 310
LM DQ+ L I G L+SS E A R G +K+L++SPE+ L+ AD+L
Sbjct: 71 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKLLSEADYL--- 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+SL VDEAHC+S+W H+FRP Y R+ LR + ++A+TATA T D+
Sbjct: 128 LRDMTLSLFAVDEAHCISQWGHDFRPEYARM--GFLRNQFPNVPMIALTATADKITREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL LSV G + + A +D + S Y + S
Sbjct: 186 VRQLQLRQPQIFISSFDRPNLSLSVK-RGYQPKEKSKAIIDFITRHRGESGIVYCMSRS- 243
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L + I YH+G+ A+ R Q+ F +++I VV AT+AFGMG+DK +
Sbjct: 244 ---KTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 300
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY+LP+S+E + QEIGRAGRDG S LF
Sbjct: 301 VRWVIHYNLPKSIESFYQEIGRAGRDGMASDTILF 335
>gi|260494755|ref|ZP_05814885.1| ATP-dependent DNA helicase RecQ [Fusobacterium sp. 3_1_33]
gi|260197917|gb|EEW95434.1| ATP-dependent DNA helicase RecQ [Fusobacterium sp. 3_1_33]
Length = 606
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 195/333 (58%), Gaps = 11/333 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L+ YGYD+FR+GQ + I +L+K++ + ++ TGAGKS+CYQIPA+I GLT+V+ PL
Sbjct: 7 RILKEYYGYDNFREGQEKIIDAILEKRNILGIMTTGAGKSVCYQIPALIFEGLTIVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +L+S+ +E + + I+ G IK+L++SPER N FL+
Sbjct: 67 ISLMKDQVDSLRLIGIEASYLNSTLTSDEYNKILFRIKRGKIKLLYISPERLENKFFLN- 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTL 367
F T IS+VVVDEAHCVS+W NFR SY+R+ L ++ LA TATAT
Sbjct: 126 FIKTVKISMVVVDEAHCVSQWGENFRRSYLRIADFVKYLGGENQIQT-LAFTATATPKIK 184
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE---VFSFHRSSKHYY 424
D++ L I + RDN+ V +N ++ +D + + R K
Sbjct: 185 VDIIEKLNIVNPFVYVDYFNRDNIYFKVV---DNSGLDKDLDIDSKPFIIDYLRKHKGKS 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ D I YL + SV YH G+ ++R + Q+LF + + ++VAT AFGM
Sbjct: 242 GIIYCSTRKNVDDIYNYLVGFNRSVTKYHGGMTKEERDKNQKLFLDDDVEIMVATNAFGM 301
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G++K ++ VIH ++P LE Y QE GRAGRDG
Sbjct: 302 GINKSNIRYVIHANIPADLESYYQEAGRAGRDG 334
>gi|254457812|ref|ZP_05071239.1| ATP-dependent DNA helicase RecQ [Sulfurimonas gotlandica GD1]
gi|373869008|ref|ZP_09605406.1| ATP-dependent DNA helicase recQ [Sulfurimonas gotlandica GD1]
gi|207085205|gb|EDZ62490.1| ATP-dependent DNA helicase RecQ [Sulfurimonas gotlandica GD1]
gi|372471109|gb|EHP31313.1| ATP-dependent DNA helicase recQ [Sulfurimonas gotlandica GD1]
Length = 593
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 151/425 (35%), Positives = 229/425 (53%), Gaps = 35/425 (8%)
Query: 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
G LL+ +G+DSFR Q EA+ +L+ + + +LPTG GKSLCYQ+P++++ G+T+VV P
Sbjct: 4 GNLLKTTFGHDSFRQSQEEAVDAILNSRDLITILPTGGGKSLCYQLPSLMMDGVTVVVSP 63
Query: 250 LVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAE-TIRLIQVGAIKVLFVSPERFLNADFL 307
L+ALM DQ+ L I ++SSQ +V E T RL+Q G IK+L+++PER F+
Sbjct: 64 LIALMQDQVNALKNNDIKAEMINSSQDFNDVQEITSRLLQ-GDIKLLYIAPERLSANGFI 122
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
+ I+ V+DEAHCVSEW H FR Y L + L + NV I A TATAT
Sbjct: 123 ELLQRVK-INFFVIDEAHCVSEWGHEFRADYRNL-SKLKQIFPNVN-IAAFTATATHKVQ 179
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++ L + ++ LRDNL +S S N R+ ++ F S I
Sbjct: 180 DDIVRTLNLNNPLQLRGKTLRDNLTIS---SEQRVGNGRTQLIN--FLSKHSGNCGIIYA 234
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S K E ++ +L V +YH+G ++ R+++ F ++ ++VAT+AFGMG+D
Sbjct: 235 FSKKDVEA--VAGFLKTKGFKVAAYHAGFSSEVRNKVYRDFIYEEVDIIVATIAFGMGID 292
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL------------FLD-------- 527
K ++ V+H S+P+++E Y QEIGRAGRDG + L F+D
Sbjct: 293 KSNIRFVVHMSMPKTMENYYQEIGRAGRDGLEAQTLLLYTKSDDVKMRSFIDVIENSEYK 352
Query: 528 DITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLT 587
++ Y +LR MYS +K + + F + + S G +C + K DI E
Sbjct: 353 ELLYNKLRK-MYSYSNSSECRHKLIAKYFEDDIGSCGDICDNCRRGEVEKIDITLESQ-K 410
Query: 588 LLTCL 592
LL+C+
Sbjct: 411 LLSCI 415
>gi|50123092|ref|YP_052259.1| ATP-dependent DNA helicase RecQ [Pectobacterium atrosepticum
SCRI1043]
gi|49613618|emb|CAG77069.1| ATP-dependent DNA helicase [Pectobacterium atrosepticum SCRI1043]
Length = 608
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 204/347 (58%), Gaps = 16/347 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++LR +GY FR GQ E I L + ++++PTG GKSLCYQIPA+++ GLTLVV PL
Sbjct: 15 QVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + L+S+Q E+ E + + G IK+L+++PER FL
Sbjct: 75 ISLMKDQVDQLQAYGVSAACLNSTQTREQQFEVMAGCRTGQIKLLYIAPERLTTESFLD- 133
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
A ISL+ VDEAHC+S+W H+FRP Y L ++ R +A+TATA TT D
Sbjct: 134 HLAHWQISLIAVDEAHCISQWGHDFRPEYRAL--GQIKQRFPHLPFIALTATADETTRND 191
Query: 370 VMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
++ L++ S LIQ + R N++ ++ E+ +D+++ F ++ + +
Sbjct: 192 IVRLLDLQ-SPLIQISSFDRPNIRYTLV--------EKFKPLDQLWMFVQAQRGKSGIIY 242
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ IS L +S +YH+G+ + R+++QE F + ++VVVATVAFGMG++K
Sbjct: 243 CNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGINK 302
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLR 349
>gi|237741599|ref|ZP_04572080.1| ATP-dependent DNA helicase recQ [Fusobacterium sp. 4_1_13]
gi|294785793|ref|ZP_06751081.1| ATP-dependent DNA helicase RecQ [Fusobacterium sp. 3_1_27]
gi|229429247|gb|EEO39459.1| ATP-dependent DNA helicase recQ [Fusobacterium sp. 4_1_13]
gi|294487507|gb|EFG34869.1| ATP-dependent DNA helicase RecQ [Fusobacterium sp. 3_1_27]
Length = 606
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 197/333 (59%), Gaps = 11/333 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ YGYD+FR+GQ + I +L+K++ + ++ TGAGKS+CYQIPA+I GLT+V+ PL
Sbjct: 7 KILKEYYGYDNFREGQEKIIDAILEKRNVLGIMTTGAGKSVCYQIPALIFEGLTIVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +L+S+ +E + + I+ G IK+L++SPER N FL+
Sbjct: 67 ISLMKDQVDSLRLIGIEASYLNSTLTSDEYNKILFRIKRGKIKLLYISPERLENKFFLN- 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR--ARLNVECILAMTATATTTTL 367
F T IS+VVVDEAHCVS+W NFR SY+R+ A ++ + N LA TATAT
Sbjct: 126 FIKTVKISMVVVDEAHCVSQWGENFRKSYLRI-ADFVKYISGENQIQTLAFTATATPKIK 184
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE---VFSFHRSSKHYY 424
D++ L I + RDN+ V +N ++ +D + + R +K
Sbjct: 185 VDIIEKLNIVNPFIYVDYFNRDNIYFKVV---DNSGLDKDLDIDSKPFIVDYLRKNKGKS 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ D I YL SV YH G+ ++R + Q+LF + + ++VAT AFGM
Sbjct: 242 GIIYCSTRKNVDDIYSYLIGFDRSVTKYHGGMSKEEREKNQKLFLDDDVEIMVATNAFGM 301
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G++K ++ VIH ++P LE Y QE GRAGRDG
Sbjct: 302 GINKSNIRYVIHANIPADLESYYQEAGRAGRDG 334
>gi|221140936|ref|ZP_03565429.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253315358|ref|ZP_04838571.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255005512|ref|ZP_05144113.2| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|284023742|ref|ZP_06378140.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 132]
gi|296274784|ref|ZP_06857291.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus MR1]
gi|384549581|ref|YP_005738833.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
JKD6159]
gi|415683546|ref|ZP_11448762.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
CGS00]
gi|415687646|ref|ZP_11451504.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
CGS01]
gi|415693237|ref|ZP_11455070.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
CGS03]
gi|418578621|ref|ZP_13142716.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1114]
gi|418581436|ref|ZP_13145517.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1605]
gi|418874743|ref|ZP_13429009.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIGC93]
gi|418877567|ref|ZP_13431806.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1165]
gi|418880425|ref|ZP_13434645.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1213]
gi|418883352|ref|ZP_13437551.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1769]
gi|418886012|ref|ZP_13440162.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1150]
gi|418891363|ref|ZP_13445480.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1176]
gi|418894177|ref|ZP_13448278.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1057]
gi|418897139|ref|ZP_13451212.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|418900108|ref|ZP_13454167.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1214]
gi|418902996|ref|ZP_13457037.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1770]
gi|418904905|ref|ZP_13458934.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|418908514|ref|ZP_13462522.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG149]
gi|418911398|ref|ZP_13465381.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG547]
gi|418913911|ref|ZP_13467883.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|418916586|ref|ZP_13470547.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1267]
gi|418919534|ref|ZP_13473480.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIGC348]
gi|418922391|ref|ZP_13476308.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1233]
gi|418924958|ref|ZP_13478861.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG2018]
gi|418928044|ref|ZP_13481930.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1612]
gi|418930754|ref|ZP_13484602.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1750]
gi|418933657|ref|ZP_13487481.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIGC128]
gi|418981624|ref|ZP_13529339.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1242]
gi|418985263|ref|ZP_13532952.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1500]
gi|418987625|ref|ZP_13535298.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1835]
gi|418990611|ref|ZP_13538272.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1096]
gi|302332430|gb|ADL22623.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
JKD6159]
gi|315129397|gb|EFT85390.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
CGS03]
gi|315194338|gb|EFU24730.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
CGS00]
gi|315197698|gb|EFU28033.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
CGS01]
gi|377696275|gb|EHT20631.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1165]
gi|377696648|gb|EHT21003.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1114]
gi|377698525|gb|EHT22873.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1057]
gi|377705190|gb|EHT29498.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1214]
gi|377707105|gb|EHT31399.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1500]
gi|377707444|gb|EHT31737.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1242]
gi|377711663|gb|EHT35892.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1605]
gi|377716018|gb|EHT40203.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1769]
gi|377716621|gb|EHT40803.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1750]
gi|377719413|gb|EHT43583.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1835]
gi|377722733|gb|EHT46858.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1096]
gi|377724776|gb|EHT48891.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG547]
gi|377727310|gb|EHT51417.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1150]
gi|377732320|gb|EHT56371.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1176]
gi|377732863|gb|EHT56913.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1213]
gi|377735714|gb|EHT59744.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1233]
gi|377737956|gb|EHT61965.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1612]
gi|377742011|gb|EHT65996.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1770]
gi|377746253|gb|EHT70224.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG2018]
gi|377751091|gb|EHT75025.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG1267]
gi|377755853|gb|EHT79751.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIG149]
gi|377757413|gb|EHT81301.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIGC340D]
gi|377761918|gb|EHT85787.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIGC341D]
gi|377766445|gb|EHT90278.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIGC345D]
gi|377767499|gb|EHT91297.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIGC348]
gi|377771437|gb|EHT95191.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIGC128]
gi|377772083|gb|EHT95836.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CIGC93]
Length = 592
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 193/341 (56%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+
Sbjct: 1 MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVIS 60
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I FL+SS +E + + G I+ L+V+PERF N FL
Sbjct: 61 PLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFL 120
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT
Sbjct: 121 NMLQRIK-IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQ 178
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+ L I ++ I+ + R NL V N +R ++ + H I+
Sbjct: 179 QDIREKLNIAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIY 231
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L I YH+G+ K+R Q F ++++VVVAT AFGMG+D
Sbjct: 232 CSTRK-QVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGID 290
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 291 KSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|385781048|ref|YP_005757219.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 11819-97]
gi|364522037|gb|AEW64787.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 11819-97]
Length = 592
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 193/341 (56%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+
Sbjct: 1 MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVIS 60
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I FL+SS +E + + G I+ L+V+PERF N FL
Sbjct: 61 PLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFL 120
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT
Sbjct: 121 NMLQRIK-IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQ 178
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+ L I ++ I+ + R NL V N +R ++ + H I+
Sbjct: 179 QDIREKLNIAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIY 231
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L I YH+G+ K+R Q F ++++VVVAT AFGMG+D
Sbjct: 232 CSTRK-QVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGID 290
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 291 KSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|253580372|ref|ZP_04857638.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848465|gb|EES76429.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 629
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 199/335 (59%), Gaps = 11/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYD+FR+GQ ++ +L+ + + ++PTGAGKS+CYQ+PA++L G+T+V+ PL++
Sbjct: 9 LKTYFGYDTFREGQESVVESILEHRDVLAIMPTGAGKSICYQVPALMLSGITIVISPLIS 68
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ++ L IH F++SS ++++ + L G K+++V+PER N +FL F
Sbjct: 69 LMQDQVKALNEAGIHAAFINSSLSESQISKALYLAAGGRYKIIYVAPERLENYEFLE-FA 127
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
IS+V VDEAHC+S+W +FRPSY+++ ++ + A TATAT D++
Sbjct: 128 RQVEISMVTVDEAHCISQWGQDFRPSYVKI-VDFVKNLPGRPIVSAFTATATEEVKNDIL 186
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L++ ++ R NL SV N R+ + +V + H + I+ S +
Sbjct: 187 CTLKLEDPKVVITGFDRKNLYYSVE---NIRR--KDDFVMDYIDRHPTESG--IIYCSTR 239
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
D + L ++V YH+G+ + R + Q+ F ++ V++AT AFGMG+DK +V
Sbjct: 240 K-NVDNLFELLFQKGVAVTRYHAGLNNETRKKNQDDFIYDRTPVIIATNAFGMGIDKSNV 298
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
VIHY++P+S+E Y QE GRAGRDG S C L
Sbjct: 299 RYVIHYNMPQSMENYYQEAGRAGRDGENSQCVLLF 333
>gi|389693380|ref|ZP_10181474.1| ATP-dependent DNA helicase RecQ [Microvirga sp. WSM3557]
gi|388586766|gb|EIM27059.1| ATP-dependent DNA helicase RecQ [Microvirga sp. WSM3557]
Length = 604
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/360 (38%), Positives = 206/360 (57%), Gaps = 19/360 (5%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L V+G+ SFR+GQ E ++ VL + + V+PTGAGKSLCYQ+P + GLT+VV PL
Sbjct: 6 KILHDVFGFPSFREGQEEIVRAVLAGEDVLAVMPTGAGKSLCYQLPTLAREGLTIVVSPL 65
Query: 251 VALMIDQ---LRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
+ALM DQ LRH + G L+S+ P+E + ++ G +++L+ SPER N
Sbjct: 66 IALMRDQVAALRHFG--VEAGSLNSANDPDENRRVVDSVREGRMRLLYASPERLANTG-T 122
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
+ + A + ++++ +DEAHCVS+W H+FRP Y L +R RL +A+TATA T
Sbjct: 123 TEWLARAGVNMLAIDEAHCVSQWGHDFRPEYAML--GEVRQRLGNVQTIALTATADVATR 180
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+M L L R NL+L++ ++R+ ++FSF +H +
Sbjct: 181 GDIMHRLFEEEPRLFIHGFDRPNLRLAMQAKEHSRR--------QLFSFLDKHRHESGIV 232
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
T+ ++ L YH+G+P DR++ Q++F V+VATVAFGMG+D
Sbjct: 233 YCSSRDATERLADSLSQAGYRALPYHAGMPQGDRAKNQDIFLQEDGVVMVATVAFGMGID 292
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGR-LSYCHLF-LDDITYFRLRSLMYSDGVDE 545
K DV V H +LP+S+E Y QEIGRAGRDG L+ LDD+ RL+ + SD DE
Sbjct: 293 KPDVRFVAHAALPKSIEAYYQEIGRAGRDGAPADTLTLYGLDDMRLRRLQ-IEQSDASDE 351
>gi|375109707|ref|ZP_09755949.1| ATP-dependent DNA helicase [Alishewanella jeotgali KCTC 22429]
gi|374570229|gb|EHR41370.1| ATP-dependent DNA helicase [Alishewanella jeotgali KCTC 22429]
Length = 605
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 211/370 (57%), Gaps = 15/370 (4%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E L +L+ +GY S+R+GQ E I VL + ++LPTG GKSLCYQ+PA+ LPG+TLV
Sbjct: 3 EQLLAVLKQSFGYSSWRNGQQEIISAVLQGRDCFVLLPTGGGKSLCYQLPALQLPGVTLV 62
Query: 247 VCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL++LM DQ+ L I +++SS E V + + ++ G +K+L+V+PER L
Sbjct: 63 VSPLMSLMKDQVDSLRANGIAAAYVNSSLSREAVLDVLNQLRYGELKLLYVAPERLLQPS 122
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
FL +SL +DEAHC+S+W H+FRP YM L S L+ R +A+TATA
Sbjct: 123 FLERLQEVG-VSLFAIDEAHCISQWGHDFRPDYMAL--SQLKQRFPGVPFIALTATADPA 179
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
T +D++ L + + + + R N++ +V E+ ++++ ++ + ++
Sbjct: 180 TQQDILQQLGLSNPYIHRGSFDRPNIRYTV--------QEKFRPLEQLLAYLKQQENQSG 231
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ + D ++ L + V +YH+G + +R R+Q+ F + I ++VATVAFGMG
Sbjct: 232 IIYCSSRRKVDELTAQLQERGYKVAAYHAGHDSTERQRVQDAFKRDDINLIVATVAFGMG 291
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD---G 542
+DK ++ V+H+ LP ++E Y QE GRAGRDG + L D R++ + ++ G
Sbjct: 292 VDKPNIRFVVHFELPRTIEAYYQETGRAGRDGVAAEAVLLFDPADIGRMKRWLEAEENPG 351
Query: 543 VDEYAINKFL 552
E +FL
Sbjct: 352 RAEVVWQRFL 361
>gi|257869816|ref|ZP_05649469.1| ATP-dependent DNA helicase RecQ [Enterococcus gallinarum EG2]
gi|357051009|ref|ZP_09112205.1| ATP-dependent DNA helicase RecQ [Enterococcus saccharolyticus 30_1]
gi|257803980|gb|EEV32802.1| ATP-dependent DNA helicase RecQ [Enterococcus gallinarum EG2]
gi|355380634|gb|EHG27770.1| ATP-dependent DNA helicase RecQ [Enterococcus saccharolyticus 30_1]
Length = 588
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/432 (33%), Positives = 233/432 (53%), Gaps = 36/432 (8%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
+++ ++LR +GY SFR+GQ I +L ++ + ++PTG GKS+CYQ+PA++L GLTLV
Sbjct: 2 QSINQVLRDKFGYTSFREGQESIINAILSHQNVLGIMPTGGGKSVCYQLPALLLDGLTLV 61
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+ PL++LM DQ+ L + I +++S+ E+ + +R G IK+L+V+PER +
Sbjct: 62 ISPLISLMKDQVDALNDMGIPAAYINSTLSAPEINQRLRQASKGEIKLLYVAPERLESDH 121
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
F + ISL+ VDEAHC+S+W H+FRPSY+RL A + + ++A+TATAT
Sbjct: 122 FRELLRYVP-ISLLAVDEAHCISQWGHDFRPSYLRL-AETIHSFDQRPTVVALTATATPK 179
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
+D+ L IP N ++ R+NL V + ++ Y + ++ + +K
Sbjct: 180 VAQDIERLLLIPPENQVKTGFARENLSFEVI------KEQKDTY---LLTYLKMNKGQSG 230
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ + E + I R L SI+ YH G+ ++R++ QE F ++++V+VAT AFGMG
Sbjct: 231 IIYASTRKEVERIYRLLKQQSINAGRYHGGLTEEERTQNQEDFLFDRLQVMVATNAFGMG 290
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR------------LSYCHLFLD----DI 529
++K +V VIH +P +LE Y QE GRAGRDG L F+D DI
Sbjct: 291 INKSNVRFVIHAQIPGNLESYYQEAGRAGRDGEPSEAILLYAPQDLQIQQFFIDQSESDI 350
Query: 530 T-----YFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEV 584
Y +LR M G + + +++ + F G+ + + E + DI E
Sbjct: 351 QYRQNEYLKLRE-MSQYGHTQMCLQRYILRYFGEDGPDCGRCSNCLDE--REQVDITVET 407
Query: 585 MLTLLTCLELGE 596
L +GE
Sbjct: 408 QKVLSCVKRMGE 419
>gi|375362585|ref|YP_005130624.1| ATP-dependent DNA helicase RecQ [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371568579|emb|CCF05429.1| ATP-dependent DNA helicase RecQ [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 592
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 195/337 (57%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GYDS R GQ +AI+ V + +K+T+ ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +++S+Q ++ E + ++ GA ++ +++PER +++F+ I
Sbjct: 68 ISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSSEFIHI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ + LV +DEAHC+S+W H+FRPSY + L I+A+TATAT D
Sbjct: 128 LQNIT-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFNELKEPPVIIALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I + R+NL V + G N+ Y+++ +KH + +
Sbjct: 186 ICKQLHIKKEQTVYTGFARENLTFKV-VKGENKDRFIERYLEK-------NKHEAGIIYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
ETD + L + I+ YH G+ DR QE F +++I+V+VAT AFGMG+DK
Sbjct: 238 ATRKETDRLYEKLKRSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLNSECVLLF 334
>gi|163803190|ref|ZP_02197072.1| ATP-dependent DNA helicase RecQ [Vibrio sp. AND4]
gi|159173011|gb|EDP57845.1| ATP-dependent DNA helicase RecQ [Vibrio sp. AND4]
Length = 611
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/346 (35%), Positives = 204/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L+ V+GY +FRDGQ I ++ + ++++LPTG GKSLCYQIPA++ G+T+V+ PL
Sbjct: 18 RVLKDVFGYQAFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITIVISPL 77
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ E + + G +K+++VSPER L DF+
Sbjct: 78 ISLMKDQVDQLKANGVAAECINSTMPRETLLSVYNRMHTGHLKLVYVSPERVLMRDFIER 137
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L S++ VDEAHC+S+W H+FRP Y L L+ + + +A+TATA T RD
Sbjct: 138 LENLPL-SMIAVDEAHCISQWGHDFRPEYAAL--GQLKRQFSHVPFMALTATADDATRRD 194
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
++ L++ + + R N++ ++ E+ V +V + + K +
Sbjct: 195 ILERLQLNNPEVYLGSFDRPNIRYNLV--------EKHKPVSQVVRYLDTQKGNCGIIYC 246
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC+N I YH+G+ A +R+ +Q+ F + I++VVATVAFGMG++K
Sbjct: 247 GSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQDAFQRDDIQIVVATVAFGMGINKP 306
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 307 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLR 352
>gi|18309325|ref|NP_561259.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens str. 13]
gi|18144001|dbj|BAB80049.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
Length = 724
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 197/338 (58%), Gaps = 15/338 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ YGY FR GQ E I +++ + ++PTG GKS+CYQIPA+IL G+T+V+ PL+
Sbjct: 7 ILKSFYGYSEFRKGQEEIINEIINGNDVVAIMPTGGGKSICYQIPALILDGVTVVISPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + + I +++S+ EE+ + ++ G IK+L+V+PER + +FL++
Sbjct: 67 SLMKDQVDAINSMGIESAYINSTLSNEEINNIFQSVKDGHIKILYVAPERLESMEFLNLV 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTLR 368
+ IS V VDEAHCVS+W H+FR SY + +LLR R + A TATAT +
Sbjct: 127 SNID-ISQVAVDEAHCVSQWGHDFRSSYKFIGRFINLLRKR---PVVSAFTATATEEVRK 182
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D++ LE+ + RDNL++ + N ++ Y+ + + +K +
Sbjct: 183 DIVKLLELNDPKVFVSGFDRDNLKIIIEKGVN-----KAHYI---LDYLKENKDVSGIIY 234
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
E D + + I YH+G+ ++R + QE F +K+ V+VAT AFGMG+DK
Sbjct: 235 CATRKEVDYLCELINSRGIGCTKYHAGLSDEERKKNQEDFVFDKVSVMVATNAFGMGIDK 294
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ VIH ++P+++E Y QEIGRAGRDG S C L
Sbjct: 295 PNIRYVIHNNMPKNIEGYYQEIGRAGRDGEKSECILIF 332
>gi|168212751|ref|ZP_02638376.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens CPE str.
F4969]
gi|170715796|gb|EDT27978.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens CPE str.
F4969]
Length = 724
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 197/338 (58%), Gaps = 15/338 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ YGY FR GQ E I +++ + ++PTG GKS+CYQIPA+IL G+T+V+ PL+
Sbjct: 7 ILKSFYGYSEFRKGQEEIINEIINGNDVVAIMPTGGGKSICYQIPALILDGVTVVISPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + + I +++S+ EE+ + ++ G IK+L+V+PER + +FL++
Sbjct: 67 SLMKDQVDAINSMGIESAYINSTLSNEEINNIFQSVKDGHIKILYVAPERLESMEFLNLV 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTLR 368
+ IS V VDEAHCVS+W H+FR SY + +LLR R + A TATAT +
Sbjct: 127 SNID-ISQVAVDEAHCVSQWGHDFRSSYKFIGRFINLLRKR---PVVSAFTATATEEVRK 182
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D++ LE+ + RDNL++ + N ++ Y+ + + +K +
Sbjct: 183 DIVKLLELNDPKVFVSGFDRDNLKIIIEKGVN-----KAHYI---LDYLKENKDVSGIIY 234
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
E D + + I YH+G+ ++R + QE F +K+ V+VAT AFGMG+DK
Sbjct: 235 CATRKEVDYLCELINSRGIGCTKYHAGLSDEERKKNQEDFVFDKVSVMVATNAFGMGIDK 294
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ VIH ++P+++E Y QEIGRAGRDG S C L
Sbjct: 295 PNIRYVIHNNMPKNIEGYYQEIGRAGRDGEKSECILIF 332
>gi|343506824|ref|ZP_08744288.1| ATP-dependent DNA helicase RecQ [Vibrio ichthyoenteri ATCC 700023]
gi|342801358|gb|EGU36830.1| ATP-dependent DNA helicase RecQ [Vibrio ichthyoenteri ATCC 700023]
Length = 612
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 206/347 (59%), Gaps = 18/347 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY FR GQ + I+ + + +++++PTG GKSLCYQ+PA++ GLTLV+ PL+
Sbjct: 20 VLEQVFGYQQFRSGQEQVIEAAIQGQDSLVIMPTGGGKSLCYQVPALVREGLTLVISPLI 79
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + ++S+ E++ + GA+K+++VSPER L DF+
Sbjct: 80 SLMKDQVDQLKADGVAAECVNSTMSREDLISVYNRMNSGALKLVYVSPERVLMRDFIERL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
SL S++ VDEAHC+S+W H+FRP Y L L+ +A+TATA T D+
Sbjct: 140 QGLSL-SMIAVDEAHCISQWGHDFRPEYASL--GQLKHYFPHVPFMALTATADDATRNDI 196
Query: 371 MSALEI--PLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+S L++ PL+ L + R N++ ++ E+ V ++ + + K + +
Sbjct: 197 VSRLQLVDPLNYL--GSFDRPNIRYTLL--------EKHKPVSQIIRYLDTQKGHCGIIY 246
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
G + ++++ LC+N I SYH+G+ A +R+ +QE F + I++VVATVAFGMG++K
Sbjct: 247 CGSRKKVEMVTEKLCNNHIRAASYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINK 306
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V H+ +P ++E Y QE GRAGRDG + + D DI++ R
Sbjct: 307 PNVRFVAHFDIPRNIESYYQETGRAGRDGLPAEAVMLYDPADISWLR 353
>gi|399887480|ref|ZP_10773357.1| ATP-dependent DNA helicase [Clostridium arbusti SL206]
Length = 722
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/335 (38%), Positives = 198/335 (59%), Gaps = 11/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ YGY FR Q I +L K T+ V+PTG GKS+CYQIPA++ G+T+V+ PL++
Sbjct: 8 LQEYYGYKEFRKSQNSVIDSILCGKDTLAVMPTGGGKSICYQIPALLFDGVTIVISPLIS 67
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ ++ + I+ +++SS +E E I + IK+L+++PER + +F +I
Sbjct: 68 LMKDQVDNIKDLGINAEYINSSLNFKETQEVIEKLNNNEIKLLYLAPERLESVEFCNIMQ 127
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ IS V VDEAHCVS+W H+FR SY R + ++ + A TATAT + +D++
Sbjct: 128 TLN-ISQVAVDEAHCVSQWGHDFRTSY-RYISKFVKTLSKRPIVTAFTATATESVRKDII 185
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
+E+ + R+NL++++ L R YV+E + I+ S +
Sbjct: 186 KLIELNNPGVFISGFDRENLKINI-LKIAGRLKYTLNYVNE------NRDQSGIIYASTR 238
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E D I L +N+IS YH+G+ +R + QE F +++ V+VAT AFGMG+DK +V
Sbjct: 239 K-EVDNIYENLIENNISASRYHAGLSDSERKQNQEDFVYDRVNVMVATNAFGMGIDKSNV 297
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
VIHY++P+++E Y QEIGRAGRDG S C L
Sbjct: 298 RFVIHYNMPKNIESYYQEIGRAGRDGEKSECILLF 332
>gi|423261207|ref|ZP_17242109.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T00C01]
gi|423267342|ref|ZP_17246324.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T12C05]
gi|387774449|gb|EIK36560.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T00C01]
gi|392698045|gb|EIY91228.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T12C05]
Length = 601
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 200/335 (59%), Gaps = 12/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I ++ KK +++++PTG GKS+CYQ+PA+++ G +V+ PL++
Sbjct: 5 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIF 310
LM DQ+ L I G L+SS E A R G +K+L++SPE+ L+ AD+L
Sbjct: 65 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKLLSEADYL--- 121
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+SL VDEAHC+S+W H+FRP Y R+ LR + ++A+TATA T D+
Sbjct: 122 LRDMTLSLFAVDEAHCISQWGHDFRPEYARM--GFLRNQFPNVPMIALTATADKITREDI 179
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL LSV G + + A +D + S Y + S
Sbjct: 180 VRQLQLRQPQIFISSFDRPNLSLSVK-RGYQPKEKSKAIIDFITRHRGESGIVYCMSRS- 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L + I YH+G+ A+ R+ Q+ F +++I VV AT+AFGMG+DK +
Sbjct: 238 ---KTETVAQMLQKHGIRCGVYHAGLSARQRNETQDDFINDRIEVVCATIAFGMGIDKSN 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY+LP+S+E + QEIGRAGRDG S LF
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILF 329
>gi|421731427|ref|ZP_16170553.1| ATP-dependent DNA helicase RecQ [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|451346724|ref|YP_007445355.1| ATP-dependent DNA helicase RecQ [Bacillus amyloliquefaciens IT-45]
gi|407075581|gb|EKE48568.1| ATP-dependent DNA helicase RecQ [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|449850482|gb|AGF27474.1| ATP-dependent DNA helicase RecQ [Bacillus amyloliquefaciens IT-45]
Length = 592
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 195/337 (57%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GYDS R GQ +AI+ V + +K+T+ ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +++S+Q ++ E + ++ GA ++ +++PER +++F+ I
Sbjct: 68 ISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSSEFIHI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ + LV +DEAHC+S+W H+FRPSY + L I+A+TATAT D
Sbjct: 128 LQNIT-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFNELKEPPVIIALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I + R+NL V + G N+ Y+++ +KH + +
Sbjct: 186 ICKQLHIKKEQTVYTGFARENLTFKV-VKGENKDRFIERYLEK-------NKHEAGIIYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
ETD + L + I+ YH G+ DR QE F +++I+V+VAT AFGMG+DK
Sbjct: 238 ATRKETDRLYEKLKRSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLNSECVLLF 334
>gi|294782852|ref|ZP_06748178.1| ATP-dependent DNA helicase RecQ [Fusobacterium sp. 1_1_41FAA]
gi|294481493|gb|EFG29268.1| ATP-dependent DNA helicase RecQ [Fusobacterium sp. 1_1_41FAA]
Length = 606
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 195/333 (58%), Gaps = 11/333 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L+ YGYD+FR+GQ + I +L K++ + ++ TGAGKS+CYQ+PA++ GLT+V+ PL
Sbjct: 7 RILKEYYGYDNFREGQEKIIDAILQKRNVLGIMTTGAGKSICYQVPALVFKGLTIVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +L+S+ +E + + I+ G K+L++SPER N FL+
Sbjct: 67 ISLMKDQVDSLKLIGIDASYLNSTLTSDEYNKILFKIKKGQTKLLYISPERLENKAFLN- 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECI--LAMTATATTTTL 367
F T I++VVVDEAHCVS+W NFR SY+R+ A +R + I LA TATAT
Sbjct: 126 FIKTIKIAMVVVDEAHCVSQWGENFRKSYLRI-ADFIRYITDGVKIQTLAFTATATPKIK 184
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE---VFSFHRSSKHYY 424
D++ L+I + RDN+ V +N ++ +D + + R K
Sbjct: 185 VDIIDKLKIENPFVFVDNFNRDNIYFKVI---DNTGLDKDLNIDSKPFIIDYLRKHKGKS 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ D I YL SV YH G+ ++R + Q LF ++ + ++VAT AFGM
Sbjct: 242 GIIYCSTRKNVDDIYSYLVSFDRSVTKYHGGMTKEEREKNQNLFLNDDVEIMVATNAFGM 301
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G++K ++ VIH ++P LE Y QE GRAGRDG
Sbjct: 302 GINKSNIRYVIHANIPADLESYYQEAGRAGRDG 334
>gi|19703913|ref|NP_603475.1| ATP-dependent DNA helicase recQ [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19714081|gb|AAL94774.1| ATP-dependent DNA helicase recQ [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 614
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 194/333 (58%), Gaps = 11/333 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ YGYD+FR+GQ + I +L+K++ + ++ TGAGKS+CYQIPA+I GLT+++ PL
Sbjct: 15 KILKEYYGYDNFREGQEKIIDAILEKRNVLGIMTTGAGKSICYQIPALIFEGLTIIISPL 74
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +L+S+ +E + + I+ G IK+L++SPER N FL+
Sbjct: 75 ISLMKDQVDSLRLIGIEASYLNSALTSDEYNKILFRIKRGKIKLLYISPERLENKFFLN- 133
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTL 367
F T IS+VVVDEAHCVS+W NFR SY+R+ L ++ LA TATAT
Sbjct: 134 FIKTVKISMVVVDEAHCVSQWGENFRRSYLRIADFVKYLSGETQIQT-LAFTATATPKIK 192
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE---VFSFHRSSKHYY 424
D++ L I + RDN+ V +N ++ +D + + R K
Sbjct: 193 VDIIEKLNIINPFIYIDYFNRDNIYFKVV---DNSGLDKDLDIDSKPFIIDYLRKHKGKS 249
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ D I YL SV YH G+ ++R + Q+LF + I ++VAT AFGM
Sbjct: 250 GIIYCSTRKNVDDIYSYLVGFDRSVTKYHGGMSKEEREKNQKLFLDDDIEIMVATNAFGM 309
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G++K ++ VIH ++P LE Y QE GRAGRDG
Sbjct: 310 GINKSNIRYVIHANIPADLESYYQEAGRAGRDG 342
>gi|268592895|ref|ZP_06127116.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri DSM 1131]
gi|291311686|gb|EFE52139.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri DSM 1131]
Length = 608
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 201/355 (56%), Gaps = 34/355 (9%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L +GY SFR GQ I +LD + ++++PTG GKSLCYQ+PA++ G+TLVV PL+
Sbjct: 16 VLNSTFGYQSFRPGQDAVIGAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLI 75
Query: 252 ALMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
+LM DQ+ L +HG L+SSQ +E + + L G IK+L+V+PER L FLS
Sbjct: 76 SLMKDQVDQLR--LHGVNAACLNSSQTSQEQRQIMELCSQGEIKLLYVAPERLLTDYFLS 133
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+ I+L+ VDEAHC+S+W H+FRP Y L LR L ++A+TATA TT
Sbjct: 134 QLAGWN-ITLLAVDEAHCISQWGHDFRPEYRAL--GQLRQSLPNVPVMALTATADETTRA 190
Query: 369 DVMSALEI--PLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV------DEVFSFHRSS 420
D++ LE+ PL V +S +R N R V D+++ F +
Sbjct: 191 DIIRLLELHEPL----------------VHVSSFDRPNIRYTLVEKYKPLDQLWFFIKGQ 234
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480
K + + + + L +SV +YH+G+ A R +Q+ F + ++VVVATV
Sbjct: 235 KGKAGIVYCNSRSKVEETTERLQKRGLSVAAYHAGLDAAQREWVQDAFLKDNLQVVVATV 294
Query: 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
AFGMG++K +V V H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 295 AFGMGINKSNVRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLR 349
>gi|387779856|ref|YP_005754654.1| putative ATP-dependent DNA helicase [Staphylococcus aureus subsp.
aureus LGA251]
gi|344176958|emb|CCC87422.1| putative ATP-dependent DNA helicase [Staphylococcus aureus subsp.
aureus LGA251]
Length = 593
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 10 FGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKD 69
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I FL+SS +E + + G I+ L+V+PERF N FL++
Sbjct: 70 QVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIK- 128
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT +D+ L
Sbjct: 129 IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQQDIREKLN 187
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ I+ + R NL V N +R ++ + H I+ S + +
Sbjct: 188 IAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIYCSTRK-QV 239
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F ++++VVVAT AFGMG+DK +V VI
Sbjct: 240 EELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVI 299
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 300 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|261823379|ref|YP_003261485.1| ATP-dependent DNA helicase RecQ [Pectobacterium wasabiae WPP163]
gi|261607392|gb|ACX89878.1| ATP-dependent DNA helicase RecQ [Pectobacterium wasabiae WPP163]
gi|385873847|gb|AFI92367.1| ATP-dependent DNA helicase RecQ [Pectobacterium sp. SCC3193]
Length = 608
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 203/347 (58%), Gaps = 16/347 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++LR +GY FR GQ E I L + ++++PTG GKSLCYQIPA+++ GLTLVV PL
Sbjct: 15 QVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + L+S+Q E+ E + + G IK+L+++PER FL
Sbjct: 75 ISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLTTDSFLD- 133
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
A ISL+ VDEAHC+S+W H+FRP Y L ++ R +A+TATA TT D
Sbjct: 134 HLAHWQISLIAVDEAHCISQWGHDFRPEYRAL--GQIKQRFPHLPFIALTATADETTRND 191
Query: 370 VMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
++ L++ S LIQ + R N++ ++ E+ +D+++ F + + +
Sbjct: 192 IVRLLDLQ-SPLIQISSFDRPNIRYTLV--------EKFKPLDQLWMFVQGQRGKSGIIY 242
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ IS L +S +YH+G+ + R+++QE F + ++VVVATVAFGMG++K
Sbjct: 243 CNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGINK 302
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLR 349
>gi|157963641|ref|YP_001503675.1| ATP-dependent DNA helicase RecQ [Shewanella pealeana ATCC 700345]
gi|157848641|gb|ABV89140.1| ATP-dependent DNA helicase RecQ [Shewanella pealeana ATCC 700345]
Length = 607
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 209/357 (58%), Gaps = 13/357 (3%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
+ S + L L+ V+GY +FR+GQ E I+ + + ++++PTG GKSLCYQ+PA++LPG
Sbjct: 7 DTSVDQLSSTLQSVFGYRTFREGQREVIEQICAGQDCLVIMPTGGGKSLCYQLPALVLPG 66
Query: 243 LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
LT+VV PL++LM DQ+ L + +L+SS EE + ++ ++ G +K+L+VSPER
Sbjct: 67 LTVVVSPLISLMKDQVDSLIQTGVSAAYLNSSLPREESLQVLQKMRYGELKLLYVSPERL 126
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L A F+ + +SL +DEAHC+S+W H+FRP Y L LR + I+A+TAT
Sbjct: 127 LQASFIDRLHELN-VSLFAIDEAHCISQWGHDFRPEYAAL--GRLRQQFPQVPIMALTAT 183
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
A T D+ L I +L+ R N++ +V+ N N+ +VD +
Sbjct: 184 ADKATRADICERLTITPHSLLTSFD-RPNIRYTVA-EKLNAANQLRQFVDA------QNG 235
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I+ S + D ++ L ++YH+G ++R+ +Q+ F +++ +VVATVA
Sbjct: 236 ASGIVYCSSRR-RVDEVAERLRLQGHQAEAYHAGKTQEERAEVQDKFLKDQLDIVVATVA 294
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
FGMG++K +V V+HY +P+S+E Y QE GRAGRDG S + D R+R L+
Sbjct: 295 FGMGINKSNVRYVVHYDIPKSVESYYQETGRAGRDGLDSEALMLFDPADIGRVRHLI 351
>gi|423270795|ref|ZP_17249766.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T00C42]
gi|423274619|ref|ZP_17253565.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T12C13]
gi|392698719|gb|EIY91901.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T00C42]
gi|392704877|gb|EIY98011.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T12C13]
Length = 601
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 199/335 (59%), Gaps = 12/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I ++ KK +++++PTG GKS+CYQ+PA+++ G +V+ PL++
Sbjct: 5 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 64
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIF 310
LM DQ+ L I G L+SS E A R G +K+L++SPE+ L+ AD+L
Sbjct: 65 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKLLSEADYL--- 121
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+SL VDEAHC+S+W H+FRP Y R+ LR + ++A+TATA T D+
Sbjct: 122 LRDMTLSLFAVDEAHCISQWGHDFRPEYARM--GFLRNQFPNVPMIALTATADKITREDI 179
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL LSV G + + A VD + S Y + S
Sbjct: 180 VRQLQLRQPQIFISSFDRPNLSLSVK-RGYQPKEKSKAIVDFITRHRGESGIVYCMSRS- 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L + I YH+G+ A+ R Q+ F +++I VV AT+AFGMG+DK +
Sbjct: 238 ---KTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 294
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY+LP+S+E + QEIGRAGRDG S LF
Sbjct: 295 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILF 329
>gi|418280273|ref|ZP_12893251.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21178]
gi|365169094|gb|EHM60416.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21178]
Length = 593
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 10 FGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKD 69
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I FL+SS +E + + G I+ L+V+PERF N FL++
Sbjct: 70 QVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIK- 128
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT +D+ L
Sbjct: 129 IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQQDIREKLN 187
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ I+ + R NL V N +R ++ + H I+ S + +
Sbjct: 188 IAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIYCSTRK-QV 239
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F ++++VVVAT AFGMG+DK +V VI
Sbjct: 240 EELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVI 299
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 300 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|385265047|ref|ZP_10043134.1| ATP-dependent DNA helicase RecQ [Bacillus sp. 5B6]
gi|385149543|gb|EIF13480.1| ATP-dependent DNA helicase RecQ [Bacillus sp. 5B6]
Length = 592
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 195/337 (57%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GYDS R GQ +AI+ V + +K+T+ ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYDSLRAGQKQAIQSVTEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +++S+Q ++ E + ++ GA ++ +++PER +++F+ I
Sbjct: 68 ISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSSEFIHI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ + LV +DEAHC+S+W H+FRPSY + L I+A+TATAT D
Sbjct: 128 LQNIT-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFNELKEPPVIIALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I + R+NL V + G N+ Y+++ +KH + +
Sbjct: 186 ICKQLHIKKEQTVYTGFARENLTFKV-VKGENKDRFIERYLEK-------NKHEAGIIYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
ETD + L + I+ YH G+ DR QE F +++I+V+VAT AFGMG+DK
Sbjct: 238 ATRKETDRLYEKLKRSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLNSECVLLF 334
>gi|226326677|ref|ZP_03802195.1| hypothetical protein PROPEN_00530 [Proteus penneri ATCC 35198]
gi|225204898|gb|EEG87252.1| ATP-dependent DNA helicase RecQ [Proteus penneri ATCC 35198]
Length = 600
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 201/353 (56%), Gaps = 30/353 (8%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR +GY FR GQ E I + + ++V+PTG GKSLCYQIPA++L GLT+VV PL+
Sbjct: 7 ILRETFGYQQFRPGQQEVIHTITTGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 66
Query: 252 ALMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
+LM DQ+ L +HG +L+S+Q EE + Q G IK+L+++PER + FL
Sbjct: 67 SLMKDQVDQL--CLHGIEAAYLNSTQTREEQLDVQIRCQKGEIKLLYIAPERLMMESFLH 124
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+ L+ VDEAHC+S+W H+FRP Y + LLR + I+A+TATA TT
Sbjct: 125 QLVQWKPV-LLAVDEAHCISQWGHDFRPEYRGI--GLLRQYIADVPIIALTATADNTTRY 181
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV------DEVFSFHRSSKH 422
D+++ L LRD L + +S +R N R V D+++ F R K
Sbjct: 182 DIINQLV-----------LRDPL---IHISSFDRPNIRYTLVEKYKPLDQLWLFIRGQKG 227
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
+ + + + L +S+ YH+G+ R+++QE F + +++VVATVAF
Sbjct: 228 KSGIIYCNSRSKVEETAERLSKRGLSIAGYHAGMEIAQRAKVQEAFQRDDLQIVVATVAF 287
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
GMG++K +V V+H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 288 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMAWLR 340
>gi|404416333|ref|ZP_10998155.1| ATP-dependent DNA helicase RecQ [Staphylococcus arlettae CVD059]
gi|403491211|gb|EJY96734.1| ATP-dependent DNA helicase RecQ [Staphylococcus arlettae CVD059]
Length = 592
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 194/333 (58%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY++FR GQ E I ++D ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 9 FGYETFRPGQKEIISKIIDHRNVLGVLPTGGGKSICYQVPGLMLGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L I+ +L+SS ++ + + G ++ L+V+PERF N F+++ +
Sbjct: 69 QVDQLNAAGINAAYLNSSMTQKQQKAVEQELLRGEVQFLYVAPERFDNGYFVNLLQQLT- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + I+A+TATATT +D+M L
Sbjct: 128 IPLVAFDEAHCISKWGHDFRPSYQEVIHKVFALPQDF-AIVALTATATTEVQKDIMQRLN 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ I+ + R NL V N +R +V + H I+ S + +
Sbjct: 187 INKNDEIKTSTKRRNLVFKV-----NPTYQRQKFVLDYVKEHSDVAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + D +I YH+G+ K+R + Q F +++RVVVAT AFGMG+DK +V VI
Sbjct: 239 EELHEAFQDQNIQSTIYHAGLSNKEREQAQNDFVYDRVRVVVATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLNSDCILLFSE 331
>gi|384265648|ref|YP_005421355.1| putative ATP-dependent DNA helicase YocI [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387898642|ref|YP_006328938.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens Y2]
gi|380499001|emb|CCG50039.1| putative ATP-dependent DNA helicase YocI [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387172752|gb|AFJ62213.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens Y2]
Length = 592
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 195/337 (57%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GYDS R GQ +AI+ V + +K+T+ ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I +++S+Q ++ E + ++ GA ++ +++PER +++F+ I
Sbjct: 68 ISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSSEFIHI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ + LV +DEAHC+S+W H+FRPSY + L I+A+TATAT D
Sbjct: 128 LQNIT-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFNELKEPPVIIALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I + R+NL V + G N+ Y+++ +KH + +
Sbjct: 186 ICKQLHIKKEQTVYTGFARENLTFKV-VKGENKDRFIERYLEK-------NKHEAGIIYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
ETD + L + I+ YH G+ DR QE F +++I+V+VAT AFGMG+DK
Sbjct: 238 ATRKETDRLYEKLKRSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLNSECVLLF 334
>gi|399026913|ref|ZP_10728551.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
gi|398075677|gb|EJL66783.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
Length = 731
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 207/368 (56%), Gaps = 18/368 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+ F+ Q + I +L+KK+T +++PTG GKSLCYQ+PA+I G +VV PL+A
Sbjct: 12 LKKYFGFSQFKGLQEQVITSILNKKNTFVIMPTGGGKSLCYQLPALIQDGTAIVVSPLIA 71
Query: 253 LM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
LM +D +R L + H L+SS E+A+ + I G K+L+V+PE ++
Sbjct: 72 LMKNQVDAIRSLSSENGIAH--VLNSSLTKTEIAQVKKDITSGLTKLLYVAPESLTKEEY 129
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
++ F + IS V +DEAHC+SEW H+FRP Y L+ + +L I+ +TATAT
Sbjct: 130 VA-FLQSVPISFVAIDEAHCISEWGHDFRPEYRNLKNII--KQLGSVPIIGLTATATPKV 186
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D++ L++ +N + + R NL V N +++ ++ + H+ K I
Sbjct: 187 QEDILKNLDMSDANTFKASFNRPNLYYEVRTKTKNIESDIIRFIKQ----HKG-KSGIIY 241
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+S K ET I+ L N IS YH+G+ AK R++ Q++F + VVVAT+AFGMG+
Sbjct: 242 CLSRKKVET--IAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGI 299
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK DV VIH+ +P+SLE Y QE GRAGRDG +C + +L M V E
Sbjct: 300 DKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQ 359
Query: 547 AINKFLCQ 554
I L Q
Sbjct: 360 EIGFALLQ 367
>gi|332304550|ref|YP_004432401.1| ATP-dependent DNA helicase RecQ [Glaciecola sp. 4H-3-7+YE-5]
gi|332171879|gb|AEE21133.1| ATP-dependent DNA helicase RecQ [Glaciecola sp. 4H-3-7+YE-5]
Length = 599
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/350 (36%), Positives = 201/350 (57%), Gaps = 17/350 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD+FRDGQ E I+ +L K ++++PTG GKSLCYQIPA++L GLT+V+ PL+
Sbjct: 12 VLKNVFGYDAFRDGQREVIEQILQGKDVLVLMPTGGGKSLCYQIPALVLEGLTIVISPLI 71
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L + +++S+ EE+ R +Q G K+++V+PER + DF+
Sbjct: 72 ALMKDQVDALVASGVSAAYINSNLSNEEMLNVYRGMQDGRYKLIYVAPERLMQFDFIQRL 131
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + ++L VDEAHCVS W H+FR Y +L ++ + ++ +TATA TT D+
Sbjct: 132 HSLN-VALFAVDEAHCVSHWGHDFRKEYRQL--GQIKQQFPGVPVVGLTATADITTRSDI 188
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY--VDEVFSFHRSSKHYYILQI 428
+ L + + + + R N+ R N+ Y D+V + + I+
Sbjct: 189 LQQLALEQPFVFKGSFDRPNI----------RYNQLFKYKATDQVIQYVKQQDGSGIIYC 238
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + + D +S L I+ YH+G+ R +IQ F + + ++VATVAFGMG++K
Sbjct: 239 NSRK-KVDDLSIALARQGINCAGYHAGLEGPIRDKIQRDFIQDNVDIIVATVAFGMGINK 297
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
+V V+H+ LP S+E Y QE GRAGRDG + L D+ R+R +
Sbjct: 298 SNVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWI 347
>gi|429505463|ref|YP_007186647.1| ATP-dependent DNA helicase RecQ [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429487053|gb|AFZ90977.1| ATP-dependent DNA helicase RecQ [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 592
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 195/342 (57%), Gaps = 12/342 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
E LL +GYDS R GQ +AI+ V + +K+T+ ++PTG GKS+CYQIPA++ G T+
Sbjct: 3 EKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTI 62
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ+ L I +++S+Q ++ E + ++ GA ++ +++PER ++
Sbjct: 63 VISPLISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSS 122
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
+F+ I + + LV +DEAHC+S+W H+FRPSY + L I+A+TATAT
Sbjct: 123 EFIHILQNIT-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFNELKEPPVIIALTATATP 180
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L I + R+NL V + G N+ Y+++ +KH
Sbjct: 181 EVHDDICKQLHIKKEQTVYTGFARENLTFKV-VKGENKDRFIERYLEK-------NKHEA 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ + ETD + L I+ YH G+ DR QE F +++I+V+VAT AFGM
Sbjct: 233 GIIYTATRKETDRLYEKLKRGGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGM 292
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK ++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 293 GIDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLNSECVLLF 334
>gi|365961574|ref|YP_004943141.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium columnare ATCC
49512]
gi|365738255|gb|AEW87348.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium columnare ATCC
49512]
Length = 731
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 201/339 (59%), Gaps = 14/339 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L + L+ +G+ F+ Q + +K ++ +++T +++PTG GKSLCYQ+PA+I G+ +VV
Sbjct: 7 DLHKELKKYFGFSQFKGLQEQVVKSIVSRENTFVIMPTGGGKSLCYQLPALIQEGVAIVV 66
Query: 248 CPLVALMIDQLRHLPPVIHGG----FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
PL+ALM +Q+ L + G L+SS E+ + + I G K+L+V+PE
Sbjct: 67 SPLIALMKNQVDALRSLGSGDAIAHVLNSSLNKTEINQVKKDIASGFTKLLYVAPESLTK 126
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
+++ F IS V +DEAHC+SEW H+FRP Y LR +++RA L I+ +TATAT
Sbjct: 127 EEYID-FLKEHKISFVAIDEAHCISEWGHDFRPEYRNLR-NIIRA-LGEIPIIGLTATAT 183
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D++ LE+ +N+ + + R NL V N + + ++ + H+ K
Sbjct: 184 PKVQEDILKNLEMSDANVFKASFNRPNLFYEVRTKTKNVEADIIRFIKQ----HKG-KSG 238
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I +S K E I+ L N IS YH+G+ AK R++ Q++F ++ VVVAT+AFG
Sbjct: 239 VIYCLSRKKVEE--IAEVLKVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAFG 296
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
MG+DK DV VIH+ +P+SLE Y QE GRAGRDG +C
Sbjct: 297 MGIDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHC 335
>gi|170085093|ref|XP_001873770.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651322|gb|EDR15562.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 700
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 190/675 (28%), Positives = 311/675 (46%), Gaps = 97/675 (14%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAI-KMVLDKKSTMLVLPTGAGKSLCYQIPAM------- 238
E +L+ V+G+ SFR Q +AI ++++D ++ ++V PTG GKSL YQ+P +
Sbjct: 2 EKAREVLKDVFGFQSFRLSQEKAISRLIVDNENALVVFPTGGGKSLVYQVPGLCLDVSLQ 61
Query: 239 ------------ILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRL 285
I GLTLV+ PL+ALM DQ+ L ++ L S+Q PE
Sbjct: 62 ITFHVCSFIYSPIYQGLTLVISPLIALMKDQVDSLVSRGVNAASLDSTQPPERSKWIKAE 121
Query: 286 IQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL 345
+ G +K+L+V+PER N F+++ T ISL+ VDEAH S
Sbjct: 122 VLAGKMKILYVAPERLNNEGFVNMMTQVK-ISLLAVDEAH------------------SR 162
Query: 346 LRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNE 405
L+VE +L +TATAT + D+ S+ I + R NL L + ++ +
Sbjct: 163 FAVELDVERVLCLTATATPSVSADICSSFLIAKEGVFSTPVFRPNLSLRIEVAETLDEK- 221
Query: 406 RSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQ 465
+D V ++ I+ ++ + +T+ ++ YL + I YH+G+P+ R +IQ
Sbjct: 222 ----IDRVVPLLKTRTGPSIIYVTLQK-QTEEVANYLMPHGIDAMVYHAGLPSDRREKIQ 276
Query: 466 ELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
F +K VVV T+AFGMG+DK D+ VIH +P+SLE Y QE+GRAGRDG S C +F
Sbjct: 277 TAFMESKDGVVVCTIAFGMGIDKADIRQVIHLYMPKSLENYSQEVGRAGRDGVTSTCVMF 336
Query: 526 LDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVM 585
L + L D + + +L +V T G L + +DI+ V+
Sbjct: 337 LSSLDIPTLEGFCRGDTCSKQDLELWLQEVATKVPAPDGTL-DFNHYKQGKDYDIRANVL 395
Query: 586 LTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPT----LLADKDKMVATI--LKKSETK 639
LEL Y++ +T +F++ TP + +D ++ I + ++
Sbjct: 396 GLCYAHLELDH-GYIR-----AITPFYSFYEITPLNSSRIFSDNSQIGKVIRTYWRRKSA 449
Query: 640 QGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIV----EVPSDFC 695
G++ DI A+ G D++ + N ++ G + YT++ + +
Sbjct: 450 TGKHEIDIVDAASRAGVDRADMARHISNWELDGSAEVKASQVRARYTLLKPFEKTAASIR 509
Query: 696 ALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRG 755
AL+ + + + E V+KL ++ FA+D CL N+ +F
Sbjct: 510 ALADEMHTRMLKQEEDSVKKLRQVI---AFAID-------------DDCLAHNLAKHFGN 553
Query: 756 DDNCDVPNKI---------GQSSPFLRADIKVF----LQSNLNA---KFTPRAVARILHG 799
+D VPN + GQS F V +Q+ L+A + PR +AR+ G
Sbjct: 554 EDA--VPNDMCGSCTFCTTGQSVEFTLKSPTVVHPKQIQAVLDACPIRDDPRLLARMAFG 611
Query: 800 IASPAYPSTIWSKTH 814
+ SP + WS +H
Sbjct: 612 VTSPRLTANKWSTSH 626
>gi|418426841|ref|ZP_12999862.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VRS2]
gi|387720453|gb|EIK08363.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VRS2]
Length = 593
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 193/341 (56%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+
Sbjct: 2 MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVIS 61
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I FL+SS +E + + G I+ L+V+PERF N FL
Sbjct: 62 PLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFL 121
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT
Sbjct: 122 NMLQRIK-IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQ 179
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+ L I ++ I+ + R NL V N +R ++ + H I+
Sbjct: 180 QDIREKLNIAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIY 232
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L I YH+G+ K+R Q F ++++VVVAT AFGMG+D
Sbjct: 233 CSTRK-QVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 292 KSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|254440144|ref|ZP_05053638.1| ATP-dependent DNA helicase RecQ [Octadecabacter antarcticus 307]
gi|198255590|gb|EDY79904.1| ATP-dependent DNA helicase RecQ [Octadecabacter antarcticus 307]
Length = 677
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/346 (38%), Positives = 197/346 (56%), Gaps = 16/346 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LLR V+G+D FR GQ E ++ V D K+T+ ++PTG GKSLC+Q+PA++ G+T+V+ PL+
Sbjct: 6 LLRDVFGFDGFRPGQQEIVEAVTDGKNTLAIMPTGGGKSLCFQLPALVRDGVTVVISPLI 65
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+R L + G L+S EE E R ++ G +K+L+++PER L ++
Sbjct: 66 ALMRDQVRGLKEAGVIAGALTSGNTEEETDEVWRNLENGTLKLLYMAPER-LASNGAQRM 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ IS++ VDEAHCVS+W H+FRP Y+R+ LR L+V + A TATA T ++
Sbjct: 125 LRQAGISMIAVDEAHCVSQWGHDFRPDYLRI--GDLRRDLDVP-LAAFTATADEETRAEI 181
Query: 371 MSAL-EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L + L + R N+ L+ + R ++ +F + K +
Sbjct: 182 IEKLFDGQAPTLFLQGFDRPNIHLAFAAKDGPRA--------QIINFANARKEQAGIVYC 233
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G +T+ +++ L D S YH G+ A DR ++ F +V AT+AFGMG+DK
Sbjct: 234 GTRAKTETLAKALRDARHSACHYHGGMNADDRRNVERRFQQEDGLIVCATIAFGMGIDKP 293
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFR 533
D+ V H LP+S+E Y QEIGRAGRDG + DDI Y R
Sbjct: 294 DIRWVAHADLPKSIESYYQEIGRAGRDGAPAETLTLFGPDDIRYRR 339
>gi|386830363|ref|YP_006237017.1| putative ATP-dependent DNA helicase [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417798706|ref|ZP_12445866.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21310]
gi|418656226|ref|ZP_13218040.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-105]
gi|334275567|gb|EGL93856.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21310]
gi|375033948|gb|EHS27126.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-105]
gi|385195755|emb|CCG15364.1| putative ATP-dependent DNA helicase [Staphylococcus aureus subsp.
aureus HO 5096 0412]
Length = 593
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 194/341 (56%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+
Sbjct: 2 MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVIS 61
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I FL+SS +E + + G I+ L+V+PERF N FL
Sbjct: 62 PLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQHIEKELTSGNIQFLYVAPERFENRYFL 121
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT
Sbjct: 122 NLLQRIK-IHLVAFDEAHCISKWGHDFRPSYQNVISKVFMLPQDF-TIIALTATATVEVQ 179
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+ L I ++ I+ + R NL V N +R ++ + H I+
Sbjct: 180 QDIREKLNIAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIY 232
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L +I YH+G+ K+R Q F ++++VVVAT AFGMG+D
Sbjct: 233 CSTRK-QVEELQEALESQNIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 292 KSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|302391953|ref|YP_003827773.1| ATP-dependent DNA helicase, RecQ-like protein [Acetohalobium
arabaticum DSM 5501]
gi|302204030|gb|ADL12708.1| ATP-dependent DNA helicase, RecQ-like protein [Acetohalobium
arabaticum DSM 5501]
Length = 711
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 202/337 (59%), Gaps = 11/337 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GY SF+ GQ E I +L +T+ +LPTG GKS+C+QIPA+ L G+T+V PL
Sbjct: 7 QILQNYFGYKSFKPGQKEIIDNILAGNNTIGILPTGGGKSICFQIPAVCLSGVTVVFSPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L V I F++SS +E+ I +++ +L+++PER + F S+
Sbjct: 67 ISLMKDQIDSLRAVGIDATFINSSLSRKEIRNRIEGVKLDQYDLLYIAPERLESNKFFSL 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
ISL+VVDEAHC+S+W H+FRP+Y+ L ++LL + + A TATAT +D
Sbjct: 127 LKTID-ISLIVVDEAHCISQWGHDFRPAYL-LISNLLDKLDDNPIVTAFTATATEDVRKD 184
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ S L+I SN+ + R NL + + G ++++ YV +S I+ +
Sbjct: 185 IGSILDIKESNIFITSFDRPNLNFKL-IKGEDKRDFIEEYV------ATNSGEAGIIYAA 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ E D + +L + +V YH+G+ + R + Q+ F ++I VVVAT AFGMG+DK
Sbjct: 238 TRK-EVDNLYSFLQEEGFAVGKYHAGLSSVVRKKTQDDFLYDRIEVVVATNAFGMGIDKS 296
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+V VIH+++P+ +E Y QE GRAGRDG S C L
Sbjct: 297 NVRYVIHHNMPKDIESYYQEAGRAGRDGEQSECVLLF 333
>gi|15923711|ref|NP_371245.1| DNA helicase [Staphylococcus aureus subsp. aureus Mu50]
gi|15926398|ref|NP_373931.1| DNA helicase [Staphylococcus aureus subsp. aureus N315]
gi|21282412|ref|NP_645500.1| DNA helicase [Staphylococcus aureus subsp. aureus MW2]
gi|49482977|ref|YP_040201.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49485593|ref|YP_042814.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57651557|ref|YP_185655.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus COL]
gi|87160157|ref|YP_493408.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194495|ref|YP_499290.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267180|ref|YP_001246123.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus JH9]
gi|150393229|ref|YP_001315904.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus JH1]
gi|151220901|ref|YP_001331723.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979049|ref|YP_001441308.1| DNA helicase [Staphylococcus aureus subsp. aureus Mu3]
gi|161508985|ref|YP_001574644.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253731344|ref|ZP_04865509.1| DNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253732835|ref|ZP_04867000.1| DNA helicase [Staphylococcus aureus subsp. aureus TCH130]
gi|257424840|ref|ZP_05601267.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257427508|ref|ZP_05603907.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257430140|ref|ZP_05606524.1| DNA helicase [Staphylococcus aureus subsp. aureus 68-397]
gi|257432841|ref|ZP_05609201.1| DNA helicase [Staphylococcus aureus subsp. aureus E1410]
gi|257435745|ref|ZP_05611793.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus M876]
gi|257794959|ref|ZP_05643938.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A9781]
gi|258418275|ref|ZP_05682540.1| DNA helicase [Staphylococcus aureus A9763]
gi|258421572|ref|ZP_05684497.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A9719]
gi|258430766|ref|ZP_05688478.1| ATP-dependent helicase RecQ [Staphylococcus aureus A9299]
gi|258441742|ref|ZP_05691014.1| DNA helicase [Staphylococcus aureus A8115]
gi|258445817|ref|ZP_05693994.1| DNA helicase [Staphylococcus aureus A6300]
gi|258449628|ref|ZP_05697730.1| DNA helicase [Staphylococcus aureus A6224]
gi|258452929|ref|ZP_05700923.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A5948]
gi|258454028|ref|ZP_05702000.1| DNA helicase [Staphylococcus aureus A5937]
gi|262052784|ref|ZP_06024972.1| probable DNA helicase [Staphylococcus aureus 930918-3]
gi|269202340|ref|YP_003281609.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus ED98]
gi|282894486|ref|ZP_06302715.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A8117]
gi|282903349|ref|ZP_06311240.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus C160]
gi|282905128|ref|ZP_06312986.1| DNA helicase [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908105|ref|ZP_06315936.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282910365|ref|ZP_06318169.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282913559|ref|ZP_06321348.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus M899]
gi|282916059|ref|ZP_06323822.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus D139]
gi|282918512|ref|ZP_06326249.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus C427]
gi|282922014|ref|ZP_06329711.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A9765]
gi|282923477|ref|ZP_06331157.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus C101]
gi|282926584|ref|ZP_06334214.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A10102]
gi|283957551|ref|ZP_06375004.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293500605|ref|ZP_06666456.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509552|ref|ZP_06668263.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus M809]
gi|293524138|ref|ZP_06670825.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus M1015]
gi|294849390|ref|ZP_06790133.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A9754]
gi|295406439|ref|ZP_06816245.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A8819]
gi|295427297|ref|ZP_06819932.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297208555|ref|ZP_06924984.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|297245166|ref|ZP_06929040.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A8796]
gi|297590352|ref|ZP_06948991.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
MN8]
gi|300912647|ref|ZP_07130090.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
TCH70]
gi|304381664|ref|ZP_07364313.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|379014008|ref|YP_005290244.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VC40]
gi|384861389|ref|YP_005744109.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|384864046|ref|YP_005749405.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|384868352|ref|YP_005748548.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
TCH60]
gi|384869307|ref|YP_005752021.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus T0131]
gi|387142415|ref|YP_005730808.1| putative ATP-dependent DNA helicase [Staphylococcus aureus subsp.
aureus TW20]
gi|387149883|ref|YP_005741447.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus 04-02981]
gi|416848549|ref|ZP_11907819.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
gi|417649214|ref|ZP_12299019.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21189]
gi|417652531|ref|ZP_12302278.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21172]
gi|417655219|ref|ZP_12304933.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21193]
gi|417796209|ref|ZP_12443425.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21305]
gi|417887263|ref|ZP_12531396.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21195]
gi|417892377|ref|ZP_12536427.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21201]
gi|417896677|ref|ZP_12540621.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21235]
gi|417900202|ref|ZP_12544097.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21259]
gi|418313748|ref|ZP_12925233.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21334]
gi|418315239|ref|ZP_12926703.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21340]
gi|418319601|ref|ZP_12930978.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21232]
gi|418322087|ref|ZP_12933424.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VCU006]
gi|418423859|ref|ZP_12997002.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VRS1]
gi|418429768|ref|ZP_13002695.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418432665|ref|ZP_13005460.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VRS4]
gi|418436380|ref|ZP_13008191.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS5]
gi|418439278|ref|ZP_13010994.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS6]
gi|418442257|ref|ZP_13013869.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VRS7]
gi|418445384|ref|ZP_13016871.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS8]
gi|418448323|ref|ZP_13019724.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451145|ref|ZP_13022484.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454167|ref|ZP_13025435.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457071|ref|ZP_13028281.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418565483|ref|ZP_13129887.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21264]
gi|418568722|ref|ZP_13133066.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21272]
gi|418571085|ref|ZP_13135333.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21283]
gi|418595863|ref|ZP_13159458.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21342]
gi|418600677|ref|ZP_13164133.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21343]
gi|418601745|ref|ZP_13165161.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21345]
gi|418639434|ref|ZP_13201681.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-3]
gi|418640886|ref|ZP_13203102.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-24]
gi|418648973|ref|ZP_13211006.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-88]
gi|418651059|ref|ZP_13213070.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-91]
gi|418660881|ref|ZP_13222489.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-122]
gi|418946599|ref|ZP_13499017.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-157]
gi|418954829|ref|ZP_13506781.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-189]
gi|419775458|ref|ZP_14301397.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CO-23]
gi|419784560|ref|ZP_14310324.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-M]
gi|421149489|ref|ZP_15609147.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|422744863|ref|ZP_16798818.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422746680|ref|ZP_16800611.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424767483|ref|ZP_18194804.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CM05]
gi|424784578|ref|ZP_18211388.1| ATP-dependent DNA helicase [Staphylococcus aureus CN79]
gi|440708278|ref|ZP_20888947.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21282]
gi|440734201|ref|ZP_20913814.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|443636989|ref|ZP_21121081.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21236]
gi|448741959|ref|ZP_21723915.1| DNA helicase [Staphylococcus aureus KT/314250]
gi|448743538|ref|ZP_21725446.1| DNA helicase [Staphylococcus aureus KT/Y21]
gi|13700612|dbj|BAB41909.1| probable DNA helicase [Staphylococcus aureus subsp. aureus N315]
gi|14246490|dbj|BAB56883.1| probable DNA helicase [Staphylococcus aureus subsp. aureus Mu50]
gi|21203849|dbj|BAB94548.1| probable DNA helicase [Staphylococcus aureus subsp. aureus MW2]
gi|49241106|emb|CAG39784.1| putative ATP-dependent DNA helicase [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49244036|emb|CAG42462.1| putative ATP-dependent DNA helicase [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57285743|gb|AAW37837.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus COL]
gi|87126131|gb|ABD20645.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202053|gb|ABD29863.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|147740249|gb|ABQ48547.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus JH9]
gi|149945681|gb|ABR51617.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus JH1]
gi|150373701|dbj|BAF66961.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721184|dbj|BAF77601.1| probable DNA helicase [Staphylococcus aureus subsp. aureus Mu3]
gi|160367794|gb|ABX28765.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253725085|gb|EES93814.1| DNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253729200|gb|EES97929.1| DNA helicase [Staphylococcus aureus subsp. aureus TCH130]
gi|257272410|gb|EEV04533.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257275701|gb|EEV07174.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257279337|gb|EEV09938.1| DNA helicase [Staphylococcus aureus subsp. aureus 68-397]
gi|257282256|gb|EEV12391.1| DNA helicase [Staphylococcus aureus subsp. aureus E1410]
gi|257284936|gb|EEV15055.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus M876]
gi|257788931|gb|EEV27271.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A9781]
gi|257839068|gb|EEV63547.1| DNA helicase [Staphylococcus aureus A9763]
gi|257842498|gb|EEV66922.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A9719]
gi|257849438|gb|EEV73408.1| ATP-dependent helicase RecQ [Staphylococcus aureus A9299]
gi|257852211|gb|EEV76138.1| DNA helicase [Staphylococcus aureus A8115]
gi|257855393|gb|EEV78331.1| DNA helicase [Staphylococcus aureus A6300]
gi|257857136|gb|EEV80035.1| DNA helicase [Staphylococcus aureus A6224]
gi|257859440|gb|EEV82294.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A5948]
gi|257863893|gb|EEV86649.1| DNA helicase [Staphylococcus aureus A5937]
gi|259159325|gb|EEW44381.1| probable DNA helicase [Staphylococcus aureus 930918-3]
gi|262074630|gb|ACY10603.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus ED98]
gi|269940298|emb|CBI48675.1| putative ATP-dependent DNA helicase [Staphylococcus aureus subsp.
aureus TW20]
gi|282314345|gb|EFB44735.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus C101]
gi|282317646|gb|EFB48018.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus C427]
gi|282320007|gb|EFB50354.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus D139]
gi|282322591|gb|EFB52913.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus M899]
gi|282325757|gb|EFB56065.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282327770|gb|EFB58052.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282331953|gb|EFB61464.1| DNA helicase [Staphylococcus aureus subsp. aureus Btn1260]
gi|282591477|gb|EFB96549.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A10102]
gi|282593672|gb|EFB98664.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A9765]
gi|282596304|gb|EFC01265.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus C160]
gi|282763199|gb|EFC03330.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A8117]
gi|283791002|gb|EFC29817.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus A017934/97]
gi|285816422|gb|ADC36909.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus 04-02981]
gi|290921101|gb|EFD98162.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus M1015]
gi|291095610|gb|EFE25871.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467649|gb|EFF10164.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus M809]
gi|294823922|gb|EFG40348.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A9754]
gi|294968584|gb|EFG44607.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A8819]
gi|295128685|gb|EFG58316.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296886810|gb|EFH25714.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|297177837|gb|EFH37086.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus A8796]
gi|297576651|gb|EFH95366.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
MN8]
gi|300886893|gb|EFK82095.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
TCH70]
gi|302750618|gb|ADL64795.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|304339767|gb|EFM05712.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|312438857|gb|ADQ77928.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
TCH60]
gi|312829213|emb|CBX34055.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|320139948|gb|EFW31809.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320141963|gb|EFW33791.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus MRSA177]
gi|323441580|gb|EGA99229.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
gi|329313442|gb|AEB87855.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus T0131]
gi|329724641|gb|EGG61148.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21172]
gi|329728560|gb|EGG64993.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21189]
gi|329729680|gb|EGG66081.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21193]
gi|334270073|gb|EGL88481.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21305]
gi|341840409|gb|EGS81914.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21235]
gi|341842974|gb|EGS84207.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21259]
gi|341857839|gb|EGS98649.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21201]
gi|341858316|gb|EGS99113.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21195]
gi|365223696|gb|EHM64971.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VCU006]
gi|365235447|gb|EHM76366.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21334]
gi|365240415|gb|EHM81195.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21232]
gi|365243869|gb|EHM84537.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21340]
gi|371973412|gb|EHO90762.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21264]
gi|371979089|gb|EHO96326.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21272]
gi|371981568|gb|EHO98740.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21283]
gi|374362705|gb|AEZ36810.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VC40]
gi|374393484|gb|EHQ64797.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21343]
gi|374397556|gb|EHQ68765.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21345]
gi|374400471|gb|EHQ71585.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21342]
gi|375017460|gb|EHS11074.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-3]
gi|375020083|gb|EHS13624.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-24]
gi|375024679|gb|EHS18101.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-88]
gi|375026871|gb|EHS20249.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-91]
gi|375039873|gb|EHS32787.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-122]
gi|375372210|gb|EHS75963.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-189]
gi|375377751|gb|EHS81197.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-157]
gi|383364004|gb|EID41329.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus IS-M]
gi|383970681|gb|EID86774.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CO-23]
gi|387720595|gb|EIK08504.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387722383|gb|EIK10200.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VRS1]
gi|387727025|gb|EIK14560.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VRS4]
gi|387729205|gb|EIK16665.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS5]
gi|387731359|gb|EIK18667.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS6]
gi|387737733|gb|EIK24794.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS8]
gi|387739185|gb|EIK26197.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS9]
gi|387739234|gb|EIK26242.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus VRS7]
gi|387746309|gb|EIK33041.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS10]
gi|387747141|gb|EIK33851.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387748671|gb|EIK35340.1| recQ1- ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus VRS11b]
gi|394330406|gb|EJE56498.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|402348986|gb|EJU83956.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus CM05]
gi|408423112|emb|CCJ10523.1| Probable DNA helicase [Staphylococcus aureus subsp. aureus ST228]
gi|408425102|emb|CCJ12489.1| Probable DNA helicase [Staphylococcus aureus subsp. aureus ST228]
gi|408427090|emb|CCJ14453.1| Probable DNA helicase [Staphylococcus aureus subsp. aureus ST228]
gi|408429077|emb|CCJ26242.1| Probable DNA helicase [Staphylococcus aureus subsp. aureus ST228]
gi|408431065|emb|CCJ18380.1| Probable DNA helicase [Staphylococcus aureus subsp. aureus ST228]
gi|408433059|emb|CCJ20344.1| Probable DNA helicase [Staphylococcus aureus subsp. aureus ST228]
gi|408435050|emb|CCJ22310.1| Probable DNA helicase [Staphylococcus aureus subsp. aureus ST228]
gi|408437035|emb|CCJ24278.1| Probable DNA helicase [Staphylococcus aureus subsp. aureus ST228]
gi|421957177|gb|EKU09501.1| ATP-dependent DNA helicase [Staphylococcus aureus CN79]
gi|436432096|gb|ELP29448.1| ATP-dependent helicase RecQ [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436505090|gb|ELP41039.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21282]
gi|443406655|gb|ELS65228.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21236]
gi|445547351|gb|ELY15621.1| DNA helicase [Staphylococcus aureus KT/314250]
gi|445563237|gb|ELY19400.1| DNA helicase [Staphylococcus aureus KT/Y21]
Length = 593
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 10 FGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKD 69
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I FL+SS +E + + G I+ L+V+PERF N FL++
Sbjct: 70 QVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIK- 128
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT +D+ L
Sbjct: 129 IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQQDIREKLN 187
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ I+ + R NL V N +R ++ + H I+ S + +
Sbjct: 188 IAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIYCSTRK-QV 239
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F ++++VVVAT AFGMG+DK +V VI
Sbjct: 240 EELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVI 299
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 300 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|449107912|ref|ZP_21744557.1| ATP-dependent DNA helicase RecQ [Treponema denticola ATCC 33520]
gi|449118594|ref|ZP_21754999.1| ATP-dependent DNA helicase RecQ [Treponema denticola H1-T]
gi|449120988|ref|ZP_21757341.1| ATP-dependent DNA helicase RecQ [Treponema denticola MYR-T]
gi|448951641|gb|EMB32452.1| ATP-dependent DNA helicase RecQ [Treponema denticola MYR-T]
gi|448952536|gb|EMB33339.1| ATP-dependent DNA helicase RecQ [Treponema denticola H1-T]
gi|448962281|gb|EMB42972.1| ATP-dependent DNA helicase RecQ [Treponema denticola ATCC 33520]
Length = 626
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 199/355 (56%), Gaps = 12/355 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR Q E I +L KK + V+PTG GKSLCYQ+PA+I G+T+VV PL+
Sbjct: 20 ILKQVFGYDEFRPFQKEIIDNLLQKKDVLAVMPTGGGKSLCYQVPALIFEGVTIVVSPLI 79
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + L+SS E+ A+ IR I+ G +K+L+V+PE L +D
Sbjct: 80 SLMHDQICGLETIGVEAVALNSSLDWEKYADNIRRIKNGEVKILYVAPET-LASDRCKEL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ + + +DEAHC+SEW H+FRP Y +L + +R L LA+TATAT D+
Sbjct: 139 LSSIKVDCLTIDEAHCISEWGHDFRPEYRQL--AEIRKLLKESACLAITATATEKVRSDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L++ R N+ L V E+ ++ F + K +
Sbjct: 197 KKILKLKTPKEFVAGFNRKNIFLEV--------KEKQKPFEQASDFLKEHKGESGIIYCF 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D ++ L + K YH+G+ + R + Q F ++ I ++VATVAFGMG++K +
Sbjct: 249 SRKQADTLAVQLSVLGYNAKPYHAGLSDELRQKTQNDFINDDIEIIVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
V VIH+ LP+S+E+Y QEIGRAGRDG ++ L F+L+ LM DE
Sbjct: 309 VRFVIHFDLPKSIEQYYQEIGRAGRDGNPAHALLLFSAADIFKLKFLMQDKSPDE 363
>gi|418574219|ref|ZP_13138396.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21333]
gi|371980316|gb|EHO97530.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21333]
Length = 593
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 10 FGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKD 69
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I FL+SS +E + + G I+ L+V+PERF N FL++
Sbjct: 70 QVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIK- 128
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT +D+ L
Sbjct: 129 IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQQDIREKLN 187
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ I+ + R NL V N +R ++ + H I+ S + +
Sbjct: 188 IAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIYCSTRK-QV 239
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F ++++VVVAT AFGMG+DK +V VI
Sbjct: 240 EELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVI 299
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 300 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|449106291|ref|ZP_21742959.1| ATP-dependent DNA helicase RecQ [Treponema denticola ASLM]
gi|451968003|ref|ZP_21921232.1| ATP-dependent DNA helicase RecQ [Treponema denticola US-Trep]
gi|448965486|gb|EMB46149.1| ATP-dependent DNA helicase RecQ [Treponema denticola ASLM]
gi|451703381|gb|EMD57756.1| ATP-dependent DNA helicase RecQ [Treponema denticola US-Trep]
Length = 626
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 199/355 (56%), Gaps = 12/355 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR Q E I +L KK + V+PTG GKSLCYQ+PA+I G+T+VV PL+
Sbjct: 20 ILKQVFGYDEFRPFQKEIIDSLLQKKDVLAVMPTGGGKSLCYQVPALIFEGVTIVVSPLI 79
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + L+SS E+ A+ IR I+ G +K+L+V+PE L +D
Sbjct: 80 SLMHDQICGLETIGVEAVTLNSSLDWEKYADNIRRIKNGEVKILYVAPET-LASDRCKEL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ + + +DEAHC+SEW H+FRP Y +L + +R L LA+TATAT D+
Sbjct: 139 LSSIKVDCLTIDEAHCISEWGHDFRPEYRQL--AEIRKLLKESACLAITATATEKVRSDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L++ R N+ L V E+ ++ F + K +
Sbjct: 197 KKILKLKTPKEFVAGFNRKNIFLEV--------KEKQKPFEQASDFLKEHKGESGIIYCF 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D ++ L + K YH+G+ + R + Q F ++ I ++VATVAFGMG++K +
Sbjct: 249 SRKQADTLAVQLSVLGYNAKPYHAGLSDELRQKTQNDFINDDIEIIVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
V VIH+ LP+S+E+Y QEIGRAGRDG ++ L F+L+ LM DE
Sbjct: 309 VRFVIHFDLPKSIEQYYQEIGRAGRDGNPAHALLLFSAADIFKLKFLMQDKSPDE 363
>gi|449117321|ref|ZP_21753763.1| ATP-dependent DNA helicase RecQ [Treponema denticola H-22]
gi|448951714|gb|EMB32524.1| ATP-dependent DNA helicase RecQ [Treponema denticola H-22]
Length = 626
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 199/355 (56%), Gaps = 12/355 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR Q E I +L KK + V+PTG GKSLCYQ+PA+I G+T+VV PL+
Sbjct: 20 ILKQVFGYDEFRPFQKEIIDSLLQKKDVLAVMPTGGGKSLCYQVPALIFEGVTIVVSPLI 79
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + L+SS E+ A+ IR I+ G +K+L+V+PE L +D
Sbjct: 80 SLMHDQICGLETIGVEAVALNSSLDWEKYADNIRRIKNGEVKILYVAPET-LASDRCKEL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ + + +DEAHC+SEW H+FRP Y +L + +R L LA+TATAT D+
Sbjct: 139 LSSIKVDCLTIDEAHCISEWGHDFRPEYRQL--AEIRKLLKESACLAITATATEKVRSDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L++ R N+ L V E+ ++ F + K +
Sbjct: 197 KKILKLKTPKEFVAGFNRKNIFLEV--------KEKQKPFEQASDFLKEHKGESGIIYCF 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D ++ L + K YH+G+ + R + Q F ++ I ++VATVAFGMG++K +
Sbjct: 249 SRKQADTLAVQLSVLGYNAKPYHAGLSDELRQKTQNDFINDDIEIIVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
V VIH+ LP+S+E+Y QEIGRAGRDG ++ L F+L+ LM DE
Sbjct: 309 VRFVIHFDLPKSIEQYYQEIGRAGRDGNPAHALLLFSAADIFKLKFLMQDKSPDE 363
>gi|333446335|ref|ZP_08481277.1| ATP-dependent DNA helicase RecQ [Leuconostoc inhae KCTC 3774]
Length = 599
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 196/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD+FR GQL+ I+ VL K + ++PTG GKS+ YQ+PAM+ G+TLV+ PL+
Sbjct: 6 ILKEKFGYDNFRTGQLDVIEKVLAHKHALAIMPTGGGKSITYQLPAMLFDGITLVISPLI 65
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I FL+S+ + A+ + ++ G K+L+VSPER + F F
Sbjct: 66 SLMKDQVDGLDAMGIDATFLNSTLSGQVQAQRMSDLRSGYYKMLYVSPERLEISSFFD-F 124
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I LV +DEAH +S+W H+FRPSY+ + L + N +L +TATAT +++
Sbjct: 125 IQQLPIELVAIDEAHVMSQWGHDFRPSYLNILPLLAKIPGN-PAVLGLTATATDRVRQNL 183
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L + + I RDNL L ++ + + RQ YV E + R +K + +
Sbjct: 184 QQLLGVSDEDTILTGFARDNLALKIAHNVDKRQ-----YVQE---YLRENKDQSGIIYAA 235
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + +L + YH+G+P ++R +QE F ++++V+VAT AFGMG++K +
Sbjct: 236 TRKQVDELYEFLNKKGVKAGHYHAGLPERERQTMQEAFLFDEVQVMVATNAFGMGINKPN 295
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHYS+P ++E Y QEIGRAGRDG
Sbjct: 296 VRFVIHYSVPGNIEAYYQEIGRAGRDG 322
>gi|449130154|ref|ZP_21766378.1| ATP-dependent DNA helicase RecQ [Treponema denticola SP37]
gi|448943756|gb|EMB24642.1| ATP-dependent DNA helicase RecQ [Treponema denticola SP37]
Length = 626
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 199/355 (56%), Gaps = 12/355 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR Q E I +L KK + V+PTG GKSLCYQ+PA+I G+T+VV PL+
Sbjct: 20 ILKQVFGYDEFRPFQKEIIDSLLQKKDVLAVMPTGGGKSLCYQVPALIFEGVTIVVSPLI 79
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + L+SS E+ A+ IR I+ G +K+L+V+PE L +D
Sbjct: 80 SLMHDQICGLETIGVEAVALNSSLDWEKYADNIRRIKNGEVKILYVAPET-LASDRCKEL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ + + +DEAHC+SEW H+FRP Y +L + +R L LA+TATAT D+
Sbjct: 139 LSSIKVDCLTIDEAHCISEWGHDFRPEYRQL--AEIRKLLKESACLAITATATEKVRSDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L++ R N+ L V E+ ++ F + K +
Sbjct: 197 KKILKLKTPKEFVAGFNRKNIFLEV--------KEKQKPFEQASDFLKEHKGESGIIYCF 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D ++ L + K YH+G+ + R + Q F ++ I ++VATVAFGMG++K +
Sbjct: 249 SRKQADTLAVQLSVLGYNAKPYHAGLSDELRQKTQNDFINDDIEIIVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
V VIH+ LP+S+E+Y QEIGRAGRDG ++ L F+L+ LM DE
Sbjct: 309 VRFVIHFDLPKSIEQYYQEIGRAGRDGNPAHALLLFSAADIFKLKFLMQDKSPDE 363
>gi|358057470|dbj|GAA96819.1| hypothetical protein E5Q_03491 [Mixia osmundae IAM 14324]
Length = 821
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 182/633 (28%), Positives = 287/633 (45%), Gaps = 55/633 (8%)
Query: 192 LLRLVYGYDSFRDGQLEAIK-MVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+L+ + Y FR Q E I+ +++ KS L+LPTG GKSLC+Q+PA+ L GLTLV+ PL
Sbjct: 7 ILQDKFDYSDFRPLQAEVIRRLLVHDKSAALILPTGGGKSLCFQVPALCLKGLTLVISPL 66
Query: 251 VALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I L SS + + ++ G +K+L+V+PER F+++
Sbjct: 67 ISLMKDQVDALKRKHIEAASLDSSLSGTDYFAVMDKLREGKLKILYVAPERLEMESFVNM 126
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
T I L+ VDEAH VS W H FRP+Y++L L + +L +TATAT +D
Sbjct: 127 IKQTR-IDLMAVDEAHSVSAWGHTFRPTYLKLVK--FAQDLKIPRLLLLTATATPQVAKD 183
Query: 370 VMSALEI-PLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+ + + L R NL +SV+ + E+S + D++ +F R+++ I+ +
Sbjct: 184 MCEQFGVDAVKGLFVAPIYRPNLHISVA----SVMGEKSKF-DKLVAFLRATRGSKIIYV 238
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + DL + + YH+G+ A RS Q+ + +K ++VAT+AFGMGLD
Sbjct: 239 TTQKQTEDLRHKLSASGFSKIDCYHAGLSADARSSAQDRYMKSKDHIIVATIAFGMGLDH 298
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAI 548
+ ++HY P+SL Y Q IGR GRDG+ C+L LD L++L+ D +
Sbjct: 299 PETRGIVHYCPPQSLSGYSQGIGRGGRDGKRCDCYLILDQSDLPTLKALIRGDTPSNRTV 358
Query: 549 NKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKV 608
+L + + ++ + + S SRK+DI+E + + C++L E+ + L
Sbjct: 359 IGWLKEFLSTPTDTDNTISQNLM-SMSRKWDIRETSL--AICCVKL-ELVHCILRATSPF 414
Query: 609 TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNL 668
T + P A VA +K TK+ D +A S ++ +
Sbjct: 415 NVTYTYDVLRPDEWAKDTSEVAMAIKSCNTKK----VDTVNLATSASIPRAQIAQKFSEH 470
Query: 669 KMRGEITYELKDPAYCYTIV-EVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAV 727
+ G L D + Y + +P D L L + E + +L
Sbjct: 471 ERLGNFKISLGDRRHRYVVTGRIPKDLDTLGTQLGSEIHAREEEAIGRLS---------- 520
Query: 728 DVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPN-KIGQSSPFLRADIKVFLQSNLNA 786
DV E G C + + YF D VPN + G S L
Sbjct: 521 DVLEYAKG------DTCYAQQLATYFGDKDG--VPNGQCGNCSRCLSGKPLELSPPEPPQ 572
Query: 787 KFT----------------PRAVARILHGIASP 803
FT PR +AR GI SP
Sbjct: 573 AFTRAIFDKILATCGVRDDPRCLARFAAGIRSP 605
>gi|449125135|ref|ZP_21761451.1| ATP-dependent DNA helicase RecQ [Treponema denticola OTK]
gi|448940319|gb|EMB21228.1| ATP-dependent DNA helicase RecQ [Treponema denticola OTK]
Length = 626
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 199/355 (56%), Gaps = 12/355 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR Q E I +L KK + V+PTG GKSLCYQ+PA+I G+T+VV PL+
Sbjct: 20 ILKQVFGYDEFRPFQKEIIDSLLQKKDVLAVMPTGGGKSLCYQVPALIFEGVTIVVSPLI 79
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + L+SS E+ A+ IR I+ G +K+L+V+PE L +D
Sbjct: 80 SLMHDQICGLETIGVEAVALNSSLDWEKYADNIRRIKNGEVKILYVAPET-LASDRCKEL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ + + +DEAHC+SEW H+FRP Y +L + +R L LA+TATAT D+
Sbjct: 139 LSSIKVDCLTIDEAHCISEWGHDFRPEYRQL--AEIRKLLKESACLAITATATEKVRSDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L++ R N+ L V E+ ++ F + K +
Sbjct: 197 KKILKLKTPKEFVAGFNRKNIFLEV--------KEKQKPFEQASDFLKEHKGESGIIYCF 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D ++ L + K YH+G+ + R + Q F ++ I ++VATVAFGMG++K +
Sbjct: 249 SRKQADTLAVQLSVLGYNAKPYHAGLSDELRQKTQNDFINDDIEIIVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
V VIH+ LP+S+E+Y QEIGRAGRDG ++ L F+L+ LM DE
Sbjct: 309 VRFVIHFDLPKSIEQYYQEIGRAGRDGNPAHALLLFSAADIFKLKFLMQDKSPDE 363
>gi|416842108|ref|ZP_11904843.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
gi|323438931|gb|EGA96666.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
Length = 593
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 10 FGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKD 69
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I FL+SS +E + + G I+ L+V+PERF N FL++
Sbjct: 70 QVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIK- 128
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT +D+ L
Sbjct: 129 IYLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQQDIREKLN 187
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ I+ + R NL V N +R ++ + H I+ S + +
Sbjct: 188 IAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIYCSTRK-QV 239
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F ++++VVVAT AFGMG+DK +V VI
Sbjct: 240 EELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVI 299
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 300 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|42525842|ref|NP_970940.1| ATP-dependent DNA helicase RecQ [Treponema denticola ATCC 35405]
gi|449110443|ref|ZP_21747044.1| ATP-dependent DNA helicase RecQ [Treponema denticola ATCC 33521]
gi|449114749|ref|ZP_21751224.1| ATP-dependent DNA helicase RecQ [Treponema denticola ATCC 35404]
gi|41815892|gb|AAS10821.1| ATP-dependent DNA helicase RecQ [Treponema denticola ATCC 35405]
gi|448955570|gb|EMB36336.1| ATP-dependent DNA helicase RecQ [Treponema denticola ATCC 35404]
gi|448960366|gb|EMB41079.1| ATP-dependent DNA helicase RecQ [Treponema denticola ATCC 33521]
Length = 626
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 199/355 (56%), Gaps = 12/355 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR Q E I +L KK + V+PTG GKSLCYQ+PA+I G+T+VV PL+
Sbjct: 20 ILKQVFGYDEFRPFQKEIIDSLLQKKDVLAVMPTGGGKSLCYQVPALIFEGVTIVVSPLI 79
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + L+SS E+ A+ IR I+ G +K+L+V+PE L +D
Sbjct: 80 SLMHDQICGLETIGVEAVALNSSLDWEKYADNIRRIKNGEVKILYVAPET-LASDRCKEL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ + + +DEAHC+SEW H+FRP Y +L + +R L LA+TATAT D+
Sbjct: 139 LSSIKVDCLTIDEAHCISEWGHDFRPEYRQL--AEIRKLLKESACLAITATATEKVRSDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L++ R N+ L V E+ ++ F + K +
Sbjct: 197 KKILKLKTPKEFVAGFNRKNIFLEV--------KEKQKPFEQASDFLKEHKGESGIIYCF 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D ++ L + K YH+G+ + R + Q F ++ I ++VATVAFGMG++K +
Sbjct: 249 SRKQADTLAVQLSVLGYNAKPYHAGLSDELRQKTQNDFINDDIEIIVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
V VIH+ LP+S+E+Y QEIGRAGRDG ++ L F+L+ LM DE
Sbjct: 309 VRFVIHFDLPKSIEQYYQEIGRAGRDGNPAHALLLFSAADIFKLKFLMQDKSPDE 363
>gi|24375725|ref|NP_719768.1| ATP-dependent DNA helicase RecQ [Shewanella oneidensis MR-1]
gi|24350662|gb|AAN57212.1|AE015857_5 ATP-dependent DNA helicase RecQ [Shewanella oneidensis MR-1]
Length = 607
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 13/354 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D+ L L V+GY FRDGQ E I+ V + ++++PTG GKSLCYQ+PA+++ G+T+
Sbjct: 10 DDPLSERLAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGITI 69
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
VV PL++LM DQ+ L ++ +L+SSQ E E +R + +G +K+L+VSPER L A
Sbjct: 70 VVSPLISLMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLYVSPERLLTA 129
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
DF+ + L S+ +DEAHC+S+W H+FRP Y L L+ ++A+TATA
Sbjct: 130 DFIERMQSLPL-SMFAIDEAHCISQWGHDFRPEYAAL--GQLKQLFPHVPMMALTATADQ 186
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
T +++ L I L+ R N++ +V+ N R F ++
Sbjct: 187 ATRQNICERLGINPFKLLSSFD-RPNIRYTVAEKLNAANQLRQ------FLLQQNGSSGI 239
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
I S + D ++ L K+YH+G+ ++R +Q+ F ++I +VVATVAFGM
Sbjct: 240 IYCSSRRR--VDEVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGM 297
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
G++K +V V+HY +P+S+E Y QE GRAGRDG + + D R+R L+
Sbjct: 298 GINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLI 351
>gi|297581635|ref|ZP_06943557.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC385]
gi|297534042|gb|EFH72881.1| ATP-dependent DNA helicase RecQ [Vibrio cholerae RC385]
Length = 620
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 201/346 (58%), Gaps = 14/346 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L V+GY FR GQ E I+ L +++++PTG GKSLCYQIPA++L G+TLV+ PL
Sbjct: 27 RVLHEVFGYQQFRVGQQEVIEAALAGCDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPL 86
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + ++S+ EE+ + G +K+L+VSPER L A+F+
Sbjct: 87 ISLMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIER 146
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L +++ VDEAHC+S+W H+FRP Y L L+ R ++A+TATA T D
Sbjct: 147 LSHLPL-AMIAVDEAHCISQWGHDFRPEYASL--GQLKQRFPNVPVMALTATADDATRHD 203
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+M L++ + + R N++ + E+ V +V + + + +
Sbjct: 204 IMQRLQLNEPHQYLGSFDRPNIRYMLV--------EKHKPVSQVIRYLETQRGQCGIIYC 255
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
G + ++++ LC N I SYH+G+ A +R+ +QE F + +++VVATVAFGMG++K
Sbjct: 256 GSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKP 315
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y E GRAGRDG + + D D+ + R
Sbjct: 316 NVRFVVHFDIPRNIESYYHETGRAGRDGLPAEAMMLYDPADMNWLR 361
>gi|395801803|ref|ZP_10481058.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
gi|395435992|gb|EJG01931.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
Length = 731
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 206/368 (55%), Gaps = 18/368 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+ F+ Q + I +LD K+T +++PTG GKSLCYQ+PA+I G +VV PL+A
Sbjct: 12 LKKYFGFSQFKGLQEQVITSILDGKNTFVIMPTGGGKSLCYQLPALIQEGTAIVVSPLIA 71
Query: 253 LM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
LM +D +R L + H L+SS E+A+ + I G K+L+V+PE ++
Sbjct: 72 LMKNQVDAIRSLSSENGIAH--VLNSSLTKTEIAQVKKDITSGLTKLLYVAPESLTKEEY 129
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
++ F + IS V +DEAHC+SEW H+FRP Y LR + +L I+ +TATAT
Sbjct: 130 VA-FLQSVPISFVAIDEAHCISEWGHDFRPEYRNLRNII--KQLGKVPIIGLTATATPKV 186
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D++ L++ +N + + R NL V N +++ ++ + H+ K I
Sbjct: 187 QEDILKNLDMADANTFKASFNRPNLYYEVRTKTKNIESDIIRFIKQ----HKG-KSGIIY 241
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+S K E+ I+ L N IS YH+G+ AK R++ Q++F + VVVAT+AFGMG+
Sbjct: 242 CLSRKKVES--IAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGI 299
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK DV VIH+ +P+SLE Y QE GRAGRDG +C + +L M V E
Sbjct: 300 DKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQ 359
Query: 547 AINKFLCQ 554
I L Q
Sbjct: 360 EIGFALLQ 367
>gi|118579582|ref|YP_900832.1| ATP-dependent DNA helicase RecQ [Pelobacter propionicus DSM 2379]
gi|118502292|gb|ABK98774.1| ATP-dependent DNA helicase RecQ [Pelobacter propionicus DSM 2379]
Length = 714
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 191/334 (57%), Gaps = 16/334 (4%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
++L L+ V+GY SFR Q E I+ V+ + LV+PTG GKSLCYQIPA+ G+ +V
Sbjct: 3 DSLDHTLKSVFGYGSFRPPQREVIQRVVAGEDVFLVMPTGGGKSLCYQIPALHREGVAIV 62
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL++LM DQ+ L + +SS EE R + G + +L+V+PER L D
Sbjct: 63 VSPLISLMKDQVDGLVDAGVRAACYNSSLTAEESRAVSRQLAQGELDLLYVAPERLLLPD 122
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
FL L +L +DEAHC+S+W H+FRP Y++L LR I+AMTATA
Sbjct: 123 FLERLGGLKL-ALFAIDEAHCISQWGHDFRPDYVKL--GRLRELFPSVPIVAMTATADPE 179
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF--HRSSKHY 423
T RD++ L I + L R N+ +V + V+++ SF R +
Sbjct: 180 TRRDIIRQLGIERATLFVAGFDRPNITYAVI--------PKQKPVNQLLSFLKGRGDESG 231
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
+ +S K E ++ L +YH+G+P ++RSR+Q+ F + +RVVVATVAFG
Sbjct: 232 IVYALSRKRVEQ--VTERLQQAGFDAAAYHAGLPDRERSRVQDAFRRDDLRVVVATVAFG 289
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
MG+DK +V V+HY LP+S+E Y QE GRAGRDG
Sbjct: 290 MGIDKPNVRFVVHYDLPKSVESYYQETGRAGRDG 323
>gi|261854926|ref|YP_003262209.1| ATP-dependent DNA helicase RecQ [Halothiobacillus neapolitanus c2]
gi|261835395|gb|ACX95162.1| ATP-dependent DNA helicase RecQ [Halothiobacillus neapolitanus c2]
Length = 609
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 136/360 (37%), Positives = 208/360 (57%), Gaps = 19/360 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY +FR Q E I V+ + ++++PTG GKSLCYQ+PA+ L G +VV PL+
Sbjct: 12 ILNTVFGYPAFRGPQAEVIDTVMSGRDALVLMPTGGGKSLCYQVPALALSGTAIVVSPLI 71
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L + FL+S+Q EE + ++ G + +L+V+PER LNAD LS+
Sbjct: 72 ALMQDQVAALRQAGVAAAFLNSTQTGEEAQLVRKQLRAGTLDLLYVAPERLLNADTLSLL 131
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
S I+L+ +DEAHCVS+W H+FRP Y+RL L + ++ I A+TATA TT +++
Sbjct: 132 RDAS-INLIAIDEAHCVSQWGHDFRPEYIRL-GELGQYFPDIPRI-ALTATADGTTQQEI 188
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR---SSKHYYILQ 427
+ L + + + + R N++ ++ QN + D + F R +++ +
Sbjct: 189 LYRLGLNNARVFISSFDRPNIRYHIA------QNHAGSARDALLRFIRDNHANEAGIVYC 242
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+S K E I+ +L D ++ +YH+G+PA R + F +VVAT+AFGMG+D
Sbjct: 243 LSRKRVEE--IAAWLSDQGLTALAYHAGLPATQREQTLRRFLDEDGVIVVATIAFGMGID 300
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDG--RLSYCHLFLDDITYFRLRSLMYSDGVDE 545
K DV V H +LP+S+E Y QE GRAGRDG ++ L D+ LR +M DE
Sbjct: 301 KPDVRFVAHLNLPKSIEAYYQETGRAGRDGLPAEAWMRYGLQDV--ITLRQMMSESNADE 358
>gi|455737381|ref|YP_007503647.1| ATP-dependent DNA helicase RecQ [Morganella morganii subsp.
morganii KT]
gi|455418944|gb|AGG29274.1| ATP-dependent DNA helicase RecQ [Morganella morganii subsp.
morganii KT]
Length = 608
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/354 (39%), Positives = 205/354 (57%), Gaps = 32/354 (9%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR V+GY FR GQ + I V + ++V+PTG GKSLCYQIPA++LPGLT+VV PL+
Sbjct: 16 ILRQVFGYQQFRAGQSDIIDTVTGGRDCLVVMPTGGGKSLCYQIPALMLPGLTVVVSPLI 75
Query: 252 ALM---IDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
+LM +DQLR L + G+L+S+Q +E + + IK+L+V+PER L + F+
Sbjct: 76 SLMKDQVDQLRLLG--VEAGYLNSAQTAQEQQKVLEGCHNNRIKLLYVAPERLLMSSFIR 133
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
SL+ VDEAHC+S+W H+FRP Y + LR L ++A+TATA TT
Sbjct: 134 QLQQWQ-PSLLAVDEAHCISQWGHDFRPEYCAI--GELRQHLPGVPVIALTATADNTTRS 190
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV------DEVFSFHRSSK- 421
D+ S L +L D L + +S +R N R V D+++ F R K
Sbjct: 191 DICSRL-----------RLSDPL---IHISSFDRPNIRYTLVEKYKAFDQLWMFVRGQKG 236
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I+ + ++ D+ +R L +SV +YH+G+ R +Q+ F + ++VVVATVA
Sbjct: 237 QCGIIYCNSRNKVEDVAAR-LQKRGLSVAAYHAGLDNSQREWVQDAFLKDNLQVVVATVA 295
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
FGMG++K +V V H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 296 FGMGINKSNVRFVAHFDIPRNIESYYQETGRAGRDGVSAEAVLFYDPADMAWLR 349
>gi|358410697|gb|AEU10083.1| ATP-dependent DNA helicase RecQ [Photobacterium damselae subsp.
piscicida]
Length = 613
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/347 (38%), Positives = 202/347 (58%), Gaps = 18/347 (5%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL V+GY FRDGQ + I L+ +++++PTG GKSLCYQIPA++L GLTLV+ PL+
Sbjct: 18 LLEDVFGYQQFRDGQQDIITTALNHSDSLVIMPTGGGKSLCYQIPALLLDGLTLVISPLI 77
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I + S+ +E+ ++ G +K+L+VSPER L DF++
Sbjct: 78 SLMKDQVDQLVANGIPAACIHSALTRDEIETVFSQLESGELKLLYVSPERVLMRDFIARL 137
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L +L+ VDEAHC+S+W H+FRP Y L L+ ++A+TATA TT +D+
Sbjct: 138 QQVKL-ALLAVDEAHCISQWGHDFRPEYAEL--GQLKQMFAPLPVMALTATADETTRQDI 194
Query: 371 MS--ALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
+S ALE P +L + R N++ ++ E+ + ++ S+ S + +
Sbjct: 195 ISRLALEQPYIHL--GSFERPNIRYTLL--------EKYKPLSQLLSYLASVRGQCGIIY 244
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ I LC+N + +YH+G+ DR+ +QE F + I +VVATVAFGMG++K
Sbjct: 245 CNSRKRVEQICEKLCENGLRAAAYHAGMSVNDRAYVQEAFQRDDIHIVVATVAFGMGINK 304
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V VIH+ +P ++E Y QE GRAGRDG + L D D+ + R
Sbjct: 305 PNVRFVIHHDIPRNIESYYQETGRAGRDGLPAEAVLLYDPADMAWLR 351
>gi|445060297|ref|YP_007385701.1| ATP-dependent DNA helicase RecQ [Staphylococcus warneri SG1]
gi|443426354|gb|AGC91257.1| ATP-dependent DNA helicase RecQ [Staphylococcus warneri SG1]
Length = 592
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 193/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GYD+FR GQ E I ++D ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 9 FGYDTFRPGQEEIISKIIDHRNVLGVLPTGGGKSICYQVPGLMLGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I+ F++SS ++ E + + G I+ L+V+PERF N FLS +
Sbjct: 69 QVDQLKAMGINAAFINSSLTQKQQKEIEQDLISGHIQFLYVAPERFENQYFLSQLRKVN- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + I+A+TATAT +D+M L
Sbjct: 128 IRLVAFDEAHCISKWGHDFRPSYQNVIQKVFTLPQDF-AIVALTATATAEVQQDIMDKLN 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ ++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IEANDEVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVTEHDEEAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L + + YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELQEVLESHKVKCTIYHAGLTNKEREAAQNDFLYDRVNVVIATNAFGMGIDKSNVRFVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|394991693|ref|ZP_10384493.1| YocI [Bacillus sp. 916]
gi|393807522|gb|EJD68841.1| YocI [Bacillus sp. 916]
Length = 592
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 195/342 (57%), Gaps = 12/342 (3%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
E LL +GYDS R GQ +AI+ V + +K+T+ ++PTG GKS+CYQIPA++ G T+
Sbjct: 3 EKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGTTI 62
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ+ L I +++S+Q ++ E + ++ GA ++ +++PER ++
Sbjct: 63 VISPLISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLTSS 122
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
+F+ I + + LV +DEAHC+S+W H+FRPSY + L I+A+TATAT
Sbjct: 123 EFIHILQNIT-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFNELKEPPVIIALTATATP 180
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D+ L I + R+NL V + G N+ Y+++ +KH
Sbjct: 181 EVHDDICKQLHIKKEQTVYTGFARENLTFKV-VKGENKDRFIERYLEK-------NKHEA 232
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ + ETD + L I+ YH G+ DR QE F +++I+V+VAT AFGM
Sbjct: 233 GIIYTATRKETDRLYEKLKRGGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGM 292
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK ++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 293 GIDKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLNSECVLLF 334
>gi|421079860|ref|ZP_15540796.1| ATP-dependent helicase RecQ [Pectobacterium wasabiae CFBP 3304]
gi|401705347|gb|EJS95534.1| ATP-dependent helicase RecQ [Pectobacterium wasabiae CFBP 3304]
Length = 608
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 203/347 (58%), Gaps = 16/347 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++LR +GY FR GQ E I L + ++++PTG GKSLCYQIPA+++ GLTLVV PL
Sbjct: 15 QVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + L+S+Q E+ E + + G IK+L+++PER FL
Sbjct: 75 ISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLTTDSFLD- 133
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
A ISL+ VDEAHC+S+W H+FRP Y L ++ R +A+TATA TT D
Sbjct: 134 HLAHWQISLIAVDEAHCISQWGHDFRPEYRAL--GQIKQRFPHLPFIALTATADETTRND 191
Query: 370 VMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
++ L++ S LIQ + R N++ ++ E+ +D+++ F + + +
Sbjct: 192 IVRLLDLH-SPLIQISSFDRPNIRYTLV--------EKFKPLDQLWMFVQGQRGKSGIIY 242
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ IS L +S +YH+G+ + R+++QE F + ++VVVATVAFGMG++K
Sbjct: 243 CNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGINK 302
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPADMAWLR 349
>gi|314933033|ref|ZP_07840399.1| ATP-dependent DNA helicase RecQ [Staphylococcus caprae C87]
gi|313654352|gb|EFS18108.1| ATP-dependent DNA helicase RecQ [Staphylococcus caprae C87]
Length = 592
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 195/335 (58%), Gaps = 15/335 (4%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY++FR GQ E I +LD ++T+ VLPTG GKSLCYQ+P ++L G T+V+ PL++LM D
Sbjct: 9 FGYETFRPGQKEIITKILDHRNTLGVLPTGGGKSLCYQVPGLMLGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ + + ++ G I+ L+V+PERF N+ FLS+ +
Sbjct: 69 QVDQLKAMGIKAAYLNSSLTQKQQIDIEQELKQGDIQFLYVAPERFENSYFLSLLRKVN- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+M L
Sbjct: 128 IHLVAFDEAHCISKWGHDFRPSYQSVIHKVFSLPQNF-TIVALTATATAEVQQDIMEKLN 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I + I+ + R NL V N +R +V + + H I+ S +
Sbjct: 187 IGKQDEIKTSTKRRNLIFRV-----NPTYQRQKFVVDYVTSHEGQAG--IIYCSTR---K 236
Query: 436 DLISRYLCDNSISVKS--YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ + +VKS YH+G+ K+R Q F +++ VVVAT AFGMG+DK +V
Sbjct: 237 QVEELNEALENENVKSTIYHAGLTNKEREESQNDFLYDRVEVVVATNAFGMGIDKSNVRY 296
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
V+HY++P +E Y QE GRAGRDG S C L +
Sbjct: 297 VVHYNMPGDIESYYQEAGRAGRDGLKSECILLFSE 331
>gi|418285775|ref|ZP_12898442.1| putative ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus 21209]
gi|365169336|gb|EHM60589.1| putative ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus 21209]
Length = 445
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 193/341 (56%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+
Sbjct: 2 MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVIS 61
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I FL+SS +E + + G I+ L+V+PERF N FL
Sbjct: 62 PLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFL 121
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT
Sbjct: 122 NMLQRIK-IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQ 179
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+ L I ++ I+ + R NL V N +R ++ + H I+
Sbjct: 180 QDIREKLNIAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIY 232
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L I YH+G+ K+R Q F ++++VVVAT AFGMG+D
Sbjct: 233 CSTRK-QVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 292 KSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|418308873|ref|ZP_12920461.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21194]
gi|365236642|gb|EHM77527.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21194]
Length = 483
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 193/341 (56%), Gaps = 11/341 (3%)
Query: 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248
+ + L +GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+
Sbjct: 2 MQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVIS 61
Query: 249 PLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ+ L + I FL+SS +E + + G I+ L+V+PERF N FL
Sbjct: 62 PLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFL 121
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
++ I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT
Sbjct: 122 NMLQRIK-IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQ 179
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D+ L I ++ I+ + R NL V N +R ++ + H I+
Sbjct: 180 QDIREKLNIAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIY 232
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S + + + + L I YH+G+ K+R Q F ++++VVVAT AFGMG+D
Sbjct: 233 CSTRK-QVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGID 291
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
K +V VIHY++P LE Y QE GRAGRDG S C L +
Sbjct: 292 KSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|417902280|ref|ZP_12546147.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21266]
gi|341843370|gb|EGS84597.1| ATP-dependent DNA helicase RecQ [Staphylococcus aureus subsp.
aureus 21266]
Length = 593
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 10 FGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKD 69
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I FL+SS +E + + G I+ L+V+PERF N FL++
Sbjct: 70 QVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIK- 128
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT +D+ L
Sbjct: 129 IHLVAFDEAHCISKWGHDFRPSYQSVISKVFTLPQDF-TIIALTATATVEVQQDIREKLN 187
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ I+ + R NL V N +R ++ + H I+ S + +
Sbjct: 188 IAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIYCSTRK-QV 239
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F ++++VVVAT AFGMG+DK +V VI
Sbjct: 240 EELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVI 299
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 300 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|387132182|ref|YP_006298154.1| ATP-dependent DNA helicase RecQ [Prevotella intermedia 17]
gi|386375030|gb|AFJ09244.1| ATP-dependent DNA helicase RecQ [Prevotella intermedia 17]
Length = 727
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/381 (36%), Positives = 206/381 (54%), Gaps = 24/381 (6%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A + NL L+ +G+D F+ Q I+ VL+ T +++PTG GKSLCYQ+P++I+ G
Sbjct: 2 AKEVNLTEKLKHFFGFDKFKGAQETIIRNVLEGNDTFVLMPTGGGKSLCYQLPSLIMEGT 61
Query: 244 TLVVCPLVALMIDQLRHLPPVIHG--------GFLSSSQRPEEVAETIRLIQVGAIKVLF 295
+V+ PL+ALM +Q+ VI+G +L+SS + E+ IQ G K+L+
Sbjct: 62 AIVISPLIALMKNQV----DVINGISEEDGVAHYLNSSLKKTEIDNVKADIQSGKTKLLY 117
Query: 296 VSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECI 355
V+PE D + F T +S +DEAHC+SEW H+FRP Y ++R ++ ++ I
Sbjct: 118 VAPESLNKEDSIEFFK-TVKVSFYAIDEAHCISEWGHDFRPEYRKIRQAV--DQIGKAPI 174
Query: 356 LAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFS 415
+A+TATAT D++ +L I + + R NL V N R ++
Sbjct: 175 IALTATATDKVRTDIVKSLGIEDCAEFKSSFNRPNLYYEVRPKKNEEDTNR-----QIIK 229
Query: 416 FHRSS--KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKI 473
F + + K I +S K E ++ L N I + YH+G+ ++ RS+ Q+ F I
Sbjct: 230 FIKQNLGKSGIIYCLSRKKVEE--LAAVLQANEIKAEPYHAGLDSETRSKTQDDFLMENI 287
Query: 474 RVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFR 533
V+VAT+AFGMG+DK DV VIHY +P+SLE Y QE GRAGRDG C +F +
Sbjct: 288 DVIVATIAFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGKCIVFYSKNDLKK 347
Query: 534 LRSLMYSDGVDEYAINKFLCQ 554
L + M V E I + L Q
Sbjct: 348 LENFMEGKPVAEQDIGRQLLQ 368
>gi|168210443|ref|ZP_02636068.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens B str.
ATCC 3626]
gi|170711523|gb|EDT23705.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens B str.
ATCC 3626]
Length = 724
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 197/338 (58%), Gaps = 15/338 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ YGY FR GQ E I +++ + ++PTG GKS+CYQIPA+IL G+T+V+ PL+
Sbjct: 7 ILKSFYGYSGFRKGQEEIINEIINGNDVVAIMPTGGGKSICYQIPALILEGVTVVISPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + + I +++S+ EE+ + ++ G IK+L+V+PER + +FL++
Sbjct: 67 SLMKDQVDAINSMGIESAYINSTLSNEEINNIFQSVKDGHIKILYVAPERLESMEFLNLV 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTLR 368
+ IS V VDEAHCVS+W H+FR SY + +LLR R + A TATAT +
Sbjct: 127 SNID-ISQVAVDEAHCVSQWGHDFRSSYKFIGRFINLLRKR---PVVSAFTATATEEVRK 182
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D++ LE+ + RDNL++ + N ++ Y+ + + +K +
Sbjct: 183 DIVKLLELNNPKVFVSGFDRDNLKIIIEKGVN-----KAHYI---LDYLKENKDVSGIIY 234
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
E D + + I YH+G+ ++R + QE F +K+ V+VAT AFGMG+DK
Sbjct: 235 CATRKEVDSLCELINSRGIGCTKYHAGLSDEERKKNQEDFVFDKVSVMVATNAFGMGIDK 294
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ VIH ++P+++E Y QEIGRAGRDG S C L
Sbjct: 295 PNIRYVIHNNMPKNIEGYYQEIGRAGRDGEKSECILIF 332
>gi|265765824|ref|ZP_06093865.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_16]
gi|263253492|gb|EEZ24957.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_16]
Length = 607
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 199/335 (59%), Gaps = 12/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR Q E I ++ KK +++++PTG GKS+CYQ+PA+++ G +V+ PL++
Sbjct: 11 LKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVISPLIS 70
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIF 310
LM DQ+ L I G L+SS E A R G +K+L++SPE+ L+ AD+L
Sbjct: 71 LMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKLLSEADYL--- 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+SL VDEAHC+S+W H+FRP Y R+ LR + ++A+TATA T D+
Sbjct: 128 LRDMTLSLFAVDEAHCISQWGHDFRPEYARM--GFLRNQFPNVPMIALTATADKITREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ + + R NL LSV G + + A +D + S Y + S
Sbjct: 186 IRQLQLRQPQIFISSFDRPNLSLSVK-RGYQPKEKSKAIIDFITRHRGESGIVYCMSRS- 243
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+T+ +++ L + I YH+G+ A+ R Q+ F +++I VV AT+AFGMG+DK +
Sbjct: 244 ---KTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSN 300
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIHY+LP+S+E + QEIGRAGRDG S LF
Sbjct: 301 VRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILF 335
>gi|395334419|gb|EJF66795.1| ATP-dependent DNA helicase [Dichomitus squalens LYAD-421 SS1]
Length = 702
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 191/655 (29%), Positives = 312/655 (47%), Gaps = 70/655 (10%)
Query: 193 LRLVYGYDSFRDGQLEAIK-MVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LR +G+ SFR Q I+ +++D ++ +++ PTG GKSL YQIPA+ L GLTLV+ PL+
Sbjct: 8 LRDTFGFSSFRLEQEAVIRRLLVDNENALVLFPTGGGKSLTYQIPALCLEGLTLVISPLI 67
Query: 252 ALMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
ALM DQ+ L V+ G L S+Q + + G++K+L+V+PER N F++
Sbjct: 68 ALMKDQVDAL--VMRGVKAASLDSTQDASKSGWVKNEVITGSMKMLYVAPERLNNEGFMA 125
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+ ISL+ VDE+HC+S+W +FRP Y+++ + ++VE +L +TATAT + +
Sbjct: 126 MMRRVR-ISLLAVDESHCISQWGASFRPEYLKI--ARFAEEMDVERVLCLTATATPSVSQ 182
Query: 369 DVMSALEIPL-SNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ + I + + + R NL L+V + Q + V S + I+
Sbjct: 183 DICGSFFIDRDAGVFRIPVYRPNLALNVEVFDTMAQK-----ISRVVSILQGRTGPAIVY 237
Query: 428 IS-GKHFE--TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
++ KH E + + Y D +I YH+G+P+++R R+Q F + +VVAT+AFGM
Sbjct: 238 VTLQKHAEEVANTLRSYQLDAAI----YHAGLPSEERGRVQLQFMESDRGIVVATIAFGM 293
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD 544
G+DK ++ VIH+ +P++LE Y QE+GRAGRDG LS+C++FL L D
Sbjct: 294 GIDKANIRQVIHFHMPKTLENYSQEVGRAGRDGSLSHCYMFLCATDLPILEGFARGDTCA 353
Query: 545 EYAINKFLCQVFTNGMNSHGKL-CSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLL 603
+ I ++ +V S L +L K+ S+++DI++ V+ LEL
Sbjct: 354 KRDIELWIQEVSLKQPASDSTLDFNLYKQ--SKEYDIRQNVLNLCYAQLELDYGYIRATT 411
Query: 604 PELKV----TCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGATTI 659
P + C N +LAD I +K + D A G
Sbjct: 412 PFYSIYDISRCDEN---GWSKVLADSSPAAKAIRTYWTSKGTKCQIDTMLTAERSGVERS 468
Query: 660 DVSNQLLNLKMRGEITYELKDPAYCYTIVE-VPS---DFCALSAHLTKWLSEVENCKVRK 715
D++ + ++ G IT + + + + +P+ D L+ + + EN V K
Sbjct: 469 DIARTVNGWELDGHITSKASQVRARFMVTKPLPTGTNDIKHLADQIYTGMVGRENEAVEK 528
Query: 716 LDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNKIGQSSPFLRAD 775
L ++ A + CL + + YF GD++ VP+ + F +
Sbjct: 529 LRKVVEFAT----------------NDDCLAQGLAVYF-GDEDA-VPDGMCGQCSFCTSG 570
Query: 776 IKV----FLQSNLNA------------KFTPRAVARILHGIASPAYPSTIWSKTH 814
V QS +A + PR +AR+ GI SP WS H
Sbjct: 571 AGVEFSPIAQSVPDAARLNKILDACPERDDPRLLARMAFGITSPRLTYGKWSTAH 625
>gi|422340643|ref|ZP_16421584.1| ATP-dependent DNA helicase RecQ [Treponema denticola F0402]
gi|325475483|gb|EGC78664.1| ATP-dependent DNA helicase RecQ [Treponema denticola F0402]
Length = 626
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 199/355 (56%), Gaps = 12/355 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR Q E I +L KK + V+PTG GKSLCYQ+PA+I G+T+VV PL+
Sbjct: 20 ILKQVFGYDEFRPFQKEIIDSLLQKKDVLAVMPTGGGKSLCYQVPALIFEGVTIVVSPLI 79
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + L+SS E+ A+ IR I+ G +K+L+V+PE L +D
Sbjct: 80 SLMHDQICGLETIGVEAVALNSSLDWEKYADNIRRIKNGEVKILYVAPET-LASDRCKEL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ + + +DEAHC+SEW H+FRP Y +L + +R L LA+TATAT D+
Sbjct: 139 LSSIKVDCLTIDEAHCISEWGHDFRPEYRQL--AEIRKLLKESACLAITATATEKVRSDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L++ R N+ L V E+ ++ F + K +
Sbjct: 197 KKILKLKTPKEFIAGFNRKNIFLEV--------KEKQKPFEQASDFLKEHKGESGIIYCF 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D ++ L + K YH+G+ + R + Q F ++ I ++VATVAFGMG++K +
Sbjct: 249 SRKQADTLAVQLSVLGYNAKPYHAGLSDELRQKTQNDFINDDIEIIVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
V VIH+ LP+S+E+Y QEIGRAGRDG ++ L F+L+ LM DE
Sbjct: 309 VRFVIHFDLPKSIEQYYQEIGRAGRDGNPAHALLLFSAADIFKLKFLMQDKSPDE 363
>gi|296327483|ref|ZP_06870029.1| ATP-dependent helicase RecQ [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296155309|gb|EFG96080.1| ATP-dependent helicase RecQ [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 606
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 194/333 (58%), Gaps = 11/333 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ YGYD+FR+GQ + I +L+K++ + ++ TGAGKS+CYQIPA+I GLT+++ PL
Sbjct: 7 KILKEYYGYDNFREGQEKIIDAILEKRNVLGIMTTGAGKSICYQIPALIFEGLTIIISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +L+S+ +E + + I+ G IK+L++SPER N FL+
Sbjct: 67 ISLMKDQVDSLRLIGIEASYLNSALTSDEYNKILFRIKRGKIKLLYISPERLENKFFLN- 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTL 367
F T IS+VVVDEAHCVS+W NFR SY+R+ L ++ LA TATAT
Sbjct: 126 FIKTVKISMVVVDEAHCVSQWGENFRRSYLRIADFVKYLSGETQIQT-LAFTATATPKIK 184
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE---VFSFHRSSKHYY 424
D++ L I + RDN+ V +N ++ +D + + R K
Sbjct: 185 VDIIEKLNIINPFIYIDYFNRDNIYFKVV---DNSGLDKDLDIDSKPFIIDYLRKHKGKS 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ D I YL SV YH G+ ++R + Q+LF + + ++VAT AFGM
Sbjct: 242 GIIYCSTRKNVDDIYSYLVGFDRSVTKYHGGMSKEEREKNQKLFLDDDVEIMVATNAFGM 301
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G++K ++ VIH ++P LE Y QE GRAGRDG
Sbjct: 302 GINKSNIRYVIHANIPADLESYYQEAGRAGRDG 334
>gi|288575145|ref|ZP_06393502.1| ATP-dependent DNA helicase RecQ [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570886|gb|EFC92443.1| ATP-dependent DNA helicase RecQ [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 603
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 195/333 (58%), Gaps = 11/333 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
DE LL+ ++GYD FR Q +AI V+ ++++PTG GKSLCYQIPA++ PG+ +
Sbjct: 2 DETPRGLLKRLFGYDEFRLNQGDAIDHVMGGGDCLVLMPTGGGKSLCYQIPAILRPGIGV 61
Query: 246 VVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL+ALM DQ+ L + +++S+ EE + R G + +L+V+PER +
Sbjct: 62 VISPLIALMHDQVNGLVQSGVRAAYMNSTMNYEEFVQVSRAAMRGELDLLYVAPERAMKP 121
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
F+ + SL S++ +DEAHCVS+W H+FRP Y+RL L RA V I A+TATA
Sbjct: 122 SFMDFLSRISL-SVIAIDEAHCVSQWGHDFRPEYLRL-GELGRAFPEVPRI-AVTATADE 178
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
T ++++S L++ + R N++ V + ++ + +D + HR+
Sbjct: 179 LTRKEILSRLDLNGGKVFVSGFDRPNIRYQVVM----KEKPKKQLLDFLRRSHRNDSGIV 234
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
K T+ I+++L DN I SYH G+ A++R +QE F + VVVAT+AFGM
Sbjct: 235 YCMTRRK---TESIAQWLRDNGIKALSYHGGMGAEERRTVQERFQDEEAVVVVATIAFGM 291
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G+DK DV V H +P+SL Y QE GRAGRDG
Sbjct: 292 GIDKPDVRFVAHLDMPKSLAAYYQETGRAGRDG 324
>gi|237744974|ref|ZP_04575455.1| ATP-dependent DNA helicase recQ [Fusobacterium sp. 7_1]
gi|229432203|gb|EEO42415.1| ATP-dependent DNA helicase recQ [Fusobacterium sp. 7_1]
Length = 606
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 195/333 (58%), Gaps = 11/333 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ YGYD+FR+GQ + I +L+K++ + ++ TGAGKS+CYQIPA+I GLT+++ PL
Sbjct: 7 KILKEYYGYDNFREGQEKIIDAILEKRNVLGIMTTGAGKSICYQIPALIFEGLTIIISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +L+S+ +E + + I+ G IK+L++SPER N FL+
Sbjct: 67 ISLMKDQVDSLRLIGIEASYLNSTLTSDEYNKILFRIKRGKIKLLYISPERLENKFFLN- 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTL 367
F T IS+VVVDEAHCVS+W NFR SY+R+ L ++ LA TATAT
Sbjct: 126 FIKTVKISMVVVDEAHCVSQWGENFRRSYLRIADFVKYLGGENQIQT-LAFTATATPKIK 184
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE---VFSFHRSSKHYY 424
D++ L I + RDN+ V +N ++ +D + + R K
Sbjct: 185 VDIIEKLNIVNPFIYIDYFNRDNIYFKVV---DNSGLDKDLDIDSKPFIIDYLRKHKGKS 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ D I YL + SV YH G+ ++R + Q+LF + + ++VAT AFGM
Sbjct: 242 GIIYCSTRKNVDDIYNYLVGFNRSVTKYHGGMTKEERDKNQKLFLDDDVEIMVATNAFGM 301
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G++K ++ VIH ++P LE Y QE GRAGRDG
Sbjct: 302 GINKSNIRYVIHANIPADLESYYQEAGRAGRDG 334
>gi|262273198|ref|ZP_06051014.1| ATP-dependent DNA helicase RecQ [Grimontia hollisae CIP 101886]
gi|262222776|gb|EEY74085.1| ATP-dependent DNA helicase RecQ [Grimontia hollisae CIP 101886]
Length = 616
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 203/344 (59%), Gaps = 14/344 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY S+RDGQ E I + + ++++PTG GKSLCYQIPA++ G+T+V+ PL+
Sbjct: 19 VLQQVFGYHSYRDGQKEIIDATIGGRDALVIMPTGGGKSLCYQIPALVRDGVTIVISPLI 78
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + L+SS PE ++T + ++ G +K+L+VSPER L DF+
Sbjct: 79 SLMKDQVDQLLANGVQAACLNSSMTPESQSDTWQALRNGNLKLLYVSPERILMRDFIERL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
A +L L+ VDEAHC+S+W H+FRP Y +L + L+ ++A+TATA TT +D+
Sbjct: 139 QAVTL-GLIAVDEAHCISQWGHDFRPEYAQLGS--LKQHFPGVPVMALTATADDTTRQDI 195
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L + ++ + R N++ ++ E+ + ++ F + +
Sbjct: 196 CQRLALVDPHIYLGSFDRPNIRYTLV--------EKHKPLAQLTQFLATQSGQSGIVYCN 247
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ ++ L ++I +YH+G+ A R+ +QE F + +++VVATVAFGMG++K +
Sbjct: 248 SRKRVEQVAEKLMGSNIRAAAYHAGMTADQRAWVQEAFQRDDVQIVVATVAFGMGINKPN 307
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYF 532
V V+HY +P ++E Y QE GRAGRDG + LF D DI +
Sbjct: 308 VRFVVHYDIPRNIESYYQETGRAGRDGLPAEAILFYDPSDIGWL 351
>gi|449103687|ref|ZP_21740431.1| ATP-dependent DNA helicase RecQ [Treponema denticola AL-2]
gi|448964529|gb|EMB45199.1| ATP-dependent DNA helicase RecQ [Treponema denticola AL-2]
Length = 626
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 199/355 (56%), Gaps = 12/355 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR Q E I +L KK + V+PTG GKSLCYQ+PA+I G+T+VV PL+
Sbjct: 20 ILKQVFGYDEFRPFQKEIIDNLLQKKDVLAVMPTGGGKSLCYQVPALIFEGVTIVVSPLI 79
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + L+SS E+ A+ IR I+ G +K+L+V+PE L +D
Sbjct: 80 SLMHDQICGLETIGVEAVALNSSLDWEKYADNIRRIKNGEVKILYVAPET-LASDRCKEL 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ + + +DEAHC+SEW H+FRP Y +L + +R L LA+TATAT D+
Sbjct: 139 LSSIKVDCLTIDEAHCISEWGHDFRPEYRQL--AEIRKLLKESACLAITATATEKVRSDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L++ R N+ L V E+ ++ F + K +
Sbjct: 197 KKILKLKTPKEFIAGFNRKNIFLEV--------KEKQKPFEQASDFLKEHKGESGIIYCF 248
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D ++ L + K YH+G+ + R + Q F ++ I ++VATVAFGMG++K +
Sbjct: 249 SRKQADTLAVQLSVLGYNAKPYHAGLSDELRQKTQNDFINDDIEIIVATVAFGMGINKPN 308
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
V VIH+ LP+S+E+Y QEIGRAGRDG ++ L F+L+ LM DE
Sbjct: 309 VRFVIHFDLPKSIEQYYQEIGRAGRDGNPAHALLLFSAADIFKLKFLMQDKSPDE 363
>gi|325954269|ref|YP_004237929.1| ATP-dependent DNA helicase RecQ [Weeksella virosa DSM 16922]
gi|323436887|gb|ADX67351.1| ATP-dependent DNA helicase RecQ [Weeksella virosa DSM 16922]
Length = 731
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 210/400 (52%), Gaps = 28/400 (7%)
Query: 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242
E ++L L+ +GYD F+ Q E IK +L+ + +++PTG GKS+CYQ+PA++ G
Sbjct: 3 ETHTKDLSSYLKKYFGYDQFKGQQEEIIKTLLNNQDVFVLMPTGGGKSMCYQLPALMSEG 62
Query: 243 LTLVVCPLVALM---IDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
+ ++V PL+ALM +D LR + L+SS E + I+ G K+L+V+PE
Sbjct: 63 VAIIVSPLIALMKNQVDALRGISTNEVAHVLNSSLNKSETKIVMDDIRAGKTKMLYVAPE 122
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+++ F T IS +DEAHC+SEW H+FRP Y L++ + ++ I+A+T
Sbjct: 123 SLTKEEYIDFFK-TVKISFFAIDEAHCISEWGHDFRPEYRNLKSII--QKIGNAPIIALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF--H 417
ATAT D+ L + + + + + R NL V N + E+ F
Sbjct: 180 ATATPKVQEDIQKTLGMQDARVFKDSFNRPNLFYEVRPKINQDK--------EIVKFIKK 231
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
R K + +S K E +++ L N I YH+G+ AK RS+ Q++F + VVV
Sbjct: 232 RQGKSGVVYCLSRKKVEE--LTQLLQVNGIKAIPYHAGLDAKTRSKHQDMFLMEDVDVVV 289
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
AT+AFGMG+DK DV VIHY +P+SLE Y QE GRAGRDG C F D +L
Sbjct: 290 ATIAFGMGIDKPDVRFVIHYDIPKSLESYYQETGRAGRDGGEGECVAFYDYKDIEKLEKF 349
Query: 538 MYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRK 577
+ S V E I GM ++ + + S SR+
Sbjct: 350 LASKPVAEREI----------GMQLLNEVAAYAETSMSRR 379
>gi|384547000|ref|YP_005736253.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
ED133]
gi|298694050|gb|ADI97272.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
ED133]
Length = 593
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 10 FGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKD 69
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I FL+SS +E + + G I+ L+V+PERF N FL++
Sbjct: 70 QVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIK- 128
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT +D+ L
Sbjct: 129 IHLVAFDEAHCISKWGHDFRPSYKNVISKVFTLPQDF-TIIALTATATVEVQQDIREKLN 187
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ I+ + R NL V N +R ++ + H I+ S + +
Sbjct: 188 IAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIYCSTRK-QV 239
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F ++++VVVAT AFGMG+DK +V VI
Sbjct: 240 EELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVI 299
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 300 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|290477101|ref|YP_003470014.1| ATP-dependent DNA helicase [Xenorhabdus bovienii SS-2004]
gi|289176447|emb|CBJ83256.1| ATP-dependent DNA helicase [Xenorhabdus bovienii SS-2004]
Length = 608
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 135/352 (38%), Positives = 200/352 (56%), Gaps = 26/352 (7%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++LR +GY FR GQ + I VLD + ++V+PTG GKSLCYQIPA+I GLTLVV PL
Sbjct: 15 QVLRKTFGYQQFRPGQQQVIDAVLDGRDCLVVMPTGGGKSLCYQIPALINNGLTLVVSPL 74
Query: 251 VALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + L+S+Q E+ + I+ + G+IK+L+++PER + +FL
Sbjct: 75 ISLMKDQVDQLRANGVEAECLNSTQNREQQVDIIQRCRQGSIKLLYIAPERLVTDNFLDQ 134
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ L+ VDEAHC+S+W H+FRP Y L R R +A+TATA TT +D
Sbjct: 135 LHDWHPV-LLAVDEAHCISQWGHDFRPEYRAL--GQFRRRFPELPFIALTATADKTTRQD 191
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV------DEVFSFHRSSKHY 423
+ LE L D L + LS +R N R V D+++SF R +
Sbjct: 192 ITRLLE-----------LHDPL---IHLSSFDRPNIRYTLVEKYKPLDQLWSFVRGQQGK 237
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
+ + + + L +SV YH+G+ R+ +Q+ F + ++VVVATVAFG
Sbjct: 238 SGIIYCNSRTKVEETAERLQKRGLSVAPYHAGLDNNQRAWVQDAFQRDDLQVVVATVAFG 297
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
MG++K +V V+H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILFFDPADMAWLR 349
>gi|397169212|ref|ZP_10492647.1| ATP-dependent DNA helicase [Alishewanella aestuarii B11]
gi|396089292|gb|EJI86867.1| ATP-dependent DNA helicase [Alishewanella aestuarii B11]
Length = 605
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 210/370 (56%), Gaps = 15/370 (4%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
E L +L+ +GY S+R GQ E I VL + ++LPTG GKSLCYQ+PA+ LPG+TLV
Sbjct: 3 EQLLAVLKQSFGYSSWRSGQQEIISAVLQGRDCFVLLPTGGGKSLCYQLPALQLPGVTLV 62
Query: 247 VCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
V PL++LM DQ+ L I +++SS E V + + ++ G +K+L+V+PER L
Sbjct: 63 VSPLMSLMKDQVDSLRANGIAAAYVNSSLSREAVLDVLNQLRYGELKLLYVAPERLLQPS 122
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
FL +SL +DEAHC+S+W H+FRP YM L S L+ R +A+TATA
Sbjct: 123 FLERLQEVG-VSLFAIDEAHCISQWGHDFRPDYMAL--SQLKQRFPGVPFIALTATADPA 179
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
T +D++ L + + + + R N++ +V E+ ++++ ++ + ++
Sbjct: 180 TQQDILQQLGLSNPYIHRGSFDRPNIRYTV--------QEKFRPLEQLLAYLKQQENQSG 231
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
+ + D ++ L + V +YH+G + +R R+Q+ F + I ++VATVAFGMG
Sbjct: 232 IIYCSSRRKVDELTAQLQERGYKVAAYHAGHDSTERQRVQDAFKRDDINLIVATVAFGMG 291
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD---G 542
+DK ++ V+H+ LP ++E Y QE GRAGRDG + L D R++ + ++ G
Sbjct: 292 VDKPNIRFVVHFELPRTIEAYYQETGRAGRDGVAAEAVLLFDPADIGRMKRWLEAEENPG 351
Query: 543 VDEYAINKFL 552
E +FL
Sbjct: 352 RAEVVWQRFL 361
>gi|422940160|ref|ZP_16967508.1| ATP-dependent helicase RecQ [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
gi|339890095|gb|EGQ79276.1| ATP-dependent helicase RecQ [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 371
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/333 (39%), Positives = 194/333 (58%), Gaps = 11/333 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L+ YGYD+FR+GQ + I +L+K++ + V+ TGAGKS+CYQIPA+I GLT+V+ PL
Sbjct: 7 RILKEYYGYDNFREGQEKIIDAILEKRNVLGVMTTGAGKSICYQIPALIFEGLTIVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +L+S+ +E + + I+ G IK+L++SPER N FL+
Sbjct: 67 ISLMKDQVDSLRLIGIEASYLNSTLTSDEYNKILFRIKRGKIKLLYISPERLENKFFLN- 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTL 367
F T IS+VVVDEAHCVS+W NFR SY+R+ L ++ LA TATAT
Sbjct: 126 FIKTVKISMVVVDEAHCVSQWGENFRRSYLRIADFVKYLGGENQIQT-LAFTATATPKIK 184
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE---VFSFHRSSKHYY 424
D++ L I + RDN+ V +N ++ +D + + R K
Sbjct: 185 VDIIEKLNIVNPFIYVDYFNRDNIYFKVV---DNSGLDKDLDIDSKPFIIDYLRKHKGKS 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ D I YL SV YH G+ ++R + Q+LF + + ++VAT AFGM
Sbjct: 242 GIIYCSTRKNVDDIYNYLKSFDRSVTKYHGGMTKEERDKNQKLFLDDDVEIMVATNAFGM 301
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G++K ++ VIH ++P LE Y QE GRAGRDG
Sbjct: 302 GINKSNIRYVIHANIPADLESYYQEAGRAGRDG 334
>gi|417802087|ref|ZP_12449159.1| ATP-dependent DNA helicase, RecQ family [Staphylococcus aureus
subsp. aureus 21318]
gi|417904658|ref|ZP_12548480.1| putative ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus 21269]
gi|418654233|ref|ZP_13216146.1| ATP-dependent DNA helicase, RecQ family [Staphylococcus aureus
subsp. aureus IS-99]
gi|418660047|ref|ZP_13221693.1| ATP-dependent DNA helicase, RecQ family [Staphylococcus aureus
subsp. aureus IS-111]
gi|418871292|ref|ZP_13425672.1| ATP-dependent DNA helicase, RecQ family [Staphylococcus aureus
subsp. aureus IS-125]
gi|334275601|gb|EGL93889.1| ATP-dependent DNA helicase, RecQ family [Staphylococcus aureus
subsp. aureus 21318]
gi|341846564|gb|EGS87756.1| putative ATP-dependent DNA helicase RecQ [Staphylococcus aureus
subsp. aureus 21269]
gi|375016519|gb|EHS10158.1| ATP-dependent DNA helicase, RecQ family [Staphylococcus aureus
subsp. aureus IS-99]
gi|375033358|gb|EHS26556.1| ATP-dependent DNA helicase, RecQ family [Staphylococcus aureus
subsp. aureus IS-111]
gi|375368484|gb|EHS72397.1| ATP-dependent DNA helicase, RecQ family [Staphylococcus aureus
subsp. aureus IS-125]
Length = 371
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 190/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY++FR GQ E I VLD ++ + VLPTG GKS+CYQ+P ++L G T+V+ PL++LM D
Sbjct: 10 FGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKD 69
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I FL+SS +E + + G I+ L+V+PERF N FL++
Sbjct: 70 QVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIK- 128
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I LV DEAHC+S+W H+FRPSY + + + + I+A+TATAT +D+ L
Sbjct: 129 IHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDF-TIIALTATATVEVQQDIREKLN 187
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I ++ I+ + R NL V N +R ++ + H I+ S + +
Sbjct: 188 IAQTDQIKTSTKRRNLIFKV-----NPTYQRQKFILDYIKTHDEDAG--IIYCSTRK-QV 239
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F ++++VVVAT AFGMG+DK +V VI
Sbjct: 240 EELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVI 299
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 300 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 332
>gi|197287158|ref|YP_002153030.1| ATP-dependent DNA helicase RecQ [Proteus mirabilis HI4320]
gi|227357149|ref|ZP_03841518.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
gi|425070259|ref|ZP_18473373.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW6]
gi|425074080|ref|ZP_18477185.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW4]
gi|194684645|emb|CAR46565.1| ATP-dependent DNA helicase [Proteus mirabilis HI4320]
gi|227162681|gb|EEI47648.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
gi|404594320|gb|EKA94907.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW4]
gi|404595525|gb|EKA96065.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW6]
Length = 609
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 202/355 (56%), Gaps = 34/355 (9%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR +GY FR GQ E I ++ + ++V+PTG GKSLCYQIPA++L GLT+VV PL+
Sbjct: 16 ILRETFGYQQFRPGQQEIIDTIITGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 252 ALMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
+LM DQ+ L +HG FL+S+Q +E + Q G IK+L+++PER + FL
Sbjct: 76 SLMKDQVDQL--CLHGIDAAFLNSTQSRDEQLQVQMRCQRGEIKLLYIAPERLMMESFLH 133
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+L+ VDEAHC+S+W H+FRP Y + LLR L I+A+TATA TT
Sbjct: 134 HLVQWQ-PALLAVDEAHCISQWGHDFRPEYRGI--GLLRQYLPDVPIIALTATADNTTRH 190
Query: 369 DVMS--ALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV------DEVFSFHRSS 420
D+++ AL PL V +S +R N R V D+++ F R
Sbjct: 191 DIINQLALRTPL----------------VHISSFDRPNIRYTLVEKYKPLDQLWLFIRGQ 234
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480
K + + + + L +S+ +YH+G+ R+++Q+ F + +++VVATV
Sbjct: 235 KGKSGIIYCNSRSKVEETAERLGKRGLSIAAYHAGMDIATRAKVQDAFQRDDLQIVVATV 294
Query: 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
AFGMG++K +V V+H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAQAVLFYDPADMAWLR 349
>gi|110636721|ref|YP_676928.1| ATP-dependent DNA helicase RecQ [Cytophaga hutchinsonii ATCC 33406]
gi|110279402|gb|ABG57588.1| ATP-dependent DNA helicase RecQ [Cytophaga hutchinsonii ATCC 33406]
Length = 725
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 195/340 (57%), Gaps = 13/340 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ V+GYD FR Q E I VL K T +++PTGAGKSLCYQ+PA+ LPG+ +V+ PL+A
Sbjct: 13 LKSVFGYDRFRGEQEEIINNVLSGKDTFVIMPTGAGKSLCYQLPAISLPGVAIVISPLIA 72
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM +Q+ L ++ FL+S+ E+ + G IK+L+V+PE D + +F
Sbjct: 73 LMKNQVDQLNAFGVNAQFLNSTLTKAEINRVKKETLNGEIKLLYVAPESLTKEDNI-LFL 131
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ IS V +DEAHC+SEW H+FRP Y ++ S++ + N I+A+TATAT D+
Sbjct: 132 KKAAISFVAIDEAHCISEWGHDFRPEYRKIH-SIIESINNNIPIIALTATATPKVQLDIQ 190
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L++ + L + + R+NL V G+ ++ F R + I +S K
Sbjct: 191 KNLQMDDAVLFKSSFNRENLFYEVRPKGDTKKKLIK------FIKARKGQSGIIYCLSRK 244
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E I+ L N + YH+G+ R Q+ F + V+VAT+AFGMG+DK DV
Sbjct: 245 KVEE--IAELLRVNDVKALPYHAGLEPAVRMGNQDAFLNEDADVIVATIAFGMGIDKPDV 302
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDI 529
V+HY P+SLE Y QE GRAGRDG +C +F ++DI
Sbjct: 303 RFVVHYDTPKSLEGYYQETGRAGRDGNEGHCLMFYSMNDI 342
>gi|423074239|ref|ZP_17062971.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium hafniense DP7]
gi|361854957|gb|EHL06984.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium hafniense DP7]
Length = 728
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 193/336 (57%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
LL+ +GY FR GQ + I +L T+ ++PTGAGKSL YQIPA++ G+TLV+ PL+
Sbjct: 8 LLKRYFGYSQFRKGQDKVIHSLLQSSDTVAIMPTGAGKSLSYQIPALLFDGVTLVISPLI 67
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + F++SS +E E I + G K+L+++PER FL++
Sbjct: 68 SLMKDQVDSLHEAGVPATFINSSLSMQEAWERINKARQGRYKLLYIAPERLEAESFLTLL 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + IS V VDEAHCVS+W H+FRPSY ++ A + + I A TATAT D+
Sbjct: 128 ESLT-ISFVAVDEAHCVSQWGHDFRPSYRKIGA-FVESLPRRPIIGAFTATATQEVREDI 185
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+S L + + R NL+ S +L G N++ S Y + HRS + +
Sbjct: 186 VSLLTLESPQVFVTGFDRPNLKFS-TLKGENKKVFISTYCLQ----HRSESG---IIYAA 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D + YL + V YH+G+ DR + QE F +K ++VAT AFGMG+DK +
Sbjct: 238 TRKEVDQLQTYLKGKGLLVGKYHAGMNDLDRQKAQEAFLYDKTSLMVATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHY++P+++E Y QE GRAGRDG + C L
Sbjct: 298 VRFVIHYNMPKNMEAYYQEAGRAGRDGEPAECILLF 333
>gi|159901065|ref|YP_001547312.1| ATP-dependent DNA helicase RecQ [Herpetosiphon aurantiacus DSM 785]
gi|159894104|gb|ABX07184.1| ATP-dependent DNA helicase, RecQ family [Herpetosiphon aurantiacus
DSM 785]
Length = 864
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 210/360 (58%), Gaps = 23/360 (6%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
LR +G FR GQ + I+ V+ +ST+ ++PTGAGKSLCYQ+PA++LP T+V+ PL+A
Sbjct: 31 LREHFGLPGFRSGQQQVIERVMAGRSTLALMPTGAGKSLCYQLPALLLPHATIVISPLIA 90
Query: 253 LMIDQLRHLPPVIH--GGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
LM DQL LP + F++S+ +EV +R + G K+++V+PER FL
Sbjct: 91 LMKDQLDGLPEAVRERATFINSAIPFDEVRTRLRGLSEGRYKLVYVAPERLRQRQFLYAL 150
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
ISL VVDEAHCVS W +FRP Y+ +R +L L +L +TATA+ T + +
Sbjct: 151 QQVG-ISLFVVDEAHCVSLWGFSFRPDYLFIREAL--RELGNPLVLGLTATASPATEKAI 207
Query: 371 ---MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+ LE +N+ R NL + + +N++ +++A + S I+
Sbjct: 208 CEQLGDLETVRTNV-----FRPNLHFEL-IKASNKEKKQAA----ILSLCSQIDGAIIVY 257
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
++ + ++ L + ++YH+G P DR IQ+ F + RV+VAT+AFGMG+D
Sbjct: 258 ARSRN-SCEELAEQLRKTGVVAEAYHAGCP--DRDAIQDRFMRGETRVIVATIAFGMGVD 314
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD--GVDE 545
KRDV AVIH +LP+SLE+Y QE GRAGRDG++S C + + +L+ + S GV+E
Sbjct: 315 KRDVRAVIHANLPKSLEDYAQEAGRAGRDGQISRCIMLYNFFDKRQLKEWLESSHFGVEE 374
>gi|333396947|ref|ZP_08478760.1| ATP-dependent DNA helicase RecQ [Leuconostoc gelidum KCTC 3527]
Length = 602
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 196/327 (59%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD+FR GQL+ I+ VL K + ++PTG GKS+ YQ+PAM+ G+TLV+ PL+
Sbjct: 9 ILKEKFGYDNFRTGQLDVIEKVLAHKHALAIMPTGGGKSITYQLPAMLFDGITLVISPLI 68
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I FL+S+ + A+ + ++ G K+L+VSPER + F F
Sbjct: 69 SLMKDQVDGLDAMGIDATFLNSTLSGQVQAQRMSDLRSGYYKMLYVSPERLEISSFFD-F 127
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I LV +DEAH +S+W H+FRPSY+ + L + N +L +TATAT +++
Sbjct: 128 IQQLPIELVAIDEAHVMSQWGHDFRPSYLNILPLLAKIPGN-PAVLGLTATATDRVRQNL 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L + + I RDNL L ++ + + RQ YV E + R +K + +
Sbjct: 187 QQLLGVADEDTILTGFARDNLALKIAHNVDKRQ-----YVQE---YLRENKDQSGIIYAA 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + +L + YH+G+P ++R +QE F ++++V+VAT AFGMG++K +
Sbjct: 239 TRKQVDELYEFLNKKGVKAGHYHAGLPERERQAMQESFLFDEVQVMVATNAFGMGINKPN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHYS+P ++E Y QEIGRAGRDG
Sbjct: 299 VRFVIHYSVPGNIEAYYQEIGRAGRDG 325
>gi|376003245|ref|ZP_09781059.1| ATP-dependent DNA helicase [Arthrospira sp. PCC 8005]
gi|375328405|emb|CCE16812.1| ATP-dependent DNA helicase [Arthrospira sp. PCC 8005]
Length = 739
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 141/360 (39%), Positives = 205/360 (56%), Gaps = 16/360 (4%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A ++L + L+ +GYDSFR GQ E I+ VL K+ + ++PTG GKSLC+Q+PA++ PGL
Sbjct: 9 AQPQSLQQCLKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPGL 68
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
TLVV PL+ALM DQ+ L I FL+S+ E + I G IK+L+V+PER L
Sbjct: 69 TLVVSPLIALMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQIKLLYVAPERLL 128
Query: 303 NADFLSI---FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ FL A IS +V+DEAHCVS+W H+FRP Y +++ +R+R +A+T
Sbjct: 129 SPQFLEFLDRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQ--VRSRYPHVPAIALT 186
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATAT D++ + + + + R NL V + +R + +V
Sbjct: 187 ATATERVRFDIIKQIVLKQPYVHVASFYRSNLYYQVI---PKQPKKRFTQLLKVIESMSG 243
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
S Y S K E ++ L ++I YH+G+ DR F + +R++VAT
Sbjct: 244 SGIIYC--SSRKRVEE--VALKLQHHNIQALPYHAGMADSDRLESHTRFIRDDVRIIVAT 299
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539
+AFGMG+DK DV VIHY LP+SLE Y QE GRAGRDG+ + C LF +Y ++++ Y
Sbjct: 300 IAFGMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFF---SYGDMKTIEY 356
>gi|392426734|ref|YP_006467728.1| ATP-dependent DNA helicase, RecQ-like protein [Desulfosporosinus
acidiphilus SJ4]
gi|391356697|gb|AFM42396.1| ATP-dependent DNA helicase, RecQ-like protein [Desulfosporosinus
acidiphilus SJ4]
Length = 731
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 199/336 (59%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GY FRDGQ + I+ +L K T+ ++PTGAGKSL YQ+PA+I G TLV+ PL+
Sbjct: 9 VLQKYFGYTQFRDGQQKVIESLLMGKDTLAIMPTGAGKSLAYQVPALIFQGTTLVISPLI 68
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + F++SS +EV I + G K+L+++PER + +F ++
Sbjct: 69 SLMKDQVDALQQFGVSATFINSSLSLKEVRSRIARVLHGDYKLLYIAPERLESENFRTLL 128
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ + +S + +DEAHCVS+W H+FRPSY++L +R+ I A TATAT RD+
Sbjct: 129 ESLN-VSFLAIDEAHCVSQWGHDFRPSYLQL-GPFVRSLPQKPLIGAFTATATEEVQRDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ N+ R NL + +L G N++ A++ + H+ + +G
Sbjct: 187 VRLLQLDTPNVYVTGFDRPNLSFT-TLRGENKK----AFILDYVQVHKDQSG---IIYAG 238
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + +L + + V YH+G+ +R + QE F ++ ++VAT AFGMG+DK +
Sbjct: 239 TRKDVDQLQAFLAKHGLKVGKYHAGMNDDERKKHQEDFLFDETLIMVATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHY++P+++E Y QE GRAGRDG C L
Sbjct: 299 VRYVIHYNMPKNMEAYYQEAGRAGRDGEPGECILLF 334
>gi|393200845|ref|YP_006462687.1| superfamily II DNA helicase [Solibacillus silvestris StLB046]
gi|327440176|dbj|BAK16541.1| superfamily II DNA helicase [Solibacillus silvestris StLB046]
Length = 587
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 192/334 (57%), Gaps = 11/334 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR GQ + I VL+ T++++PTG GKSLCYQIPA+ + G TLV+ PL++
Sbjct: 9 LKTNFGYDSFRPGQTQIIDNVLNNNDTLVIMPTGGGKSLCYQIPALCMEGTTLVISPLIS 68
Query: 253 LMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I +++SS EEV + +Q G IK+L+++PER N F +
Sbjct: 69 LMKDQVDMLVSSGISAAYINSSLSYEEVQNVMYGVQSGKIKLLYIAPERLENERFCNELA 128
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ + L+ +DEAHC+S+W H+FRPSY ++ LL ++A+TATAT D+
Sbjct: 129 QIN-VPLLAIDEAHCISQWGHDFRPSYRSIQ-QLLHLWDKKPTVIALTATATEEVSADIQ 186
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L I N R+NL SV L N + AY+ + + + I + K
Sbjct: 187 QLLSIEKENTFITGFARENLSFSVLLGEN-----KEAYIKKYVKANENEAG-IIYAATRK 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
E+ + L + YH G+ +DR+ Q F +++++++VAT AFGMG++K +V
Sbjct: 241 SVES--VYEMLNKAGFAAGKYHGGMFEEDRTYEQNRFLNDEVQIMVATNAFGMGINKTNV 298
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V+HY++P ++E Y QE GRAGRDG S C L
Sbjct: 299 RYVLHYNMPRNMESYYQEAGRAGRDGLDSECILL 332
>gi|398396904|ref|XP_003851910.1| hypothetical protein MYCGRDRAFT_43325 [Zymoseptoria tritici IPO323]
gi|339471790|gb|EGP86886.1| hypothetical protein MYCGRDRAFT_43325 [Zymoseptoria tritici IPO323]
Length = 691
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 147/428 (34%), Positives = 229/428 (53%), Gaps = 40/428 (9%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP---------- 241
+LR +G ++FR Q AI +LD +S+++V PTG GKSLCYQ+PA+
Sbjct: 47 VLRERFGLNAFRLKQEAAIARLLDGESSVVVFPTGGGKSLCYQVPALCFKILDKERGERQ 106
Query: 242 -----GLTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLF 295
G+TLVV PL+ALM DQ+ L I + S++ EE +T+ ++ G + +L+
Sbjct: 107 GKGEQGITLVVSPLIALMKDQVDALHRKGISAAVMDSTKTKEEYLQTVDAMRNGTLDILY 166
Query: 296 VSPERFLNADFL-SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC 354
+PER N F+ S+ + L+ VDEAHC+SEW H+FRP Y L+ + + E
Sbjct: 167 CAPERLNNEGFVASMANVPGGVRLLAVDEAHCISEWGHSFRPDY--LKVARFAKEIQAER 224
Query: 355 ILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVS--LSGNNRQNERSAYVDE 412
++ +TATAT + +DV A +IP L + + R NL+L LS + + A++
Sbjct: 225 VICLTATATPSVAQDVCRAFDIPEEGLFRTSTYRSNLRLHAQSYLSKKDSYPKLRAFLK- 283
Query: 413 VFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK 472
++H S+ Y Q +T+ ++ L + + +H+G+ +++ QE F
Sbjct: 284 --AYHGSTIIYVTQQK-----QTEELAGQLRTHGFKARHFHAGMDKIEKTHCQEAFMKAN 336
Query: 473 IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDIT 530
+VVAT+AFGMG+DK ++ +V+HY+ P SLE Y QEIGRAGRDG S C L+L DD+
Sbjct: 337 DMIVVATIAFGMGIDKANIRSVVHYAAPSSLESYSQEIGRAGRDGLESQCMLYLCADDL- 395
Query: 531 YFRLRSLMYSDGVDEYAINKFLCQVF----TNGMNSHGKLCSLVKESASRKFDIKEEVML 586
+ R S D + ++ + L VF + +H SR+FDIK +
Sbjct: 396 HLR-ESFARGDLPSKSSVRRLLQDVFKLHPSPAPENH---IEANFNQQSREFDIKANALG 451
Query: 587 TLLTCLEL 594
+ LEL
Sbjct: 452 NIYAQLEL 459
>gi|225175907|ref|ZP_03729899.1| ATP-dependent DNA helicase RecQ [Dethiobacter alkaliphilus AHT 1]
gi|225168495|gb|EEG77297.1| ATP-dependent DNA helicase RecQ [Dethiobacter alkaliphilus AHT 1]
Length = 591
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 199/336 (59%), Gaps = 11/336 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY SF+DGQ + ++ +L +++T+ V+PTGAGKS+CYQ+P+++ G+TLVV PL+
Sbjct: 9 VLEKVFGYPSFKDGQAQVVESLLSQRNTLAVMPTGAGKSICYQLPSLLFDGVTLVVSPLI 68
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L + + F++SS + EV + + G K+++V+PER DF +
Sbjct: 69 ALMKDQVDALGSLGVPATFINSSLKGSEVKQRMLDAAAGRYKLIYVAPERLEAEDFRQLV 128
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+S + VDEAHCVS+W H+FRPSY ++ A +++ + A TATAT +D+
Sbjct: 129 DKIH-VSFIAVDEAHCVSQWGHDFRPSYRKI-APFVQSLPRHPLVGAFTATATPEIKQDI 186
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L + +N RDNL SV L G N++ Y+ R S+ I +
Sbjct: 187 ARLLSLQDANTFVTGFNRDNLYFSV-LRGENKKEFILDYLAA-----RPSQPGIIYAATR 240
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K E D + L N ++ YH+G+ +R++ QE F + + V+VAT AFGMG+DK +
Sbjct: 241 K--EVDNLYEALQKNGVACGRYHAGMREAERAQSQEAFLRDDLLVMVATNAFGMGIDKSN 298
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V V+HY++P+++E Y QE GRAGRDG C L
Sbjct: 299 VRFVVHYNMPKNMEAYYQEAGRAGRDGERGECILLF 334
>gi|449127039|ref|ZP_21763313.1| ATP-dependent DNA helicase RecQ [Treponema denticola SP33]
gi|448944707|gb|EMB25584.1| ATP-dependent DNA helicase RecQ [Treponema denticola SP33]
Length = 626
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 202/356 (56%), Gaps = 14/356 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR Q E I +L KK + V+PTG GKSLCYQ+PA+I G+T+VV PL+
Sbjct: 20 ILKQVFGYDEFRPFQKEIIDSLLQKKDVLAVMPTGGGKSLCYQVPALIFEGVTIVVSPLI 79
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + + L+SS E+ A+ IR I+ G +K+L+V+PE ++ +
Sbjct: 80 SLMHDQICGLETIGVEAVALNSSLDWEKYADNIRRIKNGEVKILYVAPETLVSERCKELL 139
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
++ + + +DEAHC+SEW H+FRP Y +L + +R L LA+TATAT D+
Sbjct: 140 SSIK-VDCLTIDEAHCISEWGHDFRPEYRQL--AEIRKLLKESVCLAITATATEKVRSDI 196
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERS-AYVDEVFSFHRSSKHYYILQIS 429
L++ R N+ L V ++ ++S E HR I S
Sbjct: 197 KKMLKLKTPKEFVAGFNRKNIFLEV------KEKQKSFEQASEFLKEHRGESGI-IYCFS 249
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K + D ++ L + K YH+G+ + R + Q F ++ I ++VATVAFGMG++K
Sbjct: 250 RK--QADTLAVQLSVLGYNAKPYHAGLSDELRQKTQNDFINDDIEIIVATVAFGMGINKP 307
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
+V VIH+ LP+S+E+Y QEIGRAGRDG ++ L F+L+ LM DE
Sbjct: 308 NVRFVIHFDLPKSIEQYYQEIGRAGRDGNPAHALLLFSAADIFKLKFLMQDKSPDE 363
>gi|443476000|ref|ZP_21065927.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
gi|443019101|gb|ELS33248.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
Length = 769
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 136/360 (37%), Positives = 208/360 (57%), Gaps = 15/360 (4%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
++ ++L + L+ +GY+SFR GQ E I L + T+ ++PTG GKS+C+Q+PA++ G+
Sbjct: 29 SNSDSLQQALKQYFGYESFRAGQREIIDAHLAGRDTLAIMPTGGGKSICFQLPALLKTGV 88
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ E + + I GAIK+++V+PER
Sbjct: 89 TIVVSPLIALMQDQVTALKENGIGATFLNSTLSGRETNQRSQAILNGAIKLIYVAPERLF 148
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+FL+I I+ +DEAHCVSEW H+FRP Y +L S LR ++ +T
Sbjct: 149 AEQFIEFLNIVKNKIGIAGFAIDEAHCVSEWGHDFRPEYRQL--SRLRQFYPDVPVIGLT 206
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATAT D++ L++ + + RDNL V +Q +YV+ + R
Sbjct: 207 ATATERVREDIIQQLDLQQPYVHVASFNRDNLYYEVV----PKQGTEQSYVNLLQQIKRM 262
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
+ +S K + I+ L ++ I+ YH+G+ AK+R Q + + ++V+VAT
Sbjct: 263 QGSGIVYCLSRKR--VNEIAERLREDGIAAIPYHAGLSAKEREENQTRWIRDDVQVMVAT 320
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539
+AFGMG++K DV VIHY LP+++E Y QE GRAGRDG S+C LFL Y L ++ Y
Sbjct: 321 IAFGMGINKPDVRFVIHYDLPKNIEGYYQESGRAGRDGEDSHCTLFLG---YQDLETIKY 377
>gi|427707114|ref|YP_007049491.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7107]
gi|427359619|gb|AFY42341.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7107]
Length = 718
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 204/356 (57%), Gaps = 40/356 (11%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL + L+ +GYD FR GQ + I+ L + ++V+PTG GKSLC+Q+PA++ GLT+VV
Sbjct: 6 NLEQALKYHFGYDQFRPGQRKIIEDALQNRDLLVVMPTGGGKSLCFQLPALVKKGLTVVV 65
Query: 248 CPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQ+ L I FL+SS P +V I G +++L+V+PER ++ F
Sbjct: 66 SPLIALMQDQVEALRNNNISATFLNSSLNPYQVRSREEAILNGKVRLLYVAPERLMSERF 125
Query: 307 LSIFTATSL---ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
L IS +DEAHCVSEW H+FRP Y +LR+ LR+R ++A+TATAT
Sbjct: 126 LPFLDLVHHQVGISTFAIDEAHCVSEWGHDFRPEYRQLRS--LRSRYPHVPMIALTATAT 183
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
E S++IQ+ L+ Q S+ ++ NRQN + +K+
Sbjct: 184 -----------ERVRSDIIQQIGLK---QPSIHIASFNRQNL-------YYEVRPKTKYA 222
Query: 424 Y------ILQISGKHF-------ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS 470
Y I +I G + D ++ L ++ +SV +YH+G+ ++RS+ Q F
Sbjct: 223 YAELLELIREIDGSAIIYCLTRKKVDELTFKLQNDKVSVLAYHAGLSDEERSKNQTRFIR 282
Query: 471 NKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+ RV+VAT+AFGMG++K DV VIH+ +P +LE Y QE GRAGRDG S C +F
Sbjct: 283 DDARVMVATIAFGMGINKPDVRLVIHFDIPRNLESYYQESGRAGRDGEPSRCTIFF 338
>gi|407718977|ref|YP_006796382.1| ATP-dependent DNA helicase RecQ [Leuconostoc carnosum JB16]
gi|407242733|gb|AFT82383.1| ATP-dependent DNA helicase RecQ [Leuconostoc carnosum JB16]
Length = 605
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 191/327 (58%), Gaps = 11/327 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GYD FR GQL+ I+ VL K T+ ++PTG GKS+ YQ+PA++ GLTLV+ PL+
Sbjct: 7 ILKEVFGYDDFRAGQLDIIEKVLAHKHTLAIMPTGGGKSITYQLPALMFEGLTLVISPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L + I FL+S+ +E A+ + I+ G K+L+VSPER F F
Sbjct: 67 SLMKDQVDGLNTMGIDATFLNSTLTGQEQAQRMSDIRAGLYKMLYVSPERLEIPSFFG-F 125
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
I LV +DEAH +S+W H+FRPSY+ + LL +L +TATAT +
Sbjct: 126 IQQLPIDLVAIDEAHVMSQWGHDFRPSYLNI-LPLLHEIPGSPAVLGLTATATERVRESL 184
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
L++ + + RDNL L + + R+ YV + + R + + +
Sbjct: 185 QQLLDVSDEDTVLTGFARDNLALKIMHYVDKRR-----YVQD---YLRENSEQSGIIYAA 236
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ D + +L + V YH+G+P +R +QE F + ++V+VAT AFGMG++K +
Sbjct: 237 TRKQVDELYEFLHKKGVKVGRYHAGLPEHERQAMQEAFLYDDVQVIVATNAFGMGINKPN 296
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517
V VIHYS+P ++E Y QEIGRAGRDG
Sbjct: 297 VRFVIHYSVPGNIEAYYQEIGRAGRDG 323
>gi|422316006|ref|ZP_16397414.1| ATP-dependent DNA helicase RecQ [Fusobacterium periodonticum D10]
gi|404591658|gb|EKA93735.1| ATP-dependent DNA helicase RecQ [Fusobacterium periodonticum D10]
Length = 606
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 195/333 (58%), Gaps = 11/333 (3%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
R+L+ YGYD+FR+GQ + I +L K++ + ++ TGAGKS+CYQ+PA++ GLT+V+ PL
Sbjct: 7 RILKEYYGYDNFREGQEKIIDAILQKRNVLGIMTTGAGKSICYQVPALVFNGLTIVISPL 66
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + I +L+S+ +E + + I+ G K+L++SPER N FL+
Sbjct: 67 ISLMKDQVDSLKLIGIDASYLNSTLTSDEYNKILFKIKKGQTKLLYISPERLENKAFLN- 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECI--LAMTATATTTTL 367
F T I++VVVDEAHCVS+W NFR SY+R+ A +R + I LA TATAT
Sbjct: 126 FIKTIKIAMVVVDEAHCVSQWGENFRKSYLRI-ADFIRYITDGVKIQTLAFTATATPKIK 184
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDE---VFSFHRSSKHYY 424
D++ L+I + RDN+ V +N ++ +D + + R K
Sbjct: 185 VDIIDKLKIEDPFVFVDNFNRDNIYFKVI---DNTGLDKDLDIDSKPFIIDYLRKHKGKS 241
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ D I YL SV YH G+ ++R + Q+LF + + ++VAT AFGM
Sbjct: 242 GIIYCSTRKNVDDIYSYLVSFDRSVTKYHGGMSKEEREKNQKLFLDDDVEIMVATNAFGM 301
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
G++K ++ VIH ++P LE Y QE GRAGRDG
Sbjct: 302 GINKSNIRYVIHANIPADLESYYQEAGRAGRDG 334
>gi|428302021|ref|YP_007140327.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 6303]
gi|428238565|gb|AFZ04355.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 6303]
Length = 724
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 137/343 (39%), Positives = 198/343 (57%), Gaps = 14/343 (4%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL L+ +GYD+FR GQ E I+ L K M+V+PTG GKSLC+Q+PA++ G+T+VV
Sbjct: 6 NLETTLKYYFGYDNFRLGQREIIEEALQNKDLMVVMPTGGGKSLCFQLPALMKKGVTIVV 65
Query: 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
PL+ALM DQ+ L I FL+SS +V + I G +K+++V+PER ++ F
Sbjct: 66 SPLIALMQDQVETLRKNGIAATFLNSSLNSYQVRSREQAILEGKVKLVYVAPERLVSERF 125
Query: 307 LSIFTATSL---ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
L + I+ +DEAHCVSEW H+FRP Y +L LR R + + A+TATAT
Sbjct: 126 LPFLDLVNHQVGIAGFAIDEAHCVSEWGHDFRPEYRQLIT--LRQRYSGIPLFALTATAT 183
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D++ L + ++ + R NL V R ++ Y EV R S+
Sbjct: 184 DRVRADIIEQLGLQEPSIHIASFNRQNLYYEV------RPKTKTVYA-EVLELIRESEAS 236
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I+ + + D ++ L + IS +YH+G+ ++R+ Q F + +RV+VATVAFG
Sbjct: 237 TIIYCLTRK-QVDELTFKLQHDKISALAYHAGLSDEERTNNQTRFIRDDVRVMVATVAFG 295
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
MG+DK DV VIHY+LP ++E Y QE GRAGRDG S C +F
Sbjct: 296 MGIDKPDVRLVIHYNLPRNIEGYYQESGRAGRDGEPSRCTMFF 338
>gi|167622376|ref|YP_001672670.1| ATP-dependent DNA helicase RecQ [Shewanella halifaxensis HAW-EB4]
gi|167352398|gb|ABZ75011.1| ATP-dependent DNA helicase RecQ [Shewanella halifaxensis HAW-EB4]
Length = 607
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 134/362 (37%), Positives = 212/362 (58%), Gaps = 14/362 (3%)
Query: 178 RAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA 237
+A D + D+ L L+ V+GY +FR+GQ E I+ + + ++++PTG GKSLCYQ+PA
Sbjct: 3 QAALDNSVDQ-LSSTLQSVFGYRTFREGQREVIEQICAGQDCLVIMPTGGGKSLCYQLPA 61
Query: 238 MILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFV 296
+I+PGLT+VV PL++LM DQ+ L + +L+SS EE + ++ ++ G +K+L+V
Sbjct: 62 LIMPGLTVVVSPLISLMKDQVDSLIQTGVSAAYLNSSLPREESLQVLQKMRYGELKLLYV 121
Query: 297 SPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECIL 356
SPER L A F+ + +SL +DEAHC+S+W H+FRP Y L LR + I+
Sbjct: 122 SPERLLQASFIDRLHELN-VSLFAIDEAHCISQWGHDFRPEYAAL--GRLRQQFPQVPIM 178
Query: 357 AMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF 416
A+TATA T D+ L I +L+ R N++ +V+ N N+ +VD
Sbjct: 179 ALTATADKATRADICERLTITPHSLLTSFD-RPNIRYTVA-EKLNAANQLRQFVDA---- 232
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
+ I+ S + D ++ L ++YH+G ++R+ +Q+ F +++ +V
Sbjct: 233 --QNGTSGIVYCSSRR-RVDEVAERLRLQGHQAEAYHAGKTQEERADVQDRFLKDQLDIV 289
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
VATVAFGMG++K +V V+HY +P+S+E Y QE GRAGRDG S + D R+R
Sbjct: 290 VATVAFGMGINKSNVRYVVHYDIPKSVEAYYQETGRAGRDGLDSEALMLFDPADIGRVRH 349
Query: 537 LM 538
L+
Sbjct: 350 LI 351
>gi|182624514|ref|ZP_02952297.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens D str.
JGS1721]
gi|177910322|gb|EDT72703.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens D str.
JGS1721]
Length = 724
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 197/338 (58%), Gaps = 15/338 (4%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ YGY FR GQ E I +++ + ++PTG GKS+CYQIPA+IL G+T+V+ PL+
Sbjct: 7 ILKSFYGYSEFRKGQEEIINEIINGNDVVAIMPTGGGKSICYQIPALILDGVTVVISPLI 66
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ + + I +++S+ EE+ + ++ G IK+L+V+PER + +FL++
Sbjct: 67 SLMKDQVDAINSMGIESAYINSTLSNEEINNIFQSVKDGHIKILYVAPERLESMEFLNLV 126
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTLR 368
+ IS V VDEAHCVS+W H+FR SY + +LLR R + A TATAT +
Sbjct: 127 SNID-ISQVAVDEAHCVSQWGHDFRSSYKFIGRFINLLRKR---PVVSAFTATATEEVRK 182
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D++ LE+ + RDNL++ + N ++ Y+ + + +K +
Sbjct: 183 DIVKLLELNNPKVFVSGFDRDNLKIIIEKGVN-----KAHYI---LDYLKENKDVSGIIY 234
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
E D + + I YH+G+ ++R + QE F +K+ V+VAT AFGMG+DK
Sbjct: 235 CATRKEVDSLCELINSRGIGCTKYHAGLSDEERKKNQEDFVFDKVSVMVATNAFGMGIDK 294
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ VIH ++P+++E Y QEIGRAGRDG S C L
Sbjct: 295 PNIRYVIHNNMPKNIEGYYQEIGRAGRDGEKSECILIF 332
>gi|239625286|ref|ZP_04668317.1| ATP-dependent DNA helicase RecQ [Clostridiales bacterium
1_7_47_FAA]
gi|239519516|gb|EEQ59382.1| ATP-dependent DNA helicase RecQ [Clostridiales bacterium 1_7_47FAA]
Length = 824
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 198/337 (58%), Gaps = 13/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYD+FRDGQ I +L+ + + V+PTGAGKSLCYQIPA+++ G+TLV+ PL+
Sbjct: 6 ILKQYFGYDTFRDGQDVLINSILEGRDVLGVMPTGAGKSLCYQIPALMMDGITLVISPLI 65
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI- 309
+LM DQ+ +L V I F++SS + + + L + G +++V+PER ++ DFL
Sbjct: 66 SLMKDQVSNLNQVGILAAFINSSLTASQYIKVLELARAGRYPIIYVAPERLMSEDFLRFA 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECIL-AMTATATTTTLR 368
IS+V VDEAHCVS+W +FRPSY+++ + +L V I+ A TATAT
Sbjct: 126 LDGRVKISMVAVDEAHCVSQWGQDFRPSYLKIVDFI--NQLPVRPIVSAFTATATAEVRD 183
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
D++ L + N++ R NL +V Q+ + Y V R I+
Sbjct: 184 DIIDILMLRNPNVMTTGFDRSNLYFAV-------QSPKDKYATLVNYLERHKGESGIIYC 236
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ ++ S+ L S+ YH+G+ +R R QE F ++ +++VAT AFGMG+DK
Sbjct: 237 LTRKVVEEVCSQ-LMREGFSMTRYHAGLSDSERKRNQEDFIYDRAQIMVATNAFGMGIDK 295
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+V V+HY++P+++E Y QE GRAGRDG S C L
Sbjct: 296 SNVRFVVHYNMPKNMESYYQEAGRAGRDGEPSECILL 332
>gi|259502427|ref|ZP_05745329.1| ATP-dependent helicase RecQ [Lactobacillus antri DSM 16041]
gi|259169570|gb|EEW54065.1| ATP-dependent helicase RecQ [Lactobacillus antri DSM 16041]
Length = 596
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 202/330 (61%), Gaps = 14/330 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +G+ +FR GQ E I V++ ++ + V+PTG GKSLCYQIPA++ PG+TLVV PL
Sbjct: 5 QVLKDNFGFKTFRSGQKEVISRVINGENVLAVMPTGGGKSLCYQIPALVKPGVTLVVSPL 64
Query: 251 VALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I ++S+ EV +R G IK+++V+PER LN ++
Sbjct: 65 ISLMKDQVDALRQNGIAAAAINSTIPQAEVNPILRQAYEGRIKLIYVTPER-LNMEYFRY 123
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL--LRARLNVECILAMTATATTTTL 367
+ LV +DEAHC+S+W H+FRP+Y +L+A++ LR+R N ILA+TATAT
Sbjct: 124 QLNFLPVDLVAIDEAHCISQWGHDFRPAYRQLKAAIDQLRSRPN---ILALTATATPAVQ 180
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ L I +N + + R N+ V N+ + Y+ E + H+ I+
Sbjct: 181 ADIGEQLAIEKANFVVTSFARPNISFQVVHPTNSSRR----YIREYLAKHQDEAG--IIY 234
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
++ + D ++ YL ++ +SV +YH+G+ R+R+Q+ F +++ +VAT AFGMG+D
Sbjct: 235 VNTRK-GVDQLTAYLLEHQLSVAAYHAGMDPASRARVQDDFQFDRVSTIVATSAFGMGID 293
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
K +V VIH + +++E Y QE GRAGRDG
Sbjct: 294 KSNVRFVIHATSAQNIESYYQEAGRAGRDG 323
>gi|300776233|ref|ZP_07086092.1| ATP-dependent helicase RecQ [Chryseobacterium gleum ATCC 35910]
gi|300505366|gb|EFK36505.1| ATP-dependent helicase RecQ [Chryseobacterium gleum ATCC 35910]
Length = 635
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 135/338 (39%), Positives = 200/338 (59%), Gaps = 16/338 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GY FRD Q E I V+++K T+++LPTGAGKSLCYQ+PA++ G LVV PL+A
Sbjct: 15 LKYFWGYTDFRDSQEEIINAVINEKDTLVLLPTGAGKSLCYQLPALLKEGTCLVVSPLLA 74
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIR-LIQVGAIKVLFVSPERFLNADFLSIF 310
LM DQ+ L I +L SS+ E AETI + G K+L+VSPER NA F+
Sbjct: 75 LMKDQVNQLKSRGIEAEYL-SSELDEYDAETIYGRCKEGLTKLLYVSPERLTNAQFIQNM 133
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
L S + VDEAHC+SEW +FRPSY ++ + C LA+TATAT L ++
Sbjct: 134 EEIQL-SFIAVDEAHCISEWGQDFRPSYQNIKG-FRSNNPEIPC-LALTATATPKVLEEI 190
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ LE+ + QK+ R+N+++ +E S VF + S I+ +
Sbjct: 191 KNKLELKNPFVFQKSFKRENIKIFT--------DEVSDKFQRVFDILKYSNDSGIVYVRT 242
Query: 431 KHFETDLISRYLCDNSI-SVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
+ E +L++ +L N + +V +H+G+ K+++ Q L+ ++ V+++T AFGMG+DK
Sbjct: 243 RK-EAELLAEFLKKNQLKNVDYFHAGLTTKEKNAKQNLWNNSDNNVLISTNAFGMGIDKD 301
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
+V VIHYS SLE Y QEIGRAGRDG+ S+ + +
Sbjct: 302 NVRFVIHYSPAASLENYYQEIGRAGRDGKDSFAFMLWN 339
>gi|126662148|ref|ZP_01733147.1| ATP-dependent DNA helicase recQ [Flavobacteria bacterium BAL38]
gi|126625527|gb|EAZ96216.1| ATP-dependent DNA helicase recQ [Flavobacteria bacterium BAL38]
Length = 731
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 200/341 (58%), Gaps = 18/341 (5%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
+L + L+ +G+ F+ Q + +K ++ +T +++PTG GKSLCYQ+PA++L G +VV
Sbjct: 7 DLHKELKKYFGFSQFKGLQEQVVKSIITGNNTFVIMPTGGGKSLCYQLPALVLDGTAIVV 66
Query: 248 CPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
PL+ALM +D +R L + H L+SS E+A + I G K+L+V+PE
Sbjct: 67 SPLIALMKNQVDAIRSLSSEYGIAH--VLNSSLNKTEIANVKKDITSGITKLLYVAPESL 124
Query: 302 LNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
+++ + IS V +DEAHC+SEW H+FRP Y LR +++R +V I +TAT
Sbjct: 125 TKEEYIEFLNSVP-ISFVAIDEAHCISEWGHDFRPEYRNLR-NIVRLLGDVPMI-GLTAT 181
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
AT D++ L++P +N + + R NL V N +++ ++ + H+ K
Sbjct: 182 ATPKVQEDILKNLDMPDANTFKASFNRPNLYYEVRTKTKNIESDIIRFIKQ----HKG-K 236
Query: 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
I +S K E I++ L N IS YH+G+ AK R++ Q++F + VVVAT+A
Sbjct: 237 SGVIYCLSRKKVEE--IAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVEVVVATIA 294
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
FGMG+DK DV VIH+ +P+SLE Y QE GRAGRDG +C
Sbjct: 295 FGMGIDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHC 335
>gi|424842508|ref|ZP_18267133.1| ATP-dependent DNA helicase RecQ [Saprospira grandis DSM 2844]
gi|395320706|gb|EJF53627.1| ATP-dependent DNA helicase RecQ [Saprospira grandis DSM 2844]
Length = 737
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 199/366 (54%), Gaps = 14/366 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D +L L+ +G++ F+ Q E I+ +L + T +++PTG GKSLCYQ+PA++ G +
Sbjct: 5 DRSLTTALKKYFGFEQFKGQQEEIIQSILGGQDTFVIMPTGGGKSLCYQLPALLSEGTAI 64
Query: 246 VVCPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
VV PL+ALM +D +R V H FL+SS +V E + I GA K+L+++PE
Sbjct: 65 VVSPLIALMKNQVDAVRSYAESDQVAH--FLNSSLSRAKVKEVKQDIVSGATKLLYIAPE 122
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
D L F + +S V VDEAHC+SEW H+FRP Y R+R+ + + I+A+T
Sbjct: 123 TLTKEDTLR-FLSQIKVSFVAVDEAHCISEWGHDFRPEYRRIRSMIENIEQEI-PIIALT 180
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATAT D++ L + + RDNL V G R F ++
Sbjct: 181 ATATPKVRMDIVKTLRLEAPREFMDSFNRDNLFYEVQPKGKKEDVLRRIVQ---FIKDKA 237
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
I+ + + T+ +++ L N I YH+G+ AK RS Q+ F K+ V+VAT
Sbjct: 238 PNESGIIYVQNRK-TTEEVAKVLSVNDIKAAPYHAGLEAKLRSDTQDAFLMEKVDVIVAT 296
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539
+AFGMG+DK DV VIHY +P+S+E Y QE GRAGRDG+ ++C F RL +
Sbjct: 297 IAFGMGIDKPDVRFVIHYDIPKSIENYYQETGRAGRDGQHAHCLTFYSYKDILRLEKFLR 356
Query: 540 SDGVDE 545
V E
Sbjct: 357 DKPVAE 362
>gi|408392086|gb|EKJ71448.1| hypothetical protein FPSE_08381 [Fusarium pseudograminearum CS3096]
Length = 739
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 148/487 (30%), Positives = 246/487 (50%), Gaps = 34/487 (6%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP--------- 241
R+L + Y SFR Q AI +L+ + ++V PTGAGKSLCYQIPA+ P
Sbjct: 78 RILADNFRYKSFRHEQEAAISRILNGDNALVVFPTGAGKSLCYQIPAIAFPEMDKVTKER 137
Query: 242 -----GLTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLF 295
G+T+VV PL+ALM DQ+ L I + S++ EE+ + + ++ G +++L+
Sbjct: 138 HADDSGITIVVSPLIALMKDQVDALKRKGIAAECMDSTKTWEEIQKINKDLREGKLRLLY 197
Query: 296 VSPERFLNADFLSIFT-ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC 354
+PER N F+ + + L+ VDEAHC+SEW H+FRP Y L+ + + E
Sbjct: 198 CAPERLNNEGFVGMMKYVKGGVRLIGVDEAHCISEWGHSFRPDY--LKVARFVKEIQAER 255
Query: 355 ILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVF 414
++ +TATAT + D+ A +I + + + R NL+L ++++ + E
Sbjct: 256 VICLTATATPPVIDDICKAFDISNDGVFKTSVYRPNLRLEAE--AVQAKDDKYGLLYEFL 313
Query: 415 SFHRSSKHYY-ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKI 473
H S Y LQ + ++++L +H+G+ +++ IQ+ F ++KI
Sbjct: 314 KTHPGSTLIYATLQKQAEE-----LAQHLTRKGFPAAHFHAGMKIEEKKAIQDDFMTSKI 368
Query: 474 RVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFR 533
+ VVAT+AFGMG+DK D+ +IH+ +P ++EEY Q++GRAGRDG+ SYC L+L ++
Sbjct: 369 QTVVATIAFGMGIDKPDIRNIIHWDVPSTVEEYCQQVGRAGRDGKQSYCMLYLCREDFWI 428
Query: 534 LRSLMYSDGVDEYAINKFLCQVFTNGMNS--HGKLCSLVKESASRKFDIKEEVMLTLLTC 591
+ D ++ L +F + + + G+ + S KFDI+ + +
Sbjct: 429 RENFARGDLPSRNSLRDLLKDIFDDDVVNLRQGETFKVSHYGQSTKFDIRISPLSVIYAA 488
Query: 592 LELGEIQYLQLLPELKVTCTLNFHKTT---PTLLADKDKMVATILKKSETKQGQYVFDIP 648
LEL PE + F T+ P L IL+ ++ + + D+
Sbjct: 489 LELKFNLIRATTPEY---SSYKFEATSSYYPRLKVINTPESKAILQHAKKAKKFHSIDLT 545
Query: 649 TVANSIG 655
VAN G
Sbjct: 546 QVANKEG 552
>gi|409350386|ref|ZP_11233521.1| ATP-dependent helicase RecQ [Lactobacillus equicursoris CIP 110162]
gi|407877465|emb|CCK85579.1| ATP-dependent helicase RecQ [Lactobacillus equicursoris CIP 110162]
Length = 589
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 196/330 (59%), Gaps = 14/330 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GYDSFR GQ E I+ V ++ + V+PTG GKSLCYQIPA+++PG T+V+ PL
Sbjct: 6 QVLKKYFGYDSFRPGQREIIEKVFKGENVLAVMPTGGGKSLCYQIPALMIPGTTVVISPL 65
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I L+SS E+V +R G IK+L+V+PER + D+
Sbjct: 66 ISLMKDQVDSLKEYGIPAAALNSSTPQEDVNPILRACYEGRIKLLYVTPER-MEMDYFRY 124
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRA--SLLRARLNVECILAMTATATTTTL 367
++LV +DEAHC+S+W H+FRP+Y +L+A S L NV LA+TATAT
Sbjct: 125 QLNFLEVNLVAIDEAHCISQWGHDFRPAYRQLKAGISALHTHPNV---LALTATATKAVR 181
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D+ L+IP +N + + R NL + N+ +N R AY+ H+
Sbjct: 182 EDIGQQLDIPETNFVITSFERKNLHFKLV---NSPKNTR-AYIVNYLQKHQGEAGIIYAN 237
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
K + ++ +L SV+ YH+G+ + R+ +Q+ F ++I ++VAT AFGMG+D
Sbjct: 238 TRKK---VEGLTEFLQKQGFSVEGYHAGMSNEARAAVQDDFLYDRIPLIVATNAFGMGID 294
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
K +V V+H + ++LE Y QE GRAGRDG
Sbjct: 295 KSNVRFVLHANSAKNLEAYYQEAGRAGRDG 324
>gi|260062261|ref|YP_003195341.1| ATP-dependent DNA helicase [Robiginitalea biformata HTCC2501]
gi|88783823|gb|EAR14994.1| putative ATP-dependent DNA helicase [Robiginitalea biformata
HTCC2501]
Length = 733
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 200/368 (54%), Gaps = 17/368 (4%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G+ F+ Q + IK ++ + T +++PTG GKSLCYQ+PA+I G +VV PL+A
Sbjct: 12 LKKYFGFSQFKGLQEDVIKNIVQGRDTFVIMPTGGGKSLCYQLPALIGEGTAIVVSPLIA 71
Query: 253 LM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306
LM +D +R + V H L+SS EV I G K+L+V+PE ++
Sbjct: 72 LMKNQVDAIRGVSDNDGVAH--VLNSSLTKGEVKAVKEDITSGVTKLLYVAPESLTKEEY 129
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
+ +L S V +DEAHC+SEW H+FRP Y LR+ + R ++ I+A+TATAT
Sbjct: 130 VDFLQGVTL-SFVAIDEAHCISEWGHDFRPEYRNLRSIIDRLGDDI-PIIALTATATPKV 187
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426
D++ L IP + + + + R NL V N + +V + + K I
Sbjct: 188 QEDILKNLGIPEAEVFKASFNRPNLYYEVQPKTKNVDADIIRFVKK-----NAGKSGIIY 242
Query: 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486
+S K E +++ L N +S YH+G AK RSR Q++F ++ VVVAT+AFGMG+
Sbjct: 243 CLSRKRVEE--LAQVLQVNGVSAVPYHAGFDAKTRSRYQDMFLMEEVDVVVATIAFGMGI 300
Query: 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY 546
DK DV VIH+ +P+S+E Y QE GRAGRDG +C F +L M V E
Sbjct: 301 DKPDVRYVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMAGKPVAEQ 360
Query: 547 AINKFLCQ 554
I L Q
Sbjct: 361 EIGNALLQ 368
>gi|116191391|ref|XP_001221508.1| hypothetical protein CHGG_05413 [Chaetomium globosum CBS 148.51]
gi|88181326|gb|EAQ88794.1| hypothetical protein CHGG_05413 [Chaetomium globosum CBS 148.51]
Length = 747
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 155/520 (29%), Positives = 257/520 (49%), Gaps = 33/520 (6%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP--------- 241
+LL +GY SFR Q AI +L + + V PTGAGKSLCYQIPA P
Sbjct: 86 KLLTETFGYSSFRHEQAGAIGRILAGGNVLTVFPTGAGKSLCYQIPATAFPQLDLQDASR 145
Query: 242 -----GLTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLF 295
G+T+VV PL+ALM DQ+ L + + S++ E++ +T ++ G +++L+
Sbjct: 146 TPGEHGITIVVSPLIALMKDQVDALKRKKVAADCIDSTKTWEQLQQTYAALREGKLRILY 205
Query: 296 VSPERFLNADFLSIFT-ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC 354
+PER N F+++ + L+ VDEAHC+SEW H+FRP Y L+ + + E
Sbjct: 206 CAPERLNNEGFVAMMRHVRGGVRLLAVDEAHCISEWGHSFRPEY--LKVARFADEIAAER 263
Query: 355 ILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVF 414
++ +TATAT + D+ SA +IP + + + R NL +L + + Y +F
Sbjct: 264 VICLTATATPKVVDDICSAFKIPTEGVFRTSAYRPNL----NLHARAVKTKHDKY-PLLF 318
Query: 415 SFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
F + ++ ++ + ++ L++ L ++ +++H+G+ ++S IQ+ F +N IR
Sbjct: 319 QFLNENPGPTLVYVTLQQ-QSVLLAADLREHGFDAEAFHAGMKVDEKSEIQDSFLANDIR 377
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL-DDITYFR 533
+VVAT+AFGMG+DK D+ V+H+ L ++EEY Q++GRAGRDG+ + C ++ D Y R
Sbjct: 378 IVVATIAFGMGIDKPDIRNVVHFDLSSTVEEYCQQVGRAGRDGKTANCMFYICPDDRYIR 437
Query: 534 LRSLMYSDGVDEYAINKFLCQVF-TNGMNSHGKLCSLVKESASRKFDIKEEVMLTLLTCL 592
+ D ++ L + N G + SR +DI+ ++ + L
Sbjct: 438 -ENFARGDLPSRKSLKGLLIDILGKNAAKPVGDTFKTSHYAQSRDYDIRMSPLVIIYAAL 496
Query: 593 ELGEIQYLQLLP---ELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPT 649
EL + P E K T + T D+ I + K + D+ T
Sbjct: 497 ELRFGLIRAVTPEYSEYKFVATPGYFTRMKT---DRSPASRAISTNAFKKAKFHHVDLTT 553
Query: 650 VANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVE 689
+ + G ID+ L L G I + Y IV+
Sbjct: 554 IMSRTGLPRIDLVRTLNELHETGLIELKAGGIEQKYRIVQ 593
>gi|440756898|ref|ZP_20936098.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
gi|440172927|gb|ELP52411.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
Length = 701
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 209/355 (58%), Gaps = 30/355 (8%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A+ ++L ++L+ +GYD FR Q + I+ L+ + ++++PTG GKSLC+Q+PA+I G+
Sbjct: 2 AAIDSLEKVLKHHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGV 61
Query: 244 TLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302
T+VV PL+ALM DQ+ L I FL+S+ ++V + LI G IK+L+V+PER L
Sbjct: 62 TVVVSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRDRESLILQGKIKLLYVAPERLL 121
Query: 303 NA---DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
+ DFL++ ++ + VDEAHCVS+W H+FRP Y +++ +R R ILA+T
Sbjct: 122 SPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQ--VRQRFPSVPILALT 179
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN-------ERSAYVDE 412
ATAT D+ IQ+ LRD S+ ++ NR N + S +
Sbjct: 180 ATATQQVREDI-----------IQQLGLRD---ASIHIASFNRPNLYYEVRAKTSKSYQQ 225
Query: 413 VFSFHRSSKHYYILQ-ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
++ + + K I+ IS K D ++ L + I+ YH+G+ ++RS Q F +
Sbjct: 226 LYQYIKGQKGSGIVYCISRK--TVDQVAEQLQKDGINALPYHAGMNDQERSENQTRFIRD 283
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++++VAT+AFGMG++K DV V+HY LP +LE Y QE GRAGRDG + C LF
Sbjct: 284 DVQIMVATIAFGMGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFF 338
>gi|379729697|ref|YP_005321893.1| ATP-dependent DNA helicase RecQ [Saprospira grandis str. Lewin]
gi|378575308|gb|AFC24309.1| ATP-dependent DNA helicase RecQ [Saprospira grandis str. Lewin]
Length = 737
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 199/366 (54%), Gaps = 14/366 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D +L L+ +G++ F+ Q E I+ +L + T +++PTG GKSLCYQ+PA++ G +
Sbjct: 5 DRSLTTALKKYFGFEQFKGQQEEIIQSILSGQDTFVIMPTGGGKSLCYQLPALLSEGTAI 64
Query: 246 VVCPLVALM---IDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
VV PL+ALM +D +R V H FL+SS +V E + I GA K+L+++PE
Sbjct: 65 VVSPLIALMKNQVDAVRSYAESDQVAH--FLNSSLSRAKVKEVKQDIVSGATKLLYIAPE 122
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359
D L F + +S V VDEAHC+SEW H+FRP Y R+R+ + + I+A+T
Sbjct: 123 TLTKEDTLR-FLSQIKVSFVAVDEAHCISEWGHDFRPEYRRIRSMIENIEQEI-PIIALT 180
Query: 360 ATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS 419
ATAT D++ L + + RDNL V G R F ++
Sbjct: 181 ATATPKVRMDIVKTLRLEEPREFMDSFNRDNLFYEVQPKGKKEDVLRRIVQ---FIKDKA 237
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
I+ + + T+ +++ L N I YH+G+ AK RS Q+ F K+ V+VAT
Sbjct: 238 PNESGIIYVQNRK-TTEEVAKVLSVNDIKAAPYHAGLEAKLRSDTQDAFLMEKVDVIVAT 296
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539
+AFGMG+DK DV VIHY +P+S+E Y QE GRAGRDG+ ++C F RL +
Sbjct: 297 IAFGMGIDKPDVRFVIHYDIPKSIENYYQETGRAGRDGQHAHCLTFYSYKDILRLEKFLR 356
Query: 540 SDGVDE 545
V E
Sbjct: 357 DKPVAE 362
>gi|440780974|ref|ZP_20959445.1| ATP-dependent DNA helicase [Clostridium pasteurianum DSM 525]
gi|440221562|gb|ELP60767.1| ATP-dependent DNA helicase [Clostridium pasteurianum DSM 525]
Length = 722
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 198/336 (58%), Gaps = 13/336 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ YGY FR Q + I +L KK T+ ++PTG GKS+CYQIPA++ G+T+V+ PL++
Sbjct: 9 LQKYYGYKEFRKSQSDIIDSILCKKDTLAIMPTGGGKSICYQIPALLFNGITIVISPLIS 68
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ ++ + I+ +++SS +E I + IK+L+++PER + DF ++
Sbjct: 69 LMKDQVDNIKDLGINAEYINSSLTVKETHSIIEKLNNNEIKILYLAPERLESIDFCNLIR 128
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ IS + VDEAHCVS+W H+FR SY R + +++ + A TATAT D++
Sbjct: 129 TLN-ISQIAVDEAHCVSQWGHDFRTSY-RYISKFIKSLSKPPVVTAFTATATREVQNDII 186
Query: 372 SALEIPLSNLIQKAQLRDNLQLSV-SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+E+ + R+NL+++V + G R YV + +K + +
Sbjct: 187 KLIELNNPEVFISGFDRENLKINVLKIPG------RLKYV---LDYVNKNKDQSGIIYAS 237
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
E D I L ++S+SV YH+G+ +R + QE F +++ V+VAT AFGMG+DK +
Sbjct: 238 TRKEVDNIYENLVESSVSVSKYHAGLSDAERKQNQEDFVYDRVGVMVATNAFGMGIDKSN 297
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V VIHY++P+++E Y QEIGRAGRDG S C L
Sbjct: 298 VRFVIHYNMPKNIESYYQEIGRAGRDGEKSECILLF 333
>gi|408792411|ref|ZP_11204021.1| ATP-dependent DNA helicase, RecQ family [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408463821|gb|EKJ87546.1| ATP-dependent DNA helicase, RecQ family [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 635
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 145/339 (42%), Positives = 191/339 (56%), Gaps = 9/339 (2%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG-LTLVVCPLV 251
L+ +G+ FR GQ AI+ VLD + T+ +LPTGAGKSL YQ+PA I LTLV+ PL+
Sbjct: 25 LKTKFGFSEFRPGQEGAIRSVLDGQDTLAILPTGAGKSLIYQLPAAIQKNKLTLVISPLI 84
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ L I F +S+Q E + G I+VL VSPER L+ FL IF
Sbjct: 85 ALMKDQTESLLAKGIPAAFCNSTQDEVEQMTILAKSVKGEIRVLLVSPERALSNGFLRIF 144
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC--ILAMTATATTTTLR 368
L +LVV DEAHCVS+W H+FRP Y ++ +LR R ILA+TATAT+
Sbjct: 145 RELDLFALVV-DEAHCVSQWGHDFRPEYRQIH--ILRERHPRPNFPILALTATATSKVQT 201
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNR-QNERSAYVDEVFSFHRSSKHYYILQ 427
DV +AL + ++ R NL+ SV R + +R + E + R I+
Sbjct: 202 DVQAALGMKSPKVVLSTFYRPNLKFSVEYPAAERDKADRLIELLEPWKDGRKFPGRAIIY 261
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + +TD + L D SV YH+G R R Q + S K+ ++VAT AFGMG+D
Sbjct: 262 CATRK-KTDEVYDLLKDFGFSVGKYHAGRTDGIRERTQNAYSSGKVPILVATNAFGMGMD 320
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
+ DV V+HY +P SLE Y QE GRAGRDG S C LF
Sbjct: 321 QPDVRLVVHYQVPASLEAYYQEAGRAGRDGLGSECVLFF 359
>gi|431793950|ref|YP_007220855.1| ATP-dependent DNA helicase, RecQ-like protein [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784176|gb|AGA69459.1| ATP-dependent DNA helicase, RecQ-like protein [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 748
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 136/342 (39%), Positives = 196/342 (57%), Gaps = 12/342 (3%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
D+ L L R +GY FR GQ + I+ +L+ K T+ ++PTGAGKSL YQIPA++ G+TL
Sbjct: 3 DQALAELKRY-FGYAQFRPGQQKVIQSLLEAKDTVAIMPTGAGKSLAYQIPALLFSGVTL 61
Query: 246 VVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304
V+ PL++LM DQ+ L + F++SS E I + G K+L+V+PER
Sbjct: 62 VISPLISLMKDQVDALDDAGVPATFINSSLSINEARTRINKARSGEYKLLYVAPERLETE 121
Query: 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364
FL + + S IS + VDEAHCVS+W H+FRPSY R + + + I A TATAT
Sbjct: 122 SFLVLLESLS-ISFIAVDEAHCVSQWGHDFRPSY-RGIGAFVESLPKRPLIGAFTATATQ 179
Query: 365 TTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY 424
D++ L++ N+ R NL + +L G N++ + Y E HR S Y
Sbjct: 180 EVKEDIVRLLKLRNPNVFVTGFDRPNLSFT-TLRGENKKVLLANYCLE---HHRESGIIY 235
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ E D + +L +SV YH+G+ +DR + QE F +K ++VAT AFGM
Sbjct: 236 ----AATRKEVDQLQTHLKGKGLSVGKYHAGMNDQDRQKSQEAFLYDKAPLMVATNAFGM 291
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
G+DK +V VIHY++P+++E Y QE GRAGRDG + C L
Sbjct: 292 GIDKSNVRFVIHYNMPKNMEAYYQEAGRAGRDGEPAACILLF 333
>gi|325110491|ref|YP_004271559.1| ATP-dependent DNA helicase RecQ [Planctomyces brasiliensis DSM
5305]
gi|324970759|gb|ADY61537.1| ATP-dependent DNA helicase RecQ [Planctomyces brasiliensis DSM
5305]
Length = 741
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 141/335 (42%), Positives = 192/335 (57%), Gaps = 12/335 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ +GYDSFR Q EAI+ VL ++ +++VLPTG GKSLCYQ+PA + GL +VV PL+
Sbjct: 26 VLKRYWGYDSFRPLQEEAIRAVLQRRDSVVVLPTGGGKSLCYQVPAALRDGLAVVVSPLI 85
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
ALM DQ+ L + I ++SS EE + R ++ G I +L+V+PER N L F
Sbjct: 86 ALMKDQVDALTDLGISAAAVNSSLPAEERRQIARRVEAGEISMLYVAPERLCNERMLD-F 144
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ +S + VDEAHC+S W H FRP Y RL SL NV+ I A TATAT D+
Sbjct: 145 LSRQQVSFIAVDEAHCISSWGHQFRPEY-RLLGSLRDRFPNVD-IHAYTATATAQVRDDI 202
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L++ L R NL V RQ+ + + + F S Y IS
Sbjct: 203 AAQLDLREPELHVGNFDRPNLTYRVV----PRQDSKKQIREVLDRFKGQSGIIYC--ISR 256
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
K + D ++ YL + +YH+G+ R Q+ F S ++ +VVATVAFGMG+DK +
Sbjct: 257 K--QVDELNEYLNQSGFRSAAYHAGLEHDQRQAAQDAFLSEQVDIVVATVAFGMGIDKPN 314
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V VIH S +SLE Y QE GRAGRDG + CHLF
Sbjct: 315 VRFVIHASSTKSLENYQQEAGRAGRDGLPAECHLF 349
>gi|411116551|ref|ZP_11389038.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
gi|410712654|gb|EKQ70155.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
Length = 741
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 191/335 (57%), Gaps = 10/335 (2%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GYDSFR GQ + I+ L + ++V+PTG GKSLCYQ+PA++ PGLT+VV PL+A
Sbjct: 18 LKHYFGYDSFRPGQRQIIEKALQNQDLLVVMPTGGGKSLCYQLPALLKPGLTVVVSPLIA 77
Query: 253 LMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ++ L I FL+SS E+ E R I G +K+++++PER LN L+ +
Sbjct: 78 LMQDQVQALQDNGIPATFLNSSLSGTELRERERAILDGEMKLVYIAPERLLNEGRLAGWL 137
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ++ + +DEAHCVSEW H+FRP Y +L S LR I+A+TATAT D++
Sbjct: 138 SQVYVAAIAIDEAHCVSEWGHDFRPEYRQL--SQLRQWFANVPIMALTATATERVRYDII 195
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L + L R NL V R + +Y E+ R +
Sbjct: 196 EQLNLQDPVLHVSTFNRPNLYYEV------RPKHKQSY-RELLQLIRQQAGASGIIYCLS 248
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
D ++ L + IS YH+G+ + RS Q F + ++V+VAT+AFGMG++K DV
Sbjct: 249 RKRVDELTTKLQRDGISALPYHAGMDNQLRSENQSRFIRDNVQVMVATIAFGMGINKPDV 308
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
V+HY LP ++E Y QE GRAGRDG + C LF
Sbjct: 309 RFVVHYDLPRNIEGYYQESGRAGRDGEPARCTLFF 343
>gi|169344035|ref|ZP_02865023.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens C str.
JGS1495]
gi|169297770|gb|EDS79867.1| ATP-dependent DNA helicase RecQ [Clostridium perfringens C str.
JGS1495]
Length = 724
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 197/339 (58%), Gaps = 15/339 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+L+ YGY FR GQ E I +++ + ++PTG GKS+CYQIPA+IL G+T+V+ PL
Sbjct: 6 EILKSFYGYSEFRKGQEEIINEIINGNDVVAIMPTGGGKSICYQIPALILEGVTVVISPL 65
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ + + I +++S+ EE+ + ++ G IK+L+V+PER + +FL++
Sbjct: 66 ISLMKDQVDAINSMGIESAYINSTLSNEEINNIFQSVKDGHIKILYVAPERLESMEFLNL 125
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNVECILAMTATATTTTL 367
+ IS V VDEAHCVS+W H+FR SY + +LLR R + A TATAT
Sbjct: 126 VSNID-ISQVAVDEAHCVSQWGHDFRSSYKFIGRFINLLRKR---PVVSAFTATATEEVR 181
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+D++ LE+ + RDNL++ + N ++ Y+ + + +K +
Sbjct: 182 KDIVKLLELNNPKVFVSGFDRDNLKIIIEKGVN-----KAHYI---LDYLKENKDVSGII 233
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
E D + + I YH+G+ ++R + QE F +K+ V+VAT AFGMG+D
Sbjct: 234 YCATRKEVDSLCELINSRGIGCTKYHAGLSDEERKKNQEDFVFDKVSVMVATNAFGMGID 293
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
K ++ VIH ++P+++E Y QEIGRAGRDG S C L
Sbjct: 294 KPNIRYVIHNNMPKNIEGYYQEIGRAGRDGEKSECILIF 332
>gi|452981597|gb|EME81357.1| hypothetical protein MYCFIDRAFT_38628 [Pseudocercospora fijiensis
CIRAD86]
Length = 709
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 167/535 (31%), Positives = 267/535 (49%), Gaps = 38/535 (7%)
Query: 164 RRTASELELVEEAVRAVR--DEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTML 221
R+ AS+ L ++ R EA+ ++LR +G SFR Q AI VLD S+++
Sbjct: 32 RKAASKTSLAPVKKQSTRPASEAAITIANKILRERFGIPSFRLKQEAAITRVLDGNSSVV 91
Query: 222 VLPTGAGKSLCYQIPAMILP---------------GLTLVVCPLVALMIDQLRHLP-PVI 265
V PTG GKSLCYQ+PA+ G+TLVV PL+ALM DQ+ L I
Sbjct: 92 VFPTGGGKSLCYQVPALCFKELDRMSGVRQGHAESGITLVVSPLLALMKDQVDALKRKGI 151
Query: 266 HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL-SIFTATSLISLVVVDEA 324
+ L S++ +E E + ++ G + +L+ +PER N F+ S+ + L+ VDEA
Sbjct: 152 NAASLDSTKSKQEYFEVVDAMRNGTLDILYCAPERLNNEGFVASMANVKGGVRLLAVDEA 211
Query: 325 HCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQK 384
HC+SEW H FRP Y+++ A R + E +L +TATAT +DV +A +I L +
Sbjct: 212 HCISEWGHAFRPDYLKV-ARFYR-EIRAERVLCLTATATPQVAQDVCNAFDISNDGLFRT 269
Query: 385 AQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCD 444
+ R NL+L + Q ++ +Y ++ F + I+ ++ + +L R L
Sbjct: 270 STYRPNLKLR----AESYQIKKDSY-PKLIRFLKGHPGPTIIYVTLQKHTEELADR-LRK 323
Query: 445 NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLE 504
+V+ +H+G+ +++ ++Q+ F +K ++ AT+AFGMG+DK D+ V+HY +P SLE
Sbjct: 324 ADFNVRHFHAGMKPEEKFKVQDDFMKSKDMIICATIAFGMGIDKSDIRNVVHYDIPRSLE 383
Query: 505 EYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFT-NGMNSH 563
Y QEIGRAGRDG S+C L+L S D + ++ + +VF N
Sbjct: 384 GYSQEIGRAGRDGLESHCMLYLCAEDLHLRESFARGDLPSKRSVQSLMKEVFALKASNDP 443
Query: 564 GKLCSLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLA 623
+ + +++ DIK + ++ LEL LL T +K
Sbjct: 444 LPVVEASLYAQAKEHDIKMTTLGSIYAQLEL----RFNLL--RATTPKYTQYKYLVLAFT 497
Query: 624 DKDKM-VATILKKSETKQGQYVF---DIPTVANSIGATTIDVSNQLLNLKMRGEI 674
D D+ A L+K K + F D+ A + G +D+ ++L RG I
Sbjct: 498 DGDRTPAANALRKEAVKTAKAKFTYVDVEAAARNSGLPRVDLVSKLNEWHDRGLI 552
>gi|153003768|ref|YP_001378093.1| ATP-dependent DNA helicase RecQ [Anaeromyxobacter sp. Fw109-5]
gi|152027341|gb|ABS25109.1| ATP-dependent DNA helicase, RecQ family [Anaeromyxobacter sp.
Fw109-5]
Length = 605
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 147/348 (42%), Positives = 206/348 (59%), Gaps = 14/348 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
+LLR V+G+ +FR GQ E + VL + + V+PTGAGKSL YQIPA IL G TLVV PL
Sbjct: 104 QLLREVFGHAAFRPGQEEIVTAVLAGRDCLGVMPTGAGKSLTYQIPARILGGTTLVVSPL 163
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
VALM DQ+ + V + FL+S+ PEE E +R ++ G +++L+ +PE L A S
Sbjct: 164 VALMKDQVDAMGRVGLRAAFLNSTLSPEERRERVRALRRGELELLYAAPE-GLEASVGSA 222
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
L SL+ VDEAHC+S W H+FRP+Y L + L+ R +LA+TATAT D
Sbjct: 223 LEGVRL-SLIAVDEAHCISHWGHDFRPAYRNL--AGLKERFGAR-VLALTATATPEVTHD 278
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ + L + +++ + LR NL L G + R A V V + R + + +S
Sbjct: 279 IAAQLGMERPLVVRGSFLRRNLSLHAVKKGEGLRT-RDALVRLVRA--RKGESGIVYALS 335
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
K E + L ++ + ++YH+G+ R+R+Q+ F S I VV ATVAFGMG+DK
Sbjct: 336 RKSVEE--TAALLREHGVRAEAYHAGLEPDVRARVQDAFQSGAIDVVAATVAFGMGIDKP 393
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL---DDITYFRL 534
D+ VIH LP S+E Y QEIGRAGRDG+ S C LF D +++ RL
Sbjct: 394 DIRFVIHRDLPRSIESYYQEIGRAGRDGKPSTCVLFYSWADVMSWERL 441
>gi|342882387|gb|EGU83075.1| hypothetical protein FOXB_06419 [Fusarium oxysporum Fo5176]
Length = 747
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 146/481 (30%), Positives = 244/481 (50%), Gaps = 45/481 (9%)
Query: 143 NKRKFANKGKRN---------KSFRGKLSYRRTASELELVE-EAVRAVRDEASDENLGRL 192
N K ++GK N K+ G LS + ++S L E + ++ R +L
Sbjct: 35 NPPKKHSRGKENDIQDIAPAKKARHGSLSLKESSSNGRLGETQRIQLAR---------KL 85
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP----------- 241
L +GY FR Q AI +LD + ++V PTGAGKSLCYQIPA+ P
Sbjct: 86 LADKFGYREFRHEQEAAIARLLDGDNALVVFPTGAGKSLCYQIPAIAFPEVDRQTKARQA 145
Query: 242 ---GLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVS 297
G+T+VV PL+ALM DQ+ L I + S++ +E+ + + ++ G +++L+ +
Sbjct: 146 NDSGITIVVSPLIALMKDQVDALKRRGIAAECMDSTKSWDEIQKINKDLREGQLRLLYCA 205
Query: 298 PERFLNADFLSIFT-ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECIL 356
PER N F+ + ++ VDEAHC+SEW H+FRP Y L+ + + E ++
Sbjct: 206 PERLNNEGFVETMKRVKGGVRMIGVDEAHCISEWGHSFRPDY--LKVARFVQEIKAERVI 263
Query: 357 AMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF 416
+TATAT ++D+ A +I + + + R N L + ++++ +
Sbjct: 264 CLTATATPPVVKDICQAFDISDKGVFRTSVYRPNPSLRLEAEAVKAKDDKYELLFNFLKT 323
Query: 417 HRSSKHYYI-LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
H S Y LQ + ++ +L + +H+G+ ++ IQ+ F S+KI+
Sbjct: 324 HPGSTLIYTTLQKQAEE-----LAAHLTKQGVPAAHFHAGMKLDEKRLIQDDFMSSKIQT 378
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLR 535
VVAT+AFGMG+DK D+ +IH+ +P ++EEY Q++GRAGRDG+ SYC L+L ++
Sbjct: 379 VVATIAFGMGIDKSDIRNIIHWDIPSTVEEYCQQVGRAGRDGKPSYCMLYLCREDFWIKE 438
Query: 536 SLMYSDGVDEYAINKFLCQVFTNGMNS--HGKLCSLVKESASRKFDIKEEVMLTLLTCLE 593
+ D ++ L ++F + G+ + S S +FDI+ + + LE
Sbjct: 439 NFARGDLPSRNSLRNLLKEIFDGDVVKLPPGETFKVSHYSQSSQFDIRMSPLTVIYAALE 498
Query: 594 L 594
L
Sbjct: 499 L 499
>gi|319651761|ref|ZP_08005887.1| ATP-dependent DNA helicase [Bacillus sp. 2_A_57_CT2]
gi|317396580|gb|EFV77292.1| ATP-dependent DNA helicase [Bacillus sp. 2_A_57_CT2]
Length = 713
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 195/335 (58%), Gaps = 11/335 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GY SFR GQ + I+ +L + +T+ +LPTG GKS+C+QIPA++LPG +V+ PL++
Sbjct: 9 LKKYFGYTSFRPGQQDIIQNILSQTNTLGILPTGGGKSICFQIPALVLPGTAIVISPLIS 68
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I F++S+ E + I+ G K+++V+PERF + FL +
Sbjct: 69 LMKDQVDALSLAGIPAAFINSTLSSAEYQHVMAGIRNGEYKLVYVAPERFGSMAFLELLN 128
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
S IS +V DEAHC+S+W H+FRPSY R L + I A+TATAT D+
Sbjct: 129 DIS-ISAIVFDEAHCISQWGHDFRPSY-RSVVEELNSLYQKPVIAALTATATRDVAEDIR 186
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
L I + R+NL V L G N+++ ++ + H++ I+ S +
Sbjct: 187 RLLNIGEEHTFITGFARENLSFHV-LKGVNKRD----FILQTIKKHKNEAG--IIYTSSR 239
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
ETD + ++L + S YH+G+ ++R Q F ++ +++AT AFGMG+DK +V
Sbjct: 240 K-ETDQLYQFLKSKNCSAAKYHAGLTEEERKEAQNSFVYDESDIMIATNAFGMGIDKSNV 298
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
VIHY+LP ++E Y QE GRAGRDG S C+L
Sbjct: 299 RFVIHYNLPRNIEAYYQEAGRAGRDGVDSTCYLLF 333
>gi|282600067|ref|ZP_05972875.2| ATP-dependent DNA helicase RecQ [Providencia rustigianii DSM 4541]
gi|282566927|gb|EFB72462.1| ATP-dependent DNA helicase RecQ [Providencia rustigianii DSM 4541]
Length = 603
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 202/353 (57%), Gaps = 30/353 (8%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L +GY SFR GQ I +LD + ++++PTG GKSLCYQ+PA++ PG+TLVV PL+
Sbjct: 11 VLNSTFGYQSFRPGQEAVIGGILDGRDCLVLMPTGGGKSLCYQVPALVKPGITLVVSPLI 70
Query: 252 ALMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
+LM DQ+ L +HG L+SSQ P E + + L G IK+L+V+PER L D+ S
Sbjct: 71 SLMKDQVDQLK--LHGVEAACLNSSQTPLEQRQIMELCAEGRIKLLYVAPERLLT-DYFS 127
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
++ I+L+ VDEAHC+S+W H+FRP Y R L R NV ++A+TATA T
Sbjct: 128 QQLSSWNITLLAVDEAHCISQWGHDFRPEY-RALGQLRRTLPNVP-VMALTATADEATRT 185
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV------DEVFSFHRSSKH 422
D++ LE L D L V +S +R N R V D+++ F + K
Sbjct: 186 DIIRLLE-----------LNDPL---VHVSSFDRPNIRYTLVEKYKPLDQLWFFIKGQKG 231
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
+ + + + L +SV +YH+G+ R +Q+ F + +++VVATVAF
Sbjct: 232 KSGIVYCNSRTKVEETAERLQKRGLSVAAYHAGLDNAQREWVQDAFQKDNLQIVVATVAF 291
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
GMG++K +V V H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 292 GMGINKSNVRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLR 344
>gi|418614137|ref|ZP_13177124.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU118]
gi|374821710|gb|EHR85762.1| ATP-dependent DNA helicase RecQ [Staphylococcus epidermidis VCU118]
Length = 592
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 192/333 (57%), Gaps = 11/333 (3%)
Query: 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256
+GY SFR GQ E I +L+ + T+ VLPTG GKS+C+Q+P ++ G T+V+ PL++LM D
Sbjct: 9 FGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICHQVPGLMQGGTTIVISPLISLMKD 68
Query: 257 QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315
Q+ L + I +L+SS ++ + I+ GAI+ L+V+PERF N FL++
Sbjct: 69 QVDQLQAMGIQAAYLNSSLTHKQQKKIEERIKRGAIQFLYVAPERFENTFFLNLLRKIK- 127
Query: 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375
I L+ DEAHC+S+W H+FRPSY + + N I+A+TATAT +D+MS L
Sbjct: 128 IPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQNF-TIVALTATATAEVQQDIMSKLS 186
Query: 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435
I +++++ + R NL V N +R +V + + H I+ S + +
Sbjct: 187 IGQNDVVKTSTKRRNLIFKV-----NPTYQRQKFVVDYVANHEGQAG--IIYCSTRK-QV 238
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
+ + L I YH+G+ K+R Q F +++ VV+AT AFGMG+DK +V VI
Sbjct: 239 EELHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVI 298
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
HY++P LE Y QE GRAGRDG S C L +
Sbjct: 299 HYNMPGDLESYYQEAGRAGRDGLKSECILLFSE 331
>gi|392396238|ref|YP_006432839.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
gi|390527316|gb|AFM03046.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
Length = 725
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 132/334 (39%), Positives = 200/334 (59%), Gaps = 12/334 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +GY +FR Q + I V K T++++PTG GKS+C+QIPA+ L G+ +V+ PL+A
Sbjct: 10 LQQYFGYSTFRPLQEDIISSVYAKNDTLVLMPTGGGKSICFQIPAITLDGICIVISPLIA 69
Query: 253 LMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311
LM DQ+ L I FL+SSQ E E ++ G IK+L+VSPE+ L F + F
Sbjct: 70 LMKDQVNALQTNGISAAFLNSSQDMAEQREIESEVKQGKIKLLYVSPEKLLTESF-TYFL 128
Query: 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371
+ ISL VDEAHC+S+W H+FRP Y +L++ L+ R ++A+TATA T RD++
Sbjct: 129 QSLSISLFAVDEAHCISQWGHDFRPEYTQLKS--LKDRFPFVPMIALTATADKITRRDII 186
Query: 372 SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431
S L + + R NL L+V L R + +Y+ R ++ I +S K
Sbjct: 187 SQLGLENPTEFVASFNRPNLSLNV-LPAYKRMDSIVSYI-----LRRPNESGIIYCLSRK 240
Query: 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491
+ T+ ++ L + YH+G+ A +RSR+Q+ F +++ ++ ATVAFGMG+DK +V
Sbjct: 241 N--TENVAARLQKAGMKADYYHAGLNAHERSRVQDDFITDRTPIICATVAFGMGIDKPNV 298
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
V+HY++P+++E Y QEIGRAGRDG LF
Sbjct: 299 RWVMHYNIPKNIEGYYQEIGRAGRDGLKGDTMLF 332
>gi|313885824|ref|ZP_07819567.1| ATP-dependent DNA helicase RecQ [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924728|gb|EFR35494.1| ATP-dependent DNA helicase RecQ [Porphyromonas asaccharolytica
PR426713P-I]
Length = 733
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 202/369 (54%), Gaps = 14/369 (3%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
NL LL ++G++ F+ Q E I+ +L+ T +++PTG+GKSLCYQ+PA+I+ G ++V
Sbjct: 4 NLTELLSKIFGFEEFKGNQKEIIQSLLEGHDTFVLMPTGSGKSLCYQLPALIMEGTAIIV 63
Query: 248 CPLVALMIDQLRHLPPVIHGG----FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
PL+ALM +Q+ L L+SS ++ + + G K+L+V+PE
Sbjct: 64 SPLIALMKNQVDALRETTGSNDIAHVLNSSLNKAQLDQVYHDVSSGDTKLLYVAPESLGK 123
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
A+ + F IS +DEAHC+SEW H+FRP Y ++R + + I+A+TATAT
Sbjct: 124 AENIEFFRQVK-ISFFAIDEAHCISEWGHDFRPEYRKIRPVV--DEIGRRPIIALTATAT 180
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHY 423
D+ L I + + + R NL SV G + N R F R +K
Sbjct: 181 PKVEHDIRKNLGILEGRIFKSSFNRPNLYYSVEKKGED-VNARIIR----FIRKRPNKSG 235
Query: 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
I +S + +S+ L N I YH+G+ AK+RS Q+ F S + RV+VAT+AFG
Sbjct: 236 IIYCMSREKVMN--LSKLLQMNGIKALPYHAGLDAKERSANQDAFLSEECRVIVATIAFG 293
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGV 543
MG+DK DV VIHY +P+SLE Y QE GRAGRDG YC F ++ +L + M +
Sbjct: 294 MGIDKPDVRYVIHYDMPKSLEGYYQETGRAGRDGGEGYCLAFYNEKDIQKLENFMQGKPI 353
Query: 544 DEYAINKFL 552
E I + L
Sbjct: 354 AEQEIGRQL 362
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,035,566,733
Number of Sequences: 23463169
Number of extensions: 487875360
Number of successful extensions: 1474590
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 27529
Number of HSP's successfully gapped in prelim test: 3190
Number of HSP's that attempted gapping in prelim test: 1403488
Number of HSP's gapped (non-prelim): 49416
length of query: 815
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 664
effective length of database: 8,816,256,848
effective search space: 5853994547072
effective search space used: 5853994547072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)