BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036378
(815 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/891 (56%), Positives = 618/891 (69%), Gaps = 88/891 (9%)
Query: 1 METDSDSGGSHISATPPRCQNPPSPPPLQTN-----------TLSSSKSKVRIRRSFSQN 49
M+ DSDS GSH+SATPPR P SPP LQ+ T SSS+SK + N
Sbjct: 1 MDFDSDSDGSHVSATPPRDSFPSSPPQLQSPAKHVPPVSRKMTSSSSRSKPKAPTHPPPN 60
Query: 50 PSISA--------------------FKSLETLPAG----------FCFRLASFTKIQKPS 79
PS A F+ ++ PA C R ASFT ++K
Sbjct: 61 PSQEAPVPSPYPPPPPPSPLFTNLPFRICQSQPARFSSSVSSFSRLCSR-ASFTSVEK-- 117
Query: 80 LRFENDQSLPTPSNPQGINEIKSDAFAKKKKQINLVSVDVPLPPAK----LRKCNGEGNF 135
L+ + +P P + E+ + + ++K NL++ + PP K NGEGNF
Sbjct: 118 LKSDGVDFVPEPP----LVEVIAPPKSVRRKPPNLITDTITSPPVKPMVFRSNGNGEGNF 173
Query: 136 VRLNLNN-------NKRKFANKGKRNKSFRGKLSYRRTA-----------SELEL----- 172
V+LNLN +K K +K + + SFRGK ++ A S+L+
Sbjct: 174 VKLNLNGKRGKKFPSKYKGVSKSRSSYSFRGKRYKKKEADGDGESLLEEESDLQKQIEDE 233
Query: 173 -------VEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPT 225
VE+A+ AV+ EASDENL +LL LVYGYDSFRDGQL+AIKM+L STMLVLPT
Sbjct: 234 ANGFISSVEDAILAVKTEASDENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPT 293
Query: 226 GAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRL 285
GAGKSLCYQIPAMILPG+TLVV PLV+LMIDQL+HLP +I GG LSSSQRPEE ET+R
Sbjct: 294 GAGKSLCYQIPAMILPGITLVVSPLVSLMIDQLKHLPSIIKGGLLSSSQRPEEATETLRK 353
Query: 286 IQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL 345
++ G IKVLFVSPER LN +FLS+F + +SLVVVDEAHCVSEWSHNFRPSYMRL+AS+
Sbjct: 354 LKEGIIKVLFVSPERLLNVEFLSMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASM 413
Query: 346 LRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNE 405
L + L ECILAMTATATT TL+ VMS+LEIP +NLIQK+QLRDN +LSVSLSG NR +
Sbjct: 414 LFSELKAECILAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKD 473
Query: 406 RSAYVDEV-FSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRI 464
++ + RS Y Q +ETD+IS+YL DN+I+ K YHSG+PAKDR RI
Sbjct: 474 LLILMESPPYKEIRSIIVYCKFQ-----YETDMISKYLRDNNINAKGYHSGLPAKDRVRI 528
Query: 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524
QE FCSNKIRVVVATVAFGMGLDK DVGAVIH+S+P S+EEYVQEIGRAGRDGRLSYCHL
Sbjct: 529 QESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHL 588
Query: 525 FLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLVKESASRKFDIKEEV 584
F D+ TY +LRSL +SDGVDEYA+ KFL VF+ H K+CSLV ESAS+KFD+KEEV
Sbjct: 589 FYDNDTYLKLRSLAHSDGVDEYAVGKFLTHVFSTETKQHEKICSLVIESASQKFDMKEEV 648
Query: 585 MLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYV 644
M T+LT LELGE+QYL++LP+L + CTLNFHK++P LA + +VA ILKKS KQG +V
Sbjct: 649 MQTILTHLELGEVQYLRMLPQLNICCTLNFHKSSPNTLAARSAIVAAILKKSHVKQGLHV 708
Query: 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKW 704
FDIP VA+SI T DV ++ LKM+GE+TYELKD A+CYTI++ P + C+LS+HLTKW
Sbjct: 709 FDIPAVASSICVATTDVLAEIQALKMKGEVTYELKDSAFCYTILKSPKEICSLSSHLTKW 768
Query: 705 LSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDDNCDVPNK 764
L+E+E+CKVRKLD M AAV A+ V + +G+ T LQ I DYF GD+ CD P+K
Sbjct: 769 LTEIESCKVRKLDIMSSAAVAAISVSNTSELSSGAKQTRSLQSRIFDYFNGDEKCDSPSK 828
Query: 765 IGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWSKTHF 815
Q+ FLRADIKVFLQSN AKFTPRA+ARI+HG+ SPA+P+++WSKTHF
Sbjct: 829 ATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSVWSKTHF 879
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 229/709 (32%), Positives = 335/709 (47%), Gaps = 111/709 (15%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
GY +FR GQ AI +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 494 GYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLSL 553
Query: 254 MIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL---SIF 310
M DQ+ LP + L S ++ ++ ++ + VL VSPE + S+
Sbjct: 554 MDDQVSDLPSCLKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGARGPGSLP 613
Query: 311 TATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
A L I+ +DE HC+S+WSHNFRP Y+R+ +LR + V C L +TATAT +T R
Sbjct: 614 QAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRV-CKVLREHMGVRCFLGLTATATRSTAR 672
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVSLSGNNRQ-------NERSAYVDEVFSF---H 417
DV L I L A + NL LSVS+ ++ Q +R +D V +
Sbjct: 673 DVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVIIYCTRE 732
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
R + L + D R C ++YH+G+ +++R R+Q+ F +R+VV
Sbjct: 733 RIQNGWLALLRTCLSMVGDSRPRG-CGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVV 791
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL----DDITYFR 533
ATVAFGMGLD+ DV AV+H LP S E YVQ IGRAGRDG+ ++CHLF+ +D+ +
Sbjct: 792 ATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLFMHPQGEDL--WE 849
Query: 534 LRSLMYSDGVDEYAINKFLCQVFT--------------------NGMNSH---GKLC--- 567
LR ++D D A+ + + +VF +G ++ G+ C
Sbjct: 850 LRRHAHADSTDFLAVKRLVQRVFPPCTCSQRPVSKSSPEEVKEHSGQQTYPVLGQACLGH 909
Query: 568 --SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTL--LA 623
+L +S + D+ EE + TLL LEL +L+LLP C L+ + L LA
Sbjct: 910 ERALPVQSTVQALDMTEEAIETLLCYLELHPRHWLELLPWTYAQCHLHCLGGSAQLQALA 969
Query: 624 DKDKMVATILKK---SETKQGQ--YVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678
+ +A K +T QG+ F + +A+S+G V L LK E
Sbjct: 970 HRCPPLAACQAKWPPKDTSQGRSSLEFGVVELADSMGWKLASVRQALHQLKW----DPEP 1025
Query: 679 KDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNG 738
K A T V V F L+ HL + K + D +++ V + H
Sbjct: 1026 KKGAAQGTGVLV--KFSELAFHLHSRGDLTDEEKDQICDFLYN------RVQAREHKALA 1077
Query: 739 SLHT--------------PCLQ----------KNILDYF----------RGDDNCDVPN- 763
LH PCL+ K ++ Y+ D P
Sbjct: 1078 HLHQMSKAFRSVAFPSCGPCLEQSNEEHSNQVKTLVSYYFEEEEEEEETMTDTQGPKPGQ 1137
Query: 764 -KIGQSSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPSTIWS 811
++ +R D++ L +F+ RAVARI HGIASP YP+ ++
Sbjct: 1138 TQLQDWEDQIRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYG 1186
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 281 bits (720), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 229/737 (31%), Positives = 329/737 (44%), Gaps = 156/737 (21%)
Query: 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVAL 253
G+ +FR GQ A+ +L ST+LVLPTGAGKSLCYQ+PA++ P LTLVV PL++L
Sbjct: 477 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSL 536
Query: 254 MIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308
M DQ+ LPP IH G ++ QR E V + IR QV VL ++PE + A L
Sbjct: 537 MDDQVSGLPPCLKAACIHSG-MTRKQR-ESVLQKIRAAQV---HVLMLTPEALVGAGGLP 591
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
++ +DEAHC+S+WSHNFRP Y+R+ +LR R+ V C L +TATAT T
Sbjct: 592 PAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRV-CKVLRERMGVHCFLGLTATATRRTAS 650
Query: 369 DVMSALEIPLS-NLIQKAQLRDNLQLSVS------------LSGNNRQN--------ERS 407
DV L + +L A + NL LSVS L G QN R
Sbjct: 651 DVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNRR 710
Query: 408 AYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ + + R+ H + SG + ++YH+G+ +++R R+Q
Sbjct: 711 EDTERIAALLRTCLHAAWVPGSGGRA-----------PKTTAEAYHAGMCSRERRRVQRA 759
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F ++RVVVATVAFGMGLD+ DV AV+H LP S E YVQ +GRAGRDG+ ++CHLFL
Sbjct: 760 FMQGQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLFLQ 819
Query: 527 ---DDITYFRLRSLMYSDGVDEYAINKFLCQVFT-------------------------- 557
+D+ LR +++D D A+ + + +VF
Sbjct: 820 PQGEDLR--ELRRHVHADSTDFLAVKRLVQRVFPACTCTCTRPPSEQEGAVGGERPVPKY 877
Query: 558 ----------NGMNSHGKLC-----SLVKESASRKFDIKEEVMLTLLTCLELGEIQYLQL 602
++C +L + + D+ EE + TLL LEL +L+L
Sbjct: 878 PPQEAEQLSHQAAPGPRRVCMGHERALPIQLTVQALDMPEEAIETLLCYLELHPHHWLEL 937
Query: 603 LPELKVTCTLNFHKTTPTL--LADKDKMVATILKKS---ETKQG--QYVFDIPTVANSIG 655
L C LN L LA + +A L + + QG FD+ + +S+G
Sbjct: 938 LATTYTHCRLNCPGGPAQLQALAHRCPPLAVCLAQQLPEDPGQGSSSVEFDMVKLVDSMG 997
Query: 656 ATTIDVSNQLLNLKM---------RG--------EITYELKDPAYCYTIVEVPSDFCALS 698
V L L+ RG E+ + L+ P E C
Sbjct: 998 WELASVRRALCQLQWDHEPRTGVRRGTGVLVEFSELAFHLRSPG--DLTAEEKDQICDFL 1055
Query: 699 AHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQ----------KN 748
+ ++R+ + FH+ F C PCL+ K+
Sbjct: 1056 YGRVQARERQALARLRRTFQAFHSVAFP--------SCG-----PCLEQQDEERSTRLKD 1102
Query: 749 ILD-YF----------RGDDNCDVPN--KIGQSSPFLRADIKVFLQSNLNAKFTPRAVAR 795
+L YF D P ++ +R DI+ FL KF+ RAVAR
Sbjct: 1103 LLGRYFEEEEGQEPGGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSSRAVAR 1162
Query: 796 ILHGIASPAYPSTIWSK 812
I HGI SP YP+ ++ +
Sbjct: 1163 IFHGIGSPCYPAQVYGQ 1179
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 198/337 (58%), Gaps = 12/337 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
LL +GY+ FR GQ EAI++V + +++T ++PTG GKS+CYQIPA++ G T+V+ PL
Sbjct: 8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L I+ +++S+Q +E+ E + ++ GA K+ +++PER + +F+ I
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSIEFIRI 127
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ LV +DEAHC+S+W H+FRPSY + L R + I+A+TATAT D
Sbjct: 128 LQGID-VPLVAIDEAHCISQWGHDFRPSYRNIEI-LFRELHDKPVIMALTATATPEVHDD 185
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L I N + R+NL V + G N+ ++DE + ++++H + +
Sbjct: 186 ICKQLHIQKENTVYTGFSRENLTFKV-VKGENKDR----FIDE---YVQNNRHEAGIVYT 237
Query: 430 GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489
E D I L N + YH G+ R QE F +++++V+VAT AFGMG+DK
Sbjct: 238 ATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKS 297
Query: 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526
++ V+H +P+ +E Y QE GRAGRDG S C L
Sbjct: 298 NIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLF 334
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 227 bits (578), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/369 (35%), Positives = 207/369 (56%), Gaps = 20/369 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L +G SFR QL+ I L +++PTG GKSLCYQ+PA++ G+T+V+ PL +
Sbjct: 729 LSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKS 788
Query: 253 LMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI--QVGAIKVLFVSPERFLNA----D 305
L+ DQ+ L + I LS Q+ +V R + Q +K+L+V+PE+ ++ D
Sbjct: 789 LIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQD 848
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
L + + IS V+DEAHCVS+W H+FRP Y +L +L+ R +A+TATAT
Sbjct: 849 TLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKL--GVLKKRFPNVPTIALTATATPR 906
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYY- 424
D+++ L + + R NL+ V + + +D++ + RS ++
Sbjct: 907 VRLDILAQLNLKNCKWFLSSFNRSNLRYRV------LPKKGVSTLDDISRYIRSKPQHFS 960
Query: 425 --ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
I +S K E D S+ +C + + SYH+G+ DR Q+ + + K+RV+ ATVAF
Sbjct: 961 GIIYCLSRK--ECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAF 1018
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG 542
GMG+DK DV V+HYSLP+S+E Y QE GRAGRDG ++ C L+ + R++ ++ SD
Sbjct: 1019 GMGIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDK 1078
Query: 543 VDEYAINKF 551
+Y + K
Sbjct: 1079 ALQYNVKKI 1087
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 219 bits (559), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 126/348 (36%), Positives = 197/348 (56%), Gaps = 12/348 (3%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+GY SFR GQ E I L+ + ++V+ TG GKSLCYQIPA+ GLTLV+ PL+
Sbjct: 19 VLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLI 78
Query: 252 ALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I FL+SSQ E+ + + G +K+L+VSPE+ + F +
Sbjct: 79 SLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLI 138
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ S + + +DEAHC+S+W H+FRP Y +L L+A I+A+TATA T +D+
Sbjct: 139 S-YSKVCFIAIDEAHCISQWGHDFRPEYTQLGG--LKASFPDAPIMALTATADYATQQDI 195
Query: 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430
+ L L NL + D + +L E+ ++++ F + K +
Sbjct: 196 LRHLN--LKNLHKYIGSFDRPNIRYTLE------EKYKPMEQLTRFVLAQKGKSGIIYCN 247
Query: 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490
+ + I+ L + +S +YH+G+ R R+Q+ F + ++VVVAT+AFGMG++K +
Sbjct: 248 SRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSN 307
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
V V H+ LP S+E Y QE GRAGRD + LF + Y L+ ++
Sbjct: 308 VRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKIL 355
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 200/347 (57%), Gaps = 16/347 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GY FR GQ E I VL + ++V+PTG GKSLCYQIPA++L GLT+VV PL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 251 VALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + L+S+Q E+ E + + G I++L+++PER + +FL
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH 134
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ + L+ VDEAHC+S+W H+FRP Y L LR R +A+TATA TT +D
Sbjct: 135 LAHWNPV-LLAVDEAHCISQWGHDFRPEYAAL--GQLRQRFPTLPFMALTATADDTTRQD 191
Query: 370 VMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
++ L + LIQ + R N++ + E+ +D++ + + + +
Sbjct: 192 IVRLLGLN-DPLIQISSFDRPNIRYMLM--------EKFKPLDQLMRYVQEQRGKSGIIY 242
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + + L IS +YH+G+ R+ +QE F + +++VVATVAFGMG++K
Sbjct: 243 CNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/357 (35%), Positives = 196/357 (54%), Gaps = 30/357 (8%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L V+GY SFR GQ E I L K +++++ TG GKSLCYQIPA+ GLTLV+ PL+
Sbjct: 29 VLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISPLI 88
Query: 252 ALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310
+LM DQ+ L I +L+SSQ E + + G +K+L+VSPE+ + F +
Sbjct: 89 SLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSGTLKLLYVSPEKVMTTSFFHLI 148
Query: 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370
+ +S V +DEAHC+S+W H+FRP Y +L L++ I+A+TATA T +D+
Sbjct: 149 SHCK-VSFVAIDEAHCISQWGHDFRPEYTQLGG--LKSCFPHAPIMALTATADHATRQDI 205
Query: 371 MSALEIPLSNLIQKAQLRDNLQL-SVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS 429
+ L NLQ V + +R N R V++ + + ++L
Sbjct: 206 LRHL---------------NLQSPHVYIGSFDRPNIRYTLVEKFKPMEQLCR--FVLGQK 248
Query: 430 GK--------HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481
GK + + I+ L + +S ++YH+G+ R ++Q F + ++VVVAT+A
Sbjct: 249 GKSGIIYCNSRSKVERIAESLRNKGVSAQAYHAGLETSQREQVQRAFQRDNVQVVVATIA 308
Query: 482 FGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
FGMG++K +V V+H+ LP S+E Y QE GRAGRD + LF + Y L ++
Sbjct: 309 FGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKIL 365
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/347 (35%), Positives = 197/347 (56%), Gaps = 16/347 (4%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++L+ +GY FR GQ I L + ++V+PTG GKSLCYQIPA++L GLT+VV PL
Sbjct: 15 QVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPL 74
Query: 251 VALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309
++LM DQ+ L + L+S+Q E+ E + + G I++L+++PER + +FL
Sbjct: 75 ISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQIRLLYIAPERLMLDNFLDH 134
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
+ + L+ VDEAHC+S+W H+FRP Y L LR R +A+TATA TT +D
Sbjct: 135 LAHWNPV-LLAVDEAHCISQWGHDFRPEYAAL--GQLRQRFPALPFMALTATADDTTRQD 191
Query: 370 VMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428
++ L + LIQ + R N++ + E+ +D++ + + + +
Sbjct: 192 IIRLLGLN-DPLIQISSFDRPNIRYMLM--------EKFKPLDQLMRYVQEQRGKSGIIY 242
Query: 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488
+ + + L IS +YH+G+ R +QE F + +++VVATVAFGMG++K
Sbjct: 243 CNSRAKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMGINK 302
Query: 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFR 533
+V V+H+ +P ++E Y QE GRAGRDG + LF D D+ + R
Sbjct: 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 126/339 (37%), Positives = 198/339 (58%), Gaps = 13/339 (3%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A E L +LLR +G+ FR QLEAI+ V+ + ++PTG GKS+CYQIPA+ PG+
Sbjct: 19 AGKEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGI 78
Query: 244 TLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVG--AIKVLFVSPER 300
LVV PL+ALM +Q+ L I +LSS+Q + + G ++++L+V+PE
Sbjct: 79 VLVVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPEL 138
Query: 301 FLNADF---LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILA 357
F L + L++L+ +DEAHC+S W H+FRPSY +L S LR L +LA
Sbjct: 139 IATKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQL--STLRDSLADVPVLA 196
Query: 358 MTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH 417
+TATA +DV+ +L + +++ + R N+ V + +AY D + +
Sbjct: 197 LTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRY----KDLLDNAYTD-LGNLL 251
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
+S + + + D +S +L IS +YH+G+ +K RS + + + S+K +++V
Sbjct: 252 KSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIV 311
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD 516
ATVAFGMG+DK+DV V H+++P+S+E + QE GRAGRD
Sbjct: 312 ATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRD 350
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 206 bits (525), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 203/366 (55%), Gaps = 25/366 (6%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++ +G FR QLEAI L + +++PTG GKSLCYQ+P I PG+T+V+ PL
Sbjct: 609 KIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGVTIVISPL 668
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA----IKVLFVSPERFLNAD 305
+L++DQ++ L + I +L+ + E A +Q+ IK+L+V+PE+ +
Sbjct: 669 RSLIVDQVQKLTSLDIPATYLTGDKTDAEAASI--YLQLSKKDPIIKLLYVTPEKVCAST 726
Query: 306 FL----SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L L++ V+DEAHCVS+W H+FRP Y RL ++LR + ++A+TAT
Sbjct: 727 RLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRL--NVLRQKFQSVPMMALTAT 784
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY--VDEVFSFHRS 419
A +D+++ L++ + + RDNL+ V ++ +R A V+ + H +
Sbjct: 785 ANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLP----KKPKRVALDCVEWIKKHHPN 840
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS-NKIRVVVA 478
I+ +H E D ++ L ++ +YH+G+ +R +Q + + + +V+ A
Sbjct: 841 DSG--IIYCLSRH-ECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICA 897
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRLRS 536
T+AFGMG+DK DV VIH SLP+S+E Y QE GRAGRDG S+C LF D+T R
Sbjct: 898 TIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLI 957
Query: 537 LMYSDG 542
M DG
Sbjct: 958 QMEKDG 963
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 206 bits (524), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 182/333 (54%), Gaps = 8/333 (2%)
Query: 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247
L + L +G+ SF+ GQ + I+ +L K T+ +LPTG GKSLCYQ+P +L G+ L+V
Sbjct: 3 KLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIV 62
Query: 248 CPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307
PL++LM DQ++ L + + L + K L++SPE + L
Sbjct: 63 SPLLSLMEDQVQQLKARGEKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVL 122
Query: 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
+ ISL V+DEAHC+SEW H+FRP Y +L LR +L +LA+TATAT TL
Sbjct: 123 EKLKSVP-ISLFVIDEAHCISEWGHDFRPDYSKL--GQLRKKLGHPPVLALTATATKETL 179
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
+DVM+ LE+ + + R N+ L V + + + +D V + + I+
Sbjct: 180 QDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEK-----IDRVIQLVENLQGPGIVY 234
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
+ + +L S YH G+ + DR IQ+ F N++ V+ T AFGMG+D
Sbjct: 235 CPTRKWAKELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVD 294
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLS 520
K D+ VIH+ LP++ E ++QEIGRAGRDG+ S
Sbjct: 295 KPDIRYVIHFHLPQTAEAFMQEIGRAGRDGKPS 327
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 206 bits (523), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 200/360 (55%), Gaps = 44/360 (12%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
L+ V+G+DSF+ E+ M + K K + +PTGAGKSLCYQ+PA++ G+T+VV PL
Sbjct: 20 LKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPL 79
Query: 251 VALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305
+AL+ DQ+ HL + LS+ +R E +A+ R + K+L+++PE ++
Sbjct: 80 IALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLER--EKPQTKILYITPEMAASSS 137
Query: 306 F---LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
F L+ + L+S +VVDEAHCVS+W H+FRP Y+RL A LR+RL +A+TATA
Sbjct: 138 FQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGA--LRSRLGHAPCVALTATA 195
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQ-LRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK 421
T DV +AL + I K R NL V E+ S +
Sbjct: 196 TPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFK-------------ELISDPYGNL 242
Query: 422 HYYILQISGKHFETDLI--------SRYLCDN--------SISVKSYHSGIPAKDRSRIQ 465
+ L+ G+ + L +R C+ ++ K+YH+G+ A +R+ +Q
Sbjct: 243 KDFCLKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQ 302
Query: 466 ELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+ K+ V+VAT++FGMG+DK +V V H+++ +S+ Y QE GRAGRDG+ S+C L+
Sbjct: 303 NDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 362
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 206 bits (523), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 192/362 (53%), Gaps = 24/362 (6%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----L 240
SDE L RL V+ FR QLEA+ L K +++PTG GKSLCYQ+PA++
Sbjct: 663 SDEVLYRLHE-VFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKT 721
Query: 241 PGLTLVVCPLVALMIDQLRHL-PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPE 299
G T+V+ PL++LM DQ+ HL I SS E+ +T L G + ++++SPE
Sbjct: 722 HGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLVYISPE 781
Query: 300 RFLNAD----FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECI 355
++ +S A ++ +VVDEAHCVS W H+FRP Y L+ + +
Sbjct: 782 MISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELK--FFKREYPDIPM 839
Query: 356 LAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFS 415
+A+TATA+ D++ LE+ ++++ R NL V+ N E V F
Sbjct: 840 IALTATASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKTKNTIFEICDAVKSRFK 899
Query: 416 FHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
++ I S K E S + N I YH+G+ +R +Q+ + +++I+V
Sbjct: 900 ----NQTGIIYCHSKKSCEQ--TSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQV 953
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLR 535
+ ATVAFGMG+DK DV V H+++P +LE Y QE GRAGRDG SYC ITYF R
Sbjct: 954 ICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYC------ITYFSFR 1007
Query: 536 SL 537
+
Sbjct: 1008 DI 1009
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 206 bits (523), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 137/378 (36%), Positives = 203/378 (53%), Gaps = 37/378 (9%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG-- 242
S E LG L+ + FR QLEAI L K +++PTG GKSLCYQ+PA+I G
Sbjct: 504 SKEVLG-CLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGAS 562
Query: 243 --LTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAI--KVLFVS 297
+TLV+ PL++LM DQL HL + I LS Q +E + I + + K+L+V+
Sbjct: 563 RGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVT 622
Query: 298 PERFLN----ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVE 353
PE + L L++ +V+DEAHCVS W H+FRP Y +L LLR R
Sbjct: 623 PEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQL--GLLRDRYQGI 680
Query: 354 CILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV 413
+A+TATA +D+++ L + ++ + R NL + + ++ Y E+
Sbjct: 681 PFMALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEI-------KPKKDLYT-EL 732
Query: 414 FSF------HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ F H S Y + + S + L + Y + YH+G+ +R RIQ
Sbjct: 733 YRFISNGHLHESGIIYCLSRTSCEQVAAKLRNDY----GLKAWHYHAGLEKVERQRIQNE 788
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
+ S +++VAT+AFGMG+DK DV VIH+S P+SLE Y QE GRAGRDG+ ++C +F
Sbjct: 789 WQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYS 848
Query: 527 --DDITYFRLRSLMYSDG 542
D +T+ +L +M DG
Sbjct: 849 YKDHVTFQKL--IMSGDG 864
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 196/356 (55%), Gaps = 19/356 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L+ +G++ FR Q + I L T +++PTGAGKSLCYQ+PA+ILPG+T+VV PL +
Sbjct: 239 LKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVSPLRS 298
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGA----IKVLFVSPERF-----LN 303
L+ DQ + + G ++ E I ++G+ IK+L+V+PE+ LN
Sbjct: 299 LIEDQKMKMKELGIGCEALTADLGAPAQEKI-YAELGSGNPSIKLLYVTPEKISASGRLN 357
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC-ILAMTATA 362
+ F + L++ V+DEAHCVS+W H+FRP Y +L +SL N I+A+TATA
Sbjct: 358 SVFFDLHR-RGLLARFVIDEAHCVSQWGHDFRPDYTKL-SSLREKYANPPVPIIALTATA 415
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKH 422
T + D L++ S L + +RDNL+ + + +++ K
Sbjct: 416 TPKIVTDARDHLKMQNSKLFISSFVRDNLKYDLIPKAARSLINVVEKMKQLYP----GKS 471
Query: 423 YYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
+ +S K ET + L +S + YH+G+ R +Q + +NK V+ AT+AF
Sbjct: 472 GIVYCLSRKECET--VQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAF 529
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
GMG+DK DV VIHYSLP+S+E Y QE GRAGRDG SYC + RLR ++
Sbjct: 530 GMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMI 585
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 203 bits (516), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 128/374 (34%), Positives = 202/374 (54%), Gaps = 21/374 (5%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMI 255
V+G SFR Q E I + +++PTG GKSL YQ+PA+I G+TLV+ PLV+L+
Sbjct: 448 VFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQ 507
Query: 256 DQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQV-----GAIKVLFVSPERFLNAD---- 305
DQ+ +L I LS+ E AE +++ Q K+L+V+PE+ +D
Sbjct: 508 DQIMNLLQANIPAASLSAGM---EWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLR 564
Query: 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365
L + L++ V+DEAHCVS+W H+FRP Y L +L+ + +LA+TATAT +
Sbjct: 565 HLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSL--GILKQKFPNIPVLALTATATAS 622
Query: 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYI 425
DV+ AL + + +++ R NL SV + ++ E F Y +
Sbjct: 623 VKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENH-FDECGIIYCL 681
Query: 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485
++ + + +S L + YH + + R+ IQ + ++I ++ ATVAFGMG
Sbjct: 682 SRM-----DCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMG 736
Query: 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDE 545
++K DV VIH+SLP+S+E Y QE GRAGRDG+ S C L+ Y R++ ++ GVD+
Sbjct: 737 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQ 796
Query: 546 YAINKFLCQVFTNG 559
+ +V ++G
Sbjct: 797 SPMATGYNRVASSG 810
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 202/364 (55%), Gaps = 13/364 (3%)
Query: 185 SDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244
SDE ++L+ + + FR Q AI V+ K+ +++L TG GKSLCYQ+PA++ GLT
Sbjct: 71 SDE-ANQILKNKFRLEKFRPLQSAAINAVMSKEDAIVILSTGGGKSLCYQLPALLAKGLT 129
Query: 245 LVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA--IKVLFVSPERF 301
LV+ PLV+L+ DQ+ L + I L+++ +E + I G+ +++L+V+PE+
Sbjct: 130 LVISPLVSLVEDQIMQLQKLGIDAASLNANTPKDEAKRVEQAITKGSTELRLLYVTPEKL 189
Query: 302 LNADFLSIFTATSL----ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILA 357
+ + SL + L+ +DE HC S+W H+FR Y L ++L+ + IL
Sbjct: 190 AKSKRMMNQLEKSLGVGYLKLIAIDEVHCCSQWGHDFRTDYSFL--NVLKRQFKGVPILG 247
Query: 358 MTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH 417
+TATAT+ L DV L IP++ + + R NL V L+ ++E +
Sbjct: 248 LTATATSNVLDDVKKMLGIPVAIVFRAGFNRANLNYKV-LTKPGSEDECVEKIVRTIKRK 306
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
S K I +S E +++ L N I K YH+ + DRS + + S +I+V+V
Sbjct: 307 FSGKTGIIYCLSRNDCEK--LAKSLKANGIRAKHYHAYMEPVDRSAAHQKWVSGEIQVIV 364
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537
ATVAFGMG+DK DV VIH+SLP+S+E Y QE GRAGRDG + C L+ F+ S+
Sbjct: 365 ATVAFGMGIDKPDVRFVIHHSLPKSIENYYQESGRAGRDGLPATCILYYRMSDIFKQSSM 424
Query: 538 MYSD 541
+ +
Sbjct: 425 IQQE 428
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 202/365 (55%), Gaps = 23/365 (6%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++ +G +FR QLEAI L + +++PTG GKSLCYQ+PA + PG+T+V+ PL
Sbjct: 665 KIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPL 724
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA----IKVLFVSPERFLNAD 305
+L++DQ++ L I +L+ + E A +Q+ IK+L+V+PE+ ++
Sbjct: 725 RSLIVDQVQKLTSFDIPATYLTGDKTDSEAANI--YLQLSKKDPIIKLLYVTPEKVCASN 782
Query: 306 ----FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L L++ V+DEAHCVS+W H+FR Y R+ ++LR + ++A+TAT
Sbjct: 783 RLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRM--NMLRQKFPSVPVMALTAT 840
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY-VDEVFSFHRSS 420
A +D+++ L+I + + R NL+ V ++ ++ A+ E H
Sbjct: 841 ANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVL----PKKPKKVAFDCLEWIRKHHPY 896
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS-NKIRVVVAT 479
I +S + E D ++ L ++ +YH+G+ R +Q + + + +V+ AT
Sbjct: 897 DSGIIYCLSRR--ECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICAT 954
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSL 537
+AFGMG+DK DV VIH SLP+S+E Y QE GRAGRDG +S+C LF D+T + +
Sbjct: 955 IAFGMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIM 1014
Query: 538 MYSDG 542
M DG
Sbjct: 1015 MEKDG 1019
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/369 (34%), Positives = 203/369 (55%), Gaps = 21/369 (5%)
Query: 187 ENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246
+NL +LV+G SFR Q E I + +++PTG GKSL YQ+PA++ G+TLV
Sbjct: 455 KNLEVYNKLVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAGITLV 514
Query: 247 VCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQ-----VGAIKVLFVSPER 300
+ PLV+L+ DQ+ +L I LS+ E AE + ++Q K+L+V+PE+
Sbjct: 515 ISPLVSLIQDQIMNLLQTNISAASLSAGM---EWAEQLEILQELSSEKSKYKLLYVTPEK 571
Query: 301 FLNAD----FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECIL 356
++ L I + SL++ V+DEAHCVS+W H+FRP Y L +L+ + +L
Sbjct: 572 VAKSESLLRHLEILNSRSLLARFVIDEAHCVSQWGHDFRPDYQGL--GVLKQKFPNIPML 629
Query: 357 AMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF 416
A+TATATT+ DV+ AL + + +++ R NL SV N + ++ E F
Sbjct: 630 ALTATATTSVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTNKCLEDIDKFIRENH-F 688
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
Y + ++ + + ++ L YH + R+ +Q+ + ++I ++
Sbjct: 689 DECGIIYCLSRM-----DCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINII 743
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
ATVAFGMG++K DV VIH+SLP+S+E Y QE GRAGRDG+ S C L+ Y R++
Sbjct: 744 CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYIRVKH 803
Query: 537 LMYSDGVDE 545
++ G+ +
Sbjct: 804 MISQGGLGQ 812
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 130/382 (34%), Positives = 207/382 (54%), Gaps = 22/382 (5%)
Query: 173 VEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLC 232
E R ++ S+E L ++ +G SFR QLEAI L + +++PTG GKSLC
Sbjct: 370 AHERFRGMKFSHSEEML-KIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLC 428
Query: 233 YQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI--QVG 289
YQ+PA + G+T+V+ PL +L+IDQ++ L + I +L+ + ++T + +
Sbjct: 429 YQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDP 488
Query: 290 AIKVLFVSPE------RFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRA 343
IK+L+V+PE R L+A L L++ V+DEAHCVS+W H+FR Y RL
Sbjct: 489 IIKLLYVTPEKVCASNRLLSA--LENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRL-- 544
Query: 344 SLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQ 403
++LR + + ++A+TATA +D+ + LE+ + + R NL+ V +
Sbjct: 545 NMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVL-----PK 599
Query: 404 NERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSR 463
+ +D + + H + E D + L ++ +YH+G+ +R
Sbjct: 600 KPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDL 659
Query: 464 IQELFCSNK-IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
+Q+ + + + +V+ AT+AFGMG+DK DV VIH SLP+S+E Y E GRAGRDG +S+C
Sbjct: 660 VQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEMSHC 719
Query: 523 HLF--LDDITYFRLRSLMYSDG 542
LF D+T R LM DG
Sbjct: 720 LLFYSYSDVTRLRRLILMEKDG 741
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 204/365 (55%), Gaps = 23/365 (6%)
Query: 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPL 250
++ +G +FR QLEAI L + +++PTG GKSLCYQ+PA + PG+T+V+ PL
Sbjct: 657 KIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPL 716
Query: 251 VALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA----IKVLFVSPERFLNAD 305
+L++DQ++ L + I +L+ + E +Q+ IK+L+V+PE+ ++
Sbjct: 717 RSLIVDQVQKLTSLDIPATYLTGDKTDSEATNI--YLQLSKKDPIIKLLYVTPEKICASN 774
Query: 306 ----FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
L L++ V+DEAHCVS+W H+FR Y R+ ++LR + ++A+TAT
Sbjct: 775 RLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRM--NMLRQKFPSVPVMALTAT 832
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY-VDEVFSFHRSS 420
A +D+++ L+I + + R NL+ V ++ ++ A+ E H
Sbjct: 833 ANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVL----PKKPKKVAFDCLEWIRKHHPY 888
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS-NKIRVVVAT 479
I +S + E D ++ L + ++ +YH+G+ R +Q+ + + + +V+ AT
Sbjct: 889 DSGIIYCLSRR--ECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICAT 946
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF--LDDITYFRLRSL 537
+AFGMG+DK DV VIH SLP+S+E Y QE GRAGRDG +S+C LF D+T + +
Sbjct: 947 IAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIM 1006
Query: 538 MYSDG 542
M DG
Sbjct: 1007 MEKDG 1011
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/340 (35%), Positives = 197/340 (57%), Gaps = 23/340 (6%)
Query: 195 LVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALM 254
+++G FR Q +A + +++K +++PTG GKSLCYQ+PA + G+T+V+ PL++L+
Sbjct: 200 VIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLI 259
Query: 255 IDQL--RHLPPVIHGGFLSSSQRPEEVAETIRLIQVG--AIKVLFVSPERFLNA----DF 306
DQ+ +L I FL+S Q + A ++ ++ + K+L+V+PE+ + +
Sbjct: 260 QDQIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSFLET 319
Query: 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366
L L++ VVDEAHCVS+W H+FRP Y L L+ ++A+TATAT +
Sbjct: 320 LRCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYREL--GCLKQNFPRVPVMALTATATESV 377
Query: 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFS--FHRSSKHYY 424
+DV+ +L IP + +++ + R NL+ V + + E + E+ F S Y
Sbjct: 378 CQDVLKSLRIPRAPVLKMSFDRINLKYEVIV----KTKEPLKQLQELLRDRFKDQSGIVY 433
Query: 425 ILQISGKHFETDLISRYLCDNSISVKS--YHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482
L S E ++++L + VK+ YH+G+PAK R +Q + + ++R+V AT+AF
Sbjct: 434 CLSKS----ECVDVAKFL-NEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAF 488
Query: 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC 522
GMG+DK DV VIH +L +++E Y QE GRAGRDG + C
Sbjct: 489 GMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQC 528
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 145/414 (35%), Positives = 212/414 (51%), Gaps = 51/414 (12%)
Query: 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMI 255
V+G +R Q E I ++ + ++++ G GKSLCYQ+PAM+ G TLVV PL++L+
Sbjct: 84 VFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQ 143
Query: 256 DQLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGA--IKVLFVSPERFLNAD-FLSIFT 311
DQ+ L + I L+S+ E + ++ G +K+L+V+PE+ + F+S
Sbjct: 144 DQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSKRFMSKLE 203
Query: 312 A---TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
+SL+ +DEAHC S+W H+FRP Y L S+L+ + ++A+TATAT
Sbjct: 204 KCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNL--SILKTQFPKVPMVALTATATQKVQN 261
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY----VDEVFSFHRSSKHYY 424
D++ L IP + R NL SV E+SA VDE+ F R S Y
Sbjct: 262 DLIEMLHIPKCVKFVSSVNRPNLFYSV--------REKSAVGKLVVDEIAEFIRES---Y 310
Query: 425 ILQISGKHF-----ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
SG + E + I+ L + IS YH+ + A R ++ + NK++V+V T
Sbjct: 311 SNNESGIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGT 370
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM- 538
VAFGMG++K DV VIH+SL +S+E Y QE GRAGRDG S C LF R S++
Sbjct: 371 VAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPRQSSMVF 430
Query: 539 --YSDGVDEYAINKFLCQVFT------------------NGMNSHGKLCSLVKE 572
YS + Y I ++ CQ T NGM + L S VKE
Sbjct: 431 YEYSGLQNLYDIVRY-CQSKTKCRRSAFFRHFGEPSQDCNGMCDNCALSSEVKE 483
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/378 (35%), Positives = 201/378 (53%), Gaps = 26/378 (6%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+LR V+ FR QLE + + +K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 82 VLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV--AETIRLIQVGAIKVLFVSPERFLNAD-FL 307
+LM DQL L + I L+SS E V T + + +K+++V+PE+ + F+
Sbjct: 142 SLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKMFM 201
Query: 308 S----IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
S + A L V VDE HC S+W H+FRP Y L +L+ + ++ +TATAT
Sbjct: 202 SRLEKAYEAGRLTG-VAVDEVHCCSQWGHDFRPDYKAL--GILKRQFPNISLIGLTATAT 258
Query: 364 TTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSA--YVDEVFSF---HR 418
L+D L + + R NL V RQ SA +++ + +
Sbjct: 259 NHVLKDAQKILCVEKCLTFTASFNRPNLYYEV------RQKPSSAEDFIENIANLINGRY 312
Query: 419 SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478
K I S K E IS L + +YH+ + +DR+++ + +N+++VVVA
Sbjct: 313 KGKSGIIYCFSQKDSEQVTIS--LQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVA 370
Query: 479 TVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
TVAFGMG+DK DV VIH+S+ +S+E Y QE GRAGRD + C L+ FR+ S++
Sbjct: 371 TVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRISSMV 430
Query: 539 YSDGVDEYAINKFL--CQ 554
+ V + + + + CQ
Sbjct: 431 VMENVGQQKLYEMVSYCQ 448
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 183/334 (54%), Gaps = 11/334 (3%)
Query: 195 LVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALM 254
+VYGYD+FR Q E I V++ + +L T AGKSLC+QIPA+ L +++ PL++LM
Sbjct: 23 MVYGYDNFRPRQYEIINKVINGEDVCAILMTSAGKSLCFQIPALYLDKPAIIISPLISLM 82
Query: 255 IDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN-ADFLSIFTAT 313
DQ R + + + E A+ + I K ++VSPE ++ D +
Sbjct: 83 EDQ-RLILEKLGISSCCYNSNVENKAQMRKDIMQFKYKFIYVSPESVVHLKDLIVKLEDF 141
Query: 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSA 373
ISL+ +DEAHC+S + +FR +Y + + + L ILA+TATAT +D+
Sbjct: 142 QGISLIAIDEAHCISAYGFDFRTAYREI--TFFKEILPNVPILALTATATNIVAKDICKV 199
Query: 374 LEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHF 433
L++ + I+ + R NL L V N N+ +++ + S Y L
Sbjct: 200 LQLKTNEPIKASFDRPNLYLEVRTKSKNPANDIVPIINK---YPNQSVIIYCLTKK---- 252
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
ET I+ L + + YH+G+ + +++ F +NKI++VVAT+AFGMG++K DV
Sbjct: 253 ETQKIADILTVHKVVCGIYHAGLSNEHKTKTHTNFINNKIKIVVATIAFGMGINKPDVRV 312
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
VIHY P+++E Y QEIGRAGRDG SYC+ F +
Sbjct: 313 VIHYGAPKNIEGYYQEIGRAGRDGEKSYCYAFYN 346
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 127/377 (33%), Positives = 200/377 (53%), Gaps = 24/377 (6%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+ + FR QLE I + + K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 82 ILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPERFLNAD- 305
+LM DQL L + I L++S E V AE + + +K+++V+PE+ +
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVN--KNSELKLIYVTPEKIAKSKM 199
Query: 306 FLSIFT---ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
F+S + + VDE HC S+W H+FRP Y L +L+ + ++ +TATA
Sbjct: 200 FMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKAL--GILKRQFPNASLIGLTATA 257
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF---HRS 419
T L D L I + R NL V +N ++ +++++
Sbjct: 258 TNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTED----FIEDIVKLINGRYK 313
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
+ I S K E +S L + I +YH+ + +D++ + + +N+I+VVVAT
Sbjct: 314 GQSGIIYCFSQKDSEQVTVS--LQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539
VAFGMG+DK DV VIH+S+ +S+E Y QE GRAGRD + C L+ FR+ S++
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVV 431
Query: 540 SDGVDEYAINKFL--CQ 554
+ V + + + + CQ
Sbjct: 432 MENVGQQKLYEMVSYCQ 448
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 132/380 (34%), Positives = 202/380 (53%), Gaps = 30/380 (7%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+ FR QLE I + + +K LV+PTG GKSLCYQ+PA+ G TLV+CPL+
Sbjct: 82 VLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPERFLNAD- 305
+LM DQL L + I L++S E V AE + + +K+++V+PE+ +
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVN--KNSQLKLIYVTPEKIAKSKM 199
Query: 306 FLS----IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
F+S + A L VDE HC S+W H+FRP Y L +L+ + ++ +TAT
Sbjct: 200 FMSRLEKAYEAGRLTG-AAVDEVHCCSQWGHDFRPDYKAL--GILKRQFPNASLMGLTAT 256
Query: 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSA--YVDEVFSF--- 416
AT L+DV L + + R NL V RQ SA + +++
Sbjct: 257 ATNHVLKDVQKILCVGKCLTFTASFNRPNLFYEV------RQKPSSAEDFTEDIVKLING 310
Query: 417 HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476
+ I S K E IS L I +YH+ + +D++++ + +N+++VV
Sbjct: 311 RYKGQSGIIYCFSQKDSEQITIS--LQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVV 368
Query: 477 VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536
VATVAFGMG+DK DV VIH+S+ +S+E Y QE GRAGRD + C L+ FR+ S
Sbjct: 369 VATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIFRISS 428
Query: 537 LMYSDGVDEYAINKFL--CQ 554
++ + V + + + + CQ
Sbjct: 429 MVVMENVGQQKLYEMVSYCQ 448
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 126/377 (33%), Positives = 198/377 (52%), Gaps = 24/377 (6%)
Query: 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
+L+ V+ FR QLE I + + K LV+PTG GK LCYQ+PA+ G TLV+CPL+
Sbjct: 82 VLQNVFKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKGLCYQLPALCSDGFTLVICPLI 141
Query: 252 ALMIDQLRHLPPV-IHGGFLSSSQRPEEV----AETIRLIQVGAIKVLFVSPERFLNAD- 305
+LM DQL L + I L++S E V AE + + +K+++V+PE+ +
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVN--KNSELKLIYVTPEKIAKSKM 199
Query: 306 FLSIFT---ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362
F+S + + VDE HC S+W H+FRP Y L +L+ + ++ +TATA
Sbjct: 200 FMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKAL--GILKRQFPNASLIGLTATA 257
Query: 363 TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF---HRS 419
T L D L I + R NL V +N ++ +++++
Sbjct: 258 TNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTED----FIEDIVKLINGRYK 313
Query: 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479
+ I S K E +S L + I +YH+ + +D++ + + +N+I+VVVAT
Sbjct: 314 GQSGIIYCFSQKDSEQVTVS--LRNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 371
Query: 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539
VAFGMG+DK DV VIH+S+ +S+E Y QE GRAGRD + C L+ FR+ S++
Sbjct: 372 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVV 431
Query: 540 SDGVDEYAINKFL--CQ 554
+ V + + + + CQ
Sbjct: 432 MENVGQQKLYEMVSYCQ 448
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 197/351 (56%), Gaps = 14/351 (3%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L+ +G+ SF+ Q + I VL+ ++ ++V+ TG GKSLC+Q P + + +V+ PL+
Sbjct: 504 LKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVISPLI 563
Query: 252 ALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL--NADFLS 308
+LM DQ+ L + L S+Q + + +++G +V++++PE F N D L
Sbjct: 564 SLMEDQVLQLELSNVPACLLGSAQSKNILGD----VKLGKYRVIYITPE-FCSGNLDLLQ 618
Query: 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368
++ I+L+ VDEAHC+SEW H+FR S+ L + L+ L + ++A++ATA+++
Sbjct: 619 QLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGS--LKTALPLVPVIALSATASSSIRE 676
Query: 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSL-SGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
D++S L + + R NL L V +GN Q+ + V + S I
Sbjct: 677 DIISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYC 736
Query: 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487
S K T+ ++ L +++ ++YH+G+ +R + F ++I+ VVATVAFGMG++
Sbjct: 737 PSRKM--TEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGIN 794
Query: 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538
K D+ VIHY P+ +E Y QEIGRAGRDG S CHL + R+L+
Sbjct: 795 KADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLL 845
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 121/350 (34%), Positives = 189/350 (54%), Gaps = 36/350 (10%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVA 252
L +G+ FR+ Q + ++ VL K +++ TG GKS+CYQ+P+++L +T+VV PL++
Sbjct: 219 LNEFFGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVVVSPLIS 278
Query: 253 LMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGA----IKVLFVSPERFLNADFLS 308
LM DQ+ L + G + + + + I QV I+ +++SPE + L
Sbjct: 279 LMNDQVTTL---VSKGI--DAVKLDGHSTQIEWDQVANNMHRIRFIYMSPEMVTSQKGLE 333
Query: 309 IFTAT-SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367
+ T+ ISL+ +DEAHCVS+W H+FR SY L R+ L ++A+TATAT
Sbjct: 334 LLTSCRKHISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIALTATATVRVR 393
Query: 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427
DV++ L + + + R NL +SV S + +++ F ++ +
Sbjct: 394 DDVIANLRLRKPLITTTSFDRKNLYISVHSSKD--------MAEDLGLFMKTD------E 439
Query: 428 ISGKHFETDLI----SRYLCDN------SISVKS--YHSGIPAKDRSRIQELFCSNKIRV 475
+ G+HF I ++ + D+ I V+S YH+G+ R + F +KI
Sbjct: 440 VKGRHFGGPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITT 499
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
+VATVAFGMG+DK DV VIHY P ++E Y QEIGRAGRDG S C +F
Sbjct: 500 IVATVAFGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVF 549
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 190 bits (482), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 124/360 (34%), Positives = 196/360 (54%), Gaps = 23/360 (6%)
Query: 182 DEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP 241
DEA+ ++L+ + + FR Q AI V+ K+ +++L TG GKSLCYQ+PA++
Sbjct: 95 DEAT-----KILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLAN 149
Query: 242 GLTLVVCPLVALMIDQLRHLPPV-IHGGFLSSSQRPEEVAETIRLI--QVGAIKVLFVSP 298
GL LVV PL++L+ DQ+ L + I L+++ EE I + ++L+V+P
Sbjct: 150 GLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTP 209
Query: 299 ERFLNA----DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC 354
E+ + + L + + L+ +DE HC S+W H+FR Y L ++L+ +
Sbjct: 210 EKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFL--NVLKRQFKGVP 267
Query: 355 ILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVF 414
IL +TATAT+ L DV L I + + R NL+ V + ++E + + +
Sbjct: 268 ILGLTATATSNVLDDVKDMLGIQAALTFRAGFNRSNLKYKV-VQKPGSEDECTEEIAKTI 326
Query: 415 SFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIR 474
+ + I +S E +++ L + I K YH+ + DRS + + S KI+
Sbjct: 327 KRDFAGQTGIIYCLSRNDCEK--VAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQ 384
Query: 475 VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRL 534
V+VATVAFGMG+DK +V VIH+SLP+S+E Y QE GRAGRDG+ + C I Y+RL
Sbjct: 385 VIVATVAFGMGIDKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATC------ILYYRL 438
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 190/345 (55%), Gaps = 11/345 (3%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMILPG 242
A +E L++ +G+ SF+ Q + I VL+ ++ + V+ TG GKSLC+Q P + +
Sbjct: 531 APNEEQVTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGK 590
Query: 243 LTLVVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301
+ LV+ PL++LM DQ+ L I FL S+Q E V I+L G ++++V+PE
Sbjct: 591 IGLVISPLISLMEDQVLQLKMSNIPACFLGSAQ-SENVLTDIKL---GKYRIVYVTPEYC 646
Query: 302 L-NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTA 360
N L A I+L+ VDEAHC+SEW H+FR S+ +L + L+ L + I+A+TA
Sbjct: 647 SGNMGLLQQLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGS--LKTALPMVPIVALTA 704
Query: 361 TATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS 420
TA+++ D++ L + + R NL L V N + ++ + S H
Sbjct: 705 TASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVKTSS-HWEF 763
Query: 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480
+ I+ + T ++ L ++S +YH+G+ R I F ++I+ V+AT+
Sbjct: 764 EGPTIIYCPSRKM-TQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATI 822
Query: 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525
AFGMG++K D+ VIHY P+ +E Y QEIGRAGRDG S CH+
Sbjct: 823 AFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVL 867
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 182/339 (53%), Gaps = 19/339 (5%)
Query: 193 LRLVYGYDSFRDGQLEAIKMVL-DKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLV 251
L+ +G+ SF+ Q + + VL +++ ++V+ TG GKSLCYQ + G+ +V+CPL+
Sbjct: 481 LKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICPLI 540
Query: 252 ALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA-DFLSI 309
+LM DQ+ L I FL S+Q ++ ++ G ++V++++PE L
Sbjct: 541 SLMEDQVLQLEMSNISSCFLGSAQS----KNVLQDVKDGKMRVIYMTPEFCSRGISLLQD 596
Query: 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369
I+L+ +DEAHC+SEW H+FR +Y L SL R NV I+A+TATA+ + D
Sbjct: 597 LDNRYGITLIAIDEAHCISEWGHDFRSAYRSL-GSLKRMLPNVP-IVALTATASPSIRED 654
Query: 370 VMSALEIPLSNLIQKAQLRDNLQLSVSLSGNN-----RQNERSAYVDEVFSFHRSSKHYY 424
+ +L + + + R NL L V+ N RQ + F ++ Y
Sbjct: 655 ITKSLNLHNPQVTCTSFDRPNLYLDVARKTTNISIDLRQFLIKKQQGSGWEFEGATIVYC 714
Query: 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484
+ + + +LI I+ +YH+G+ K R + F ++I VVATVAFGM
Sbjct: 715 PTRKTSEQVTAELIKL-----GIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGM 769
Query: 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCH 523
G++K D+ VIHY P+ +E Y QEIGRAGRDG S CH
Sbjct: 770 GINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCH 808
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 192/361 (53%), Gaps = 25/361 (6%)
Query: 184 ASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243
A ++L LR ++GYD FR Q E I +L ++ ++VLPTG GKS+C+Q+PA++ GL
Sbjct: 2 ADRQSLEEALRRIWGYDHFRYPQGEVIDCLLARRDCLVVLPTGGGKSICFQLPALLGEGL 61
Query: 244 TLVVCPLVALMIDQL-----RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298
TLVV PLVALM DQ+ ++LP LS RPE + + + +K+L++SP
Sbjct: 62 TLVVSPLVALMEDQVQSLRRQNLPAACLHSQLS---RPER-KQVLYQLGQQQLKLLYLSP 117
Query: 299 ERFLNADFLSIFTATSL-ISLVVVDEAHCVSEWSHNFRPSYMR---LRASLLRARLNVEC 354
E L+ ++ + + +++DEAHC+ +W +FRP+Y R LR L R + +
Sbjct: 118 ETLLSEPVWNLLRQPQVKLQGIMLDEAHCLVQWGDSFRPAYRRLGALRRGLGRDKGQIP- 176
Query: 355 ILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNN---RQNERSAYVD 411
+ A TATA ++ L + Q + R L L V + + RQ R +
Sbjct: 177 LAAFTATADRQQQNLIVEGLNLRSPECFQVSPHRPQLHLKVKMVLSEYCRRQQLRRFLLK 236
Query: 412 EVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471
+ + ++ + + +L +++L + ++YH G+ R ++++ + +
Sbjct: 237 HL-------QESGLIYVRTRTMAINL-AQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTG 288
Query: 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531
+I VV T AFG+G+DK D V+HY P L +Y+QE+GRAGRD + + C + + T
Sbjct: 289 QISSVVCTNAFGLGIDKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAECLTLVSEPTG 348
Query: 532 F 532
+
Sbjct: 349 W 349
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 17/225 (7%)
Query: 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245
++ + +LR +G S R Q EA+ + K +++ TG+GKSLC+QIPA++ + +
Sbjct: 153 EKRVNSILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVV 212
Query: 246 VVCPLVALMIDQLRHLP-PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN- 303
V+ PL++LM DQ L + FL S Q + E + +Q G ++++V PE +
Sbjct: 213 VISPLISLMHDQCLKLSRHKVSACFLGSGQLDNCIEE--KAMQ-GMYQIIYVCPETVVRL 269
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARL---NVEC------ 354
L T I+L +DEAHCVS+W H+FRP Y +L S+LR N+E
Sbjct: 270 IKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKL--SVLRENFCASNLEFLEYDVP 327
Query: 355 ILAMTATATTTTLRDVMSALEIPL-SNLIQKAQLRDNLQLSVSLS 398
I+A+TATAT D++ +L + + ++ + R NLQ SV S
Sbjct: 328 IMALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVKHS 372
Score = 99.8 bits (247), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 438 ISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHY 497
I++YLC + +Y++ +P K ++ + F NK++VVVAT+AFGMG+DK++V +IHY
Sbjct: 513 IAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHY 572
Query: 498 SLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAIN--KFLCQV 555
+SLE Y QE GRAGRDG L+ C L+ D R +L+ S E K L
Sbjct: 573 GWLQSLEAYYQEAGRAGRDGELAECVLYAD---LSRAPTLLPSRRSKEQTEQAYKMLSDC 629
Query: 556 FTNGMNS 562
F GMN+
Sbjct: 630 FRYGMNT 636
>sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 OS=Homo sapiens GN=DDX43
PE=2 SV=2
Length = 648
Score = 89.7 bits (221), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 159/341 (46%), Gaps = 54/341 (15%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI-------------LPGLTLVVCPL-- 250
Q +A +VL + V TG GK+LCY +P I PG+ LV+ P
Sbjct: 269 QSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGM-LVLTPTRE 327
Query: 251 VALMID------QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
+AL ++ + L V ++GG R E++ E + + ++ +P R LN
Sbjct: 328 LALQVEGECCKYSYKGLRSVCVYGG----GNRDEQIEELKK-----GVDIIIATPGR-LN 377
Query: 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363
+S F I+ +V+DEA + + F P M++ LL R + + ++ +AT
Sbjct: 378 DLQMSNFVNLKNITYLVLDEADKMLD--MGFEPQIMKI---LLDVRPDRQTVMT-SATWP 431
Query: 364 TTTLRDVMSALEIPLS------NLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH 417
+ R S L+ P+ +L+ + ++ N+ ++ + E+ +++ + F
Sbjct: 432 HSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTT-------EEEKWSHM-QTFLQS 483
Query: 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477
SS I+ +S K L S + N ISV+S H +DR + E F + K+R+++
Sbjct: 484 MSSTDKVIVFVSRKAVADHLSSDLILGN-ISVESLHGDREQRDREKALENFKTGKVRILI 542
Query: 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
AT GLD DV V ++ P ++EEYV IGR GR GR
Sbjct: 543 ATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGR 583
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 150/336 (44%), Gaps = 33/336 (9%)
Query: 213 VLDKKSTMLVLPTGAGKSLCYQIPAMI-----LPG-----LTLVVCPLVALMIDQLRHLP 262
+L++ + + VLPTG GKSL + IPA+I PG +TLV+ P+++L D +
Sbjct: 1384 LLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLR-- 1441
Query: 263 PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLI---SLV 319
V G L S + ++ + ++ E L L F + + + + V
Sbjct: 1442 -VNEKGLLVCSGNWTAFKDVRLTLETQLPDLFILTYESALTNSGLRFFESLATLGRLARV 1500
Query: 320 VVDEAHCVSEWSHNFRPSYMRL-RASLLRARLNVECI-----LAMTATATTTTLRDVMSA 373
V+DEAH + S +R + R R S L A L++ L M A T T V+
Sbjct: 1501 VIDEAHLLLT-SGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTNFYVLRE 1559
Query: 374 LEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHF 433
N+ DN + + L ++ + F R+ K + I +
Sbjct: 1560 TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKD--VEYIHRRLH 1617
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELF--CSNKIRVVVATVAFGMGLDKRDV 491
++DL + V Y + ++R + F + K R+++AT AFG+G++ V
Sbjct: 1618 QSDLFAH------THVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGV 1671
Query: 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
V+HY LP S +YVQE GRAGRDG+ + LF +
Sbjct: 1672 RLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYE 1707
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 153/337 (45%), Gaps = 35/337 (10%)
Query: 213 VLDKKSTMLVLPTGAGKSLCYQIPAMI-----LPG-----LTLVVCPLVALMIDQLRHLP 262
+L++ + + VLPTG GKSL + IPA+I PG +TLV+ P+++L D +
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLR-- 1260
Query: 263 PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFV-SPERFLNADFLSIFTATSLI---SL 318
V G L S + +RL + LF+ + E L L F + + + +
Sbjct: 1261 -VNEKGLLVCSGNWTAFKD-VRLTLETQLPDLFILTYESALTNSGLRFFESLATLGRLAR 1318
Query: 319 VVVDEAHCVSEWSHNFRPSYMRL-RASLLRARLNVECI-----LAMTATATTTTLRDVMS 372
VV+DEAH + S +R + R R S L A L++ L M A T T V+
Sbjct: 1319 VVIDEAHLLLT-SGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTNFYVLR 1377
Query: 373 ALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKH 432
N+ DN + + L ++ + F R+ K + I +
Sbjct: 1378 ETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKD--VEYIHRRL 1435
Query: 433 FETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELF--CSNKIRVVVATVAFGMGLDKRD 490
++DL + V Y + ++R + F + K R+++AT AFG+G++
Sbjct: 1436 HQSDLFAH------THVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMG 1489
Query: 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527
V V+HY LP S +YVQE GRAGRDG+ + LF +
Sbjct: 1490 VRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYE 1526
>sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=FAL1 PE=3 SV=1
Length = 397
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D +++ + DN+ +V S H + KDR I F S + RV+++T + G+D + V
Sbjct: 275 KVDWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFRSGRSRVLISTDVWARGIDVQQVSL 334
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR+GR GR F DDIT R YS +DE +N
Sbjct: 335 VINYDLPPNRENYIHRIGRSGRFGRKGVAINFATNDDITTLRDIEQYYSTQIDEMPVN 392
>sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 OS=Homo sapiens GN=DDX53
PE=1 SV=3
Length = 631
Score = 73.2 bits (178), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 154/343 (44%), Gaps = 58/343 (16%)
Query: 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-------------PGLTLVVCPL-- 250
Q +A ++L ++V TG GK+L Y +P I PG+ LV+ P
Sbjct: 249 QSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGM-LVLTPTRE 307
Query: 251 VALMID------QLRHLPPV-IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303
+AL ++ + L + I+GG + Q E++++ + ++ +P R
Sbjct: 308 LALHVEAECSKYSYKGLKSICIYGGRNRNGQ-IEDISK--------GVDIIIATPGRL-- 356
Query: 304 ADFLSIFTATSL--ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361
+ L + + +L I+ +V+DEA + + F P ++R LL R + + ++ +AT
Sbjct: 357 -NDLQMNNSVNLRSITYLVIDEADKMLD--MEFEP---QIRKILLDVRPDRQTVMT-SAT 409
Query: 362 ATTTTLRDVMSALEIPLS------NLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFS 415
T + +S L+ P+ NL+ ++ N+ ++ + E+ A E F
Sbjct: 410 WPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTT-------EKEKRALTQE-FV 461
Query: 416 FHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475
+ S I+ +S KH DL S + IS +S H D+ R E F S I++
Sbjct: 462 ENMSPNDKVIMFVSQKHIADDLSSDFNI-QGISAESLHGNSEQSDQERAVEDFKSGNIKI 520
Query: 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518
++ T GLD DV V +Y P +++ YV +G GR G+
Sbjct: 521 LITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGK 563
>sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2
SV=1
Length = 412
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 156/384 (40%), Gaps = 52/384 (13%)
Query: 192 LLRLVYGYDSFRDG--QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + Q AIK ++ + + +G GK+ + I +L L + V
Sbjct: 50 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 107
Query: 250 LVALMIDQLRHLPPVIHGGFLSSSQR----------PEEVAETIRLIQVGAIKVLFVSPE 299
AL++ R L I G L+ V E IR + G V+ +P
Sbjct: 108 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPG 166
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCV--SEWSHNFRPSYMRL----RASLLRARLNVE 353
R + T I ++V+DEA + + Y L + L+ A L E
Sbjct: 167 RVFDM-IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE 225
Query: 354 CILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV 413
IL MT T +R ++ E+ L + Q V++ ER E
Sbjct: 226 -ILEMTNKFMTDPIRILVKRDELTLEGI---------KQFFVAV-------ER-----EE 263
Query: 414 FSFHRSSKHYYILQIS------GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ F Y L I+ + D ++ + + + +V S H +P K+R I +
Sbjct: 264 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 323
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F S RV+++T + GLD V +I+Y LP + E Y+ IGR+GR GR F+
Sbjct: 324 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 383
Query: 527 -DDITYFRLRSLMYSDGVDEYAIN 549
DDI R YS +DE +N
Sbjct: 384 NDDIRILRDIEQYYSTQIDEMPMN 407
>sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Macaca fascicularis
GN=EIF4A3 PE=2 SV=3
Length = 411
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 156/384 (40%), Gaps = 52/384 (13%)
Query: 192 LLRLVYGYDSFRDG--QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + Q AIK ++ + + +G GK+ + I +L L + V
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 106
Query: 250 LVALMIDQLRHLPPVIHGGFLSSSQR----------PEEVAETIRLIQVGAIKVLFVSPE 299
AL++ R L I G L+ V E IR + G V+ +P
Sbjct: 107 TQALILAPARELAVQIQKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPG 165
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCV--SEWSHNFRPSYMRL----RASLLRARLNVE 353
R + T I ++V+DEA + + Y L + L+ A L E
Sbjct: 166 RVFDM-IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE 224
Query: 354 CILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV 413
IL MT T +R ++ E+ L + Q V++ ER E
Sbjct: 225 -ILEMTNKFMTDPIRILVKRDELTLEGI---------KQFFVAV-------ER-----EE 262
Query: 414 FSFHRSSKHYYILQIS------GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ F Y L I+ + D ++ + + + +V S H +P K+R I +
Sbjct: 263 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F S RV+++T + GLD V +I+Y LP + E Y+ IGR+GR GR F+
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382
Query: 527 -DDITYFRLRSLMYSDGVDEYAIN 549
DDI R YS +DE +N
Sbjct: 383 NDDIRILRDIEQYYSTQIDEMPMN 406
>sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1
SV=4
Length = 411
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 156/384 (40%), Gaps = 52/384 (13%)
Query: 192 LLRLVYGYDSFRDG--QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + Q AIK ++ + + +G GK+ + I +L L + V
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 106
Query: 250 LVALMIDQLRHLPPVIHGGFLSSSQR----------PEEVAETIRLIQVGAIKVLFVSPE 299
AL++ R L I G L+ V E IR + G V+ +P
Sbjct: 107 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPG 165
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCV--SEWSHNFRPSYMRL----RASLLRARLNVE 353
R + T I ++V+DEA + + Y L + L+ A L E
Sbjct: 166 RVFDM-IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE 224
Query: 354 CILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV 413
IL MT T +R ++ E+ L + Q V++ ER E
Sbjct: 225 -ILEMTNKFMTDPIRILVKRDELTLEGI---------KQFFVAV-------ER-----EE 262
Query: 414 FSFHRSSKHYYILQIS------GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ F Y L I+ + D ++ + + + +V S H +P K+R I +
Sbjct: 263 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F S RV+++T + GLD V +I+Y LP + E Y+ IGR+GR GR F+
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382
Query: 527 -DDITYFRLRSLMYSDGVDEYAIN 549
DDI R YS +DE +N
Sbjct: 383 NDDIRILRDIEQYYSTQIDEMPMN 406
>sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1
PE=3 SV=1
Length = 399
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 105/408 (25%), Positives = 169/408 (41%), Gaps = 43/408 (10%)
Query: 164 RRTASELELVEEAVRAVRDEASDENLGR-LLRLVY--GYDSFRDGQLEAIKMVLDKKSTM 220
RRT LE V D +L LLR +Y GY+S Q AI + + T+
Sbjct: 7 RRTDDRLEFSTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTI 66
Query: 221 LVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIH------GGFLSSSQ 274
+G GK+ + I IL + VV AL++ R L I G +++
Sbjct: 67 AQAQSGTGKTATFSIS--ILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQC 124
Query: 275 RP----EEVAETIRLIQVGAIKVLFVSPERFLNADFLSI-FTATSLISLVVVDEAHCVSE 329
+ E IR + G V+ +P R AD + T I ++V+DEA +
Sbjct: 125 HACIGGTNIGEDIRKLDYGQ-HVVSGTPGRV--ADMIRRRHLRTRHIKMLVLDEADEL-- 179
Query: 330 WSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRD 389
+ FR + L A ++ ++AT L + P+ L+++ +L
Sbjct: 180 LNRGFREQIYDVYRYLPPA----TQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDEL-- 233
Query: 390 NLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQIS------GKHFETDLISRYLC 443
+L G + A E + F Y L I+ + D ++ +
Sbjct: 234 ------TLEGIKQYF--IAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMR 285
Query: 444 DNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESL 503
+ + +V S H +P K+R I + F RV+++T + G+D + V VI+Y LP +
Sbjct: 286 EANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNR 345
Query: 504 EEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
E Y+ IGR+GR GR F+ DD+ R L YS +DE +N
Sbjct: 346 ENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMN 393
>sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus norvegicus GN=Eif4a3
PE=1 SV=1
Length = 411
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 156/384 (40%), Gaps = 52/384 (13%)
Query: 192 LLRLVYGYDSFRDG--QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + Q AIK ++ + + +G GK+ + I +L L + V
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 106
Query: 250 LVALMIDQLRHLPPVIHGGFLSSSQR----------PEEVAETIRLIQVGAIKVLFVSPE 299
AL++ R L I G L+ V E IR + G V+ +P
Sbjct: 107 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPG 165
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCV--SEWSHNFRPSYMRL----RASLLRARLNVE 353
R + T I ++V+DEA + + Y L + L+ A L E
Sbjct: 166 RVFDM-IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE 224
Query: 354 CILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV 413
IL MT T +R ++ E+ L + Q V++ ER E
Sbjct: 225 -ILEMTNKFMTDPIRILVKRDELTLEGI---------KQFFVAV-------ER-----EE 262
Query: 414 FSFHRSSKHYYILQIS------GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ F Y L I+ + D ++ + + + +V S H +P K+R I +
Sbjct: 263 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F S RV+++T + GLD V +I+Y LP + E Y+ IGR+GR GR F+
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382
Query: 527 -DDITYFRLRSLMYSDGVDEYAIN 549
DDI R YS +DE +N
Sbjct: 383 NDDIRILRDIEQYYSTQIDEMPMN 406
>sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2
SV=1
Length = 411
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 156/384 (40%), Gaps = 52/384 (13%)
Query: 192 LLRLVYGYDSFRDG--QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + Q AIK ++ + + +G GK+ + I +L L + V
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 106
Query: 250 LVALMIDQLRHLPPVIHGGFLSSSQR----------PEEVAETIRLIQVGAIKVLFVSPE 299
AL++ R L I G L+ V E IR + G V+ +P
Sbjct: 107 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPG 165
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCV--SEWSHNFRPSYMRL----RASLLRARLNVE 353
R + T I ++V+DEA + + Y L + L+ A L E
Sbjct: 166 RVFDM-IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE 224
Query: 354 CILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV 413
IL MT T +R ++ E+ L + Q V++ ER E
Sbjct: 225 -ILEMTNKFMTDPIRILVKRDELTLEGI---------KQFFVAV-------ER-----EE 262
Query: 414 FSFHRSSKHYYILQIS------GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ F Y L I+ + D ++ + + + +V S H +P K+R I +
Sbjct: 263 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F S RV+++T + GLD V +I+Y LP + E Y+ IGR+GR GR F+
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382
Query: 527 -DDITYFRLRSLMYSDGVDEYAIN 549
DDI R YS +DE +N
Sbjct: 383 NDDIRILRDIEQYYSTQIDEMPMN 406
>sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2
SV=3
Length = 411
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 156/384 (40%), Gaps = 52/384 (13%)
Query: 192 LLRLVYGYDSFRDG--QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + Q AIK ++ + + +G GK+ + I +L L + V
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 106
Query: 250 LVALMIDQLRHLPPVIHGGFLSSSQR----------PEEVAETIRLIQVGAIKVLFVSPE 299
AL++ R L I G L+ V E IR + G V+ +P
Sbjct: 107 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPG 165
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCV--SEWSHNFRPSYMRL----RASLLRARLNVE 353
R + T I ++V+DEA + + Y L + L+ A L E
Sbjct: 166 RVFDM-IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE 224
Query: 354 CILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV 413
IL MT T +R ++ E+ L + Q V++ ER E
Sbjct: 225 -ILEMTNKFMTDPIRILVKRDELTLEGI---------KQFFVAV-------ER-----EE 262
Query: 414 FSFHRSSKHYYILQIS------GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ F Y L I+ + D ++ + + + +V S H +P K+R I +
Sbjct: 263 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 322
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F S RV+++T + GLD V +I+Y LP + E Y+ IGR+GR GR F+
Sbjct: 323 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 382
Query: 527 -DDITYFRLRSLMYSDGVDEYAIN 549
DDI R YS +DE +N
Sbjct: 383 NDDIRILRDIEQYYSTQIDEMPMN 406
>sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taeniopygia guttata
GN=EIF4A3 PE=2 SV=1
Length = 410
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 156/384 (40%), Gaps = 52/384 (13%)
Query: 192 LLRLVYGYDSFRDG--QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249
LLR +Y Y + Q AIK ++ + + +G GK+ + I +L L + V
Sbjct: 48 LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS--VLQCLDIQVRE 105
Query: 250 LVALMIDQLRHLPPVIHGGFLSSSQR----------PEEVAETIRLIQVGAIKVLFVSPE 299
AL++ R L I G L+ V E IR + G V+ +P
Sbjct: 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPG 164
Query: 300 RFLNADFLSIFTATSLISLVVVDEAHCV--SEWSHNFRPSYMRL----RASLLRARLNVE 353
R + T I ++V+DEA + + Y L + L+ A L E
Sbjct: 165 RVFDM-IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHE 223
Query: 354 CILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV 413
IL MT T +R ++ E+ L + Q V++ ER E
Sbjct: 224 -ILEMTNKFMTDPIRILVKRDELTLEGI---------KQFFVAV-------ER-----EE 261
Query: 414 FSFHRSSKHYYILQIS------GKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467
+ F Y L I+ + D ++ + + + +V S H +P K+R I +
Sbjct: 262 WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKE 321
Query: 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL- 526
F S RV+++T + GLD V +I+Y LP + E Y+ IGR+GR GR F+
Sbjct: 322 FRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 381
Query: 527 -DDITYFRLRSLMYSDGVDEYAIN 549
DDI R YS +DE +N
Sbjct: 382 NDDIRILRDIEQYYSTQIDEMPMN 405
>sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2
SV=1
Length = 391
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493
+ D ++ + +N+ +V S H +P K+R I F RV++ T + GLD + V
Sbjct: 269 KVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSL 328
Query: 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL--DDITYFRLRSLMYSDGVDEYAIN 549
VI+Y LP + E Y+ IGR+GR GR F+ DDI R YS +DE +N
Sbjct: 329 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMN 386
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,752,356
Number of Sequences: 539616
Number of extensions: 11821854
Number of successful extensions: 37691
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 35524
Number of HSP's gapped (non-prelim): 2032
length of query: 815
length of database: 191,569,459
effective HSP length: 126
effective length of query: 689
effective length of database: 123,577,843
effective search space: 85145133827
effective search space used: 85145133827
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)