BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036378
(815 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 196 bits (498), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 190/347 (54%), Gaps = 16/347 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GY FR GQ E I VL + ++V+PTG GKSLCYQIPA++L GLT+VV PL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + L+S+Q E+ E + + G I++L+++PER + +FL
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH 134
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
+ + L+ VDEAHC+S+W H+FRP Y +A+ +D
Sbjct: 135 LAHWNPV-LLAVDEAHCISQWGHDFRPEY--AALGQLRQRFPTLPFMALTATADDTTRQD 191
Query: 370 VMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
++ L + LIQ + R N++ + E+ +D++ + + + +
Sbjct: 192 IVRLLGLN-DPLIQISSFDRPNIRYMLM--------EKFKPLDQLMRYVQEQRGKSGIIY 242
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + + L IS +YH+G+ R+ +QE F + +++VVATVAFGMG++K
Sbjct: 243 CNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 183/347 (52%), Gaps = 16/347 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GY FR GQ E I VL + ++V PTG GKSLCYQIPA++L GLT+VV PL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++L DQ+ L + L+S+Q E+ E + G I++L+++PER +FL
Sbjct: 75 ISLXKDQVDQLQANGVAAACLNSTQTREQQLEVXTGCRTGQIRLLYIAPERLXLDNFLEH 134
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXXXXXXLRD 369
+ + L+ VDEAHC+S+W H+FRP Y A+ +D
Sbjct: 135 LAHWNPV-LLAVDEAHCISQWGHDFRPEYAALGQLRQRFP--TLPFXALTATADDTTRQD 191
Query: 370 VMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
++ L + LIQ + R N++ + E+ +D++ + + + +
Sbjct: 192 IVRLLGLN-DPLIQISSFDRPNIRYXLX--------EKFKPLDQLXRYVQEQRGKSGIIY 242
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + + L IS +YH+G+ R+ +QE F + +++VVATVAFG G++K
Sbjct: 243 CNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGXGINK 302
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + LF D D + R
Sbjct: 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAXLFYDPADXAWLR 349
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 120/377 (31%), Positives = 190/377 (50%), Gaps = 24/377 (6%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+ + FR QLE I + + K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 35 ILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 94
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPERFLNAD- 305
+LM DQL L + I L++S E V AE + + +K+++V+PE+ +
Sbjct: 95 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVN--KNSELKLIYVTPEKIAKSKM 152
Query: 306 FLSIFT---ATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVECILAMXXXX 362
F+S + + VDE HC S+W H+FRP Y ++ +
Sbjct: 153 FMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPN--ASLIGLTATA 210
Query: 363 XXXXLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF---HRS 419
L D L I + R NL V +N ++ +++++
Sbjct: 211 TNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTED----FIEDIVKLINGRYK 266
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
+ I S K E +S L + I +YH+ + +D++ + + +N+I+VVVAT
Sbjct: 267 GQSGIIYCFSQKDSEQVTVS--LQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 324
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539
VAFGMG+DK DV VIH+S+ +S+E Y QE GRAGRD + C L+ FR+ S++
Sbjct: 325 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVV 384
Query: 540 SDGVDEYAINKFL--CQ 554
+ V + + + + CQ
Sbjct: 385 MENVGQQKLYEMVSYCQ 401
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 252 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 311
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 312 IINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQIDEMPMN 369
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 252 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 311
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 312 IINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQIDEMPMN 369
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 288 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 348 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 289 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 348
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 406
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 289 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 348
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 349 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 406
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + + + +V S H +P K+R I + F S RV+++T + GLD V
Sbjct: 267 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 326
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
+I+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 327 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 384
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%)
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
+K +Y L +T ++ L D + H + R ++ LF KIR+++AT
Sbjct: 236 NKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT 295
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
G+D D+ VI+Y LP++ E Y IGR GR G+ ++ Y +LR +
Sbjct: 296 DVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINRREYKKLRYI 353
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+L + K + D I YL + + H G ++R++ E F K V+VAT
Sbjct: 57 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 116
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFRLRSLM 538
GLD + VI+Y +PE +E YV IGR G G F+ D+ L++L+
Sbjct: 117 GLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALL 174
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D + +L + S H +DR F S K ++VAT GLD +V VI
Sbjct: 60 DSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 119
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
++ LP +EEYV IGR GR G L F ++
Sbjct: 120 NFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 152
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%)
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
D + +L + S H +DR F S K ++VAT GLD +V V
Sbjct: 289 ADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHV 348
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
I++ LP +EEYV IGR GR G L F ++
Sbjct: 349 INFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 382
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 140/348 (40%), Gaps = 59/348 (16%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQ 257
G+ +F + Q + I ++L K+ ++ TG+GK+ Y IP + L +LVV P L
Sbjct: 13 GFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQV 72
Query: 258 LRHLPPV----------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
H+ + ++GG +Q + +V ++ +P R L+
Sbjct: 73 ASHIRDIGRYMDTKVAEVYGGMPYKAQ----------INRVRNADIVVATPGRLLDLWSK 122
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMXXXXXXXXXXXNVEC---ILAMXXXXXX 364
+ +S +V++DEA + F ++ N + A
Sbjct: 123 GVIDLSSF-EIVIIDEADLM------FEMGFIDDIKIILAQTSNRKITGLFSATIPEEIR 175
Query: 365 XXLRDVMSALE-----IPLSNLIQK-AQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR 418
++D ++ E I L+N+ K ++D+ + V R+N+ + V + +R
Sbjct: 176 KVVKDFITNYEEIEACIGLANVEHKFVHVKDDWRSKVQAL---RENKDKGVIVFVRTRNR 232
Query: 419 SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
+K L+ L DN+I ++ +P R+R + F + +++
Sbjct: 233 VAK---------------LVR--LFDNAIELRG---DLPQSVRNRNIDAFREGEYDMLIT 272
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
T GLD V VI++ P+ L Y+ IGR GR GR F+
Sbjct: 273 TDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 438 ISRYLCDNSISVKSYHSGIPAKDR-SRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH 496
+++ L + + + H G+P ++R SR Q+ F + R++VAT FG G+D V +
Sbjct: 265 LAQLLVEQNFPAIAIHRGMPQEERLSRYQQ-FKDFQRRILVATNLFGRGMDIERVNIAFN 323
Query: 497 YSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
Y +PE + Y+ + RAGR G F+ D
Sbjct: 324 YDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 355
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 438 ISRYLCDNSISVKSYHSGIPAKDR-SRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH 496
+++ L + + + H G+P ++R SR Q+ F + R++VAT FG G+D V +
Sbjct: 266 LAQLLVEQNFPAIAIHRGMPQEERLSRYQQ-FKDFQRRILVATNLFGRGMDIERVNIAFN 324
Query: 497 YSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
Y +PE + Y+ + RAGR G F+ D
Sbjct: 325 YDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 356
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 438 ISRYLCDNSISVKSYHSGIPAKDR-SRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH 496
+++ L + + + H G+P ++R SR Q+ F + R++VAT FG G+D V +
Sbjct: 266 LAQLLVEQNFPAIAIHRGMPQEERLSRYQQ-FKDFQRRILVATNLFGRGMDIERVNIAFN 324
Query: 497 YSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
Y +PE + Y+ + RAGR G F+ D
Sbjct: 325 YDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 356
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 438 ISRYLCDNSISVKSYHSGIPAKDR-SRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH 496
+++ L + + + H G+P ++R SR Q+ F + R++VAT FG G+D V +
Sbjct: 47 LAQLLVEQNFPAIAIHRGMPQEERLSRYQQ-FKDFQRRILVATNLFGRGMDIERVNIAFN 105
Query: 497 YSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
Y +PE + Y+ + RAGR G F+ D
Sbjct: 106 YDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 137
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495
D ++ +L + S H R + F + ++V++AT GLD +++ VI
Sbjct: 314 DFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVI 373
Query: 496 HYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
+Y +P +++YV IGR GR G F D
Sbjct: 374 NYDMPSKIDDYVHRIGRTGRVGNNGRATSFFD 405
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 390 NLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHF------ETDLISRYLC 443
NL ++L G + A+V+E H + + LQI+ +L+++ +
Sbjct: 223 NLMEELTLKG---ITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKIT 279
Query: 444 DNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESL 503
D S H+ + ++R+++ F K+R +V + G+D + V VI++ P++
Sbjct: 280 DLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTA 339
Query: 504 EEYVQEIGRAGRDGRLS 520
E Y+ IGR+GR G L
Sbjct: 340 ETYLHRIGRSGRFGHLG 356
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 441 YLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP 500
Y CD H G+ +DR + F + R +VAT G+D ++ VI+Y LP
Sbjct: 60 YPCD------KIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLP 113
Query: 501 ESLEEYVQEIGRAGRDG 517
E YV GR GR G
Sbjct: 114 LEKESYVHRTGRTGRAG 130
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494
+L+++ + S H+ + + R+R+ F + R +V T F G+D + V V
Sbjct: 57 VELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVV 116
Query: 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITY---FRLRSLMYSDGVD 544
I++ P+ E Y+ IGR+GR G L L ++ ITY F L+S+ G +
Sbjct: 117 INFDFPKLAETYLHRIGRSGRFGHLG---LAINLITYDDRFNLKSIEEQLGTE 166
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
ET+ I++ L ++ H + +R R+ F ++RV+VAT GLD V
Sbjct: 40 ETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDL 99
Query: 494 VIHYSLPESLEEY 506
V+HY +P+ E Y
Sbjct: 100 VVHYRMPDRAEAY 112
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
ET+ I++ L ++ H + +R R+ F ++RV+VAT GLD V
Sbjct: 43 ETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDL 102
Query: 494 VIHYSLPESLEEY 506
V+HY LP+ E Y
Sbjct: 103 VVHYRLPDRAEAY 115
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 449 VKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ES 502
V H + ++R R+ + F + +V++ T G+D V V++Y LP
Sbjct: 270 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQAD 329
Query: 503 LEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
Y+ IGR GR GR F+ D F + S
Sbjct: 330 PATYIHRIGRTGRFGRKGVAISFVHDKNSFNILS 363
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 449 VKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ES 502
V H + ++R R+ + F + +V++ T G+D V V++Y LP
Sbjct: 270 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQAD 329
Query: 503 LEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
Y+ IGR GR GR F+ D F + S
Sbjct: 330 PATYIHRIGRTGRFGRKGVAISFVHDKNSFNILS 363
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 442 LCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPE 501
L ++ +V + +S +P ++R I + F S R++++T G+D + V VI+Y LP
Sbjct: 280 LRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA 339
Query: 502 SLEEYVQE 509
+ E Y+
Sbjct: 340 NKENYIHR 347
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 442 LCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPE 501
L ++ +V + +S +P ++R I + F S R++++T G+D + V VI+Y LP
Sbjct: 279 LRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA 338
Query: 502 SLEEYVQE 509
+ E Y+
Sbjct: 339 NKENYIHR 346
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 442 LCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPE 501
L ++ +V + +S +P ++R I + F S R++++T G+D + V VI+Y LP
Sbjct: 50 LRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA 109
Query: 502 SLEEYVQE 509
+ E Y+
Sbjct: 110 NKENYIHR 117
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 449 VKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ES 502
V H + ++R R+ + F + +V++ T G+D V V++Y LP
Sbjct: 63 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQAD 122
Query: 503 LEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
Y+ IGR GR GR F+ D F + S
Sbjct: 123 PATYIHRIGRTGRFGRKGVAISFVHDKNSFNILS 156
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 449 VKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ES 502
V H + ++R R+ + F + +V++ T G+D V V++Y LP
Sbjct: 64 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQAD 123
Query: 503 LEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
Y+ IGR GR GR F+ D F + S
Sbjct: 124 PATYIHRIGRTGRFGRKGVAISFVHDKNSFNILS 157
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 453 HSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ESLEEY 506
H + ++R R+ + F + +V++ T G+D V V++Y LP Y
Sbjct: 66 HGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATY 125
Query: 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
+ IGR GR GR F+ D F + S
Sbjct: 126 IHRIGRTGRFGRKGVAISFVHDKNSFNILS 155
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +V + H + K+R I F S RV++ T G+D + V
Sbjct: 292 KVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 351
Query: 494 VIHYSLPESLEEYVQE 509
VI+Y LP + E Y+
Sbjct: 352 VINYDLPTNRENYIHR 367
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIG 511
+H I R+ + + F ++ ++V T G+D +V V+ +P L Y+ IG
Sbjct: 321 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 380
Query: 512 RAGRDGRLSYCHLFL--DDITYFR 533
R R G+ LF+ D++ + R
Sbjct: 381 RTARSGKEGSSVLFICKDELPFVR 404
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +V + H + K+R I F S RV++ T G+D + V
Sbjct: 266 KVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 325
Query: 494 VIHYSLPESLEEYVQE 509
VI+Y LP + E Y+
Sbjct: 326 VINYDLPTNRENYIHR 341
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIG 511
+H I R+ + + F ++ ++V T G+D +V V+ +P L Y+ IG
Sbjct: 321 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 380
Query: 512 RAGRDGRLSYCHLFL--DDITYFR 533
R R G+ LF+ D++ + R
Sbjct: 381 RTARSGKEGSSVLFICKDELPFVR 404
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIG 511
+H I R+ + + F ++ ++V T G+D +V V+ +P L Y+ IG
Sbjct: 372 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 431
Query: 512 RAGRDGRLSYCHLFL--DDITYFR 533
R R G+ LF+ D++ + R
Sbjct: 432 RTARSGKEGSSVLFICKDELPFVR 455
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIG 511
+H I R+ + + F ++ ++V T G+D +V V+ +P L Y+ IG
Sbjct: 66 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 125
Query: 512 RAGRDGRLSYCHLFL--DDITYFR 533
R R G+ LF+ D++ + R
Sbjct: 126 RTARSGKEGSSVLFICKDELPFVR 149
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIG 511
+H I R+ + + F ++ ++V T G+D +V V+ +P L Y+ IG
Sbjct: 66 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 125
Query: 512 RAGRDGRLSYCHLFL--DDITYFR 533
R R G+ LF+ D++ + R
Sbjct: 126 RTARSGKEGSSVLFICKDELPFVR 149
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIG 511
+H I R+ + + F ++ ++V T G+D +V V+ +P L Y+ IG
Sbjct: 66 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 125
Query: 512 RAGRDGRLSYCHLFL--DDITYFR 533
R R G+ LF+ D++ + R
Sbjct: 126 RTARSGKEGSSVLFICKDELPFVR 149
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
++ V+VAT G+D DV V ++ +P S + Y+ IGR R GR
Sbjct: 80 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGR 126
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 438 ISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHY 497
I+R + + +V + R I + F +V+V T G+D V V++Y
Sbjct: 373 IARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNY 432
Query: 498 SLP------ESLEEYVQEIGRAGRDGRLSYCHLFLDD 528
+P + Y+ IGR GR GR+ F+ D
Sbjct: 433 DMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHD 469
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 459 KDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ESLEEYVQEIGR 512
+ R+ + E F K +V+V T G+D V VI++ LP E Y+ IGR
Sbjct: 370 EQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGR 429
Query: 513 AGRDGR 518
GR G+
Sbjct: 430 TGRFGK 435
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 459 KDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ESLEEYVQEIGR 512
+ R+ + E F K +V+V T G+D V VI++ LP E Y+ IGR
Sbjct: 303 EQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGR 362
Query: 513 AGRDGR 518
GR G+
Sbjct: 363 TGRFGK 368
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 446 SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA--TVAFGMGLDKRDVGAVIHYSLPESL 503
S V +H+G+ R I+E F KI+V+VA T+A G+ L R V Y + +
Sbjct: 312 SKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKI 371
Query: 504 EEYVQEI---------GRAGRDG 517
Y EI GRAGR G
Sbjct: 372 AGYYDEIPIMEYKQMSGRAGRPG 394
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 459 KDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ESLEEYVQEIGR 512
+ R+ + E F K +V+V T G+D V VI++ LP E Y+ IGR
Sbjct: 319 EQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGR 378
Query: 513 AGRDGR 518
GR G+
Sbjct: 379 TGRFGK 384
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 459 KDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ESLEEYVQEIGR 512
+ R+ + E F K +V+V T G+D V VI++ LP E Y+ IGR
Sbjct: 340 EQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGR 399
Query: 513 AGRDGR 518
GR G+
Sbjct: 400 TGRFGK 405
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 30/132 (22%)
Query: 220 MLVLPTGAGKSLCYQIPAMILP--------GLTLVVCPLVALMID------QLRHLPP-- 263
++VLPTG GK+L AM++ G L++ P L++ +L +LPP
Sbjct: 27 LIVLPTGLGKTLI----AMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82
Query: 264 VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDE 323
++ L+ + PEE ++ KV+ +P+ N D L+ + +SL+V DE
Sbjct: 83 IVA---LTGEKSPEERSKAW-----ARAKVIVATPQTIEN-DLLAGRISLEDVSLIVFDE 133
Query: 324 AH-CVSEWSHNF 334
AH V +++ F
Sbjct: 134 AHRAVGNYAYVF 145
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%)
Query: 450 KSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQE 509
K G+ +++ I + F + V+VAT GLD +V V+ Y S +Q
Sbjct: 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQR 456
Query: 510 IGRAGR 515
GR GR
Sbjct: 457 RGRTGR 462
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVAL 253
Q EA++ V K+ +L +PT AGK+L ++ + I G +L V PL AL
Sbjct: 30 QAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRAL 80
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVA--TVAFGMGLDKRDVGAVIH-------YSLPES 502
+H+G+ R +++ F I+VVVA T+A G+ L R V ++ YS
Sbjct: 302 HHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRV--IVRSLYRFDGYSKRIK 359
Query: 503 LEEYVQEIGRAGRDG 517
+ EY Q GRAGR G
Sbjct: 360 VSEYKQMAGRAGRPG 374
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 456 IPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ESLEEYVQE 509
+ + R+ I + F K +V++ T G+D + V V+++ LP E Y+
Sbjct: 68 LTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHR 127
Query: 510 IGRAGRDGR--LSYCHLFLDDI 529
IGR GR G+ L++ + +D++
Sbjct: 128 IGRTGRFGKKGLAFNMIEVDEL 149
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVAL 253
S RD Q +A++ L K +VLPTG+GK+ L TL+V P +AL
Sbjct: 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLAL 145
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 459 KDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGR 512
++R I E F + + R +V++ G+D D + S S EY+Q +GR
Sbjct: 381 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR 434
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 453 HSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPE--SLEEYVQEI 510
H + +++ R+ F + ++V+T +G+D ++ + PE L + Q
Sbjct: 620 HGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIEN-PERFGLAQLHQLR 678
Query: 511 GRAGRDGRLSYCHLFLDDI 529
GR GR G+ +YC L + D+
Sbjct: 679 GRVGRGGQEAYCFLVVGDV 697
>pdb|2FZ4|A Chain A, Crystal Structure Of The N-Terminal Half Of Archaeoglobus
Fulgidus Xpb
Length = 237
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVAL 253
S RD Q +A++ L K +VLPTG+GK+ L TL+V P +AL
Sbjct: 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLAL 145
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 437 LISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD--------- 487
L +R L + I+V +H G+ + I+ LF I+V+ AT F MGL+
Sbjct: 392 LKTRSLLERGIAV--HHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFS 449
Query: 488 --KRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517
++ G + P E+ Q GRAGR G
Sbjct: 450 SIRKHDGNGLRELTP---GEFTQMAGRAGRRG 478
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 14/76 (18%)
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVV--ATVAFGMGLDKRDV---GAVIHYSLPESLE-- 504
+H+G+ DR+ +++LF I+V+V AT+A+G+ L V G + YS PE
Sbjct: 384 HHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV-YS-PEKGRWT 441
Query: 505 -----EYVQEIGRAGR 515
+ +Q +GRAGR
Sbjct: 442 ELGALDILQMLGRAGR 457
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 453 HSGIPAKDRSRIQELFCSNKIRVVVA--TVAFGMG--------LDKRDVGAVIHYSLPES 502
H G+ +R +++LF S I+VVVA ++ +GM +D + IH +
Sbjct: 1220 HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP 1279
Query: 503 LEEYVQEIGRAGR 515
+ + +Q +G A R
Sbjct: 1280 IYDVLQMVGHANR 1292
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 14/76 (18%)
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVV--ATVAFGMGLDKRDV---GAVIHYSLPESLE-- 504
+H+G+ DR+ +++LF I+V+V AT+A+G+ L V G + YS PE
Sbjct: 384 HHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV-YS-PEKGRWT 441
Query: 505 -----EYVQEIGRAGR 515
+ +Q +GRAGR
Sbjct: 442 ELGALDILQMLGRAGR 457
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 453 HSGIPAKDRSRIQELFCSNKIRVVVA--TVAFGMG--------LDKRDVGAVIHYSLPES 502
H G+ +R +++LF S I+VVVA ++ +GM +D + IH +
Sbjct: 1220 HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP 1279
Query: 503 LEEYVQEIGRAGR 515
+ + +Q +G A R
Sbjct: 1280 IYDVLQMVGHANR 1292
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 198 GYDSFRDGQLEAIKM-VLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT-----LVVCPLV 251
G +SF Q EA+K +L+ K+ ++ +PT +GK+L +I AM+ LT + + PL
Sbjct: 20 GIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEI-AMVHRILTQGGKAVYIVPLK 78
Query: 252 ALMIDQLRHL 261
AL ++ +
Sbjct: 79 ALAEEKFQEF 88
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP-LVALMIDQLRHLPPV 264
Q++AI ++L + + PTG+GK+L + IP IL L AL+I R L
Sbjct: 56 QMQAIPVMLHGRELLASAPTGSGKTLAFSIP--ILMQLKQPANKGFRALIISPTRELASQ 113
Query: 265 IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVD 322
IH + S E I +I A+ P+ D L + T LI L+ D
Sbjct: 114 IHRELIKIS---EGTGFRIHMIHKAAVAAKKFGPKSSKKFDIL-VTTPNRLIYLLKQD 167
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 459 KDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
++R I E F + + R +V++ G+D D + S S EY+Q +GR R +
Sbjct: 146 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 205
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 438 ISRYLCDNS----ISVKSYH----------SGIPAKDRSRIQELFCSNKIRVVVATVAFG 483
+S+++ +N + VK++H + ++ + F + KI +++AT
Sbjct: 416 LSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAE 475
Query: 484 MGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD 516
GLD ++ VI Y L + VQ GRA D
Sbjct: 476 EGLDIKECNIVIRYGLVTNEIAMVQARGRARAD 508
>pdb|3QS9|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 527
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 570 VKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMV 629
V E+A+ + D+ + L +L G I L + + C +F L ++ +
Sbjct: 52 VYEAAAVEVDVSASITLQVLVDAP-GNISCLWVFKHSSLNCQPHFD------LQNRGVVS 104
Query: 630 ATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVE 689
ILK +ET+ G+Y+ I + A + TI L + +R + Y L+ P Y +
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNY---TI-----LFTVSIRNTLLYTLRRP-YFRKMEN 155
Query: 690 VPSDFC---ALSAHLTKWL---SEVENCK------VRKLDRMFHAAVFAVDV 729
+ C ++ + +W+ S+ E+CK V+K +++ H +F D+
Sbjct: 156 QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH-ELFGTDI 206
>pdb|3QS7|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 423
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 570 VKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMV 629
V E+A+ + D+ + L +L G I L + + C +F L ++ +
Sbjct: 52 VYEAAAVEVDVSASITLQVLVDAP-GNISCLWVFKHSSLNCQPHFD------LQNRGVVS 104
Query: 630 ATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVE 689
ILK +ET+ G+Y+ I + A + TI L + +R + Y L+ P Y +
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNY---TI-----LFTVSIRNTLLYTLRRP-YFRKMEN 155
Query: 690 VPSDFC---ALSAHLTKWL---SEVENCK------VRKLDRMFHAAVFAVDV 729
+ C ++ + +W+ S+ E+CK V+K +++ H +F D+
Sbjct: 156 QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH-ELFGTDI 206
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPE---------S 502
+HSG+ + I+ LF ++V+ AT F +GL+ V+ S+ + S
Sbjct: 510 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN-MPAKTVVFTSVRKWDGQQFRWVS 568
Query: 503 LEEYVQEIGRAGRDG 517
EY+Q GRAGR G
Sbjct: 569 GGEYIQMSGRAGRRG 583
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPE---------S 502
+HSG+ + I+ LF ++V+ AT F +GL+ V+ S+ + S
Sbjct: 412 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN-MPAKTVVFTSVRKWDGQQFRWVS 470
Query: 503 LEEYVQEIGRAGRDG 517
EY+Q GRAGR G
Sbjct: 471 GGEYIQMSGRAGRRG 485
>pdb|3BOH|A Chain A, Carbonic Anhydrase From Marine Diatom Thalassiosira
Weissflo Cadmium Bound Domain 1 With Acetate (Cdca1-R1)
pdb|3BOH|B Chain B, Carbonic Anhydrase From Marine Diatom Thalassiosira
Weissflo Cadmium Bound Domain 1 With Acetate (Cdca1-R1)
pdb|3BOJ|A Chain A, Carbonic Anhydrase From Marine Diatom Thalassiosira
Weissflo Cadmium Bound Domain 1 Without Bound Metal
(Cdca1-R1)
Length = 213
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 50 PSISAFKSLETLPAGFCFRL---ASFTKIQKPSLRFENDQSLPTPSNPQGINEIKSDAFA 106
PS+ S + L GF F+L F + P +F+ DQ N G+ E+ + A
Sbjct: 93 PSVHGDHSSDMLGCGF-FKLWVTGRFDDMGYPRPQFDADQGAKAVENAGGVIEMHHGSHA 151
Query: 107 KKKKQINLV 115
+K INLV
Sbjct: 152 EKVVYINLV 160
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL 240
G+ + + Q ++I+ +L+ + + TG+GK+L + IPA+ L
Sbjct: 73 GFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVEL 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,188,280
Number of Sequences: 62578
Number of extensions: 807836
Number of successful extensions: 1554
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1457
Number of HSP's gapped (non-prelim): 98
length of query: 815
length of database: 14,973,337
effective HSP length: 107
effective length of query: 708
effective length of database: 8,277,491
effective search space: 5860463628
effective search space used: 5860463628
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)