Query 036378
Match_columns 815
No_of_seqs 604 out of 4057
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 12:06:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0514 RecQ Superfamily II DN 100.0 1.7E-74 3.7E-79 644.2 40.4 340 188-536 4-344 (590)
2 PLN03137 ATP-dependent DNA hel 100.0 1.4E-69 3E-74 635.4 45.2 346 183-537 442-795 (1195)
3 TIGR01389 recQ ATP-dependent D 100.0 1.2E-63 2.7E-68 586.2 48.7 337 190-537 2-339 (591)
4 PRK11057 ATP-dependent DNA hel 100.0 2E-63 4.3E-68 582.6 45.4 336 189-535 13-349 (607)
5 TIGR00614 recQ_fam ATP-depende 100.0 1.2E-62 2.6E-67 561.9 48.0 336 192-536 2-340 (470)
6 KOG0351 ATP-dependent DNA heli 100.0 6.6E-64 1.4E-68 589.7 32.6 402 186-596 249-681 (941)
7 KOG0352 ATP-dependent DNA heli 100.0 1.6E-62 3.5E-67 507.4 23.4 346 187-539 5-372 (641)
8 KOG0353 ATP-dependent DNA heli 100.0 8.5E-57 1.9E-61 458.0 24.9 353 183-541 76-479 (695)
9 KOG0331 ATP-dependent RNA heli 100.0 9.4E-57 2E-61 493.0 25.7 345 166-538 92-457 (519)
10 PTZ00110 helicase; Provisional 100.0 4.8E-54 1E-58 496.8 36.6 346 162-538 127-493 (545)
11 KOG0330 ATP-dependent RNA heli 100.0 5.6E-55 1.2E-59 448.6 25.0 347 163-539 59-417 (476)
12 COG0513 SrmB Superfamily II DN 100.0 8.7E-53 1.9E-57 481.8 32.0 344 165-538 29-390 (513)
13 KOG0333 U5 snRNP-like RNA heli 100.0 2.6E-52 5.7E-57 442.4 28.1 345 163-534 243-629 (673)
14 PRK04837 ATP-dependent RNA hel 100.0 5.7E-52 1.2E-56 469.4 32.4 342 165-537 8-370 (423)
15 KOG0328 Predicted ATP-dependen 100.0 1E-52 2.2E-57 414.4 21.2 353 159-538 21-382 (400)
16 PRK10590 ATP-dependent RNA hel 100.0 2.5E-51 5.5E-56 467.3 34.3 341 166-537 2-360 (456)
17 PRK11776 ATP-dependent RNA hel 100.0 2.9E-51 6.2E-56 468.7 34.3 342 165-537 4-357 (460)
18 PRK04537 ATP-dependent RNA hel 100.0 1.1E-50 2.4E-55 470.2 35.8 343 165-537 9-372 (572)
19 PLN00206 DEAD-box ATP-dependen 100.0 5.5E-51 1.2E-55 470.1 32.8 344 162-538 118-484 (518)
20 PRK11634 ATP-dependent RNA hel 100.0 2.5E-50 5.4E-55 469.7 36.9 344 165-539 6-362 (629)
21 KOG0338 ATP-dependent RNA heli 100.0 6.9E-52 1.5E-56 437.4 20.0 350 165-541 181-545 (691)
22 PRK11192 ATP-dependent RNA hel 100.0 3.7E-50 8.1E-55 456.6 35.9 343 166-538 2-361 (434)
23 PRK01297 ATP-dependent RNA hel 100.0 3E-49 6.5E-54 453.3 35.4 344 165-536 87-449 (475)
24 KOG0342 ATP-dependent RNA heli 100.0 1.7E-50 3.7E-55 427.7 22.7 351 160-538 77-446 (543)
25 PTZ00424 helicase 45; Provisio 100.0 1.9E-48 4.2E-53 438.9 33.1 344 164-537 27-382 (401)
26 KOG0343 RNA Helicase [RNA proc 100.0 1.5E-49 3.3E-54 423.0 22.5 338 165-533 69-426 (758)
27 KOG0336 ATP-dependent RNA heli 100.0 1.5E-49 3.3E-54 409.0 20.3 345 163-538 217-581 (629)
28 KOG0326 ATP-dependent RNA heli 100.0 3E-50 6.5E-55 403.0 12.2 350 164-544 84-444 (459)
29 KOG0345 ATP-dependent RNA heli 100.0 5.3E-48 1.1E-52 405.7 27.0 341 166-535 5-370 (567)
30 KOG0348 ATP-dependent RNA heli 100.0 3.5E-48 7.5E-53 411.6 25.4 356 163-538 134-563 (708)
31 KOG0340 ATP-dependent RNA heli 100.0 3.7E-48 8E-53 394.0 23.5 343 165-538 7-370 (442)
32 KOG0335 ATP-dependent RNA heli 100.0 9.5E-49 2.1E-53 422.4 19.8 355 160-538 69-453 (482)
33 KOG0341 DEAD-box protein abstr 100.0 1.7E-48 3.6E-53 398.8 11.1 340 159-529 164-528 (610)
34 TIGR03817 DECH_helic helicase/ 100.0 3.5E-45 7.5E-50 434.6 34.4 339 171-535 20-394 (742)
35 KOG0339 ATP-dependent RNA heli 100.0 5E-46 1.1E-50 392.3 23.5 348 163-536 221-582 (731)
36 KOG0347 RNA helicase [RNA proc 100.0 4.5E-46 9.8E-51 396.6 22.8 354 163-540 179-581 (731)
37 KOG0346 RNA helicase [RNA proc 100.0 1.2E-45 2.6E-50 384.5 24.2 338 165-532 19-413 (569)
38 KOG0332 ATP-dependent RNA heli 100.0 1E-43 2.2E-48 363.5 24.8 337 163-531 88-445 (477)
39 KOG0334 RNA helicase [RNA proc 100.0 1.2E-42 2.6E-47 398.9 22.4 352 161-537 361-728 (997)
40 KOG0327 Translation initiation 100.0 2.5E-42 5.5E-47 357.3 21.3 345 165-538 26-379 (397)
41 PRK02362 ski2-like helicase; P 100.0 4.4E-40 9.5E-45 395.2 41.3 332 166-529 2-397 (737)
42 PRK13767 ATP-dependent helicas 100.0 2E-40 4.2E-45 401.7 36.6 318 198-526 29-395 (876)
43 TIGR00580 mfd transcription-re 100.0 1.8E-40 3.9E-45 397.4 34.9 314 188-529 439-770 (926)
44 KOG4284 DEAD box protein [Tran 100.0 6E-42 1.3E-46 369.9 19.6 345 164-530 24-380 (980)
45 KOG0350 DEAD-box ATP-dependent 100.0 8E-42 1.7E-46 361.2 19.4 334 197-539 155-550 (620)
46 PRK10917 ATP-dependent DNA hel 100.0 1.5E-39 3.2E-44 385.2 38.3 313 188-527 249-587 (681)
47 PRK00254 ski2-like helicase; P 100.0 3.4E-39 7.4E-44 386.6 37.1 337 166-537 2-397 (720)
48 PRK14701 reverse gyrase; Provi 100.0 5.5E-40 1.2E-44 409.5 29.7 332 188-540 67-467 (1638)
49 PRK10689 transcription-repair 100.0 6.4E-39 1.4E-43 392.0 36.9 312 189-528 589-918 (1147)
50 TIGR00643 recG ATP-dependent D 100.0 9E-39 2E-43 376.2 36.1 308 193-526 228-563 (630)
51 KOG0344 ATP-dependent RNA heli 100.0 3.3E-40 7.1E-45 357.8 21.2 342 170-538 141-504 (593)
52 PRK01172 ski2-like helicase; P 100.0 4.5E-38 9.7E-43 375.4 34.0 339 166-538 2-388 (674)
53 KOG0337 ATP-dependent RNA heli 100.0 3E-39 6.4E-44 335.4 15.4 345 165-537 21-376 (529)
54 COG1201 Lhr Lhr-like helicases 100.0 2.7E-37 5.8E-42 357.7 30.7 320 198-528 19-361 (814)
55 PRK09751 putative ATP-dependen 100.0 6.1E-36 1.3E-40 366.9 30.2 297 221-528 1-384 (1490)
56 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.3E-35 5E-40 343.6 28.5 322 190-526 5-388 (844)
57 PRK09401 reverse gyrase; Revie 100.0 8.2E-35 1.8E-39 356.7 30.9 307 188-515 68-430 (1176)
58 PHA02653 RNA helicase NPH-II; 100.0 2.3E-34 4.9E-39 334.1 29.1 304 204-533 167-518 (675)
59 TIGR03158 cas3_cyano CRISPR-as 100.0 1.9E-33 4E-38 309.5 29.1 298 205-514 1-357 (357)
60 TIGR01970 DEAH_box_HrpB ATP-de 100.0 8.9E-34 1.9E-38 336.7 27.0 308 208-537 9-344 (819)
61 PRK11664 ATP-dependent RNA hel 100.0 8.4E-34 1.8E-38 337.8 24.7 306 208-534 12-344 (812)
62 TIGR01587 cas3_core CRISPR-ass 100.0 1.8E-33 3.8E-38 312.2 25.6 299 218-530 1-337 (358)
63 COG1202 Superfamily II helicas 100.0 2.3E-33 4.9E-38 301.0 18.9 340 166-529 195-553 (830)
64 PHA02558 uvsW UvsW helicase; P 100.0 1.9E-32 4.2E-37 314.8 27.6 303 199-527 112-450 (501)
65 KOG0329 ATP-dependent RNA heli 100.0 2.3E-34 5.1E-39 280.6 9.7 300 166-530 43-356 (387)
66 COG1200 RecG RecG-like helicas 100.0 4.9E-32 1.1E-36 302.1 29.4 365 197-593 259-660 (677)
67 PRK05580 primosome assembly pr 100.0 4.1E-32 8.8E-37 320.5 29.9 328 201-539 144-559 (679)
68 PRK12898 secA preprotein trans 100.0 1.6E-32 3.5E-37 313.6 23.9 319 190-530 93-587 (656)
69 PRK09200 preprotein translocas 100.0 8.4E-32 1.8E-36 314.0 30.3 323 190-531 68-543 (790)
70 COG1111 MPH1 ERCC4-like helica 100.0 7.1E-32 1.5E-36 288.9 26.4 321 197-531 11-483 (542)
71 TIGR03714 secA2 accessory Sec 100.0 2.5E-31 5.4E-36 307.0 30.9 327 190-531 60-539 (762)
72 TIGR01054 rgy reverse gyrase. 100.0 1.7E-31 3.8E-36 328.0 29.7 291 189-501 67-409 (1171)
73 COG1205 Distinct helicase fami 100.0 9E-32 2E-36 320.8 25.3 327 197-529 66-422 (851)
74 PRK13766 Hef nuclease; Provisi 100.0 1.9E-30 4.1E-35 315.5 34.3 320 198-531 12-481 (773)
75 TIGR00595 priA primosomal prot 100.0 4.9E-31 1.1E-35 300.8 26.1 306 220-538 1-390 (505)
76 COG1204 Superfamily II helicas 100.0 9.4E-31 2E-35 307.9 27.5 328 197-537 27-417 (766)
77 PRK11131 ATP-dependent RNA hel 100.0 2.5E-30 5.4E-35 312.3 31.2 357 206-600 79-471 (1294)
78 TIGR00963 secA preprotein tran 100.0 5E-30 1.1E-34 294.3 30.5 322 190-531 46-519 (745)
79 COG1197 Mfd Transcription-repa 100.0 2E-30 4.3E-35 304.1 27.3 306 196-529 590-913 (1139)
80 KOG0349 Putative DEAD-box RNA 100.0 3.1E-31 6.8E-36 275.4 15.2 283 243-529 288-615 (725)
81 KOG0952 DNA/RNA helicase MER3/ 100.0 1.7E-29 3.7E-34 287.8 27.0 353 195-559 104-521 (1230)
82 KOG0354 DEAD-box like helicase 100.0 2.1E-29 4.5E-34 285.2 23.9 324 198-535 59-535 (746)
83 TIGR00603 rad25 DNA repair hel 100.0 5.2E-29 1.1E-33 287.9 25.9 310 200-531 254-609 (732)
84 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.4E-28 7.3E-33 295.1 30.7 313 197-535 60-410 (1283)
85 PRK04914 ATP-dependent helicas 100.0 7.2E-27 1.6E-31 279.2 28.5 317 201-527 152-601 (956)
86 COG1061 SSL2 DNA or RNA helica 100.0 9.1E-27 2E-31 262.8 27.4 304 198-521 33-382 (442)
87 PRK09694 helicase Cas3; Provis 99.9 1.4E-25 3E-30 266.8 34.4 310 196-518 281-664 (878)
88 KOG0951 RNA helicase BRR2, DEA 99.9 7.9E-26 1.7E-30 260.6 23.3 337 197-546 305-719 (1674)
89 PRK12906 secA preprotein trans 99.9 9.4E-25 2E-29 253.2 28.2 322 190-530 70-554 (796)
90 COG1198 PriA Primosomal protei 99.9 9.9E-25 2.1E-29 252.0 26.1 329 200-540 197-614 (730)
91 KOG0947 Cytoplasmic exosomal R 99.9 7.7E-25 1.7E-29 247.1 24.2 322 196-540 293-736 (1248)
92 PRK13104 secA preprotein trans 99.9 1.4E-23 3.1E-28 244.3 28.2 326 190-530 72-588 (896)
93 PRK12904 preprotein translocas 99.9 3E-23 6.6E-28 241.6 29.5 322 190-530 71-574 (830)
94 KOG0922 DEAH-box RNA helicase 99.9 3.7E-24 7.9E-29 236.9 19.4 303 208-534 58-395 (674)
95 COG1643 HrpA HrpA-like helicas 99.9 5.9E-24 1.3E-28 249.0 22.1 304 208-533 57-391 (845)
96 PRK11448 hsdR type I restricti 99.9 6.3E-23 1.4E-27 250.9 30.3 306 200-517 412-801 (1123)
97 COG4581 Superfamily II RNA hel 99.9 1.2E-23 2.6E-28 247.5 22.6 310 197-527 116-535 (1041)
98 KOG0948 Nuclear exosomal RNA h 99.9 3.3E-24 7.2E-29 236.5 15.7 320 201-540 129-551 (1041)
99 KOG0924 mRNA splicing factor A 99.9 3.9E-24 8.5E-29 233.5 14.3 302 205-530 360-698 (1042)
100 PRK12899 secA preprotein trans 99.9 3.9E-22 8.5E-27 231.8 29.1 147 168-329 65-229 (970)
101 cd00268 DEADc DEAD-box helicas 99.9 1.5E-22 3.3E-27 206.1 19.0 184 167-375 1-197 (203)
102 COG4098 comFA Superfamily II D 99.9 6.1E-22 1.3E-26 202.2 21.2 302 200-527 96-414 (441)
103 PLN03142 Probable chromatin-re 99.9 3E-21 6.4E-26 231.9 29.3 316 201-529 169-599 (1033)
104 KOG0950 DNA polymerase theta/e 99.9 1.3E-21 2.7E-26 223.4 23.0 332 195-541 217-623 (1008)
105 PRK13107 preprotein translocas 99.9 2.1E-21 4.6E-26 225.5 24.3 109 421-531 448-593 (908)
106 KOG0923 mRNA splicing factor A 99.9 6.3E-22 1.4E-26 216.3 17.2 305 202-531 266-608 (902)
107 KOG0926 DEAH-box RNA helicase 99.9 1.1E-21 2.3E-26 218.0 15.1 307 208-530 263-705 (1172)
108 TIGR00631 uvrb excinuclease AB 99.9 8.3E-20 1.8E-24 213.5 30.6 116 420-536 440-560 (655)
109 PRK05298 excinuclease ABC subu 99.9 4.7E-19 1E-23 208.9 34.4 113 421-534 445-562 (652)
110 PF00270 DEAD: DEAD/DEAH box h 99.8 7.7E-21 1.7E-25 187.4 14.5 156 203-367 1-166 (169)
111 KOG0920 ATP-dependent RNA heli 99.8 5.6E-20 1.2E-24 214.6 18.3 316 202-534 174-549 (924)
112 COG1110 Reverse gyrase [DNA re 99.8 7.7E-19 1.7E-23 201.6 26.5 291 189-501 71-417 (1187)
113 COG1203 CRISPR-associated heli 99.8 1.8E-19 3.9E-24 215.3 22.2 318 202-530 196-551 (733)
114 PRK12900 secA preprotein trans 99.8 2.4E-18 5.2E-23 200.9 24.8 121 409-531 583-713 (1025)
115 PRK12326 preprotein translocas 99.8 4.9E-17 1.1E-21 185.2 29.2 321 190-530 68-548 (764)
116 TIGR00348 hsdR type I site-spe 99.8 2.2E-17 4.8E-22 195.4 24.8 314 185-515 213-633 (667)
117 TIGR01407 dinG_rel DnaQ family 99.8 7.3E-17 1.6E-21 196.9 29.9 173 353-529 596-814 (850)
118 KOG0949 Predicted helicase, DE 99.8 7.9E-18 1.7E-22 191.2 17.7 156 201-365 511-674 (1330)
119 KOG4150 Predicted ATP-dependen 99.8 1.3E-17 2.9E-22 179.3 16.6 332 197-534 282-647 (1034)
120 PRK14873 primosome assembly pr 99.8 7.2E-17 1.6E-21 188.4 23.4 295 225-539 169-548 (665)
121 PRK13103 secA preprotein trans 99.7 1.9E-16 4E-21 184.8 24.3 321 190-530 72-592 (913)
122 COG0556 UvrB Helicase subunit 99.7 4.3E-16 9.4E-21 168.2 24.3 109 420-529 444-557 (663)
123 KOG0385 Chromatin remodeling c 99.7 6.4E-16 1.4E-20 172.5 24.2 318 200-530 166-600 (971)
124 KOG0925 mRNA splicing factor A 99.7 1.1E-16 2.3E-21 170.2 16.4 296 206-530 52-388 (699)
125 PF00271 Helicase_C: Helicase 99.7 5.9E-17 1.3E-21 138.0 9.1 78 440-517 1-78 (78)
126 COG4096 HsdR Type I site-speci 99.7 5.5E-16 1.2E-20 176.2 17.8 297 198-516 162-525 (875)
127 PRK07246 bifunctional ATP-depe 99.7 1.2E-14 2.5E-19 175.3 29.4 322 201-529 245-783 (820)
128 smart00487 DEXDc DEAD-like hel 99.7 8.5E-16 1.9E-20 154.5 15.4 169 197-375 4-183 (201)
129 PRK12903 secA preprotein trans 99.7 9.8E-15 2.1E-19 168.7 25.5 321 190-530 68-540 (925)
130 cd00079 HELICc Helicase superf 99.7 8.3E-16 1.8E-20 144.4 13.0 105 421-525 27-131 (131)
131 CHL00122 secA preprotein trans 99.6 1.4E-13 3.1E-18 160.2 25.6 130 190-328 66-209 (870)
132 KOG0384 Chromodomain-helicase 99.6 5.7E-14 1.2E-18 164.3 21.1 318 200-530 369-812 (1373)
133 PRK08074 bifunctional ATP-depe 99.6 9.3E-13 2E-17 161.8 30.7 109 421-529 751-893 (928)
134 KOG0387 Transcription-coupled 99.6 1.7E-13 3.7E-18 154.2 21.5 318 201-531 205-660 (923)
135 KOG0951 RNA helicase BRR2, DEA 99.6 3.4E-14 7.3E-19 165.6 16.2 340 199-558 1141-1523(1674)
136 PF04851 ResIII: Type III rest 99.5 1.3E-14 2.7E-19 144.8 9.4 150 201-364 3-184 (184)
137 TIGR03117 cas_csf4 CRISPR-asso 99.5 3.7E-12 8.1E-17 147.2 29.8 173 354-529 373-616 (636)
138 KOG0953 Mitochondrial RNA heli 99.5 1.3E-13 2.9E-18 149.5 16.5 277 216-539 191-486 (700)
139 smart00490 HELICc helicase sup 99.5 3.1E-14 6.7E-19 121.8 9.4 81 437-517 2-82 (82)
140 KOG0390 DNA repair protein, SN 99.5 1.6E-12 3.6E-17 150.3 26.3 311 201-525 238-701 (776)
141 PRK12902 secA preprotein trans 99.5 4.1E-12 8.9E-17 147.9 28.1 130 190-328 75-218 (939)
142 COG4889 Predicted helicase [Ge 99.5 2.3E-13 4.9E-18 153.4 15.6 321 200-525 160-584 (1518)
143 KOG1123 RNA polymerase II tran 99.5 1.1E-13 2.5E-18 147.8 11.5 305 200-530 301-654 (776)
144 PRK11747 dinG ATP-dependent DN 99.5 5.8E-11 1.3E-15 141.6 32.7 115 410-529 524-674 (697)
145 COG1199 DinG Rad3-related DNA 99.5 2.7E-11 5.9E-16 145.2 29.6 113 411-527 469-615 (654)
146 KOG0389 SNF2 family DNA-depend 99.4 2E-11 4.3E-16 137.6 23.6 321 201-532 399-891 (941)
147 cd00046 DEXDc DEAD-like helica 99.4 1.3E-12 2.9E-17 123.3 10.1 135 217-362 1-144 (144)
148 KOG1000 Chromatin remodeling p 99.4 5.2E-12 1.1E-16 135.3 15.3 313 199-526 196-598 (689)
149 PRK12901 secA preprotein trans 99.3 1E-10 2.2E-15 137.6 22.3 108 421-530 627-742 (1112)
150 TIGR00604 rad3 DNA repair heli 99.3 6E-10 1.3E-14 134.0 28.8 68 196-263 5-82 (705)
151 KOG0386 Chromatin remodeling c 99.3 5.5E-11 1.2E-15 137.2 17.7 315 200-526 393-833 (1157)
152 KOG0392 SNF2 family DNA-depend 99.3 2.8E-10 6.1E-15 133.4 22.6 315 201-530 975-1455(1549)
153 TIGR02562 cas3_yersinia CRISPR 99.2 9.8E-10 2.1E-14 130.2 24.7 91 426-519 760-882 (1110)
154 KOG0351 ATP-dependent DNA heli 99.1 2.2E-12 4.8E-17 154.2 -4.5 341 424-800 306-704 (941)
155 KOG1002 Nucleotide excision re 99.1 4.7E-09 1E-13 112.8 17.1 108 422-529 638-749 (791)
156 PF02399 Herpes_ori_bp: Origin 99.0 2.1E-08 4.7E-13 116.2 21.6 290 217-529 50-388 (824)
157 COG0653 SecA Preprotein transl 99.0 1.6E-08 3.5E-13 118.0 18.9 321 191-530 71-546 (822)
158 KOG4439 RNA polymerase II tran 99.0 3.8E-09 8.3E-14 118.0 12.6 90 436-525 760-852 (901)
159 PF06862 DUF1253: Protein of u 98.9 1.5E-07 3.2E-12 104.2 23.3 298 241-538 37-424 (442)
160 COG0553 HepA Superfamily II DN 98.9 7.8E-08 1.7E-12 119.7 21.4 107 424-530 713-823 (866)
161 KOG0388 SNF2 family DNA-depend 98.9 5.3E-08 1.2E-12 108.7 17.1 110 421-530 1043-1155(1185)
162 PF07652 Flavi_DEAD: Flaviviru 98.9 7.9E-09 1.7E-13 96.0 8.9 134 215-366 3-140 (148)
163 smart00488 DEXDc2 DEAD-like he 98.8 2.6E-08 5.6E-13 106.6 12.5 66 197-263 5-83 (289)
164 smart00489 DEXDc3 DEAD-like he 98.8 2.6E-08 5.6E-13 106.6 12.5 66 197-263 5-83 (289)
165 PF00176 SNF2_N: SNF2 family N 98.8 4.7E-09 1E-13 113.3 5.3 157 205-376 1-186 (299)
166 COG0514 RecQ Superfamily II DN 98.7 3.1E-09 6.8E-14 120.7 2.5 349 421-807 56-444 (590)
167 KOG0921 Dosage compensation co 98.7 2.5E-08 5.4E-13 114.0 9.3 316 207-537 384-782 (1282)
168 COG0610 Type I site-specific r 98.7 1E-06 2.3E-11 108.3 20.7 330 183-527 220-651 (962)
169 KOG0952 DNA/RNA helicase MER3/ 98.6 6.3E-09 1.4E-13 121.2 -1.6 228 201-441 927-1172(1230)
170 KOG2340 Uncharacterized conser 98.5 2E-06 4.4E-11 93.9 15.8 332 200-538 215-677 (698)
171 PF07517 SecA_DEAD: SecA DEAD- 98.5 1E-06 2.2E-11 92.0 12.6 129 191-328 68-210 (266)
172 KOG1015 Transcription regulato 98.5 6.3E-06 1.4E-10 95.2 19.4 104 422-525 1142-1271(1567)
173 KOG0352 ATP-dependent DNA heli 98.3 1E-07 2.2E-12 101.1 -0.2 298 420-757 59-420 (641)
174 PF13086 AAA_11: AAA domain; P 98.2 1.3E-05 2.8E-10 82.9 11.8 63 201-263 1-75 (236)
175 PRK15483 type III restriction- 98.2 1.1E-05 2.3E-10 96.9 11.8 45 472-516 501-545 (986)
176 KOG0353 ATP-dependent DNA heli 98.1 3.4E-07 7.3E-12 95.6 -1.0 353 418-808 130-587 (695)
177 TIGR00596 rad1 DNA repair prot 97.9 0.00019 4.1E-09 86.3 15.7 79 291-376 8-91 (814)
178 KOG0391 SNF2 family DNA-depend 97.9 4.1E-05 9E-10 90.3 9.1 164 201-377 615-790 (1958)
179 PF13604 AAA_30: AAA domain; P 97.7 0.0002 4.4E-09 72.3 10.1 60 201-260 1-65 (196)
180 PF13307 Helicase_C_2: Helicas 97.6 0.00024 5.2E-09 69.8 8.6 105 422-528 9-149 (167)
181 PLN03137 ATP-dependent DNA hel 97.5 5.5E-05 1.2E-09 92.0 3.9 353 422-806 500-912 (1195)
182 PF12340 DUF3638: Protein of u 97.4 0.001 2.2E-08 67.6 10.4 127 200-329 22-186 (229)
183 PF02562 PhoH: PhoH-like prote 97.3 0.00057 1.2E-08 68.7 7.8 53 201-253 4-61 (205)
184 KOG0391 SNF2 family DNA-depend 97.3 0.0013 2.9E-08 78.2 11.1 120 411-530 1263-1388(1958)
185 PRK10875 recD exonuclease V su 97.2 0.0026 5.7E-08 74.8 13.1 164 187-373 137-319 (615)
186 PRK10536 hypothetical protein; 97.2 0.004 8.7E-08 64.5 12.1 57 197-253 55-116 (262)
187 KOG1803 DNA helicase [Replicat 97.2 0.0012 2.6E-08 74.4 8.9 63 200-262 184-250 (649)
188 TIGR01447 recD exodeoxyribonuc 97.2 0.002 4.4E-08 75.5 11.2 148 203-373 147-313 (586)
189 TIGR00376 DNA helicase, putati 97.2 0.0034 7.3E-08 74.7 12.9 64 200-263 156-223 (637)
190 PF13245 AAA_19: Part of AAA d 97.2 0.001 2.2E-08 55.9 6.1 53 209-261 2-62 (76)
191 KOG1802 RNA helicase nonsense 97.1 0.0015 3.2E-08 73.9 8.6 75 197-271 406-485 (935)
192 TIGR01389 recQ ATP-dependent D 97.1 2E-05 4.3E-10 93.5 -6.8 351 421-805 52-436 (591)
193 PF09848 DUF2075: Uncharacteri 97.0 0.0009 2E-08 74.1 5.9 90 218-329 3-97 (352)
194 PF13872 AAA_34: P-loop contai 96.9 0.0014 3E-08 69.0 6.1 157 201-365 37-223 (303)
195 TIGR01448 recD_rel helicase, p 96.9 0.0075 1.6E-07 72.9 12.7 62 197-259 320-386 (720)
196 PRK06526 transposase; Provisio 96.9 0.0067 1.4E-07 63.7 10.7 22 213-234 95-116 (254)
197 PRK08181 transposase; Validate 96.8 0.016 3.5E-07 61.2 12.6 56 202-257 88-149 (269)
198 COG3587 Restriction endonuclea 96.7 0.0025 5.4E-08 74.4 6.4 67 471-537 482-561 (985)
199 KOG1805 DNA replication helica 96.6 0.011 2.5E-07 70.0 10.6 122 201-329 669-810 (1100)
200 smart00492 HELICc3 helicase su 96.6 0.019 4.1E-07 54.5 10.4 67 435-501 4-79 (141)
201 smart00491 HELICc2 helicase su 96.4 0.019 4.2E-07 54.5 9.3 93 435-527 4-137 (142)
202 PRK12723 flagellar biosynthesi 96.4 0.042 9.1E-07 61.1 13.2 58 313-375 252-310 (388)
203 cd00009 AAA The AAA+ (ATPases 96.3 0.024 5.2E-07 53.2 9.6 21 216-236 19-39 (151)
204 PRK14722 flhF flagellar biosyn 96.2 0.1 2.2E-06 57.6 14.8 57 313-374 213-269 (374)
205 PF00448 SRP54: SRP54-type pro 96.2 0.041 8.9E-07 55.4 10.9 56 314-374 82-137 (196)
206 TIGR02768 TraA_Ti Ti-type conj 96.2 0.034 7.3E-07 67.6 12.1 59 200-258 351-413 (744)
207 PRK12377 putative replication 96.1 0.06 1.3E-06 56.2 12.2 57 204-260 81-147 (248)
208 PF13401 AAA_22: AAA domain; P 96.1 0.0094 2E-07 55.5 5.6 21 216-236 4-24 (131)
209 PRK13889 conjugal transfer rel 96.0 0.04 8.7E-07 68.1 11.9 58 200-257 345-406 (988)
210 PRK11057 ATP-dependent DNA hel 96.0 0.00072 1.6E-08 80.3 -3.0 351 422-807 65-449 (607)
211 PF01695 IstB_IS21: IstB-like 96.0 0.022 4.7E-07 56.5 7.9 44 215-258 46-91 (178)
212 PRK07952 DNA replication prote 96.0 0.075 1.6E-06 55.4 11.9 54 203-256 78-141 (244)
213 KOG1132 Helicase of the DEAD s 96.0 0.021 4.6E-07 67.2 8.5 38 201-238 21-62 (945)
214 PF05970 PIF1: PIF1-like helic 95.9 0.017 3.7E-07 64.2 7.4 56 201-256 1-65 (364)
215 COG1875 NYN ribonuclease and A 95.9 0.046 9.9E-07 58.7 9.8 61 195-255 222-290 (436)
216 PRK05703 flhF flagellar biosyn 95.9 0.26 5.7E-06 55.8 16.7 58 313-375 297-355 (424)
217 PRK06921 hypothetical protein; 95.8 0.24 5.1E-06 52.5 15.1 41 216-256 117-160 (266)
218 PRK05642 DNA replication initi 95.8 0.051 1.1E-06 56.5 9.8 48 313-365 95-142 (234)
219 PRK14974 cell division protein 95.8 0.092 2E-06 57.3 12.0 55 314-373 221-275 (336)
220 KOG1131 RNA polymerase II tran 95.7 0.054 1.2E-06 60.2 9.9 42 196-237 11-56 (755)
221 TIGR00614 recQ_fam ATP-depende 95.7 0.0012 2.5E-08 76.2 -2.9 351 422-807 51-455 (470)
222 PRK08727 hypothetical protein; 95.7 0.085 1.8E-06 54.8 11.2 18 313-330 91-108 (233)
223 PF05127 Helicase_RecD: Helica 95.7 0.012 2.6E-07 57.8 4.5 99 220-328 1-103 (177)
224 PRK08084 DNA replication initi 95.7 0.051 1.1E-06 56.5 9.3 19 216-234 45-63 (235)
225 COG3421 Uncharacterized protei 95.7 0.068 1.5E-06 60.5 10.5 108 221-329 2-126 (812)
226 PRK11889 flhF flagellar biosyn 95.6 0.21 4.4E-06 55.2 13.9 128 217-375 242-375 (436)
227 PF00580 UvrD-helicase: UvrD/R 95.6 0.017 3.6E-07 62.6 5.6 117 202-325 1-125 (315)
228 PRK04296 thymidine kinase; Pro 95.6 0.033 7.1E-07 55.9 7.3 34 216-249 2-38 (190)
229 COG1419 FlhF Flagellar GTP-bin 95.5 0.24 5.2E-06 54.6 13.9 129 216-376 203-337 (407)
230 KOG0989 Replication factor C, 95.5 0.041 8.8E-07 57.7 7.5 26 216-241 57-82 (346)
231 smart00382 AAA ATPases associa 95.4 0.035 7.6E-07 51.5 6.6 39 216-254 2-43 (148)
232 COG1484 DnaC DNA replication p 95.3 0.05 1.1E-06 57.2 7.9 67 197-263 79-154 (254)
233 PRK06835 DNA replication prote 95.3 0.16 3.5E-06 55.4 11.9 42 216-257 183-226 (329)
234 TIGR02688 conserved hypothetic 95.2 0.15 3.3E-06 56.6 11.2 63 172-234 158-227 (449)
235 PRK06893 DNA replication initi 95.2 0.12 2.6E-06 53.5 10.1 50 313-367 89-139 (229)
236 PRK13826 Dtr system oriT relax 95.1 0.22 4.7E-06 62.2 13.5 59 200-258 380-442 (1102)
237 PRK08116 hypothetical protein; 95.1 0.56 1.2E-05 49.8 14.9 42 218-259 116-159 (268)
238 TIGR02760 TraI_TIGR conjugativ 95.0 1.8 3.9E-05 58.2 22.5 234 201-472 429-686 (1960)
239 PF13871 Helicase_C_4: Helicas 95.0 0.059 1.3E-06 56.7 7.0 58 463-520 52-117 (278)
240 PRK14956 DNA polymerase III su 94.9 0.23 5E-06 56.4 11.9 22 218-239 42-63 (484)
241 PTZ00112 origin recognition co 94.8 0.38 8.2E-06 57.8 13.5 33 202-234 759-799 (1164)
242 PRK00149 dnaA chromosomal repl 94.7 0.2 4.2E-06 57.6 11.2 25 646-670 404-429 (450)
243 PRK06731 flhF flagellar biosyn 94.7 0.71 1.5E-05 48.9 14.4 128 216-375 75-209 (270)
244 TIGR03420 DnaA_homol_Hda DnaA 94.7 0.14 3.1E-06 52.6 9.0 19 216-234 38-56 (226)
245 PF00308 Bac_DnaA: Bacterial d 94.6 0.16 3.5E-06 52.2 9.2 49 313-365 95-143 (219)
246 PF14617 CMS1: U3-containing 9 94.6 0.043 9.2E-07 57.0 4.8 85 241-326 126-212 (252)
247 PF00004 AAA: ATPase family as 94.5 0.14 2.9E-06 47.5 7.7 22 219-240 1-22 (132)
248 PRK10917 ATP-dependent DNA hel 94.4 0.16 3.5E-06 61.3 10.0 77 420-496 308-389 (681)
249 PRK14964 DNA polymerase III su 94.4 0.54 1.2E-05 54.0 13.4 22 217-238 36-57 (491)
250 PF05621 TniB: Bacterial TniB 94.1 0.21 4.5E-06 53.1 8.6 28 314-341 144-171 (302)
251 COG2256 MGS1 ATPase related to 94.0 0.24 5.2E-06 54.0 9.1 26 218-243 50-75 (436)
252 PRK03992 proteasome-activating 94.0 0.61 1.3E-05 52.4 12.9 60 165-238 128-187 (389)
253 KOG1001 Helicase-like transcri 94.0 0.12 2.6E-06 61.4 7.4 140 219-376 155-306 (674)
254 cd01120 RecA-like_NTPases RecA 94.0 0.38 8.2E-06 46.1 9.8 35 219-253 2-39 (165)
255 TIGR00362 DnaA chromosomal rep 93.9 0.32 6.8E-06 55.1 10.4 18 217-234 137-154 (405)
256 COG2805 PilT Tfp pilus assembl 93.9 0.28 6.1E-06 51.5 8.9 38 163-232 104-141 (353)
257 PRK10416 signal recognition pa 93.9 0.6 1.3E-05 50.8 12.0 59 314-374 195-256 (318)
258 PRK06645 DNA polymerase III su 93.8 0.74 1.6E-05 53.2 13.3 21 218-238 45-65 (507)
259 PRK12727 flagellar biosynthesi 93.8 2.7 5.9E-05 48.4 17.4 56 313-374 426-481 (559)
260 PRK09183 transposase/IS protei 93.8 0.37 8.1E-06 50.8 10.1 42 213-255 99-143 (259)
261 PRK14723 flhF flagellar biosyn 93.8 1.3 2.8E-05 53.4 15.4 58 313-375 261-318 (767)
262 KOG0741 AAA+-type ATPase [Post 93.7 0.37 7.9E-06 54.2 9.8 54 314-367 597-654 (744)
263 PRK14087 dnaA chromosomal repl 93.7 0.41 8.9E-06 54.7 10.8 16 313-328 204-219 (450)
264 KOG0383 Predicted helicase [Ge 93.6 0.016 3.5E-07 67.9 -0.6 63 422-485 631-696 (696)
265 PF13173 AAA_14: AAA domain 93.6 0.36 7.9E-06 44.9 8.6 17 216-232 2-18 (128)
266 PRK12422 chromosomal replicati 93.6 0.47 1E-05 54.1 11.1 17 313-329 200-216 (445)
267 COG1200 RecG RecG-like helicas 93.5 0.28 6.1E-06 57.1 8.9 84 413-496 302-390 (677)
268 PRK14958 DNA polymerase III su 93.4 0.79 1.7E-05 53.2 12.7 21 218-238 40-60 (509)
269 TIGR00643 recG ATP-dependent D 93.4 0.3 6.5E-06 58.5 9.6 76 421-496 283-363 (630)
270 TIGR00064 ftsY signal recognit 93.4 1.1 2.4E-05 47.5 12.8 45 217-261 73-122 (272)
271 COG1444 Predicted P-loop ATPas 93.2 0.45 9.8E-06 56.6 10.3 163 205-393 218-393 (758)
272 PRK14088 dnaA chromosomal repl 93.2 0.45 9.7E-06 54.3 10.1 25 646-670 389-413 (440)
273 COG1110 Reverse gyrase [DNA re 93.2 0.23 5E-06 59.8 7.8 69 415-483 118-192 (1187)
274 cd01124 KaiC KaiC is a circadi 93.2 0.73 1.6E-05 45.6 10.6 43 219-262 2-47 (187)
275 PRK10919 ATP-dependent DNA hel 93.1 0.15 3.3E-06 61.4 6.5 104 201-326 2-113 (672)
276 PRK07764 DNA polymerase III su 93.0 0.87 1.9E-05 55.8 12.7 21 218-238 39-59 (824)
277 PRK00771 signal recognition pa 93.0 0.95 2.1E-05 51.3 12.2 52 314-370 174-225 (437)
278 PRK09111 DNA polymerase III su 92.9 1.3 2.8E-05 52.5 13.5 21 218-238 48-68 (598)
279 PRK07003 DNA polymerase III su 92.9 0.79 1.7E-05 54.7 11.6 20 218-237 40-59 (830)
280 PRK14721 flhF flagellar biosyn 92.9 0.89 1.9E-05 51.2 11.6 57 313-375 267-324 (420)
281 PRK05896 DNA polymerase III su 92.9 1.2 2.6E-05 52.2 12.9 21 218-238 40-60 (605)
282 TIGR02880 cbbX_cfxQ probable R 92.9 0.79 1.7E-05 49.1 10.9 19 216-234 58-76 (284)
283 PRK13342 recombination factor 92.8 0.64 1.4E-05 52.7 10.6 21 218-238 38-58 (413)
284 PRK14960 DNA polymerase III su 92.8 0.82 1.8E-05 53.9 11.4 22 218-239 39-60 (702)
285 PRK00411 cdc6 cell division co 92.8 0.89 1.9E-05 51.1 11.8 31 647-677 325-358 (394)
286 PRK12323 DNA polymerase III su 92.8 0.32 7E-06 57.0 8.1 20 218-237 40-59 (700)
287 PRK14949 DNA polymerase III su 92.8 0.88 1.9E-05 55.3 11.9 21 219-239 41-61 (944)
288 TIGR00580 mfd transcription-re 92.8 0.73 1.6E-05 57.2 11.7 119 202-327 585-742 (926)
289 cd01122 GP4d_helicase GP4d_hel 92.7 0.55 1.2E-05 49.8 9.5 112 214-329 28-154 (271)
290 TIGR02881 spore_V_K stage V sp 92.7 0.61 1.3E-05 49.3 9.8 20 217-236 43-62 (261)
291 PRK14086 dnaA chromosomal repl 92.7 0.59 1.3E-05 54.8 10.1 25 646-670 571-595 (617)
292 PHA02533 17 large terminase pr 92.5 0.28 6.1E-06 57.1 7.3 63 201-263 59-126 (534)
293 PF12793 SgrR_N: Sugar transpo 92.5 1.5 3.2E-05 40.0 10.5 91 640-755 15-110 (115)
294 PRK08691 DNA polymerase III su 92.4 1.1 2.5E-05 53.1 12.1 21 218-238 40-60 (709)
295 CHL00181 cbbX CbbX; Provisiona 92.4 1 2.2E-05 48.3 10.9 22 216-237 59-80 (287)
296 PRK05580 primosome assembly pr 92.3 0.85 1.8E-05 55.0 11.4 76 422-498 190-266 (679)
297 PRK14712 conjugal transfer nic 92.2 0.46 9.9E-06 61.4 9.1 58 201-258 835-901 (1623)
298 TIGR01075 uvrD DNA helicase II 92.1 0.25 5.4E-06 60.2 6.6 104 200-326 3-114 (715)
299 PRK08939 primosomal protein Dn 92.0 1.5 3.2E-05 47.5 11.7 17 216-232 156-172 (306)
300 TIGR00595 priA primosomal prot 92.0 0.92 2E-05 52.7 10.7 77 421-498 24-101 (505)
301 PRK14962 DNA polymerase III su 91.9 1.4 3E-05 50.7 11.9 20 218-237 38-57 (472)
302 TIGR02782 TrbB_P P-type conjug 91.9 0.88 1.9E-05 49.1 9.7 53 202-254 117-175 (299)
303 PRK14951 DNA polymerase III su 91.9 1.4 3E-05 52.1 12.0 19 219-237 41-59 (618)
304 PRK08903 DnaA regulatory inact 91.8 0.94 2E-05 46.7 9.7 17 216-232 42-58 (227)
305 PRK14952 DNA polymerase III su 91.7 2 4.3E-05 50.7 13.1 20 219-238 38-57 (584)
306 TIGR02760 TraI_TIGR conjugativ 91.7 0.72 1.6E-05 61.9 10.6 59 200-258 1018-1085(1960)
307 PRK11773 uvrD DNA-dependent he 91.7 0.26 5.7E-06 60.0 6.2 104 200-326 8-119 (721)
308 PF05876 Terminase_GpA: Phage 91.7 0.24 5.2E-06 58.1 5.6 63 201-263 16-85 (557)
309 PRK04195 replication factor C 91.7 1.1 2.3E-05 52.0 10.9 30 216-245 39-68 (482)
310 COG4962 CpaF Flp pilus assembl 91.6 0.39 8.4E-06 51.7 6.4 61 197-257 153-216 (355)
311 PRK11054 helD DNA helicase IV; 91.6 0.5 1.1E-05 56.8 8.2 100 200-324 195-301 (684)
312 TIGR01074 rep ATP-dependent DN 91.6 0.37 8E-06 58.3 7.3 104 201-326 1-112 (664)
313 TIGR02928 orc1/cdc6 family rep 91.5 0.77 1.7E-05 51.0 9.3 28 650-677 320-350 (365)
314 PRK13341 recombination factor 91.5 0.77 1.7E-05 55.5 9.7 20 218-237 54-73 (725)
315 cd03115 SRP The signal recogni 91.5 4.2 9.1E-05 39.8 13.5 30 219-248 3-35 (173)
316 PRK13709 conjugal transfer nic 91.5 0.77 1.7E-05 60.2 10.2 58 201-258 967-1033(1747)
317 PRK07994 DNA polymerase III su 91.5 0.9 2E-05 53.9 10.0 20 219-238 41-60 (647)
318 TIGR03689 pup_AAA proteasome A 91.5 1.4 3.1E-05 50.8 11.4 21 216-236 216-236 (512)
319 KOG0298 DEAD box-containing he 91.4 0.18 3.8E-06 61.9 4.1 140 216-373 374-560 (1394)
320 PRK12726 flagellar biosynthesi 91.4 3.1 6.7E-05 46.0 13.2 20 216-235 206-225 (407)
321 PRK10689 transcription-repair 91.3 0.87 1.9E-05 57.9 10.2 95 240-347 808-905 (1147)
322 CHL00176 ftsH cell division pr 91.3 2.2 4.7E-05 51.0 12.9 23 216-238 216-238 (638)
323 PRK06266 transcription initiat 91.3 6.5 0.00014 38.9 14.3 44 627-677 26-69 (178)
324 PF05872 DUF853: Bacterial pro 91.2 0.45 9.8E-06 52.9 6.6 30 209-238 12-41 (502)
325 PRK14969 DNA polymerase III su 91.2 1.6 3.4E-05 51.1 11.5 21 218-238 40-60 (527)
326 TIGR01243 CDC48 AAA family ATP 91.1 2.4 5.1E-05 52.0 13.5 32 216-247 487-518 (733)
327 TIGR03015 pepcterm_ATPase puta 91.0 3.3 7.1E-05 43.7 13.1 35 203-237 25-64 (269)
328 PRK14961 DNA polymerase III su 90.8 2 4.3E-05 47.8 11.5 19 219-237 41-59 (363)
329 PRK13833 conjugal transfer pro 90.7 0.5 1.1E-05 51.3 6.4 53 202-254 129-187 (323)
330 PHA03368 DNA packaging termina 90.7 1.7 3.7E-05 51.0 10.8 172 179-374 221-402 (738)
331 PTZ00454 26S protease regulato 90.6 4.5 9.7E-05 45.5 14.1 62 164-239 141-202 (398)
332 PHA03333 putative ATPase subun 90.6 1 2.2E-05 52.9 9.0 58 208-265 179-240 (752)
333 PRK14963 DNA polymerase III su 90.5 2 4.2E-05 49.9 11.4 19 219-237 39-57 (504)
334 PF06745 KaiC: KaiC; InterPro 90.5 2.4 5.1E-05 43.6 11.0 96 215-327 18-127 (226)
335 PRK13894 conjugal transfer ATP 90.4 1.5 3.3E-05 47.6 9.9 53 202-254 133-191 (319)
336 cd01121 Sms Sms (bacterial rad 90.4 1.9 4.1E-05 47.9 10.7 35 216-250 82-119 (372)
337 TIGR01242 26Sp45 26S proteasom 90.2 2.9 6.2E-05 46.5 12.2 25 216-240 156-180 (364)
338 TIGR01243 CDC48 AAA family ATP 90.2 2.2 4.8E-05 52.2 12.2 60 164-237 174-233 (733)
339 TIGR01425 SRP54_euk signal rec 90.2 3.7 7.9E-05 46.4 12.8 24 647-670 402-425 (429)
340 COG0556 UvrB Helicase subunit 90.2 2.4 5.2E-05 48.0 11.0 121 240-372 445-567 (663)
341 COG1474 CDC6 Cdc6-related prot 90.2 4.4 9.5E-05 45.0 13.3 17 218-234 44-60 (366)
342 PRK14873 primosome assembly pr 90.1 2 4.3E-05 51.5 11.2 77 421-498 187-265 (665)
343 PF13177 DNA_pol3_delta2: DNA 89.9 1.3 2.9E-05 43.0 8.1 48 315-370 102-149 (162)
344 PRK06995 flhF flagellar biosyn 89.8 2.8 6E-05 48.1 11.6 56 313-375 332-389 (484)
345 PLN03025 replication factor C 89.7 2.5 5.4E-05 46.1 11.0 21 217-237 35-55 (319)
346 PRK12402 replication factor C 89.7 3.6 7.7E-05 45.0 12.4 20 218-237 38-57 (337)
347 KOG2028 ATPase related to the 89.7 0.85 1.8E-05 49.1 6.8 47 191-238 135-184 (554)
348 PRK06620 hypothetical protein; 89.7 1.2 2.5E-05 45.7 7.8 18 217-234 45-62 (214)
349 COG1219 ClpX ATP-dependent pro 89.5 0.23 5.1E-06 52.4 2.5 24 216-239 97-120 (408)
350 cd00984 DnaB_C DnaB helicase C 89.5 5 0.00011 41.6 12.7 43 215-257 12-61 (242)
351 TIGR00631 uvrb excinuclease AB 89.4 2 4.3E-05 51.5 10.5 121 241-372 442-563 (655)
352 PRK14950 DNA polymerase III su 89.4 2.5 5.3E-05 50.3 11.3 20 218-237 40-59 (585)
353 TIGR01073 pcrA ATP-dependent D 89.3 0.55 1.2E-05 57.4 6.1 103 200-325 3-113 (726)
354 KOG1133 Helicase of the DEAD s 89.3 6.6 0.00014 45.9 13.9 109 415-527 623-778 (821)
355 PHA00729 NTP-binding motif con 89.3 2.8 6.1E-05 43.0 10.1 16 218-233 19-34 (226)
356 PRK04537 ATP-dependent RNA hel 89.1 2.3 5E-05 50.3 10.9 77 241-324 257-334 (572)
357 TIGR00635 ruvB Holliday juncti 89.0 0.93 2E-05 49.0 6.9 30 645-674 256-286 (305)
358 PF03354 Terminase_1: Phage Te 88.9 1.3 2.9E-05 51.2 8.5 63 204-266 1-79 (477)
359 KOG0344 ATP-dependent RNA heli 88.9 6.5 0.00014 45.1 13.4 94 225-325 366-466 (593)
360 cd03239 ABC_SMC_head The struc 88.8 1.5 3.3E-05 43.3 7.7 29 218-246 24-52 (178)
361 PTZ00110 helicase; Provisional 88.7 3.7 8.1E-05 48.3 12.2 120 240-374 376-496 (545)
362 PRK05563 DNA polymerase III su 88.7 3.9 8.5E-05 48.2 12.3 20 218-237 40-59 (559)
363 PRK05707 DNA polymerase III su 88.5 3.2 6.9E-05 45.4 10.7 35 202-236 4-42 (328)
364 TIGR01241 FtsH_fam ATP-depende 88.5 7.1 0.00015 45.4 14.1 22 216-237 88-109 (495)
365 cd01126 TraG_VirD4 The TraG/Tr 88.4 0.24 5.2E-06 55.6 1.9 43 218-260 1-44 (384)
366 COG2255 RuvB Holliday junction 88.3 0.84 1.8E-05 47.7 5.5 72 578-675 237-309 (332)
367 PRK00080 ruvB Holliday junctio 88.3 1.6 3.5E-05 47.8 8.2 45 627-675 263-308 (328)
368 PRK14955 DNA polymerase III su 88.3 3.7 8.1E-05 46.2 11.4 20 218-237 40-59 (397)
369 COG0593 DnaA ATPase involved i 88.2 1.7 3.7E-05 48.5 8.3 47 315-365 175-221 (408)
370 PF02534 T4SS-DNA_transf: Type 88.1 0.33 7.2E-06 56.0 2.9 46 217-262 45-91 (469)
371 PRK12724 flagellar biosynthesi 88.0 6.6 0.00014 44.1 12.7 57 314-375 298-357 (432)
372 PRK14965 DNA polymerase III su 88.0 5.4 0.00012 47.3 12.9 20 218-237 40-59 (576)
373 PRK08769 DNA polymerase III su 87.9 3.5 7.7E-05 44.8 10.4 36 199-234 2-44 (319)
374 PRK14948 DNA polymerase III su 87.9 6.2 0.00013 47.0 13.3 22 217-238 39-60 (620)
375 PRK14957 DNA polymerase III su 87.9 1.7 3.8E-05 50.6 8.5 20 219-238 41-60 (546)
376 TIGR02785 addA_Gpos recombinat 87.8 0.89 1.9E-05 58.7 6.7 119 201-326 1-126 (1232)
377 PF01443 Viral_helicase1: Vira 87.8 0.68 1.5E-05 47.7 4.7 39 219-258 1-39 (234)
378 TIGR02639 ClpA ATP-dependent C 87.5 2.8 6.2E-05 51.2 10.5 19 216-234 203-221 (731)
379 TIGR02640 gas_vesic_GvpN gas v 87.3 1 2.2E-05 47.7 5.8 39 209-247 14-52 (262)
380 PRK09376 rho transcription ter 87.3 0.9 1.9E-05 50.3 5.3 18 215-232 168-185 (416)
381 PRK06067 flagellar accessory p 87.3 5.7 0.00012 41.0 11.3 47 216-263 25-74 (234)
382 PHA02544 44 clamp loader, smal 87.2 2.9 6.3E-05 45.4 9.5 13 315-327 100-112 (316)
383 PRK14954 DNA polymerase III su 87.1 4.2 9.2E-05 48.3 11.2 20 218-237 40-59 (620)
384 cd01130 VirB11-like_ATPase Typ 87.1 0.85 1.8E-05 45.5 4.8 35 199-233 7-42 (186)
385 PRK14959 DNA polymerase III su 87.1 7.2 0.00016 46.1 12.9 21 218-238 40-60 (624)
386 PRK10867 signal recognition pa 86.9 7.7 0.00017 44.0 12.7 24 647-670 394-417 (433)
387 PRK11823 DNA repair protein Ra 86.7 3.9 8.6E-05 46.7 10.5 43 216-259 80-125 (446)
388 PRK10590 ATP-dependent RNA hel 86.7 3.7 8E-05 47.2 10.4 121 241-376 245-366 (456)
389 TIGR02639 ClpA ATP-dependent C 86.3 2.5 5.3E-05 51.7 9.0 22 218-239 486-507 (731)
390 PHA00350 putative assembly pro 86.2 3.8 8.3E-05 45.7 9.6 24 219-242 4-31 (399)
391 COG2345 Predicted transcriptio 86.2 5.8 0.00012 40.3 10.0 60 646-705 27-96 (218)
392 PRK11034 clpA ATP-dependent Cl 86.2 5.1 0.00011 48.8 11.5 21 216-236 207-227 (758)
393 PRK11331 5-methylcytosine-spec 86.0 2.8 6E-05 47.4 8.5 34 204-237 182-215 (459)
394 PF05707 Zot: Zonular occluden 85.9 1.7 3.6E-05 43.7 6.1 17 219-235 3-19 (193)
395 PRK05416 glmZ(sRNA)-inactivati 85.8 42 0.00091 36.0 17.0 86 217-304 7-102 (288)
396 COG2909 MalT ATP-dependent tra 85.7 3.7 8.1E-05 49.2 9.6 45 313-363 127-171 (894)
397 PRK08451 DNA polymerase III su 85.6 6.8 0.00015 45.6 11.6 19 219-237 39-57 (535)
398 PF05496 RuvB_N: Holliday junc 85.5 1.6 3.5E-05 44.5 5.7 79 218-296 52-135 (233)
399 cd00983 recA RecA is a bacter 85.5 4.7 0.0001 43.9 9.6 46 216-261 55-103 (325)
400 COG5008 PilU Tfp pilus assembl 85.4 4.6 9.9E-05 41.9 8.8 103 217-326 128-234 (375)
401 COG2804 PulE Type II secretory 85.4 1.5 3.2E-05 49.8 5.9 31 202-232 242-274 (500)
402 TIGR03499 FlhF flagellar biosy 85.4 5.1 0.00011 42.9 9.9 19 216-234 194-212 (282)
403 PRK13851 type IV secretion sys 85.4 1.1 2.3E-05 49.3 4.8 42 213-254 159-202 (344)
404 KOG0701 dsRNA-specific nucleas 85.3 0.65 1.4E-05 59.5 3.4 95 423-517 293-399 (1606)
405 TIGR00373 conserved hypothetic 85.2 11 0.00023 36.6 11.1 44 627-677 18-61 (158)
406 PF13730 HTH_36: Helix-turn-he 85.2 2.4 5.1E-05 32.8 5.4 30 645-674 26-55 (55)
407 COG0464 SpoVK ATPases of the A 85.2 3.5 7.5E-05 48.0 9.3 112 217-368 277-392 (494)
408 PF01978 TrmB: Sugar-specific 85.2 3.3 7.2E-05 33.6 6.6 39 645-683 23-61 (68)
409 PRK10865 protein disaggregatio 85.2 2.9 6.3E-05 51.9 9.0 19 217-235 200-218 (857)
410 TIGR00959 ffh signal recogniti 85.1 18 0.00039 41.1 14.4 24 647-670 398-421 (428)
411 PRK13897 type IV secretion sys 85.0 0.62 1.4E-05 54.9 2.9 48 216-263 158-206 (606)
412 COG1435 Tdk Thymidine kinase [ 84.9 4.9 0.00011 39.9 8.6 89 216-328 4-95 (201)
413 PRK05973 replicative DNA helic 84.9 4.2 9.1E-05 42.2 8.6 61 201-263 50-113 (237)
414 KOG0733 Nuclear AAA ATPase (VC 84.7 1.9 4.1E-05 49.7 6.3 147 165-366 508-659 (802)
415 COG3973 Superfamily I DNA and 84.7 5.9 0.00013 45.8 10.1 90 168-264 185-283 (747)
416 PRK09112 DNA polymerase III su 84.6 8.4 0.00018 42.5 11.4 17 218-234 47-63 (351)
417 TIGR00767 rho transcription te 84.6 2.7 5.9E-05 46.8 7.4 21 215-235 167-187 (415)
418 TIGR03345 VI_ClpV1 type VI sec 84.6 4.7 0.0001 50.0 10.4 30 205-234 570-614 (852)
419 KOG0734 AAA+-type ATPase conta 84.5 8.4 0.00018 43.9 11.0 55 315-369 396-454 (752)
420 TIGR02524 dot_icm_DotB Dot/Icm 84.5 0.96 2.1E-05 50.0 4.0 18 216-233 134-151 (358)
421 cd00079 HELICc Helicase superf 84.4 6.6 0.00014 35.8 9.2 78 241-325 28-106 (131)
422 PRK01297 ATP-dependent RNA hel 84.4 5.2 0.00011 46.2 10.2 105 241-359 335-440 (475)
423 TIGR01420 pilT_fam pilus retra 84.4 3.8 8.1E-05 45.2 8.6 18 216-233 122-139 (343)
424 PRK10733 hflB ATP-dependent me 84.3 4.4 9.5E-05 48.7 9.7 27 216-242 185-211 (644)
425 TIGR00763 lon ATP-dependent pr 84.2 2.8 6.1E-05 51.5 8.2 22 216-237 347-368 (775)
426 CHL00195 ycf46 Ycf46; Provisio 84.2 5.7 0.00012 45.9 10.2 23 216-238 259-281 (489)
427 TIGR03600 phage_DnaB phage rep 84.2 16 0.00034 41.6 13.8 110 215-328 193-318 (421)
428 PF00437 T2SE: Type II/IV secr 84.1 1.4 3E-05 46.8 4.9 40 215-254 126-168 (270)
429 PF06733 DEAD_2: DEAD_2; Inte 84.0 0.82 1.8E-05 45.0 2.9 40 290-329 119-159 (174)
430 PRK04837 ATP-dependent RNA hel 83.9 2.6 5.6E-05 47.9 7.3 76 241-323 255-331 (423)
431 KOG0331 ATP-dependent RNA heli 83.9 6.1 0.00013 45.4 10.0 74 241-321 341-415 (519)
432 PRK11192 ATP-dependent RNA hel 83.9 5.6 0.00012 45.4 10.1 74 241-321 245-319 (434)
433 PRK11776 ATP-dependent RNA hel 83.8 3.3 7E-05 47.7 8.2 77 241-324 242-319 (460)
434 COG0542 clpA ATP-binding subun 83.8 3.8 8.2E-05 49.3 8.7 28 205-232 495-537 (786)
435 KOG1016 Predicted DNA helicase 83.5 3.5 7.5E-05 48.5 7.8 105 422-526 719-844 (1387)
436 KOG1133 Helicase of the DEAD s 83.5 1.2 2.6E-05 51.7 4.2 38 201-238 15-56 (821)
437 cd00561 CobA_CobO_BtuR ATP:cor 83.5 8.6 0.00019 37.2 9.5 51 313-367 93-143 (159)
438 PRK14953 DNA polymerase III su 83.4 13 0.00028 43.0 12.7 21 219-239 41-61 (486)
439 PRK07133 DNA polymerase III su 83.3 13 0.00029 44.7 13.0 20 218-237 42-61 (725)
440 PRK10436 hypothetical protein; 83.3 3.1 6.7E-05 47.6 7.5 31 203-233 203-235 (462)
441 PLN00020 ribulose bisphosphate 83.1 2.3 5E-05 46.6 6.0 74 217-328 149-225 (413)
442 TIGR02525 plasmid_TraJ plasmid 83.1 0.97 2.1E-05 50.2 3.3 18 216-233 149-166 (372)
443 COG3267 ExeA Type II secretory 83.0 5.6 0.00012 41.2 8.3 42 212-253 46-90 (269)
444 KOG0733 Nuclear AAA ATPase (VC 82.9 4.3 9.4E-05 46.8 8.2 55 316-372 283-347 (802)
445 PRK13850 type IV secretion sys 82.8 1 2.2E-05 53.8 3.6 46 216-261 139-185 (670)
446 PF00392 GntR: Bacterial regul 82.7 6.3 0.00014 31.6 7.1 52 627-679 8-59 (64)
447 PRK08533 flagellar accessory p 82.6 11 0.00024 39.0 10.7 36 215-250 23-61 (230)
448 KOG0732 AAA+-type ATPase conta 82.6 4.4 9.5E-05 50.1 8.6 155 164-367 261-419 (1080)
449 PF10593 Z1: Z1 domain; Inter 82.5 8.1 0.00018 40.2 9.6 110 436-555 101-215 (239)
450 TIGR00708 cobA cob(I)alamin ad 82.5 14 0.0003 36.3 10.6 49 314-366 96-144 (173)
451 PRK06647 DNA polymerase III su 82.4 15 0.00033 43.3 12.9 20 218-237 40-59 (563)
452 COG4098 comFA Superfamily II D 82.4 5.1 0.00011 43.0 7.9 81 241-328 305-386 (441)
453 PRK10141 DNA-binding transcrip 82.4 22 0.00048 32.5 11.2 43 645-687 31-73 (117)
454 KOG0739 AAA+-type ATPase [Post 82.2 15 0.00032 38.9 11.1 112 218-370 168-285 (439)
455 PRK14701 reverse gyrase; Provi 82.0 4.4 9.5E-05 53.4 9.0 62 421-482 121-188 (1638)
456 KOG1806 DEAD box containing he 82.0 1.6 3.4E-05 52.8 4.5 105 199-303 736-847 (1320)
457 PF01637 Arch_ATPase: Archaeal 82.0 4.3 9.4E-05 41.3 7.5 17 216-232 20-36 (234)
458 COG1197 Mfd Transcription-repa 81.9 6.6 0.00014 48.9 9.8 118 204-328 730-886 (1139)
459 PRK13876 conjugal transfer cou 81.6 1.1 2.3E-05 53.6 3.1 47 216-262 144-191 (663)
460 PRK13900 type IV secretion sys 81.5 1.6 3.5E-05 47.8 4.2 42 213-254 157-200 (332)
461 PRK08840 replicative DNA helic 81.3 25 0.00053 40.5 13.9 111 215-328 216-342 (464)
462 PRK14971 DNA polymerase III su 81.3 15 0.00032 43.9 12.4 21 218-238 41-61 (614)
463 PF01325 Fe_dep_repress: Iron 81.2 3.2 7E-05 33.0 4.7 34 645-678 23-56 (60)
464 COG0630 VirB11 Type IV secreto 81.1 2.7 5.9E-05 45.6 5.8 55 199-254 125-183 (312)
465 PF05729 NACHT: NACHT domain 81.1 7.7 0.00017 37.0 8.5 17 218-234 2-18 (166)
466 PRK05986 cob(I)alamin adenolsy 81.0 12 0.00027 37.3 9.8 34 215-248 21-57 (191)
467 PRK06964 DNA polymerase III su 81.0 4.1 8.9E-05 44.7 7.1 34 203-236 3-41 (342)
468 COG2812 DnaX DNA polymerase II 81.0 4.1 8.8E-05 47.0 7.3 23 218-240 40-62 (515)
469 smart00419 HTH_CRP helix_turn_ 80.9 3.8 8.2E-05 30.3 4.9 34 645-678 9-42 (48)
470 TIGR02012 tigrfam_recA protein 80.9 6.7 0.00015 42.6 8.6 42 216-257 55-99 (321)
471 TIGR00678 holB DNA polymerase 80.8 21 0.00045 35.4 11.7 17 218-234 16-32 (188)
472 TIGR03346 chaperone_ClpB ATP-d 80.8 9.5 0.00021 47.5 11.1 18 217-234 195-212 (852)
473 CHL00095 clpC Clp protease ATP 80.6 7.2 0.00016 48.4 10.0 22 216-237 200-221 (821)
474 PHA00012 I assembly protein 80.6 7.7 0.00017 41.8 8.6 46 314-362 80-128 (361)
475 PRK07940 DNA polymerase III su 80.4 20 0.00043 40.3 12.4 20 217-236 37-56 (394)
476 PRK09354 recA recombinase A; P 80.3 10 0.00022 41.6 9.8 45 216-260 60-107 (349)
477 PRK11634 ATP-dependent RNA hel 80.3 6.7 0.00015 47.0 9.2 74 241-321 245-319 (629)
478 KOG1513 Nuclear helicase MOP-3 80.1 5.3 0.00012 47.2 7.8 55 465-519 850-912 (1300)
479 PRK06904 replicative DNA helic 80.0 20 0.00043 41.4 12.6 111 216-329 221-348 (472)
480 PF14532 Sigma54_activ_2: Sigm 80.0 2.9 6.3E-05 39.3 4.9 89 215-303 20-113 (138)
481 COG1702 PhoH Phosphate starvat 79.9 1.2 2.7E-05 47.8 2.5 40 199-238 126-165 (348)
482 KOG0729 26S proteasome regulat 79.9 45 0.00097 34.8 13.4 40 216-256 211-250 (435)
483 PRK06871 DNA polymerase III su 79.8 13 0.00028 40.5 10.5 33 203-235 4-43 (325)
484 COG0465 HflB ATP-dependent Zn 79.7 4.5 9.8E-05 47.3 7.2 76 291-368 220-302 (596)
485 KOG0745 Putative ATP-dependent 79.6 1.8 3.9E-05 47.8 3.7 24 216-239 226-249 (564)
486 PTZ00293 thymidine kinase; Pro 79.4 11 0.00024 38.2 9.1 36 216-251 4-42 (211)
487 cd01129 PulE-GspE PulE/GspE Th 79.3 2.8 6E-05 44.4 5.0 31 203-233 65-97 (264)
488 COG0513 SrmB Superfamily II DN 79.2 6 0.00013 46.2 8.2 73 241-320 273-346 (513)
489 TIGR02767 TraG-Ti Ti-type conj 79.0 1.6 3.4E-05 51.8 3.3 43 217-259 212-255 (623)
490 TIGR03346 chaperone_ClpB ATP-d 78.9 6.3 0.00014 49.1 8.7 33 205-237 569-616 (852)
491 PRK05748 replicative DNA helic 78.9 26 0.00057 40.1 13.2 109 216-328 203-327 (448)
492 PF03796 DnaB_C: DnaB-like hel 78.9 16 0.00034 38.5 10.6 111 216-330 19-145 (259)
493 PF13555 AAA_29: P-loop contai 78.9 1.5 3.3E-05 35.1 2.1 18 216-233 23-40 (62)
494 cd01128 rho_factor Transcripti 78.8 3.5 7.7E-05 43.1 5.5 20 214-233 14-33 (249)
495 PTZ00424 helicase 45; Provisio 78.8 3.9 8.4E-05 46.0 6.4 75 241-322 267-342 (401)
496 PF01745 IPT: Isopentenyl tran 78.8 2.1 4.5E-05 43.2 3.6 29 219-247 4-32 (233)
497 PRK06090 DNA polymerase III su 78.8 7.5 0.00016 42.3 8.2 35 202-236 4-45 (319)
498 PRK00440 rfc replication facto 78.7 15 0.00033 39.6 10.9 19 218-236 40-58 (319)
499 PRK13822 conjugal transfer cou 78.7 1.6 3.5E-05 52.0 3.3 45 216-260 224-269 (641)
500 PF00325 Crp: Bacterial regula 78.5 4.2 9.1E-05 27.9 3.9 28 647-674 5-32 (32)
No 1
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-74 Score=644.24 Aligned_cols=340 Identities=41% Similarity=0.659 Sum_probs=311.4
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCC-Cce
Q 036378 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP-VIH 266 (815)
Q Consensus 188 ~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~-~~~ 266 (815)
.+..+|+++|||..||+.|.++|..+++|+|+++++|||+|||+|||+|++...|.+|||+|+++||+||++.+.. ++.
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~ 83 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIR 83 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCce
Confidence 4557899999999999999999999999999999999999999999999999999999999999999999999998 889
Q ss_pred eeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHH
Q 036378 267 GGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLL 346 (815)
Q Consensus 267 ~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~ 346 (815)
+..+++.++..+....+..+..|.+++||.+||+|.+..+.+.+. -..+.++|||||||+|+|||+|||+|..+ .. +
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~-~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l-g~-l 160 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLK-RLPISLVAIDEAHCISQWGHDFRPDYRRL-GR-L 160 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHH-hCCCceEEechHHHHhhcCCccCHhHHHH-HH-H
Confidence 999999999999999999999999999999999999999988888 56899999999999999999999999999 44 5
Q ss_pred HHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceE
Q 036378 347 RARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYIL 426 (815)
Q Consensus 347 ~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i 426 (815)
....+.++++++|||+++.+..||.+.|.+....++..++.|+|+.+.+....+.... +..+.. .........+
T Consensus 161 ~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q-----~~fi~~-~~~~~~~~GI 234 (590)
T COG0514 161 RAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQ-----LAFLAT-VLPQLSKSGI 234 (590)
T ss_pred HhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHH-----HHHHHh-hccccCCCeE
Confidence 5666788999999999999999999999999999999999999999998876522221 001111 1133456689
Q ss_pred EEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHH
Q 036378 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEY 506 (815)
Q Consensus 427 vf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y 506 (815)
|||.||+.++.+++.|...|+.+..|||||+.++|..++++|..++++|||||.|||||||+||||+|||||+|.|+|+|
T Consensus 235 IYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsY 314 (590)
T COG0514 235 IYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESY 314 (590)
T ss_pred EEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCCCCCCceEEEEeccccHHHHHH
Q 036378 507 VQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536 (815)
Q Consensus 507 ~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~ 536 (815)
+|++|||||||.++.|++||++.|....+.
T Consensus 315 yQE~GRAGRDG~~a~aill~~~~D~~~~~~ 344 (590)
T COG0514 315 YQETGRAGRDGLPAEAILLYSPEDIRWQRY 344 (590)
T ss_pred HHHHhhccCCCCcceEEEeeccccHHHHHH
Confidence 999999999999999999999988765543
No 2
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.4e-69 Score=635.39 Aligned_cols=346 Identities=34% Similarity=0.555 Sum_probs=302.0
Q ss_pred hhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcC
Q 036378 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLP 262 (815)
Q Consensus 183 ~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~ 262 (815)
.+++..+..+++.+|||..|||+|.++|++++.|+|+|++||||+|||+||++|++..++.+|||+|+++||.||+..+.
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~ 521 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLL 521 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHH
Confidence 45666777889999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred C-CceeeeeccCCChHHHHHHHHHHhc--CCceEEEeChhhhhchh-hhhhhh---hcCcccEEEEeccccccccccCch
Q 036378 263 P-VIHGGFLSSSQRPEEVAETIRLIQV--GAIKVLFVSPERFLNAD-FLSIFT---ATSLISLVVVDEAHCVSEWSHNFR 335 (815)
Q Consensus 263 ~-~~~~~~i~~~~~~~~~~~~~~~l~~--g~~~Ili~TPe~L~~~~-~~~~~~---~~~~i~~lViDEaH~i~~~g~~fr 335 (815)
. ++.+..+.+++...+....++.+.. |.++|||+|||+|.... +...+. ....+.+||||||||+++|||+||
T Consensus 522 ~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFR 601 (1195)
T PLN03137 522 QANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFR 601 (1195)
T ss_pred hCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchH
Confidence 6 7888899999998888888887766 88999999999997532 222222 134589999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHH
Q 036378 336 PSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFS 415 (815)
Q Consensus 336 ~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~ 415 (815)
|+|..+ ..++..++..++++||||++..+..++...|++....++..++.++|+.+.+...... .+..+..
T Consensus 602 pdYr~L--~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk-------~le~L~~ 672 (1195)
T PLN03137 602 PDYQGL--GILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKK-------CLEDIDK 672 (1195)
T ss_pred HHHHHH--HHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchh-------HHHHHHH
Confidence 999987 4456667788999999999999999999999988888888999999999987754321 1122223
Q ss_pred HHh-hccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEE
Q 036378 416 FHR-SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494 (815)
Q Consensus 416 l~~-~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~V 494 (815)
++. .......||||++++.|+.+++.|...|+.+..|||+|++++|..++++|.+|+++|||||++||||||+|+|++|
T Consensus 673 ~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~V 752 (1195)
T PLN03137 673 FIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV 752 (1195)
T ss_pred HHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEE
Confidence 322 2235678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 495 I~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
|||++|.|+++|+||+|||||+|++|.|++||+..|+..++.+
T Consensus 753 IHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 753 IHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred EEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 9999999999999999999999999999999988877655543
No 3
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.2e-63 Score=586.23 Aligned_cols=337 Identities=38% Similarity=0.625 Sum_probs=301.6
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCC-Cceee
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP-VIHGG 268 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~ 268 (815)
.++|+.+|||++|||+|+++|++++.|+|++++||||+|||+||++|++..++.++||+|+++||.||++.+.. ++...
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999987 67778
Q ss_pred eeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHH
Q 036378 269 FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRA 348 (815)
Q Consensus 269 ~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~ 348 (815)
.+++.....+....+..+..|.++|+|+|||+|.+..+...+. ..++++||||||||+++|||+|||.|..+ .. +..
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~-~~~l~~iViDEaH~i~~~g~~frp~y~~l-~~-l~~ 158 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQ-RIPIALVAVDEAHCVSQWGHDFRPEYQRL-GS-LAE 158 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHh-cCCCCEEEEeCCcccccccCccHHHHHHH-HH-HHH
Confidence 8889998888888888899999999999999999877777665 66899999999999999999999999998 33 444
Q ss_pred hcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEE
Q 036378 349 RLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428 (815)
Q Consensus 349 ~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf 428 (815)
..+..+++++|||++..+..++...+.+.....+..++.++|+.+.+....... ..+...+....+.+++||
T Consensus 159 ~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~--------~~l~~~l~~~~~~~~IIf 230 (591)
T TIGR01389 159 RFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQ--------KFLLDYLKKHRGQSGIIY 230 (591)
T ss_pred hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHH--------HHHHHHHHhcCCCCEEEE
Confidence 555667999999999999999999999888888888889999988876543221 122233333446789999
Q ss_pred ecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHH
Q 036378 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQ 508 (815)
Q Consensus 429 ~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Q 508 (815)
|++++.++.+++.|...|+.+..|||+|+.++|..+++.|++|+++|||||++|+||||+|+|++||||++|.|+++|+|
T Consensus 231 ~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q 310 (591)
T TIGR01389 231 ASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQ 310 (591)
T ss_pred ECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 509 EIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 509 r~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
|+|||||+|.+|.|+++|++.|...++.+
T Consensus 311 ~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 311 EAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred hhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 99999999999999999998887665543
No 4
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2e-63 Score=582.60 Aligned_cols=336 Identities=37% Similarity=0.618 Sum_probs=298.0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCC-Ccee
Q 036378 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP-VIHG 267 (815)
Q Consensus 189 l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~ 267 (815)
..++|+.+|||..|||+|+++|++++.|+|+++++|||+|||+||++|++...+.+|||+|+++||.||++.+.. ++..
T Consensus 13 ~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~~gi~~ 92 (607)
T PRK11057 13 AKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLANGVAA 92 (607)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHHcCCcE
Confidence 456778889999999999999999999999999999999999999999999999999999999999999999987 6777
Q ss_pred eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHH
Q 036378 268 GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR 347 (815)
Q Consensus 268 ~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~ 347 (815)
..+++.....+....+..+..|.++++|+|||+|....+...+. ..++++||||||||+++|||+|||.|..+ .. ++
T Consensus 93 ~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~-~~~l~~iVIDEaH~i~~~G~~fr~~y~~L-~~-l~ 169 (607)
T PRK11057 93 ACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLA-HWNPALLAVDEAHCISQWGHDFRPEYAAL-GQ-LR 169 (607)
T ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHh-hCCCCEEEEeCccccccccCcccHHHHHH-HH-HH
Confidence 77888888887777788888999999999999998776666655 45899999999999999999999999888 33 45
Q ss_pred HhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEE
Q 036378 348 ARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQ 427 (815)
Q Consensus 348 ~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~iv 427 (815)
...+..+++++|||++..+..++...+.+..+.+....+.++|+.+.+...... ...+...+....+.+++|
T Consensus 170 ~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~--------~~~l~~~l~~~~~~~~II 241 (607)
T PRK11057 170 QRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKP--------LDQLMRYVQEQRGKSGII 241 (607)
T ss_pred HhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccch--------HHHHHHHHHhcCCCCEEE
Confidence 556778999999999999999999999888777777788889988776543221 122334444456778999
Q ss_pred EecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHH
Q 036378 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYV 507 (815)
Q Consensus 428 f~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~ 507 (815)
||+++++++.+++.|...|+.+..|||+|++++|.++++.|++|+++|||||++++||||+|+|++|||||+|.|+++|+
T Consensus 242 Fc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~ 321 (607)
T PRK11057 242 YCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYY 321 (607)
T ss_pred EECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCCCCCCceEEEEeccccHHHHH
Q 036378 508 QEIGRAGRDGRLSYCHLFLDDITYFRLR 535 (815)
Q Consensus 508 Qr~GRaGR~g~~g~~i~l~~~~d~~~l~ 535 (815)
||+|||||+|.+|.|++||++.|...++
T Consensus 322 Qr~GRaGR~G~~~~~ill~~~~d~~~~~ 349 (607)
T PRK11057 322 QETGRAGRDGLPAEAMLFYDPADMAWLR 349 (607)
T ss_pred HHhhhccCCCCCceEEEEeCHHHHHHHH
Confidence 9999999999999999999988765444
No 5
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-62 Score=561.92 Aligned_cols=336 Identities=39% Similarity=0.642 Sum_probs=296.2
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCC-Cceeeee
Q 036378 192 LLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFL 270 (815)
Q Consensus 192 ~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i 270 (815)
+|+..|||..|||+|.+||+++++|+|+++++|||+|||+||++|++..++.+|||+||++||.||++.+.. ++....+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 477889999999999999999999999999999999999999999999999999999999999999999987 6777788
Q ss_pred ccCCChHHHHHHHHHHhcCCceEEEeChhhhhchh-hhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHh
Q 036378 271 SSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD-FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR 349 (815)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~-~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~ 349 (815)
.+.....+....+..+..|.++|+|+|||++.... +...+....++++||||||||+++|||+||+.|..+ . .++..
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l-~-~l~~~ 159 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL-G-SLKQK 159 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH-H-HHHHH
Confidence 88888887787888888899999999999997644 444442367899999999999999999999999988 3 34555
Q ss_pred cccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHh-hccccceEEE
Q 036378 350 LNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR-SSKHYYILQI 428 (815)
Q Consensus 350 ~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~ivf 428 (815)
.+..+++++|||++..+..++.+.+++....++..++.++|+.+.+...... .+..+...+. ...+..++||
T Consensus 160 ~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~-------~~~~l~~~l~~~~~~~~~IIF 232 (470)
T TIGR00614 160 FPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPK-------ILEDLLRFIRKEFKGKSGIIY 232 (470)
T ss_pred cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCcc-------HHHHHHHHHHHhcCCCceEEE
Confidence 6778999999999999999999999988888888888899998877654421 1122223322 3455667999
Q ss_pred ecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHH
Q 036378 429 SGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQ 508 (815)
Q Consensus 429 ~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Q 508 (815)
|++++.++.+++.|...|+.+..|||+|++++|.+++++|++|+++|||||++++||||+|+|++||||++|.|+++|+|
T Consensus 233 ~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Q 312 (470)
T TIGR00614 233 CPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQ 312 (470)
T ss_pred ECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCCCCCCceEEEEeccccHHHHHH
Q 036378 509 EIGRAGRDGRLSYCHLFLDDITYFRLRS 536 (815)
Q Consensus 509 r~GRaGR~g~~g~~i~l~~~~d~~~l~~ 536 (815)
|+|||||+|++|.|++|+++.|...++.
T Consensus 313 r~GRaGR~G~~~~~~~~~~~~d~~~~~~ 340 (470)
T TIGR00614 313 ESGRAGRDGLPSECHLFYAPADINRLRR 340 (470)
T ss_pred hhcCcCCCCCCceEEEEechhHHHHHHH
Confidence 9999999999999999999887665553
No 6
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.6e-64 Score=589.66 Aligned_cols=402 Identities=39% Similarity=0.574 Sum_probs=344.3
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhc-CCC
Q 036378 186 DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHL-PPV 264 (815)
Q Consensus 186 ~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l-~~~ 264 (815)
...+...|...||+..|||.|.+||..++.|+|+++.||||+||++|||+|++..++.+|||+|+++||+||+..| ...
T Consensus 249 t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~ 328 (941)
T KOG0351|consen 249 TKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKG 328 (941)
T ss_pred chHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcC
Confidence 3456778888999999999999999999999999999999999999999999999999999999999999999999 458
Q ss_pred ceeeeeccCCChHHHHHHHHHHhcC--CceEEEeChhhhhchhh-hhhhhhcCc---ccEEEEeccccccccccCchHHH
Q 036378 265 IHGGFLSSSQRPEEVAETIRLIQVG--AIKVLFVSPERFLNADF-LSIFTATSL---ISLVVVDEAHCVSEWSHNFRPSY 338 (815)
Q Consensus 265 ~~~~~i~~~~~~~~~~~~~~~l~~g--~~~Ili~TPe~L~~~~~-~~~~~~~~~---i~~lViDEaH~i~~~g~~fr~~~ 338 (815)
+++..+.+.+...+....++.+..| .++|+|.|||.+..... ...+..+.. +.++|||||||+++|||+|||+|
T Consensus 329 I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Y 408 (941)
T KOG0351|consen 329 IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSY 408 (941)
T ss_pred cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHH
Confidence 9999999999999999999999999 89999999999987432 223333444 89999999999999999999999
Q ss_pred HHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHh
Q 036378 339 MRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR 418 (815)
Q Consensus 339 ~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~ 418 (815)
.++ ..++...+..++|++|||++..+..|+.+.|++..+.++..++.|+|+.+.|........ ....+.....
T Consensus 409 k~l--~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~-----~~~~~~~~~~ 481 (941)
T KOG0351|consen 409 KRL--GLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDA-----LLDILEESKL 481 (941)
T ss_pred HHH--HHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccc-----hHHHHHHhhh
Confidence 999 456677777899999999999999999999999999999999999999999998875332 2223334455
Q ss_pred hccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeC
Q 036378 419 SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYS 498 (815)
Q Consensus 419 ~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d 498 (815)
......+||+|.++++|+.++..|+..|+.+..||+||++.+|..|+++|..++++|+|||.|||||||+||||.||||+
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~ 561 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYS 561 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECC
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhhcCCCCHH----------------------HHHHHHHHHh
Q 036378 499 LPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEY----------------------AINKFLCQVF 556 (815)
Q Consensus 499 ~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~~~~~~~~----------------------~i~~~l~~~~ 556 (815)
+|+|+|.|+|++|||||||.++.|++||+..|...++.++........ |-++.+..+|
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~f 641 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRLSGVKKFTRLLELVQVVTYCENETDCRRKQILEYF 641 (941)
T ss_pred CchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHccccccchhhccchhhHHHHHHhhcCccchhHHHHHHhc
Confidence 999999999999999999999999999999999999999876621111 1112233334
Q ss_pred hcCCCCCCCeee--cchhHHHHHhCCCHHHHHHHHHHHHhcC
Q 036378 557 TNGMNSHGKLCS--LVKESASRKFDIKEEVMLTLLTCLELGE 596 (815)
Q Consensus 557 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~le~~~ 596 (815)
+... ..+.|. ..+++.+...|+..+........++.+.
T Consensus 642 ge~f--~~~~c~~~k~cd~C~~~~dv~~~~~d~~~~~~~~~~ 681 (941)
T KOG0351|consen 642 GEEF--DSKHCKKHKTCDNCRESLDVAYELRDVTLTALDAHP 681 (941)
T ss_pred cccc--chhhccCCchHHHhhcccccchHHHHHHHHHHHHhh
Confidence 4331 111222 4566677778888888787788777543
No 7
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-62 Score=507.35 Aligned_cols=346 Identities=33% Similarity=0.545 Sum_probs=302.4
Q ss_pred HHHHHHHHHhcCCCCCC-HHHHHHHHHHHcCC-CEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCC-
Q 036378 187 ENLGRLLRLVYGYDSFR-DGQLEAIKMVLDKK-STMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP- 263 (815)
Q Consensus 187 ~~l~~~l~~~~g~~~~~-~~Q~~ai~~il~g~-d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~- 263 (815)
..+.+.|++.|||.+|. +.|++|+..+..++ |+.++||||+|||||||+|+|+.++++||++|+++|++||++.|.+
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhc
Confidence 45678899999999985 89999999988765 9999999999999999999999999999999999999999999998
Q ss_pred CceeeeeccCCChHHHHHHHHHHhcC--CceEEEeChhhhhchhhhhhhhhc---CcccEEEEeccccccccccCchHHH
Q 036378 264 VIHGGFLSSSQRPEEVAETIRLIQVG--AIKVLFVSPERFLNADFLSIFTAT---SLISLVVVDEAHCVSEWSHNFRPSY 338 (815)
Q Consensus 264 ~~~~~~i~~~~~~~~~~~~~~~l~~g--~~~Ili~TPe~L~~~~~~~~~~~~---~~i~~lViDEaH~i~~~g~~fr~~~ 338 (815)
.++...+++.++..++.+.+..+... +.+|||.|||.-....|+..+..+ ..++++|||||||+++|||+|||+|
T Consensus 85 KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDY 164 (641)
T KOG0352|consen 85 KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDY 164 (641)
T ss_pred CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcch
Confidence 67888999999999999988887653 578999999999887777666543 3689999999999999999999999
Q ss_pred HHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccc-eeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHH
Q 036378 339 MRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSN-LIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH 417 (815)
Q Consensus 339 ~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~ 417 (815)
+.+ .-++...+..+.++||||+++++.+||...|.+..+. ++..+..|.|+.|.+......... +..|.++.
T Consensus 165 L~L--G~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~-----~~~LaDF~ 237 (641)
T KOG0352|consen 165 LTL--GSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDC-----LTVLADFS 237 (641)
T ss_pred hhh--hhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhH-----hHhHHHHH
Confidence 999 4478888899999999999999999999999887664 678889999999876554322221 11111111
Q ss_pred h-hc------------cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccccc
Q 036378 418 R-SS------------KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484 (815)
Q Consensus 418 ~-~~------------~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~ 484 (815)
. .+ ..+-.||+|+||+.||.+|-.|...|+++..||+|+...||.+++++|+++++.||+||+.|||
T Consensus 238 ~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGM 317 (641)
T KOG0352|consen 238 SSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGM 317 (641)
T ss_pred HHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEecccc
Confidence 1 00 1244699999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhh
Q 036378 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539 (815)
Q Consensus 485 GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~ 539 (815)
|+|+|+||+|||+++|.++..|+|+.|||||||++++|-++|+.+|...++-++.
T Consensus 318 GVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 318 GVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred ccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888776654
No 8
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=8.5e-57 Score=457.99 Aligned_cols=353 Identities=32% Similarity=0.556 Sum_probs=313.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcC
Q 036378 183 EASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLP 262 (815)
Q Consensus 183 ~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~ 262 (815)
-+|.....++|+..|..++|||.|..+|.+.+.|+|+++++|||+|||+|||+|++...+.+|||+|+++||.+|...|+
T Consensus 76 fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~lk 155 (695)
T KOG0353|consen 76 FPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQLK 155 (695)
T ss_pred CCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHHHH
Confidence 35666677888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CceeeeeccCCChHHHHHHHHHHhc--CCceEEEeChhhhhc-hhhhhhhh---hcCcccEEEEeccccccccccCch
Q 036378 263 P-VIHGGFLSSSQRPEEVAETIRLIQV--GAIKVLFVSPERFLN-ADFLSIFT---ATSLISLVVVDEAHCVSEWSHNFR 335 (815)
Q Consensus 263 ~-~~~~~~i~~~~~~~~~~~~~~~l~~--g~~~Ili~TPe~L~~-~~~~~~~~---~~~~i~~lViDEaH~i~~~g~~fr 335 (815)
. ++.+..++...+.++.......+.+ .+.+++|+|||.+.. ..+.+.+. ....+.+|.|||+||-++|||+||
T Consensus 156 qlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr 235 (695)
T KOG0353|consen 156 QLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFR 235 (695)
T ss_pred HhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccC
Confidence 8 7788888888888887777666654 467899999999865 23333322 145789999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHH
Q 036378 336 PSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFS 415 (815)
Q Consensus 336 ~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~ 415 (815)
|+|..+ .+++..+++.++|++|||++..++.+....|.+.....++.++.|+|+.|.|...+..... .++.+..
T Consensus 236 ~dy~~l--~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd----~~edi~k 309 (695)
T KOG0353|consen 236 PDYKAL--GILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDD----CIEDIAK 309 (695)
T ss_pred cchHHH--HHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHH----HHHHHHH
Confidence 999998 6788888999999999999999999999999999999999999999999999987766553 2333333
Q ss_pred HH-hhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEE
Q 036378 416 FH-RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV 494 (815)
Q Consensus 416 l~-~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~V 494 (815)
+. ....+...+++|-+++.++.++..|+..|+.+..||+.|.+++|.-+.+.|..|+++|+|||.+||||||+||||+|
T Consensus 310 ~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfv 389 (695)
T KOG0353|consen 310 LIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFV 389 (695)
T ss_pred HhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEE
Confidence 32 33456778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHH-------------------------------------------HHcccCCCCCCceEEEEeccccH
Q 036378 495 IHYSLPESLEEYVQ-------------------------------------------EIGRAGRDGRLSYCHLFLDDITY 531 (815)
Q Consensus 495 I~~d~P~s~~~y~Q-------------------------------------------r~GRaGR~g~~g~~i~l~~~~d~ 531 (815)
||..+|+|+++|+| +.||||||+.++.|+++|.-.|+
T Consensus 390 ihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 390 IHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred EecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 99999999999999 89999999999999999999999
Q ss_pred HHHHHhhhcC
Q 036378 532 FRLRSLMYSD 541 (815)
Q Consensus 532 ~~l~~~~~~~ 541 (815)
..+..++...
T Consensus 470 fk~ssmv~~e 479 (695)
T KOG0353|consen 470 FKISSMVQME 479 (695)
T ss_pred HhHHHHHHHH
Confidence 9888876443
No 9
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-57 Score=492.95 Aligned_cols=345 Identities=21% Similarity=0.300 Sum_probs=286.6
Q ss_pred ccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----
Q 036378 166 TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----- 240 (815)
Q Consensus 166 ~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~----- 240 (815)
.|+.+.+++++...+.. .||+.|+|+|.+.||.++.|+|++.++.|||||||+|++|++.+
T Consensus 92 ~f~~~~ls~~~~~~lk~--------------~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~ 157 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKE--------------QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ 157 (519)
T ss_pred hhhcccccHHHHHHHHh--------------cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc
Confidence 88999999999999999 69999999999999999999999999999999999999999743
Q ss_pred -------CCcEEEEcccHHHHHHHHHhcCCCc-----eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhh
Q 036378 241 -------PGLTLVVCPLVALMIDQLRHLPPVI-----HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308 (815)
Q Consensus 241 -------~~~~lVl~P~~~L~~q~~~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~ 308 (815)
++++||++|||||+.|+.+.+..+. +..++.++.... .+++.+.+| ++|+|+||+||.+++...
T Consensus 158 ~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~---~Q~~~l~~g-vdiviaTPGRl~d~le~g 233 (519)
T KOG0331|consen 158 GKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKG---PQLRDLERG-VDVVIATPGRLIDLLEEG 233 (519)
T ss_pred ccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCcc---HHHHHHhcC-CcEEEeCChHHHHHHHcC
Confidence 5679999999999999999888732 345555555444 455666666 999999999999998888
Q ss_pred hhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHh-cccceeEeeecccChhHHHHHHHHhcCCccceeecc--
Q 036378 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR-LNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA-- 385 (815)
Q Consensus 309 ~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~-~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-- 385 (815)
.+. +.++.++|+||||+|+++ +|+++...|+. .. .+..|++++|||++..+......++..+....+...
T Consensus 234 ~~~-l~~v~ylVLDEADrMldm--GFe~qI~~Il~----~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~ 306 (519)
T KOG0331|consen 234 SLN-LSRVTYLVLDEADRMLDM--GFEPQIRKILS----QIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKE 306 (519)
T ss_pred Ccc-ccceeEEEeccHHhhhcc--ccHHHHHHHHH----hcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhh
Confidence 887 899999999999999998 69999988844 44 344589999999999999988888885444333222
Q ss_pred -ccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 036378 386 -QLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRI 464 (815)
Q Consensus 386 -~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i 464 (815)
....++...+..+....+ ...+..+..........++||||+|++.|++|+..|+..++++..+||+.++.+|..+
T Consensus 307 ~~a~~~i~qive~~~~~~K---~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 307 LKANHNIRQIVEVCDETAK---LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWV 383 (519)
T ss_pred hhhhcchhhhhhhcCHHHH---HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHH
Confidence 123333333333331111 1112111111123456799999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 465 ~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
++.|++|+..||||||+++||||+|+|++|||||+|.++|+|+||+||+||.|+.|.+++|++..+....+.++
T Consensus 384 L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~ 457 (519)
T KOG0331|consen 384 LKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELI 457 (519)
T ss_pred HHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887776654
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.8e-54 Score=496.80 Aligned_cols=346 Identities=18% Similarity=0.248 Sum_probs=274.8
Q ss_pred ccccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-
Q 036378 162 SYRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL- 240 (815)
Q Consensus 162 ~~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~- 240 (815)
....+|+++++++.+++.|.. +||..|+|+|.++||.+++|+|+|+++|||||||++|++|++..
T Consensus 127 ~p~~~f~~~~l~~~l~~~l~~--------------~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i 192 (545)
T PTZ00110 127 KPVVSFEYTSFPDYILKSLKN--------------AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHI 192 (545)
T ss_pred cccCCHhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHH
Confidence 345789999999999999998 79999999999999999999999999999999999999999743
Q ss_pred ----------CCcEEEEcccHHHHHHHHHhcCCCc-----eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchh
Q 036378 241 ----------PGLTLVVCPLVALMIDQLRHLPPVI-----HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305 (815)
Q Consensus 241 ----------~~~~lVl~P~~~L~~q~~~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~ 305 (815)
++++|||+||++|+.|+.+.+.++. ....+..+... ..+...+..+ ++|+|+||++|.+.+
T Consensus 193 ~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~---~~q~~~l~~~-~~IlVaTPgrL~d~l 268 (545)
T PTZ00110 193 NAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPK---RGQIYALRRG-VEILIACPGRLIDFL 268 (545)
T ss_pred HhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCH---HHHHHHHHcC-CCEEEECHHHHHHHH
Confidence 4579999999999999998888732 23333333332 2334445555 899999999999876
Q ss_pred hhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccce-eec
Q 036378 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNL-IQK 384 (815)
Q Consensus 306 ~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~-~~~ 384 (815)
...... +.++++|||||||++++| +|.+.+..+ +....+..|++++|||++.++.......+......+ +..
T Consensus 269 ~~~~~~-l~~v~~lViDEAd~mld~--gf~~~i~~i----l~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~ 341 (545)
T PTZ00110 269 ESNVTN-LRRVTYLVLDEADRMLDM--GFEPQIRKI----VSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGS 341 (545)
T ss_pred HcCCCC-hhhCcEEEeehHHhhhhc--chHHHHHHH----HHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECC
Confidence 655444 779999999999999998 688877666 344556789999999998887665555443221111 111
Q ss_pred c--ccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhc--cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHH
Q 036378 385 A--QLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS--KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKD 460 (815)
Q Consensus 385 ~--~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~ 460 (815)
. ....++...+.......+ ...+..++... ...++||||++++.|+.++..|...|+.+..+||+|++++
T Consensus 342 ~~l~~~~~i~q~~~~~~~~~k------~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~e 415 (545)
T PTZ00110 342 LDLTACHNIKQEVFVVEEHEK------RGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEE 415 (545)
T ss_pred CccccCCCeeEEEEEEechhH------HHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHH
Confidence 1 112333333333322111 12222333222 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 461 RSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 461 R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
|.+++++|++|+.+|||||++++||||+|+|++|||||+|.++++|+||+||+||+|+.|.|++|++++|...++.+.
T Consensus 416 R~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~ 493 (545)
T PTZ00110 416 RTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLV 493 (545)
T ss_pred HHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877666553
No 11
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-55 Score=448.63 Aligned_cols=347 Identities=16% Similarity=0.217 Sum_probs=286.0
Q ss_pred cccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc--
Q 036378 163 YRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-- 240 (815)
Q Consensus 163 ~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-- 240 (815)
...+|.++++.++++++..+ .|+..||++|+++||.++.|+|+|+.|.||||||.+|++|++..
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~--------------l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL 124 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQE--------------LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLL 124 (476)
T ss_pred hhcchhhcCcCHHHHHHHHH--------------hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHH
Confidence 34689999999999999999 79999999999999999999999999999999999999999854
Q ss_pred ----CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh
Q 036378 241 ----PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311 (815)
Q Consensus 241 ----~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~ 311 (815)
...++|++|||+|+.|+.+.+..+ ++...+.+++.......++ . .+++|+|+||++|.+++......
T Consensus 125 ~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L---~-kkPhilVaTPGrL~dhl~~Tkgf 200 (476)
T KOG0330|consen 125 QEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQL---S-KKPHILVATPGRLWDHLENTKGF 200 (476)
T ss_pred cCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHh---h-cCCCEEEeCcHHHHHHHHhccCc
Confidence 467999999999999999888873 4555666665544333322 2 36999999999999988755555
Q ss_pred hcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccc-cCCC
Q 036378 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQ-LRDN 390 (815)
Q Consensus 312 ~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~ 390 (815)
.+..++++|+||||+++++ +|.+....| ++..+..+|.+++|||++..+.+.....+..+........+ .-+.
T Consensus 201 ~le~lk~LVlDEADrlLd~--dF~~~ld~I----Lk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~ 274 (476)
T KOG0330|consen 201 SLEQLKFLVLDEADRLLDM--DFEEELDYI----LKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDH 274 (476)
T ss_pred cHHHhHHHhhchHHhhhhh--hhHHHHHHH----HHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHH
Confidence 5889999999999999988 888777666 55666788999999999999877665445444332221111 1122
Q ss_pred eeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhc
Q 036378 391 LQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS 470 (815)
Q Consensus 391 l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~ 470 (815)
+.........+.+. ..+..++....+..++|||++...++.++-.|+..|+.+..+||.|++..|.-.++.|++
T Consensus 275 lkQ~ylfv~~k~K~------~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~ 348 (476)
T KOG0330|consen 275 LKQTYLFVPGKDKD------TYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA 348 (476)
T ss_pred hhhheEeccccccc------hhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc
Confidence 32222332222221 223466666777999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhh
Q 036378 471 NKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539 (815)
Q Consensus 471 g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~ 539 (815)
|...||||||+++||+|+|.|++|||||+|.+..+|+||+||+||.|++|.++.|++..|+..+.++.+
T Consensus 349 ~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~ 417 (476)
T KOG0330|consen 349 GARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEH 417 (476)
T ss_pred cCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888877653
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-53 Score=481.78 Aligned_cols=344 Identities=21% Similarity=0.303 Sum_probs=289.7
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcC---
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP--- 241 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~--- 241 (815)
..|+++++.+++++++.+ .||..|+|+|.++||.++.|+|+++.++||||||++|.+|++..-
T Consensus 29 ~~F~~l~l~~~ll~~l~~--------------~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~ 94 (513)
T COG0513 29 PEFASLGLSPELLQALKD--------------LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS 94 (513)
T ss_pred CCHhhcCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc
Confidence 578999999999999999 799999999999999999999999999999999999999998641
Q ss_pred ----Cc-EEEEcccHHHHHHHHHhcCCCc------eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhh
Q 036378 242 ----GL-TLVVCPLVALMIDQLRHLPPVI------HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310 (815)
Q Consensus 242 ----~~-~lVl~P~~~L~~q~~~~l~~~~------~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~ 310 (815)
.. +||++|||+|+.|+.+.+..+. ....+.++.+... +...+..| ++|||+||+||++++....+
T Consensus 95 ~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~---q~~~l~~~-~~ivVaTPGRllD~i~~~~l 170 (513)
T COG0513 95 VERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRK---QIEALKRG-VDIVVATPGRLLDLIKRGKL 170 (513)
T ss_pred cccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHH---HHHHHhcC-CCEEEECccHHHHHHHcCCc
Confidence 12 9999999999999999998732 3345555554443 44556666 99999999999998888766
Q ss_pred hhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccc---c
Q 036378 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQ---L 387 (815)
Q Consensus 311 ~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~ 387 (815)
. +..+.++|+||||+|+++ +|.++...+ +...+...|++++|||++..+.......+..+....+.... .
T Consensus 171 ~-l~~v~~lVlDEADrmLd~--Gf~~~i~~I----~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~ 243 (513)
T COG0513 171 D-LSGVETLVLDEADRMLDM--GFIDDIEKI----LKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERT 243 (513)
T ss_pred c-hhhcCEEEeccHhhhhcC--CCHHHHHHH----HHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccccccc
Confidence 6 889999999999999998 899988877 44455578999999999997776666777755433332111 3
Q ss_pred CCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHH
Q 036378 388 RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467 (815)
Q Consensus 388 ~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~ 467 (815)
..++...+....... .....+..++.......++|||++++.++.|+..|...|+.+..+||+|++.+|.++++.
T Consensus 244 ~~~i~q~~~~v~~~~-----~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~ 318 (513)
T COG0513 244 LKKIKQFYLEVESEE-----EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEK 318 (513)
T ss_pred ccCceEEEEEeCCHH-----HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHH
Confidence 355555555544433 234555677777777789999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccc-cHHHHHHhh
Q 036378 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI-TYFRLRSLM 538 (815)
Q Consensus 468 F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~-d~~~l~~~~ 538 (815)
|++|+.+||||||+++||||+|+|.+|||||+|.+.++|+||+||+||.|+.|.++.|+++. |...++.+.
T Consensus 319 F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie 390 (513)
T COG0513 319 FKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIE 390 (513)
T ss_pred HHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 777777664
No 13
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.6e-52 Score=442.39 Aligned_cols=345 Identities=21% Similarity=0.278 Sum_probs=291.1
Q ss_pred cccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc--
Q 036378 163 YRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-- 240 (815)
Q Consensus 163 ~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-- 240 (815)
....|++.+++.++++.+.. .||..|+|+|+.|||..++.+|+|.++.||||||++|++|++..
T Consensus 243 plrnwEE~~~P~e~l~~I~~--------------~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~Is 308 (673)
T KOG0333|consen 243 PLRNWEESGFPLELLSVIKK--------------PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWIS 308 (673)
T ss_pred cccChhhcCCCHHHHHHHHh--------------cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHH
Confidence 44789999999999998888 69999999999999999999999999999999999999998732
Q ss_pred -------------CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhh
Q 036378 241 -------------PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL 302 (815)
Q Consensus 241 -------------~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~ 302 (815)
++.++|+.||++|++|+.++-.++ ++...+.++.+.++..-+ +..| |+|+|+||++|.
T Consensus 309 slP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fq---ls~g-ceiviatPgrLi 384 (673)
T KOG0333|consen 309 SLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQ---LSMG-CEIVIATPGRLI 384 (673)
T ss_pred cCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhh---hhcc-ceeeecCchHHH
Confidence 788999999999999998887763 344555666666554333 3445 999999999999
Q ss_pred chhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcc---------------------cceeEeeecc
Q 036378 303 NADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLN---------------------VECILAMTAT 361 (815)
Q Consensus 303 ~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~---------------------~~~vl~lSAT 361 (815)
+.+....+- +.++.+||+||||+|.++ +|.|+|..++..+...... -.|.++||||
T Consensus 385 d~Lenr~lv-l~qctyvvldeadrmiDm--gfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftat 461 (673)
T KOG0333|consen 385 DSLENRYLV-LNQCTYVVLDEADRMIDM--GFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTAT 461 (673)
T ss_pred HHHHHHHHH-hccCceEeccchhhhhcc--cccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecC
Confidence 988777776 889999999999999999 8999999986654322111 1689999999
Q ss_pred cChhHHHHHHHHhcCCccceeecccc-CCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHH
Q 036378 362 ATTTTLRDVMSALEIPLSNLIQKAQL-RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISR 440 (815)
Q Consensus 362 ~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~ 440 (815)
.++.+...+..+|..+....+..... .+-+...|....+..+ ..+|..+++.....++|||+|+++.|+.||+
T Consensus 462 m~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k------~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk 535 (673)
T KOG0333|consen 462 MPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEK------RKKLIEILESNFDPPIIIFVNTKKGADALAK 535 (673)
T ss_pred CChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHH------HHHHHHHHHhCCCCCEEEEEechhhHHHHHH
Confidence 99999988888888776555433222 2334445555444433 3445566666678899999999999999999
Q ss_pred HHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCc
Q 036378 441 YLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLS 520 (815)
Q Consensus 441 ~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g 520 (815)
.|.+.|+.+..|||+-++++|..++..|++|..+||||||++|||||+|||.+||||||++++++|+|||||+||+|+.|
T Consensus 536 ~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~G 615 (673)
T KOG0333|consen 536 ILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSG 615 (673)
T ss_pred HHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccccHHHH
Q 036378 521 YCHLFLDDITYFRL 534 (815)
Q Consensus 521 ~~i~l~~~~d~~~l 534 (815)
.++.|++++|-..+
T Consensus 616 taiSflt~~dt~v~ 629 (673)
T KOG0333|consen 616 TAISFLTPADTAVF 629 (673)
T ss_pred eeEEEeccchhHHH
Confidence 99999999985433
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.7e-52 Score=469.44 Aligned_cols=342 Identities=18% Similarity=0.254 Sum_probs=273.3
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|+++++++.+++++.. +||..|+|+|++||+.++.|+|++++||||||||++|++|++..
T Consensus 8 ~~f~~~~l~~~l~~~l~~--------------~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~ 73 (423)
T PRK04837 8 QKFSDFALHPQVVEALEK--------------KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSH 73 (423)
T ss_pred CCHhhCCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhc
Confidence 578999999999999998 79999999999999999999999999999999999999999742
Q ss_pred ---------CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhh
Q 036378 241 ---------PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306 (815)
Q Consensus 241 ---------~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~ 306 (815)
+.++|||+||++|+.|+++.+... +....+.++.... ...+.+. ++++|+|+||++|.+.+.
T Consensus 74 ~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~---~~~~~l~-~~~~IlV~TP~~l~~~l~ 149 (423)
T PRK04837 74 PAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYD---KQLKVLE-SGVDILIGTTGRLIDYAK 149 (423)
T ss_pred ccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHH---HHHHHhc-CCCCEEEECHHHHHHHHH
Confidence 357999999999999998876642 3344444444332 2333444 358999999999988766
Q ss_pred hhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhc--ccceeEeeecccChhHHHHHHHHhcCCccceeec
Q 036378 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARL--NVECILAMTATATTTTLRDVMSALEIPLSNLIQK 384 (815)
Q Consensus 307 ~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~--~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 384 (815)
...+. +.++++|||||||++++| +|......+ ++... ...+.+++|||++..+...+...+..+....+..
T Consensus 150 ~~~~~-l~~v~~lViDEad~l~~~--~f~~~i~~i----~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~ 222 (423)
T PRK04837 150 QNHIN-LGAIQVVVLDEADRMFDL--GFIKDIRWL----FRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEP 222 (423)
T ss_pred cCCcc-cccccEEEEecHHHHhhc--ccHHHHHHH----HHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcC
Confidence 55555 789999999999999998 576666555 33333 2346789999999988877777776554333221
Q ss_pred cc-cCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 036378 385 AQ-LRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSR 463 (815)
Q Consensus 385 ~~-~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~ 463 (815)
.. ...++...+..... ......+..++......+++|||+++..|+.+++.|...|+.+..+||+|++++|..
T Consensus 223 ~~~~~~~i~~~~~~~~~------~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 223 EQKTGHRIKEELFYPSN------EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred CCcCCCceeEEEEeCCH------HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHH
Confidence 11 12233322222211 122333444555555678999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 464 IQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 464 i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
++++|++|+++|||||++++||||+|+|++|||||+|.+.++|+||+||+||+|+.|.|++|++++|...++.+
T Consensus 297 ~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i 370 (423)
T PRK04837 297 ILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAI 370 (423)
T ss_pred HHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887766654
No 15
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-52 Score=414.43 Aligned_cols=353 Identities=20% Similarity=0.291 Sum_probs=293.0
Q ss_pred CCcccccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH
Q 036378 159 GKLSYRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 159 ~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l 238 (815)
+.+....+|++.++.+++++.+.+ +||++|..+|+.||+.|+.|+|+++++..|+|||.+|-+.++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~--------------yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vl 86 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYA--------------YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVL 86 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHH--------------hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeee
Confidence 344555789999999999999999 899999999999999999999999999999999999887776
Q ss_pred Hc------CCcEEEEcccHHHHHHHHHhcCCCce--eeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhh
Q 036378 239 IL------PGLTLVVCPLVALMIDQLRHLPPVIH--GGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310 (815)
Q Consensus 239 ~~------~~~~lVl~P~~~L~~q~~~~l~~~~~--~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~ 310 (815)
.. ..++||++|||+|+.|+.+.+..... ....+...++....+.++.+..| .+++.+||+++++......+
T Consensus 87 q~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G-~hvVsGtPGrv~dmikr~~L 165 (400)
T KOG0328|consen 87 QSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYG-QHVVSGTPGRVLDMIKRRSL 165 (400)
T ss_pred eecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhccc-ceEeeCCCchHHHHHHhccc
Confidence 43 56899999999999999888876211 11112222223333345555666 79999999999999888887
Q ss_pred hhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCC
Q 036378 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDN 390 (815)
Q Consensus 311 ~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 390 (815)
. ...+.++|+||||.|++- +|......+ ++..++..|++++|||.+.++.+...+++..|....+........
T Consensus 166 ~-tr~vkmlVLDEaDemL~k--gfk~Qiydi----yr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlE 238 (400)
T KOG0328|consen 166 R-TRAVKMLVLDEADEMLNK--GFKEQIYDI----YRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLE 238 (400)
T ss_pred c-ccceeEEEeccHHHHHHh--hHHHHHHHH----HHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchh
Confidence 7 789999999999999875 666655544 777888999999999999999988887777766555544433322
Q ss_pred -eeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHh
Q 036378 391 -LQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFC 469 (815)
Q Consensus 391 -l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~ 469 (815)
+...+...+. ...+.+.+..+...+.-.+.++||||++.+++|.+.+++.++.+...||+|++++|++++++|+
T Consensus 239 gIKqf~v~ve~-----EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFR 313 (400)
T KOG0328|consen 239 GIKQFFVAVEK-----EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFR 313 (400)
T ss_pred hhhhheeeech-----hhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhh
Confidence 3222222211 1123456677888888899999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 470 SNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 470 ~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
+|+.+||++|++.+||||+|.|.+|||||+|.+.+.|+||+||.||.|+.|.++-|+..+|+..++.+.
T Consensus 314 sg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdie 382 (400)
T KOG0328|consen 314 SGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIE 382 (400)
T ss_pred cCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888764
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.5e-51 Score=467.31 Aligned_cols=341 Identities=22% Similarity=0.287 Sum_probs=273.9
Q ss_pred ccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----
Q 036378 166 TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----- 240 (815)
Q Consensus 166 ~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~----- 240 (815)
+|+++++++++++++.+ +||..|||+|+++|+.+++|+|+|+++|||||||+||++|++..
T Consensus 2 ~f~~l~l~~~l~~~l~~--------------~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~ 67 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE--------------QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67 (456)
T ss_pred CHHHcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcc
Confidence 68899999999999999 79999999999999999999999999999999999999999854
Q ss_pred -------CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhh
Q 036378 241 -------PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308 (815)
Q Consensus 241 -------~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~ 308 (815)
..++|||+||++|+.|+.+.+..+ +....+.++..... +...+. +.++|+|+||++|.+.....
T Consensus 68 ~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~-~~~~IiV~TP~rL~~~~~~~ 143 (456)
T PRK10590 68 PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINP---QMMKLR-GGVDVLVATPGRLLDLEHQN 143 (456)
T ss_pred cccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHH---HHHHHc-CCCcEEEEChHHHHHHHHcC
Confidence 136999999999999999988763 23334444443332 233333 46899999999998876665
Q ss_pred hhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceee-cccc
Q 036378 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQ-KAQL 387 (815)
Q Consensus 309 ~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~ 387 (815)
.+. +.++++|||||||++++| +|...+..+ +.......|++++|||++.++.......+..+....+. ....
T Consensus 144 ~~~-l~~v~~lViDEah~ll~~--~~~~~i~~i----l~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~ 216 (456)
T PRK10590 144 AVK-LDQVEILVLDEADRMLDM--GFIHDIRRV----LAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTA 216 (456)
T ss_pred Ccc-cccceEEEeecHHHHhcc--ccHHHHHHH----HHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccccc
Confidence 554 789999999999999998 566555544 44555667899999999988766565655544332221 1222
Q ss_pred CCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHH
Q 036378 388 RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467 (815)
Q Consensus 388 ~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~ 467 (815)
..++...+....... ....+..++......+++|||+++..++.+++.|...++.+..+||+|++.+|.++++.
T Consensus 217 ~~~i~~~~~~~~~~~------k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~ 290 (456)
T PRK10590 217 SEQVTQHVHFVDKKR------KRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALAD 290 (456)
T ss_pred ccceeEEEEEcCHHH------HHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
Confidence 333433333322211 12333444555566789999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 468 F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
|++|+++|||||+++++|||+|+|++||||++|.++++|+||+||+||+|..|.|++|+..+|...++.+
T Consensus 291 F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~i 360 (456)
T PRK10590 291 FKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360 (456)
T ss_pred HHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887766654
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.9e-51 Score=468.66 Aligned_cols=342 Identities=18% Similarity=0.220 Sum_probs=279.5
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|+++++++.+++++.. +||..|+|+|++||+.+++|+|+++++|||||||++|++|++..
T Consensus 4 ~~f~~l~l~~~l~~~l~~--------------~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~ 69 (460)
T PRK11776 4 TAFSTLPLPPALLANLNE--------------LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK 69 (460)
T ss_pred CChhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc
Confidence 478999999999999999 79999999999999999999999999999999999999999864
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCC------ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhh
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPV------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~------~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~ 312 (815)
..++||++||++|+.|+.+.++.. +....+.++..... +.+.+. ..++|+|+||++|.+.+....+.
T Consensus 70 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~---~~~~l~-~~~~IvV~Tp~rl~~~l~~~~~~- 144 (460)
T PRK11776 70 RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGP---QIDSLE-HGAHIIVGTPGRILDHLRKGTLD- 144 (460)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHH---HHHHhc-CCCCEEEEChHHHHHHHHcCCcc-
Confidence 347999999999999999887752 33344445544433 334444 35899999999999877665554
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCee
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQ 392 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 392 (815)
+.++++|||||||++++| +|.+.+..+ +...+...|++++|||++..........+..+....+........+.
T Consensus 145 l~~l~~lViDEad~~l~~--g~~~~l~~i----~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~ 218 (460)
T PRK11776 145 LDALNTLVLDEADRMLDM--GFQDAIDAI----IRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIE 218 (460)
T ss_pred HHHCCEEEEECHHHHhCc--CcHHHHHHH----HHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCee
Confidence 778999999999999988 677776555 45556677999999999988776666666554433333322333344
Q ss_pred EEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 036378 393 LSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK 472 (815)
Q Consensus 393 ~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~ 472 (815)
..+....... ....+..++......+++|||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+
T Consensus 219 ~~~~~~~~~~------k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~ 292 (460)
T PRK11776 219 QRFYEVSPDE------RLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRS 292 (460)
T ss_pred EEEEEeCcHH------HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 3333332221 2344455555566778999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 473 IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 473 ~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
.+|||||+++++|||+|++++|||||+|.+.++|+||+||+||+|+.|.|++|+++.|...++.+
T Consensus 293 ~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i 357 (460)
T PRK11776 293 CSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAI 357 (460)
T ss_pred CcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887766554
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-50 Score=470.22 Aligned_cols=343 Identities=18% Similarity=0.229 Sum_probs=276.3
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|+++++.+.+++.|.+ +||..|+|+|+++|+.+++|+|+++++|||||||++|++|++..
T Consensus 9 ~~f~~l~l~~~l~~~L~~--------------~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~ 74 (572)
T PRK04537 9 LTFSSFDLHPALLAGLES--------------AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSR 74 (572)
T ss_pred CChhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhc
Confidence 368999999999999998 79999999999999999999999999999999999999999752
Q ss_pred ---------CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhh
Q 036378 241 ---------PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306 (815)
Q Consensus 241 ---------~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~ 306 (815)
..++|||+||++|+.|+++.+.++ +....+.++...... .+.+. +.++|||+||++|.+.+.
T Consensus 75 ~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q---~~~l~-~~~dIiV~TP~rL~~~l~ 150 (572)
T PRK04537 75 PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ---RELLQ-QGVDVIIATPGRLIDYVK 150 (572)
T ss_pred ccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHH---HHHHh-CCCCEEEECHHHHHHHHH
Confidence 368999999999999999988763 334455555544332 22333 358999999999998766
Q ss_pred hhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcc--cceeEeeecccChhHHHHHHHHhcCCccceeec
Q 036378 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLN--VECILAMTATATTTTLRDVMSALEIPLSNLIQK 384 (815)
Q Consensus 307 ~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~--~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 384 (815)
......+..+++|||||||++++| +|...+..+ ++.... ..|++++|||++..+...+...+..+....+..
T Consensus 151 ~~~~~~l~~v~~lViDEAh~lld~--gf~~~i~~i----l~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~ 224 (572)
T PRK04537 151 QHKVVSLHACEICVLDEADRMFDL--GFIKDIRFL----LRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET 224 (572)
T ss_pred hccccchhheeeeEecCHHHHhhc--chHHHHHHH----HHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecc
Confidence 543333678999999999999988 677666555 333222 568999999999998887777776554333322
Q ss_pred cc-cCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 036378 385 AQ-LRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSR 463 (815)
Q Consensus 385 ~~-~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~ 463 (815)
.. ...++...+...... ..+..+..++......+++|||+++..++.|++.|...++.+..+||+|++.+|.+
T Consensus 225 ~~~~~~~i~q~~~~~~~~------~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~ 298 (572)
T PRK04537 225 ETITAARVRQRIYFPADE------EKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRES 298 (572)
T ss_pred ccccccceeEEEEecCHH------HHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 21 122333333322211 12333445555566789999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 464 IQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 464 i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
++++|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+||+||.|+.|.|++|+++.+...++.+
T Consensus 299 il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i 372 (572)
T PRK04537 299 LLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDI 372 (572)
T ss_pred HHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887766655
No 19
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.5e-51 Score=470.10 Aligned_cols=344 Identities=20% Similarity=0.291 Sum_probs=267.7
Q ss_pred ccccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH--
Q 036378 162 SYRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI-- 239 (815)
Q Consensus 162 ~~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~-- 239 (815)
+...+|+++++++.+++.|.. .||..|||+|.++|+.++.|+|+++++|||||||++|++|++.
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~--------------~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l 183 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLET--------------AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRC 183 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHH
Confidence 345789999999999999988 7999999999999999999999999999999999999999874
Q ss_pred -----------cCCcEEEEcccHHHHHHHHHhcCCCc-----eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhc
Q 036378 240 -----------LPGLTLVVCPLVALMIDQLRHLPPVI-----HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303 (815)
Q Consensus 240 -----------~~~~~lVl~P~~~L~~q~~~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~ 303 (815)
.++++|||+||++|+.|+.+.+..+. +...+.++.. ...+...+..| ++|+|+||++|.+
T Consensus 184 ~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~---~~~q~~~l~~~-~~IiV~TPgrL~~ 259 (518)
T PLN00206 184 CTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDA---MPQQLYRIQQG-VELIVGTPGRLID 259 (518)
T ss_pred HhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcc---hHHHHHHhcCC-CCEEEECHHHHHH
Confidence 24679999999999999877766532 2233333322 23334455555 8999999999988
Q ss_pred hhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceee
Q 036378 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQ 383 (815)
Q Consensus 304 ~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~ 383 (815)
.+...... +.++++|||||||+|++| +|++.+..+... .+..|++++|||++.++.......+..+. .+..
T Consensus 260 ~l~~~~~~-l~~v~~lViDEad~ml~~--gf~~~i~~i~~~-----l~~~q~l~~SATl~~~v~~l~~~~~~~~~-~i~~ 330 (518)
T PLN00206 260 LLSKHDIE-LDNVSVLVLDEVDCMLER--GFRDQVMQIFQA-----LSQPQVLLFSATVSPEVEKFASSLAKDII-LISI 330 (518)
T ss_pred HHHcCCcc-chheeEEEeecHHHHhhc--chHHHHHHHHHh-----CCCCcEEEEEeeCCHHHHHHHHHhCCCCE-EEEe
Confidence 77666554 789999999999999998 688887766332 24679999999999887654444433221 1111
Q ss_pred ccccC--CCeeEEEEecCCccchhhhhhHHHHHHHHhhc--cccceEEEecchHHHHHHHHHHhh-CCCcEEEecCCCCH
Q 036378 384 KAQLR--DNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS--KHYYILQISGKHFETDLISRYLCD-NSISVKSYHSGIPA 458 (815)
Q Consensus 384 ~~~~~--~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~ivf~~s~~~~e~l~~~L~~-~g~~v~~~h~~~~~ 458 (815)
..... ..+...+.......+ ...+..++... ...+++|||+++..++.+++.|.. .|+.+..+||+|+.
T Consensus 331 ~~~~~~~~~v~q~~~~~~~~~k------~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~ 404 (518)
T PLN00206 331 GNPNRPNKAVKQLAIWVETKQK------KQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSM 404 (518)
T ss_pred CCCCCCCcceeEEEEeccchhH------HHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCH
Confidence 11112 222222222222111 11222333222 235799999999999999999975 69999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 459 KDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 459 ~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
.+|..+++.|++|+++|||||++++||||+|+|++|||||+|.++++|+||+|||||.|..|.|++|++++|...+..+.
T Consensus 405 ~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 405 KERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred HHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998876655543
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.5e-50 Score=469.67 Aligned_cols=344 Identities=20% Similarity=0.251 Sum_probs=278.1
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|++++++++++++|.+ +||..|+|+|.++|+.++.|+|+|++||||||||++|++|++..
T Consensus 6 ~~f~~l~L~~~ll~al~~--------------~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~ 71 (629)
T PRK11634 6 TTFADLGLKAPILEALND--------------LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE 71 (629)
T ss_pred CCHhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc
Confidence 368899999999999998 79999999999999999999999999999999999999998743
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCC------ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhh
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPV------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~------~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~ 312 (815)
.+++|||+||++|+.|+.+.+..+ +....+.++... ..++..+.. .++|||+||++|.+.+....+.
T Consensus 72 ~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~---~~q~~~l~~-~~~IVVgTPgrl~d~l~r~~l~- 146 (629)
T PRK11634 72 LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRY---DVQLRALRQ-GPQIVVGTPGRLLDHLKRGTLD- 146 (629)
T ss_pred cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCH---HHHHHHhcC-CCCEEEECHHHHHHHHHcCCcc-
Confidence 458999999999999998887652 233344444433 334444544 4899999999999887766655
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeecc-ccCCCe
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA-QLRDNL 391 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~l 391 (815)
+.++++|||||||++++| +|..+...+ +...+...|+++||||++..+......++..+....+... ...+++
T Consensus 147 l~~l~~lVlDEAd~ml~~--gf~~di~~I----l~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i 220 (629)
T PRK11634 147 LSKLSGLVLDEADEMLRM--GFIEDVETI----MAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDI 220 (629)
T ss_pred hhhceEEEeccHHHHhhc--ccHHHHHHH----HHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCce
Confidence 789999999999999988 677666555 4555667799999999988877656566554433222221 122333
Q ss_pred eEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC
Q 036378 392 QLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471 (815)
Q Consensus 392 ~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g 471 (815)
.......... .....+..++.......++|||+++..++.+++.|...|+.+..+||+|++.+|.+++++|++|
T Consensus 221 ~q~~~~v~~~------~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G 294 (629)
T PRK11634 221 SQSYWTVWGM------RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294 (629)
T ss_pred EEEEEEechh------hHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC
Confidence 3332222211 1223344555555567899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhh
Q 036378 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539 (815)
Q Consensus 472 ~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~ 539 (815)
+++|||||+++++|||+|+|++|||||+|.++++|+||+||+||.|+.|.|++|+++.|...++.+..
T Consensus 295 ~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~ 362 (629)
T PRK11634 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 362 (629)
T ss_pred CCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877777653
No 21
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-52 Score=437.36 Aligned_cols=350 Identities=19% Similarity=0.248 Sum_probs=289.3
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|.+++|+..+++++.. +||..|||+|..+||..+-|+|+.++|.||||||.+|++|+|.+
T Consensus 181 ~sF~~mNLSRPlLka~~~--------------lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYr 246 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACST--------------LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYR 246 (691)
T ss_pred hhHHhcccchHHHHHHHh--------------cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcC
Confidence 478899999999999998 89999999999999999999999999999999999999999854
Q ss_pred -----CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhh
Q 036378 241 -----PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310 (815)
Q Consensus 241 -----~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~ 310 (815)
..+|||++|||+|+.|++...++. +..+...+++. ...+...++.+ ++|||+||+||.+++....-
T Consensus 247 Pk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~---lk~QE~~LRs~-PDIVIATPGRlIDHlrNs~s 322 (691)
T KOG0338|consen 247 PKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLD---LKAQEAVLRSR-PDIVIATPGRLIDHLRNSPS 322 (691)
T ss_pred cccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCcc---HHHHHHHHhhC-CCEEEecchhHHHHhccCCC
Confidence 357999999999999988877763 22333334443 44444455555 99999999999999877766
Q ss_pred hhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeecccc-CC
Q 036378 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQL-RD 389 (815)
Q Consensus 311 ~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~ 389 (815)
..+.+|..+|+||||+|++- +|...+..| ++..+..+|.++||||++.++...+.-.|..|....+..... .+
T Consensus 323 f~ldsiEVLvlDEADRMLee--gFademnEi----i~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~ 396 (691)
T KOG0338|consen 323 FNLDSIEVLVLDEADRMLEE--GFADEMNEI----IRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAP 396 (691)
T ss_pred ccccceeEEEechHHHHHHH--HHHHHHHHH----HHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccch
Confidence 66889999999999999986 677777666 667778889999999999998887777776665544433222 23
Q ss_pred CeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHh
Q 036378 390 NLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFC 469 (815)
Q Consensus 390 ~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~ 469 (815)
.+...+..........+..++ ..++...-...++||+.|++.|..+.-.|--.|+.+.-+||.|++.+|.+.++.|+
T Consensus 397 ~LtQEFiRIR~~re~dRea~l---~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk 473 (691)
T KOG0338|consen 397 KLTQEFIRIRPKREGDREAML---ASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFK 473 (691)
T ss_pred hhhHHHheeccccccccHHHH---HHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHH
Confidence 333333332222222222322 34555555788999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhhcC
Q 036378 470 SNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSD 541 (815)
Q Consensus 470 ~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~~~ 541 (815)
+++++||||||+++||+||++|.+||||++|.+.+.|+||+||+.|+|+.|.++.|+.+.|...++.+++..
T Consensus 474 ~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 474 KEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred hccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999988664
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.7e-50 Score=456.59 Aligned_cols=343 Identities=20% Similarity=0.250 Sum_probs=276.6
Q ss_pred ccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----
Q 036378 166 TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----- 240 (815)
Q Consensus 166 ~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~----- 240 (815)
+|+++++.+++++.+.+ +||..|+++|.++|+.+++|+|+++++|||+|||+||++|++..
T Consensus 2 ~f~~l~l~~~l~~~l~~--------------~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~ 67 (434)
T PRK11192 2 TFSELELDESLLEALQD--------------KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP 67 (434)
T ss_pred CHhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcc
Confidence 68999999999999999 79999999999999999999999999999999999999999853
Q ss_pred -----CCcEEEEcccHHHHHHHHHhcCC-----CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhh
Q 036378 241 -----PGLTLVVCPLVALMIDQLRHLPP-----VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310 (815)
Q Consensus 241 -----~~~~lVl~P~~~L~~q~~~~l~~-----~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~ 310 (815)
..++||++||++|+.|+.+.+.. .+....+.++........ ...++++|+|+||++|.+.+....+
T Consensus 68 ~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~----~l~~~~~IlV~Tp~rl~~~~~~~~~ 143 (434)
T PRK11192 68 RRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAE----VFSENQDIVVATPGRLLQYIKEENF 143 (434)
T ss_pred ccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHH----HhcCCCCEEEEChHHHHHHHHcCCc
Confidence 35899999999999998887665 234455555555443332 2234689999999999987666555
Q ss_pred hhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeec--cccC
Q 036378 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQK--AQLR 388 (815)
Q Consensus 311 ~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~~ 388 (815)
. +.++++|||||||++++| +|...+..+ ........|+++||||++.....++...+......+... ...+
T Consensus 144 ~-~~~v~~lViDEah~~l~~--~~~~~~~~i----~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 216 (434)
T PRK11192 144 D-CRAVETLILDEADRMLDM--GFAQDIETI----AAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRER 216 (434)
T ss_pred C-cccCCEEEEECHHHHhCC--CcHHHHHHH----HHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccc
Confidence 4 678999999999999998 677777665 334455678999999998776777776654332222111 1122
Q ss_pred CCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHH
Q 036378 389 DNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELF 468 (815)
Q Consensus 389 ~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F 468 (815)
.++...+...... ......+..++......+++|||+++..++.+++.|...|+.+..+||+|++.+|..++++|
T Consensus 217 ~~i~~~~~~~~~~-----~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f 291 (434)
T PRK11192 217 KKIHQWYYRADDL-----EHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRL 291 (434)
T ss_pred cCceEEEEEeCCH-----HHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence 3333333322211 12233444555555667899999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 469 CSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 469 ~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
++|+++|||||+++++|||+|+|++|||||+|.+.+.|+||+||+||+|..|.|++|++..|...++.+.
T Consensus 292 ~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 292 TDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred hCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887777653
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-49 Score=453.25 Aligned_cols=344 Identities=19% Similarity=0.296 Sum_probs=271.4
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
..|.++++++.++++|.+ +||..|+++|.++|+.+++|+|+++.+|||||||++|++|++..
T Consensus 87 ~~f~~~~l~~~l~~~l~~--------------~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~ 152 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHD--------------LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQT 152 (475)
T ss_pred CCHhHCCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhc
Confidence 367888999999999998 79999999999999999999999999999999999999999743
Q ss_pred ---------CCcEEEEcccHHHHHHHHHhcCCCc-----eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhh
Q 036378 241 ---------PGLTLVVCPLVALMIDQLRHLPPVI-----HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306 (815)
Q Consensus 241 ---------~~~~lVl~P~~~L~~q~~~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~ 306 (815)
..++|||+||++|+.|+.+.+..+. ....+.++. +.....+.+..+.++|+|+||++|.....
T Consensus 153 ~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~---~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~ 229 (475)
T PRK01297 153 PPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGM---DFDKQLKQLEARFCDILVATPGRLLDFNQ 229 (475)
T ss_pred CcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccC---ChHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 3579999999999999999887632 223333332 33344455666779999999999987654
Q ss_pred hhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccc
Q 036378 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQ 386 (815)
Q Consensus 307 ~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~ 386 (815)
..... +.++++|||||||++.+| +|.+.+..++... ......|++++|||.+..+...+..++..+....+....
T Consensus 230 ~~~~~-l~~l~~lViDEah~l~~~--~~~~~l~~i~~~~--~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~ 304 (475)
T PRK01297 230 RGEVH-LDMVEVMVLDEADRMLDM--GFIPQVRQIIRQT--PRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN 304 (475)
T ss_pred cCCcc-cccCceEEechHHHHHhc--ccHHHHHHHHHhC--CCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc
Confidence 43333 779999999999999988 6777776663221 112346899999999988877666665544322221111
Q ss_pred -cCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 036378 387 -LRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQ 465 (815)
Q Consensus 387 -~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~ 465 (815)
...++...+....... ....+..++......+++|||++++.++.+++.|...|+.+..+||+|+.++|.+++
T Consensus 305 ~~~~~~~~~~~~~~~~~------k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~ 378 (475)
T PRK01297 305 VASDTVEQHVYAVAGSD------KYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTL 378 (475)
T ss_pred CCCCcccEEEEEecchh------HHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 1223333333222211 122334445555567899999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHH
Q 036378 466 ELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536 (815)
Q Consensus 466 ~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~ 536 (815)
+.|++|+++|||||+++++|||+|++++||+|++|.+.++|+||+|||||.|+.|.+++|++++|...+..
T Consensus 379 ~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~ 449 (475)
T PRK01297 379 EGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPE 449 (475)
T ss_pred HHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887655544
No 24
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.7e-50 Score=427.67 Aligned_cols=351 Identities=19% Similarity=0.262 Sum_probs=283.0
Q ss_pred CcccccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH
Q 036378 160 KLSYRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 160 ~~~~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~ 239 (815)
+......|++..+++..++++.+ +||..+|++|+..|+.++.|+|+++.|.||+|||++|++|++.
T Consensus 77 s~~~~~~f~~~~LS~~t~kAi~~--------------~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie 142 (543)
T KOG0342|consen 77 SITTTFRFEEGSLSPLTLKAIKE--------------MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIE 142 (543)
T ss_pred chhhhhHhhccccCHHHHHHHHh--------------cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHH
Confidence 34445688999999999999999 8999999999999999999999999999999999999999984
Q ss_pred c----------CCcEEEEcccHHHHHHHHHhcCCCcee---eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhh
Q 036378 240 L----------PGLTLVVCPLVALMIDQLRHLPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306 (815)
Q Consensus 240 ~----------~~~~lVl~P~~~L~~q~~~~l~~~~~~---~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~ 306 (815)
. +-.+|||+|||+|+.|.+.++++.+.. ..+...+++.......+++.. .++|+|+||+||.+++.
T Consensus 143 ~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlq 221 (543)
T KOG0342|consen 143 LLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQ 221 (543)
T ss_pred HHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhh
Confidence 3 446999999999999999999874332 222233344444444555666 59999999999999877
Q ss_pred hhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccc
Q 036378 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQ 386 (815)
Q Consensus 307 ~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~ 386 (815)
......+.++.++|+||||++++. +|+.++..|+. ..+...|.+++|||.+.+|.....-.|.- .+..+....
T Consensus 222 Nt~~f~~r~~k~lvlDEADrlLd~--GF~~di~~Ii~----~lpk~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d 294 (543)
T KOG0342|consen 222 NTSGFLFRNLKCLVLDEADRLLDI--GFEEDVEQIIK----ILPKQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDD 294 (543)
T ss_pred cCCcchhhccceeEeecchhhhhc--ccHHHHHHHHH----hccccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCC
Confidence 665554667899999999999999 89999988843 34467799999999999987755555544 333332221
Q ss_pred cC-----CCeeEEEEecCCccchhhhhhHHHHHHHH-hhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHH
Q 036378 387 LR-----DNLQLSVSLSGNNRQNERSAYVDEVFSFH-RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKD 460 (815)
Q Consensus 387 ~~-----~~l~~~v~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~ 460 (815)
.. ..+...+........ +. .+..++ +.....+++|||.|...+..+++.|+...++|..+||++++..
T Consensus 295 ~~~~~The~l~Qgyvv~~~~~~-----f~-ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~k 368 (543)
T KOG0342|consen 295 GGERETHERLEQGYVVAPSDSR-----FS-LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNK 368 (543)
T ss_pred CCCcchhhcccceEEeccccch-----HH-HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccc
Confidence 11 112222222221111 12 222333 3344499999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 461 RSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 461 R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
|..+..+|++.+.-||||||+++||+|+|+|++||+||+|.+.++|+||+||+||.|+.|.+++|+.+.+...++.+-
T Consensus 369 RT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 369 RTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred cchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888764
No 25
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.9e-48 Score=438.90 Aligned_cols=344 Identities=20% Similarity=0.282 Sum_probs=272.2
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
..+|+++++.+.+.+++.. +||..|+|+|.++|+.+++|+|+++++|||||||++|++|++..
T Consensus 27 ~~~~~~l~l~~~~~~~l~~--------------~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~ 92 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYS--------------YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY 92 (401)
T ss_pred cCCHhhCCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC
Confidence 4688999999999999988 89999999999999999999999999999999999999998853
Q ss_pred ---CCcEEEEcccHHHHHHHHHhcCCCc-----eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhh
Q 036378 241 ---PGLTLVVCPLVALMIDQLRHLPPVI-----HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312 (815)
Q Consensus 241 ---~~~~lVl~P~~~L~~q~~~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~ 312 (815)
+.++|||+|+++|+.|+.+.+.... ......++.. .......+..+ ++|+|+||++|.+.+......
T Consensus 93 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~- 167 (401)
T PTZ00424 93 DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTV---VRDDINKLKAG-VHMVVGTPGRVYDMIDKRHLR- 167 (401)
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcC---HHHHHHHHcCC-CCEEEECcHHHHHHHHhCCcc-
Confidence 5679999999999999988776532 1222222222 22334444444 799999999998876655444
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccc-cCCCe
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQ-LRDNL 391 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l 391 (815)
+.++++|||||||++.++ +|+..+..+ ++...+..|++++|||++..........+..+....+.... ....+
T Consensus 168 l~~i~lvViDEah~~~~~--~~~~~~~~i----~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (401)
T PTZ00424 168 VDDLKLFILDEADEMLSR--GFKGQIYDV----FKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGI 241 (401)
T ss_pred cccccEEEEecHHHHHhc--chHHHHHHH----HhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCc
Confidence 789999999999999987 566554444 55566778999999999988776665555443322222211 11222
Q ss_pred eEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC
Q 036378 392 QLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471 (815)
Q Consensus 392 ~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g 471 (815)
...+...... ......+..+.......++++||++++.++.+++.|...++.+..+||+|+.++|..+++.|++|
T Consensus 242 ~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g 316 (401)
T PTZ00424 242 RQFYVAVEKE-----EWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG 316 (401)
T ss_pred eEEEEecChH-----HHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 2222221111 11223334455555667899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 472 ~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|+.|.|++|++++|...++.+
T Consensus 317 ~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 317 STRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred CCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988877765
No 26
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-49 Score=422.97 Aligned_cols=338 Identities=20% Similarity=0.283 Sum_probs=280.9
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
..|+++.++...++.|.+ -+|..+|.+|+++|+..|.|+|+|..+.|||||||+|++|++..
T Consensus 69 ~kF~dlpls~~t~kgLke--------------~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~ 134 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKE--------------AKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL 134 (758)
T ss_pred hhHHhCCCchHHHHhHhh--------------cCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc
Confidence 578999999999999999 49999999999999999999999999999999999999999854
Q ss_pred ------CCcEEEEcccHHHHHHHHHhcCCCc-----eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhh
Q 036378 241 ------PGLTLVVCPLVALMIDQLRHLPPVI-----HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309 (815)
Q Consensus 241 ------~~~~lVl~P~~~L~~q~~~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~ 309 (815)
|--||||+|||+||.|+++.|.+.. .++.+.++.... .+..+-.+++||||||+||+.++..+.
T Consensus 135 kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTPGRLLQHmde~~ 209 (758)
T KOG0343|consen 135 KWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTPGRLLQHMDENP 209 (758)
T ss_pred CCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEechHHHHHHhhhcC
Confidence 4459999999999999999998833 333333333222 222233479999999999999887776
Q ss_pred hhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceee---ccc
Q 036378 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQ---KAQ 386 (815)
Q Consensus 310 ~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~---~~~ 386 (815)
.....++.++|+||||+++++ +|......| +...+..+|.++||||.+..+.....-.+..|....+. ...
T Consensus 210 ~f~t~~lQmLvLDEADR~LDM--GFk~tL~~I----i~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~a 283 (758)
T KOG0343|consen 210 NFSTSNLQMLVLDEADRMLDM--GFKKTLNAI----IENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAA 283 (758)
T ss_pred CCCCCcceEEEeccHHHHHHH--hHHHHHHHH----HHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEecccccc
Confidence 655779999999999999999 777776665 56677788999999999998876555445555443332 123
Q ss_pred cCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhh--CCCcEEEecCCCCHHHHHHH
Q 036378 387 LRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCD--NSISVKSYHSGIPAKDRSRI 464 (815)
Q Consensus 387 ~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~--~g~~v~~~h~~~~~~~R~~i 464 (815)
.+.++...+....... .++.|+.++......+.|||+.|.+++..+++.+.. .|+++..+||+|.+..|.++
T Consensus 284 tP~~L~Q~y~~v~l~~------Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev 357 (758)
T KOG0343|consen 284 TPSNLQQSYVIVPLED------KIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEV 357 (758)
T ss_pred ChhhhhheEEEEehhh------HHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHH
Confidence 4455555554443332 345667778888889999999999999999999986 58899999999999999999
Q ss_pred HHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHH
Q 036378 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFR 533 (815)
Q Consensus 465 ~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~ 533 (815)
+.+|...+.-||+||++++||+|+|.|+|||++|+|.++++|+||+||+.|.+..|.|++++.+.+...
T Consensus 358 ~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 358 YKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred HHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988433
No 27
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-49 Score=409.03 Aligned_cols=345 Identities=22% Similarity=0.319 Sum_probs=282.0
Q ss_pred ccccccc-ccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-
Q 036378 163 YRRTASE-LELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL- 240 (815)
Q Consensus 163 ~~~~~~~-l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~- 240 (815)
..-+|++ ++--++++..+.. .||.+|+|+|.+|||.+|+|.|++.++.||+|||++|++|.+..
T Consensus 217 P~ctFddAFq~~pevmenIkK--------------~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi 282 (629)
T KOG0336|consen 217 PVCTFDDAFQCYPEVMENIKK--------------TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHI 282 (629)
T ss_pred CcCcHHHHHhhhHHHHHHHHh--------------ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeee
Confidence 4455653 5677888888888 69999999999999999999999999999999999999998743
Q ss_pred -----------CCcEEEEcccHHHHHHHHHhcCC----CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchh
Q 036378 241 -----------PGLTLVVCPLVALMIDQLRHLPP----VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305 (815)
Q Consensus 241 -----------~~~~lVl~P~~~L~~q~~~~l~~----~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~ 305 (815)
+..+||++||++|+.|+-....+ +.+..++.+ .+.+..+.+.++.| ++|+++||++|.+..
T Consensus 283 ~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~yg---ggnR~eqie~lkrg-veiiiatPgrlndL~ 358 (629)
T KOG0336|consen 283 DAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYG---GGNRNEQIEDLKRG-VEIIIATPGRLNDLQ 358 (629)
T ss_pred eccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEec---CCCchhHHHHHhcC-ceEEeeCCchHhhhh
Confidence 56799999999999998887776 333344433 34455567777777 999999999999887
Q ss_pred hhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeecc
Q 036378 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA 385 (815)
Q Consensus 306 ~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~ 385 (815)
..+.+. +..+.+||+||||+|+++ +|.|.+.++ +-...+.+|+++.|||++..+......++..+....+..-
T Consensus 359 ~~n~i~-l~siTYlVlDEADrMLDM--gFEpqIrki----lldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsL 431 (629)
T KOG0336|consen 359 MDNVIN-LASITYLVLDEADRMLDM--GFEPQIRKI----LLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSL 431 (629)
T ss_pred hcCeee-eeeeEEEEecchhhhhcc--cccHHHHHH----hhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEeccc
Confidence 666666 889999999999999999 899999887 3456788999999999999999988888877654433221
Q ss_pred ccC--CCeeEEEEecCCccchhhhhhHHHHHHHH-hhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 036378 386 QLR--DNLQLSVSLSGNNRQNERSAYVDEVFSFH-RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS 462 (815)
Q Consensus 386 ~~~--~~l~~~v~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~ 462 (815)
.+. ..+...+....+..+ +..+..+. ......++++||.++..++.|...|.-.|+.+..+||+-.+.+|+
T Consensus 432 dL~a~~sVkQ~i~v~~d~~k------~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE 505 (629)
T KOG0336|consen 432 DLVAVKSVKQNIIVTTDSEK------LEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDRE 505 (629)
T ss_pred ceeeeeeeeeeEEecccHHH------HHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHH
Confidence 111 111112222222221 22222232 334568899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 463 ~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
..++.|++|+++|||||++++||||++||.+|+|||+|.++++|+||+||+||.|+.|.++.|++..|......++
T Consensus 506 ~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 506 MALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELI 581 (629)
T ss_pred HHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987776665
No 28
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-50 Score=402.96 Aligned_cols=350 Identities=19% Similarity=0.235 Sum_probs=287.8
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
...|+++.+.++++..+.+ .||+.|+|+|+++||.++.|+|+|+-+..|+|||.+|.+|.+..
T Consensus 84 G~efEd~~Lkr~LLmgIfe--------------~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~ 149 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFE--------------KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP 149 (459)
T ss_pred CccHHHhhhhHHHHHHHHH--------------hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc
Confidence 4689999999999999999 69999999999999999999999999999999999999999966
Q ss_pred ---CCcEEEEcccHHHHHHHHHhcC---C--CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhh
Q 036378 241 ---PGLTLVVCPLVALMIDQLRHLP---P--VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312 (815)
Q Consensus 241 ---~~~~lVl~P~~~L~~q~~~~l~---~--~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~ 312 (815)
.-+++|++||++||-|..+... + +++.....++.+. .+.+-++. +.++++|+||+|++++.......
T Consensus 150 ~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~l---rDDI~Rl~-~~VH~~vgTPGRIlDL~~KgVa~- 224 (459)
T KOG0326|consen 150 KKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSL---RDDIMRLN-QTVHLVVGTPGRILDLAKKGVAD- 224 (459)
T ss_pred cccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCccc---ccceeeec-CceEEEEcCChhHHHHHhccccc-
Confidence 3469999999999987655554 4 3334444444332 22222333 35999999999999987666555
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCee
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQ 392 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 392 (815)
++.+.++|+||||.+++. +|.+....+ +...+..+|++++|||.+..+...+.+.+..|.............+.
T Consensus 225 ls~c~~lV~DEADKlLs~--~F~~~~e~l----i~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~Gvt 298 (459)
T KOG0326|consen 225 LSDCVILVMDEADKLLSV--DFQPIVEKL----ISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVT 298 (459)
T ss_pred chhceEEEechhhhhhch--hhhhHHHHH----HHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchh
Confidence 889999999999999865 777666555 66677888999999999999999998988877665443332222222
Q ss_pred EEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 036378 393 LSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK 472 (815)
Q Consensus 393 ~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~ 472 (815)
.......+. .++..+..+...+.-.+.++|||+...+|.+|..+.+.|+.+.++|+.|-++.|.+++.+|++|.
T Consensus 299 QyYafV~e~------qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~ 372 (459)
T KOG0326|consen 299 QYYAFVEER------QKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK 372 (459)
T ss_pred hheeeechh------hhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc
Confidence 222222222 22334556777778889999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhhcCCCC
Q 036378 473 IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVD 544 (815)
Q Consensus 473 ~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~~~~~~ 544 (815)
++.|||||.|.||||+++|++|||||+|++.|+|.||+||+||.|..|.++.|++-+|...+.++....+.+
T Consensus 373 crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtE 444 (459)
T KOG0326|consen 373 CRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTE 444 (459)
T ss_pred cceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999988886555433
No 29
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-48 Score=405.69 Aligned_cols=341 Identities=19% Similarity=0.269 Sum_probs=272.0
Q ss_pred cccccccc--HHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 166 TASELELV--EEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 166 ~~~~l~l~--~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
.|++++.+ ++++.++.. +||..+||+|..+||.++.++|+++.++||||||++|++|++..
T Consensus 5 ~~~~l~~~L~~~l~~~l~~--------------~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~r 70 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDE--------------SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYR 70 (567)
T ss_pred chhhcCCCccHHHHHHHHh--------------cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHh
Confidence 45555544 999999999 79999999999999999999999999999999999999999743
Q ss_pred ------CC--cEEEEcccHHHHHHHHHhcCCCc------eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhh
Q 036378 241 ------PG--LTLVVCPLVALMIDQLRHLPPVI------HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306 (815)
Q Consensus 241 ------~~--~~lVl~P~~~L~~q~~~~l~~~~------~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~ 306 (815)
++ -+|||+|||+|+.|+.+.+..+. ....+.++ ......+..++..++.|+||||+||.+.+.
T Consensus 71 r~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG---~~v~~Di~~fkee~~nIlVgTPGRL~di~~ 147 (567)
T KOG0345|consen 71 REAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGG---RSVEEDIKTFKEEGPNILVGTPGRLLDILQ 147 (567)
T ss_pred hccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecC---ccHHHHHHHHHHhCCcEEEeCchhHHHHHh
Confidence 23 58999999999999998887632 23334444 344556666777789999999999998765
Q ss_pred hhhhh-hcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeecc
Q 036378 307 LSIFT-ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA 385 (815)
Q Consensus 307 ~~~~~-~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~ 385 (815)
..... .+..+.++|+||||+++++ +|..+...| +...+..++.=+||||.+.++.......|..+....+...
T Consensus 148 ~~~~~l~~rsLe~LVLDEADrLldm--gFe~~~n~I----Ls~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k 221 (567)
T KOG0345|consen 148 REAEKLSFRSLEILVLDEADRLLDM--GFEASVNTI----LSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEK 221 (567)
T ss_pred chhhhccccccceEEecchHhHhcc--cHHHHHHHH----HHhcccccccccccchhhHHHHHHHHhhccCceeeeeccc
Confidence 53322 1558999999999999999 788888777 4444555678899999999988866666766654433322
Q ss_pred c---cCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhh--CCCcEEEecCCCCHHH
Q 036378 386 Q---LRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCD--NSISVKSYHSGIPAKD 460 (815)
Q Consensus 386 ~---~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~--~g~~v~~~h~~~~~~~ 460 (815)
. .+..+......+.... ....+..++......+++||+.|...++..+..|.. .+..+..+||.|.+..
T Consensus 222 ~~~~tPS~L~~~Y~v~~a~e------K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~ 295 (567)
T KOG0345|consen 222 SKSATPSSLALEYLVCEADE------KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKA 295 (567)
T ss_pred ccccCchhhcceeeEecHHH------HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchh
Confidence 2 2222333322222222 233344555556678999999999999999988876 4678999999999999
Q ss_pred HHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHH
Q 036378 461 RSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLR 535 (815)
Q Consensus 461 R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~ 535 (815)
|..+++.|.+....||+|||+++||||+|+|++||+||+|.+...|+||+||+||.|+.|.+++|+.+.+.....
T Consensus 296 R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 296 RAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred HHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 999999999988999999999999999999999999999999999999999999999999999999987655444
No 30
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-48 Score=411.60 Aligned_cols=356 Identities=18% Similarity=0.220 Sum_probs=277.4
Q ss_pred cccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc--
Q 036378 163 YRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-- 240 (815)
Q Consensus 163 ~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-- 240 (815)
....|..+++++.++..|.+. +++..||.+|+++||.+++|+|++|.++||||||++|++|++..
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~-------------m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq 200 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTK-------------MKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQ 200 (708)
T ss_pred ccccchhcCCCHHHHHHHHHH-------------hccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHH
Confidence 346789999999999999886 89999999999999999999999999999999999999999853
Q ss_pred ----------CCcEEEEcccHHHHHHHHHhcCCCceee-ee--ccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhh
Q 036378 241 ----------PGLTLVVCPLVALMIDQLRHLPPVIHGG-FL--SSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307 (815)
Q Consensus 241 ----------~~~~lVl~P~~~L~~q~~~~l~~~~~~~-~i--~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~ 307 (815)
|..+|||+|||||+.|.++.+.+.++.. +| ...++++.....-.+++.| ++|||+||+||++++..
T Consensus 201 ~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG-iNILIgTPGRLvDHLkn 279 (708)
T KOG0348|consen 201 AMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG-INILIGTPGRLVDHLKN 279 (708)
T ss_pred hcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC-ceEEEcCchHHHHHHhc
Confidence 6789999999999999999998854421 11 2223444444445567777 99999999999998877
Q ss_pred hhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHH---H------hcccceeEeeecccChhHHHHHHHHhcCCc
Q 036378 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR---A------RLNVECILAMTATATTTTLRDVMSALEIPL 378 (815)
Q Consensus 308 ~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~---~------~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~ 378 (815)
.....+.++++||+||||++++. +|..++..|+..+-. . .++..|-+++|||++..|.+...-.|..+
T Consensus 280 T~~i~~s~LRwlVlDEaDrlleL--Gfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDp- 356 (708)
T KOG0348|consen 280 TKSIKFSRLRWLVLDEADRLLEL--GFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDP- 356 (708)
T ss_pred cchheeeeeeEEEecchhHHHhc--cchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCc-
Confidence 66555889999999999999999 788888888665411 1 11235789999999988765443333322
Q ss_pred cceeec----------------------------cccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEec
Q 036378 379 SNLIQK----------------------------AQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430 (815)
Q Consensus 379 ~~~~~~----------------------------~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~ 430 (815)
..+.. ...+.++...+..+..+.. ...+...+...++.....+++||+.
T Consensus 357 -v~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLR--LV~Laa~L~~~~k~~~~qk~iVF~S 433 (708)
T KOG0348|consen 357 -VYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLR--LVALAALLLNKVKFEEKQKMIVFFS 433 (708)
T ss_pred -eeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchh--HHHHHHHHHHHhhhhhhceeEEEEe
Confidence 22210 0111222222222222221 1222233344455556678999999
Q ss_pred chHHHHHHHHHHhhC----------------------CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccccccccc
Q 036378 431 KHFETDLISRYLCDN----------------------SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK 488 (815)
Q Consensus 431 s~~~~e~l~~~L~~~----------------------g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~ 488 (815)
+.+.++.-+..|... +.++..+||+|.+++|..+++.|...+-.||+|||+++||+|+
T Consensus 434 ~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDl 513 (708)
T KOG0348|consen 434 CSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDL 513 (708)
T ss_pred chhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCC
Confidence 999999888887641 4578899999999999999999999999999999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 489 RDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 489 p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
|+|++||.||.|.+.++|+||+||+.|.|..|.+++|+.+.+...++.+.
T Consensus 514 P~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~ 563 (708)
T KOG0348|consen 514 PHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLK 563 (708)
T ss_pred CCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888766554
No 31
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-48 Score=393.99 Aligned_cols=343 Identities=20% Similarity=0.233 Sum_probs=268.3
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
..|+++|+.+++.+.+.. +|...|||+|..+||.||.|+|+|.+|.||||||.+|.+|++.+
T Consensus 7 ~~F~~LGl~~Wlve~l~~--------------l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed 72 (442)
T KOG0340|consen 7 KPFSILGLSPWLVEQLKA--------------LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED 72 (442)
T ss_pred CchhhcCccHHHHHHHHH--------------hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC
Confidence 478999999999999999 89999999999999999999999999999999999999999976
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhh---hh
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS---IF 310 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~---~~ 310 (815)
+-.++|++||++|+.|..+.|... ++...+.+++..-... .....++++||+||||+..++..+ ..
T Consensus 73 P~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa----~~L~~rPHvVvatPGRlad~l~sn~~~~~ 148 (442)
T KOG0340|consen 73 PYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQA----AILSDRPHVVVATPGRLADHLSSNLGVCS 148 (442)
T ss_pred CCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhh----hhcccCCCeEecCccccccccccCCccch
Confidence 567999999999999999998762 4444554444322111 122346899999999999876655 22
Q ss_pred hhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccc----ee---e
Q 036378 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSN----LI---Q 383 (815)
Q Consensus 311 ~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~----~~---~ 383 (815)
..+.++.++|+||||++++- .|.... ..+....+..+|.++||||.+.... ..++.+... .+ .
T Consensus 149 ~~~~rlkflVlDEADrvL~~--~f~d~L----~~i~e~lP~~RQtLlfSATitd~i~----ql~~~~i~k~~a~~~e~~~ 218 (442)
T KOG0340|consen 149 WIFQRLKFLVLDEADRVLAG--CFPDIL----EGIEECLPKPRQTLLFSATITDTIK----QLFGCPITKSIAFELEVID 218 (442)
T ss_pred hhhhceeeEEecchhhhhcc--chhhHH----hhhhccCCCccceEEEEeehhhHHH----HhhcCCcccccceEEeccC
Confidence 33678999999999999864 454444 3345555566799999999987643 333333221 11 1
Q ss_pred ccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 036378 384 KAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSR 463 (815)
Q Consensus 384 ~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~ 463 (815)
.......+......+....+ ..|+-.+....+......+++|+++..+|+.|+..|+..++.+..+|+.|++.+|..
T Consensus 219 ~vstvetL~q~yI~~~~~vk---daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~ 295 (442)
T KOG0340|consen 219 GVSTVETLYQGYILVSIDVK---DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLA 295 (442)
T ss_pred CCCchhhhhhheeecchhhh---HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHH
Confidence 11122223333333322222 122221122222224678899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 464 IQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 464 i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
.+.+|+++.++||||||+++||+|+|.|..|||||+|.++.+|+||+||+.|+|+.|.++.|+++.|...+..+.
T Consensus 296 aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE 370 (442)
T KOG0340|consen 296 ALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIE 370 (442)
T ss_pred HHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887664
No 32
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-49 Score=422.43 Aligned_cols=355 Identities=20% Similarity=0.243 Sum_probs=284.2
Q ss_pred CcccccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH
Q 036378 160 KLSYRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 160 ~~~~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~ 239 (815)
..+...+|.+..+.+.+...+.. .||..|+|+|+.+|+.+..|+|.+++|+||||||.+|++|++.
T Consensus 69 ~p~~i~~f~~~~l~~~l~~ni~~--------------~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~ 134 (482)
T KOG0335|consen 69 VPPHIPTFDEAILGEALAGNIKR--------------SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIIS 134 (482)
T ss_pred cCCCcccccccchhHHHhhcccc--------------ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHH
Confidence 33444577766777777777776 6999999999999999999999999999999999999999984
Q ss_pred c----------------CCcEEEEcccHHHHHHHHHhcCCCceeeeec--cCCChHHHHHHHHHHhcCCceEEEeChhhh
Q 036378 240 L----------------PGLTLVVCPLVALMIDQLRHLPPVIHGGFLS--SSQRPEEVAETIRLIQVGAIKVLFVSPERF 301 (815)
Q Consensus 240 ~----------------~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L 301 (815)
. .+.+||++||++|+.|.+++..++.-...+. ..........+...+..| |+|+|+||++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~g-cdIlvaTpGrL 213 (482)
T KOG0335|consen 135 YLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRG-CDILVATPGRL 213 (482)
T ss_pred HHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccC-ccEEEecCchh
Confidence 3 2689999999999999999999853322222 222334445556666666 99999999999
Q ss_pred hchhhhhhhhhcCcccEEEEeccccccc-cccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCc--
Q 036378 302 LNADFLSIFTATSLISLVVVDEAHCVSE-WSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPL-- 378 (815)
Q Consensus 302 ~~~~~~~~~~~~~~i~~lViDEaH~i~~-~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~-- 378 (815)
.+......+. +.+++++|+||||+|++ + +|-|.+..|+...-.......|.++||||.+......+..++....
T Consensus 214 ~d~~e~g~i~-l~~~k~~vLDEADrMlD~m--gF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~ 290 (482)
T KOG0335|consen 214 KDLIERGKIS-LDNCKFLVLDEADRMLDEM--GFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIF 290 (482)
T ss_pred hhhhhcceee-hhhCcEEEecchHHhhhhc--cccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceE
Confidence 9998888877 88999999999999998 7 8999999995443222335679999999999988775555543221
Q ss_pred cceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhcc----c-----cceEEEecchHHHHHHHHHHhhCCCcE
Q 036378 379 SNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSK----H-----YYILQISGKHFETDLISRYLCDNSISV 449 (815)
Q Consensus 379 ~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~----~-----~~~ivf~~s~~~~e~l~~~L~~~g~~v 449 (815)
..+.+......|+...+..+.+..+. ..+..++.... . ..+++||.+++.+..|+.+|...++++
T Consensus 291 laV~rvg~~~~ni~q~i~~V~~~~kr------~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~ 364 (482)
T KOG0335|consen 291 LAVGRVGSTSENITQKILFVNEMEKR------SKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPA 364 (482)
T ss_pred EEEeeeccccccceeEeeeecchhhH------HHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCc
Confidence 12223445567777776666544432 12222222111 2 378999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 450 KSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 450 ~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
..+||+.++.+|.+.++.|++|++.|||||++++||||+|+|++||+||+|.+..+|+||+||+||+|+.|.++.|++..
T Consensus 365 ~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~ 444 (482)
T KOG0335|consen 365 KSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEK 444 (482)
T ss_pred eeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cHHHHHHhh
Q 036378 530 TYFRLRSLM 538 (815)
Q Consensus 530 d~~~l~~~~ 538 (815)
+....+.+.
T Consensus 445 ~~~i~~~L~ 453 (482)
T KOG0335|consen 445 NQNIAKALV 453 (482)
T ss_pred cchhHHHHH
Confidence 665555443
No 33
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.7e-48 Score=398.78 Aligned_cols=340 Identities=21% Similarity=0.289 Sum_probs=271.9
Q ss_pred CCcccccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH
Q 036378 159 GKLSYRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 159 ~~~~~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l 238 (815)
...|...+|.+..++..+++.|.. -|+..|||+|.+.+|.+++|+|.+.++-||||||++|.+|++
T Consensus 164 ~ipPPIksF~eMKFP~~~L~~lk~--------------KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~i 229 (610)
T KOG0341|consen 164 DIPPPIKSFKEMKFPKPLLRGLKK--------------KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVI 229 (610)
T ss_pred CCCCchhhhhhccCCHHHHHHHHh--------------cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHH
Confidence 345566788888888888888888 499999999999999999999999999999999999999987
Q ss_pred Hc--------------CCcEEEEcccHHHHHHHHHhcCCCce--------eeeeccCCChHHHHHHHHHHhcCCceEEEe
Q 036378 239 IL--------------PGLTLVVCPLVALMIDQLRHLPPVIH--------GGFLSSSQRPEEVAETIRLIQVGAIKVLFV 296 (815)
Q Consensus 239 ~~--------------~~~~lVl~P~~~L~~q~~~~l~~~~~--------~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~ 296 (815)
+. ++..|||||+|+|+.|.++.+..++. ...-...+++-...++++.++.| ++|+|+
T Consensus 230 mf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~G-vHivVA 308 (610)
T KOG0341|consen 230 MFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRG-VHIVVA 308 (610)
T ss_pred HHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcC-eeEEEc
Confidence 43 67899999999999998887765321 11111123344566677788888 999999
Q ss_pred ChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcC
Q 036378 297 SPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEI 376 (815)
Q Consensus 297 TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~ 376 (815)
||+||.+.+....+. +.-++++++||||+|.++ +|..++..++.. ....+|.++||||++..........|-.
T Consensus 309 TPGRL~DmL~KK~~s-Ld~CRyL~lDEADRmiDm--GFEddir~iF~~----FK~QRQTLLFSATMP~KIQ~FAkSALVK 381 (610)
T KOG0341|consen 309 TPGRLMDMLAKKIMS-LDACRYLTLDEADRMIDM--GFEDDIRTIFSF----FKGQRQTLLFSATMPKKIQNFAKSALVK 381 (610)
T ss_pred CcchHHHHHHHhhcc-HHHHHHhhhhhHHHHhhc--cchhhHHHHHHH----HhhhhheeeeeccccHHHHHHHHhhccc
Confidence 999999988777776 778999999999999999 899888887443 3345689999999999887766665544
Q ss_pred Cccceee-ccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhc--cccceEEEecchHHHHHHHHHHhhCCCcEEEec
Q 036378 377 PLSNLIQ-KAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS--KHYYILQISGKHFETDLISRYLCDNSISVKSYH 453 (815)
Q Consensus 377 ~~~~~~~-~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h 453 (815)
|....+. .....-++...+..... -.++..+++-+ ...++++||..+..++.+.++|--.|..++.+|
T Consensus 382 PvtvNVGRAGAAsldViQevEyVkq---------EaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIH 452 (610)
T KOG0341|consen 382 PVTVNVGRAGAASLDVIQEVEYVKQ---------EAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIH 452 (610)
T ss_pred ceEEecccccccchhHHHHHHHHHh---------hhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEee
Confidence 4332221 11111111111100000 01223444333 457899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 454 SGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 454 ~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
||-++++|...++.|+.|+-+|||||++++.|+|+|++.+|||||||..+++|+||+||+||.|+.|.+..|+++.
T Consensus 453 GGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 453 GGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred cCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.5e-45 Score=434.61 Aligned_cols=339 Identities=19% Similarity=0.235 Sum_probs=249.9
Q ss_pred cccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----CCcEE
Q 036378 171 ELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-----PGLTL 245 (815)
Q Consensus 171 ~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-----~~~~l 245 (815)
.+++++.+.+.+ .||..|+++|.+||+.+++|+|+++.+|||||||+||++|++.. +.++|
T Consensus 20 ~l~~~l~~~L~~--------------~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL 85 (742)
T TIGR03817 20 WAHPDVVAALEA--------------AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATAL 85 (742)
T ss_pred cCCHHHHHHHHH--------------cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEE
Confidence 467888888888 79999999999999999999999999999999999999999853 46899
Q ss_pred EEcccHHHHHHHHHhcCCC----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhh---hhhhcCcccE
Q 036378 246 VVCPLVALMIDQLRHLPPV----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS---IFTATSLISL 318 (815)
Q Consensus 246 Vl~P~~~L~~q~~~~l~~~----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~---~~~~~~~i~~ 318 (815)
||+||+||+.|+...+.++ +....+.+.....+. ..+.. +++|+|+||++|....... ....+.++++
T Consensus 86 ~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r----~~i~~-~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~ 160 (742)
T TIGR03817 86 YLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEER----RWARE-HARYVLTNPDMLHRGILPSHARWARFLRRLRY 160 (742)
T ss_pred EEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHH----HHHhc-CCCEEEEChHHHHHhhccchhHHHHHHhcCCE
Confidence 9999999999999998874 333344444443322 23333 4899999999986432211 1122678999
Q ss_pred EEEeccccccccccCchHHHHHHHHHHHH---HhcccceeEeeecccChhHHHHHHHHhcCCccceeecccc-CCCeeEE
Q 036378 319 VVVDEAHCVSEWSHNFRPSYMRLRASLLR---ARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQL-RDNLQLS 394 (815)
Q Consensus 319 lViDEaH~i~~~g~~fr~~~~~i~~~~~~---~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~l~~~ 394 (815)
|||||||++.+ .|...+..++..+.+ .....+|++++|||.+.... .+...++.+. .++..... .....+.
T Consensus 161 vViDEah~~~g---~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~-~~i~~~~~~~~~~~~~ 235 (742)
T TIGR03817 161 VVIDECHSYRG---VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPV-VAVTEDGSPRGARTVA 235 (742)
T ss_pred EEEeChhhccC---ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCe-EEECCCCCCcCceEEE
Confidence 99999999864 366555555444332 23345799999999988743 3444444442 22322211 1222222
Q ss_pred EEecCC-----c-----cchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhC--------CCcEEEecCCC
Q 036378 395 VSLSGN-----N-----RQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDN--------SISVKSYHSGI 456 (815)
Q Consensus 395 v~~~~~-----~-----~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~--------g~~v~~~h~~~ 456 (815)
+..... . ...........+..+.. .+.+++|||+|++.++.++..|++. +..+..|||+|
T Consensus 236 ~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~ 313 (742)
T TIGR03817 236 LWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGY 313 (742)
T ss_pred EecCCccccccccccccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCC
Confidence 211110 0 00001112223333333 3578999999999999999998763 67889999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEecc--ccHHHH
Q 036378 457 PAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD--ITYFRL 534 (815)
Q Consensus 457 ~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~--~d~~~l 534 (815)
++++|.+++++|++|++++||||+++++|||+++|++||||++|.+.++|+||+|||||.|+.|.++++... .|...+
T Consensus 314 ~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 314 LPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLV 393 (742)
T ss_pred CHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863 454444
Q ss_pred H
Q 036378 535 R 535 (815)
Q Consensus 535 ~ 535 (815)
+
T Consensus 394 ~ 394 (742)
T TIGR03817 394 H 394 (742)
T ss_pred h
Confidence 4
No 35
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-46 Score=392.29 Aligned_cols=348 Identities=16% Similarity=0.200 Sum_probs=292.9
Q ss_pred cccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc--
Q 036378 163 YRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-- 240 (815)
Q Consensus 163 ~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-- 240 (815)
...+|+++++...++.++.. --|.+|+|+|.+++|..+.|+|++.+|-||||||.+|+.|++.+
T Consensus 221 pvtsfeh~gfDkqLm~airk--------------~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~him 286 (731)
T KOG0339|consen 221 PVTSFEHFGFDKQLMTAIRK--------------SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIM 286 (731)
T ss_pred CcchhhhcCchHHHHHHHhh--------------hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhc
Confidence 34788999999999999998 58999999999999999999999999999999999999999854
Q ss_pred ---------CCcEEEEcccHHHHHHHHHhcCCCceeeeec--cCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhh
Q 036378 241 ---------PGLTLVVCPLVALMIDQLRHLPPVIHGGFLS--SSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309 (815)
Q Consensus 241 ---------~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~ 309 (815)
++..||++||++|+.|++.+.+++.++..++ +...+....++...++.| +.|||+||+||.+......
T Consensus 287 dq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g-~EivVaTPgRlid~VkmKa 365 (731)
T KOG0339|consen 287 DQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEG-AEIVVATPGRLIDMVKMKA 365 (731)
T ss_pred chhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcC-CeEEEechHHHHHHHHhhc
Confidence 6789999999999999999998865443332 223344455666777766 9999999999999988887
Q ss_pred hhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeec-cccC
Q 036378 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQK-AQLR 388 (815)
Q Consensus 310 ~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~ 388 (815)
.. +.++++||||||++|.++ +|.+....| .....+..|.|+||||....+...+...|..+...+... ....
T Consensus 366 tn-~~rvS~LV~DEadrmfdm--Gfe~qVrSI----~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean 438 (731)
T KOG0339|consen 366 TN-LSRVSYLVLDEADRMFDM--GFEPQVRSI----KQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEAN 438 (731)
T ss_pred cc-ceeeeEEEEechhhhhcc--ccHHHHHHH----HhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccc
Confidence 77 889999999999999998 788888777 345568889999999999999988888887775544321 2223
Q ss_pred CCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHH
Q 036378 389 DNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELF 468 (815)
Q Consensus 389 ~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F 468 (815)
..+...|..+....+. .. ..+..|......+.+++|+..+..+++++..|+-.|+.+..+||+|++.+|.+++..|
T Consensus 439 ~dITQ~V~V~~s~~~K-l~---wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~f 514 (731)
T KOG0339|consen 439 EDITQTVSVCPSEEKK-LN---WLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKF 514 (731)
T ss_pred cchhheeeeccCcHHH-HH---HHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHH
Confidence 4455555555444331 11 1223556666778999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHH
Q 036378 469 CSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536 (815)
Q Consensus 469 ~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~ 536 (815)
+.+...|||||+++++|+|+++++.||+||+-.+++.|.||+||+||.|..|.+|.|+++.|....-.
T Consensus 515 Kkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~ 582 (731)
T KOG0339|consen 515 KKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGH 582 (731)
T ss_pred hhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999998764433
No 36
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-46 Score=396.64 Aligned_cols=354 Identities=20% Similarity=0.194 Sum_probs=267.8
Q ss_pred cccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCChhHHHHHHHHHHHc-
Q 036378 163 YRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDK-KSTMLVLPTGAGKSLCYQIPAMIL- 240 (815)
Q Consensus 163 ~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g-~d~li~apTGsGKTl~~~lp~l~~- 240 (815)
....|.+|.++.+++++|.+ +||..|||+|...||++..| .|+|..|.|||||||+|-+|++..
T Consensus 179 DvsAW~~l~lp~~iL~aL~~--------------~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l 244 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSN--------------LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERL 244 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHh--------------cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhh
Confidence 44678889999999999999 89999999999999999999 599999999999999999999862
Q ss_pred ----------------C--CcEEEEcccHHHHHHHHHhcCC-----CceeeeeccCCChHHHHHHHHHHhcCCceEEEeC
Q 036378 241 ----------------P--GLTLVVCPLVALMIDQLRHLPP-----VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVS 297 (815)
Q Consensus 241 ----------------~--~~~lVl~P~~~L~~q~~~~l~~-----~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~T 297 (815)
. ..+||++|||+|+.|+.+++.. .+....+.+++........+.. .++|||+|
T Consensus 245 ~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVAT 320 (731)
T KOG0347|consen 245 LESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVAT 320 (731)
T ss_pred hhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEec
Confidence 2 3499999999999999999876 4556667777665554444332 68999999
Q ss_pred hhhhhchhhhhh--hhhcCcccEEEEeccccccccccCchHHHHHHHHHHH-HHhcccceeEeeecccChhHHHHHHHHh
Q 036378 298 PERFLNADFLSI--FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLL-RARLNVECILAMTATATTTTLRDVMSAL 374 (815)
Q Consensus 298 Pe~L~~~~~~~~--~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~-~~~~~~~~vl~lSAT~~~~~~~~i~~~l 374 (815)
|+||+..+.... +..+..++++||||||+|.+-|| | ..+..++..+. .......|.+.+|||.+......+....
T Consensus 321 PGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekgh-F-~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~ 398 (731)
T KOG0347|consen 321 PGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH-F-EELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSR 398 (731)
T ss_pred chHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhcc-H-HHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhh
Confidence 999998665443 34478999999999999999876 3 34444434333 2233456999999999864433222211
Q ss_pred cCCc---------cceeeccccC-CCeeEEEEecCCccchhhhhhHHH---------HHHHHhhc--cccceEEEecchH
Q 036378 375 EIPL---------SNLIQKAQLR-DNLQLSVSLSGNNRQNERSAYVDE---------VFSFHRSS--KHYYILQISGKHF 433 (815)
Q Consensus 375 ~~~~---------~~~~~~~~~~-~~l~~~v~~~~~~~~~~~~~~~~~---------l~~l~~~~--~~~~~ivf~~s~~ 433 (815)
.... ...+....++ .+..+.. ... ........+. -..+.-.+ -.++++||||+..
T Consensus 399 k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~--t~q--~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId 474 (731)
T KOG0347|consen 399 KKKDKEDELNAKIQHLMKKIGFRGKPKIIDL--TPQ--SATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSID 474 (731)
T ss_pred hccchhhhhhHHHHHHHHHhCccCCCeeEec--Ccc--hhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHH
Confidence 1100 0011111111 1111110 000 0000000000 00111111 2467899999999
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHccc
Q 036378 434 ETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRA 513 (815)
Q Consensus 434 ~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRa 513 (815)
.+..|+-+|...++....+|+.|.+++|.+.+++|.+....||||||+++||+|||+|.|||||.+|.+.+.|+||.||+
T Consensus 475 ~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRT 554 (731)
T KOG0347|consen 475 CVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRT 554 (731)
T ss_pred HHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeccccHHHHHHhhhc
Q 036378 514 GRDGRLSYCHLFLDDITYFRLRSLMYS 540 (815)
Q Consensus 514 GR~g~~g~~i~l~~~~d~~~l~~~~~~ 540 (815)
+|++..|..++|+.+.++..++++.+.
T Consensus 555 ARA~~~Gvsvml~~P~e~~~~~KL~kt 581 (731)
T KOG0347|consen 555 ARANSEGVSVMLCGPQEVGPLKKLCKT 581 (731)
T ss_pred ccccCCCeEEEEeChHHhHHHHHHHHH
Confidence 999999999999999999888887643
No 37
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-45 Score=384.51 Aligned_cols=338 Identities=19% Similarity=0.247 Sum_probs=277.5
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|+++++.+.+++++.+ .||..||-+|+.|||.+++|+|+++.|.||||||++|++|++..
T Consensus 19 ktFe~~gLD~RllkAi~~--------------lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~ 84 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITK--------------LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAE 84 (569)
T ss_pred ccHHHhCCCHHHHHHHHH--------------hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHh
Confidence 589999999999999999 79999999999999999999999999999999999999999853
Q ss_pred --------CCcEEEEcccHHHHHHHHHhcCCC-------ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchh
Q 036378 241 --------PGLTLVVCPLVALMIDQLRHLPPV-------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305 (815)
Q Consensus 241 --------~~~~lVl~P~~~L~~q~~~~l~~~-------~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~ 305 (815)
+..++|++||++|++|.+..+.+. ++...+.+.++..... .+..+.++|||+||++++.+.
T Consensus 85 k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~pdIvV~TP~~ll~~~ 160 (569)
T KOG0346|consen 85 KKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDLPDIVVATPAKLLRHL 160 (569)
T ss_pred hhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccCCCeEEeChHHHHHHH
Confidence 567999999999999999988763 3445555555554433 344567999999999999987
Q ss_pred hhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeecc
Q 036378 306 FLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA 385 (815)
Q Consensus 306 ~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~ 385 (815)
....+..+..+.++|+||||.++.+ +|..++..+ ....++..|.++||||.+.++...-.-.+..|....+..+
T Consensus 161 ~~~~~~~~~~l~~LVvDEADLllsf--GYeedlk~l----~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~ 234 (569)
T KOG0346|consen 161 AAGVLEYLDSLSFLVVDEADLLLSF--GYEEDLKKL----RSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEG 234 (569)
T ss_pred hhccchhhhheeeEEechhhhhhhc--ccHHHHHHH----HHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccc
Confidence 7776555778999999999999977 677777666 4455666799999999998887654455566555444444
Q ss_pred ccC--CCeeEEEEecCCccchhhhhhHHHHHHHHh-hccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 036378 386 QLR--DNLQLSVSLSGNNRQNERSAYVDEVFSFHR-SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS 462 (815)
Q Consensus 386 ~~~--~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~ 462 (815)
... .++......+.+..+.. .+..+++ .+-.++.++|+|+...|-.|--+|...|++..+++|.|+...|-
T Consensus 235 el~~~dqL~Qy~v~cse~DKfl------llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~ 308 (569)
T KOG0346|consen 235 ELPNPDQLTQYQVKCSEEDKFL------LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRC 308 (569)
T ss_pred cCCCcccceEEEEEeccchhHH------HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchh
Confidence 444 55555555555433321 1112211 22357899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEcc-----------------------------------ccccccccCCccEEEEeCCCCCHHHHH
Q 036378 463 RIQELFCSNKIRVVVATV-----------------------------------AFGMGLDKRDVGAVIHYSLPESLEEYV 507 (815)
Q Consensus 463 ~i~~~F~~g~~~VLVaT~-----------------------------------~~~~GID~p~v~~VI~~d~P~s~~~y~ 507 (815)
.|+++|..|-.+|||||| -.+||||+.+|..|||||+|.+...|+
T Consensus 309 Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYI 388 (569)
T KOG0346|consen 309 HIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYI 388 (569)
T ss_pred hHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHH
Confidence 999999999999999998 134999999999999999999999999
Q ss_pred HHHcccCCCCCCceEEEEeccccHH
Q 036378 508 QEIGRAGRDGRLSYCHLFLDDITYF 532 (815)
Q Consensus 508 Qr~GRaGR~g~~g~~i~l~~~~d~~ 532 (815)
||+||++|++++|.++.|+.+.+..
T Consensus 389 HRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 389 HRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred HhccccccCCCCCceEEEecchHHh
Confidence 9999999999999999999988765
No 38
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-43 Score=363.48 Aligned_cols=337 Identities=17% Similarity=0.231 Sum_probs=274.4
Q ss_pred cccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHc--CCCEEEEcCCChhHHHHHHHHHHHc
Q 036378 163 YRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLD--KKSTMLVLPTGAGKSLCYQIPAMIL 240 (815)
Q Consensus 163 ~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~--g~d~li~apTGsGKTl~~~lp~l~~ 240 (815)
...+|++|+|.|++++.+.. ++|..|+.+|+.|+|.++. .++.|+++..|+|||.||.+.+|.+
T Consensus 88 S~ksFeeL~LkPellkgly~--------------M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsr 153 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYA--------------MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSR 153 (477)
T ss_pred ccccHHhhCCCHHHHhHHHH--------------hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHh
Confidence 45899999999999999999 8999999999999999997 4699999999999999999999965
Q ss_pred ------CCcEEEEcccHHHHHHHHHhcCCCceeeee--ccCCChHHHHHHHHHHhcC---CceEEEeChhhhhchhhh-h
Q 036378 241 ------PGLTLVVCPLVALMIDQLRHLPPVIHGGFL--SSSQRPEEVAETIRLIQVG---AIKVLFVSPERFLNADFL-S 308 (815)
Q Consensus 241 ------~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~l~~g---~~~Ili~TPe~L~~~~~~-~ 308 (815)
.+++++|+|+++|+.|..+.+.+..+...+ ....... +...| ..+|+|+||+.+.+.... .
T Consensus 154 vd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~s-------k~~rG~~i~eqIviGTPGtv~Dlm~klk 226 (477)
T KOG0332|consen 154 VDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGS-------KAKRGNKLTEQIVIGTPGTVLDLMLKLK 226 (477)
T ss_pred cCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCc-------ccccCCcchhheeeCCCccHHHHHHHHH
Confidence 678999999999999988888763221111 1111111 11111 257999999999997766 4
Q ss_pred hhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccC
Q 036378 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLR 388 (815)
Q Consensus 309 ~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~ 388 (815)
.+. +..+..+|+||||.|.+ ..+|...-..| .+..+...|++++|||....+...+.+.+..+....++.....
T Consensus 227 ~id-~~kikvfVlDEAD~Mi~-tqG~~D~S~rI----~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~ 300 (477)
T KOG0332|consen 227 CID-LEKIKVFVLDEADVMID-TQGFQDQSIRI----MRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELA 300 (477)
T ss_pred hhC-hhhceEEEecchhhhhh-cccccccchhh----hhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcc
Confidence 444 78899999999999985 34666655555 4455568899999999999999988888887777666554332
Q ss_pred -CCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHH
Q 036378 389 -DNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467 (815)
Q Consensus 389 -~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~ 467 (815)
.++......+.... .+.+.+..+...+.-+..+|||.|++.+.+|+..|...|..|..+||+|...+|..++++
T Consensus 301 L~~IkQlyv~C~~~~-----~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~ 375 (477)
T KOG0332|consen 301 LDNIKQLYVLCACRD-----DKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDR 375 (477)
T ss_pred ccchhhheeeccchh-----hHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHH
Confidence 33333222232222 234555567777788899999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEEccccccccccCCccEEEEeCCCC------CHHHHHHHHcccCCCCCCceEEEEeccccH
Q 036378 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPE------SLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531 (815)
Q Consensus 468 F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~------s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~ 531 (815)
|+.|+.+|||+|++++||||++.|.+|||||+|- +.+.|+||+||+||.|+.|.++.|++..+.
T Consensus 376 Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 376 FREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDS 445 (477)
T ss_pred HhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCc
Confidence 9999999999999999999999999999999996 899999999999999999999999987653
No 39
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-42 Score=398.90 Aligned_cols=352 Identities=19% Similarity=0.284 Sum_probs=288.0
Q ss_pred cccccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc
Q 036378 161 LSYRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL 240 (815)
Q Consensus 161 ~~~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~ 240 (815)
.....+|.+-++...++..++. +||..+||+|.+|||+|+.|+|+|.+|.||||||++|++|++.+
T Consensus 361 pkpv~sW~q~gl~~~il~tlkk--------------l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirh 426 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKK--------------LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRH 426 (997)
T ss_pred CcccchHhhCCchHHHHHHHHH--------------hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhh
Confidence 3345678888888888888866 89999999999999999999999999999999999999999854
Q ss_pred -----------CCcEEEEcccHHHHHHHHHhcCCCcee--eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhh
Q 036378 241 -----------PGLTLVVCPLVALMIDQLRHLPPVIHG--GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307 (815)
Q Consensus 241 -----------~~~~lVl~P~~~L~~q~~~~l~~~~~~--~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~ 307 (815)
++.+||++||++|+.|+.+.+.++.+. ..+....+...+..++..+++| +.|+||||++..+.+..
T Consensus 427 i~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~ 505 (997)
T KOG0334|consen 427 IKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCA 505 (997)
T ss_pred hhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhh
Confidence 789999999999999999999885432 3333445556777888899999 99999999999987766
Q ss_pred hhhh--hcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceee-c
Q 036378 308 SIFT--ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQ-K 384 (815)
Q Consensus 308 ~~~~--~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~-~ 384 (815)
+... .+.++.++|+||||+|.++ +|.|....| +....+..|++++|||.+..+.......+..|...++. .
T Consensus 506 n~grvtnlrR~t~lv~deaDrmfdm--gfePq~~~I----i~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~ 579 (997)
T KOG0334|consen 506 NSGRVTNLRRVTYLVLDEADRMFDM--GFEPQITRI----LQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGR 579 (997)
T ss_pred cCCccccccccceeeechhhhhhee--ccCcccchH----HhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccc
Confidence 5444 3556669999999999988 888988776 44457788999999999999777666777755553332 2
Q ss_pred cccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 036378 385 AQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRI 464 (815)
Q Consensus 385 ~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i 464 (815)
+..-..+...+..+..... .+...+..+-......+++|||.++..|..+.+.|.+.|+.+..+||+.++.+|..+
T Consensus 580 svV~k~V~q~v~V~~~e~e----Kf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~st 655 (997)
T KOG0334|consen 580 SVVCKEVTQVVRVCAIENE----KFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSST 655 (997)
T ss_pred eeEeccceEEEEEecCchH----HHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhH
Confidence 2233555555555442222 112222222333457899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 465 ~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
+++|++|.+.+||||+++++|+|+.++.+|||||+|...++|+||+||+||.|+.|.|++|+.+++....-.+
T Consensus 656 i~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl 728 (997)
T KOG0334|consen 656 IEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDL 728 (997)
T ss_pred HHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999765544443
No 40
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-42 Score=357.26 Aligned_cols=345 Identities=18% Similarity=0.273 Sum_probs=281.9
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|++++|.+++++.+.. +||++|+.+|+.||..+..|.|+++.+++|+|||.+|.++++..
T Consensus 26 dsfddm~L~e~LLrgiy~--------------yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~ 91 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYA--------------YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS 91 (397)
T ss_pred hhhhhcCCCHHHHhHHHh--------------hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc
Confidence 489999999999999999 89999999999999999999999999999999999999999866
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCCceee--eeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcc
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPVIHGG--FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLI 316 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~~~~~--~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i 316 (815)
..++|+++|+++|+.|............ .++..............+....++|+++||+++.+.+....+. ...+
T Consensus 92 ~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~-~~~i 170 (397)
T KOG0327|consen 92 VKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLS-TDGI 170 (397)
T ss_pred hHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccccc-ccce
Confidence 5689999999999999997777633222 2222222222222233344445899999999999887666554 6689
Q ss_pred cEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccC-CCeeEEE
Q 036378 317 SLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLR-DNLQLSV 395 (815)
Q Consensus 317 ~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~v 395 (815)
.++|+||||.++.- +|+..+..+ ++..++..|++++|||.+.++..--.+++..+....+...... ..+....
T Consensus 171 KmfvlDEaDEmLs~--gfkdqI~~i----f~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~ 244 (397)
T KOG0327|consen 171 KMFVLDEADEMLSR--GFKDQIYDI----FQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFY 244 (397)
T ss_pred eEEeecchHhhhcc--chHHHHHHH----HHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeee
Confidence 99999999999854 899888777 5566777899999999999998877777776655544443322 1111111
Q ss_pred EecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceE
Q 036378 396 SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475 (815)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~V 475 (815)
....... ++..+..+.+ ...+.++|||+++.+..+...|...++.+.++||+|.+.+|..+++.|+.|..+|
T Consensus 245 i~v~k~~------k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrv 316 (397)
T KOG0327|consen 245 INVEKEE------KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRV 316 (397)
T ss_pred eeccccc------cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceE
Confidence 1111111 3444445555 6678899999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 476 LVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
||.|+.+++|||+.++..||+|++|...++|+||+||+||.|++|.++.++++.|...++.+.
T Consensus 317 lIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie 379 (397)
T KOG0327|consen 317 LITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIE 379 (397)
T ss_pred EeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999999998888764
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.4e-40 Score=395.20 Aligned_cols=332 Identities=20% Similarity=0.259 Sum_probs=247.6
Q ss_pred ccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCChhHHHHHHHHHHH---cC
Q 036378 166 TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKM-VLDKKSTMLVLPTGAGKSLCYQIPAMI---LP 241 (815)
Q Consensus 166 ~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~-il~g~d~li~apTGsGKTl~~~lp~l~---~~ 241 (815)
.|+++++++.+++.+.+ .||.+|+|+|.+|++. ++.|+|+++++|||||||++|.+|++. .+
T Consensus 2 ~~~~l~lp~~~~~~l~~--------------~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~ 67 (737)
T PRK02362 2 KIAELPLPEGVIEFYEA--------------EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG 67 (737)
T ss_pred ChhhcCCCHHHHHHHHh--------------CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC
Confidence 57788999999999988 6999999999999998 778999999999999999999999875 47
Q ss_pred CcEEEEcccHHHHHHHHHhcCCC----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCccc
Q 036378 242 GLTLVVCPLVALMIDQLRHLPPV----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLIS 317 (815)
Q Consensus 242 ~~~lVl~P~~~L~~q~~~~l~~~----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~ 317 (815)
+++|||+|+++|+.|+++.+.++ ++...+.+...... +. .+..+|+|+|||++.......... +.+++
T Consensus 68 ~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~-----~~--l~~~~IiV~Tpek~~~llr~~~~~-l~~v~ 139 (737)
T PRK02362 68 GKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRD-----EW--LGDNDIIVATSEKVDSLLRNGAPW-LDDIT 139 (737)
T ss_pred CcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCccc-----cc--cCCCCEEEECHHHHHHHHhcChhh-hhhcC
Confidence 89999999999999999998863 23333333322111 11 135799999999997765432222 66899
Q ss_pred EEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEe
Q 036378 318 LVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSL 397 (815)
Q Consensus 318 ~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~ 397 (815)
+|||||+|.+.+. ++.+.+..++.. ++...+..|+++||||++. ..++.+|++... +.....+..+...+..
T Consensus 140 lvViDE~H~l~d~--~rg~~le~il~r-l~~~~~~~qii~lSATl~n--~~~la~wl~~~~---~~~~~rpv~l~~~v~~ 211 (737)
T PRK02362 140 CVVVDEVHLIDSA--NRGPTLEVTLAK-LRRLNPDLQVVALSATIGN--ADELADWLDAEL---VDSEWRPIDLREGVFY 211 (737)
T ss_pred EEEEECccccCCC--cchHHHHHHHHH-HHhcCCCCcEEEEcccCCC--HHHHHHHhCCCc---ccCCCCCCCCeeeEec
Confidence 9999999999864 556666666444 4444567899999999875 356778886432 1111111111111110
Q ss_pred c-----CCccc-h---hhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCC----------------------
Q 036378 398 S-----GNNRQ-N---ERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNS---------------------- 446 (815)
Q Consensus 398 ~-----~~~~~-~---~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g---------------------- 446 (815)
. ..... . ........+.... ..+.+++|||++++.|+.++..|....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (737)
T PRK02362 212 GGAIHFDDSQREVEVPSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREV 289 (737)
T ss_pred CCeeccccccccCCCccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 0 00000 0 0011111122211 256799999999999999998886431
Q ss_pred --------------CcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE----eC-----CCCCH
Q 036378 447 --------------ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH----YS-----LPESL 503 (815)
Q Consensus 447 --------------~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~----~d-----~P~s~ 503 (815)
.++.++||||+..+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+.
T Consensus 290 ~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~ 369 (737)
T PRK02362 290 SDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPV 369 (737)
T ss_pred cCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCH
Confidence 36899999999999999999999999999999999999999999999997 76 68899
Q ss_pred HHHHHHHcccCCCCCC--ceEEEEeccc
Q 036378 504 EEYVQEIGRAGRDGRL--SYCHLFLDDI 529 (815)
Q Consensus 504 ~~y~Qr~GRaGR~g~~--g~~i~l~~~~ 529 (815)
.+|.||+|||||.|.. |.|+++....
T Consensus 370 ~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 370 LEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 9999999999999875 9999999765
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2e-40 Score=401.66 Aligned_cols=318 Identities=20% Similarity=0.243 Sum_probs=225.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc------------CCcEEEEcccHHHHHHHHHhcCC--
Q 036378 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL------------PGLTLVVCPLVALMIDQLRHLPP-- 263 (815)
Q Consensus 198 g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~------------~~~~lVl~P~~~L~~q~~~~l~~-- 263 (815)
+|..|+|+|++||+.+++|+|+++++|||||||++|++|++.. +..+|||+||++|+.|+++++..
T Consensus 29 ~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l 108 (876)
T PRK13767 29 KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPL 108 (876)
T ss_pred ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999998732 24699999999999999876542
Q ss_pred ---------------CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhh-hhcCcccEEEEeccccc
Q 036378 264 ---------------VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF-TATSLISLVVVDEAHCV 327 (815)
Q Consensus 264 ---------------~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~-~~~~~i~~lViDEaH~i 327 (815)
.+.....++.....+....+ ...++|+|+|||+|...+..... ..+.++++|||||+|.+
T Consensus 109 ~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l----~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l 184 (876)
T PRK13767 109 TEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML----KKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSL 184 (876)
T ss_pred HHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH----hCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhh
Confidence 12334444555444433322 23589999999999755433222 23678999999999999
Q ss_pred cccccCchHHHHH-HHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC------ccceeeccccCCCeeEEEEecC-
Q 036378 328 SEWSHNFRPSYMR-LRASLLRARLNVECILAMTATATTTTLRDVMSALEIP------LSNLIQKAQLRDNLQLSVSLSG- 399 (815)
Q Consensus 328 ~~~g~~fr~~~~~-i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~------~~~~~~~~~~~~~l~~~v~~~~- 399 (815)
.+. .|..+.. .+..+........|++++|||+.+. ..+..++... ....+..........+.+....
T Consensus 185 ~~~---~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~ 259 (876)
T PRK13767 185 AEN---KRGVHLSLSLERLEELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVD 259 (876)
T ss_pred ccC---ccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCc
Confidence 863 2333222 2233232223567899999998763 4456666432 1111211112222222222111
Q ss_pred C----ccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhC------CCcEEEecCCCCHHHHHHHHHHHh
Q 036378 400 N----NRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDN------SISVKSYHSGIPAKDRSRIQELFC 469 (815)
Q Consensus 400 ~----~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~------g~~v~~~h~~~~~~~R~~i~~~F~ 469 (815)
+ ............+..+. ..+.+++|||+|+..|+.++..|.+. +..+..+||+|+.++|..++++|+
T Consensus 260 ~l~~~~~~~~~~~l~~~L~~~i--~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk 337 (876)
T PRK13767 260 DLIHTPAEEISEALYETLHELI--KEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLK 337 (876)
T ss_pred cccccccchhHHHHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHH
Confidence 0 00111111222222222 23578999999999999999999873 468999999999999999999999
Q ss_pred cCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC-CCCceEEEEe
Q 036378 470 SNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD-GRLSYCHLFL 526 (815)
Q Consensus 470 ~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~-g~~g~~i~l~ 526 (815)
+|+++|||||+++++|||+|+|++||+++.|.++.+|+||+||+||. |..+.++++.
T Consensus 338 ~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 338 RGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred cCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999986 4444444444
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.8e-40 Score=397.42 Aligned_cols=314 Identities=16% Similarity=0.184 Sum_probs=244.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHHHHHHHH
Q 036378 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDK------KSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVALMIDQL 258 (815)
Q Consensus 188 ~l~~~l~~~~g~~~~~~~Q~~ai~~il~g------~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~L~~q~~ 258 (815)
.+.+.+...|+|. +||.|.+||+.++++ +|.|+++|||+|||++|++|++ ..+.+++|++||++|+.|++
T Consensus 439 ~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~ 517 (926)
T TIGR00580 439 EWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHF 517 (926)
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHH
Confidence 4445566668995 999999999999985 7999999999999999999876 34889999999999999999
Q ss_pred HhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccC
Q 036378 259 RHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHN 333 (815)
Q Consensus 259 ~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~ 333 (815)
+.+.+. ++...+++..+..+....++.+..|+++|||+||..+. ..+. +.++++|||||+|++. ..
T Consensus 518 ~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~-----~~v~-f~~L~llVIDEahrfg---v~ 588 (926)
T TIGR00580 518 ETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQ-----KDVK-FKDLGLLIIDEEQRFG---VK 588 (926)
T ss_pred HHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhh-----CCCC-cccCCEEEeecccccc---hh
Confidence 998863 34456667777778888888999999999999995432 1222 6789999999999853 22
Q ss_pred chHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeec-cccCCCeeEEEEecCCccchhhhhhHHH
Q 036378 334 FRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQK-AQLRDNLQLSVSLSGNNRQNERSAYVDE 412 (815)
Q Consensus 334 fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~v~~~~~~~~~~~~~~~~~ 412 (815)
.+ ..++......++++||||+.+++...... +.....++.. +..+.++...+..... . .....
T Consensus 589 ~~--------~~L~~~~~~~~vL~~SATpiprtl~~~l~--g~~d~s~I~~~p~~R~~V~t~v~~~~~--~----~i~~~ 652 (926)
T TIGR00580 589 QK--------EKLKELRTSVDVLTLSATPIPRTLHMSMS--GIRDLSIIATPPEDRLPVRTFVMEYDP--E----LVREA 652 (926)
T ss_pred HH--------HHHHhcCCCCCEEEEecCCCHHHHHHHHh--cCCCcEEEecCCCCccceEEEEEecCH--H----HHHHH
Confidence 22 22344456789999999999987754332 3323233322 2233444433332111 0 00111
Q ss_pred HHHHHhhccccceEEEecchHHHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCC
Q 036378 413 VFSFHRSSKHYYILQISGKHFETDLISRYLCDN--SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490 (815)
Q Consensus 413 l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~ 490 (815)
+ ......+.++++||++.+.++.+++.|++. ++.+..+||+|++++|.+++++|++|+++|||||+++++|||+|+
T Consensus 653 i--~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~ 730 (926)
T TIGR00580 653 I--RRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPN 730 (926)
T ss_pred H--HHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccccc
Confidence 1 122335678999999999999999999984 789999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 491 VGAVIHYSLPE-SLEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 491 v~~VI~~d~P~-s~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
+++||+++.|. ++.+|+||+||+||.|+.|+|++++.+.
T Consensus 731 v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 731 ANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999999976 7889999999999999999999999654
No 44
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=6e-42 Score=369.93 Aligned_cols=345 Identities=19% Similarity=0.213 Sum_probs=280.2
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
...|+++.+..+++..|+.+ ||..|+++|..|||+++.+.|+|+++..|+|||++|-+.++..
T Consensus 24 ~~~fe~l~l~r~vl~glrrn--------------~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~ 89 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRN--------------AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS 89 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhh--------------cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc
Confidence 35889999999999999984 9999999999999999999999999999999999998888743
Q ss_pred ---CCcEEEEcccHHHHHHHHHhcCCCc---eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcC
Q 036378 241 ---PGLTLVVCPLVALMIDQLRHLPPVI---HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS 314 (815)
Q Consensus 241 ---~~~~lVl~P~~~L~~q~~~~l~~~~---~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~ 314 (815)
..+.+||+|||+++.|+.+.+.+.. .+.......++........+++ +++|+||||+||..+.....+. +.
T Consensus 90 ~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk--~~rIvIGtPGRi~qL~el~~~n-~s 166 (980)
T KOG4284|consen 90 RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK--QTRIVIGTPGRIAQLVELGAMN-MS 166 (980)
T ss_pred ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh--hceEEecCchHHHHHHHhcCCC-cc
Confidence 5689999999999999998887632 2332233333333333333333 6899999999999998888887 88
Q ss_pred cccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccc--cCCCee
Q 036378 315 LISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQ--LRDNLQ 392 (815)
Q Consensus 315 ~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~ 392 (815)
.++++|+||||.+.+-+ .|+.++..| +...+..+|++++|||.+...-+.+.+++..+....+.... +-.--+
T Consensus 167 ~vrlfVLDEADkL~~t~-sfq~~In~i----i~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQ 241 (980)
T KOG4284|consen 167 HVRLFVLDEADKLMDTE-SFQDDINII----INSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQ 241 (980)
T ss_pred ceeEEEeccHHhhhchh-hHHHHHHHH----HHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhh
Confidence 99999999999998743 577777666 55667788999999999999888888888765433221111 111112
Q ss_pred EEEE-ecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC
Q 036378 393 LSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471 (815)
Q Consensus 393 ~~v~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g 471 (815)
|.+. ...+........++..|-.+...+.-.+.+|||+....|+-++.+|...|+.|.++.|.|.+.+|..+++.++.-
T Consensus 242 yv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f 321 (980)
T KOG4284|consen 242 YVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF 321 (980)
T ss_pred eeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc
Confidence 2222 222333333444556666777777888999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 472 ~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
.++|||+||..+||||-++|++|||.|.|.+-++|.||||||||.|..|.++.|+....
T Consensus 322 ~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 322 RVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred eEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 99999999999999999999999999999999999999999999999999999997653
No 45
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-42 Score=361.20 Aligned_cols=334 Identities=21% Similarity=0.273 Sum_probs=238.4
Q ss_pred cCCCCCCHHHHHHHHHHHc---------CCCEEEEcCCChhHHHHHHHHHHHc-------CCcEEEEcccHHHHHHHHHh
Q 036378 197 YGYDSFRDGQLEAIKMVLD---------KKSTMLVLPTGAGKSLCYQIPAMIL-------PGLTLVVCPLVALMIDQLRH 260 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~---------g~d~li~apTGsGKTl~~~lp~l~~-------~~~~lVl~P~~~L~~q~~~~ 260 (815)
++.....|+|..+++.++. ++|+.+.||||||||+||.+|+++. .-++|||+|+++|+.|+++.
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~ 234 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDT 234 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHH
Confidence 6899999999999999963 6899999999999999999999864 34799999999999999999
Q ss_pred cCCCceeee--eccCCChHHHHHHHHHHhcC----CceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCc
Q 036378 261 LPPVIHGGF--LSSSQRPEEVAETIRLIQVG----AIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNF 334 (815)
Q Consensus 261 l~~~~~~~~--i~~~~~~~~~~~~~~~l~~g----~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~f 334 (815)
|.++..+.. +.+.............+... .++|||+||+||.+++....-..+.+++++||||||+|++. .
T Consensus 235 f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q---s 311 (620)
T KOG0350|consen 235 FKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ---S 311 (620)
T ss_pred HHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH---H
Confidence 988543322 22222222233333333333 34999999999999876433333889999999999999862 1
Q ss_pred hHHHHHHHHHHHHH-------------------------------hcccceeEeeecccChhHHHHHHHHhcCCccceee
Q 036378 335 RPSYMRLRASLLRA-------------------------------RLNVECILAMTATATTTTLRDVMSALEIPLSNLIQ 383 (815)
Q Consensus 335 r~~~~~i~~~~~~~-------------------------------~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~ 383 (815)
..+|+..+...... ..+....+.+|||.+..-.....-.++.|....+.
T Consensus 312 fQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~ 391 (620)
T KOG0350|consen 312 FQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVS 391 (620)
T ss_pred HHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEee
Confidence 12222221111110 01112345566665544333222233333211111
Q ss_pred cc-----ccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHh----hCCCcEEEecC
Q 036378 384 KA-----QLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLC----DNSISVKSYHS 454 (815)
Q Consensus 384 ~~-----~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~----~~g~~v~~~h~ 454 (815)
.. ..+..+.......+... +...+..+++..+..++++|+++...+..++..|+ ...+.+..|.|
T Consensus 392 ~~~~~ryslp~~l~~~~vv~~~~~------kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~ 465 (620)
T KOG0350|consen 392 KPLIGRYSLPSSLSHRLVVTEPKF------KPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTG 465 (620)
T ss_pred cccceeeecChhhhhceeeccccc------chHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhh
Confidence 10 01111111111111111 11234466777788899999999999999998887 45677888999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHH
Q 036378 455 GIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRL 534 (815)
Q Consensus 455 ~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l 534 (815)
++..+.|.+.+++|..|+++||||+|+++||||+.+|+.||+||+|.+...|+||+||++|+|+.|+|+.+++..+...+
T Consensus 466 ~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F 545 (620)
T KOG0350|consen 466 QLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLF 545 (620)
T ss_pred hhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHhhh
Q 036378 535 RSLMY 539 (815)
Q Consensus 535 ~~~~~ 539 (815)
.+++.
T Consensus 546 ~klL~ 550 (620)
T KOG0350|consen 546 SKLLK 550 (620)
T ss_pred HHHHH
Confidence 77654
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.5e-39 Score=385.20 Aligned_cols=313 Identities=18% Similarity=0.225 Sum_probs=241.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHH
Q 036378 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDK------KSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQL 258 (815)
Q Consensus 188 ~l~~~l~~~~g~~~~~~~Q~~ai~~il~g------~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~ 258 (815)
.+.+.+...++| .||++|++||+.+..+ .+.|++||||||||++|++|++. .+.+++|++||++|+.|++
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHY 327 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHH
Confidence 344555566888 5999999999999986 48999999999999999999864 4779999999999999999
Q ss_pred HhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccC
Q 036378 259 RHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHN 333 (815)
Q Consensus 259 ~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~ 333 (815)
+.+.+. ++...+.++....+....+..+..|+++|+|+||+.+... .. +.++++|||||+|++.. .
T Consensus 328 ~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~-----v~-~~~l~lvVIDE~Hrfg~---~ 398 (681)
T PRK10917 328 ENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD-----VE-FHNLGLVIIDEQHRFGV---E 398 (681)
T ss_pred HHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc-----ch-hcccceEEEechhhhhH---H
Confidence 998873 5667888888888889999999999999999999988542 12 67899999999998742 2
Q ss_pred chHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCcccee-eccccCCCeeEEEEecCCccchhhhhhHHH
Q 036378 334 FRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLI-QKAQLRDNLQLSVSLSGNNRQNERSAYVDE 412 (815)
Q Consensus 334 fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~ 412 (815)
.|.. +......+++++||||+.+++..... .+......+ ..+..+.++...+...... ...++.
T Consensus 399 qr~~--------l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~~~~~-----~~~~~~ 463 (681)
T PRK10917 399 QRLA--------LREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVIPDSRR-----DEVYER 463 (681)
T ss_pred HHHH--------HHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEeCcccH-----HHHHHH
Confidence 2221 22333457899999999988764322 222222222 2223344444433322211 111222
Q ss_pred HHHHHhhccccceEEEecch--------HHHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccc
Q 036378 413 VFSFHRSSKHYYILQISGKH--------FETDLISRYLCDN--SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482 (815)
Q Consensus 413 l~~l~~~~~~~~~ivf~~s~--------~~~e~l~~~L~~~--g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~ 482 (815)
+... ..++.++++||+.. ..++.+++.|.+. ++.+..+||+|++++|.+++++|++|+++|||||+++
T Consensus 464 i~~~--~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 541 (681)
T PRK10917 464 IREE--IAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVI 541 (681)
T ss_pred HHHH--HHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcce
Confidence 2222 23567899999853 4567778888765 5789999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEec
Q 036378 483 GMGLDKRDVGAVIHYSLPE-SLEEYVQEIGRAGRDGRLSYCHLFLD 527 (815)
Q Consensus 483 ~~GID~p~v~~VI~~d~P~-s~~~y~Qr~GRaGR~g~~g~~i~l~~ 527 (815)
++|||+|++++||+++.|. ++..|+|++||+||+|..|+|+++++
T Consensus 542 e~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 542 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999999997 68899999999999999999999995
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.4e-39 Score=386.58 Aligned_cols=337 Identities=20% Similarity=0.250 Sum_probs=244.2
Q ss_pred ccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCChhHHHHHHHHHHH----c
Q 036378 166 TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKM-VLDKKSTMLVLPTGAGKSLCYQIPAMI----L 240 (815)
Q Consensus 166 ~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~-il~g~d~li~apTGsGKTl~~~lp~l~----~ 240 (815)
+|+++++++.+.+.+.+ .||.+|+|+|.++++. ++.|+|+++++|||||||++|.+|++. .
T Consensus 2 ~~~~l~l~~~~~~~l~~--------------~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~ 67 (720)
T PRK00254 2 KVDELRVDERIKRVLKE--------------RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE 67 (720)
T ss_pred cHHHcCCCHHHHHHHHh--------------CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc
Confidence 46778888888888888 7999999999999986 789999999999999999999999874 3
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC----CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcc
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP----VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLI 316 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~----~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i 316 (815)
++++|+|+|+++|+.|+++.+.. +++...+.+...... +. .++++|+|+|||++.......... +.++
T Consensus 68 ~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~-----~~--~~~~~IiV~Tpe~~~~ll~~~~~~-l~~l 139 (720)
T PRK00254 68 GGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTD-----EW--LGKYDIIIATAEKFDSLLRHGSSW-IKDV 139 (720)
T ss_pred CCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCch-----hh--hccCCEEEEcHHHHHHHHhCCchh-hhcC
Confidence 67999999999999999988875 244444444443221 11 146899999999997654332222 6789
Q ss_pred cEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEE
Q 036378 317 SLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVS 396 (815)
Q Consensus 317 ~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~ 396 (815)
++|||||+|.+.++ ++.+.+..+ +.......|++++|||++. ..++.+|++.... .....+.++...+.
T Consensus 140 ~lvViDE~H~l~~~--~rg~~le~i----l~~l~~~~qiI~lSATl~n--~~~la~wl~~~~~---~~~~rpv~l~~~~~ 208 (720)
T PRK00254 140 KLVVADEIHLIGSY--DRGATLEMI----LTHMLGRAQILGLSATVGN--AEELAEWLNAELV---VSDWRPVKLRKGVF 208 (720)
T ss_pred CEEEEcCcCccCCc--cchHHHHHH----HHhcCcCCcEEEEEccCCC--HHHHHHHhCCccc---cCCCCCCcceeeEe
Confidence 99999999999876 344444444 3334456799999999975 3567788865421 11111112211111
Q ss_pred e-----cCCccc-hhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhC-------------------------
Q 036378 397 L-----SGNNRQ-NERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDN------------------------- 445 (815)
Q Consensus 397 ~-----~~~~~~-~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~------------------------- 445 (815)
. ..+... .........+..... .+.+++|||++++.|+.++..|...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (720)
T PRK00254 209 YQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPT 286 (720)
T ss_pred cCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Confidence 1 011000 000111122222222 4678999999999999888666421
Q ss_pred --------CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE-------eCCCC-CHHHHHHH
Q 036378 446 --------SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH-------YSLPE-SLEEYVQE 509 (815)
Q Consensus 446 --------g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~-------~d~P~-s~~~y~Qr 509 (815)
..++.+|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ ++.|. +..+|.||
T Consensus 287 ~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm 366 (720)
T PRK00254 287 NEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQM 366 (720)
T ss_pred cHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHh
Confidence 235899999999999999999999999999999999999999999999994 55554 67899999
Q ss_pred HcccCCCC--CCceEEEEeccccH-HHHHHh
Q 036378 510 IGRAGRDG--RLSYCHLFLDDITY-FRLRSL 537 (815)
Q Consensus 510 ~GRaGR~g--~~g~~i~l~~~~d~-~~l~~~ 537 (815)
+|||||.| ..|.|+++....+. ..++++
T Consensus 367 ~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~ 397 (720)
T PRK00254 367 MGRAGRPKYDEVGEAIIVATTEEPSKLMERY 397 (720)
T ss_pred hhccCCCCcCCCceEEEEecCcchHHHHHHH
Confidence 99999965 56999999976552 334444
No 48
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=5.5e-40 Score=409.50 Aligned_cols=332 Identities=16% Similarity=0.162 Sum_probs=256.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcCCC
Q 036378 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLPPV 264 (815)
Q Consensus 188 ~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~~ 264 (815)
.+.+.+++.+|| +|+++|+++|+.+++|+|++++||||+|||++++++++.. +.++|||+||++||.|+++.+...
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l 145 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESF 145 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHH
Confidence 456788888999 6999999999999999999999999999999888877644 668999999999999999999872
Q ss_pred -------ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEecccccccccc-----
Q 036378 265 -------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSH----- 332 (815)
Q Consensus 265 -------~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~----- 332 (815)
+....++++++..+....++.+..|+++|||+||++|.+.... +. ..++++|||||||||++|||
T Consensus 146 ~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~--l~-~~~i~~iVVDEAD~ml~~~knid~~ 222 (1638)
T PRK14701 146 CEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE--MK-HLKFDFIFVDDVDAFLKASKNIDRS 222 (1638)
T ss_pred HhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH--Hh-hCCCCEEEEECceeccccccccchh
Confidence 3446677888888877788888899999999999998765322 22 25799999999999999999
Q ss_pred ----CchHHHHHHHHHHHH----------------------Hhcccce-eEeeecccChhHHHHHHHHhcCCccceeecc
Q 036378 333 ----NFRPSYMRLRASLLR----------------------ARLNVEC-ILAMTATATTTTLRDVMSALEIPLSNLIQKA 385 (815)
Q Consensus 333 ----~fr~~~~~i~~~~~~----------------------~~~~~~~-vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~ 385 (815)
+|++++......+++ ......+ ++++|||.++. .++...+.... .+..+
T Consensus 223 L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l--~f~v~ 298 (1638)
T PRK14701 223 LQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRELL--GFEVG 298 (1638)
T ss_pred hhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcCe--EEEec
Confidence 899999751111111 1122334 56789998864 22233332221 12222
Q ss_pred ccCCC---eeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHH---HHHHHHHHhhCCCcEEEecCCCCHH
Q 036378 386 QLRDN---LQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE---TDLISRYLCDNSISVKSYHSGIPAK 459 (815)
Q Consensus 386 ~~~~~---l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~---~e~l~~~L~~~g~~v~~~h~~~~~~ 459 (815)
..+.+ +...........+ ..+..++... +..++|||++++. ++.+++.|.+.|+.+..+||+
T Consensus 299 ~~~~~lr~i~~~yi~~~~~~k-------~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~---- 366 (1638)
T PRK14701 299 SGRSALRNIVDVYLNPEKIIK-------EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK---- 366 (1638)
T ss_pred CCCCCCCCcEEEEEECCHHHH-------HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch----
Confidence 32332 3222222211111 1233444444 4688999999876 589999999999999999995
Q ss_pred HHHHHHHHHhcCCceEEEEcc----ccccccccCC-ccEEEEeCCCC---CHHHHHHHH-------------cccCCCCC
Q 036378 460 DRSRIQELFCSNKIRVVVATV----AFGMGLDKRD-VGAVIHYSLPE---SLEEYVQEI-------------GRAGRDGR 518 (815)
Q Consensus 460 ~R~~i~~~F~~g~~~VLVaT~----~~~~GID~p~-v~~VI~~d~P~---s~~~y~Qr~-------------GRaGR~g~ 518 (815)
|..++++|++|+++|||||+ +++||||+|+ |++|||||+|+ +++.|.|.. |||||+|.
T Consensus 367 -R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 367 -NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred -HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCC
Confidence 88999999999999999995 7889999999 99999999999 999998887 99999999
Q ss_pred CceEEEEeccccHHHHHHhhhc
Q 036378 519 LSYCHLFLDDITYFRLRSLMYS 540 (815)
Q Consensus 519 ~g~~i~l~~~~d~~~l~~~~~~ 540 (815)
++.+++.+..++...++.++..
T Consensus 446 ~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 446 PIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred cchhHHHhHHHHHHHHHHHhcc
Confidence 9999988888888888888643
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.4e-39 Score=391.95 Aligned_cols=312 Identities=18% Similarity=0.165 Sum_probs=239.4
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHHHHHHHHH
Q 036378 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDK------KSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVALMIDQLR 259 (815)
Q Consensus 189 l~~~l~~~~g~~~~~~~Q~~ai~~il~g------~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~L~~q~~~ 259 (815)
........|+| .+|+.|.+||+.++.+ +|+|++++||+|||++|+.+++ ..+.+++||+||++|+.|+++
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~ 667 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH
Confidence 33444445788 6999999999999987 8999999999999999988875 348899999999999999999
Q ss_pred hcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCc
Q 036378 260 HLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNF 334 (815)
Q Consensus 260 ~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~f 334 (815)
.+.+. ++...+.+..+..+....+..+..|.++|||+||+.+.. .+. +.++++|||||+|++. ..+
T Consensus 668 ~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~-----~v~-~~~L~lLVIDEahrfG---~~~ 738 (1147)
T PRK10689 668 NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQS-----DVK-WKDLGLLIVDEEHRFG---VRH 738 (1147)
T ss_pred HHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhC-----CCC-HhhCCEEEEechhhcc---hhH
Confidence 98762 344566677777787878888888999999999975532 122 5689999999999972 221
Q ss_pred hHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeecc-ccCCCeeEEEEecCCccchhhhhhHHHH
Q 036378 335 RPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA-QLRDNLQLSVSLSGNNRQNERSAYVDEV 413 (815)
Q Consensus 335 r~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~v~~~~~~~~~~~~~~~~~l 413 (815)
. ..++......++++||||+.+++.......+. ....+... ..+.++...+..... .. ...
T Consensus 739 ----~----e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~--d~~~I~~~p~~r~~v~~~~~~~~~--~~----~k~-- 800 (1147)
T PRK10689 739 ----K----ERIKAMRADVDILTLTATPIPRTLNMAMSGMR--DLSIIATPPARRLAVKTFVREYDS--LV----VRE-- 800 (1147)
T ss_pred ----H----HHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCC--CcEEEecCCCCCCCceEEEEecCc--HH----HHH--
Confidence 1 22345566789999999999998765554432 22333222 222333332222111 00 001
Q ss_pred HHHHhhccccceEEEecchHHHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCc
Q 036378 414 FSFHRSSKHYYILQISGKHFETDLISRYLCDN--SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491 (815)
Q Consensus 414 ~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v 491 (815)
..+.+...++++++||++++.++.+++.|.+. ++.+..+||+|++++|.+++.+|++|+++|||||+++++|||+|+|
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v 880 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccC
Confidence 11223345678999999999999999999987 7899999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCC-CCHHHHHHHHcccCCCCCCceEEEEecc
Q 036378 492 GAVIHYSLP-ESLEEYVQEIGRAGRDGRLSYCHLFLDD 528 (815)
Q Consensus 492 ~~VI~~d~P-~s~~~y~Qr~GRaGR~g~~g~~i~l~~~ 528 (815)
++||..+.. .++..|+|++||+||.|+.|+|++++.+
T Consensus 881 ~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 999954443 3567899999999999999999999854
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=9e-39 Score=376.21 Aligned_cols=308 Identities=17% Similarity=0.214 Sum_probs=234.4
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCC
Q 036378 193 LRLVYGYDSFRDGQLEAIKMVLDK------KSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 193 l~~~~g~~~~~~~Q~~ai~~il~g------~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
+...++| +||+.|++||+.|+.+ .+.|++||||||||++|++|++. .+.+++|++||++|+.|+++.+.+
T Consensus 228 ~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 228 FLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred HHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHH
Confidence 3344798 7999999999999976 35899999999999999999864 478999999999999999998876
Q ss_pred C-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHH
Q 036378 264 V-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSY 338 (815)
Q Consensus 264 ~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~ 338 (815)
. ++...+.++....+....+..+..|+++|+|+||+.+... .. +.++++|||||+|++. ...|..+
T Consensus 307 l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~-----~~-~~~l~lvVIDEaH~fg---~~qr~~l 377 (630)
T TIGR00643 307 LLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK-----VE-FKRLALVIIDEQHRFG---VEQRKKL 377 (630)
T ss_pred HhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-----cc-ccccceEEEechhhcc---HHHHHHH
Confidence 3 5667788888888888889999999999999999987542 22 6789999999999864 2333222
Q ss_pred HHHHHHHHHHhc--ccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHH
Q 036378 339 MRLRASLLRARL--NVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF 416 (815)
Q Consensus 339 ~~i~~~~~~~~~--~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l 416 (815)
..... ..+++++||||+.++...... .-.+....+...+..+.++...+...... ...+. .+
T Consensus 378 -------~~~~~~~~~~~~l~~SATp~prtl~l~~-~~~l~~~~i~~~p~~r~~i~~~~~~~~~~-----~~~~~---~i 441 (630)
T TIGR00643 378 -------REKGQGGFTPHVLVMSATPIPRTLALTV-YGDLDTSIIDELPPGRKPITTVLIKHDEK-----DIVYE---FI 441 (630)
T ss_pred -------HHhcccCCCCCEEEEeCCCCcHHHHHHh-cCCcceeeeccCCCCCCceEEEEeCcchH-----HHHHH---HH
Confidence 11111 256899999999887654321 11111111111122234444433322111 11121 12
Q ss_pred Hhh-ccccceEEEecch--------HHHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccc
Q 036378 417 HRS-SKHYYILQISGKH--------FETDLISRYLCD--NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485 (815)
Q Consensus 417 ~~~-~~~~~~ivf~~s~--------~~~e~l~~~L~~--~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~G 485 (815)
.+. .++.++++||+.. ..++.+++.|.+ .++.+..+||+|++++|.+++++|++|+.+|||||+++++|
T Consensus 442 ~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 521 (630)
T TIGR00643 442 EEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521 (630)
T ss_pred HHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecC
Confidence 222 3467888898765 456777788876 37889999999999999999999999999999999999999
Q ss_pred cccCCccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEe
Q 036378 486 LDKRDVGAVIHYSLPE-SLEEYVQEIGRAGRDGRLSYCHLFL 526 (815)
Q Consensus 486 ID~p~v~~VI~~d~P~-s~~~y~Qr~GRaGR~g~~g~~i~l~ 526 (815)
||+|++++||+++.|. ++..|+|++||+||.|+.|+|++++
T Consensus 522 vDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 522 VDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred cccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999999997 7899999999999999999999999
No 51
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-40 Score=357.82 Aligned_cols=342 Identities=21% Similarity=0.267 Sum_probs=261.0
Q ss_pred ccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---------
Q 036378 170 LELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--------- 240 (815)
Q Consensus 170 l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--------- 240 (815)
..+.+.+++.+.. .||..|+|+|.+|||.++.++++++++|||+|||++|.+|++..
T Consensus 141 ~~~~~~ll~nl~~--------------~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~ 206 (593)
T KOG0344|consen 141 YSMNKRLLENLQE--------------LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKH 206 (593)
T ss_pred hhhcHHHHHhHhh--------------CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccC
Confidence 5677777888877 69999999999999999999999999999999999999999854
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCCc--eeeee-----ccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhh-
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPVI--HGGFL-----SSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF- 310 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~~--~~~~i-----~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~- 310 (815)
+-+++|++|+++|+.|.+.++.++. .+... ............ +....++|+++||-++...+-....
T Consensus 207 ~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~---~~~~k~dili~TP~ri~~~~~~~~~~ 283 (593)
T KOG0344|consen 207 KVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAF---LSDEKYDILISTPMRIVGLLGLGKLN 283 (593)
T ss_pred ccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccch---hHHHHHHHHhcCHHHHHHHhcCCCcc
Confidence 4579999999999999999998854 22111 111111111111 1112589999999998776555431
Q ss_pred hhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHh-cccceeEeeecccChhHHHHHHHHhcCCccceeecc-ccC
Q 036378 311 TATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR-LNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA-QLR 388 (815)
Q Consensus 311 ~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~-~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~ 388 (815)
..+..|.++|+||||.+.+- ..|+.....+ +... .+...+-+||||.+..+.+-+...+......++... ...
T Consensus 284 idl~~V~~lV~dEaD~lfe~-~~f~~Qla~I----~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~ 358 (593)
T KOG0344|consen 284 IDLSKVEWLVVDEADLLFEP-EFFVEQLADI----YSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSAN 358 (593)
T ss_pred chhheeeeEeechHHhhhCh-hhHHHHHHHH----HHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHh
Confidence 12778999999999999763 2455555444 3332 245577889999998887655555544433333221 111
Q ss_pred CCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHH-hhCCCcEEEecCCCCHHHHHHHHHH
Q 036378 389 DNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYL-CDNSISVKSYHSGIPAKDRSRIQEL 467 (815)
Q Consensus 389 ~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L-~~~g~~v~~~h~~~~~~~R~~i~~~ 467 (815)
..+......+.... ..+..+..+....-..+++||+.+.+.+.+|...| .-.++.+.++||..++.+|++++++
T Consensus 359 ~~V~QelvF~gse~-----~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 359 ETVDQELVFCGSEK-----GKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred hhhhhhheeeecch-----hHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHH
Confidence 11222222222111 12233345555556789999999999999999999 7889999999999999999999999
Q ss_pred HhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 468 F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
|+.|+++|||||++++||||+.+|+.||+||+|.+.-+|+||+||+||.|+.|.+++||+++|...++.++
T Consensus 434 FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~ia 504 (593)
T KOG0344|consen 434 FRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIA 504 (593)
T ss_pred HhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988764
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.5e-38 Score=375.36 Aligned_cols=339 Identities=19% Similarity=0.223 Sum_probs=242.6
Q ss_pred ccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCC
Q 036378 166 TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPG 242 (815)
Q Consensus 166 ~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~ 242 (815)
.|+++++++++++.+.. .||. ++|+|.++++.+.+|+++++++|||||||+++.++++. .++
T Consensus 2 ~~~~~~l~~~~~~~~~~--------------~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~ 66 (674)
T PRK01172 2 KISDLGYDDEFLNLFTG--------------NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGL 66 (674)
T ss_pred cHhhcCCCHHHHHHHhh--------------CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCC
Confidence 46778899999998887 5876 99999999999999999999999999999999998764 378
Q ss_pred cEEEEcccHHHHHHHHHhcCCC----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 243 LTLVVCPLVALMIDQLRHLPPV----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 243 ~~lVl~P~~~L~~q~~~~l~~~----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
++|+|+|+++|+.|+++.+.++ .......+...... ..+ ..++|+|+|||++.......... +.++++
T Consensus 67 k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~-----~~~--~~~dIiv~Tpek~~~l~~~~~~~-l~~v~l 138 (674)
T PRK01172 67 KSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPP-----DFI--KRYDVVILTSEKADSLIHHDPYI-INDVGL 138 (674)
T ss_pred cEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCCh-----hhh--ccCCEEEECHHHHHHHHhCChhH-HhhcCE
Confidence 8999999999999999988752 22222222222111 111 25799999999987765443332 678999
Q ss_pred EEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEec
Q 036378 319 VVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLS 398 (815)
Q Consensus 319 lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~ 398 (815)
|||||||++.+. ++.+.+..++ ..++...+..+++++|||++. ..++.+|++... +.......++...+...
T Consensus 139 vViDEaH~l~d~--~rg~~le~ll-~~~~~~~~~~riI~lSATl~n--~~~la~wl~~~~---~~~~~r~vpl~~~i~~~ 210 (674)
T PRK01172 139 IVADEIHIIGDE--DRGPTLETVL-SSARYVNPDARILALSATVSN--ANELAQWLNASL---IKSNFRPVPLKLGILYR 210 (674)
T ss_pred EEEecchhccCC--CccHHHHHHH-HHHHhcCcCCcEEEEeCccCC--HHHHHHHhCCCc---cCCCCCCCCeEEEEEec
Confidence 999999999865 3444555543 334444567799999999865 356778886542 22222222333222211
Q ss_pred CC----ccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhC-------------------------CCcE
Q 036378 399 GN----NRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDN-------------------------SISV 449 (815)
Q Consensus 399 ~~----~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~-------------------------g~~v 449 (815)
.. ............+... ...+++++|||++++.++.++..|... ..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~i~~~--~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv 288 (674)
T PRK01172 211 KRLILDGYERSQVDINSLIKET--VNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGV 288 (674)
T ss_pred CeeeecccccccccHHHHHHHH--HhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCE
Confidence 10 0000000011111111 234678999999999999999988653 1258
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCC---------CCCHHHHHHHHcccCCCCC--
Q 036378 450 KSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSL---------PESLEEYVQEIGRAGRDGR-- 518 (815)
Q Consensus 450 ~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~---------P~s~~~y~Qr~GRaGR~g~-- 518 (815)
.++||+|+.++|..+++.|++|.++|||||+++++|||+|+.++|| .+. |.+..+|.||+|||||.|.
T Consensus 289 ~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~ 367 (674)
T PRK01172 289 AFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQ 367 (674)
T ss_pred EEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 8999999999999999999999999999999999999999865555 343 4588999999999999985
Q ss_pred CceEEEEeccc-cHHHHHHhh
Q 036378 519 LSYCHLFLDDI-TYFRLRSLM 538 (815)
Q Consensus 519 ~g~~i~l~~~~-d~~~l~~~~ 538 (815)
.|.+++++... ++..+++++
T Consensus 368 ~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 368 YGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred cceEEEEecCcccHHHHHHHH
Confidence 57788876543 456666665
No 53
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-39 Score=335.43 Aligned_cols=345 Identities=19% Similarity=0.243 Sum_probs=274.5
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
-.|..++|...++++|... ||..|+|+|++.||.+|+++|++..+-||||||.||++|++..
T Consensus 21 g~fqsmgL~~~v~raI~kk--------------g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~ 86 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKK--------------GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH 86 (529)
T ss_pred CCccccCCCHHHHHHHHHh--------------hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhc
Confidence 4678899999999999995 9999999999999999999999999999999999999999854
Q ss_pred ---CCcEEEEcccHHHHHHHHHhcCCCceeeeeccC--CChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCc
Q 036378 241 ---PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSS--QRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315 (815)
Q Consensus 241 ---~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~--~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~ 315 (815)
+-++++++||++|+.|..+.++...++..+... .......+++..+. ++.|||++||+++......-.+. ++.
T Consensus 87 s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~-~npDii~ATpgr~~h~~vem~l~-l~s 164 (529)
T KOG0337|consen 87 SQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN-ENPDIIIATPGRLLHLGVEMTLT-LSS 164 (529)
T ss_pred cccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc-cCCCEEEecCceeeeeehheecc-ccc
Confidence 468999999999999999988875554444333 23334555555554 35899999999998865554444 889
Q ss_pred ccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCcccee-eccccCCCeeEE
Q 036378 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLI-QKAQLRDNLQLS 394 (815)
Q Consensus 316 i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~ 394 (815)
+.+||+||||++.++ +|.+...++ +...+...|.++||||.+..........+..|....+ ......+.+...
T Consensus 165 veyVVfdEadrlfem--gfqeql~e~----l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~ 238 (529)
T KOG0337|consen 165 VEYVVFDEADRLFEM--GFQEQLHEI----LSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVR 238 (529)
T ss_pred eeeeeehhhhHHHhh--hhHHHHHHH----HHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhh
Confidence 999999999999987 777777766 4455667799999999998876655554443322111 112222333332
Q ss_pred EEecCCccchhhhhhHHHHHHHH-hhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCc
Q 036378 395 VSLSGNNRQNERSAYVDEVFSFH-RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKI 473 (815)
Q Consensus 395 v~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~ 473 (815)
........+ ...|..++ ......++++||.|+.+++.+...|+..|+.+..+.|.|++..|..-..+|..++.
T Consensus 239 f~~~~~a~K------~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~ 312 (529)
T KOG0337|consen 239 FFRVRKAEK------EAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKT 312 (529)
T ss_pred eeeeccHHH------HHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCcc
Confidence 222222221 11122222 23345679999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 474 RVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 474 ~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
.++|.|++++||+|+|-.+.||+||+|.+..-|+||+||+.|.|+.|.+|.|+.+.|...+-.+
T Consensus 313 ~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 313 SILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred ceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999887766554
No 54
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.7e-37 Score=357.70 Aligned_cols=320 Identities=21% Similarity=0.245 Sum_probs=251.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----------CCcEEEEcccHHHHHHHHHhcCC---
Q 036378 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-----------PGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 198 g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-----------~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.|.+|||.|.+||+.+.+|+++|++||||||||+++.+|++.. +-.||+|+|++||.+|+..+|..
T Consensus 19 ~~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~ 98 (814)
T COG1201 19 KFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLR 98 (814)
T ss_pred hcCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999743 13599999999999999999986
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhh-hhhhhcCcccEEEEeccccccccccCchHHHHH
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL-SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMR 340 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~-~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~ 340 (815)
++.....++.+...+...+.. ..++|||+|||.|.-.+.. .....+.++.++||||.|.+.+ +-|...+.
T Consensus 99 ~~G~~v~vRhGDT~~~er~r~~~----~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~---sKRG~~Ls 171 (814)
T COG1201 99 ELGIEVAVRHGDTPQSEKQKMLK----NPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE---SKRGVQLA 171 (814)
T ss_pred HcCCccceecCCCChHHhhhccC----CCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc---cccchhhh
Confidence 445555666666665554433 4699999999999765444 3333478999999999999976 45555555
Q ss_pred HHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCc-cceeeccccCCCeeEEEEecCCccch---hhhhhHHHHHHH
Q 036378 341 LRASLLRARLNVECILAMTATATTTTLRDVMSALEIPL-SNLIQKAQLRDNLQLSVSLSGNNRQN---ERSAYVDEVFSF 416 (815)
Q Consensus 341 i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~~v~~~~~~~~~---~~~~~~~~l~~l 416 (815)
+--.-++...+..|.|++|||..+. ..+.++|.... ...+.......+..+.+......... .....+..+..+
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~ 249 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAEL 249 (814)
T ss_pred hhHHHHHhhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHH
Confidence 5334444444578999999998854 55788886554 33344444555666665554443221 122233334444
Q ss_pred HhhccccceEEEecchHHHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEE
Q 036378 417 HRSSKHYYILQISGKHFETDLISRYLCDNS-ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI 495 (815)
Q Consensus 417 ~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g-~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI 495 (815)
.+. +..++||+|||..+|.++..|++.+ ..+..+||.++.+.|..+.++|++|+.+++|||..++.|||+.+|+.||
T Consensus 250 v~~--~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVI 327 (814)
T COG1201 250 VKK--HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVI 327 (814)
T ss_pred Hhh--cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEE
Confidence 433 3478999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHcccCCC-CCCceEEEEecc
Q 036378 496 HYSLPESLEEYVQEIGRAGRD-GRLSYCHLFLDD 528 (815)
Q Consensus 496 ~~d~P~s~~~y~Qr~GRaGR~-g~~g~~i~l~~~ 528 (815)
|++.|.++..+.||+||+|+. |..+.++++..+
T Consensus 328 q~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 328 QLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred EeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999975 666888888766
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.1e-36 Score=366.88 Aligned_cols=297 Identities=21% Similarity=0.260 Sum_probs=208.9
Q ss_pred EEcCCChhHHHHHHHHHHHc----------------CCcEEEEcccHHHHHHHHHhcCC-----------------Ccee
Q 036378 221 LVLPTGAGKSLCYQIPAMIL----------------PGLTLVVCPLVALMIDQLRHLPP-----------------VIHG 267 (815)
Q Consensus 221 i~apTGsGKTl~~~lp~l~~----------------~~~~lVl~P~~~L~~q~~~~l~~-----------------~~~~ 267 (815)
+++|||||||+||.+|++.. +.++|||+|+++|+.|+.++|+. .+..
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 47999999999999998632 35799999999999999998753 2334
Q ss_pred eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccc--cccCchHHHHHHHHHH
Q 036378 268 GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSE--WSHNFRPSYMRLRASL 345 (815)
Q Consensus 268 ~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~--~g~~fr~~~~~i~~~~ 345 (815)
...++.....+.... ....++|||+|||+|...+.......+.++++|||||+|.+.+ +|..+...+.++
T Consensus 81 ~vrtGDt~~~eR~rl----l~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL---- 152 (1490)
T PRK09751 81 GIRTGDTPAQERSKL----TRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERL---- 152 (1490)
T ss_pred EEEECCCCHHHHHHH----hcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHH----
Confidence 445555554444332 2235899999999998754433323478999999999999985 344444444444
Q ss_pred HHHhcccceeEeeecccChhHHHHHHHHhcCCcc-ceeeccccC-CCeeEEEEecCCccch--------------hhhhh
Q 036378 346 LRARLNVECILAMTATATTTTLRDVMSALEIPLS-NLIQKAQLR-DNLQLSVSLSGNNRQN--------------ERSAY 409 (815)
Q Consensus 346 ~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~-~~~~~~~~~-~~l~~~v~~~~~~~~~--------------~~~~~ 409 (815)
........|+|++|||..+. +++.+++..... .++.....+ ..+.+.+ ...+.... .....
T Consensus 153 ~~l~~~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i 229 (1490)
T PRK09751 153 DALLHTSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSI 229 (1490)
T ss_pred HHhCCCCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhh
Confidence 33334567999999999873 568888865422 233322222 1222222 11111000 00000
Q ss_pred HHHH-HHHH-hhccccceEEEecchHHHHHHHHHHhhCC---------------------------------CcEEEecC
Q 036378 410 VDEV-FSFH-RSSKHYYILQISGKHFETDLISRYLCDNS---------------------------------ISVKSYHS 454 (815)
Q Consensus 410 ~~~l-~~l~-~~~~~~~~ivf~~s~~~~e~l~~~L~~~g---------------------------------~~v~~~h~ 454 (815)
...+ ..++ ....+.++||||||++.|+.++..|++.. +.+..|||
T Consensus 230 ~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHG 309 (1490)
T PRK09751 230 WPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHG 309 (1490)
T ss_pred hHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccc
Confidence 0001 1122 22356789999999999999999997631 22678999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC-CCCceEEEEecc
Q 036378 455 GIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD-GRLSYCHLFLDD 528 (815)
Q Consensus 455 ~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~-g~~g~~i~l~~~ 528 (815)
+|+.++|..+++.|++|++++||||+.+++|||+++|++||+++.|.++.+|+||+|||||. |..+.++++...
T Consensus 310 sLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~ 384 (1490)
T PRK09751 310 SVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT 384 (1490)
T ss_pred cCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc
Confidence 99999999999999999999999999999999999999999999999999999999999996 445666655443
No 56
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.3e-35 Score=343.58 Aligned_cols=322 Identities=16% Similarity=0.087 Sum_probs=215.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCC-CEEEEcCCChhHHHHHHHHHHHc-----CCcEEE-EcccHHHHHHHHHhcC
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKK-STMLVLPTGAGKSLCYQIPAMIL-----PGLTLV-VCPLVALMIDQLRHLP 262 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~-d~li~apTGsGKTl~~~lp~l~~-----~~~~lV-l~P~~~L~~q~~~~l~ 262 (815)
.+......||. |+|+|+++|+.++.|+ ++++.+|||||||.++.++.+.. ..+.|| ++|+++|+.|+++.+.
T Consensus 5 ~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 5 DEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHH
Confidence 44556667999 9999999999999998 67778999999999765444422 234555 7799999999999887
Q ss_pred CCcee-------------------------eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhh---------
Q 036378 263 PVIHG-------------------------GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS--------- 308 (815)
Q Consensus 263 ~~~~~-------------------------~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~--------- 308 (815)
+..+. ..+...+++.....++..+..+ ++|||+|++.+.+.....
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~-p~IIVgT~D~i~sr~L~~gYg~~~~~~ 162 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHR-PAVIVGTVDMIGSRLLFSGYGCGFKSR 162 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCC-CcEEEECHHHHcCCccccccccccccc
Confidence 63221 1111112333444566666655 899999987765533210
Q ss_pred --hhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHh-cccceeEeeecccChhHHHHHHHHhcCCccceeec-
Q 036378 309 --IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR-LNVECILAMTATATTTTLRDVMSALEIPLSNLIQK- 384 (815)
Q Consensus 309 --~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~-~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~- 384 (815)
....+.++.+||+|||| ++. +|......|.....+.. ....|+++||||++.++.......+..+....+..
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~--gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEP--AFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cchhhhhccceEEEEehhh--hcc--ccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 00125689999999999 334 78888777744321110 11258999999998876654333332222111111
Q ss_pred cccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHH--
Q 036378 385 AQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRS-- 462 (815)
Q Consensus 385 ~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~-- 462 (815)
......+.. +...... ......+..+..+. .....+++|||||++.++.+++.|.+.++ ..+||+|++.+|.
T Consensus 239 ~l~a~ki~q-~v~v~~e--~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~ 312 (844)
T TIGR02621 239 RLAAKKIVK-LVPPSDE--KFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDL 312 (844)
T ss_pred cccccceEE-EEecChH--HHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhH
Confidence 111111121 1111111 11112222222222 23457899999999999999999999887 8999999999999
Q ss_pred ---HHHHHHhc----CC-------ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceE-EEEe
Q 036378 463 ---RIQELFCS----NK-------IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC-HLFL 526 (815)
Q Consensus 463 ---~i~~~F~~----g~-------~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~-i~l~ 526 (815)
+++++|++ |+ .+|||||+++++|||++. ++||++..| +++|+||+||+||.|+.|.+ +.++
T Consensus 313 ~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 313 VKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 88999987 44 789999999999999986 888887766 69999999999999986433 4444
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=8.2e-35 Score=356.67 Aligned_cols=307 Identities=17% Similarity=0.141 Sum_probs=221.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCCC
Q 036378 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPPV 264 (815)
Q Consensus 188 ~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~~ 264 (815)
...+.+++.+|+ .|+++|+.+++.++.|+|++++||||+|||.+++++++. .+.+++||+||++|+.|+++.+..+
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 345677788898 899999999999999999999999999999755444332 2688999999999999999999874
Q ss_pred ce-----eeeecc--CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccC----
Q 036378 265 IH-----GGFLSS--SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHN---- 333 (815)
Q Consensus 265 ~~-----~~~i~~--~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~---- 333 (815)
.. ...+.. .....+.......+..|.++|+|+||++|.+... .+. ...+++|||||||++++|+++
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~-~~~~~~lVvDEaD~~L~~~k~id~~ 223 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELP-KKKFDFVFVDDVDAVLKSSKNIDKL 223 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hcc-ccccCEEEEEChHHhhhcccchhhH
Confidence 22 122222 2234556666777888889999999999987543 232 456999999999999998765
Q ss_pred -----ch-HHHHHHHHHH----------------HHH----hcccceeEeeecccChhHHH-HH-HHHhcCCccceeecc
Q 036378 334 -----FR-PSYMRLRASL----------------LRA----RLNVECILAMTATATTTTLR-DV-MSALEIPLSNLIQKA 385 (815)
Q Consensus 334 -----fr-~~~~~i~~~~----------------~~~----~~~~~~vl~lSAT~~~~~~~-~i-~~~l~~~~~~~~~~~ 385 (815)
|. .++..+...+ ... .....|++++|||+++.... .+ ...+++. +-...
T Consensus 224 l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~---v~~~~ 300 (1176)
T PRK09401 224 LYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFE---VGSPV 300 (1176)
T ss_pred HHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEE---ecCcc
Confidence 53 3333332111 110 01156899999999876332 22 2222221 11111
Q ss_pred ccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHH---HHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 036378 386 QLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE---TDLISRYLCDNSISVKSYHSGIPAKDRS 462 (815)
Q Consensus 386 ~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~---~e~l~~~L~~~g~~v~~~h~~~~~~~R~ 462 (815)
....++........+ ....+..++..+. .+++|||++++. ++.+++.|...|+.+..+||+| .
T Consensus 301 ~~~rnI~~~yi~~~~--------k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~ 366 (1176)
T PRK09401 301 FYLRNIVDSYIVDED--------SVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----E 366 (1176)
T ss_pred cccCCceEEEEEccc--------HHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----H
Confidence 223444433333221 1122334444443 579999999877 9999999999999999999999 2
Q ss_pred HHHHHHhcCCceEEEE----ccccccccccCC-ccEEEEeCCCC------CHHHHHHHHcccCC
Q 036378 463 RIQELFCSNKIRVVVA----TVAFGMGLDKRD-VGAVIHYSLPE------SLEEYVQEIGRAGR 515 (815)
Q Consensus 463 ~i~~~F~~g~~~VLVa----T~~~~~GID~p~-v~~VI~~d~P~------s~~~y~Qr~GRaGR 515 (815)
+.+++|++|+++|||| |++++||||+|+ |++|||||+|. .-+.|.|++||+-.
T Consensus 367 ~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 367 RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 3459999999999999 699999999999 89999999999 66889999999974
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.3e-34 Score=334.09 Aligned_cols=304 Identities=17% Similarity=0.130 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCChhHHHH---------HHHHHHH---------cCCcEEEEcccHHHHHHHHHhcCCCc
Q 036378 204 DGQLEAIKMVLDKKSTMLVLPTGAGKSLC---------YQIPAMI---------LPGLTLVVCPLVALMIDQLRHLPPVI 265 (815)
Q Consensus 204 ~~Q~~ai~~il~g~d~li~apTGsGKTl~---------~~lp~l~---------~~~~~lVl~P~~~L~~q~~~~l~~~~ 265 (815)
.+|+++++.+++|+++|++|+||||||.+ |++|.+. ..++++|++|+++|+.|...++.+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 36999999999999999999999999986 4433332 14589999999999999888886521
Q ss_pred --------eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHH
Q 036378 266 --------HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPS 337 (815)
Q Consensus 266 --------~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~ 337 (815)
+.....++... ..........+|+++|+.... ..+.++++|||||||+++..+ ..
T Consensus 247 g~~~~~g~~v~v~~Gg~~~-----~~~~t~~k~~~Ilv~T~~L~l--------~~L~~v~~VVIDEaHEr~~~~----Dl 309 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPD-----ELINTNPKPYGLVFSTHKLTL--------NKLFDYGTVIIDEVHEHDQIG----DI 309 (675)
T ss_pred CccccCCceEEEEECCcch-----HHhhcccCCCCEEEEeCcccc--------cccccCCEEEccccccCccch----hH
Confidence 11222333331 111111124689999976321 126789999999999998653 12
Q ss_pred HHHHHHHHHHHhc-ccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCc--cch--hhhhhHHH
Q 036378 338 YMRLRASLLRARL-NVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNN--RQN--ERSAYVDE 412 (815)
Q Consensus 338 ~~~i~~~~~~~~~-~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~--~~~--~~~~~~~~ 412 (815)
... +++... ...|+++||||++.++. .+.+++..+....+.. ....++.......... ... ........
T Consensus 310 lL~----llk~~~~~~rq~ILmSATl~~dv~-~l~~~~~~p~~I~I~g-rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~ 383 (675)
T PHA02653 310 IIA----VARKHIDKIRSLFLMTATLEDDRD-RIKEFFPNPAFVHIPG-GTLFPISEVYVKNKYNPKNKRAYIEEEKKNI 383 (675)
T ss_pred HHH----HHHHhhhhcCEEEEEccCCcHhHH-HHHHHhcCCcEEEeCC-CcCCCeEEEEeecCcccccchhhhHHHHHHH
Confidence 222 233222 22489999999987754 3566665433222221 1112232222111100 000 00001111
Q ss_pred HHHHHhh--ccccceEEEecchHHHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHHH-hcCCceEEEEccccccccc
Q 036378 413 VFSFHRS--SKHYYILQISGKHFETDLISRYLCDN--SISVKSYHSGIPAKDRSRIQELF-CSNKIRVVVATVAFGMGLD 487 (815)
Q Consensus 413 l~~l~~~--~~~~~~ivf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~~R~~i~~~F-~~g~~~VLVaT~~~~~GID 487 (815)
+..+... ...+.++||++++.+++.+++.|.+. ++.+..+||+|++. ++++++| ++|+.+||||||++++|||
T Consensus 384 l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGID 461 (675)
T PHA02653 384 VTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVT 461 (675)
T ss_pred HHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhcccc
Confidence 1122222 23468999999999999999999987 79999999999974 4667777 6899999999999999999
Q ss_pred cCCccEEEEeC---CCC---------CHHHHHHHHcccCCCCCCceEEEEeccccHHH
Q 036378 488 KRDVGAVIHYS---LPE---------SLEEYVQEIGRAGRDGRLSYCHLFLDDITYFR 533 (815)
Q Consensus 488 ~p~v~~VI~~d---~P~---------s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~ 533 (815)
+|+|++||+++ .|. |.++|.||+|||||. ++|.|+.|+++++...
T Consensus 462 Ip~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 462 IRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKP 518 (675)
T ss_pred ccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHH
Confidence 99999999999 665 889999999999999 7999999999988643
No 59
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.9e-33 Score=309.53 Aligned_cols=298 Identities=19% Similarity=0.216 Sum_probs=205.2
Q ss_pred HHHHHHHHHHcCCC--EEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCCce---------eeeeccC
Q 036378 205 GQLEAIKMVLDKKS--TMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIH---------GGFLSSS 273 (815)
Q Consensus 205 ~Q~~ai~~il~g~d--~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~~~---------~~~i~~~ 273 (815)
+|.++++++.++.+ +++.+|||||||+||++|++.....+++++|+++|+.|+++.+...+. ...+.+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 49999999999885 788999999999999999998888999999999999999999877431 1112221
Q ss_pred CChHHHHHH-----------------HHHHhcCCceEEEeChhhhhchhhhh---h----hhhcCcccEEEEeccccccc
Q 036378 274 QRPEEVAET-----------------IRLIQVGAIKVLFVSPERFLNADFLS---I----FTATSLISLVVVDEAHCVSE 329 (815)
Q Consensus 274 ~~~~~~~~~-----------------~~~l~~g~~~Ili~TPe~L~~~~~~~---~----~~~~~~i~~lViDEaH~i~~ 329 (815)
...+.... -+.+....+.|++++|+.|....... . ...+..+++|||||+|+++.
T Consensus 81 -~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 81 -TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred -chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCc
Confidence 11111100 11122345789999999886432211 1 11146899999999999998
Q ss_pred cccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHH--hcCCccceeecc-----------------ccC--
Q 036378 330 WSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSA--LEIPLSNLIQKA-----------------QLR-- 388 (815)
Q Consensus 330 ~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~--l~~~~~~~~~~~-----------------~~~-- 388 (815)
|+.++...+... ..+++......+++++|||+++.+...+... ++.+.. .+... ..+
T Consensus 160 ~~~~~~~~~l~~-~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~-~v~g~~~~~~~~~~~~~~~~~~~~~~~ 237 (357)
T TIGR03158 160 KQLVGMLFLLAY-MQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIA-PIDGEKYQFPDNPELEADNKTQSFRPV 237 (357)
T ss_pred ccchhhhhhhHH-HHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceee-eecCcccccCCChhhhcccccccccee
Confidence 877777755555 2333333334689999999999887777665 222211 11111 001
Q ss_pred -CCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHH
Q 036378 389 -DNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNS--ISVKSYHSGIPAKDRSRIQ 465 (815)
Q Consensus 389 -~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g--~~v~~~h~~~~~~~R~~i~ 465 (815)
+++.+.+...............+.+....+...+.+++|||++++.++.+++.|++.+ +.+..+||.+++.+|.++
T Consensus 238 ~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~- 316 (357)
T TIGR03158 238 LPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA- 316 (357)
T ss_pred ccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh-
Confidence 2454444442211111111111222222223356789999999999999999999865 578899999999998754
Q ss_pred HHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccC
Q 036378 466 ELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAG 514 (815)
Q Consensus 466 ~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaG 514 (815)
++.+|||||++++||||++++ +|| ++ |.+.++|+||+||+|
T Consensus 317 -----~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 -----MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -----ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 378999999999999999987 666 45 899999999999997
No 60
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8.9e-34 Score=336.72 Aligned_cols=308 Identities=17% Similarity=0.111 Sum_probs=217.7
Q ss_pred HHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcCCCc--e-eeeeccCCChHHHHH
Q 036378 208 EAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLPPVI--H-GGFLSSSQRPEEVAE 281 (815)
Q Consensus 208 ~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~~~--~-~~~i~~~~~~~~~~~ 281 (815)
+++..+..+++++++|+||||||++|.++++.. +++++|+.|+++++.|+.+++.+.. . +..+...+....
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~--- 85 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN--- 85 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc---
Confidence 455566678999999999999999999998854 5789999999999999999886421 1 111111111111
Q ss_pred HHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEecccc-ccccccCchHHHHHHHHHHHHHhcccceeEeeec
Q 036378 282 TIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHC-VSEWSHNFRPSYMRLRASLLRARLNVECILAMTA 360 (815)
Q Consensus 282 ~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~-i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSA 360 (815)
....+.+|+|+||++|++.+... . .+.++++|||||+|. ..+- +|--.+. ..+.....+..++|+|||
T Consensus 86 ----~~s~~t~I~v~T~G~Llr~l~~d-~-~L~~v~~VIiDEaHER~L~~--Dl~L~ll---~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 86 ----KVSRRTRLEVVTEGILTRMIQDD-P-ELDGVGALIFDEFHERSLDA--DLGLALA---LDVQSSLREDLKILAMSA 154 (819)
T ss_pred ----ccCCCCcEEEECCcHHHHHHhhC-c-ccccCCEEEEeccchhhhcc--chHHHHH---HHHHHhcCCCceEEEEeC
Confidence 11235799999999998765443 2 378999999999996 4432 3332222 223333456779999999
Q ss_pred ccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHH
Q 036378 361 TATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISR 440 (815)
Q Consensus 361 T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~ 440 (815)
|+..... .++++... ++.......++...+........ ........+..++.. ..+.++||++++.+++.+++
T Consensus 155 Tl~~~~l---~~~l~~~~--vI~~~gr~~pVe~~y~~~~~~~~-~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~ 227 (819)
T TIGR01970 155 TLDGERL---SSLLPDAP--VVESEGRSFPVEIRYLPLRGDQR-LEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQE 227 (819)
T ss_pred CCCHHHH---HHHcCCCc--EEEecCcceeeeeEEeecchhhh-HHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHH
Confidence 9987753 44443221 22111111122222221111111 001111222233322 35789999999999999999
Q ss_pred HHhh---CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCC----------------
Q 036378 441 YLCD---NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPE---------------- 501 (815)
Q Consensus 441 ~L~~---~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~---------------- 501 (815)
.|.+ .++.+..+||+|+.++|.++++.|.+|+.+||||||++++|||+|+|++||++++|+
T Consensus 228 ~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 307 (819)
T TIGR01970 228 QLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETV 307 (819)
T ss_pred HHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEE
Confidence 9987 478999999999999999999999999999999999999999999999999999985
Q ss_pred --CHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 502 --SLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 502 --s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
|..+|.||+|||||. ++|.||.||+++++..+..+
T Consensus 308 ~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l~~~ 344 (819)
T TIGR01970 308 RISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRLPAQ 344 (819)
T ss_pred EECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhhhcC
Confidence 345799999999999 79999999999887666554
No 61
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=8.4e-34 Score=337.82 Aligned_cols=306 Identities=17% Similarity=0.119 Sum_probs=214.2
Q ss_pred HHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcCCC--ce-eeeeccCCChHHHHH
Q 036378 208 EAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLPPV--IH-GGFLSSSQRPEEVAE 281 (815)
Q Consensus 208 ~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~~--~~-~~~i~~~~~~~~~~~ 281 (815)
+++.++.++++++++|+||||||++|.++++.. .++++|++|+++++.|..+.+.+. .. +..+........
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~--- 88 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES--- 88 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc---
Confidence 455566678999999999999999999998864 468999999999999999988541 11 111111111111
Q ss_pred HHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecc
Q 036378 282 TIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361 (815)
Q Consensus 282 ~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT 361 (815)
....+.+|+|+||++|.+.+... . .+.++++|||||+|..+- ..++. +.+...+++...+..++++||||
T Consensus 89 ----~~~~~t~I~v~T~G~Llr~l~~d-~-~L~~v~~IIlDEaHER~l-~~Dl~---L~ll~~i~~~lr~~lqlilmSAT 158 (812)
T PRK11664 89 ----KVGPNTRLEVVTEGILTRMIQRD-P-ELSGVGLVILDEFHERSL-QADLA---LALLLDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred ----ccCCCCcEEEEChhHHHHHHhhC-C-CcCcCcEEEEcCCCcccc-ccchH---HHHHHHHHHhCCccceEEEEecC
Confidence 11124689999999998765432 2 378999999999997431 11222 22223334444567799999999
Q ss_pred cChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHH
Q 036378 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRY 441 (815)
Q Consensus 362 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~ 441 (815)
+..+.. .+++.... ++......-++............. .......+..++.. ..+.++||++++.+++.+++.
T Consensus 159 l~~~~l---~~~~~~~~--~I~~~gr~~pV~~~y~~~~~~~~~-~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 159 LDNDRL---QQLLPDAP--VIVSEGRSFPVERRYQPLPAHQRF-DEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred CCHHHH---HHhcCCCC--EEEecCccccceEEeccCchhhhH-HHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHH
Confidence 987643 44443222 221111111222222211111110 00111122222222 357899999999999999999
Q ss_pred Hhh---CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCC-----------------
Q 036378 442 LCD---NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPE----------------- 501 (815)
Q Consensus 442 L~~---~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~----------------- 501 (815)
|.+ .++.+..+||+|+.++|.++++.|.+|+.+||||||++++|||+|+|++||++++++
T Consensus 232 L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 311 (812)
T PRK11664 232 LASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQR 311 (812)
T ss_pred HHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEe
Confidence 987 678899999999999999999999999999999999999999999999999988775
Q ss_pred -CHHHHHHHHcccCCCCCCceEEEEeccccHHHH
Q 036378 502 -SLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRL 534 (815)
Q Consensus 502 -s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l 534 (815)
|.++|.||+|||||. .+|.||.||+++++..+
T Consensus 312 iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~l 344 (812)
T PRK11664 312 ISQASMTQRAGRAGRL-EPGICLHLYSKEQAERA 344 (812)
T ss_pred echhhhhhhccccCCC-CCcEEEEecCHHHHhhC
Confidence 346899999999999 69999999999877553
No 62
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.8e-33 Score=312.22 Aligned_cols=299 Identities=19% Similarity=0.161 Sum_probs=194.5
Q ss_pred CEEEEcCCChhHHHHHHHHHHH-----cCCcEEEEcccHHHHHHHHHhcCCCce--eeeeccCCCh---------HHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAMI-----LPGLTLVVCPLVALMIDQLRHLPPVIH--GGFLSSSQRP---------EEVAE 281 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~-----~~~~~lVl~P~~~L~~q~~~~l~~~~~--~~~i~~~~~~---------~~~~~ 281 (815)
++++.+|||||||++|++|++. ...++++++|+++|+.|+++.+...+. ...+++.... .....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 5899999999999999999984 357899999999999999999887432 2222221110 01111
Q ss_pred HHHHHhc-----CCceEEEeChhhhhchhhhhh---hhhcC--cccEEEEeccccccccccCchHHHHHHHHHHHHHhcc
Q 036378 282 TIRLIQV-----GAIKVLFVSPERFLNADFLSI---FTATS--LISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLN 351 (815)
Q Consensus 282 ~~~~l~~-----g~~~Ili~TPe~L~~~~~~~~---~~~~~--~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~ 351 (815)
....... -..+|+++||+++........ ...+. ..++|||||||++.+++.++ +..++.. +. ..
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~---l~~~l~~-l~--~~ 154 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL---ILAVLEV-LK--DN 154 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH---HHHHHHH-HH--Hc
Confidence 1111111 135799999999877554411 01011 34899999999999864333 3333222 22 24
Q ss_pred cceeEeeecccChhHHHHHHHHhcCC-ccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhh-ccccceEEEe
Q 036378 352 VECILAMTATATTTTLRDVMSALEIP-LSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS-SKHYYILQIS 429 (815)
Q Consensus 352 ~~~vl~lSAT~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~ivf~ 429 (815)
..|+++||||++....+ +....... ....+............+........ .. ...+..+... ..+.+++|||
T Consensus 155 ~~~~i~~SATlp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 155 DVPILLMSATLPKFLKE-YAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKV-GE---ISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred CCCEEEEecCchHHHHH-HHhcCCCcccccCCCCccccccccccceeeccccc-cC---HHHHHHHHHHhhCCCeEEEEE
Confidence 57899999999854433 32222211 11111111000000111111111111 01 1112222222 3467999999
Q ss_pred cchHHHHHHHHHHhhCCC--cEEEecCCCCHHHHHH----HHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCH
Q 036378 430 GKHFETDLISRYLCDNSI--SVKSYHSGIPAKDRSR----IQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESL 503 (815)
Q Consensus 430 ~s~~~~e~l~~~L~~~g~--~v~~~h~~~~~~~R~~----i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~ 503 (815)
++++.++.+++.|++.+. .+..+||+|++.+|.+ +++.|++|+.+|||||+++++|||++ +++||++..| +
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~ 306 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--I 306 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--H
Confidence 999999999999988776 5999999999999976 48899999999999999999999995 8899998766 7
Q ss_pred HHHHHHHcccCCCCCC----ceEEEEecccc
Q 036378 504 EEYVQEIGRAGRDGRL----SYCHLFLDDIT 530 (815)
Q Consensus 504 ~~y~Qr~GRaGR~g~~----g~~i~l~~~~d 530 (815)
++|+||+||+||.|+. |.+++|....+
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 8999999999998865 36677765443
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=300.99 Aligned_cols=340 Identities=18% Similarity=0.195 Sum_probs=244.9
Q ss_pred ccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCChhHHHHHHHHHH----Hc
Q 036378 166 TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKM-VLDKKSTMLVLPTGAGKSLCYQIPAM----IL 240 (815)
Q Consensus 166 ~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~-il~g~d~li~apTGsGKTl~~~lp~l----~~ 240 (815)
...++.++++..+-+.. .|++.+.|+|..++.+ ++.|+|.+++++|+|||||+.-++-+ ..
T Consensus 195 ~vdeLdipe~fk~~lk~--------------~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~ 260 (830)
T COG1202 195 PVDELDIPEKFKRMLKR--------------EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG 260 (830)
T ss_pred cccccCCcHHHHHHHHh--------------cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC
Confidence 44567777777766666 5999999999999998 67899999999999999998876643 33
Q ss_pred CCcEEEEcccHHHHHHHHHhcCCCce----eeeeccCCChHHHHH-HHHHHhcCCceEEEeChhhhhchhhhhhhhhcCc
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPPVIH----GGFLSSSQRPEEVAE-TIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~ 315 (815)
+++.|+++|+.+|++|-++.|+.-.. ...+..+++.-.... -...-..-++||+|+|.|-+-..+... ..+.+
T Consensus 261 g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgd 338 (830)
T COG1202 261 GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGD 338 (830)
T ss_pred CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--Ccccc
Confidence 88999999999999999999986211 122333332111110 011111236899999999886554443 33789
Q ss_pred ccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEE
Q 036378 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSV 395 (815)
Q Consensus 316 i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v 395 (815)
++.|||||+|.+-+...+.|- .-++. -++...+..|+|++|||.... ..+.+.|+..... -...+-++...+
T Consensus 339 iGtVVIDEiHtL~deERG~RL--dGLI~-RLr~l~~~AQ~i~LSATVgNp--~elA~~l~a~lV~---y~~RPVplErHl 410 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRL--DGLIG-RLRYLFPGAQFIYLSATVGNP--EELAKKLGAKLVL---YDERPVPLERHL 410 (830)
T ss_pred cceEEeeeeeeccchhcccch--hhHHH-HHHHhCCCCeEEEEEeecCCh--HHHHHHhCCeeEe---ecCCCCChhHee
Confidence 999999999999864333332 22323 356777889999999998765 3477777764332 222334444444
Q ss_pred EecCC-ccchhhhhhHHHHHHH--HhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 036378 396 SLSGN-NRQNERSAYVDEVFSF--HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK 472 (815)
Q Consensus 396 ~~~~~-~~~~~~~~~~~~l~~l--~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~ 472 (815)
....+ ..+......+.+-... ....-.++++||+++|+.|..+|.+|...|+++.+||+||+..+|..+...|.+++
T Consensus 411 vf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~ 490 (830)
T COG1202 411 VFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQE 490 (830)
T ss_pred eeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCC
Confidence 44432 2222222211111111 12223578999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccccccccCCccEEEE---eCCCC-CHHHHHHHHcccCCCCC--CceEEEEeccc
Q 036378 473 IRVVVATVAFGMGLDKRDVGAVIH---YSLPE-SLEEYVQEIGRAGRDGR--LSYCHLFLDDI 529 (815)
Q Consensus 473 ~~VLVaT~~~~~GID~p~v~~VI~---~d~P~-s~~~y~Qr~GRaGR~g~--~g~~i~l~~~~ 529 (815)
+.++|+|-+++-|+|+|.-.+|+. .+.-| |+.+|.|+.|||||-+- .|.+|+++.+.
T Consensus 491 l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 491 LAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999999999997665542 33333 89999999999999765 49999998764
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.9e-32 Score=314.83 Aligned_cols=303 Identities=16% Similarity=0.132 Sum_probs=208.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHH---HHc-CCcEEEEcccHHHHHHHHHhcCCCce--e---ee
Q 036378 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MIL-PGLTLVVCPLVALMIDQLRHLPPVIH--G---GF 269 (815)
Q Consensus 199 ~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~---l~~-~~~~lVl~P~~~L~~q~~~~l~~~~~--~---~~ 269 (815)
...||++|.+|++.++.+++.++++|||+|||+++...+ +.. .+++|||+||++|+.|+.+.+.++.. . ..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~ 191 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHK 191 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeE
Confidence 458999999999999999999999999999999765443 223 34899999999999999999987421 1 12
Q ss_pred eccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHh
Q 036378 270 LSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR 349 (815)
Q Consensus 270 i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~ 349 (815)
+.++... ....+|+|+||+++..... ..+.++++|||||||++.. +.+..+ +...
T Consensus 192 i~~g~~~-----------~~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~------~~~~~i----l~~~ 246 (501)
T PHA02558 192 IYSGTAK-----------DTDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTG------KSLTSI----ITKL 246 (501)
T ss_pred EecCccc-----------CCCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccc------hhHHHH----HHhh
Confidence 2222111 1246899999999875421 1256899999999999863 233333 3333
Q ss_pred cccceeEeeecccChhHHHH--HHHHhcCCccc-----eeeccccCCCeeEEEEecC-Ccc----------chh------
Q 036378 350 LNVECILAMTATATTTTLRD--VMSALEIPLSN-----LIQKAQLRDNLQLSVSLSG-NNR----------QNE------ 405 (815)
Q Consensus 350 ~~~~~vl~lSAT~~~~~~~~--i~~~l~~~~~~-----~~~~~~~~~~l~~~v~~~~-~~~----------~~~------ 405 (815)
.+..++++||||+....... +...++-.... .+...... ...+...... ... ...
T Consensus 247 ~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ 325 (501)
T PHA02558 247 DNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVT-DLKINSIFLRYPDEDRVKLKGEDYQEEIKYITS 325 (501)
T ss_pred hccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcC-CceEEEEeccCCHHHhhhhcccchHHHHHHHhc
Confidence 45568999999997543221 12222211000 00011111 1111110000 000 000
Q ss_pred hhhhHHHHHHHHhh--ccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEc-ccc
Q 036378 406 RSAYVDEVFSFHRS--SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT-VAF 482 (815)
Q Consensus 406 ~~~~~~~l~~l~~~--~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT-~~~ 482 (815)
.......+..+... ..+.+.+|||++.++++.+++.|.+.|+.+..+||+|+.++|..+++.|++|+..||||| +++
T Consensus 326 ~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l 405 (501)
T PHA02558 326 HTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVF 405 (501)
T ss_pred cHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEccee
Confidence 00000111112111 235678888899999999999999999999999999999999999999999999999998 899
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEec
Q 036378 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527 (815)
Q Consensus 483 ~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~ 527 (815)
++|+|+|++++||++.++.|...|+||+||++|.+..+...++++
T Consensus 406 ~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 406 STGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred ccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 999999999999999999999999999999999876654444443
No 65
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-34 Score=280.56 Aligned_cols=300 Identities=18% Similarity=0.237 Sum_probs=227.9
Q ss_pred ccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----
Q 036378 166 TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----- 240 (815)
Q Consensus 166 ~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~----- 240 (815)
-|.++-+.|++++++.+ .||+.|.+.|.++||...-|.|++++|..|-|||.+|.+..+..
T Consensus 43 gfrdfllkpellraivd--------------cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~ 108 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVD--------------CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD 108 (387)
T ss_pred chhhhhcCHHHHHHHHh--------------ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC
Confidence 57788899999999999 69999999999999999999999999999999999999998865
Q ss_pred -CCcEEEEcccHHHHHHHHHhcCC---C---ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhc
Q 036378 241 -PGLTLVVCPLVALMIDQLRHLPP---V---IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313 (815)
Q Consensus 241 -~~~~lVl~P~~~L~~q~~~~l~~---~---~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~ 313 (815)
...+||+|.||+|+-|+.++..+ + ++.+...+++......+. +++ -++|+|+||+|++.+.....+. +
T Consensus 109 g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~---lk~-~PhivVgTPGrilALvr~k~l~-l 183 (387)
T KOG0329|consen 109 GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEEL---LKN-CPHIVVGTPGRILALVRNRSLN-L 183 (387)
T ss_pred CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHH---HhC-CCeEEEcCcHHHHHHHHhccCc-h
Confidence 23489999999999998766554 3 344555555544433333 344 5899999999999887776666 8
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeecccc--CCCe
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQL--RDNL 391 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~--~~~l 391 (815)
.++..+|+||+|.|++|- +.|-+. ..+.+..+...|++.+|||.+.+...-..+++..|....+..... -..+
T Consensus 184 k~vkhFvlDEcdkmle~l-DMrRDv----QEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGL 258 (387)
T KOG0329|consen 184 KNVKHFVLDECDKMLEQL-DMRRDV----QEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGL 258 (387)
T ss_pred hhcceeehhhHHHHHHHH-HHHHHH----HHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhH
Confidence 899999999999998762 344444 445777888899999999999987765555555544333322111 1111
Q ss_pred eEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC
Q 036378 392 QLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471 (815)
Q Consensus 392 ~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g 471 (815)
+.......+. .+..++..++..+.-.+++||+.+... | + |
T Consensus 259 qQ~YvkLke~------eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~----------f--- 298 (387)
T KOG0329|consen 259 QQYYVKLKEN------EKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S----------F--- 298 (387)
T ss_pred HHHHHhhhhh------hhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----------h---
Confidence 1111111111 122345567777788899999877544 0 0 2
Q ss_pred CceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 472 ~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
..+ +|||++||||+|+..|+.|+|||+|.+..+|+||+|||||.|..|.++.|++.++
T Consensus 299 ~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 299 QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 223 8999999999999999999999999999999999999999999999999997653
No 66
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=4.9e-32 Score=302.15 Aligned_cols=365 Identities=19% Similarity=0.245 Sum_probs=272.9
Q ss_pred cCCCCCCHHHHHHHHHHHcC------CCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCCC---
Q 036378 197 YGYDSFRDGQLEAIKMVLDK------KSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPPV--- 264 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g------~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~~--- 264 (815)
+.| ++|..|++++..|... .+-|++|..|||||++.++.++. .+.++..++||--||.|.++.+.++
T Consensus 259 LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 259 LPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 565 5899999999998852 35699999999999999888764 4889999999999999999999884
Q ss_pred --ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHH
Q 036378 265 --IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR 342 (815)
Q Consensus 265 --~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~ 342 (815)
+....+.+.+.+..+...+..+.+|+++|||||..-+. +... +.+++++||||-|++. ...+
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~-F~~LgLVIiDEQHRFG----------V~QR 401 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-----DKVE-FHNLGLVIIDEQHRFG----------VHQR 401 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-----ccee-ecceeEEEEecccccc----------HHHH
Confidence 45688899999999999999999999999999976554 3334 7899999999999986 2232
Q ss_pred HHHHHHhcc-cceeEeeecccChhHHHHHHHHh-cCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhc
Q 036378 343 ASLLRARLN-VECILAMTATATTTTLRDVMSAL-EIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS 420 (815)
Q Consensus 343 ~~~~~~~~~-~~~vl~lSAT~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~ 420 (815)
.. ++.... .+.+|.|||||.|+++. ...+ .+....+-..+..|.++...+.......+ .++.+.. +..
T Consensus 402 ~~-L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~-----v~e~i~~--ei~ 471 (677)
T COG1200 402 LA-LREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPHERRPE-----VYERIRE--EIA 471 (677)
T ss_pred HH-HHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEeccccHHH-----HHHHHHH--HHH
Confidence 23 344444 67899999999999874 4444 34444455667788888887776544433 2222222 223
Q ss_pred cccceEEEecchH--------HHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCC
Q 036378 421 KHYYILQISGKHF--------ETDLISRYLCDN--SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490 (815)
Q Consensus 421 ~~~~~ivf~~s~~--------~~e~l~~~L~~~--g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~ 490 (815)
++.++.++|.-.+ .++.+++.|+.. ++.+..+||.|+++++++++++|++|+++|||||.+.+.|||+|+
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPn 551 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPN 551 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCC
Confidence 6677777775543 566777777753 567999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEecccc----HHHHHHhhhcCCCCHHHHHHHHH------HHhhcC
Q 036378 491 VGAVIHYSLPE-SLEEYVQEIGRAGRDGRLSYCHLFLDDIT----YFRLRSLMYSDGVDEYAINKFLC------QVFTNG 559 (815)
Q Consensus 491 v~~VI~~d~P~-s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d----~~~l~~~~~~~~~~~~~i~~~l~------~~~~~~ 559 (815)
..++|..|.-+ .+.+..|-.||+||++..++|++++.+.. ...++-+. ...|.+.|-+.=. ++|+..
T Consensus 552 ATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~--~t~DGF~IAE~DLklRGpGe~lG~r 629 (677)
T COG1200 552 ATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMR--ETTDGFVIAEEDLKLRGPGELLGTR 629 (677)
T ss_pred CeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHH--hcCCcceehhhhHhccCCccccCCc
Confidence 99999888766 89999999999999999999999998765 23333332 2233333332212 222222
Q ss_pred CCCCCCeeecchhHHHHHhCCCHHHHHHHHHHHH
Q 036378 560 MNSHGKLCSLVKESASRKFDIKEEVMLTLLTCLE 593 (815)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le 593 (815)
.+ | ..+|-..++...+++=+.+-+.+...+.
T Consensus 630 QS--G-~~~f~~Adl~~D~~ile~ar~~a~~~~~ 660 (677)
T COG1200 630 QS--G-LPEFRVADLVRDYDILEEARKDAAKLLS 660 (677)
T ss_pred cc--C-CcceEEeeHHhhHHHHHHHHHHHHHHHh
Confidence 22 2 3456566677777766666566665555
No 67
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=4.1e-32 Score=320.50 Aligned_cols=328 Identities=17% Similarity=0.140 Sum_probs=236.2
Q ss_pred CCCHHHHHHHHHHHcC---CCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHHHHHHHHHhcCC--Cceeeeecc
Q 036378 201 SFRDGQLEAIKMVLDK---KSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVALMIDQLRHLPP--VIHGGFLSS 272 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g---~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~L~~q~~~~l~~--~~~~~~i~~ 272 (815)
.+++.|+++++.+.++ +++++.|+||||||.+|+.++. ..++++||++|+++|+.|+++.+.+ +.....+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999984 7899999999999999987763 4578999999999999999999987 355677888
Q ss_pred CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhccc
Q 036378 273 SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNV 352 (815)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~ 352 (815)
+++..+....+..+..|.++|+|+||+++... +.++++|||||+|+.+-|.++ .|.|........+....+
T Consensus 224 ~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p--------~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~ra~~~~ 294 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGEAKVVIGARSALFLP--------FKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVVRAKLEN 294 (679)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEeccHHhccc--------ccCCCEEEEECCCccccccCc-CCCCcHHHHHHHHhhccC
Confidence 88888888888999999999999999887522 678999999999998866544 555533222445566677
Q ss_pred ceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCe-eEEEEecCCccch-hhhhhHH-HHHHHHhhc-cccceEEE
Q 036378 353 ECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNL-QLSVSLSGNNRQN-ERSAYVD-EVFSFHRSS-KHYYILQI 428 (815)
Q Consensus 353 ~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~v~~~~~~~~~-~~~~~~~-~l~~l~~~~-~~~~~ivf 428 (815)
.+++++|||++.+....+...- .. ............+ ...+......... ....... .+..+.+.+ .+.++++|
T Consensus 295 ~~~il~SATps~~s~~~~~~g~-~~-~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~ 372 (679)
T PRK05580 295 IPVVLGSATPSLESLANAQQGR-YR-LLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLF 372 (679)
T ss_pred CCEEEEcCCCCHHHHHHHhccc-ee-EEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 8999999999988876654211 00 0001111111111 1111111110000 0000111 111222222 34467776
Q ss_pred ecch------------------------------------------------------------HHHHHHHHHHhhC--C
Q 036378 429 SGKH------------------------------------------------------------FETDLISRYLCDN--S 446 (815)
Q Consensus 429 ~~s~------------------------------------------------------------~~~e~l~~~L~~~--g 446 (815)
+|++ ..++.+++.|.+. +
T Consensus 373 ~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~ 452 (679)
T PRK05580 373 LNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPE 452 (679)
T ss_pred EcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCC
Confidence 5542 3678899999886 7
Q ss_pred CcEEEecCCCCH--HHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE--eCCCCC----------HHHHHHHHcc
Q 036378 447 ISVKSYHSGIPA--KDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH--YSLPES----------LEEYVQEIGR 512 (815)
Q Consensus 447 ~~v~~~h~~~~~--~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~--~d~P~s----------~~~y~Qr~GR 512 (815)
.++..+|+++.. +++++++++|.+|+.+|||+|+++++|+|+|+|++|+. +|.+.+ ...|+|++||
T Consensus 453 ~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GR 532 (679)
T PRK05580 453 ARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGR 532 (679)
T ss_pred CcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhh
Confidence 899999999974 67899999999999999999999999999999999854 454443 3678999999
Q ss_pred cCCCCCCceEEEEeccccHHHHHHhhh
Q 036378 513 AGRDGRLSYCHLFLDDITYFRLRSLMY 539 (815)
Q Consensus 513 aGR~g~~g~~i~l~~~~d~~~l~~~~~ 539 (815)
+||.+..|.+++.....+...++.+..
T Consensus 533 agR~~~~g~viiqT~~p~~~~~~~~~~ 559 (679)
T PRK05580 533 AGRAEKPGEVLIQTYHPEHPVIQALLA 559 (679)
T ss_pred ccCCCCCCEEEEEeCCCCCHHHHHHHh
Confidence 999999999998776555555555543
No 68
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-32 Score=313.58 Aligned_cols=319 Identities=19% Similarity=0.139 Sum_probs=220.5
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+..++.+|. .|+|+|..+++.++.|+ |+.|.||+|||++|.+|++.. +..++||+||++||.|.++.+..
T Consensus 93 rEa~~R~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 93 REASGRVLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred HHHHHHHhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 4556666785 57799999999999999 999999999999999999855 78899999999999999888876
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh-------------------------hcCcc
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT-------------------------ATSLI 316 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~-------------------------~~~~i 316 (815)
++..+.+.+++...+ +.... .++|+|+|...|.-....+.+. ....+
T Consensus 170 ~lGlsv~~i~gg~~~~~-----r~~~y-~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~ 243 (656)
T PRK12898 170 ALGLTVGCVVEDQSPDE-----RRAAY-GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGL 243 (656)
T ss_pred hcCCEEEEEeCCCCHHH-----HHHHc-CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccc
Confidence 355666666655432 22233 4899999999873221111111 13468
Q ss_pred cEEEEeccccccc------------cc-cCchHHHHHH------------------------------------------
Q 036378 317 SLVVVDEAHCVSE------------WS-HNFRPSYMRL------------------------------------------ 341 (815)
Q Consensus 317 ~~lViDEaH~i~~------------~g-~~fr~~~~~i------------------------------------------ 341 (815)
.+.||||+|.++= -+ .+....|...
T Consensus 244 ~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~ 323 (656)
T PRK12898 244 HFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPA 323 (656)
T ss_pred ceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhh
Confidence 8999999998741 00 0000001100
Q ss_pred ----------HHHHHHHhc-------------------------------------------------------------
Q 036378 342 ----------RASLLRARL------------------------------------------------------------- 350 (815)
Q Consensus 342 ----------~~~~~~~~~------------------------------------------------------------- 350 (815)
+...++...
T Consensus 324 ~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~ 403 (656)
T PRK12898 324 WRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQR 403 (656)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHH
Confidence 000000000
Q ss_pred ---ccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCe----eEEEEecCCccchhhhhhHHHHHHHHhhc--c
Q 036378 351 ---NVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNL----QLSVSLSGNNRQNERSAYVDEVFSFHRSS--K 421 (815)
Q Consensus 351 ---~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l----~~~v~~~~~~~~~~~~~~~~~l~~l~~~~--~ 421 (815)
--..+.+||||+... ...+.+.+++.... -+..+++. ...+. ... ..+...+..++... .
T Consensus 404 ~Fr~Y~kl~GmTGTa~~~-~~El~~~y~l~vv~---IPt~kp~~r~~~~~~v~-~t~------~~K~~aL~~~i~~~~~~ 472 (656)
T PRK12898 404 FFRRYLRLAGMTGTAREV-AGELWSVYGLPVVR---IPTNRPSQRRHLPDEVF-LTA------AAKWAAVAARVRELHAQ 472 (656)
T ss_pred HHHhhHHHhcccCcChHH-HHHHHHHHCCCeEE---eCCCCCccceecCCEEE-eCH------HHHHHHHHHHHHHHHhc
Confidence 003457788888754 45666666665322 22222222 11111 111 11222333333322 3
Q ss_pred ccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccC---Ccc-----E
Q 036378 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR---DVG-----A 493 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p---~v~-----~ 493 (815)
+.+++|||++++.++.+++.|...|+.+..+||++...+ ..+..|..+...|+||||+++||+|++ +|. +
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLh 550 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLH 550 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCE
Confidence 578999999999999999999999999999999976554 444555556667999999999999999 777 9
Q ss_pred EEEeCCCCCHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 494 VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 494 VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
||++++|.+...|.||+||+||.|.+|.+++|++.+|
T Consensus 551 VI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 551 VILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9999999999999999999999999999999999876
No 69
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.4e-32 Score=313.95 Aligned_cols=323 Identities=18% Similarity=0.148 Sum_probs=222.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+..++.+|. .|+++|..++..++.|+ |+.|.||+|||++|.+|++. .+..++|++||..||.|.++.+..
T Consensus 68 rea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 68 REAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred HHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 4566677887 79999999999888876 99999999999999999974 488999999999999999988876
Q ss_pred --CceeeeeccCCC-hHHHHHHHHHHhcCCceEEEeChhhhh-chhhhhh-----hhhcCcccEEEEeccccccc-c---
Q 036378 264 --VIHGGFLSSSQR-PEEVAETIRLIQVGAIKVLFVSPERFL-NADFLSI-----FTATSLISLVVVDEAHCVSE-W--- 330 (815)
Q Consensus 264 --~~~~~~i~~~~~-~~~~~~~~~~l~~g~~~Ili~TPe~L~-~~~~~~~-----~~~~~~i~~lViDEaH~i~~-~--- 330 (815)
++..+.+.+++. ..+... .. .++|+|+||++|. +.+..+. ...+..+.++||||||.|+= -
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~~-----~y-~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~t 218 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKKA-----IY-EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQT 218 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHHH-----hc-CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCC
Confidence 355666666666 433332 12 4899999999993 2211111 11257899999999999852 0
Q ss_pred -----c--c--------------------Cc-----------------------------hHHH----HHHHHHHHHHh-
Q 036378 331 -----S--H--------------------NF-----------------------------RPSY----MRLRASLLRAR- 349 (815)
Q Consensus 331 -----g--~--------------------~f-----------------------------r~~~----~~i~~~~~~~~- 349 (815)
| . +| .+.. ..+.. .++..
T Consensus 219 pliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~-Al~A~~ 297 (790)
T PRK09200 219 PLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIIL-ALRAHV 297 (790)
T ss_pred ceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHH-HHHHHH
Confidence 0 0 00 0000 11100 01100
Q ss_pred c---------------------------------------------------------------ccceeEeeecccChhH
Q 036378 350 L---------------------------------------------------------------NVECILAMTATATTTT 366 (815)
Q Consensus 350 ~---------------------------------------------------------------~~~~vl~lSAT~~~~~ 366 (815)
. --..+.+||+|+..+.
T Consensus 298 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~ 377 (790)
T PRK09200 298 LFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEE 377 (790)
T ss_pred HhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHH
Confidence 0 0023455555553322
Q ss_pred HHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhh--ccccceEEEecchHHHHHHHHHHhh
Q 036378 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS--SKHYYILQISGKHFETDLISRYLCD 444 (815)
Q Consensus 367 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~ivf~~s~~~~e~l~~~L~~ 444 (815)
..+.+..++. ++.-+..++...... .+........+...+...+.. ..+.+++|||+|++.++.+++.|.+
T Consensus 378 -~e~~~~Y~l~---v~~IPt~kp~~r~d~---~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~ 450 (790)
T PRK09200 378 -KEFFEVYNME---VVQIPTNRPIIRIDY---PDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE 450 (790)
T ss_pred -HHHHHHhCCc---EEECCCCCCcccccC---CCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 2333333332 222222232222110 000001111223333333322 3578999999999999999999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccccccccc---CCcc-----EEEEeCCCCCHHHHHHHHcccCCC
Q 036378 445 NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDK---RDVG-----AVIHYSLPESLEEYVQEIGRAGRD 516 (815)
Q Consensus 445 ~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~---p~v~-----~VI~~d~P~s~~~y~Qr~GRaGR~ 516 (815)
.|+.+..+||++...++..+..++..| +|+|||+++|||+|+ ++|. +||++++|.+.+.|.||+||+||.
T Consensus 451 ~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~ 528 (790)
T PRK09200 451 AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQ 528 (790)
T ss_pred CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCC
Confidence 999999999999999988888887766 799999999999999 6999 999999999999999999999999
Q ss_pred CCCceEEEEeccccH
Q 036378 517 GRLSYCHLFLDDITY 531 (815)
Q Consensus 517 g~~g~~i~l~~~~d~ 531 (815)
|.+|.++.|++.+|.
T Consensus 529 G~~G~s~~~is~eD~ 543 (790)
T PRK09200 529 GDPGSSQFFISLEDD 543 (790)
T ss_pred CCCeeEEEEEcchHH
Confidence 999999999998764
No 70
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.1e-32 Score=288.89 Aligned_cols=321 Identities=23% Similarity=0.267 Sum_probs=236.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----CCcEEEEcccHHHHHHHHHhcCC--Cce---e
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPP--VIH---G 267 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~----~~~~lVl~P~~~L~~q~~~~l~~--~~~---~ 267 (815)
.+.-++|.+|..+....+.+ ++|+++|||-|||+++.+-+... ++.+|+++||+-|+.|+...+.+ +++ .
T Consensus 11 p~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred cccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 35568999999999888877 99999999999999887766532 66899999999999999999988 332 3
Q ss_pred eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHH
Q 036378 268 GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR 347 (815)
Q Consensus 268 ~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~ 347 (815)
..+.+...+.++...+. .-+|+|+||..+.+.+....+. +.++.++|+||||+-.- + -.|..+....++
T Consensus 90 ~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid-~~dv~~lifDEAHRAvG---n--yAYv~Va~~y~~ 158 (542)
T COG1111 90 AALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRID-LDDVSLLIFDEAHRAVG---N--YAYVFVAKEYLR 158 (542)
T ss_pred eeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccC-hHHceEEEechhhhccC---c--chHHHHHHHHHH
Confidence 46777777777777766 4699999999999988888887 88999999999999752 2 256666444444
Q ss_pred HhcccceeEeeecccChhH--HHHHHHHhcCCccce--------------------------------------------
Q 036378 348 ARLNVECILAMTATATTTT--LRDVMSALEIPLSNL-------------------------------------------- 381 (815)
Q Consensus 348 ~~~~~~~vl~lSAT~~~~~--~~~i~~~l~~~~~~~-------------------------------------------- 381 (815)
....+.+++|||||.... ...+++.|++....+
T Consensus 159 -~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk 237 (542)
T COG1111 159 -SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLK 237 (542)
T ss_pred -hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHH
Confidence 344567999999997643 334555555432110
Q ss_pred -------eeccc--cCCC------eeEEEEecCCccchhh----------------------------------------
Q 036378 382 -------IQKAQ--LRDN------LQLSVSLSGNNRQNER---------------------------------------- 406 (815)
Q Consensus 382 -------~~~~~--~~~~------l~~~v~~~~~~~~~~~---------------------------------------- 406 (815)
+.... .... ..+......+......
T Consensus 238 ~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~ 317 (542)
T COG1111 238 PLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGG 317 (542)
T ss_pred HHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccc
Confidence 00000 0000 0000000000000000
Q ss_pred -----------------------------hhhHHHHH----HHHhhccccceEEEecchHHHHHHHHHHhhCCCcEE-Ee
Q 036378 407 -----------------------------SAYVDEVF----SFHRSSKHYYILQISGKHFETDLISRYLCDNSISVK-SY 452 (815)
Q Consensus 407 -----------------------------~~~~~~l~----~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~-~~ 452 (815)
..++..+. ..++.....+++||++.|.+++.+.++|.+.|+.+. .+
T Consensus 318 sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rF 397 (542)
T COG1111 318 SKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRF 397 (542)
T ss_pred hHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEE
Confidence 00001111 112223456899999999999999999999998884 33
Q ss_pred c--------CCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEE
Q 036378 453 H--------SGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524 (815)
Q Consensus 453 h--------~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~ 524 (815)
- .||+++++.+++++|++|+..|||||++.+.|+|+|+|+.||.|+.-.|..-++||.||+||. +.|.+++
T Consensus 398 iGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~v 476 (542)
T COG1111 398 IGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVV 476 (542)
T ss_pred eeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEE
Confidence 2 589999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred EeccccH
Q 036378 525 FLDDITY 531 (815)
Q Consensus 525 l~~~~d~ 531 (815)
|+...+.
T Consensus 477 Lvt~gtr 483 (542)
T COG1111 477 LVTEGTR 483 (542)
T ss_pred EEecCch
Confidence 9988743
No 71
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.5e-31 Score=307.02 Aligned_cols=327 Identities=15% Similarity=0.142 Sum_probs=215.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+..++.+|. +|+|.+++..+..++..++.|+||+|||++|.+|++.. +..++||+|+++|+.|+.+.+..
T Consensus 60 rEa~~R~lgl---rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 60 READKRVLGM---FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred HHHHHhhcCC---CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 3455666774 66666677666666668999999999999999998743 67799999999999999988855
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhh------hhcCcccEEEEecccccccc-----
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF------TATSLISLVVVDEAHCVSEW----- 330 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~------~~~~~i~~lViDEaH~i~~~----- 330 (815)
++....+..+....+.....+.... .++|+|+||++|....+...+ ..+.++.++||||||+|+--
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y-~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartp 215 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIY-NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTP 215 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhC-CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCC
Confidence 2333333332111122222222223 489999999999432222211 11568999999999998430
Q ss_pred ----cc--CchHHHHHHHHHHHHHhcc-----------------------------------------------------
Q 036378 331 ----SH--NFRPSYMRLRASLLRARLN----------------------------------------------------- 351 (815)
Q Consensus 331 ----g~--~fr~~~~~i~~~~~~~~~~----------------------------------------------------- 351 (815)
|. .-..-|... ..+.+....
T Consensus 216 liisg~~~~~~~~y~~~-~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~ 294 (762)
T TIGR03714 216 LVISGAPRVQSNLYHIA-DTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYL 294 (762)
T ss_pred eeeeCCCccchHHHHHH-HHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHH
Confidence 00 000011111 011110000
Q ss_pred ----------------------------------------------------------------cceeEeeecccChhHH
Q 036378 352 ----------------------------------------------------------------VECILAMTATATTTTL 367 (815)
Q Consensus 352 ----------------------------------------------------------------~~~vl~lSAT~~~~~~ 367 (815)
-..+.+||+|+..+ .
T Consensus 295 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~-~ 373 (762)
T TIGR03714 295 FKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVA-E 373 (762)
T ss_pred HhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhH-H
Confidence 02445566665432 2
Q ss_pred HHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhh--ccccceEEEecchHHHHHHHHHHhhC
Q 036378 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS--SKHYYILQISGKHFETDLISRYLCDN 445 (815)
Q Consensus 368 ~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~ivf~~s~~~~e~l~~~L~~~ 445 (815)
..+.+..++. ++.-+..++..... ..+........+...+...+.. ..+.+++|||++++.++.++..|...
T Consensus 374 ~Ef~~iY~l~---v~~IPt~kp~~r~d---~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~ 447 (762)
T TIGR03714 374 KEFIETYSLS---VVKIPTNKPIIRID---YPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE 447 (762)
T ss_pred HHHHHHhCCC---EEEcCCCCCeeeee---CCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC
Confidence 2333333332 22222222222221 1111111112223333333322 45789999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccC---------CccEEEEeCCCCCHHHHHHHHcccCCC
Q 036378 446 SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR---------DVGAVIHYSLPESLEEYVQEIGRAGRD 516 (815)
Q Consensus 446 g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p---------~v~~VI~~d~P~s~~~y~Qr~GRaGR~ 516 (815)
|+++..+||++...++..+..++..| .|+||||++|||+|++ ++.+|+++++|....+ .||+||+||.
T Consensus 448 gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRq 524 (762)
T TIGR03714 448 GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQ 524 (762)
T ss_pred CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCC
Confidence 99999999999999988888877777 6999999999999999 9999999999998877 9999999999
Q ss_pred CCCceEEEEeccccH
Q 036378 517 GRLSYCHLFLDDITY 531 (815)
Q Consensus 517 g~~g~~i~l~~~~d~ 531 (815)
|.+|.++.|++.+|.
T Consensus 525 G~~G~s~~~is~eD~ 539 (762)
T TIGR03714 525 GDPGSSQFFVSLEDD 539 (762)
T ss_pred CCceeEEEEEccchh
Confidence 999999999998764
No 72
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.7e-31 Score=327.97 Aligned_cols=291 Identities=16% Similarity=0.190 Sum_probs=207.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH----cCCcEEEEcccHHHHHHHHHhcCCC
Q 036378 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVALMIDQLRHLPPV 264 (815)
Q Consensus 189 l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~----~~~~~lVl~P~~~L~~q~~~~l~~~ 264 (815)
+.+.+....|+ .|+++|+.+++.++.|+|++++||||+|||+ |.+|+.. .+.++|||+||++|+.|+++.+..+
T Consensus 67 f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l 144 (1171)
T TIGR01054 67 FEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSL 144 (1171)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHH
Confidence 44455555676 6999999999999999999999999999997 5555532 3688999999999999999998873
Q ss_pred ce-----e---eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccc-----
Q 036378 265 IH-----G---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWS----- 331 (815)
Q Consensus 265 ~~-----~---~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g----- 331 (815)
.. . ..++++++..+....++.+..|.++|||+||++|...... +. . +++++||||||+|++|+
T Consensus 145 ~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~-~-~~~~iVvDEaD~~L~~~k~vd~ 220 (1171)
T TIGR01054 145 AEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LG-P-KFDFIFVDDVDALLKASKNVDK 220 (1171)
T ss_pred HHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hc-C-CCCEEEEeChHhhhhccccHHH
Confidence 32 1 2356777777777777888888899999999999765322 22 1 79999999999999876
Q ss_pred ----cCchHHH-HHHHH------------------HHHHHhcccce--eEeeecccChh-HHHHHHHH-hcCCccceeec
Q 036378 332 ----HNFRPSY-MRLRA------------------SLLRARLNVEC--ILAMTATATTT-TLRDVMSA-LEIPLSNLIQK 384 (815)
Q Consensus 332 ----~~fr~~~-~~i~~------------------~~~~~~~~~~~--vl~lSAT~~~~-~~~~i~~~-l~~~~~~~~~~ 384 (815)
-+|.++. ..++. ..++......| ++++|||..+. +...+... +++ .+-..
T Consensus 221 il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~---~v~~~ 297 (1171)
T TIGR01054 221 LLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGF---EVGGG 297 (1171)
T ss_pred HHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccce---EecCc
Confidence 3576642 22211 11222223333 56789995443 33222211 111 11111
Q ss_pred cccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecch---HHHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 036378 385 AQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKH---FETDLISRYLCDNSISVKSYHSGIPAKDR 461 (815)
Q Consensus 385 ~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~---~~~e~l~~~L~~~g~~v~~~h~~~~~~~R 461 (815)
.....++.......... ...+..++..+ +.+++|||+++ +.++.+++.|.+.|+.+..+||+|+
T Consensus 298 ~~~~r~I~~~~~~~~~~--------~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~---- 364 (1171)
T TIGR01054 298 SDTLRNVVDVYVEDEDL--------KETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP---- 364 (1171)
T ss_pred cccccceEEEEEecccH--------HHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----
Confidence 12223333333222110 11223444433 36789999999 9999999999999999999999997
Q ss_pred HHHHHHHhcCCceEEEE----ccccccccccCC-ccEEEEeCCCC
Q 036378 462 SRIQELFCSNKIRVVVA----TVAFGMGLDKRD-VGAVIHYSLPE 501 (815)
Q Consensus 462 ~~i~~~F~~g~~~VLVa----T~~~~~GID~p~-v~~VI~~d~P~ 501 (815)
..++++|++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 365 ~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 36899999999999999 599999999999 89999999997
No 73
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=9e-32 Score=320.78 Aligned_cols=327 Identities=22% Similarity=0.282 Sum_probs=239.2
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----CCcEEEEcccHHHHHHHHHhcCCCc------
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-----PGLTLVVCPLVALMIDQLRHLPPVI------ 265 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-----~~~~lVl~P~~~L~~q~~~~l~~~~------ 265 (815)
.|...|..+|.+|+..+.+|+|+|++.+||||||+||++|++.. ..++|+|.||+||++||.++|.+++
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 66 AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 58888999999999999999999999999999999999999854 4567999999999999999998732
Q ss_pred -eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhh---hhhhcCcccEEEEeccccccc-cccCchHHHHH
Q 036378 266 -HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS---IFTATSLISLVVVDEAHCVSE-WSHNFRPSYMR 340 (815)
Q Consensus 266 -~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~---~~~~~~~i~~lViDEaH~i~~-~g~~fr~~~~~ 340 (815)
.....++.....+.. .+..+.++||+++|..|...+... ....+.++++|||||+|..-- .|.+..--+.+
T Consensus 146 v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRR 221 (851)
T COG1205 146 VTFGRYTGDTPPEERR----AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRR 221 (851)
T ss_pred ceeeeecCCCChHHHH----HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHH
Confidence 334445555544443 455668999999999997633322 222356899999999997631 22222222223
Q ss_pred HHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccc-hh--hhhhHHHHHHHH
Q 036378 341 LRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQ-NE--RSAYVDEVFSFH 417 (815)
Q Consensus 341 i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~-~~--~~~~~~~l~~l~ 417 (815)
+ ..+++......|+|+.|||..... +...+.++......+..+..+....+.+........ .. ..........+.
T Consensus 222 L-~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~ 299 (851)
T COG1205 222 L-LRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLA 299 (851)
T ss_pred H-HHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHH
Confidence 3 222333334679999999986653 334555554444424444444444443333331111 00 111222222222
Q ss_pred --hhccccceEEEecchHHHHHHH----HHHhhCC----CcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccc
Q 036378 418 --RSSKHYYILQISGKHFETDLIS----RYLCDNS----ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487 (815)
Q Consensus 418 --~~~~~~~~ivf~~s~~~~e~l~----~~L~~~g----~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID 487 (815)
...++.++++|+.+++.++.++ ..+...+ ..+..|+|+|..++|.++...|+.|+..++++|+++.-|||
T Consensus 300 ~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelgid 379 (851)
T COG1205 300 ALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGID 379 (851)
T ss_pred HHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhcee
Confidence 2346789999999999999997 4555555 67899999999999999999999999999999999999999
Q ss_pred cCCccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 488 KRDVGAVIHYSLPE-SLEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 488 ~p~v~~VI~~d~P~-s~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
+.++..||++..|. +..++.|++|||||.++.+..++++..+
T Consensus 380 iG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 380 IGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred ehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 99999999999999 9999999999999999888888887643
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.98 E-value=1.9e-30 Score=315.49 Aligned_cols=320 Identities=20% Similarity=0.242 Sum_probs=225.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----CCcEEEEcccHHHHHHHHHhcCCCc-----eee
Q 036378 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVI-----HGG 268 (815)
Q Consensus 198 g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~----~~~~lVl~P~~~L~~q~~~~l~~~~-----~~~ 268 (815)
+.-++|++|.+++..++.+ ++|+++|||+|||+++++++... ++++|||+|+++|+.|+.+.+.+.+ ...
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 4457899999999998887 99999999999999998887643 7899999999999999999988732 334
Q ss_pred eeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHH
Q 036378 269 FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRA 348 (815)
Q Consensus 269 ~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~ 348 (815)
.+.+.....+....+. +.+|+|+||+.+.+.+....+. +.++++|||||||++.. ++ .|..+. ..+..
T Consensus 91 ~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~-~~~~~liVvDEaH~~~~---~~--~~~~i~-~~~~~ 158 (773)
T PRK13766 91 VFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRIS-LEDVSLLIFDEAHRAVG---NY--AYVYIA-ERYHE 158 (773)
T ss_pred EEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCC-hhhCcEEEEECCccccc---cc--cHHHHH-HHHHh
Confidence 4555555544333222 4699999999998766555554 67899999999999863 22 233342 23334
Q ss_pred hcccceeEeeecccChh--HHHHHHHHhcCCccceeec-------cccCCCeeEEEE-----------------------
Q 036378 349 RLNVECILAMTATATTT--TLRDVMSALEIPLSNLIQK-------AQLRDNLQLSVS----------------------- 396 (815)
Q Consensus 349 ~~~~~~vl~lSAT~~~~--~~~~i~~~l~~~~~~~~~~-------~~~~~~l~~~v~----------------------- 396 (815)
....+.+++|||||... ....++..+.+....+... ...+..+.....
T Consensus 159 ~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~ 238 (773)
T PRK13766 159 DAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKK 238 (773)
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44556799999998532 2223333332211100000 000000000000
Q ss_pred ---------ec---------------------CCc---------------------------------------------
Q 036378 397 ---------LS---------------------GNN--------------------------------------------- 401 (815)
Q Consensus 397 ---------~~---------------------~~~--------------------------------------------- 401 (815)
.. ...
T Consensus 239 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~ 318 (773)
T PRK13766 239 LKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSG 318 (773)
T ss_pred HHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccC
Confidence 00 000
Q ss_pred -cc---------------------hhhhhhHHHHHHHHh----hccccceEEEecchHHHHHHHHHHhhCCCcEEEecCC
Q 036378 402 -RQ---------------------NERSAYVDEVFSFHR----SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSG 455 (815)
Q Consensus 402 -~~---------------------~~~~~~~~~l~~l~~----~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~ 455 (815)
.+ .....++..+..++. .....+++|||+++..++.|++.|...|+.+..+||.
T Consensus 319 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~ 398 (773)
T PRK13766 319 GSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQ 398 (773)
T ss_pred CcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcc
Confidence 00 000001111222221 1456789999999999999999999999999999986
Q ss_pred --------CCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEec
Q 036378 456 --------IPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527 (815)
Q Consensus 456 --------~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~ 527 (815)
|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.| +|.+++++.
T Consensus 399 ~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~ 477 (773)
T PRK13766 399 ASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIA 477 (773)
T ss_pred ccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999986 488888887
Q ss_pred cccH
Q 036378 528 DITY 531 (815)
Q Consensus 528 ~~d~ 531 (815)
....
T Consensus 478 ~~t~ 481 (773)
T PRK13766 478 KGTR 481 (773)
T ss_pred CCCh
Confidence 6544
No 75
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=4.9e-31 Score=300.83 Aligned_cols=306 Identities=16% Similarity=0.162 Sum_probs=219.4
Q ss_pred EEEcCCChhHHHHHHHHH---HHcCCcEEEEcccHHHHHHHHHhcCC--CceeeeeccCCChHHHHHHHHHHhcCCceEE
Q 036378 220 MLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLVALMIDQLRHLPP--VIHGGFLSSSQRPEEVAETIRLIQVGAIKVL 294 (815)
Q Consensus 220 li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~q~~~~l~~--~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Il 294 (815)
|+.|+||||||++|+..+ +..++++||++|+++|+.|+++.|++ +.....+++.++..+....+..+..|+++|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 578999999999997554 35578999999999999999999987 3456788899999999899999999999999
Q ss_pred EeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHh
Q 036378 295 FVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374 (815)
Q Consensus 295 i~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l 374 (815)
|+|+..+... +.++++|||||+|+.+.|++++ |.|........+....+.+++++||||+.+....+...-
T Consensus 81 VGTrsalf~p--------~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~ 151 (505)
T TIGR00595 81 IGTRSALFLP--------FKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKA 151 (505)
T ss_pred ECChHHHcCc--------ccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCC
Confidence 9999987532 6789999999999999887665 666543234556666788999999999988776553311
Q ss_pred cCCccceeeccc-cCCCeeEEEEecCCccchhhhhhHHH-HHHHHhhc-cccceEEEecchH------------------
Q 036378 375 EIPLSNLIQKAQ-LRDNLQLSVSLSGNNRQNERSAYVDE-VFSFHRSS-KHYYILQISGKHF------------------ 433 (815)
Q Consensus 375 ~~~~~~~~~~~~-~~~~l~~~v~~~~~~~~~~~~~~~~~-l~~l~~~~-~~~~~ivf~~s~~------------------ 433 (815)
. ......... ........+......... ...... +..+.+.+ .+.++++|+|++.
T Consensus 152 -~-~~~~l~~r~~~~~~p~v~vid~~~~~~~--~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~ 227 (505)
T TIGR00595 152 -Y-RLLVLTRRVSGRKPPEVKLIDMRKEPRQ--SFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPN 227 (505)
T ss_pred -e-EEeechhhhcCCCCCeEEEEeccccccc--CCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCC
Confidence 0 000000000 111112222211111100 011111 12222333 4567888866652
Q ss_pred ------------------------------------------HHHHHHHHHhhC--CCcEEEecCCCCHHHH--HHHHHH
Q 036378 434 ------------------------------------------ETDLISRYLCDN--SISVKSYHSGIPAKDR--SRIQEL 467 (815)
Q Consensus 434 ------------------------------------------~~e~l~~~L~~~--g~~v~~~h~~~~~~~R--~~i~~~ 467 (815)
.++.+++.|.+. +.++..+|++++...+ ++++++
T Consensus 228 C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~ 307 (505)
T TIGR00595 228 CDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQ 307 (505)
T ss_pred CCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHH
Confidence 268889999886 7889999999987766 899999
Q ss_pred HhcCCceEEEEccccccccccCCccEEE--EeCC----CC------CHHHHHHHHcccCCCCCCceEEEEeccccHHHHH
Q 036378 468 FCSNKIRVVVATVAFGMGLDKRDVGAVI--HYSL----PE------SLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLR 535 (815)
Q Consensus 468 F~~g~~~VLVaT~~~~~GID~p~v~~VI--~~d~----P~------s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~ 535 (815)
|.+|+.+|||+|+++++|+|+|+|++|+ ++|. |. ....|+|++|||||.++.|.+++.....+...++
T Consensus 308 f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~~ 387 (505)
T TIGR00595 308 FANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQ 387 (505)
T ss_pred HhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHHH
Confidence 9999999999999999999999999975 5554 32 3567899999999999999999765444444444
Q ss_pred Hhh
Q 036378 536 SLM 538 (815)
Q Consensus 536 ~~~ 538 (815)
.+.
T Consensus 388 ~~~ 390 (505)
T TIGR00595 388 AAL 390 (505)
T ss_pred HHH
Confidence 443
No 76
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.97 E-value=9.4e-31 Score=307.88 Aligned_cols=328 Identities=20% Similarity=0.243 Sum_probs=233.0
Q ss_pred cCCCCCCHHHHHHHHHHH-cCCCEEEEcCCChhHHHHHHHHHHHc----CCcEEEEcccHHHHHHHHHhcCC----Ccee
Q 036378 197 YGYDSFRDGQLEAIKMVL-DKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPP----VIHG 267 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il-~g~d~li~apTGsGKTl~~~lp~l~~----~~~~lVl~P~~~L~~q~~~~l~~----~~~~ 267 (815)
.|+..+.+.|+.++...+ .++|+|+++|||||||+++++.++.. ++++|+|+|+++|+.+.++++.+ +++.
T Consensus 27 ~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV 106 (766)
T COG1204 27 DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRV 106 (766)
T ss_pred CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEE
Confidence 477788888888887765 45899999999999999999998743 57999999999999999999993 5566
Q ss_pred eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHH
Q 036378 268 GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR 347 (815)
Q Consensus 268 ~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~ 347 (815)
....+...... +.+ .+++|+|+|||++......... ....+++|||||+|.+.+ .-|......+....+
T Consensus 107 ~~~TgD~~~~~-----~~l--~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d---~~RG~~lE~iv~r~~ 175 (766)
T COG1204 107 GISTGDYDLDD-----ERL--ARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGD---RTRGPVLESIVARMR 175 (766)
T ss_pred EEecCCcccch-----hhh--ccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCC---cccCceehhHHHHHH
Confidence 66655544322 111 2689999999999765444433 266899999999999975 435555554444455
Q ss_pred HhcccceeEeeecccChhHHHHHHHHhcCCcc-ceeeccccCCCeeE--EEEecCCccc-hhhhhhHHHHHHH-Hhhccc
Q 036378 348 ARLNVECILAMTATATTTTLRDVMSALEIPLS-NLIQKAQLRDNLQL--SVSLSGNNRQ-NERSAYVDEVFSF-HRSSKH 422 (815)
Q Consensus 348 ~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~--~v~~~~~~~~-~~~~~~~~~l~~l-~~~~~~ 422 (815)
......+++++|||.+.- .++..|++.... ..+........+.+ .+.......+ .........+... .....+
T Consensus 176 ~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~ 253 (766)
T COG1204 176 RLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEG 253 (766)
T ss_pred hhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcC
Confidence 555557999999998764 568899977644 12222222222222 2222221111 0011111111122 233456
Q ss_pred cceEEEecchHHHHHHHHHHhhC-------------------------------------CCcEEEecCCCCHHHHHHHH
Q 036378 423 YYILQISGKHFETDLISRYLCDN-------------------------------------SISVKSYHSGIPAKDRSRIQ 465 (815)
Q Consensus 423 ~~~ivf~~s~~~~e~l~~~L~~~-------------------------------------g~~v~~~h~~~~~~~R~~i~ 465 (815)
+++++||++|+.+...|+.|+.. -..+.++|+||+.++|..+.
T Consensus 254 ~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE 333 (766)
T COG1204 254 GQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVE 333 (766)
T ss_pred CeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHH
Confidence 79999999999999999998830 13578999999999999999
Q ss_pred HHHhcCCceEEEEccccccccccCCccEEE----EeC-----CCCCHHHHHHHHcccCCCCCC--ceEEEEe-ccccHHH
Q 036378 466 ELFCSNKIRVVVATVAFGMGLDKRDVGAVI----HYS-----LPESLEEYVQEIGRAGRDGRL--SYCHLFL-DDITYFR 533 (815)
Q Consensus 466 ~~F~~g~~~VLVaT~~~~~GID~p~v~~VI----~~d-----~P~s~~~y~Qr~GRaGR~g~~--g~~i~l~-~~~d~~~ 533 (815)
+.|+.|+++|||||..++.|+|.|.-++|| -|+ .+-+.-+|.|++|||||-|-. |.++++. +.++...
T Consensus 334 ~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~ 413 (766)
T COG1204 334 DAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEY 413 (766)
T ss_pred HHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhH
Confidence 999999999999999999999999766666 366 556889999999999998764 6777777 3344443
Q ss_pred HHHh
Q 036378 534 LRSL 537 (815)
Q Consensus 534 l~~~ 537 (815)
+...
T Consensus 414 ~~~~ 417 (766)
T COG1204 414 LAEL 417 (766)
T ss_pred HHHH
Confidence 3333
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=2.5e-30 Score=312.34 Aligned_cols=357 Identities=15% Similarity=0.158 Sum_probs=228.6
Q ss_pred HHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----C--CcEEEEcc----cHHHHHHHHHhcCCCceeeeeccCCC
Q 036378 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----P--GLTLVVCP----LVALMIDQLRHLPPVIHGGFLSSSQR 275 (815)
Q Consensus 206 Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~----~--~~~lVl~P----~~~L~~q~~~~l~~~~~~~~i~~~~~ 275 (815)
-.+++.++..++.++++|+||||||. ++|.+.. + +.+++..| +++|+.++.+++...+. ..+.....
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG-~~VGY~vr 155 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELG-GCVGYKVR 155 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc-ceeceeec
Confidence 34566666677788899999999999 7895533 1 34555667 56888888888875211 11111111
Q ss_pred hHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEecccc-ccccccCchHHHHHHHHHHHHHhcccce
Q 036378 276 PEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHC-VSEWSHNFRPSYMRLRASLLRARLNVEC 354 (815)
Q Consensus 276 ~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~-i~~~g~~fr~~~~~i~~~~~~~~~~~~~ 354 (815)
..+ .. ..+++|+|+||++|+..+..... +.++++|||||||+ +++. +|...+. ..++.. .+..+
T Consensus 156 f~~------~~-s~~t~I~v~TpG~LL~~l~~d~~--Ls~~~~IIIDEAHERsLn~--DfLLg~L---k~lL~~-rpdlK 220 (1294)
T PRK11131 156 FND------QV-SDNTMVKLMTDGILLAEIQQDRL--LMQYDTIIIDEAHERSLNI--DFILGYL---KELLPR-RPDLK 220 (1294)
T ss_pred Ccc------cc-CCCCCEEEEChHHHHHHHhcCCc--cccCcEEEecCcccccccc--chHHHHH---HHhhhc-CCCce
Confidence 111 11 23589999999999987654432 78999999999995 5543 6665443 223332 35679
Q ss_pred eEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHH---HhhccccceEEEecc
Q 036378 355 ILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF---HRSSKHYYILQISGK 431 (815)
Q Consensus 355 vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~~ivf~~s 431 (815)
+|+||||+..+ .+.+.+.......+.... .++.................++..+... +.....+.++||+++
T Consensus 221 vILmSATid~e---~fs~~F~~apvI~V~Gr~--~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg 295 (1294)
T PRK11131 221 VIITSATIDPE---RFSRHFNNAPIIEVSGRT--YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSG 295 (1294)
T ss_pred EEEeeCCCCHH---HHHHHcCCCCEEEEcCcc--ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCC
Confidence 99999999764 345555432211121111 1222222222111110111122222111 112345789999999
Q ss_pred hHHHHHHHHHHhhCCCc---EEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeC----------
Q 036378 432 HFETDLISRYLCDNSIS---VKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYS---------- 498 (815)
Q Consensus 432 ~~~~e~l~~~L~~~g~~---v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d---------- 498 (815)
+.+++.+++.|.+.++. +..+||+|++++|..+++. .|..+||||||++++|||+|+|++||+++
T Consensus 296 ~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~ 373 (1294)
T PRK11131 296 EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYR 373 (1294)
T ss_pred HHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccc
Confidence 99999999999988764 7789999999999999886 57899999999999999999999999986
Q ss_pred -----CC---CCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCeeecc
Q 036378 499 -----LP---ESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSLV 570 (815)
Q Consensus 499 -----~P---~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 570 (815)
+| .|.++|.||+|||||. .+|.||.||+++++..+..+... .+-...+...+.++.... .+.+..|.
T Consensus 374 ~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~~~~~~P-EIlR~~L~~viL~lk~lg---l~di~~F~ 448 (1294)
T PRK11131 374 TKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSRPEFTDP-EILRTNLASVILQMTALG---LGDIAAFP 448 (1294)
T ss_pred cCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhhhcccCC-ccccCCHHHHHHHHHHcC---CCCcceee
Confidence 33 4678999999999999 69999999999987665432211 223334555554443222 22233332
Q ss_pred hhHHHHHhC-CCHHHHHHHHHHHHhcCcccE
Q 036378 571 KESASRKFD-IKEEVMLTLLTCLELGEIQYL 600 (815)
Q Consensus 571 ~~~~~~~~~-~~~~~~~~~l~~le~~~~~~i 600 (815)
. ++ =+.+.+...+..|. .-|.|
T Consensus 449 f------ldpP~~~~i~~al~~L~--~LgAl 471 (1294)
T PRK11131 449 F------VEAPDKRNIQDGVRLLE--ELGAI 471 (1294)
T ss_pred C------CCCCCHHHHHHHHHHHH--HCCCC
Confidence 1 11 13455667777777 34444
No 78
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.97 E-value=5e-30 Score=294.30 Aligned_cols=322 Identities=19% Similarity=0.127 Sum_probs=220.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+..++.+|. .|+++|..+...+..|+ |+.++||+|||++|.+|++. .+..+.|++||..||.|.++.+..
T Consensus 46 rEa~~R~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~ 122 (745)
T TIGR00963 46 REASKRVLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYR 122 (745)
T ss_pred HHHHHHHhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 3456666774 57788888888777766 99999999999999999863 377899999999999999888776
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhh-hchhhhh------hhhhcCcccEEEEecccccccc----
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF-LNADFLS------IFTATSLISLVVVDEAHCVSEW---- 330 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L-~~~~~~~------~~~~~~~i~~lViDEaH~i~~~---- 330 (815)
++..+.+.+++...+....+ .++|+|+||++| .+.+..+ ... +..+.++||||+|.++--
T Consensus 123 ~LGLsv~~i~g~~~~~~r~~~y------~~dIvyGT~~rlgfDyLrd~~~~~~~~~~-~r~l~~aIIDEaDs~LIDeaRt 195 (745)
T TIGR00963 123 FLGLSVGLILSGMSPEERREAY------ACDITYGTNNELGFDYLRDNMAHSKEEKV-QRPFHFAIIDEVDSILIDEART 195 (745)
T ss_pred cCCCeEEEEeCCCCHHHHHHhc------CCCEEEECCCchhhHHHhcccccchhhhh-ccccceeEeecHHHHhHHhhhh
Confidence 35566666666654433322 379999999999 5443332 122 678999999999998530
Q ss_pred -----cc--CchHHHHHHHHHHHHHhcc----------------------------------------------------
Q 036378 331 -----SH--NFRPSYMRLRASLLRARLN---------------------------------------------------- 351 (815)
Q Consensus 331 -----g~--~fr~~~~~i~~~~~~~~~~---------------------------------------------------- 351 (815)
|. .-..-|... ..+.+....
T Consensus 196 pLiisg~~~~~~~ly~~a-~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~ 274 (745)
T TIGR00963 196 PLIISGPAEKSTELYLQA-NRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKE 274 (745)
T ss_pred HHhhcCCCCCchHHHHHH-HHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHH
Confidence 10 000011111 111111000
Q ss_pred -----------------------------------------------------------------cceeEeeecccChhH
Q 036378 352 -----------------------------------------------------------------VECILAMTATATTTT 366 (815)
Q Consensus 352 -----------------------------------------------------------------~~~vl~lSAT~~~~~ 366 (815)
-..+.+||+|+..+
T Consensus 275 l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te- 353 (745)
T TIGR00963 275 LFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTE- 353 (745)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHH-
Confidence 01234445554322
Q ss_pred HHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHH--hhccccceEEEecchHHHHHHHHHHhh
Q 036378 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH--RSSKHYYILQISGKHFETDLISRYLCD 444 (815)
Q Consensus 367 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~ivf~~s~~~~e~l~~~L~~ 444 (815)
...+.+..+++ ++.-+..++..... ..+........++..+.... ...++.|++|||++...++.+++.|.+
T Consensus 354 ~~E~~~iY~l~---vv~IPtnkp~~R~d---~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~ 427 (745)
T TIGR00963 354 EEEFEKIYNLE---VVVVPTNRPVIRKD---LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKE 427 (745)
T ss_pred HHHHHHHhCCC---EEEeCCCCCeeeee---CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 12223333322 22222222222111 11111111111222222222 234688999999999999999999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCC-------ccEEEEeCCCCCHHHHHHHHcccCCCC
Q 036378 445 NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD-------VGAVIHYSLPESLEEYVQEIGRAGRDG 517 (815)
Q Consensus 445 ~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~-------v~~VI~~d~P~s~~~y~Qr~GRaGR~g 517 (815)
.|+.+..+||+ +.+|+..+..|+.+...|+||||++|||+|++. .-+||++++|.|...|.|++||+||.|
T Consensus 428 ~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG 505 (745)
T TIGR00963 428 RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQG 505 (745)
T ss_pred cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCC
Confidence 99999999999 789999999999999999999999999999998 559999999999999999999999999
Q ss_pred CCceEEEEeccccH
Q 036378 518 RLSYCHLFLDDITY 531 (815)
Q Consensus 518 ~~g~~i~l~~~~d~ 531 (815)
.+|.+..|++.+|-
T Consensus 506 ~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 506 DPGSSRFFLSLEDN 519 (745)
T ss_pred CCcceEEEEeccHH
Confidence 99999999998864
No 79
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2e-30 Score=304.07 Aligned_cols=306 Identities=16% Similarity=0.172 Sum_probs=249.2
Q ss_pred hcCCCCCCHHHHHHHHHHHc----C--CCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHHHHHHHHHhcCC---
Q 036378 196 VYGYDSFRDGQLEAIKMVLD----K--KSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 196 ~~g~~~~~~~Q~~ai~~il~----g--~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.|+|. -||-|..||..+.+ + .|-|+||..|.|||.+++-+|+ +.+++|.|+|||.-|++|.++.|+.
T Consensus 590 ~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~ 668 (1139)
T COG1197 590 SFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFA 668 (1139)
T ss_pred cCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhc
Confidence 37875 68999999999884 3 4889999999999999887765 5589999999999999999999987
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHH
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRL 341 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i 341 (815)
.++...+....+..+....++.+..|.+||||||.--|... +. +.+++++||||-|++. .+.
T Consensus 669 ~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kd-----v~-FkdLGLlIIDEEqRFG----------Vk~ 732 (1139)
T COG1197 669 GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKD-----VK-FKDLGLLIIDEEQRFG----------VKH 732 (1139)
T ss_pred CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCC-----cE-EecCCeEEEechhhcC----------ccH
Confidence 24566777788899999999999999999999997655332 23 7899999999999986 222
Q ss_pred HHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeec-cccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhc
Q 036378 342 RASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQK-AQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS 420 (815)
Q Consensus 342 ~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~ 420 (815)
+..++.......+|-|||||.|+++...+ .++..-.++.+ +..|-++...|...++..-. . .-+.+..
T Consensus 733 -KEkLK~Lr~~VDvLTLSATPIPRTL~Msm--~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ir--e------AI~REl~ 801 (1139)
T COG1197 733 -KEKLKELRANVDVLTLSATPIPRTLNMSL--SGIRDLSVIATPPEDRLPVKTFVSEYDDLLIR--E------AILRELL 801 (1139)
T ss_pred -HHHHHHHhccCcEEEeeCCCCcchHHHHH--hcchhhhhccCCCCCCcceEEEEecCChHHHH--H------HHHHHHh
Confidence 34466667788999999999999986444 44444444543 44566676666554443221 0 1233455
Q ss_pred cccceEEEecchHHHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeC
Q 036378 421 KHYYILQISGKHFETDLISRYLCDN--SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYS 498 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d 498 (815)
.++++-..+|..+..+.+++.|++. ...+.+.||.|+..+-++++.+|.+|+.+|||||.+.+.|||+|+++++|.-+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIER 881 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEec
Confidence 6777777799999999999999985 56789999999999999999999999999999999999999999999988666
Q ss_pred CCC-CHHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 499 LPE-SLEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 499 ~P~-s~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
.-. .+.+.+|..||+||..+.|+||++|.+.
T Consensus 882 AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 882 ADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 544 8999999999999999999999999865
No 80
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.97 E-value=3.1e-31 Score=275.35 Aligned_cols=283 Identities=16% Similarity=0.168 Sum_probs=193.4
Q ss_pred cEEEEcccHHHHHHHHHhcCC---Cceeeeecc--CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCccc
Q 036378 243 LTLVVCPLVALMIDQLRHLPP---VIHGGFLSS--SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLIS 317 (815)
Q Consensus 243 ~~lVl~P~~~L~~q~~~~l~~---~~~~~~i~~--~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~ 317 (815)
.++|+-|.++|++|.++.+.+ .+..-.+.+ .+.+.-...+...+.+| .+|+|+||+|+.+......+. +..++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g-~~ivvGtpgRl~~~is~g~~~-lt~cr 365 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDG-THIVVGTPGRLLQPISKGLVT-LTHCR 365 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcC-ceeeecCchhhhhhhhcccee-eeeeE
Confidence 589999999999999986655 232222221 11223344556666777 899999999999887766665 77899
Q ss_pred EEEEeccccccccccCchHHHHHHHHHHHHHhc--ccceeEeeecccChhHHHHHH-HHhcCCccceeecc-ccCCCeeE
Q 036378 318 LVVVDEAHCVSEWSHNFRPSYMRLRASLLRARL--NVECILAMTATATTTTLRDVM-SALEIPLSNLIQKA-QLRDNLQL 393 (815)
Q Consensus 318 ~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~--~~~~vl~lSAT~~~~~~~~i~-~~l~~~~~~~~~~~-~~~~~l~~ 393 (815)
++|+|||+-++.. ++..-+.+....+..-.. ...|.+.+|||...-....+. +.+.+|...-.+.. ..+...+.
T Consensus 366 FlvlDead~lL~q--gy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 366 FLVLDEADLLLGQ--GYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred EEEecchhhhhhc--ccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 9999999999754 444444443232222222 235889999998652222222 23333322211111 11111111
Q ss_pred EEEecCCcc----------------------------chhhhhhHH-----HHHHHHhhccccceEEEecchHHHHHHHH
Q 036378 394 SVSLSGNNR----------------------------QNERSAYVD-----EVFSFHRSSKHYYILQISGKHFETDLISR 440 (815)
Q Consensus 394 ~v~~~~~~~----------------------------~~~~~~~~~-----~l~~l~~~~~~~~~ivf~~s~~~~e~l~~ 440 (815)
.+....... ......... .-....+...-.+.++||+|+..|+.|.+
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 111110000 000000000 01122334456789999999999999999
Q ss_pred HHhhCC---CcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCC
Q 036378 441 YLCDNS---ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517 (815)
Q Consensus 441 ~L~~~g---~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g 517 (815)
++.+.| +.++++||+..+.||.+.++.|..+.++.||||++++||||+.++-++|+..+|....+|+||+||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 999865 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeccc
Q 036378 518 RLSYCHLFLDDI 529 (815)
Q Consensus 518 ~~g~~i~l~~~~ 529 (815)
+.|.++.++...
T Consensus 604 rmglaislvat~ 615 (725)
T KOG0349|consen 604 RMGLAISLVATV 615 (725)
T ss_pred hcceeEEEeecc
Confidence 999999998643
No 81
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=287.78 Aligned_cols=353 Identities=17% Similarity=0.218 Sum_probs=259.0
Q ss_pred HhcCCCCCCHHHHHHHHHHHc-CCCEEEEcCCChhHHHHHHHHHHHc-------------CCcEEEEcccHHHHHHHHHh
Q 036378 195 LVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMIL-------------PGLTLVVCPLVALMIDQLRH 260 (815)
Q Consensus 195 ~~~g~~~~~~~Q~~ai~~il~-g~d~li~apTGsGKTl~~~lp~l~~-------------~~~~lVl~P~~~L~~q~~~~ 260 (815)
.+|+|..|+.+|.+++|.+.. +.++|++||||||||.+|++.++.. +-++++|+|++||+...++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 458999999999999999886 5599999999999999999998743 45799999999999999999
Q ss_pred cCCCc-----eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhch--hhhhhhhhcCcccEEEEeccccccccccC
Q 036378 261 LPPVI-----HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA--DFLSIFTATSLISLVVVDEAHCVSEWSHN 333 (815)
Q Consensus 261 l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~--~~~~~~~~~~~i~~lViDEaH~i~~~g~~ 333 (815)
+.+.+ ....+.+.+.....+ +. +++|+|+|||++--. ........+..+++|||||+|.+-+ +
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~te-----i~--~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd---~ 253 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTE-----IA--DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD---D 253 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHH-----HH--hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC---c
Confidence 98733 344444444333222 11 589999999998432 1121233366899999999999864 3
Q ss_pred chHHHHHHHHHHHHH---hcccceeEeeecccChhHHHHHHHHhcCCcc---ceeeccccCCCeeEEEEecCCccchhhh
Q 036378 334 FRPSYMRLRASLLRA---RLNVECILAMTATATTTTLRDVMSALEIPLS---NLIQKAQLRDNLQLSVSLSGNNRQNERS 407 (815)
Q Consensus 334 fr~~~~~i~~~~~~~---~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~v~~~~~~~~~~~~ 407 (815)
--|....|+.+.++. .....+++++|||.+. ..|+..+|..+.. ..+...+.+.++...+.-...+......
T Consensus 254 RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN--~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~ 331 (1230)
T KOG0952|consen 254 RGPVLETIVARTLRLVESSQSMIRIVGLSATLPN--YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQK 331 (1230)
T ss_pred ccchHHHHHHHHHHHHHhhhhheEEEEeeccCCC--HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhh
Confidence 445556666665543 3345689999999865 5789999987522 2345556666676666554444111111
Q ss_pred hhHHHH--HHHH-hhccccceEEEecchHHHHHHHHHHhhC-----------------------CCcEEEecCCCCHHHH
Q 036378 408 AYVDEV--FSFH-RSSKHYYILQISGKHFETDLISRYLCDN-----------------------SISVKSYHSGIPAKDR 461 (815)
Q Consensus 408 ~~~~~l--~~l~-~~~~~~~~ivf~~s~~~~e~l~~~L~~~-----------------------g~~v~~~h~~~~~~~R 461 (815)
...+.. .... ....+.+++|||.+|..+...|+.|.+. .....++|+||.-.+|
T Consensus 332 ~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR 411 (1230)
T KOG0952|consen 332 KNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDR 411 (1230)
T ss_pred hhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhH
Confidence 111111 1112 2346789999999999999999998762 1356789999999999
Q ss_pred HHHHHHHhcCCceEEEEccccccccccCCccEEE----EeCCCC------CHHHHHHHHcccCCC--CCCceEEEEeccc
Q 036378 462 SRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI----HYSLPE------SLEEYVQEIGRAGRD--GRLSYCHLFLDDI 529 (815)
Q Consensus 462 ~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI----~~d~P~------s~~~y~Qr~GRaGR~--g~~g~~i~l~~~~ 529 (815)
..+.+.|..|-++||+||..++.|+|.|+--++| .||... +.-+-+|..|||||- +..|.++++.+.+
T Consensus 412 ~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 412 QLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred HHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 9999999999999999999999999999766555 244443 667889999999995 4569999999999
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHhhcC
Q 036378 530 TYFRLRSLMYSDGVDEYAINKFLCQVFTNG 559 (815)
Q Consensus 530 d~~~l~~~~~~~~~~~~~i~~~l~~~~~~~ 559 (815)
-+.....++....+-+..+...|...++++
T Consensus 492 kl~~Y~sLl~~~~piES~~~~~L~dnLnAE 521 (1230)
T KOG0952|consen 492 KLDHYESLLTGQNPIESQLLPCLIDNLNAE 521 (1230)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhhhhh
Confidence 999999998877776666666555555553
No 82
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=285.24 Aligned_cols=324 Identities=20% Similarity=0.255 Sum_probs=223.0
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----CCcEEEEcccHHHHHHHHHhcCCCc-e--eee
Q 036378 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-----PGLTLVVCPLVALMIDQLRHLPPVI-H--GGF 269 (815)
Q Consensus 198 g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-----~~~~lVl~P~~~L~~q~~~~l~~~~-~--~~~ 269 (815)
+.-.+|.+|.+++..+| |+++|+++|||+|||.++...++.+ .+++|+++|++-|+.||...+.... + ...
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~ 137 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTG 137 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccccee
Confidence 45579999999999999 9999999999999999988888754 7899999999999999998887743 2 112
Q ss_pred eccC-CChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHH
Q 036378 270 LSSS-QRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRA 348 (815)
Q Consensus 270 i~~~-~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~ 348 (815)
..++ .....+...+. ..+|+|+||..|.+.+.......++.+.++||||||+-.. .-.|..++..++..
T Consensus 138 ~l~~~~~~~~r~~i~~-----s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~k-----n~~Y~~Vmr~~l~~ 207 (746)
T KOG0354|consen 138 QLGDTVPRSNRGEIVA-----SKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSK-----NHPYNNIMREYLDL 207 (746)
T ss_pred eccCccCCCchhhhhc-----ccceEEeChHhhhhhcccccccccceEEEEEEcccccccc-----cccHHHHHHHHHHh
Confidence 2222 22222222222 4799999999999877666655468899999999999852 34677776666655
Q ss_pred hcccceeEeeecccChhHHHHHHHH---hcC----Cc-------------------c-----------------------
Q 036378 349 RLNVECILAMTATATTTTLRDVMSA---LEI----PL-------------------S----------------------- 379 (815)
Q Consensus 349 ~~~~~~vl~lSAT~~~~~~~~i~~~---l~~----~~-------------------~----------------------- 379 (815)
.....|+|+||||+...... +... |.. .. .
T Consensus 208 k~~~~qILgLTASpG~~~~~-v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l 286 (746)
T KOG0354|consen 208 KNQGNQILGLTASPGSKLEQ-VQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQL 286 (746)
T ss_pred hhccccEEEEecCCCccHHH-HHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHH
Confidence 55555999999999853221 1111 000 00 0
Q ss_pred ---ceeecc-----c--------------cCCCee------------------EEEE------ecCCccch---hh----
Q 036378 380 ---NLIQKA-----Q--------------LRDNLQ------------------LSVS------LSGNNRQN---ER---- 406 (815)
Q Consensus 380 ---~~~~~~-----~--------------~~~~l~------------------~~v~------~~~~~~~~---~~---- 406 (815)
.++... . .+.+-. ..+. ...+.... .+
T Consensus 287 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~ 366 (746)
T KOG0354|consen 287 QEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKL 366 (746)
T ss_pred HhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHH
Confidence 000000 0 000000 0000 00000000 00
Q ss_pred ---------------------------hhhHHH----HHHHHhhccccceEEEecchHHHHHHHHHHhh---CCCcEEEe
Q 036378 407 ---------------------------SAYVDE----VFSFHRSSKHYYILQISGKHFETDLISRYLCD---NSISVKSY 452 (815)
Q Consensus 407 ---------------------------~~~~~~----l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~---~g~~v~~~ 452 (815)
..++.. +....+.....++|+||.+|..+..|..+|.. .|+.+..+
T Consensus 367 ~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~f 446 (746)
T KOG0354|consen 367 ELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIF 446 (746)
T ss_pred HhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccccee
Confidence 000011 11112233457899999999999999999983 34444444
Q ss_pred c--------CCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEE
Q 036378 453 H--------SGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHL 524 (815)
Q Consensus 453 h--------~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~ 524 (815)
- .+|++.++.+++++|++|+++|||||++++.|+|++.++.||-||...|....+||.|| ||. +.|.|++
T Consensus 447 iGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vl 524 (746)
T KOG0354|consen 447 IGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVL 524 (746)
T ss_pred eeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEE
Confidence 3 48999999999999999999999999999999999999999999999999999999999 998 6899999
Q ss_pred EeccccHHHHH
Q 036378 525 FLDDITYFRLR 535 (815)
Q Consensus 525 l~~~~d~~~l~ 535 (815)
+++.......+
T Consensus 525 l~t~~~~~~~E 535 (746)
T KOG0354|consen 525 LTTGSEVIEFE 535 (746)
T ss_pred EEcchhHHHHH
Confidence 99865544444
No 83
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=5.2e-29 Score=287.94 Aligned_cols=310 Identities=17% Similarity=0.147 Sum_probs=207.8
Q ss_pred CCCCHHHHHHHHHHHc-C--CCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCCc--eeeeeccCC
Q 036378 200 DSFRDGQLEAIKMVLD-K--KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVI--HGGFLSSSQ 274 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~-g--~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~~--~~~~i~~~~ 274 (815)
..+||+|++|+..+.. | +..++++|||+|||++.+..+......+|||||+..|+.||.++|.++. ....+....
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~t 333 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFT 333 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 3689999999999884 3 3789999999999999888777778899999999999999999998742 222211111
Q ss_pred ChHHHHHHHHHHhcCCceEEEeChhhhhchhh-----hhhhhhc--CcccEEEEeccccccccccCchHHHHHHHHHHHH
Q 036378 275 RPEEVAETIRLIQVGAIKVLFVSPERFLNADF-----LSIFTAT--SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR 347 (815)
Q Consensus 275 ~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~-----~~~~~~~--~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~ 347 (815)
+ .... . ..+...|+|+|+..+..... ...+..+ ..+++||+||||.+.. +.|..+..
T Consensus 334 g-~~k~-~----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA------~~fr~il~---- 397 (732)
T TIGR00603 334 S-DAKE-R----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA------AMFRRVLT---- 397 (732)
T ss_pred c-Cccc-c----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH------HHHHHHHH----
Confidence 1 1100 0 11246899999998754211 1111212 3689999999998842 33444322
Q ss_pred HhcccceeEeeecccChhHH--HHHHHHhcCCc-----cceeeccccCCCeeEEEEecCCccc----------h------
Q 036378 348 ARLNVECILAMTATATTTTL--RDVMSALEIPL-----SNLIQKAQLRDNLQLSVSLSGNNRQ----------N------ 404 (815)
Q Consensus 348 ~~~~~~~vl~lSAT~~~~~~--~~i~~~l~~~~-----~~~~~~~~~~~~l~~~v~~~~~~~~----------~------ 404 (815)
. ......|+||||+..+.. .++...++-.. ...+...++-+.....+...-.... .
T Consensus 398 ~-l~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~ 476 (732)
T TIGR00603 398 I-VQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYV 476 (732)
T ss_pred h-cCcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhh
Confidence 1 233467999999976432 12222222111 0111122222221112211111000 0
Q ss_pred hhhhhHHHHHHHHhhc--cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC-CceEEEEccc
Q 036378 405 ERSAYVDEVFSFHRSS--KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN-KIRVVVATVA 481 (815)
Q Consensus 405 ~~~~~~~~l~~l~~~~--~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g-~~~VLVaT~~ 481 (815)
....++..+..+++.. .+.++||||.+...++.++..|. +..+||+++..+|.+++++|+.| .+++||+|++
T Consensus 477 ~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkV 551 (732)
T TIGR00603 477 MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKV 551 (732)
T ss_pred hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecc
Confidence 0011122233344333 56799999999999999999883 56789999999999999999875 8899999999
Q ss_pred cccccccCCccEEEEeCCC-CCHHHHHHHHcccCCCCCCceE-------EEEeccccH
Q 036378 482 FGMGLDKRDVGAVIHYSLP-ESLEEYVQEIGRAGRDGRLSYC-------HLFLDDITY 531 (815)
Q Consensus 482 ~~~GID~p~v~~VI~~d~P-~s~~~y~Qr~GRaGR~g~~g~~-------i~l~~~~d~ 531 (815)
+++|||+|++++||+++.| .|...|+||+||++|.+..|.+ |.|++.++.
T Consensus 552 gdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 552 GDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred cccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999999999999999998 5999999999999998766554 777776643
No 84
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=3.4e-28 Score=295.13 Aligned_cols=313 Identities=16% Similarity=0.123 Sum_probs=209.5
Q ss_pred cCCCCCCHHHH---HHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc------CCcEEEEcccHHHHHHHHHhcCC--Cc
Q 036378 197 YGYDSFRDGQL---EAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL------PGLTLVVCPLVALMIDQLRHLPP--VI 265 (815)
Q Consensus 197 ~g~~~~~~~Q~---~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~------~~~~lVl~P~~~L~~q~~~~l~~--~~ 265 (815)
..|..--|+.. +++..+..++.++++|+||||||. ++|.+.. .+.+++..|.+--+.....++.+ +.
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCC
Confidence 45655556544 566666677888999999999999 7787643 24566778888777766666554 12
Q ss_pred eee-eeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEecccc-ccccccCchHHHHHHHH
Q 036378 266 HGG-FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHC-VSEWSHNFRPSYMRLRA 343 (815)
Q Consensus 266 ~~~-~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~-i~~~g~~fr~~~~~i~~ 343 (815)
..+ .+......... ...+.+|+|+|+++|+..+.... .+.++++|||||||. ..+. +|--.+. .
T Consensus 138 ~lG~~VGY~vR~~~~-------~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDEaHERsL~~--D~LL~lL---k 203 (1283)
T TIGR01967 138 PLGEKVGYKVRFHDQ-------VSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDEAHERSLNI--DFLLGYL---K 203 (1283)
T ss_pred CcceEEeeEEcCCcc-------cCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcCcchhhccc--hhHHHHH---H
Confidence 211 11111111111 12358999999999998765443 278999999999995 5543 5544432 3
Q ss_pred HHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCcc----chhhhhhHHHHHHHHhh
Q 036378 344 SLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNR----QNERSAYVDEVFSFHRS 419 (815)
Q Consensus 344 ~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~----~~~~~~~~~~l~~l~~~ 419 (815)
.++.. .+..++|+||||+..+ .+.+.+.......+.....+ +........... ..........+..+...
T Consensus 204 ~il~~-rpdLKlIlmSATld~~---~fa~~F~~apvI~V~Gr~~P--Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~ 277 (1283)
T TIGR01967 204 QLLPR-RPDLKIIITSATIDPE---RFSRHFNNAPIIEVSGRTYP--VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE 277 (1283)
T ss_pred HHHhh-CCCCeEEEEeCCcCHH---HHHHHhcCCCEEEECCCccc--ceeEEecccccccchhhhHHHHHHHHHHHHHhh
Confidence 33332 3567899999999753 45555543222112221122 222111111110 01111112222222222
Q ss_pred ccccceEEEecchHHHHHHHHHHhhCC---CcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE
Q 036378 420 SKHYYILQISGKHFETDLISRYLCDNS---ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH 496 (815)
Q Consensus 420 ~~~~~~ivf~~s~~~~e~l~~~L~~~g---~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~ 496 (815)
..+.++||++++.+++.+++.|.+.+ +.+..+||+|+.++|.++++.+ +..+||||||++++|||+|+|++||+
T Consensus 278 -~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVID 354 (1283)
T TIGR01967 278 -GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVID 354 (1283)
T ss_pred -CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEe
Confidence 45789999999999999999999764 4588999999999999987654 34799999999999999999999999
Q ss_pred eCCCC------------------CHHHHHHHHcccCCCCCCceEEEEeccccHHHHH
Q 036378 497 YSLPE------------------SLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLR 535 (815)
Q Consensus 497 ~d~P~------------------s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~ 535 (815)
+++++ |.++|.||+|||||.| +|.||.||+++++..+.
T Consensus 355 sGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~~ 410 (1283)
T TIGR01967 355 TGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSRP 410 (1283)
T ss_pred CCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhhh
Confidence 98543 7789999999999997 99999999999886654
No 85
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.95 E-value=7.2e-27 Score=279.24 Aligned_cols=317 Identities=18% Similarity=0.194 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCChhHHHHHHHHHH---Hc--CCcEEEEcccHHHHHHHHHhcCCC--ceeeeec
Q 036378 201 SFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAM---IL--PGLTLVVCPLVALMIDQLRHLPPV--IHGGFLS 271 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g--~d~li~apTGsGKTl~~~lp~l---~~--~~~~lVl~P~~~L~~q~~~~l~~~--~~~~~i~ 271 (815)
.|.|+|.+++..++.. ..+|+.-++|.|||+-..+.+- .. ..++|||||. +|..||..++.+. +....+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 6899999999887754 3789999999999987655542 22 3589999998 8999999999652 2222222
Q ss_pred cCCChHHHHHHHHHHhcCCceEEEeChhhhhch-hhhhhhhhcCcccEEEEeccccccccccC-chHHHHHHHHHHHHHh
Q 036378 272 SSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA-DFLSIFTATSLISLVVVDEAHCVSEWSHN-FRPSYMRLRASLLRAR 349 (815)
Q Consensus 272 ~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~-~~~~~~~~~~~i~~lViDEaH~i~~~g~~-fr~~~~~i~~~~~~~~ 349 (815)
... .......-.. .....+++|+|.+.+... .....+. -..+++|||||||++. |..+ -...|..+ ..+..
T Consensus 231 ~~~-~~~~~~~~~~-pf~~~~~vI~S~~~l~~~~~~~~~l~-~~~wdlvIvDEAH~lk-~~~~~~s~~y~~v-~~La~-- 303 (956)
T PRK04914 231 EER-YAEAQHDADN-PFETEQLVICSLDFLRRNKQRLEQAL-AAEWDLLVVDEAHHLV-WSEEAPSREYQVV-EQLAE-- 303 (956)
T ss_pred Ccc-hhhhcccccC-ccccCcEEEEEHHHhhhCHHHHHHHh-hcCCCEEEEechhhhc-cCCCCcCHHHHHH-HHHhh--
Confidence 211 1110000000 001357999999988753 2222232 2478999999999996 3211 12235444 22221
Q ss_pred cccceeEeeecccChhHHHHHHHHhcCCccce------------------------------------------------
Q 036378 350 LNVECILAMTATATTTTLRDVMSALEIPLSNL------------------------------------------------ 381 (815)
Q Consensus 350 ~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~------------------------------------------------ 381 (815)
..+.+++|||||......++...|.+-.+..
T Consensus 304 -~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 304 -VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIE 382 (956)
T ss_pred -ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchh
Confidence 2346899999997533222222221110000
Q ss_pred ----------------------------------eecc-----ccCCCeeEEEEecCCccch------------------
Q 036378 382 ----------------------------------IQKA-----QLRDNLQLSVSLSGNNRQN------------------ 404 (815)
Q Consensus 382 ----------------------------------~~~~-----~~~~~l~~~v~~~~~~~~~------------------ 404 (815)
++.. .. +...+...........
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~f-p~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~p 461 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGF-PKRELHPIPLPLPEQYQTAIKVSLEARARDMLYP 461 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCC-CcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCH
Confidence 0000 00 0000000000000000
Q ss_pred --------------hhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHH-hhCCCcEEEecCCCCHHHHHHHHHHHh
Q 036378 405 --------------ERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYL-CDNSISVKSYHSGIPAKDRSRIQELFC 469 (815)
Q Consensus 405 --------------~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L-~~~g~~v~~~h~~~~~~~R~~i~~~F~ 469 (815)
....++..+..+++.....+++|||+++..+..+++.| ...|+.+..+||+|+..+|.++++.|+
T Consensus 462 e~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~ 541 (956)
T PRK04914 462 EQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA 541 (956)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh
Confidence 00012233445555556789999999999999999999 467999999999999999999999999
Q ss_pred cC--CceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEec
Q 036378 470 SN--KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527 (815)
Q Consensus 470 ~g--~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~ 527 (815)
++ ..+|||||+++++|+|++.+++|||||+|++++.|.||+||+||.|+.+.+.+++.
T Consensus 542 ~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 542 DEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred cCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 84 69999999999999999999999999999999999999999999999988766653
No 86
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=9.1e-27 Score=262.77 Aligned_cols=304 Identities=22% Similarity=0.245 Sum_probs=211.5
Q ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCCceeeeeccC
Q 036378 198 GYDSFRDGQLEAIKMVLD----KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSS 273 (815)
Q Consensus 198 g~~~~~~~Q~~ai~~il~----g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~ 273 (815)
....+|++|++|+.++.. ++..++++|||+|||.+++..+-.....+|||+|+.+|+.||.+.+.+........+.
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~ 112 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGI 112 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccce
Confidence 445799999999999998 8899999999999999999888888888999999999999999888774322100011
Q ss_pred CChHHHHHHHHHHhcCC-ceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhccc
Q 036378 274 QRPEEVAETIRLIQVGA-IKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNV 352 (815)
Q Consensus 274 ~~~~~~~~~~~~l~~g~-~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~ 352 (815)
.+..... . . ..|.|+|-..+.......... ...+++||+||||++.. +.|..+ ...+...
T Consensus 113 ~~~~~~~-----~---~~~~i~vat~qtl~~~~~l~~~~-~~~~~liI~DE~Hh~~a------~~~~~~-~~~~~~~--- 173 (442)
T COG1061 113 YGGGEKE-----L---EPAKVTVATVQTLARRQLLDEFL-GNEFGLIIFDEVHHLPA------PSYRRI-LELLSAA--- 173 (442)
T ss_pred ecCceec-----c---CCCcEEEEEhHHHhhhhhhhhhc-ccccCEEEEEccccCCc------HHHHHH-HHhhhcc---
Confidence 1111100 0 1 369999999887653112221 33699999999999863 344444 2222221
Q ss_pred ceeEeeecccChhHH---HHHHHHhcC-----CccceeeccccCCCeeEEEEecCCccchh-------------------
Q 036378 353 ECILAMTATATTTTL---RDVMSALEI-----PLSNLIQKAQLRDNLQLSVSLSGNNRQNE------------------- 405 (815)
Q Consensus 353 ~~vl~lSAT~~~~~~---~~i~~~l~~-----~~~~~~~~~~~~~~l~~~v~~~~~~~~~~------------------- 405 (815)
..+|+||||+..... .++...++- .....+....+.+...+.+..........
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 253 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTL 253 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhh
Confidence 128999999875542 223333320 01111222333333333333211111000
Q ss_pred ------------hhhhHHHHHHHHhhc-cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 036378 406 ------------RSAYVDEVFSFHRSS-KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK 472 (815)
Q Consensus 406 ------------~~~~~~~l~~l~~~~-~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~ 472 (815)
.......+..++... ...++++|+.+..+++.++..+...|+ +..+.+..+..+|..+++.|+.|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 254 RAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC
Confidence 000111122222222 467999999999999999999999988 999999999999999999999999
Q ss_pred ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCC-CCCCce
Q 036378 473 IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGR-DGRLSY 521 (815)
Q Consensus 473 ~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR-~g~~g~ 521 (815)
+++||++.++..|+|+|++.++|......|...|+||+||.-| ...++.
T Consensus 333 ~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 333 IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 9999999999999999999999999999999999999999999 433443
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=1.4e-25 Score=266.77 Aligned_cols=310 Identities=17% Similarity=0.143 Sum_probs=197.8
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----CCcEEEEcccHHHHHHHHHhcCCC----c-
Q 036378 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-----PGLTLVVCPLVALMIDQLRHLPPV----I- 265 (815)
Q Consensus 196 ~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-----~~~~lVl~P~~~L~~q~~~~l~~~----~- 265 (815)
.|+...|||.|+.+......+.-+++.+|||+|||.+++..+... ...+++..||+++++++++++.+. +
T Consensus 281 ~~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~ 360 (878)
T PRK09694 281 LDNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFP 360 (878)
T ss_pred ccCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcC
Confidence 455568999999886554456678999999999999988776532 358999999999999999987641 1
Q ss_pred --eeeeeccCCChHHH-H--------------H---HHHHHhcC-----CceEEEeChhhhhchhhhhhhhhcC----cc
Q 036378 266 --HGGFLSSSQRPEEV-A--------------E---TIRLIQVG-----AIKVLFVSPERFLNADFLSIFTATS----LI 316 (815)
Q Consensus 266 --~~~~i~~~~~~~~~-~--------------~---~~~~l~~g-----~~~Ili~TPe~L~~~~~~~~~~~~~----~i 316 (815)
.....++....... . . ..+-+..+ -..|+|+|..+++...+......+. .-
T Consensus 361 ~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~ 440 (878)
T PRK09694 361 SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGR 440 (878)
T ss_pred CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhcc
Confidence 11222222110000 0 0 00011101 1589999999988543332111122 23
Q ss_pred cEEEEeccccccccccCchHHHHHHHHHHHHHh-cccceeEeeecccChhHHHHHHHHhcCCccc-------eee--c--
Q 036378 317 SLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR-LNVECILAMTATATTTTLRDVMSALEIPLSN-------LIQ--K-- 384 (815)
Q Consensus 317 ~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~-~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~-------~~~--~-- 384 (815)
++|||||+|-+- +.+..++..+++.. ....++|+||||++....+.+.+.++..... .+. .
T Consensus 441 svvIiDEVHAyD-------~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~ 513 (878)
T PRK09694 441 SVLIVDEVHAYD-------AYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVN 513 (878)
T ss_pred CeEEEechhhCC-------HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccc
Confidence 589999999663 22333334444332 2345799999999998887777655321000 000 0
Q ss_pred -------ccc----CCCeeEEEEecCCccchhhhhhHHHHHHHHhh-ccccceEEEecchHHHHHHHHHHhhCC---CcE
Q 036378 385 -------AQL----RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS-SKHYYILQISGKHFETDLISRYLCDNS---ISV 449 (815)
Q Consensus 385 -------~~~----~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~ivf~~s~~~~e~l~~~L~~~g---~~v 449 (815)
... .....+.+..............+ ..+.+. ..+.+++|||||++.++.+++.|++.+ ..+
T Consensus 514 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l---~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v 590 (878)
T PRK09694 514 GAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLL---QRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDI 590 (878)
T ss_pred cceeeeccccccccCcceEEEEEeeccccccCHHHHH---HHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceE
Confidence 000 00111111111000000001111 222222 356789999999999999999999865 679
Q ss_pred EEecCCCCHHHH----HHHHHHH-hcCC---ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCC
Q 036378 450 KSYHSGIPAKDR----SRIQELF-CSNK---IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518 (815)
Q Consensus 450 ~~~h~~~~~~~R----~~i~~~F-~~g~---~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~ 518 (815)
..+||+++..+| .++++.| ++|+ .+|||||+++++|||+ ++++||....| ++.|+||+||+||.++
T Consensus 591 ~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 591 DLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999999 4577788 5665 4799999999999999 68999998877 7899999999999976
No 88
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=7.9e-26 Score=260.56 Aligned_cols=337 Identities=21% Similarity=0.237 Sum_probs=249.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCChhHHHHHHHHHHHc--------------CCcEEEEcccHHHHHHHHHhc
Q 036378 197 YGYDSFRDGQLEAIKMVLDKK-STMLVLPTGAGKSLCYQIPAMIL--------------PGLTLVVCPLVALMIDQLRHL 261 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~-d~li~apTGsGKTl~~~lp~l~~--------------~~~~lVl~P~~~L~~q~~~~l 261 (815)
+|+.+|+++|..+.++.+.+. +++++||||+|||-+.++-++.. ..++++++|..+|++.++..|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 688999999999999999877 89999999999999999999843 347899999999999999988
Q ss_pred CCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhh-hhhhcCcccEEEEeccccccccccCch
Q 036378 262 PPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS-IFTATSLISLVVVDEAHCVSEWSHNFR 335 (815)
Q Consensus 262 ~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~-~~~~~~~i~~lViDEaH~i~~~g~~fr 335 (815)
.+. +....+.+....+ .+.+. ...|+++|||..--..... ......-++++||||.|.+- +-|
T Consensus 385 SkRla~~GI~V~ElTgD~~l~-----~~qie--eTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh----DdR 453 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLG-----KEQIE--ETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH----DDR 453 (1674)
T ss_pred HhhccccCcEEEEecccccch-----hhhhh--cceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc----ccc
Confidence 773 3333333332211 11111 5799999999973221110 11112358999999999874 444
Q ss_pred -HHHHHHHHHHHHHh---cccceeEeeecccChhHHHHHHHHhcCCcccee--eccccCCCeeEEEEecCCccchhhhhh
Q 036378 336 -PSYMRLRASLLRAR---LNVECILAMTATATTTTLRDVMSALEIPLSNLI--QKAQLRDNLQLSVSLSGNNRQNERSAY 409 (815)
Q Consensus 336 -~~~~~i~~~~~~~~---~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~v~~~~~~~~~~~~~~ 409 (815)
|....++.+..+.. ....++++||||++. ..|+..++..+...++ ..++.+-++.+.+.-...+....+...
T Consensus 454 GpvLESIVaRt~r~ses~~e~~RlVGLSATLPN--y~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qa 531 (1674)
T KOG0951|consen 454 GPVLESIVARTFRRSESTEEGSRLVGLSATLPN--YEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQA 531 (1674)
T ss_pred chHHHHHHHHHHHHhhhcccCceeeeecccCCc--hhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHH
Confidence 34445544444433 335689999999876 4677887766655443 446677788888877766665544333
Q ss_pred HHHH--HHHHhhccccceEEEecchHHHHHHHHHHhhC-------------------------------------CCcEE
Q 036378 410 VDEV--FSFHRSSKHYYILQISGKHFETDLISRYLCDN-------------------------------------SISVK 450 (815)
Q Consensus 410 ~~~l--~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~-------------------------------------g~~v~ 450 (815)
.+.. .+.++.....+++||+.+|+++-+.|+.+++. .++.+
T Consensus 532 mNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfa 611 (1674)
T KOG0951|consen 532 MNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFA 611 (1674)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccce
Confidence 3322 34566667799999999999999999888731 35788
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEE----EeCC------CCCHHHHHHHHcccCCCCC--
Q 036378 451 SYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI----HYSL------PESLEEYVQEIGRAGRDGR-- 518 (815)
Q Consensus 451 ~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI----~~d~------P~s~~~y~Qr~GRaGR~g~-- 518 (815)
.+|+||+..+|..+.+.|+.|.++|+|+|-.+++|+|.|.-.++| -||. +.++.+-.||.|||||-+-
T Consensus 612 IHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~ 691 (1674)
T KOG0951|consen 612 IHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDT 691 (1674)
T ss_pred eeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCc
Confidence 999999999999999999999999999999999999999777777 3553 4489999999999999754
Q ss_pred CceEEEEeccccHHHHHHhhhcCCCCHH
Q 036378 519 LSYCHLFLDDITYFRLRSLMYSDGVDEY 546 (815)
Q Consensus 519 ~g~~i~l~~~~d~~~l~~~~~~~~~~~~ 546 (815)
.|..+++-+..++.....+.+...+-+.
T Consensus 692 ~gegiiit~~se~qyyls~mn~qLpies 719 (1674)
T KOG0951|consen 692 CGEGIIITDHSELQYYLSLMNQQLPIES 719 (1674)
T ss_pred CCceeeccCchHhhhhHHhhhhcCCChH
Confidence 4777888777787777766655544433
No 89
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=9.4e-25 Score=253.20 Aligned_cols=322 Identities=18% Similarity=0.136 Sum_probs=215.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+..++.+|. .|++.|.-+--.+..|+ |+.|.||+|||++..+|++.. +..+-|++|+--||.+.++.+..
T Consensus 70 rEa~~R~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~ 146 (796)
T PRK12906 70 REGAKRVLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYR 146 (796)
T ss_pred HHHHHHHhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHH
Confidence 3566667784 56777776665565565 999999999999999998754 88999999999999998888876
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh------hcCcccEEEEeccccccc------
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT------ATSLISLVVVDEAHCVSE------ 329 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~------~~~~i~~lViDEaH~i~~------ 329 (815)
++..+.+.+.+...+....+ .++|+|+|...|.-...++.+. ....+.+.||||+|.++=
T Consensus 147 ~LGl~vg~i~~~~~~~~r~~~y------~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartP 220 (796)
T PRK12906 147 WLGLTVGLNLNSMSPDEKRAAY------NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTP 220 (796)
T ss_pred hcCCeEEEeCCCCCHHHHHHHh------cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCc
Confidence 45666776667666655444 4899999999875332222211 135789999999998742
Q ss_pred -----cccCchHHHHHHHHHHHHHhcc-------------------c---------------------------------
Q 036378 330 -----WSHNFRPSYMRLRASLLRARLN-------------------V--------------------------------- 352 (815)
Q Consensus 330 -----~g~~fr~~~~~i~~~~~~~~~~-------------------~--------------------------------- 352 (815)
-......-|..+ ..+...... .
T Consensus 221 Liisg~~~~~~~~y~~~-~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~ 299 (796)
T PRK12906 221 LIISGQAEKATDLYIRA-DRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAH 299 (796)
T ss_pred eecCCCCCcchHHHHHH-HHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHH
Confidence 011111122211 111111000 0
Q ss_pred ----------------------------------------------------------------------------ceeE
Q 036378 353 ----------------------------------------------------------------------------ECIL 356 (815)
Q Consensus 353 ----------------------------------------------------------------------------~~vl 356 (815)
.++.
T Consensus 300 ~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~ 379 (796)
T PRK12906 300 HIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLS 379 (796)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhh
Confidence 1122
Q ss_pred eeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHh--hccccceEEEecchHH
Q 036378 357 AMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR--SSKHYYILQISGKHFE 434 (815)
Q Consensus 357 ~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~ivf~~s~~~ 434 (815)
+||+|+..+ ...+.+..+++ ++.-+..++... ....+........+...+...+. ...+.|++|||++...
T Consensus 380 GmTGTa~~e-~~Ef~~iY~l~---vv~IPtnkp~~r---~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~ 452 (796)
T PRK12906 380 GMTGTAKTE-EEEFREIYNME---VITIPTNRPVIR---KDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIES 452 (796)
T ss_pred ccCCCCHHH-HHHHHHHhCCC---EEEcCCCCCeee---eeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 222222111 11111111111 111111111111 11111111111223333333332 2367899999999999
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccC---Ccc-----EEEEeCCCCCHHHH
Q 036378 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR---DVG-----AVIHYSLPESLEEY 506 (815)
Q Consensus 435 ~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p---~v~-----~VI~~d~P~s~~~y 506 (815)
++.+++.|.+.|++...+||++...++..+.++++.|. |+|||+++|||+|++ +|. +||++++|.|...|
T Consensus 453 se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~ 530 (796)
T PRK12906 453 SERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRID 530 (796)
T ss_pred HHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHH
Confidence 99999999999999999999999888888888888877 999999999999994 899 99999999999999
Q ss_pred HHHHcccCCCCCCceEEEEecccc
Q 036378 507 VQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 507 ~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
.|++||+||.|.+|.+..|++.+|
T Consensus 531 ~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 531 NQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHhhhhccCCCCcceEEEEeccc
Confidence 999999999999999999999876
No 90
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=9.9e-25 Score=251.99 Aligned_cols=329 Identities=18% Similarity=0.175 Sum_probs=244.4
Q ss_pred CCCCHHHHHHHHHHHcC----CCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEcccHHHHHHHHHhcCC--Cceeeee
Q 036378 200 DSFRDGQLEAIKMVLDK----KSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLVALMIDQLRHLPP--VIHGGFL 270 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g----~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~q~~~~l~~--~~~~~~i 270 (815)
..+++.|+.|+..+... ...|+.+.||||||.+|+-.+ +..++.+||++|-++|..|..++|+. +.+...+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vl 276 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVL 276 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhh
Confidence 36789999999999876 578999999999999997554 56688999999999999999999998 5667889
Q ss_pred ccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhc
Q 036378 271 SSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARL 350 (815)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~ 350 (815)
+++++..++...+.++..|+..|||||-..|... +.++++|||||-|.-+- ...-.|.|+....++.+...
T Consensus 277 HS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~P--------f~~LGLIIvDEEHD~sY-Kq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 277 HSGLSPGERYRVWRRARRGEARVVIGTRSALFLP--------FKNLGLIIVDEEHDSSY-KQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred cccCChHHHHHHHHHHhcCCceEEEEechhhcCc--------hhhccEEEEeccccccc-cCCcCCCcCHHHHHHHHHHH
Confidence 9999999999999999999999999999888766 78999999999998763 33347778877778888888
Q ss_pred ccceeEeeecccChhHHHHHHHHhcCCccceeeccccC--CCeeEEEEecCCccchhhhhhHHHH-HHHH-hhccccceE
Q 036378 351 NVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLR--DNLQLSVSLSGNNRQNERSAYVDEV-FSFH-RSSKHYYIL 426 (815)
Q Consensus 351 ~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~--~~l~~~v~~~~~~~~~~~~~~~~~l-~~l~-~~~~~~~~i 426 (815)
...++|+-||||+-+....+...-. ....+.....+ .+-...+............ +...+ ..+. ....+.+++
T Consensus 348 ~~~pvvLgSATPSLES~~~~~~g~y--~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~-lS~~Ll~~i~~~l~~geQ~l 424 (730)
T COG1198 348 ENAPVVLGSATPSLESYANAESGKY--KLLRLTNRAGRARLPRVEIIDMRKEPLETGRS-LSPALLEAIRKTLERGEQVL 424 (730)
T ss_pred hCCCEEEecCCCCHHHHHhhhcCce--EEEEccccccccCCCcceEEeccccccccCcc-CCHHHHHHHHHHHhcCCeEE
Confidence 8999999999999998876633210 00111111111 1111122222222222111 11111 1222 233567788
Q ss_pred EEecch------------------------------------------------------------HHHHHHHHHHhhC-
Q 036378 427 QISGKH------------------------------------------------------------FETDLISRYLCDN- 445 (815)
Q Consensus 427 vf~~s~------------------------------------------------------------~~~e~l~~~L~~~- 445 (815)
+|.|+| ..+|++++.|...
T Consensus 425 lflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F 504 (730)
T COG1198 425 LFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF 504 (730)
T ss_pred EEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC
Confidence 886666 3568888888875
Q ss_pred -CCcEEEecCCCCHHH--HHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCC------CC------CHHHHHHHH
Q 036378 446 -SISVKSYHSGIPAKD--RSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSL------PE------SLEEYVQEI 510 (815)
Q Consensus 446 -g~~v~~~h~~~~~~~--R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~------P~------s~~~y~Qr~ 510 (815)
+..+..+.++.+... -+..++.|.+|+.+|||.|++++.|.|+|+|+.|...|. |. ...-+.|-+
T Consensus 505 P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Qva 584 (730)
T COG1198 505 PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVA 584 (730)
T ss_pred CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHH
Confidence 566777777766533 367899999999999999999999999999999665442 21 455669999
Q ss_pred cccCCCCCCceEEEEeccccHHHHHHhhhc
Q 036378 511 GRAGRDGRLSYCHLFLDDITYFRLRSLMYS 540 (815)
Q Consensus 511 GRaGR~g~~g~~i~l~~~~d~~~l~~~~~~ 540 (815)
|||||.+.+|.+++-.-.-|...++.+...
T Consensus 585 GRAgR~~~~G~VvIQT~~P~hp~i~~~~~~ 614 (730)
T COG1198 585 GRAGRAGKPGEVVIQTYNPDHPAIQALKRG 614 (730)
T ss_pred hhhccCCCCCeEEEEeCCCCcHHHHHHHhc
Confidence 999999999999988776666666666544
No 91
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=7.7e-25 Score=247.12 Aligned_cols=322 Identities=19% Similarity=0.209 Sum_probs=226.2
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHHHHHHHHHhcCC-Cceeeeec
Q 036378 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLS 271 (815)
Q Consensus 196 ~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~ 271 (815)
.|+| ++-.+|++||-.+..|.++++.|+|.+|||+++-.++. .+..++++.+|.++|.+|-++.|+. +..++.+.
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlT 371 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLT 371 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceee
Confidence 3665 47889999999999999999999999999998766554 3478899999999999999999998 33334444
Q ss_pred cCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcc
Q 036378 272 SSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLN 351 (815)
Q Consensus 272 ~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~ 351 (815)
+... .+.+..+||+|.|.|.+.+.+..-. .+++.+||+||+|-+.+-. |.-.. ..++--.+.
T Consensus 372 GDvq-----------inPeAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDEVHYiND~e---RGvVW---EEViIMlP~ 433 (1248)
T KOG0947|consen 372 GDVQ-----------INPEASCLIMTTEILRSMLYRGADL-IRDVEFVIFDEVHYINDVE---RGVVW---EEVIIMLPR 433 (1248)
T ss_pred ccee-----------eCCCcceEeehHHHHHHHHhcccch-hhccceEEEeeeeeccccc---ccccc---eeeeeeccc
Confidence 4321 1225789999999999988877655 6789999999999998631 11111 122334566
Q ss_pred cceeEeeecccChhHHHHHHHHhcCCcc---ceeeccccCCCeeEEEEecCCcc--------------------------
Q 036378 352 VECILAMTATATTTTLRDVMSALEIPLS---NLIQKAQLRDNLQLSVSLSGNNR-------------------------- 402 (815)
Q Consensus 352 ~~~vl~lSAT~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~v~~~~~~~-------------------------- 402 (815)
..++|+||||.+.... +..|.+.... .++.+...+-++...+....+..
T Consensus 434 HV~~IlLSATVPN~~E--FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak 511 (1248)
T KOG0947|consen 434 HVNFILLSATVPNTLE--FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAK 511 (1248)
T ss_pred cceEEEEeccCCChHH--HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccc
Confidence 7899999999887653 6667653222 12222111111111111100000
Q ss_pred -----------------------------------chhh--hhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhC
Q 036378 403 -----------------------------------QNER--SAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDN 445 (815)
Q Consensus 403 -----------------------------------~~~~--~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~ 445 (815)
+... ..++..+ ..++..+--|+++||-+++.|++-+++|...
T Consensus 512 ~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~li-n~L~k~~lLP~VvFvFSkkrCde~a~~L~~~ 590 (1248)
T KOG0947|consen 512 FVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLI-NHLRKKNLLPVVVFVFSKKRCDEYADYLTNL 590 (1248)
T ss_pred ccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHH-HHHhhcccCceEEEEEccccHHHHHHHHhcc
Confidence 0000 0122222 2233344568999999999999999999752
Q ss_pred ---------------------------------------CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccccccc
Q 036378 446 ---------------------------------------SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486 (815)
Q Consensus 446 ---------------------------------------g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GI 486 (815)
--+++++|||+-+--++-|.-.|..|-++||+||..|+|||
T Consensus 591 nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGV 670 (1248)
T KOG0947|consen 591 NLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGV 670 (1248)
T ss_pred CcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhc
Confidence 12578899999999999999999999999999999999999
Q ss_pred ccCCccEEEEeCCCC---------CHHHHHHHHcccCCCCCC--ceEEEEeccc--cHHHHHHhhhc
Q 036378 487 DKRDVGAVIHYSLPE---------SLEEYVQEIGRAGRDGRL--SYCHLFLDDI--TYFRLRSLMYS 540 (815)
Q Consensus 487 D~p~v~~VI~~d~P~---------s~~~y~Qr~GRaGR~g~~--g~~i~l~~~~--d~~~l~~~~~~ 540 (815)
|.|.-.+|+ -.+-+ .+-+|+|++|||||.|-. |+++++.... +...+++++.+
T Consensus 671 NMPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G 736 (1248)
T KOG0947|consen 671 NMPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMG 736 (1248)
T ss_pred CCCceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcC
Confidence 999555554 33322 677999999999999875 7777777554 55666666543
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.4e-23 Score=244.32 Aligned_cols=326 Identities=15% Similarity=0.138 Sum_probs=209.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+.-++.+| ++|+-.+.|-.+.-.+--|+.|+||+|||++|.+|++.. +..++||+|+..||.|.++.+..
T Consensus 72 rEa~~R~lg---~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 72 REVSLRTLG---LRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred HHHHHHHcC---CCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 345566677 344444455555555666999999999999999999843 67799999999999998888876
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhh-hchhhhhhhhh-----cCcccEEEEeccccccc------
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF-LNADFLSIFTA-----TSLISLVVVDEAHCVSE------ 329 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L-~~~~~~~~~~~-----~~~i~~lViDEaH~i~~------ 329 (815)
++..+.+.+++...+....+ .++|+|+||++| .+.+..+.... ...+.++||||||.|+=
T Consensus 149 ~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtP 222 (896)
T PRK13104 149 FLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTP 222 (896)
T ss_pred ccCceEEEEeCCCCHHHHHHHh------CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCc
Confidence 34556666666655543332 489999999999 55543331111 25899999999999852
Q ss_pred -----cccCchHHHHHHHHHHHHHhcc--------------cceeEeeecc--------------cC-------hh---H
Q 036378 330 -----WSHNFRPSYMRLRASLLRARLN--------------VECILAMTAT--------------AT-------TT---T 366 (815)
Q Consensus 330 -----~g~~fr~~~~~i~~~~~~~~~~--------------~~~vl~lSAT--------------~~-------~~---~ 366 (815)
-.......|..+ ..+.+.... ....+.||-. +. .. .
T Consensus 223 LIISg~~~~~~~~y~~~-~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~ 301 (896)
T PRK13104 223 LIISGAAEDSSELYIKI-NSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 (896)
T ss_pred eeeeCCCccchHHHHHH-HHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhH
Confidence 011112223322 222221111 1122223321 00 00 0
Q ss_pred HHHHHHH------hcCCcc-------------------------------------------------------------
Q 036378 367 LRDVMSA------LEIPLS------------------------------------------------------------- 379 (815)
Q Consensus 367 ~~~i~~~------l~~~~~------------------------------------------------------------- 379 (815)
...+... +.....
T Consensus 302 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~k 381 (896)
T PRK13104 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNK 381 (896)
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcch
Confidence 0001110 000000
Q ss_pred ---------------------ceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHH--hhccccceEEEecchHHHH
Q 036378 380 ---------------------NLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFH--RSSKHYYILQISGKHFETD 436 (815)
Q Consensus 380 ---------------------~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~ivf~~s~~~~e 436 (815)
.++.-+..++... ....+........+...+.... ....+.|++|||++...++
T Consensus 382 LsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R---~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE 458 (896)
T PRK13104 382 LSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIR---KDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASE 458 (896)
T ss_pred hccCCCCChhHHHHHHHHhCCCEEECCCCCCcce---ecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 0111111111111 1111111111122222222222 2336789999999999999
Q ss_pred HHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCC--------------------------
Q 036378 437 LISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD-------------------------- 490 (815)
Q Consensus 437 ~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~-------------------------- 490 (815)
.+++.|.+.|+....+||.+.+.++..+.+.|+.|. |+||||++|||+|+.=
T Consensus 459 ~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~ 536 (896)
T PRK13104 459 FLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKE 536 (896)
T ss_pred HHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHH
Confidence 999999999999999999999999999999999995 9999999999999861
Q ss_pred ------------ccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 491 ------------VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 491 ------------v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
==+||--..+.|..-=-|-.|||||.|.||.+..|++-+|
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1268888888899888999999999999999999998776
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=3e-23 Score=241.64 Aligned_cols=322 Identities=19% Similarity=0.158 Sum_probs=218.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+..++.+|. .+++.|.-.--.+..| -|+.|.||+|||+++.+|++. .+..+-|++|+..||.|.++.+..
T Consensus 71 rEa~~R~lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~ 147 (830)
T PRK12904 71 REASKRVLGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYE 147 (830)
T ss_pred HHHHHHHhCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHh
Confidence 3455666774 4667776665555555 499999999999999999963 366788999999999998888876
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhh-hchhhhhhh-----hhcCcccEEEEeccccccc------
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF-LNADFLSIF-----TATSLISLVVVDEAHCVSE------ 329 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L-~~~~~~~~~-----~~~~~i~~lViDEaH~i~~------ 329 (815)
++..+.+.+++...+....+ .++|+|+||++| .+.+..+.. .....+.++||||||.|+=
T Consensus 148 ~LGlsv~~i~~~~~~~er~~~y------~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtp 221 (830)
T PRK12904 148 FLGLSVGVILSGMSPEERREAY------AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTP 221 (830)
T ss_pred hcCCeEEEEcCCCCHHHHHHhc------CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCc
Confidence 45567777777766655543 389999999999 554433221 1256899999999998752
Q ss_pred -----cccCchHHHHHHHHHHHHHhcc-----------------------------------------------------
Q 036378 330 -----WSHNFRPSYMRLRASLLRARLN----------------------------------------------------- 351 (815)
Q Consensus 330 -----~g~~fr~~~~~i~~~~~~~~~~----------------------------------------------------- 351 (815)
-..+...-|..+ ..+.+....
T Consensus 222 LiiSg~~~~~~~~y~~~-~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l 300 (830)
T PRK12904 222 LIISGPAEDSSELYKRA-NKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHEL 300 (830)
T ss_pred eeeECCCCcccHHHHHH-HHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHH
Confidence 000011111111 111111000
Q ss_pred ----------------------------------------------------------------cceeEeeecccChhHH
Q 036378 352 ----------------------------------------------------------------VECILAMTATATTTTL 367 (815)
Q Consensus 352 ----------------------------------------------------------------~~~vl~lSAT~~~~~~ 367 (815)
-..+.+||+|+..+ .
T Consensus 301 ~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te-~ 379 (830)
T PRK12904 301 FKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTE-A 379 (830)
T ss_pred HhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHH-H
Confidence 02345555555432 2
Q ss_pred HHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhh--ccccceEEEecchHHHHHHHHHHhhC
Q 036378 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS--SKHYYILQISGKHFETDLISRYLCDN 445 (815)
Q Consensus 368 ~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~ivf~~s~~~~e~l~~~L~~~ 445 (815)
..+.+..++. ++.-+..++..... ..+........+...+...+.. ..+.|++|||++...++.+++.|.+.
T Consensus 380 ~E~~~iY~l~---vv~IPtnkp~~r~d---~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~ 453 (830)
T PRK12904 380 EEFREIYNLD---VVVIPTNRPMIRID---HPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA 453 (830)
T ss_pred HHHHHHhCCC---EEEcCCCCCeeeee---CCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 2233333332 22222222222211 1111111122223333343322 46789999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCc----------------------------------
Q 036378 446 SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV---------------------------------- 491 (815)
Q Consensus 446 g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v---------------------------------- 491 (815)
|+++..+||. +.+|+..+.+|+.+...|+||||++|||+|++=-
T Consensus 454 gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 531 (830)
T PRK12904 454 GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVL 531 (830)
T ss_pred CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHH
Confidence 9999999995 7899999999999999999999999999998742
Q ss_pred ----cEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 492 ----GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 492 ----~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
=+||--..|.|..---|-.|||||.|.+|.+..|++-+|
T Consensus 532 ~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 532 EAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 269999999999999999999999999999999998776
No 94
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3.7e-24 Score=236.88 Aligned_cols=303 Identities=17% Similarity=0.189 Sum_probs=215.9
Q ss_pred HHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc------CCcEEEEcccHHHHHHHHHhcCC--Cce-eeeeccCCChHH
Q 036378 208 EAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL------PGLTLVVCPLVALMIDQLRHLPP--VIH-GGFLSSSQRPEE 278 (815)
Q Consensus 208 ~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~------~~~~lVl~P~~~L~~q~~~~l~~--~~~-~~~i~~~~~~~~ 278 (815)
+++..+-+++-++++|+||||||. |+|-+.. .+.+.|..|.|--+.....++.. +.. +..+....
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I---- 131 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI---- 131 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEE----
Confidence 344455558999999999999998 7887653 45689999999888877777764 211 11111111
Q ss_pred HHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEee
Q 036378 279 VAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAM 358 (815)
Q Consensus 279 ~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~l 358 (815)
.++.......+|.|.|.+.|++....+.+ +.++++|||||||.-+- ..+-.+.+++.+++. .+.-++|.+
T Consensus 132 ---RFed~ts~~TrikymTDG~LLRE~l~Dp~--LskYsvIIlDEAHERsl----~TDiLlGlLKki~~~-R~~LklIim 201 (674)
T KOG0922|consen 132 ---RFEDSTSKDTRIKYMTDGMLLREILKDPL--LSKYSVIILDEAHERSL----HTDILLGLLKKILKK-RPDLKLIIM 201 (674)
T ss_pred ---EecccCCCceeEEEecchHHHHHHhcCCc--cccccEEEEechhhhhh----HHHHHHHHHHHHHhc-CCCceEEEE
Confidence 12233344689999999999988776655 77999999999998751 222334444444443 345689999
Q ss_pred ecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHH
Q 036378 359 TATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLI 438 (815)
Q Consensus 359 SAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l 438 (815)
|||+..+. +.++|.......+.....+-.+.|.. ..........+..+..+......+.++||.+.+++.+.+
T Consensus 202 SATlda~k---fS~yF~~a~i~~i~GR~fPVei~y~~----~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 202 SATLDAEK---FSEYFNNAPILTIPGRTFPVEILYLK----EPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred eeeecHHH---HHHHhcCCceEeecCCCCceeEEecc----CCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 99998765 44555443333333333332223222 222222223333444454455677899999999999999
Q ss_pred HHHHhhC------CC--cEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCC-----------
Q 036378 439 SRYLCDN------SI--SVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSL----------- 499 (815)
Q Consensus 439 ~~~L~~~------g~--~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~----------- 499 (815)
++.|.+. +. -+..+||.|+.+++.++++.--.|..+|++|||+++..|.+++|++||+-++
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccC
Confidence 9999864 11 3578999999999999999988899999999999999999999999997443
Q ss_pred -------CCCHHHHHHHHcccCCCCCCceEEEEeccccHHHH
Q 036378 500 -------PESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRL 534 (815)
Q Consensus 500 -------P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l 534 (815)
|-|.++-.||+|||||.| +|.|+-+|+++++..+
T Consensus 355 ~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 355 LDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDKM 395 (674)
T ss_pred ccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhhc
Confidence 558889999999999996 9999999999987544
No 95
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=5.9e-24 Score=249.04 Aligned_cols=304 Identities=19% Similarity=0.181 Sum_probs=216.4
Q ss_pred HHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc------CCcEEEEcccHHHHHHHHHhcCCC--ce-eeeeccCCChHH
Q 036378 208 EAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL------PGLTLVVCPLVALMIDQLRHLPPV--IH-GGFLSSSQRPEE 278 (815)
Q Consensus 208 ~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~------~~~~lVl~P~~~L~~q~~~~l~~~--~~-~~~i~~~~~~~~ 278 (815)
+++.++.+++.+++.||||||||. |+|.+.. ++.+.+.-|.|--|.....++... .+ +..+...+.
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iR--- 131 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIR--- 131 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEE---
Confidence 344455558899999999999998 6776543 468899999998888877777652 11 111211111
Q ss_pred HHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEee
Q 036378 279 VAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAM 358 (815)
Q Consensus 279 ~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~l 358 (815)
++.....+..|-|+|.+.|+..+..+.. ++.+++|||||||+-+-. .||- +.+...++....+..++|.|
T Consensus 132 ----fe~~~s~~Trik~mTdGiLlrei~~D~~--Ls~ys~vIiDEaHERSl~-tDil---Lgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 132 ----FESKVSPRTRIKVMTDGILLREIQNDPL--LSGYSVVIIDEAHERSLN-TDIL---LGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred ----eeccCCCCceeEEeccHHHHHHHhhCcc--cccCCEEEEcchhhhhHH-HHHH---HHHHHHHHhhcCCCceEEEE
Confidence 1222234689999999999988766655 789999999999987521 1222 33334445555556889999
Q ss_pred ecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHH
Q 036378 359 TATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLI 438 (815)
Q Consensus 359 SAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l 438 (815)
|||+..+. +..+|+......+.....+-.+.|.-....+. .....+............+.+++|.....+.+.+
T Consensus 202 SATld~~r---fs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~---~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~ 275 (845)
T COG1643 202 SATLDAER---FSAYFGNAPVIEIEGRTYPVEIRYLPEAEADY---ILLDAIVAAVDIHLREGSGSILVFLPGQREIERT 275 (845)
T ss_pred ecccCHHH---HHHHcCCCCEEEecCCccceEEEecCCCCcch---hHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHH
Confidence 99998764 56666644333343433333333321111111 0222222222333344578899999999999999
Q ss_pred HHHHhh----CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCC---------------
Q 036378 439 SRYLCD----NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSL--------------- 499 (815)
Q Consensus 439 ~~~L~~----~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~--------------- 499 (815)
++.|.+ ..+.+..+||.|+.+++.++++--..|+.+||+|||+++.+|.+|+|++||+-+.
T Consensus 276 ~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L 355 (845)
T COG1643 276 AEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRL 355 (845)
T ss_pred HHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceee
Confidence 999998 4578999999999999999988888888889999999999999999999997553
Q ss_pred ---CCCHHHHHHHHcccCCCCCCceEEEEeccccHHH
Q 036378 500 ---PESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFR 533 (815)
Q Consensus 500 ---P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~ 533 (815)
|-|-++..||+|||||.+ +|.||-+|+++++..
T Consensus 356 ~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~~ 391 (845)
T COG1643 356 ETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFLA 391 (845)
T ss_pred eEEEechhhhhhhccccccCC-CceEEEecCHHHHHh
Confidence 347889999999999995 999999999987653
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=6.3e-23 Score=250.92 Aligned_cols=306 Identities=18% Similarity=0.194 Sum_probs=190.3
Q ss_pred CCCCHHHHHHHHHHHc-----CCCEEEEcCCChhHHHHHHHHH--HH---cCCcEEEEcccHHHHHHHHHhcCCC-ceee
Q 036378 200 DSFRDGQLEAIKMVLD-----KKSTMLVLPTGAGKSLCYQIPA--MI---LPGLTLVVCPLVALMIDQLRHLPPV-IHGG 268 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~-----g~d~li~apTGsGKTl~~~lp~--l~---~~~~~lVl~P~~~L~~q~~~~l~~~-~~~~ 268 (815)
..+|++|.+||.++.. .+.+|++++||||||.+++..+ +. ..+++|+|+|+.+|+.|..+.|... ....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 3589999999988763 3579999999999998754333 22 1468999999999999999999874 2111
Q ss_pred -eeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhh----hhcCcccEEEEeccccccc----cc---cCch-
Q 036378 269 -FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF----TATSLISLVVVDEAHCVSE----WS---HNFR- 335 (815)
Q Consensus 269 -~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~----~~~~~i~~lViDEaH~i~~----~g---~~fr- 335 (815)
.+....+..... +.......+|+|+|...+.+..+.... ..+..+++|||||||+... .+ ..|+
T Consensus 492 ~~~~~i~~i~~L~---~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~ 568 (1123)
T PRK11448 492 QTFASIYDIKGLE---DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRD 568 (1123)
T ss_pred cchhhhhchhhhh---hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccch
Confidence 111111111111 112233579999999998765432211 1255789999999999521 00 0111
Q ss_pred --HHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCcc-----ceeeccccC---CCeeEEEEec-------
Q 036378 336 --PSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLS-----NLIQKAQLR---DNLQLSVSLS------- 398 (815)
Q Consensus 336 --~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~-----~~~~~~~~~---~~l~~~v~~~------- 398 (815)
..|... ..++. .+ ....|+|||||...+. ..++.+.. ..+..+++. +++.+.....
T Consensus 569 ~~~~~~~y-r~iL~-yF-dA~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 569 QLDYVSKY-RRVLD-YF-DAVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hhhHHHHH-HHHHh-hc-CccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 112222 23333 22 3568999999986543 23332211 001111111 1111111000
Q ss_pred CC-----------c-----cch----hhhhh-------------HHHHHHHHhhccccceEEEecchHHHHHHHHHHhhC
Q 036378 399 GN-----------N-----RQN----ERSAY-------------VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDN 445 (815)
Q Consensus 399 ~~-----------~-----~~~----~~~~~-------------~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~ 445 (815)
.. . ... ....+ ...+...+......+++|||.++.+++.+++.|.+.
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 00 0 000 00000 011111112223478999999999999999888753
Q ss_pred ------C---CcEEEecCCCCHHHHHHHHHHHhcCCc-eEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCC
Q 036378 446 ------S---ISVKSYHSGIPAKDRSRIQELFCSNKI-RVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGR 515 (815)
Q Consensus 446 ------g---~~v~~~h~~~~~~~R~~i~~~F~~g~~-~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR 515 (815)
+ ..+..+||+++ ++.+++++|+++.. +|+|+++++.+|+|+|.|.+||.+..+.|...|.|++||+.|
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR 799 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATR 799 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhcc
Confidence 2 24667899885 56789999999887 699999999999999999999999999999999999999999
Q ss_pred CC
Q 036378 516 DG 517 (815)
Q Consensus 516 ~g 517 (815)
-.
T Consensus 800 ~~ 801 (1123)
T PRK11448 800 LC 801 (1123)
T ss_pred CC
Confidence 64
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.2e-23 Score=247.54 Aligned_cols=310 Identities=18% Similarity=0.190 Sum_probs=223.0
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEcccHHHHHHHHHhcCC-Ccee----e
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLVALMIDQLRHLPP-VIHG----G 268 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~----~ 268 (815)
+|| ++-++|++|+..+..|.++++++|||+|||++.-.++ +..+.++++++|.+||.+|.+..|.. +... +
T Consensus 116 ~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vG 194 (1041)
T COG4581 116 YPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVG 194 (1041)
T ss_pred CCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhcc
Confidence 565 4789999999999999999999999999998865554 45578899999999999999999987 3322 2
Q ss_pred eeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHH
Q 036378 269 FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRA 348 (815)
Q Consensus 269 ~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~ 348 (815)
.+++..+ .++++.++|+|.|.|.+.+...... +..+..||+||+|+|.+ .+|.-..+. .+-.
T Consensus 195 L~TGDv~-----------IN~~A~clvMTTEILRnMlyrg~~~-~~~i~~ViFDEvHyi~D---~eRG~VWEE---~Ii~ 256 (1041)
T COG4581 195 LMTGDVS-----------INPDAPCLVMTTEILRNMLYRGSES-LRDIEWVVFDEVHYIGD---RERGVVWEE---VIIL 256 (1041)
T ss_pred ceeccee-----------eCCCCceEEeeHHHHHHHhccCccc-ccccceEEEEeeeeccc---cccchhHHH---HHHh
Confidence 2222211 2346889999999999988777544 78999999999999987 455554444 3445
Q ss_pred hcccceeEeeecccChhHHHHHHHHhc---CCccceeeccccCCCeeEEEEecC-------Cccc---hh----hh----
Q 036378 349 RLNVECILAMTATATTTTLRDVMSALE---IPLSNLIQKAQLRDNLQLSVSLSG-------NNRQ---NE----RS---- 407 (815)
Q Consensus 349 ~~~~~~vl~lSAT~~~~~~~~i~~~l~---~~~~~~~~~~~~~~~l~~~v~~~~-------~~~~---~~----~~---- 407 (815)
.+...++++||||.+.... +..|+. -....++.....+.++.+.+.... ...+ .. ..
T Consensus 257 lP~~v~~v~LSATv~N~~E--F~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~ 334 (1041)
T COG4581 257 LPDHVRFVFLSATVPNAEE--FAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSC 334 (1041)
T ss_pred cCCCCcEEEEeCCCCCHHH--HHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhc
Confidence 5667799999999887643 555553 334445555555555555443321 0000 00 00
Q ss_pred ------------------------------hhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhC------------
Q 036378 408 ------------------------------AYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDN------------ 445 (815)
Q Consensus 408 ------------------------------~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~------------ 445 (815)
...-.+...+...+..++++|+-+++.|+..+..+...
T Consensus 335 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i 414 (1041)
T COG4581 335 FSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAI 414 (1041)
T ss_pred cchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHH
Confidence 00011223334445678999999999998888766521
Q ss_pred ----------------CC-------------cEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEE-
Q 036378 446 ----------------SI-------------SVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI- 495 (815)
Q Consensus 446 ----------------g~-------------~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI- 495 (815)
++ .+.++|+||=+..|..+...|..|-++|++||.+|++|||.|.-.+|+
T Consensus 415 ~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~ 494 (1041)
T COG4581 415 REIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFT 494 (1041)
T ss_pred HHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeee
Confidence 11 345899999999999999999999999999999999999999544443
Q ss_pred ---EeC----CCCCHHHHHHHHcccCCCCCC--ceEEEEec
Q 036378 496 ---HYS----LPESLEEYVQEIGRAGRDGRL--SYCHLFLD 527 (815)
Q Consensus 496 ---~~d----~P~s~~~y~Qr~GRaGR~g~~--g~~i~l~~ 527 (815)
++| ...+..+|+|..|||||.|.. |.+++...
T Consensus 495 ~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 495 SLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred eeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 232 233889999999999999986 77777743
No 98
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=3.3e-24 Score=236.55 Aligned_cols=320 Identities=17% Similarity=0.177 Sum_probs=228.0
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCCh
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRP 276 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~ 276 (815)
.+-|+|..||.-+-+++++|+.|-|.+|||.++-.++ +....++|+.+|.++|.+|-+++|.. +-..+.+.+..+.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTI 208 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTI 208 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceee
Confidence 4679999999999999999999999999998855443 33477899999999999999999987 4444444443321
Q ss_pred HHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeE
Q 036378 277 EEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECIL 356 (815)
Q Consensus 277 ~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl 356 (815)
+..+..||+|.|.|.+.+.+..-- +..+..||+||+|-|-+-. |.-... .-+--.+...+.+
T Consensus 209 -----------nP~ASCLVMTTEILRsMLYRGSEv-mrEVaWVIFDEIHYMRDkE---RGVVWE---ETIIllP~~vr~V 270 (1041)
T KOG0948|consen 209 -----------NPDASCLVMTTEILRSMLYRGSEV-MREVAWVIFDEIHYMRDKE---RGVVWE---ETIILLPDNVRFV 270 (1041)
T ss_pred -----------CCCCceeeeHHHHHHHHHhccchH-hheeeeEEeeeehhccccc---cceeee---eeEEeccccceEE
Confidence 225789999999999988776655 7789999999999986521 111111 1111345667899
Q ss_pred eeecccChhHHHHHHHHh---cCCccceeeccccCCCeeEEEEecC---------Cc---cchhhhh-------------
Q 036378 357 AMTATATTTTLRDVMSAL---EIPLSNLIQKAQLRDNLQLSVSLSG---------NN---RQNERSA------------- 408 (815)
Q Consensus 357 ~lSAT~~~~~~~~i~~~l---~~~~~~~~~~~~~~~~l~~~v~~~~---------~~---~~~~~~~------------- 408 (815)
+||||.+.... +.+|. .-...+++-+.+.+.+++..+.... .+ .+.+-..
T Consensus 271 FLSATiPNA~q--FAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 271 FLSATIPNARQ--FAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEeccCCCHHH--HHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 99999987643 44443 4445556556666666665543311 11 0000000
Q ss_pred ---------------------hHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhC----------------------
Q 036378 409 ---------------------YVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDN---------------------- 445 (815)
Q Consensus 409 ---------------------~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~---------------------- 445 (815)
-+-++....-..+..|++||+-++++||.+|-.+.+.
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 1112333333445678999999999999999776542
Q ss_pred -----------------CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE----eCCCC---
Q 036378 446 -----------------SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH----YSLPE--- 501 (815)
Q Consensus 446 -----------------g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~----~d~P~--- 501 (815)
.-++.++|+|+-+--++-|.-.|.+|-++||+||..|++|+|.|.-++|+- ||--.
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRw 508 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRW 508 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceee
Confidence 125678999999999999999999999999999999999999996555542 22111
Q ss_pred -CHHHHHHHHcccCCCCCC--ceEEEEeccc-cHHHHHHhhhc
Q 036378 502 -SLEEYVQEIGRAGRDGRL--SYCHLFLDDI-TYFRLRSLMYS 540 (815)
Q Consensus 502 -s~~~y~Qr~GRaGR~g~~--g~~i~l~~~~-d~~~l~~~~~~ 540 (815)
|--+|+|+.|||||.|.. |.|+++++.. +....+.++.+
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG 551 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKG 551 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcC
Confidence 667999999999999875 8899998765 55556666543
No 99
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=3.9e-24 Score=233.51 Aligned_cols=302 Identities=17% Similarity=0.165 Sum_probs=209.2
Q ss_pred HHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc------CCcEEEEcccHHHHHHHHHhcCCC--ce-eeeeccCCC
Q 036378 205 GQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL------PGLTLVVCPLVALMIDQLRHLPPV--IH-GGFLSSSQR 275 (815)
Q Consensus 205 ~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~------~~~~lVl~P~~~L~~q~~~~l~~~--~~-~~~i~~~~~ 275 (815)
.+.+.+..|..++-+++++.||||||. |+|-++. .+.+-+..|.|..|..+..++..- .. +..+....
T Consensus 360 ~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsI- 436 (1042)
T KOG0924|consen 360 CRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSI- 436 (1042)
T ss_pred HHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEE-
Confidence 455666677778999999999999998 6665433 678889999999999888887751 11 11111111
Q ss_pred hHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhccccee
Q 036378 276 PEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECI 355 (815)
Q Consensus 276 ~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~v 355 (815)
.++.+......|-|+|.+.|+........ +.+++.||+||||.-+- ...-..-+++..+. ...+..+
T Consensus 437 ------RFEdvT~~~T~IkymTDGiLLrEsL~d~~--L~kYSviImDEAHERsl----NtDilfGllk~~la-rRrdlKl 503 (1042)
T KOG0924|consen 437 ------RFEDVTSEDTKIKYMTDGILLRESLKDRD--LDKYSVIIMDEAHERSL----NTDILFGLLKKVLA-RRRDLKL 503 (1042)
T ss_pred ------EeeecCCCceeEEEeccchHHHHHhhhhh--hhheeEEEechhhhccc----chHHHHHHHHHHHH-hhccceE
Confidence 12233334689999999999987666544 66899999999998752 11222233333333 3446689
Q ss_pred EeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHH
Q 036378 356 LAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFET 435 (815)
Q Consensus 356 l~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~ 435 (815)
|.+|||+.... +..+++.-....+....++-.+.+.-..+.+..+ ..+.....+......+.++||...++.+
T Consensus 504 iVtSATm~a~k---f~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVe----aavkq~v~Ihl~~~~GdilIfmtGqedi 576 (1042)
T KOG0924|consen 504 IVTSATMDAQK---FSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVE----AAVKQAVQIHLSGPPGDILIFMTGQEDI 576 (1042)
T ss_pred EEeeccccHHH---HHHHhCCCceeeecCCccceEEEeccCchHHHHH----HHHhhheEeeccCCCCCEEEecCCCcch
Confidence 99999997654 5566663333333343343333333222222221 1122111222223447789998888776
Q ss_pred HHHHHHHhh----------CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCC------
Q 036378 436 DLISRYLCD----------NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSL------ 499 (815)
Q Consensus 436 e~l~~~L~~----------~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~------ 499 (815)
+-.+..+.. .++.+..+++.|+.+-+.++++.-..|..++|||||+++..+.+|++++||..+.
T Consensus 577 E~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvy 656 (1042)
T KOG0924|consen 577 ECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVY 656 (1042)
T ss_pred hHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeec
Confidence 665555543 2688999999999999999999999999999999999999999999999997553
Q ss_pred ------------CCCHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 500 ------------PESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 500 ------------P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
|-|-.+--||+|||||.| +|.||-+|+...
T Consensus 657 n~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~a 698 (1042)
T KOG0924|consen 657 NPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDA 698 (1042)
T ss_pred ccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhH
Confidence 557788899999999997 999999998753
No 100
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=3.9e-22 Score=231.77 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=108.8
Q ss_pred ccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCC---CHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---C
Q 036378 168 SELELVEEAVRAVRDEASDENLGRLLRLVYGYDSF---RDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---P 241 (815)
Q Consensus 168 ~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~---~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~ 241 (815)
+.+++.+++.+.+... + -...||..| ||+|.++|+.++.++++++.|+||+|||++|.+|++.. +
T Consensus 65 eafal~re~~~r~lg~-------~--~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGT-------P--VEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG 135 (970)
T ss_pred HHhCCCHHHHHHHhcc-------c--cccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc
Confidence 4555666665555520 0 001589988 99999999999999999999999999999999999854 4
Q ss_pred CcEEEEcccHHHHHHHHHhcCC-----CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhh-hchhhhhhhh----
Q 036378 242 GLTLVVCPLVALMIDQLRHLPP-----VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF-LNADFLSIFT---- 311 (815)
Q Consensus 242 ~~~lVl~P~~~L~~q~~~~l~~-----~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L-~~~~~~~~~~---- 311 (815)
..++||+|+++||.|..+.+.. ++....+.+++...+.... . .++|+|+||++| .+.+..+.+.
T Consensus 136 ~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~---y---~~DIVygTPgRLgfDyLrd~~~~~~~~ 209 (970)
T PRK12899 136 KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI---Y---QCDVVYGTASEFGFDYLRDNSIATRKE 209 (970)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH---c---CCCEEEECCChhHHHHhhCCCCCcCHH
Confidence 5699999999999998888875 2445556566655544322 2 489999999999 7665444222
Q ss_pred --hcCcccEEEEeccccccc
Q 036378 312 --ATSLISLVVVDEAHCVSE 329 (815)
Q Consensus 312 --~~~~i~~lViDEaH~i~~ 329 (815)
....+.++||||||.|+-
T Consensus 210 ~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 210 EQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HhhcccccEEEEechhhhhh
Confidence 023568999999999853
No 101
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.90 E-value=1.5e-22 Score=206.08 Aligned_cols=184 Identities=18% Similarity=0.207 Sum_probs=142.0
Q ss_pred cccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc------
Q 036378 167 ASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL------ 240 (815)
Q Consensus 167 ~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~------ 240 (815)
|+++++++.+.+.+.+ +|+..|+++|.++++.+++|+++++++|||+|||++|++|++..
T Consensus 1 ~~~~~~~~~i~~~l~~--------------~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~ 66 (203)
T cd00268 1 FEELGLSPELLRGIYA--------------LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK 66 (203)
T ss_pred CCcCCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc
Confidence 5678888888888888 79999999999999999999999999999999999999998732
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhc
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~ 313 (815)
+++++|++|+++|+.|+...+... +....+.+.....+... .+ .++++|+|+||++|.......... +
T Consensus 67 ~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~iiv~T~~~l~~~l~~~~~~-~ 141 (203)
T cd00268 67 KDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIR---KL-KRGPHIVVATPGRLLDLLERGKLD-L 141 (203)
T ss_pred cCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---Hh-cCCCCEEEEChHHHHHHHHcCCCC-h
Confidence 457999999999999998877653 23334444444333222 22 246899999999998866555433 6
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhc
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
.+++++||||+|.+.++ +|...+..+ ........+++++|||+++.+...+...+.
T Consensus 142 ~~l~~lIvDE~h~~~~~--~~~~~~~~~----~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~ 197 (203)
T cd00268 142 SKVKYLVLDEADRMLDM--GFEDQIREI----LKLLPKDRQTLLFSATMPKEVRDLARKFLR 197 (203)
T ss_pred hhCCEEEEeChHHhhcc--ChHHHHHHH----HHhCCcccEEEEEeccCCHHHHHHHHHHCC
Confidence 78999999999999854 555555554 334445789999999999887666666554
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.89 E-value=6.1e-22 Score=202.24 Aligned_cols=302 Identities=17% Similarity=0.170 Sum_probs=199.0
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCChhHHHH-HHHH--HHHcCCcEEEEcccHHHHHHHHHhcCCCceeeeecc
Q 036378 200 DSFRDGQLEAIKMVL----DKKSTMLVLPTGAGKSLC-YQIP--AMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSS 272 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il----~g~d~li~apTGsGKTl~-~~lp--~l~~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~ 272 (815)
.+++|+|+.|-..++ +.+++|+.|-||+|||.. |+.- ++..|+.+.+.+|....+.+.+.+|+..+....+..
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~ 175 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDL 175 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeee
Confidence 379999998776655 577999999999999953 4432 456799999999999999999999998544332222
Q ss_pred CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhccc
Q 036378 273 SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNV 352 (815)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~ 352 (815)
.....+ .. ....++|+|...|+.. ...++++||||+|-+- |..+-.-. .++-..+...
T Consensus 176 Lyg~S~--~~------fr~plvVaTtHQLlrF--------k~aFD~liIDEVDAFP-----~~~d~~L~-~Av~~ark~~ 233 (441)
T COG4098 176 LYGDSD--SY------FRAPLVVATTHQLLRF--------KQAFDLLIIDEVDAFP-----FSDDQSLQ-YAVKKARKKE 233 (441)
T ss_pred EecCCc--hh------ccccEEEEehHHHHHH--------HhhccEEEEecccccc-----ccCCHHHH-HHHHHhhccc
Confidence 211111 11 1368999999888654 3468999999999773 33222111 2334455556
Q ss_pred ceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEE-EEecCCccchh-hhhhHHHHHHHH--hhccccceEEE
Q 036378 353 ECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLS-VSLSGNNRQNE-RSAYVDEVFSFH--RSSKHYYILQI 428 (815)
Q Consensus 353 ~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-v~~~~~~~~~~-~~~~~~~l~~l~--~~~~~~~~ivf 428 (815)
..+|.||||++.+...++...-.. ...+...+-+.++... ..-..+..+.. +...-.++...+ +...+.++++|
T Consensus 234 g~~IylTATp~k~l~r~~~~g~~~--~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 234 GATIYLTATPTKKLERKILKGNLR--ILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred CceEEEecCChHHHHHHhhhCCee--EeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 679999999998877666542210 0111112222222211 11111111111 111111222222 33456899999
Q ss_pred ecchHHHHHHHHHHhhC-C-CcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE-eCCC-CCHH
Q 036378 429 SGKHFETDLISRYLCDN-S-ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH-YSLP-ESLE 504 (815)
Q Consensus 429 ~~s~~~~e~l~~~L~~~-g-~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~-~d~P-~s~~ 504 (815)
+++....+.+++.|+.. + ..+...|+. +..|.+..++|++|++++||+|.+++||+.+|+|+++|. ..-+ .+-+
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 99999999999999553 3 345677875 357889999999999999999999999999999999554 3322 3778
Q ss_pred HHHHHHcccCCCCCC--ceEEEEec
Q 036378 505 EYVQEIGRAGRDGRL--SYCHLFLD 527 (815)
Q Consensus 505 ~y~Qr~GRaGR~g~~--g~~i~l~~ 527 (815)
..+|.+||+||.-.. |..+.|-.
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEec
Confidence 999999999997443 55555543
No 103
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.89 E-value=3e-21 Score=231.95 Aligned_cols=316 Identities=19% Similarity=0.191 Sum_probs=212.0
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCChhHHHHHHHHH--HHc----CCcEEEEcccHHHHHHHHHhcCCCceeeee
Q 036378 201 SFRDGQLEAIKMVL----DKKSTMLVLPTGAGKSLCYQIPA--MIL----PGLTLVVCPLVALMIDQLRHLPPVIHGGFL 270 (815)
Q Consensus 201 ~~~~~Q~~ai~~il----~g~d~li~apTGsGKTl~~~lp~--l~~----~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i 270 (815)
.++|+|.+++..++ .|.+.|+.-.+|.|||+..+..+ +.. .+.+|||||. +|+.+|.+++.++.+...+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999999876 47789999999999998654332 211 4678999997 7778899999886543222
Q ss_pred ccCC-ChHHHHHHH-HHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHH
Q 036378 271 SSSQ-RPEEVAETI-RLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRA 348 (815)
Q Consensus 271 ~~~~-~~~~~~~~~-~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~ 348 (815)
.... ...+..... ..+..+.++|+|+|.+.+... ...+. -..+++|||||||++-.. ..... ..++.
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e--~~~L~-k~~W~~VIvDEAHrIKN~----~Skls----kalr~ 316 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKE--KTALK-RFSWRYIIIDEAHRIKNE----NSLLS----KTMRL 316 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHH--HHHhc-cCCCCEEEEcCccccCCH----HHHHH----HHHHH
Confidence 1111 222222222 223456789999999998654 22222 236899999999999632 11112 22222
Q ss_pred hcccceeEeeecccChhHHHHHHHHhcCCccceeec----------------------------------------cccC
Q 036378 349 RLNVECILAMTATATTTTLRDVMSALEIPLSNLIQK----------------------------------------AQLR 388 (815)
Q Consensus 349 ~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------------------------------------~~~~ 388 (815)
. .....++|||||......++...+.+-.+..+.. ..++
T Consensus 317 L-~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 F-STNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred h-hcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 2 2345689999999888777777665433221110 0011
Q ss_pred CCeeEEEEecCCccchh------------------h--------------------------------------hhhHHH
Q 036378 389 DNLQLSVSLSGNNRQNE------------------R--------------------------------------SAYVDE 412 (815)
Q Consensus 389 ~~l~~~v~~~~~~~~~~------------------~--------------------------------------~~~~~~ 412 (815)
+.....+...-...... . ...+..
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 11111111110000000 0 000111
Q ss_pred HHHHHhhc--cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC---CceEEEEccccccccc
Q 036378 413 VFSFHRSS--KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN---KIRVVVATVAFGMGLD 487 (815)
Q Consensus 413 l~~l~~~~--~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g---~~~VLVaT~~~~~GID 487 (815)
+..++..+ .+.+++||+......+.|.++|...|+....+||+++..+|..+++.|... ...+|++|.+.|.|||
T Consensus 476 LdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGIN 555 (1033)
T PLN03142 476 LDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGIN 555 (1033)
T ss_pred HHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCc
Confidence 11222211 356899999999999999999999999999999999999999999999763 3457899999999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEE--EEeccc
Q 036378 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCH--LFLDDI 529 (815)
Q Consensus 488 ~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i--~l~~~~ 529 (815)
+..+++||+||+++++..+.|++||+.|.|+...+. .|+...
T Consensus 556 Lt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 556 LATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred hhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 999999999999999999999999999999986554 444544
No 104
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=223.42 Aligned_cols=332 Identities=20% Similarity=0.222 Sum_probs=224.5
Q ss_pred HhcCCCCCCHHHHHHH--HHHHcCCCEEEEcCCChhHHHHHHHHHH----HcCCcEEEEcccHHHHHHHHHhcCCCc---
Q 036378 195 LVYGYDSFRDGQLEAI--KMVLDKKSTMLVLPTGAGKSLCYQIPAM----ILPGLTLVVCPLVALMIDQLRHLPPVI--- 265 (815)
Q Consensus 195 ~~~g~~~~~~~Q~~ai--~~il~g~d~li~apTGsGKTl~~~lp~l----~~~~~~lVl~P~~~L~~q~~~~l~~~~--- 265 (815)
...|..++..+|.+++ +.++.+++.|..+||+.|||++.-+-++ .....++.+.|..+.+......+..+.
T Consensus 217 ~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~ 296 (1008)
T KOG0950|consen 217 KDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDL 296 (1008)
T ss_pred HhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhcccc
Confidence 3368889999999987 5688999999999999999999888775 347889999999999998888887632
Q ss_pred --eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhh-hhcCcccEEEEeccccccccccCchHHHHHHH
Q 036378 266 --HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF-TATSLISLVVVDEAHCVSEWSHNFRPSYMRLR 342 (815)
Q Consensus 266 --~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~-~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~ 342 (815)
+.....+...+....+ ..++.|+|-|+-....-.-.- ..+..+++|||||.|.+.+-|.+.--.. ++
T Consensus 297 G~~ve~y~g~~~p~~~~k--------~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~--~l 366 (1008)
T KOG0950|consen 297 GFPVEEYAGRFPPEKRRK--------RESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILEL--LL 366 (1008)
T ss_pred CCcchhhcccCCCCCccc--------ceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHH--HH
Confidence 2222222222222111 468999999986543211100 1155799999999999998655443222 22
Q ss_pred HHHHH-HhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHH--------
Q 036378 343 ASLLR-ARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV-------- 413 (815)
Q Consensus 343 ~~~~~-~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l-------- 413 (815)
..++- ......|+++||||.+.. .++..+|... ++...+.+.++.-.+..........+...+..+
T Consensus 367 ~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~---~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~ 441 (1008)
T KOG0950|consen 367 AKILYENLETSVQIIGMSATIPNN--SLLQDWLDAF---VYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNL 441 (1008)
T ss_pred HHHHHhccccceeEeeeecccCCh--HHHHHHhhhh---heecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhc
Confidence 22222 223335799999998764 3466666522 222222222221111110000000000011111
Q ss_pred --------HHHH--hhccccceEEEecchHHHHHHHHHHhhC--------------------------------------
Q 036378 414 --------FSFH--RSSKHYYILQISGKHFETDLISRYLCDN-------------------------------------- 445 (815)
Q Consensus 414 --------~~l~--~~~~~~~~ivf~~s~~~~e~l~~~L~~~-------------------------------------- 445 (815)
..++ ...++..+++||.+++.|+.+|..+...
T Consensus 442 g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti 521 (1008)
T KOG0950|consen 442 GDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTI 521 (1008)
T ss_pred ccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheec
Confidence 1111 1123456999999999999988655431
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCC----CCCHHHHHHHHcccCCCCCC--
Q 036378 446 SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSL----PESLEEYVQEIGRAGRDGRL-- 519 (815)
Q Consensus 446 g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~----P~s~~~y~Qr~GRaGR~g~~-- 519 (815)
...+.++|+|++.++|+.+...|++|.+.|++||+.++.|++.|..|++|-+-+ ..+.-+|.|++|||||.|-.
T Consensus 522 ~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~ 601 (1008)
T KOG0950|consen 522 PYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTL 601 (1008)
T ss_pred cccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccC
Confidence 347899999999999999999999999999999999999999999999886432 23788999999999999764
Q ss_pred ceEEEEeccccHHHHHHhhhcC
Q 036378 520 SYCHLFLDDITYFRLRSLMYSD 541 (815)
Q Consensus 520 g~~i~l~~~~d~~~l~~~~~~~ 541 (815)
|.+++++.+.+....+.++...
T Consensus 602 GdsiLI~k~~e~~~~~~lv~~~ 623 (1008)
T KOG0950|consen 602 GDSILIIKSSEKKRVRELVNSP 623 (1008)
T ss_pred cceEEEeeccchhHHHHHHhcc
Confidence 9999999999988877776543
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=2.1e-21 Score=225.53 Aligned_cols=109 Identities=18% Similarity=0.150 Sum_probs=101.1
Q ss_pred cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCC----------
Q 036378 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD---------- 490 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~---------- 490 (815)
.+.+++|||++...++.++..|...|+.+..+|+.+...++..+.+.|+.|. |+||||++|||+|+.=
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~ 525 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEA 525 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhh
Confidence 5789999999999999999999999999999999999999999999999999 9999999999999861
Q ss_pred ---------------------------ccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccH
Q 036378 491 ---------------------------VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531 (815)
Q Consensus 491 ---------------------------v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~ 531 (815)
==+||--..+.|..-=-|-.|||||.|.||.+..|++-+|-
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 526 LENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred hcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 22688888999999999999999999999999999987763
No 106
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=6.3e-22 Score=216.35 Aligned_cols=305 Identities=18% Similarity=0.163 Sum_probs=214.0
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc------CC-cEEEEcccHHHHHHHHHhcCC--Cceee-eec
Q 036378 202 FRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL------PG-LTLVVCPLVALMIDQLRHLPP--VIHGG-FLS 271 (815)
Q Consensus 202 ~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~------~~-~~lVl~P~~~L~~q~~~~l~~--~~~~~-~i~ 271 (815)
-.++-.+.+.+|-.++.++|.|.||||||. |+|-++. ++ .+-+..|.|.-|..+..++.+ +++.+ .+.
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 345567788889999999999999999998 8887754 34 488999999999988888776 22211 111
Q ss_pred cCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHH-HHHHHHHHHHhc
Q 036378 272 SSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSY-MRLRASLLRARL 350 (815)
Q Consensus 272 ~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~-~~i~~~~~~~~~ 350 (815)
... .++.+...+.-|-|+|.+.|+..+..+.. +...++|||||||.-. ...++ ..++..+. ...
T Consensus 344 YsI-------RFEdcTSekTvlKYMTDGmLlREfL~epd--LasYSViiiDEAHERT-----L~TDILfgLvKDIa-r~R 408 (902)
T KOG0923|consen 344 YSI-------RFEDCTSEKTVLKYMTDGMLLREFLSEPD--LASYSVIIVDEAHERT-----LHTDILFGLVKDIA-RFR 408 (902)
T ss_pred eEE-------EeccccCcceeeeeecchhHHHHHhcccc--ccceeEEEeehhhhhh-----hhhhHHHHHHHHHH-hhC
Confidence 111 12333444678999999999987655543 7789999999999753 22232 23334433 344
Q ss_pred ccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEec
Q 036378 351 NVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISG 430 (815)
Q Consensus 351 ~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~ 430 (815)
+...+|..|||...+- +..+|+... ++..+..|-++....... ...+.....+..+..+......+.++||..
T Consensus 409 pdLKllIsSAT~DAek---FS~fFDdap--IF~iPGRRyPVdi~Yt~~--PEAdYldAai~tVlqIH~tqp~GDILVFlt 481 (902)
T KOG0923|consen 409 PDLKLLISSATMDAEK---FSAFFDDAP--IFRIPGRRYPVDIFYTKA--PEADYLDAAIVTVLQIHLTQPLGDILVFLT 481 (902)
T ss_pred CcceEEeeccccCHHH---HHHhccCCc--EEeccCcccceeeecccC--CchhHHHHHHhhheeeEeccCCccEEEEec
Confidence 6778999999997765 444454332 333333333333322222 122112222222223333334578999999
Q ss_pred chHHHHHHHHHHhh---------CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCC--
Q 036378 431 KHFETDLISRYLCD---------NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSL-- 499 (815)
Q Consensus 431 s~~~~e~l~~~L~~---------~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~-- 499 (815)
.+++.+...+.|.. ..+-+.++|+.|+.+.+..|++---.|-.+|++|||+++..|.|++|.+||+-++
T Consensus 482 GQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K 561 (902)
T KOG0923|consen 482 GQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVK 561 (902)
T ss_pred cHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcccc
Confidence 99888887777764 2456889999999999999999999999999999999999999999999997443
Q ss_pred ----------------CCCHHHHHHHHcccCCCCCCceEEEEeccccH
Q 036378 500 ----------------PESLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531 (815)
Q Consensus 500 ----------------P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~ 531 (815)
|-|..+-.||+|||||.| +|.|+-||+.-.+
T Consensus 562 ~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY 608 (902)
T KOG0923|consen 562 QNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY 608 (902)
T ss_pred ccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh
Confidence 447778899999999998 9999999986443
No 107
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.1e-21 Score=218.04 Aligned_cols=307 Identities=18% Similarity=0.181 Sum_probs=209.7
Q ss_pred HHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----------CCcEEEEcccHHHHHHHHHhcCCCce--eeeeccCC
Q 036378 208 EAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-----------PGLTLVVCPLVALMIDQLRHLPPVIH--GGFLSSSQ 274 (815)
Q Consensus 208 ~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-----------~~~~lVl~P~~~L~~q~~~~l~~~~~--~~~i~~~~ 274 (815)
+++++|..+--+|++|.||||||. |+|-++. ++.+-|.-|.|.-+..+.++...-+. +..+....
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 577788888889999999999998 7887643 56788999999888777666554111 11111101
Q ss_pred ChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcc---
Q 036378 275 RPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLN--- 351 (815)
Q Consensus 275 ~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~--- 351 (815)
. ++.-......|.++|.|.|+..+..+.+ +..++.|||||||.-+-+..-.-.-..++ ..+..+...
T Consensus 341 R-------fd~ti~e~T~IkFMTDGVLLrEi~~Dfl--L~kYSvIIlDEAHERSvnTDILiGmLSRi-V~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 341 R-------FDGTIGEDTSIKFMTDGVLLREIENDFL--LTKYSVIILDEAHERSVNTDILIGMLSRI-VPLRQKYYKEQC 410 (1172)
T ss_pred E-------eccccCCCceeEEecchHHHHHHHHhHh--hhhceeEEechhhhccchHHHHHHHHHHH-HHHHHHHhhhhc
Confidence 0 1111123578999999999988766655 67899999999998763211111111122 222222222
Q ss_pred ---cceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEE
Q 036378 352 ---VECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQI 428 (815)
Q Consensus 352 ---~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf 428 (815)
+..+|.||||+.......-...|.++.+ ++.-....-++.+.+.. ....+.......+...+.+.+..+.++||
T Consensus 411 ~~kpLKLIIMSATLRVsDFtenk~LFpi~pP-likVdARQfPVsIHF~k--rT~~DYi~eAfrKtc~IH~kLP~G~ILVF 487 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLRVSDFTENKRLFPIPPP-LIKVDARQFPVSIHFNK--RTPDDYIAEAFRKTCKIHKKLPPGGILVF 487 (1172)
T ss_pred ccCceeEEEEeeeEEecccccCceecCCCCc-eeeeecccCceEEEecc--CCCchHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 4579999999877765555555666555 33222222222222211 11122233444555677778888999999
Q ss_pred ecchHHHHHHHHHHhhC---------------------------------------------------------------
Q 036378 429 SGKHFETDLISRYLCDN--------------------------------------------------------------- 445 (815)
Q Consensus 429 ~~s~~~~e~l~~~L~~~--------------------------------------------------------------- 445 (815)
+..+.+++.|++.|++.
T Consensus 488 vTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa 567 (1172)
T KOG0926|consen 488 VTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAA 567 (1172)
T ss_pred EeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhh
Confidence 99999999999998752
Q ss_pred ------------------------------------CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccC
Q 036378 446 ------------------------------------SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489 (815)
Q Consensus 446 ------------------------------------g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p 489 (815)
.+-|..+++-++.+.+.++++.--.|..-++||||+++..+.||
T Consensus 568 ~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIP 647 (1172)
T KOG0926|consen 568 FNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIP 647 (1172)
T ss_pred hhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccC
Confidence 12366777888889999999988899999999999999999999
Q ss_pred CccEEEEeCCC--------C----------CHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 490 DVGAVIHYSLP--------E----------SLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 490 ~v~~VI~~d~P--------~----------s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
+|++||+.+.- . |-.+--||+|||||.| +|+||-||+..-
T Consensus 648 gIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAV 705 (1172)
T KOG0926|consen 648 GIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAV 705 (1172)
T ss_pred CeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHH
Confidence 99999975432 2 3444489999999997 999999998653
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.86 E-value=8.3e-20 Score=213.54 Aligned_cols=116 Identities=23% Similarity=0.263 Sum_probs=108.0
Q ss_pred ccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeC-
Q 036378 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYS- 498 (815)
Q Consensus 420 ~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d- 498 (815)
.++.+++|||++++.++.+++.|.+.|+.+..+||++++.+|.++++.|+.|+++|||||+.+++|+|+|++++||++|
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Da 519 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA 519 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCc
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----CCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHH
Q 036378 499 ----LPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRS 536 (815)
Q Consensus 499 ----~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~ 536 (815)
.|.+.++|+||+|||||. ..|.|++|++..+....+.
T Consensus 520 difG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~a 560 (655)
T TIGR00631 520 DKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKA 560 (655)
T ss_pred ccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHH
Confidence 899999999999999998 6899999998876654443
No 109
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=4.7e-19 Score=208.88 Aligned_cols=113 Identities=26% Similarity=0.247 Sum_probs=104.9
Q ss_pred cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCC-
Q 036378 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSL- 499 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~- 499 (815)
.+.+++|||++++.++.+++.|...|+.+..+||+++..+|..+++.|+.|++.|+|||+.+++|+|+|++++||++|.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----CCCHHHHHHHHcccCCCCCCceEEEEeccccHHHH
Q 036378 500 ----PESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRL 534 (815)
Q Consensus 500 ----P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l 534 (815)
|.+.++|+||+||+||. ..|.|++|++..+....
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~ 562 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQ 562 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHH
Confidence 78999999999999996 78999999986544333
No 110
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.85 E-value=7.7e-21 Score=187.36 Aligned_cols=156 Identities=27% Similarity=0.398 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----CCcEEEEcccHHHHHHHHHhcCCCc-----eeeeecc
Q 036378 203 RDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-----PGLTLVVCPLVALMIDQLRHLPPVI-----HGGFLSS 272 (815)
Q Consensus 203 ~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-----~~~~lVl~P~~~L~~q~~~~l~~~~-----~~~~i~~ 272 (815)
||+|.++++.+.+|+++++.+|||+|||++|++|++.. ...++|++|+++|+.|+.+.+.... ....+..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999998743 2489999999999999999988732 3344444
Q ss_pred CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhccc
Q 036378 273 SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNV 352 (815)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~ 352 (815)
...... .....+ .++++|+|+||++|.......... +.++++|||||+|++..| .++..+..+... +.. ...
T Consensus 81 ~~~~~~--~~~~~~-~~~~~ilv~T~~~l~~~~~~~~~~-~~~~~~iViDE~h~l~~~--~~~~~~~~i~~~-~~~-~~~ 152 (169)
T PF00270_consen 81 GQSISE--DQREVL-SNQADILVTTPEQLLDLISNGKIN-ISRLSLIVIDEAHHLSDE--TFRAMLKSILRR-LKR-FKN 152 (169)
T ss_dssp TSCHHH--HHHHHH-HTTSSEEEEEHHHHHHHHHTTSST-GTTESEEEEETHHHHHHT--THHHHHHHHHHH-SHT-TTT
T ss_pred cccccc--cccccc-cccccccccCcchhhccccccccc-cccceeeccCcccccccc--cHHHHHHHHHHH-hcC-CCC
Confidence 444221 111222 456999999999998876654443 566999999999999987 677767666332 222 225
Q ss_pred ceeEeeecccChhHH
Q 036378 353 ECILAMTATATTTTL 367 (815)
Q Consensus 353 ~~vl~lSAT~~~~~~ 367 (815)
.+++++|||++ ...
T Consensus 153 ~~~i~~SAT~~-~~~ 166 (169)
T PF00270_consen 153 IQIILLSATLP-SNV 166 (169)
T ss_dssp SEEEEEESSST-HHH
T ss_pred CcEEEEeeCCC-hhH
Confidence 78999999999 443
No 111
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.83 E-value=5.6e-20 Score=214.62 Aligned_cols=316 Identities=18% Similarity=0.132 Sum_probs=211.4
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc--------CCcEEEEcccHHHHHHHHHhcCCCceeeeeccC
Q 036378 202 FRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--------PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSS 273 (815)
Q Consensus 202 ~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--------~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~ 273 (815)
....+++++.++.+++.+++.|.||+|||. |+|.+.. ...+++..|.|--|..+.+++..-. +..+...
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER-~~~~g~~ 250 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKER-GESLGEE 250 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHh-ccccCCe
Confidence 345688889999999999999999999998 6675533 4568999999888888777776511 0000000
Q ss_pred CChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccc
Q 036378 274 QRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVE 353 (815)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~ 353 (815)
.+.. ..++.....+..+++||.+.|++.+... ..+..+.+||+||+|.-+. ..+++-+..+.+-...+..
T Consensus 251 VGYq---vrl~~~~s~~t~L~fcTtGvLLr~L~~~--~~l~~vthiivDEVHER~i-----~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 251 VGYQ---VRLESKRSRETRLLFCTTGVLLRRLQSD--PTLSGVTHIIVDEVHERSI-----NTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred eeEE---EeeecccCCceeEEEecHHHHHHHhccC--cccccCceeeeeeEEEccC-----CcccHHHHHHHHhhhCCCc
Confidence 0000 0111112224789999999999876553 3377999999999998853 3344444444444555788
Q ss_pred eeEeeecccChhHHHHHHHHhcCCccceeecc-------ccCCCe-----------eEEEEecC--------Cccchhhh
Q 036378 354 CILAMTATATTTTLRDVMSALEIPLSNLIQKA-------QLRDNL-----------QLSVSLSG--------NNRQNERS 407 (815)
Q Consensus 354 ~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-------~~~~~l-----------~~~v~~~~--------~~~~~~~~ 407 (815)
++|+||||...+.. ..+++......+... ++.+-+ .+.+.... ........
T Consensus 321 kvILMSAT~dae~f---s~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 397 (924)
T KOG0920|consen 321 KVILMSATLDAELF---SDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDY 397 (924)
T ss_pred eEEEeeeecchHHH---HHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccH
Confidence 99999999986554 344432211111100 000000 00000000 00000111
Q ss_pred hhH-HHHHHHHhhccccceEEEecchHHHHHHHHHHhhC-------CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEc
Q 036378 408 AYV-DEVFSFHRSSKHYYILQISGKHFETDLISRYLCDN-------SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479 (815)
Q Consensus 408 ~~~-~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~-------g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT 479 (815)
..+ ..+..+.+....+.++||.....+...+.+.|... .+-+..+|+.|+..++..++..-..|..+||+||
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaT 477 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILAT 477 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhh
Confidence 111 22233344445678999999999999999999642 3678899999999999999999999999999999
Q ss_pred cccccccccCCccEEEEeC--------CCC----------CHHHHHHHHcccCCCCCCceEEEEeccccHHHH
Q 036378 480 VAFGMGLDKRDVGAVIHYS--------LPE----------SLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRL 534 (815)
Q Consensus 480 ~~~~~GID~p~v~~VI~~d--------~P~----------s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l 534 (815)
++++.+|.|+||-+||+.+ .-. |..+-.||.|||||. ++|.||.+|+...+..+
T Consensus 478 NIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~ 549 (924)
T KOG0920|consen 478 NIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKL 549 (924)
T ss_pred hhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhc
Confidence 9999999999999999644 322 555669999999999 79999999998766543
No 112
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.83 E-value=7.7e-19 Score=201.57 Aligned_cols=291 Identities=18% Similarity=0.259 Sum_probs=206.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHHHHHHHHHhcCCCc
Q 036378 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVALMIDQLRHLPPVI 265 (815)
Q Consensus 189 l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~L~~q~~~~l~~~~ 265 (815)
..+..++..|+ .|...|+--...++.|+++-++||||.|||.--++.++ ..++++++|+||..|+.|.++.+.++.
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 45667777788 89999999999999999999999999999976555544 347899999999999999999998732
Q ss_pred e------e-eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEecccccccccc------
Q 036378 266 H------G-GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSH------ 332 (815)
Q Consensus 266 ~------~-~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~------ 332 (815)
. . ...++.+...+....++++.+|+.+|+|+|..-|... +.. +. -.++++|+||.+|-++.-+.
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~-~e~-L~-~~kFdfifVDDVDA~LkaskNvDriL 226 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKR-FEE-LS-KLKFDFIFVDDVDAILKASKNVDRLL 226 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhh-HHH-hc-ccCCCEEEEccHHHHHhccccHHHHH
Confidence 1 1 1256777888999999999999999999998766443 111 11 12689999999998765321
Q ss_pred ---CchHHH-------HHHH------------HHHHH--------HhcccceeEeeecccChhH--HHHHHHHhcCCccc
Q 036378 333 ---NFRPSY-------MRLR------------ASLLR--------ARLNVECILAMTATATTTT--LRDVMSALEIPLSN 380 (815)
Q Consensus 333 ---~fr~~~-------~~i~------------~~~~~--------~~~~~~~vl~lSAT~~~~~--~~~i~~~l~~~~~~ 380 (815)
+|.... ..+. ...++ ......++++.|||..+.- ...+.+.|++....
T Consensus 227 ~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~ 306 (1187)
T COG1110 227 RLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGS 306 (1187)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCc
Confidence 122110 0000 00010 1223458999999988754 23344555654332
Q ss_pred eeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecc---hHHHHHHHHHHhhCCCcEEEecCCCC
Q 036378 381 LIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK---HFETDLISRYLCDNSISVKSYHSGIP 457 (815)
Q Consensus 381 ~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s---~~~~e~l~~~L~~~g~~v~~~h~~~~ 457 (815)
- ...+|.-+...+. . ....++..+++.+.. .++||+.. ++.+++++++|+..|+++..+|+.
T Consensus 307 ~--~~~LRNIvD~y~~-~---------~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-- 371 (1187)
T COG1110 307 G--GEGLRNIVDIYVE-S---------ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-- 371 (1187)
T ss_pred c--chhhhheeeeecc-C---------ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc--
Confidence 1 1122222222222 1 112233345555544 78999999 899999999999999999999983
Q ss_pred HHHHHHHHHHHhcCCceEEEEcc----ccccccccCC-ccEEEEeCCCC
Q 036378 458 AKDRSRIQELFCSNKIRVVVATV----AFGMGLDKRD-VGAVIHYSLPE 501 (815)
Q Consensus 458 ~~~R~~i~~~F~~g~~~VLVaT~----~~~~GID~p~-v~~VI~~d~P~ 501 (815)
+.+.++.|..|+++|||+.. ++.||||.|. ++++|.++.|+
T Consensus 372 ---~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 ---KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred ---chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 37789999999999999864 6899999996 89999999995
No 113
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.83 E-value=1.8e-19 Score=215.33 Aligned_cols=318 Identities=20% Similarity=0.144 Sum_probs=203.6
Q ss_pred CCHHHHHHHHHHHcC---C-CEEEEcCCChhHHHHHHHHHHHc-------CCcEEEEcccHHHHHHHHHhcCCCceeeee
Q 036378 202 FRDGQLEAIKMVLDK---K-STMLVLPTGAGKSLCYQIPAMIL-------PGLTLVVCPLVALMIDQLRHLPPVIHGGFL 270 (815)
Q Consensus 202 ~~~~Q~~ai~~il~g---~-d~li~apTGsGKTl~~~lp~l~~-------~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i 270 (815)
.++.|..++..++.. . .+++.||||+|||++.+.+++.. ..+++.+.|++++.+++++++........+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 378899999988863 3 67899999999999999988632 578999999999999999999973222111
Q ss_pred -----ccCCChHHHHHH----------HHHHhcCCceEEEeChhhhhchhhh----hhhhhcCcccEEEEeccccccccc
Q 036378 271 -----SSSQRPEEVAET----------IRLIQVGAIKVLFVSPERFLNADFL----SIFTATSLISLVVVDEAHCVSEWS 331 (815)
Q Consensus 271 -----~~~~~~~~~~~~----------~~~l~~g~~~Ili~TPe~L~~~~~~----~~~~~~~~i~~lViDEaH~i~~~g 331 (815)
++.....-.... .+.....-..+.++||-.+...... ..+. .-..+++|+||+|.+.+..
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLA-LLLTSLVILDEVHLYADET 354 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHH-HHHhhchhhccHHhhcccc
Confidence 111110000000 0111112244566666665542111 0011 1246899999999887531
Q ss_pred cCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccC--CCeeEEEEecCCccchhhhhh
Q 036378 332 HNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLR--DNLQLSVSLSGNNRQNERSAY 409 (815)
Q Consensus 332 ~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~--~~l~~~v~~~~~~~~~~~~~~ 409 (815)
. ...+...+......+.++|+||||+++...+.+...+.............. ...........+.... .. .
T Consensus 355 --~---~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~-~ 427 (733)
T COG1203 355 --M---LAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDG-PQ-E 427 (733)
T ss_pred --h---HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhh-hh-H
Confidence 1 122212222233346689999999999988888877755433332211110 0001100000000000 00 0
Q ss_pred HHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHh----cCCceEEEEccccccc
Q 036378 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFC----SNKIRVVVATVAFGMG 485 (815)
Q Consensus 410 ~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~----~g~~~VLVaT~~~~~G 485 (815)
............+.+++++|||...|.++++.|+..+..+..+||.+...+|.+.++.+. .+...|+|||++.+.|
T Consensus 428 ~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEag 507 (733)
T COG1203 428 ELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507 (733)
T ss_pred hhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEE
Confidence 000112234446788999999999999999999998889999999999999988777544 5788999999999999
Q ss_pred cccCCccEEEEeCCCCCHHHHHHHHcccCCCC--CCceEEEEecccc
Q 036378 486 LDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG--RLSYCHLFLDDIT 530 (815)
Q Consensus 486 ID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g--~~g~~i~l~~~~d 530 (815)
+|+. .+++|- =+..+.+.+||+||++|.| ..|..+++.....
T Consensus 508 vDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 508 VDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred eccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeecccC
Confidence 9986 666553 3456789999999999999 5677777765543
No 114
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=2.4e-18 Score=200.89 Aligned_cols=121 Identities=21% Similarity=0.134 Sum_probs=106.8
Q ss_pred hHHHHHHHHhh--ccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccccccc
Q 036378 409 YVDEVFSFHRS--SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGL 486 (815)
Q Consensus 409 ~~~~l~~l~~~--~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GI 486 (815)
+...+...+.. ..+.+++|||+|+..++.|++.|...|+.+..+|+ .+.+|+..+..|+.+...|+||||++|||+
T Consensus 583 K~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGt 660 (1025)
T PRK12900 583 KYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGT 660 (1025)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCC
Confidence 33444444432 36789999999999999999999999999999997 678999999999999999999999999999
Q ss_pred ccC---CccE-----EEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccH
Q 036378 487 DKR---DVGA-----VIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531 (815)
Q Consensus 487 D~p---~v~~-----VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~ 531 (815)
|++ .|.. ||+++.|.|...|.|++||+||.|.+|.++.|++.+|.
T Consensus 661 DIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 661 DIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999 5643 59999999999999999999999999999999998774
No 115
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=4.9e-17 Score=185.20 Aligned_cols=321 Identities=18% Similarity=0.129 Sum_probs=207.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+..++.+|. .+.+.|.-+.-.++.|+ ++.|.||.|||++..+|++.. +..+.|++|+--||.+-++.+..
T Consensus 68 REa~~R~lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~ 144 (764)
T PRK12326 68 REAAERTLGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYE 144 (764)
T ss_pred HHHHHHHcCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 4556666774 57788888888887764 789999999999999998754 88899999999999998888776
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh------hcCcccEEEEecccccccc-----
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT------ATSLISLVVVDEAHCVSEW----- 330 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~------~~~~i~~lViDEaH~i~~~----- 330 (815)
++..+.+...+...+....+ .++|+|+|..-|.-...++.+. ....+.+.||||+|.++--
T Consensus 145 ~LGLsvg~i~~~~~~~err~aY------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtP 218 (764)
T PRK12326 145 ALGLTVGWITEESTPEERRAAY------ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVP 218 (764)
T ss_pred hcCCEEEEECCCCCHHHHHHHH------cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCc
Confidence 35667777777766655544 4899999998764322222221 1356889999999987420
Q ss_pred ----ccCc-hHHHHHHHHHHHHHhccc-----------------------------------------------------
Q 036378 331 ----SHNF-RPSYMRLRASLLRARLNV----------------------------------------------------- 352 (815)
Q Consensus 331 ----g~~f-r~~~~~i~~~~~~~~~~~----------------------------------------------------- 352 (815)
|..- ...|..+ ..+.+.....
T Consensus 219 LiISg~~~~~~~y~~~-~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l 297 (764)
T PRK12326 219 LVLAGSTPGEAPRGEI-AELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHAL 297 (764)
T ss_pred eeeeCCCcchhHHHHH-HHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHH
Confidence 0000 0111111 1111111000
Q ss_pred -----------------------------------------------------------------ceeEeeecccChhHH
Q 036378 353 -----------------------------------------------------------------ECILAMTATATTTTL 367 (815)
Q Consensus 353 -----------------------------------------------------------------~~vl~lSAT~~~~~~ 367 (815)
..+.+||+|+..+ .
T Consensus 298 ~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~-~ 376 (764)
T PRK12326 298 LQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAA-G 376 (764)
T ss_pred HhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhH-H
Confidence 1234455554322 2
Q ss_pred HHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHH-HHHh-hccccceEEEecchHHHHHHHHHHhhC
Q 036378 368 RDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVF-SFHR-SSKHYYILQISGKHFETDLISRYLCDN 445 (815)
Q Consensus 368 ~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~-~l~~-~~~~~~~ivf~~s~~~~e~l~~~L~~~ 445 (815)
..+.+..+++ ++.-+..++..... ..+........+...+. .+.+ ...+.|++|.+.+....+.+++.|.+.
T Consensus 377 ~Ef~~iY~l~---Vv~IPtnkp~~R~d---~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~ 450 (764)
T PRK12326 377 EQLRQFYDLG---VSVIPPNKPNIRED---EADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA 450 (764)
T ss_pred HHHHHHhCCc---EEECCCCCCceeec---CCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 2233333332 11122222222111 11111111112222222 2222 236789999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhcC-CceEEEEccccccccccC---------------CccEEEEeCCCCCHHHHHHH
Q 036378 446 SISVKSYHSGIPAKDRSRIQELFCSN-KIRVVVATVAFGMGLDKR---------------DVGAVIHYSLPESLEEYVQE 509 (815)
Q Consensus 446 g~~v~~~h~~~~~~~R~~i~~~F~~g-~~~VLVaT~~~~~GID~p---------------~v~~VI~~d~P~s~~~y~Qr 509 (815)
|++...+++.-...|-.-|-+ .| .-.|.|||+++|||-|+. +==+||-...+.|..---|-
T Consensus 451 gI~h~vLNAk~~~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QL 527 (764)
T PRK12326 451 GVPAVVLNAKNDAEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQL 527 (764)
T ss_pred CCcceeeccCchHhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHH
Confidence 999999999855444333333 33 335999999999999986 22369999999999999999
Q ss_pred HcccCCCCCCceEEEEecccc
Q 036378 510 IGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 510 ~GRaGR~g~~g~~i~l~~~~d 530 (815)
.||+||.|.+|.+..|++-+|
T Consensus 528 rGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 528 RGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred hcccccCCCCCceeEEEEcch
Confidence 999999999999999998766
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.77 E-value=2.2e-17 Score=195.44 Aligned_cols=314 Identities=14% Similarity=0.120 Sum_probs=189.1
Q ss_pred hhHHHHHHHHHhcCCC---------CCCHHHHHHHHHHHc----------CCCEEEEcCCChhHHHHHHHHHHH-----c
Q 036378 185 SDENLGRLLRLVYGYD---------SFRDGQLEAIKMVLD----------KKSTMLVLPTGAGKSLCYQIPAMI-----L 240 (815)
Q Consensus 185 ~~~~l~~~l~~~~g~~---------~~~~~Q~~ai~~il~----------g~d~li~apTGsGKTl~~~lp~l~-----~ 240 (815)
....+.++++.+.=|. -+++.|..||..+.. .+..+++++||||||++.+..+.. .
T Consensus 213 ~~~~ll~~i~~~~~~~~~~~~~~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~ 292 (667)
T TIGR00348 213 KKERLLDFIRNFIIFDKDTGLVTKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLK 292 (667)
T ss_pred CHHHHHHHHHheEEEECCCCceeeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcC
Confidence 3456666666543221 278889999988642 247899999999999887655432 2
Q ss_pred CCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcC--c-cc
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS--L-IS 317 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~--~-i~ 317 (815)
..++|||+|+.+|..|+.+.+....... .....+..+. ...+......|+|+|...|...... ....+. . -.
T Consensus 293 ~~~vl~lvdR~~L~~Q~~~~f~~~~~~~-~~~~~s~~~L---~~~l~~~~~~iivtTiQk~~~~~~~-~~~~~~~~~~~~ 367 (667)
T TIGR00348 293 NPKVFFVVDRRELDYQLMKEFQSLQKDC-AERIESIAEL---KRLLEKDDGGIIITTIQKFDKKLKE-EEEKFPVDRKEV 367 (667)
T ss_pred CCeEEEEECcHHHHHHHHHHHHhhCCCC-CcccCCHHHH---HHHHhCCCCCEEEEEhHHhhhhHhh-hhhccCCCCCCE
Confidence 5689999999999999999998853211 1111122222 2334445578999999999753211 111111 1 12
Q ss_pred EEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcC----Cccc-----eeeccccC
Q 036378 318 LVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEI----PLSN-----LIQKAQLR 388 (815)
Q Consensus 318 ~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~----~~~~-----~~~~~~~~ 388 (815)
+||+||||+.. . +.+. ..++...+....++|||||...........++. .... .+..+ ..
T Consensus 368 lvIvDEaHrs~-~-----~~~~----~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG-~~ 436 (667)
T TIGR00348 368 VVIFDEAHRSQ-Y-----GELA----KNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDG-LT 436 (667)
T ss_pred EEEEEcCcccc-c-----hHHH----HHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcC-Ce
Confidence 89999999863 1 1233 234455667789999999965321111122221 1000 01111 11
Q ss_pred CCeeEEEEecCCcc-----c---------------hh----hhh-------------hHHH-----HHHHHhh--ccccc
Q 036378 389 DNLQLSVSLSGNNR-----Q---------------NE----RSA-------------YVDE-----VFSFHRS--SKHYY 424 (815)
Q Consensus 389 ~~l~~~v~~~~~~~-----~---------------~~----~~~-------------~~~~-----l~~l~~~--~~~~~ 424 (815)
.++.|......... . .. ... .+.. +...... ....+
T Consensus 437 ~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~k 516 (667)
T TIGR00348 437 VKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFK 516 (667)
T ss_pred eeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCc
Confidence 11222111110000 0 00 000 0000 0111111 12478
Q ss_pred eEEEecchHHHHHHHHHHhhC-----CCcEEEecCCCCHH---------------------HHHHHHHHHhc-CCceEEE
Q 036378 425 ILQISGKHFETDLISRYLCDN-----SISVKSYHSGIPAK---------------------DRSRIQELFCS-NKIRVVV 477 (815)
Q Consensus 425 ~ivf~~s~~~~e~l~~~L~~~-----g~~v~~~h~~~~~~---------------------~R~~i~~~F~~-g~~~VLV 477 (815)
.+++|.++..|..+++.|.+. +..+..+++....+ ....++++|++ +..+|||
T Consensus 517 amvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilI 596 (667)
T TIGR00348 517 AMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLI 596 (667)
T ss_pred eeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEE
Confidence 899999999999999888654 34566777654432 22478889976 6889999
Q ss_pred EccccccccccCCccEEEEeCCCCCHHHHHHHHcccCC
Q 036378 478 ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGR 515 (815)
Q Consensus 478 aT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR 515 (815)
+++++..|+|.|.+.+++..-.-.+. .++|.+||+-|
T Consensus 597 VvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR 633 (667)
T TIGR00348 597 VVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNR 633 (667)
T ss_pred EEcccccccCCCccceEEEecccccc-HHHHHHHHhcc
Confidence 99999999999999998887766654 58999999999
No 117
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.77 E-value=7.3e-17 Score=196.93 Aligned_cols=173 Identities=15% Similarity=0.176 Sum_probs=109.9
Q ss_pred ceeEeeecccChh-HHHHHHHHhcCCcccee---ecccc-CCCeeEEEEecCC-ccchhhhhhH----HHHHHHHhhccc
Q 036378 353 ECILAMTATATTT-TLRDVMSALEIPLSNLI---QKAQL-RDNLQLSVSLSGN-NRQNERSAYV----DEVFSFHRSSKH 422 (815)
Q Consensus 353 ~~vl~lSAT~~~~-~~~~i~~~l~~~~~~~~---~~~~~-~~~l~~~v~~~~~-~~~~~~~~~~----~~l~~l~~~~~~ 422 (815)
..++++|||++.. ....+.+.++++..... ..++. ..+..+.+..... ........+. ..+..+... ..
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cC
Confidence 4678999999854 35567777887643322 12222 2333332221111 1111112222 233333333 34
Q ss_pred cceEEEecchHHHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccE--EEE
Q 036378 423 YYILQISGKHFETDLISRYLCD----NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA--VIH 496 (815)
Q Consensus 423 ~~~ivf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~--VI~ 496 (815)
++++||+++.+..+.+++.|.. .++. .+..+.. ..|.+++++|++++..||+||+.|.+|||+|+... ||.
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 6899999999999999999975 2333 3334443 57899999999999999999999999999998774 777
Q ss_pred eCCCCC------------------------------HHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 497 YSLPES------------------------------LEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 497 ~d~P~s------------------------------~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
..+|.. +..+.|.+||.=|.....-++++++..
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 777641 122389999999987654455555543
No 118
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.76 E-value=7.9e-18 Score=191.17 Aligned_cols=156 Identities=20% Similarity=0.203 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHH--HHHHHHHc---CCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCC
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLC--YQIPAMIL---PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQR 275 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~--~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~ 275 (815)
.|-.+|.+.+..+-.+++.+++|||.+|||.+ |.+-...+ .+.+|.+.|+.+|+.|....+...........+.+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 45679999999999999999999999999965 22223332 68899999999999998777665332112222211
Q ss_pred h-HHHHHHHHHHhcCCceEEEeChhhhhchhhhh--hhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhccc
Q 036378 276 P-EEVAETIRLIQVGAIKVLFVSPERFLNADFLS--IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNV 352 (815)
Q Consensus 276 ~-~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~--~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~ 352 (815)
. +......+ +.--+|+|+|+-||.+...+... ......+++++|+||+|++.. +..+.... .++. .-.
T Consensus 591 l~g~ltqEYs-inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~----~ed~l~~E--qll~--li~ 661 (1330)
T KOG0949|consen 591 LLGDLTQEYS-INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGN----EEDGLLWE--QLLL--LIP 661 (1330)
T ss_pred hHhhhhHHhc-CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccc----cccchHHH--HHHH--hcC
Confidence 1 11111111 11126999999999998766552 222256899999999999974 33333222 1221 223
Q ss_pred ceeEeeecccChh
Q 036378 353 ECILAMTATATTT 365 (815)
Q Consensus 353 ~~vl~lSAT~~~~ 365 (815)
.++|++|||..+.
T Consensus 662 CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 662 CPFLVLSATIGNP 674 (1330)
T ss_pred CCeeEEecccCCH
Confidence 4799999998764
No 119
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=1.3e-17 Score=179.28 Aligned_cols=332 Identities=15% Similarity=0.109 Sum_probs=225.5
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----CCcEEEEcccHHHHHHHHHhcCCC------c
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-----PGLTLVVCPLVALMIDQLRHLPPV------I 265 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-----~~~~lVl~P~~~L~~q~~~~l~~~------~ 265 (815)
+-.+.+..+|.++|..+-+|++.++.-.|.+||++||++.+... ....+++.|+.++++++.+.+.-. .
T Consensus 282 ~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~ 361 (1034)
T KOG4150|consen 282 NTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKAR 361 (1034)
T ss_pred ccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhh
Confidence 45678999999999999999999999999999999999887533 456899999999999887665431 2
Q ss_pred eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh---hcCcccEEEEeccccccccccCchHHHHHHH
Q 036378 266 HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT---ATSLISLVVVDEAHCVSEWSHNFRPSYMRLR 342 (815)
Q Consensus 266 ~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~---~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~ 342 (815)
+.+.+... .+........+..-+.++++..|.........+... .+-...++++||+|...- -|..-....+
T Consensus 362 K~A~V~~~--D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~~~~~~~~~ 436 (1034)
T KOG4150|consen 362 KSAYVEMS--DKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF---PTKALAQDQL 436 (1034)
T ss_pred hcceeecc--cCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec---chhhHHHHHH
Confidence 22332222 222222233344446899999998876544333222 022467889999998752 1221111111
Q ss_pred HHHHHH-----hcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCC---ccchhhhhhHHHHH
Q 036378 343 ASLLRA-----RLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGN---NRQNERSAYVDEVF 414 (815)
Q Consensus 343 ~~~~~~-----~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~---~~~~~~~~~~~~l~ 414 (815)
.++++. ...+.+++-.+||....+. ...+.+++.....+.....+..-.+.|.-... ..+..+..++....
T Consensus 437 R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~-~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s 515 (1034)
T KOG4150|consen 437 RALSDLIKGFEASINMGVYDGDTPYKDRTR-LRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVS 515 (1034)
T ss_pred HHHHHHHHHHHhhcCcceEeCCCCcCCHHH-HHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHH
Confidence 222221 1224578888888876654 34555666655555444333333333322211 11122333343333
Q ss_pred HHHh--hccccceEEEecchHHHHHHHHHHhh----CCC----cEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccccc
Q 036378 415 SFHR--SSKHYYILQISGKHFETDLISRYLCD----NSI----SVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484 (815)
Q Consensus 415 ~l~~--~~~~~~~ivf~~s~~~~e~l~~~L~~----~g~----~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~ 484 (815)
.++. .+.+-+++.||..|+-|+.+-...++ .+- .+..|.||...++|.+|..+.-.|+..-+|||++++-
T Consensus 516 ~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALEL 595 (1034)
T KOG4150|consen 516 HLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALEL 595 (1034)
T ss_pred HHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhh
Confidence 3322 23567899999999999987765554 221 3668999999999999999999999999999999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEec--cccHHHH
Q 036378 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD--DITYFRL 534 (815)
Q Consensus 485 GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~--~~d~~~l 534 (815)
|||+...+.|++.++|.|+.++.|..|||||..+++.++.+.. +-|...+
T Consensus 596 GIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 596 GIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred ccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhh
Confidence 9999999999999999999999999999999999988776654 4454443
No 120
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.75 E-value=7.2e-17 Score=188.41 Aligned_cols=295 Identities=13% Similarity=0.056 Sum_probs=195.1
Q ss_pred CChhHHHHHHHHH---HHcCCcEEEEcccHHHHHHHHHhcCCCc---eeeeeccCCChHHHHHHHHHHhcCCceEEEeCh
Q 036378 225 TGAGKSLCYQIPA---MILPGLTLVVCPLVALMIDQLRHLPPVI---HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298 (815)
Q Consensus 225 TGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~q~~~~l~~~~---~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TP 298 (815)
+|||||.+|+-.+ +..++.+||++|.++|..|..+.|++.+ ....+++.++..++...+..+..|+.+|+|||.
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 5999999998765 5668899999999999999999999733 467899999999999999999999999999999
Q ss_pred hhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC-
Q 036378 299 ERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP- 377 (815)
Q Consensus 299 e~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~- 377 (815)
..+... +.++++|||||-|.-+ |..+-.|.|+..-..+.+....+.++|+.|||++.+....+.......
T Consensus 249 SAvFaP--------~~~LgLIIvdEEhd~s-ykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~~g~~~~~ 319 (665)
T PRK14873 249 SAVFAP--------VEDLGLVAIWDDGDDL-LAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVESGWAHDL 319 (665)
T ss_pred eeEEec--------cCCCCEEEEEcCCchh-hcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHhcCcceee
Confidence 888766 7899999999999765 223334556655556777778888999999999999876554321110
Q ss_pred --ccceeeccccCCCeeEEEEecC-Cccch--h-hhhh-HHHHHHHHhhccccceEEEecch------------------
Q 036378 378 --LSNLIQKAQLRDNLQLSVSLSG-NNRQN--E-RSAY-VDEVFSFHRSSKHYYILQISGKH------------------ 432 (815)
Q Consensus 378 --~~~~~~~~~~~~~l~~~v~~~~-~~~~~--~-~~~~-~~~l~~l~~~~~~~~~ivf~~s~------------------ 432 (815)
...... ...+.+.+ +.... ....+ . ...+ ...+..+.+.++.+++++|.|.+
T Consensus 320 ~~~~~~~~--~~~P~v~~-vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~Cg~~~~C~ 396 (665)
T PRK14873 320 VAPRPVVR--ARAPRVRA-LGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLACARCRTPARCR 396 (665)
T ss_pred cccccccc--CCCCeEEE-EeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhhCcCeeECC
Confidence 000000 01111111 11111 00000 0 0001 11222333444444888886665
Q ss_pred -----------------------------------------HHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC
Q 036378 433 -----------------------------------------FETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471 (815)
Q Consensus 433 -----------------------------------------~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g 471 (815)
-.++.+++.|.+..-.+.++..+ ++.+++.|. +
T Consensus 397 ~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d-----~d~~l~~~~-~ 470 (665)
T PRK14873 397 HCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG-----GDQVVDTVD-A 470 (665)
T ss_pred CCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC-----hHHHHHhhc-c
Confidence 34577777777654333333322 234788886 5
Q ss_pred CceEEEEccccccccccCCccEEEEeCC------CC------CHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhh
Q 036378 472 KIRVVVATVAFGMGLDKRDVGAVIHYSL------PE------SLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539 (815)
Q Consensus 472 ~~~VLVaT~~~~~GID~p~v~~VI~~d~------P~------s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~ 539 (815)
+.+|||+|..+..=+. +++..|+..|. |. ...-+.|-+||+||.+.+|.+++..+++. ..++.+..
T Consensus 471 ~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~~-~~~~~l~~ 548 (665)
T PRK14873 471 GPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESSL-PTVQALIR 548 (665)
T ss_pred CCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCC-HHHHHHHh
Confidence 9999999994332222 46777765553 32 34445899999999999999999875544 45555543
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.9e-16 Score=184.81 Aligned_cols=321 Identities=17% Similarity=0.121 Sum_probs=199.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+.-++.+| ++|+=.+.|-.+.-.+--|+.|.||.|||+++.+|++. .+..|-|++|+--||.+.++.+..
T Consensus 72 rEa~~R~lG---m~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 72 REAGKRVMG---MRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred HHHHHHHhC---CCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 345566677 44444445656555677789999999999999999874 488899999999999998888876
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh------hcCcccEEEEeccccccc------
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT------ATSLISLVVVDEAHCVSE------ 329 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~------~~~~i~~lViDEaH~i~~------ 329 (815)
++..+.+...+...+....+ .++|+|+|..-|.-....+.+. ....+.++||||+|.++=
T Consensus 149 ~lGl~v~~i~~~~~~~err~~Y------~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtP 222 (913)
T PRK13103 149 FLGLSVGIVTPFQPPEEKRAAY------AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTP 222 (913)
T ss_pred ccCCEEEEECCCCCHHHHHHHh------cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCc
Confidence 35667777777777766555 3899999999862211111111 136899999999998741
Q ss_pred -----cccCchHHHHHHHHHHHHHhcc-------------------c---------------------------------
Q 036378 330 -----WSHNFRPSYMRLRASLLRARLN-------------------V--------------------------------- 352 (815)
Q Consensus 330 -----~g~~fr~~~~~i~~~~~~~~~~-------------------~--------------------------------- 352 (815)
-.......|..+ ..+.+.... .
T Consensus 223 LIISg~~~~~~~~y~~~-~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~ 301 (913)
T PRK13103 223 LIISGQAEDSSKLYIEI-NRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSA 301 (913)
T ss_pred eeecCCCccchHHHHHH-HHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccCh
Confidence 001111112211 111110000 0
Q ss_pred --------------------------------------------------------------------------------
Q 036378 353 -------------------------------------------------------------------------------- 352 (815)
Q Consensus 353 -------------------------------------------------------------------------------- 352 (815)
T Consensus 302 ~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (913)
T PRK13103 302 HNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYF 381 (913)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHH
Confidence
Q ss_pred ---ceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHH-HHHh-hccccceEE
Q 036378 353 ---ECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVF-SFHR-SSKHYYILQ 427 (815)
Q Consensus 353 ---~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~-~l~~-~~~~~~~iv 427 (815)
..+-+||+|+..+. ..+.+..+++ ++.-+..++.... ...+........+...+. .+.. ...+.|++|
T Consensus 382 r~Y~kLsGMTGTa~te~-~Ef~~iY~l~---Vv~IPTnkP~~R~---D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLV 454 (913)
T PRK13103 382 RLYNKLSGMTGTADTEA-FEFRQIYGLD---VVVIPPNKPLARK---DFNDLVYLTAEEKYAAIITDIKECMALGRPVLV 454 (913)
T ss_pred HhcchhccCCCCCHHHH-HHHHHHhCCC---EEECCCCCCcccc---cCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 11223333332211 1122222211 1111122221111 001111111111222222 2222 235789999
Q ss_pred EecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC-CceEEEEccccccccccC-----------------
Q 036378 428 ISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN-KIRVVVATVAFGMGLDKR----------------- 489 (815)
Q Consensus 428 f~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g-~~~VLVaT~~~~~GID~p----------------- 489 (815)
.+.+....+.|++.|...|+....+++.....|-.-|-+ .| .-.|.||||++|||-||.
T Consensus 455 GT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~ 531 (913)
T PRK13103 455 GTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQ---AGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTP 531 (913)
T ss_pred EeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHc---CCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhH
Confidence 999999999999999999999888888755444333332 34 345999999999999984
Q ss_pred --------------------CccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 490 --------------------DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 490 --------------------~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
+==+||--..+.|..-=-|-.|||||.|.+|.+..|++-+|
T Consensus 532 ~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 532 EQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 22268988999999999999999999999999999998766
No 122
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.73 E-value=4.3e-16 Score=168.17 Aligned_cols=109 Identities=26% Similarity=0.288 Sum_probs=100.7
Q ss_pred ccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCC
Q 036378 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSL 499 (815)
Q Consensus 420 ~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~ 499 (815)
..+.+++|-+-|++.+|.|.++|.+.|+++.++|++.+.-+|.+++.+++.|..+|||.-|.+-.|+|+|.|.+|..+|.
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDA 523 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA 523 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeec
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred -----CCCHHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 500 -----PESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 500 -----P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
.+|-.+.+|-+|||.|. -.|.++++.+.-
T Consensus 524 DKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 524 DKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred CccccccccchHHHHHHHHhhc-cCCeEEEEchhh
Confidence 45888999999999996 579999887653
No 123
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.72 E-value=6.4e-16 Score=172.49 Aligned_cols=318 Identities=19% Similarity=0.202 Sum_probs=217.1
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCChhHHHHHHHH---HHH---cCCcEEEEcccHHHHHHHHHhcCCCceeee
Q 036378 200 DSFRDGQLEAIKMVL----DKKSTMLVLPTGAGKSLCYQIP---AMI---LPGLTLVVCPLVALMIDQLRHLPPVIHGGF 269 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il----~g~d~li~apTGsGKTl~~~lp---~l~---~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~ 269 (815)
..++++|.+.+..+. +|-+.|+.-..|-|||+.-+.. +.. ..|.-||++|.-.| ..|..+++++.+...
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCcc
Confidence 479999999998876 4678999999999999743211 111 26889999999766 578888888655433
Q ss_pred eccCCC-hHHHHHHHHH-HhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHH
Q 036378 270 LSSSQR-PEEVAETIRL-IQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR 347 (815)
Q Consensus 270 i~~~~~-~~~~~~~~~~-l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~ 347 (815)
.....+ ..++....+. +..|..+|+|+|.|..+.. ...+. --+++++||||||++-.. .... ...++
T Consensus 245 ~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk-~~~W~ylvIDEaHRiKN~----~s~L----~~~lr 313 (971)
T KOG0385|consen 245 VVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLK-KFNWRYLVIDEAHRIKNE----KSKL----SKILR 313 (971)
T ss_pred eEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHh-cCCceEEEechhhhhcch----hhHH----HHHHH
Confidence 322222 2344444444 4456899999999988764 33444 237999999999999743 1111 23343
Q ss_pred HhcccceeEeeecccChhHHHHHHHHhcCCccceeecc----------------------------------------cc
Q 036378 348 ARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA----------------------------------------QL 387 (815)
Q Consensus 348 ~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----------------------------------------~~ 387 (815)
. +....-|++|+||-...+..+...|++-.+.++... .+
T Consensus 314 ~-f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 314 E-FKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred H-hcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 3 344457899999998887777766654333222110 01
Q ss_pred CCCeeEEEEecCCcc-----------------------chhhh-----------------------------------hh
Q 036378 388 RDNLQLSVSLSGNNR-----------------------QNERS-----------------------------------AY 409 (815)
Q Consensus 388 ~~~l~~~v~~~~~~~-----------------------~~~~~-----------------------------------~~ 409 (815)
++...+.+...-... +.... .+
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGK 472 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGK 472 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcc
Confidence 111111111100000 00000 00
Q ss_pred HHHHHHHHhhc--cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCC---ceEEEEcccccc
Q 036378 410 VDEVFSFHRSS--KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK---IRVVVATVAFGM 484 (815)
Q Consensus 410 ~~~l~~l~~~~--~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~---~~VLVaT~~~~~ 484 (815)
+..|..++..+ .+.++++|..-....+.|.++..-+++....+.|.++.++|...++.|.... .-.|++|-|.|-
T Consensus 473 m~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 473 MLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred eehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 01122333222 4678899988888899999999999999999999999999999999998743 457899999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceE--EEEecccc
Q 036378 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC--HLFLDDIT 530 (815)
Q Consensus 485 GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~--i~l~~~~d 530 (815)
|||....++||.||.-+++..=.|..-||.|-|+...+ +-|++...
T Consensus 553 GINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 553 GINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 99999999999999999999999999999999997654 45566654
No 124
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=1.1e-16 Score=170.23 Aligned_cols=296 Identities=19% Similarity=0.177 Sum_probs=195.9
Q ss_pred HHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH------HcCCcEEEEcccHHHHHHHHHhcCCCc---eeeeeccCCCh
Q 036378 206 QLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM------ILPGLTLVVCPLVALMIDQLRHLPPVI---HGGFLSSSQRP 276 (815)
Q Consensus 206 Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l------~~~~~~lVl~P~~~L~~q~~~~l~~~~---~~~~i~~~~~~ 276 (815)
+.+-+..+.+++-++++|.||||||. |+|-. .....+.+..|.+.-+.++..+...-. -+..+..+..
T Consensus 52 k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIr- 128 (699)
T KOG0925|consen 52 KEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIR- 128 (699)
T ss_pred HHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhcccccc-
Confidence 33445556678899999999999996 45532 235778899999999998888876521 1112222221
Q ss_pred HHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeE
Q 036378 277 EEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECIL 356 (815)
Q Consensus 277 ~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl 356 (815)
++++...+.-+-|+|.+.|+.....+.+ +.++++||+||||.-+- -......+++.+.+.+ +...++
T Consensus 129 ------fEdC~~~~T~Lky~tDgmLlrEams~p~--l~~y~viiLDeahERtl----ATDiLmGllk~v~~~r-pdLk~v 195 (699)
T KOG0925|consen 129 ------FEDCTSPNTLLKYCTDGMLLREAMSDPL--LGRYGVIILDEAHERTL----ATDILMGLLKEVVRNR-PDLKLV 195 (699)
T ss_pred ------ccccCChhHHHHHhcchHHHHHHhhCcc--cccccEEEechhhhhhH----HHHHHHHHHHHHHhhC-CCceEE
Confidence 1222222333456777777665444433 67899999999998641 2223344445555544 577899
Q ss_pred eeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHH
Q 036378 357 AMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETD 436 (815)
Q Consensus 357 ~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e 436 (815)
.||||+..... ..+++......+.. ..++ .+....+.........+..+..+......+.+++|....++.+
T Consensus 196 vmSatl~a~Kf---q~yf~n~Pll~vpg---~~Pv--Ei~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe 267 (699)
T KOG0925|consen 196 VMSATLDAEKF---QRYFGNAPLLAVPG---THPV--EIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIE 267 (699)
T ss_pred EeecccchHHH---HHHhCCCCeeecCC---CCce--EEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHH
Confidence 99999877654 34444332222211 2222 2234444444445555566666666666889999999999988
Q ss_pred HHHHHHhhC---------CCcEEEecCCCCHHHHHHHHHHHhc---C--CceEEEEccccccccccCCccEEEEeCC---
Q 036378 437 LISRYLCDN---------SISVKSYHSGIPAKDRSRIQELFCS---N--KIRVVVATVAFGMGLDKRDVGAVIHYSL--- 499 (815)
Q Consensus 437 ~l~~~L~~~---------g~~v~~~h~~~~~~~R~~i~~~F~~---g--~~~VLVaT~~~~~GID~p~v~~VI~~d~--- 499 (815)
..++.+... .+.+..+| +.++..+++-... | ..+|+|+|++++..+.+++|.+||+-++
T Consensus 268 ~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kq 343 (699)
T KOG0925|consen 268 DACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQ 343 (699)
T ss_pred HHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhh
Confidence 888887642 35678888 4444444443322 2 4589999999999999999999997553
Q ss_pred ---------------CCCHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 500 ---------------PESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 500 ---------------P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
|-|..+-.||+|||||. ++|.|+.+|+++-
T Consensus 344 kVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~ 388 (699)
T KOG0925|consen 344 KVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 388 (699)
T ss_pred cccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHh
Confidence 56888899999999998 7999999998763
No 125
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.69 E-value=5.9e-17 Score=138.03 Aligned_cols=78 Identities=44% Similarity=0.666 Sum_probs=75.9
Q ss_pred HHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCC
Q 036378 440 RYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDG 517 (815)
Q Consensus 440 ~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g 517 (815)
++|+..|+.+..+||+++..+|..+++.|.+++..|||||+++++|||+|++++||++++|++..+|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999987
No 126
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.68 E-value=5.5e-16 Score=176.19 Aligned_cols=297 Identities=15% Similarity=0.136 Sum_probs=181.7
Q ss_pred CCCCCCHHHHHHHHHHH----cCC-CEEEEcCCChhHHHHHHHHH--HHc---CCcEEEEcccHHHHHHHHHhcCCCcee
Q 036378 198 GYDSFRDGQLEAIKMVL----DKK-STMLVLPTGAGKSLCYQIPA--MIL---PGLTLVVCPLVALMIDQLRHLPPVIHG 267 (815)
Q Consensus 198 g~~~~~~~Q~~ai~~il----~g~-d~li~apTGsGKTl~~~lp~--l~~---~~~~lVl~P~~~L~~q~~~~l~~~~~~ 267 (815)
+-..+|.+|..||..+. +|+ .+|++|.||+|||-++...+ |.+ .+++|+|+-+.+|+.|.+..+..+.+.
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 44579999999998766 344 68999999999996543332 222 578999999999999999888875543
Q ss_pred eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhh--hhh--cCcccEEEEeccccccccccCchHHHHHHHH
Q 036378 268 GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI--FTA--TSLISLVVVDEAHCVSEWSHNFRPSYMRLRA 343 (815)
Q Consensus 268 ~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~--~~~--~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~ 343 (815)
........... ..+.++|.++|..++........ ... ...+++|||||||+-+ -..+..++.
T Consensus 242 ~~~~n~i~~~~--------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi------~~~~~~I~d 307 (875)
T COG4096 242 GTKMNKIEDKK--------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI------YSEWSSILD 307 (875)
T ss_pred ccceeeeeccc--------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH------HhhhHHHHH
Confidence 22211111110 11247999999999876544331 111 3358999999999843 112223322
Q ss_pred HHHHHhcccceeEeeecccChhHHHHHHHHh-cCCccc-----eeeccccCCCeeEEEEec-------------------
Q 036378 344 SLLRARLNVECILAMTATATTTTLRDVMSAL-EIPLSN-----LIQKAQLRDNLQLSVSLS------------------- 398 (815)
Q Consensus 344 ~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l-~~~~~~-----~~~~~~~~~~l~~~v~~~------------------- 398 (815)
-+- . . .+++||||......+-...+ +.|... -+...++-+.-.+.+...
T Consensus 308 YFd-A----~-~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g 381 (875)
T COG4096 308 YFD-A----A-TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQG 381 (875)
T ss_pred HHH-H----H-HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhc
Confidence 111 1 1 34559998875544444455 333210 011111111111111000
Q ss_pred -----CCcc----c--------hhhhhhHHHHHHHHhh--cc--ccceEEEecchHHHHHHHHHHhhC-----CCcEEEe
Q 036378 399 -----GNNR----Q--------NERSAYVDEVFSFHRS--SK--HYYILQISGKHFETDLISRYLCDN-----SISVKSY 452 (815)
Q Consensus 399 -----~~~~----~--------~~~~~~~~~l~~l~~~--~~--~~~~ivf~~s~~~~e~l~~~L~~~-----g~~v~~~ 452 (815)
++.. . .........+...+.. .. -.++||||.+..+++.+.+.|.+. |--+..+
T Consensus 382 ~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~I 461 (875)
T COG4096 382 EAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKI 461 (875)
T ss_pred cccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEE
Confidence 0000 0 0000111122222322 11 468999999999999999999874 2335566
Q ss_pred cCCCCHHHHHHHHHHHhc--CCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC
Q 036378 453 HSGIPAKDRSRIQELFCS--NKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD 516 (815)
Q Consensus 453 h~~~~~~~R~~i~~~F~~--g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~ 516 (815)
.++-.. -...++.|.. .-.+|.|+.+++..|||+|.|..+|.+-.-.|..-|.|++||+-|-
T Consensus 462 T~d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 462 TGDAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eccchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 665432 2334455554 3457889999999999999999999999999999999999999994
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.68 E-value=1.2e-14 Score=175.32 Aligned_cols=322 Identities=16% Similarity=0.100 Sum_probs=188.8
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCChhHHHHHHHHHHHc--CCcEEEEcccHHHHHHHH-HhcC---CC--ceee
Q 036378 201 SFRDGQLEAIKMVL----DKKSTMLVLPTGAGKSLCYQIPAMIL--PGLTLVVCPLVALMIDQL-RHLP---PV--IHGG 268 (815)
Q Consensus 201 ~~~~~Q~~ai~~il----~g~d~li~apTGsGKTl~~~lp~l~~--~~~~lVl~P~~~L~~q~~-~~l~---~~--~~~~ 268 (815)
++|+.|.+.+..+. .++.+++.|+||+|||++|++|++.. +.++||++||++|+.|.+ +.+. +. ++..
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~ 324 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQSDQRQIIVSVPTKILQDQIMAEEVKAIQEVFHIDCH 324 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 69999999555443 47788999999999999999999875 688999999999999985 3332 21 1111
Q ss_pred eeccCC-----------------C------------------hHHHH---------HHHHHH------------------
Q 036378 269 FLSSSQ-----------------R------------------PEEVA---------ETIRLI------------------ 286 (815)
Q Consensus 269 ~i~~~~-----------------~------------------~~~~~---------~~~~~l------------------ 286 (815)
.+.++. . .+++. ..+..+
T Consensus 325 ~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~~~~cf~ 404 (820)
T PRK07246 325 SLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLFYDYDFW 404 (820)
T ss_pred EEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCcchhhHH
Confidence 111000 0 00000 001111
Q ss_pred -----hcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHH------------------------
Q 036378 287 -----QVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPS------------------------ 337 (815)
Q Consensus 287 -----~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~------------------------ 337 (815)
+....+|||+...-|+....... .+...+++||||||.+.+-...+...
T Consensus 405 ~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 482 (820)
T PRK07246 405 KRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSGPLPLLQK 482 (820)
T ss_pred HHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHHHHHHHhh
Confidence 11246799999887776442221 25678999999999985421100000
Q ss_pred -----------------------------HHH---HH-----------HHHHHH-h------------------------
Q 036378 338 -----------------------------YMR---LR-----------ASLLRA-R------------------------ 349 (815)
Q Consensus 338 -----------------------------~~~---i~-----------~~~~~~-~------------------------ 349 (815)
+.. .+ ..++.. .
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~l~~~pl~ 562 (820)
T PRK07246 483 RLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTYLNSASKA 562 (820)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeEEEeeeCc
Confidence 000 00 000000 0
Q ss_pred --------cccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEe--cCCcc----chhhhhhHHHHHH
Q 036378 350 --------LNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSL--SGNNR----QNERSAYVDEVFS 415 (815)
Q Consensus 350 --------~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~--~~~~~----~~~~~~~~~~l~~ 415 (815)
.....+|++|||++..-..++.+.+++........++....-...+.. ..... ........+.+..
T Consensus 563 v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~ 642 (820)
T PRK07246 563 FTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEE 642 (820)
T ss_pred HHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHH
Confidence 011367899999973222236777777543322222221111111211 11111 1111122233333
Q ss_pred HHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCC--ccE
Q 036378 416 FHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD--VGA 493 (815)
Q Consensus 416 l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~--v~~ 493 (815)
+. ..+++++|+++|.+..+.+++.|......+ ...|.-. .+.+++++|++++..||++|..|..|||+|+ ...
T Consensus 643 ~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~ 717 (820)
T PRK07246 643 LK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMI 717 (820)
T ss_pred HH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEE
Confidence 33 346789999999999999999998665544 4445322 2566899999998899999999999999973 555
Q ss_pred EEEeCCCC------------------------------CHHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 494 VIHYSLPE------------------------------SLEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 494 VI~~d~P~------------------------------s~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
||...+|. -+-.+.|-+||.=|....--+++++++.
T Consensus 718 viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 718 EVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 67666663 1223489999999986543345555544
No 128
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.67 E-value=8.5e-16 Score=154.46 Aligned_cols=169 Identities=25% Similarity=0.326 Sum_probs=125.4
Q ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEcCCChhHHHHHHHHHHHc-----CCcEEEEcccHHHHHHHHHhcCCCce----
Q 036378 197 YGYDSFRDGQLEAIKMVLDK-KSTMLVLPTGAGKSLCYQIPAMIL-----PGLTLVVCPLVALMIDQLRHLPPVIH---- 266 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g-~d~li~apTGsGKTl~~~lp~l~~-----~~~~lVl~P~~~L~~q~~~~l~~~~~---- 266 (815)
+++..+++.|.+++..++.. +.+++.++||+|||.++..+++.. ...++|++|+.+++.|+...+.....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 57889999999999999999 999999999999999988887654 26799999999999999998887432
Q ss_pred -eeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHH
Q 036378 267 -GGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASL 345 (815)
Q Consensus 267 -~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~ 345 (815)
......+.. ....+..+..+..+++++|++.+.+........ ..+++++||||+|.+..+ .+...+..+
T Consensus 84 ~~~~~~~~~~---~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~-~~~~~~iIiDE~h~~~~~--~~~~~~~~~---- 153 (201)
T smart00487 84 KVVGLYGGDS---KREQLRKLESGKTDILVTTPGRLLDLLENDLLE-LSNVDLVILDEAHRLLDG--GFGDQLEKL---- 153 (201)
T ss_pred EEEEEeCCcc---hHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcC-HhHCCEEEEECHHHHhcC--CcHHHHHHH----
Confidence 122222222 133344455555699999999998765554333 557899999999999854 344444333
Q ss_pred HHHhcccceeEeeecccChhHHHHHHHHhc
Q 036378 346 LRARLNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 346 ~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
+....+..+++++|||++..........+.
T Consensus 154 ~~~~~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred HHhCCccceEEEEecCCchhHHHHHHHhcC
Confidence 444456778999999999777665555554
No 129
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=9.8e-15 Score=168.71 Aligned_cols=321 Identities=16% Similarity=0.118 Sum_probs=195.6
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcC---C
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLP---P 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~---~ 263 (815)
.+..++.+|. .+.+.|.-.--.+..| -|+.|.||-||||+..+|++.. +..|-||+..--||.--.+.+. .
T Consensus 68 REA~~R~lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~ 144 (925)
T PRK12903 68 REATKRVLGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFN 144 (925)
T ss_pred HHHHHHHhCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHH
Confidence 3456666775 4666676555444444 5899999999999999999753 6778888888889875444443 3
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh------hcCcccEEEEeccccccc------
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT------ATSLISLVVVDEAHCVSE------ 329 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~------~~~~i~~lViDEaH~i~~------ 329 (815)
++..+.+...+...+....+ .++|+|+|..-|.-...+..+. ..+.+.+.||||+|.++=
T Consensus 145 fLGLsvG~i~~~~~~~~rr~aY------~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTP 218 (925)
T PRK12903 145 FLGLSVGINKANMDPNLKREAY------ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTP 218 (925)
T ss_pred HhCCceeeeCCCCChHHHHHhc------cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCc
Confidence 45566666666666655544 4899999998764322222211 145789999999998742
Q ss_pred -----cccCchHHHHHHHHHHHHHhcc-------c---------------------------------------------
Q 036378 330 -----WSHNFRPSYMRLRASLLRARLN-------V--------------------------------------------- 352 (815)
Q Consensus 330 -----~g~~fr~~~~~i~~~~~~~~~~-------~--------------------------------------------- 352 (815)
-+.....-|..+ ..+.+.... .
T Consensus 219 LIISg~~~~~~~~Y~~~-~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf 297 (925)
T PRK12903 219 LIISGGQSNDSNLYLAA-DQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVM 297 (925)
T ss_pred ccccCCCccchHHHHHH-HHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHH
Confidence 001111223222 222221110 0
Q ss_pred ----------------------------------------------------------------ceeEeeecccChhHHH
Q 036378 353 ----------------------------------------------------------------ECILAMTATATTTTLR 368 (815)
Q Consensus 353 ----------------------------------------------------------------~~vl~lSAT~~~~~~~ 368 (815)
..+-+||+|+..+. .
T Consensus 298 ~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~-~ 376 (925)
T PRK12903 298 KEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEE-Q 376 (925)
T ss_pred hcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHH-H
Confidence 11222333322211 1
Q ss_pred HHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHH-HHHHhh-ccccceEEEecchHHHHHHHHHHhhCC
Q 036378 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEV-FSFHRS-SKHYYILQISGKHFETDLISRYLCDNS 446 (815)
Q Consensus 369 ~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l-~~l~~~-~~~~~~ivf~~s~~~~e~l~~~L~~~g 446 (815)
.+.+..++ .++.-+..++.... ...+........++..+ ..+.+. .++.|++|.|.+....+.|++.|.+.|
T Consensus 377 Ef~~iY~l---~Vv~IPTnkP~~R~---D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~g 450 (925)
T PRK12903 377 EFIDIYNM---RVNVVPTNKPVIRK---DEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEAN 450 (925)
T ss_pred HHHHHhCC---CEEECCCCCCeeee---eCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 11111111 11111222221111 11111111111112222 222222 367899999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhcC-CceEEEEccccccccccCCcc--------EEEEeCCCCCHHHHHHHHcccCCCC
Q 036378 447 ISVKSYHSGIPAKDRSRIQELFCSN-KIRVVVATVAFGMGLDKRDVG--------AVIHYSLPESLEEYVQEIGRAGRDG 517 (815)
Q Consensus 447 ~~v~~~h~~~~~~~R~~i~~~F~~g-~~~VLVaT~~~~~GID~p~v~--------~VI~~d~P~s~~~y~Qr~GRaGR~g 517 (815)
+....+++.-...|-.-|- ..| .-.|.|||+++|||.|+.--. +||....|.|..---|..||+||.|
T Consensus 451 i~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQG 527 (925)
T PRK12903 451 IPHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQG 527 (925)
T ss_pred CCceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCC
Confidence 9999999974433333222 345 456999999999999986322 8999999999988899999999999
Q ss_pred CCceEEEEecccc
Q 036378 518 RLSYCHLFLDDIT 530 (815)
Q Consensus 518 ~~g~~i~l~~~~d 530 (815)
.+|.+..|++-+|
T Consensus 528 DpGss~f~lSLeD 540 (925)
T PRK12903 528 DVGESRFFISLDD 540 (925)
T ss_pred CCCcceEEEecch
Confidence 9999999998765
No 130
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.66 E-value=8.3e-16 Score=144.37 Aligned_cols=105 Identities=31% Similarity=0.420 Sum_probs=101.1
Q ss_pred cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCC
Q 036378 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP 500 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P 500 (815)
...++++||++...++.+++.|.+.+..+..+||+++..+|..+++.|.++...||++|.++++|+|+|++++||+++.|
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~ 106 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLP 106 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHcccCCCCCCceEEEE
Q 036378 501 ESLEEYVQEIGRAGRDGRLSYCHLF 525 (815)
Q Consensus 501 ~s~~~y~Qr~GRaGR~g~~g~~i~l 525 (815)
++..+|.|++||+||.|+.|.|+++
T Consensus 107 ~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 107 WSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999988764
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.60 E-value=1.4e-13 Score=160.23 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=93.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+..++.+|.. +++.|.-+ .+.-.+.-|+.|.||.|||+++.+|++. .+..|-||+++..||..-.+.+..
T Consensus 66 rEa~~R~lG~r-~ydvQlig--~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~ 142 (870)
T CHL00122 66 REASFRTLGLR-HFDVQLIG--GLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYR 142 (870)
T ss_pred HHHHHHHhCCC-CCchHhhh--hHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHH
Confidence 35666677865 66667554 4444677899999999999999999964 378899999999999987776665
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh------hcCcccEEEEecccccc
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT------ATSLISLVVVDEAHCVS 328 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~------~~~~i~~lViDEaH~i~ 328 (815)
++..+.+...+...+..... .++|+|+|..-|.-...++.+. ....+.+.||||+|.++
T Consensus 143 ~LGLsvg~i~~~~~~~err~aY------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 143 FLGLTVGLIQEGMSSEERKKNY------LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HcCCceeeeCCCCChHHHHHhc------CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 45566666666666655544 4899999998664322222211 14578999999999874
No 132
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.59 E-value=5.7e-14 Score=164.29 Aligned_cols=318 Identities=18% Similarity=0.227 Sum_probs=217.2
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCChhHHH---HHHHHHH---HcCCcEEEEcccHHHHHHHHHhcCCC--cee
Q 036378 200 DSFRDGQLEAIKMVL----DKKSTMLVLPTGAGKSL---CYQIPAM---ILPGLTLVVCPLVALMIDQLRHLPPV--IHG 267 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il----~g~d~li~apTGsGKTl---~~~lp~l---~~~~~~lVl~P~~~L~~q~~~~l~~~--~~~ 267 (815)
..+|.+|.+.+..++ .++++|+.-..|-|||+ +|+--++ ...|..|||+|+-.+ ..|.+.|..+ ...
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHhhhce
Confidence 689999999998876 58899999999999994 4444443 346889999999554 4565666553 344
Q ss_pred eeeccCCChHHHHHHHHHHhcC-----CceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHH
Q 036378 268 GFLSSSQRPEEVAETIRLIQVG-----AIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR 342 (815)
Q Consensus 268 ~~i~~~~~~~~~~~~~~~l~~g-----~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~ 342 (815)
....+.....+...+.+....+ +++++++|.+.++.. ...+. --.+.+++|||||++-. .--..|.
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD--k~~L~-~i~w~~~~vDeahrLkN---~~~~l~~--- 518 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD--KAELS-KIPWRYLLVDEAHRLKN---DESKLYE--- 518 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc--Hhhhc-cCCcceeeecHHhhcCc---hHHHHHH---
Confidence 4555555555555555555555 588999999998653 22222 22689999999999963 1111121
Q ss_pred HHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeec------------------------------------cc
Q 036378 343 ASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQK------------------------------------AQ 386 (815)
Q Consensus 343 ~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~------------------------------------~~ 386 (815)
. +. .+....-|++|+||-.+.+..+...+++..+..+.. ..
T Consensus 519 -~-l~-~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks 595 (1373)
T KOG0384|consen 519 -S-LN-QFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS 595 (1373)
T ss_pred -H-HH-HhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC
Confidence 1 21 223334688999999988888877665433211100 00
Q ss_pred cCC--CeeEEEEecCCcc----------------------------------------------chhhh--------hhH
Q 036378 387 LRD--NLQLSVSLSGNNR----------------------------------------------QNERS--------AYV 410 (815)
Q Consensus 387 ~~~--~l~~~v~~~~~~~----------------------------------------------~~~~~--------~~~ 410 (815)
+++ .-.+.|....-.. ..... ..+
T Consensus 596 lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L 675 (1373)
T KOG0384|consen 596 LPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEAL 675 (1373)
T ss_pred CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHH
Confidence 000 0011111100000 00000 000
Q ss_pred H----------HHHHHHhhc--cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhc---CCceE
Q 036378 411 D----------EVFSFHRSS--KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS---NKIRV 475 (815)
Q Consensus 411 ~----------~l~~l~~~~--~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~---g~~~V 475 (815)
. .+..|+..+ .+++++||..-....+.|+++|...++..-.+.|.+..+-|+..++.|.. .....
T Consensus 676 ~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvF 755 (1373)
T KOG0384|consen 676 QALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVF 755 (1373)
T ss_pred HHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEE
Confidence 0 011222222 35799999999999999999999999999999999999999999999986 45678
Q ss_pred EEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCce--EEEEecccc
Q 036378 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSY--CHLFLDDIT 530 (815)
Q Consensus 476 LVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~--~i~l~~~~d 530 (815)
|+||-|.|-|||+..+++||.||.-+++.+=+|...||.|-|+... +|-|++...
T Consensus 756 LLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred EEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 9999999999999999999999999999999999999999999854 577787764
No 133
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.57 E-value=9.3e-13 Score=161.75 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=81.2
Q ss_pred cccceEEEecchHHHHHHHHHHhhCCC--cEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCc--cEEEE
Q 036378 421 KHYYILQISGKHFETDLISRYLCDNSI--SVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV--GAVIH 496 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~g~--~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v--~~VI~ 496 (815)
..++++|++++.+..+.+++.|..... ....+.-+++...|.+++++|++++-.||++|..|..|||+|+- +.||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 356899999999999999999976432 12233335554568999999999988999999999999999974 77888
Q ss_pred eCCCCC------------------------------HHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 497 YSLPES------------------------------LEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 497 ~d~P~s------------------------------~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
..+|.. +-.+.|-+||.=|....--++++++..
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 777641 122378889999987553355555543
No 134
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=1.7e-13 Score=154.21 Aligned_cols=318 Identities=15% Similarity=0.164 Sum_probs=207.8
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCChhHHH--HHHHHHHHc----CCcEEEEcccHHHHHHHHHhcCCCc---ee
Q 036378 201 SFRDGQLEAIKMVLD----KKSTMLVLPTGAGKSL--CYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVI---HG 267 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~----g~d~li~apTGsGKTl--~~~lp~l~~----~~~~lVl~P~~~L~~q~~~~l~~~~---~~ 267 (815)
.+.++|++.+..+.+ +.-.|+.-..|-|||+ +..+.++.. .+.+|||||. .++.||..+|..+. +.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEE
Confidence 567899999998764 5678999999999995 223444433 4789999998 78999999999843 34
Q ss_pred eeeccCCCh---------HHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHH
Q 036378 268 GFLSSSQRP---------EEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSY 338 (815)
Q Consensus 268 ~~i~~~~~~---------~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~ 338 (815)
..+++..+. ......+.....-.-.|+++|.+.+.-. ...+. -..++++|+||.|+|-.- .
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~-~~~W~y~ILDEGH~IrNp----n--- 353 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLL-GILWDYVILDEGHRIRNP----N--- 353 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--Ccccc-cccccEEEecCcccccCC----c---
Confidence 444444332 1112222222223357999998876432 11122 236899999999999642 1
Q ss_pred HHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccce--------------ee---------------------
Q 036378 339 MRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNL--------------IQ--------------------- 383 (815)
Q Consensus 339 ~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~--------------~~--------------------- 383 (815)
..+-.. .++ ....+.+.||+||..+.+..+...+.+-.+.. +.
T Consensus 354 s~isla-ckk-i~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 354 SKISLA-CKK-IRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred cHHHHH-HHh-ccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 122111 222 23445688999998877766665443211100 00
Q ss_pred ------------------ccc-----------------------------------cCCCeeEEE-----------EecC
Q 036378 384 ------------------KAQ-----------------------------------LRDNLQLSV-----------SLSG 399 (815)
Q Consensus 384 ------------------~~~-----------------------------------~~~~l~~~v-----------~~~~ 399 (815)
... ...+..+.+ ....
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 000 000000000 0000
Q ss_pred ---------Cc-cchhhhhhHHHHHHHHh--hccccceEEEecchHHHHHHHHHHh-hCCCcEEEecCCCCHHHHHHHHH
Q 036378 400 ---------NN-RQNERSAYVDEVFSFHR--SSKHYYILQISGKHFETDLISRYLC-DNSISVKSYHSGIPAKDRSRIQE 466 (815)
Q Consensus 400 ---------~~-~~~~~~~~~~~l~~l~~--~~~~~~~ivf~~s~~~~e~l~~~L~-~~g~~v~~~h~~~~~~~R~~i~~ 466 (815)
+. ......-.+..+..++. ...+.+++.|..++...+.|..+|. ..|+....+.|..+...|..+++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd 591 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVD 591 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHH
Confidence 00 00111222233333332 2346689999999999999999999 68999999999999999999999
Q ss_pred HHhcCCce--EEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceE--EEEeccccH
Q 036378 467 LFCSNKIR--VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC--HLFLDDITY 531 (815)
Q Consensus 467 ~F~~g~~~--VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~--i~l~~~~d~ 531 (815)
+|.+++.- .|++|.+.|-|+|+-.++-||.||+-+++.+=.|..-||-|.|+.-.+ |-|++...+
T Consensus 592 ~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 592 RFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred hhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 99987643 578999999999999999999999999999999999999999998554 455665543
No 135
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.56 E-value=3.4e-14 Score=165.61 Aligned_cols=340 Identities=16% Similarity=0.220 Sum_probs=221.0
Q ss_pred CCCCCHHHHHHHHHHHcC-CCEEEEcCCChhHHHHHHHHHHHc--CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCC
Q 036378 199 YDSFRDGQLEAIKMVLDK-KSTMLVLPTGAGKSLCYQIPAMIL--PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQ 274 (815)
Q Consensus 199 ~~~~~~~Q~~ai~~il~g-~d~li~apTGsGKTl~~~lp~l~~--~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~ 274 (815)
|..+.|+|.++++.+.+. .++++.+|+|||||.|.-++++.. .++++.+.|..+.+..++..+.+ +-++.......
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~ 1220 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVK 1220 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEe
Confidence 345599999999998865 478899999999999999888864 56899999999998877776665 21111111111
Q ss_pred ChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHH--HHHHHHhccc
Q 036378 275 RPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR--ASLLRARLNV 352 (815)
Q Consensus 275 ~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~--~~~~~~~~~~ 352 (815)
..++..-.+..+..| +|+|+||+++-.. + ....+++.|.||.|.++. .+-+.|.-++ ..+-....+.
T Consensus 1221 l~ge~s~~lkl~~~~--~vii~tpe~~d~l--q----~iQ~v~l~i~d~lh~igg---~~g~v~evi~S~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1221 LTGETSLDLKLLQKG--QVIISTPEQWDLL--Q----SIQQVDLFIVDELHLIGG---VYGAVYEVICSMRYIASQLEKK 1289 (1674)
T ss_pred cCCccccchHHhhhc--ceEEechhHHHHH--h----hhhhcceEeeehhhhhcc---cCCceEEEEeeHHHHHHHHHhh
Confidence 122222233444444 8999999998655 1 255799999999999973 1222221110 1122233445
Q ss_pred ceeEeeecccChhHHHHHHHHhcCCccceeeccc--cCCCeeEEEEecCCccchhhhh-hHH-HHHHH-HhhccccceEE
Q 036378 353 ECILAMTATATTTTLRDVMSALEIPLSNLIQKAQ--LRDNLQLSVSLSGNNRQNERSA-YVD-EVFSF-HRSSKHYYILQ 427 (815)
Q Consensus 353 ~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--~~~~l~~~v~~~~~~~~~~~~~-~~~-~l~~l-~~~~~~~~~iv 427 (815)
.+++++|...+.. ...++.....++.-.. ...++...+............. +.+ ....+ .....+.+.++
T Consensus 1290 ir~v~ls~~lana-----~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~v 1364 (1674)
T KOG0951|consen 1290 IRVVALSSSLANA-----RDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIV 1364 (1674)
T ss_pred eeEEEeehhhccc-----hhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEE
Confidence 6788888776542 2236655555554333 2334444444333322221111 111 11122 23346789999
Q ss_pred EecchHHHHHHHHHHhhC----------------------CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccc
Q 036378 428 ISGKHFETDLISRYLCDN----------------------SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMG 485 (815)
Q Consensus 428 f~~s~~~~e~l~~~L~~~----------------------g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~G 485 (815)
|+.+++.|..++..|-.. .+...+=|-+|+..+..-+..-|..|.++|+|...- .+|
T Consensus 1365 f~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~ 1443 (1674)
T KOG0951|consen 1365 FLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYG 1443 (1674)
T ss_pred EeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccc
Confidence 999999998877544320 112222299999999999999999999999998777 778
Q ss_pred cccCCccEEE----EeC------CCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhhcCCCCHHHHHHHHHHH
Q 036378 486 LDKRDVGAVI----HYS------LPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQV 555 (815)
Q Consensus 486 ID~p~v~~VI----~~d------~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~~~~~~~~~i~~~l~~~ 555 (815)
+-...--+|+ .|| .+-+..+..|++|+|.| .|.|+++....+...++++...-.+.+..++-.|...
T Consensus 1444 ~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~ 1520 (1674)
T KOG0951|consen 1444 TKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDN 1520 (1674)
T ss_pred ccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhh
Confidence 7654322233 122 45578899999999998 6789999999999999999877777777777777666
Q ss_pred hhc
Q 036378 556 FTN 558 (815)
Q Consensus 556 ~~~ 558 (815)
|++
T Consensus 1521 ~n~ 1523 (1674)
T KOG0951|consen 1521 FNA 1523 (1674)
T ss_pred hhH
Confidence 655
No 136
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.55 E-value=1.3e-14 Score=144.80 Aligned_cols=150 Identities=21% Similarity=0.224 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHHHc-------CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCC----ceee-
Q 036378 201 SFRDGQLEAIKMVLD-------KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV----IHGG- 268 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~-------g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~----~~~~- 268 (815)
+|+++|.+|+..+.+ ++.+++.+|||||||.+++..+......++|++|+..|+.|+.+.+..+ ....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 478999999999984 6899999999999999988666555449999999999999999999321 1100
Q ss_pred ----------eeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhh----------hhhhcCcccEEEEecccccc
Q 036378 269 ----------FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS----------IFTATSLISLVVVDEAHCVS 328 (815)
Q Consensus 269 ----------~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~----------~~~~~~~i~~lViDEaH~i~ 328 (815)
......... ...........++++.|...|....... ........++||+||||++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~ 159 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDI---SDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYP 159 (184)
T ss_dssp --GGGCCE-SEEETTTTEE---EHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTH
T ss_pred ccccccccccccccccccc---ccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcC
Confidence 000011111 1112334456889999999998754321 11113478999999999885
Q ss_pred ccccCchHHHHHHHHHHHHHhcccceeEeeecccCh
Q 036378 329 EWSHNFRPSYMRLRASLLRARLNVECILAMTATATT 364 (815)
Q Consensus 329 ~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~ 364 (815)
.- ..|..+ +. .....+|+|||||.+
T Consensus 160 ~~-----~~~~~i----~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 160 SD-----SSYREI----IE--FKAAFILGLTATPFR 184 (184)
T ss_dssp HH-----HHHHHH----HH--SSCCEEEEEESS-S-
T ss_pred CH-----HHHHHH----Hc--CCCCeEEEEEeCccC
Confidence 31 113344 32 566789999999863
No 137
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.54 E-value=3.7e-12 Score=147.23 Aligned_cols=173 Identities=16% Similarity=0.067 Sum_probs=105.9
Q ss_pred eeEeeecccChhH------HHHHHHHhcCCcccee-ecccc----CCCeeEEEEe------cCCcc---chh--------
Q 036378 354 CILAMTATATTTT------LRDVMSALEIPLSNLI-QKAQL----RDNLQLSVSL------SGNNR---QNE-------- 405 (815)
Q Consensus 354 ~vl~lSAT~~~~~------~~~i~~~l~~~~~~~~-~~~~~----~~~l~~~v~~------~~~~~---~~~-------- 405 (815)
.+|+.|||++... ...+.+.++++..... ..++. +..+...... ..+.. ...
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 5789999988744 6778888887644222 33344 3331111111 01111 000
Q ss_pred --hhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhc----CCceEEEEc
Q 036378 406 --RSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS----NKIRVVVAT 479 (815)
Q Consensus 406 --~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~----g~~~VLVaT 479 (815)
.....+.+..++.. .++.++|.+.+.+..+.+++.|...---...+.|+.+ .+...+++|+. |...||++|
T Consensus 453 ~~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 453 TWLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred hHHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 01122333333333 3458889999999999999999764323455666543 45667888887 478999999
Q ss_pred ccccccccc--------C--CccEEEEeCCCCC-------------------------HHHHHHHHcccCCCCCC--ceE
Q 036378 480 VAFGMGLDK--------R--DVGAVIHYSLPES-------------------------LEEYVQEIGRAGRDGRL--SYC 522 (815)
Q Consensus 480 ~~~~~GID~--------p--~v~~VI~~d~P~s-------------------------~~~y~Qr~GRaGR~g~~--g~~ 522 (815)
..|..|||+ | .++.||...+|.. .-.+.|-+||.=|.... --.
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~ 609 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR 609 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE
Confidence 999999999 2 3788998887731 12337888888887654 334
Q ss_pred EEEeccc
Q 036378 523 HLFLDDI 529 (815)
Q Consensus 523 i~l~~~~ 529 (815)
+.++++.
T Consensus 610 i~ilD~R 616 (636)
T TIGR03117 610 IHMLDGR 616 (636)
T ss_pred EEEEeCC
Confidence 4444443
No 138
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.53 E-value=1.3e-13 Score=149.50 Aligned_cols=277 Identities=19% Similarity=0.189 Sum_probs=173.5
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVL 294 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Il 294 (815)
.+-++-+|||.||||--++- =+......++-.|++-||.++++++++ +++...+.+ +|+.....+ ...+..+
T Consensus 191 RkIi~H~GPTNSGKTy~ALq-rl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TG----eE~~~~~~~--~~~a~hv 263 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQ-RLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTG----EERRFVLDN--GNPAQHV 263 (700)
T ss_pred heEEEEeCCCCCchhHHHHH-HHhhhccceecchHHHHHHHHHHHhhhcCCCcccccc----ceeeecCCC--CCcccce
Confidence 44567789999999975322 233466789999999999999999998 444332222 111111110 0124556
Q ss_pred EeChhhhhchhhhhhhhhcCcccEEEEecccccccccc--CchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHH
Q 036378 295 FVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSH--NFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMS 372 (815)
Q Consensus 295 i~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~--~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~ 372 (815)
=||-|...- -..+++.||||++.|.+-.. .+...++-+.. ...++ .+ .+.++..+.+
T Consensus 264 ScTVEM~sv---------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~A-------dEiHL---CG--epsvldlV~~ 322 (700)
T KOG0953|consen 264 SCTVEMVSV---------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAA-------DEIHL---CG--EPSVLDLVRK 322 (700)
T ss_pred EEEEEEeec---------CCceEEEEehhHHhhcCcccchHHHHHHHhhhh-------hhhhc---cC--CchHHHHHHH
Confidence 666555421 23689999999999986322 22222222211 11111 11 1233333333
Q ss_pred HhcCCccceeeccccC-CCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCc-EE
Q 036378 373 ALEIPLSNLIQKAQLR-DNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSIS-VK 450 (815)
Q Consensus 373 ~l~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~-v~ 450 (815)
.+......+....+.| .++... +.+..-+..++.+.++ .|-+++..-.+...+.+.|.. +.
T Consensus 323 i~k~TGd~vev~~YeRl~pL~v~----------------~~~~~sl~nlk~GDCv-V~FSkk~I~~~k~kIE~~g~~k~a 385 (700)
T KOG0953|consen 323 ILKMTGDDVEVREYERLSPLVVE----------------ETALGSLSNLKPGDCV-VAFSKKDIFTVKKKIEKAGNHKCA 385 (700)
T ss_pred HHhhcCCeeEEEeecccCcceeh----------------hhhhhhhccCCCCCeE-EEeehhhHHHHHHHHHHhcCcceE
Confidence 3332222221111111 111110 0011222333444444 467788888888999888876 99
Q ss_pred EecCCCCHHHHHHHHHHHhc--CCceEEEEccccccccccCCccEEEEeCCC---------CCHHHHHHHHcccCCCCCC
Q 036378 451 SYHSGIPAKDRSRIQELFCS--NKIRVVVATVAFGMGLDKRDVGAVIHYSLP---------ESLEEYVQEIGRAGRDGRL 519 (815)
Q Consensus 451 ~~h~~~~~~~R~~i~~~F~~--g~~~VLVaT~~~~~GID~p~v~~VI~~d~P---------~s~~~y~Qr~GRaGR~g~~ 519 (815)
+++|+++++.|.+--..|.+ ++.+|||||||+|||+|. +|+-||.+++- -+..+..|.+|||||.|..
T Consensus 386 VIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 386 VIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 99999999999999999987 899999999999999998 69999988865 3777889999999998753
Q ss_pred ---ceEEEEeccccHHHHHHhhh
Q 036378 520 ---SYCHLFLDDITYFRLRSLMY 539 (815)
Q Consensus 520 ---g~~i~l~~~~d~~~l~~~~~ 539 (815)
|.+..+. .+|+..+++++.
T Consensus 465 ~~~G~vTtl~-~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 465 YPQGEVTTLH-SEDLKLLKRILK 486 (700)
T ss_pred CcCceEEEee-HhhHHHHHHHHh
Confidence 6665554 567888887764
No 139
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.53 E-value=3.1e-14 Score=121.83 Aligned_cols=81 Identities=42% Similarity=0.601 Sum_probs=78.0
Q ss_pred HHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC
Q 036378 437 LISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD 516 (815)
Q Consensus 437 ~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~ 516 (815)
.+++.|...++.+..+||+++.++|..+++.|.++...|||+|+++++|+|+|++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 57788888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 036378 517 G 517 (815)
Q Consensus 517 g 517 (815)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 140
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.53 E-value=1.6e-12 Score=150.25 Aligned_cols=311 Identities=17% Similarity=0.129 Sum_probs=188.0
Q ss_pred CCCHHHHHHHHHHHc---CC-------CEEEEcCCChhHHHHHHHHH---HHc--C-----CcEEEEcccHHHHHHHHHh
Q 036378 201 SFRDGQLEAIKMVLD---KK-------STMLVLPTGAGKSLCYQIPA---MIL--P-----GLTLVVCPLVALMIDQLRH 260 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~---g~-------d~li~apTGsGKTl~~~lp~---l~~--~-----~~~lVl~P~~~L~~q~~~~ 260 (815)
.++|+|++++.-+.+ |. -+|+.-..|+|||+....-+ +.. . .++|||+|. .|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 588999999988763 22 35677789999997533222 222 3 679999997 899999999
Q ss_pred cCCCcee-----eeeccCCChHHHHHHHHHH----hcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccc
Q 036378 261 LPPVIHG-----GFLSSSQRPEEVAETIRLI----QVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWS 331 (815)
Q Consensus 261 l~~~~~~-----~~i~~~~~~~~~~~~~~~l----~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g 331 (815)
|.++... ..+.+.... .+.....-+ ..-..-|++.+.+.+... .+.+. ...++++|+||.|++-..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~--~~~il-~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDY--CRKIL-LIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHH--HHHHh-cCCCCeEEECCCCCccch-
Confidence 9985332 222222221 011100001 111245777888877633 22233 558999999999987531
Q ss_pred cCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeec---------------------------
Q 036378 332 HNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQK--------------------------- 384 (815)
Q Consensus 332 ~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~--------------------------- 384 (815)
-..+...+. . ...++-|+||+|+-.+.+..+...+.+-.+.++..
T Consensus 392 ------~s~~~kaL~-~-l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~ 463 (776)
T KOG0390|consen 392 ------DSLTLKALS-S-LKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER 463 (776)
T ss_pred ------hhHHHHHHH-h-cCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh
Confidence 122322222 2 23445688999999877776666655433211110
Q ss_pred ------------------------cccCCCeeEEEEecCCccchhh----------------------------------
Q 036378 385 ------------------------AQLRDNLQLSVSLSGNNRQNER---------------------------------- 406 (815)
Q Consensus 385 ------------------------~~~~~~l~~~v~~~~~~~~~~~---------------------------------- 406 (815)
..++.-..+.+...........
T Consensus 464 ~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~ 543 (776)
T KOG0390|consen 464 EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLL 543 (776)
T ss_pred HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhh
Confidence 0111111111111110000000
Q ss_pred ---------------------------------hhhHHHHHHHHhhcc---ccceEEEecchHHHHHHHHHHhhCCCcEE
Q 036378 407 ---------------------------------SAYVDEVFSFHRSSK---HYYILQISGKHFETDLISRYLCDNSISVK 450 (815)
Q Consensus 407 ---------------------------------~~~~~~l~~l~~~~~---~~~~ivf~~s~~~~e~l~~~L~~~g~~v~ 450 (815)
..++..+..++.... ...+.++.+-+...+.+....+-.|..+.
T Consensus 544 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~ 623 (776)
T KOG0390|consen 544 LLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVL 623 (776)
T ss_pred cccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEE
Confidence 000011111111100 11122223444445555555666799999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCc--e-EEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEE
Q 036378 451 SYHSGIPAKDRSRIQELFCSNKI--R-VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525 (815)
Q Consensus 451 ~~h~~~~~~~R~~i~~~F~~g~~--~-VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l 525 (815)
.+||.|+..+|..+++.|.+... . .|.+|.|.|.||+.-+...||.||..++++.-.|.++||-|+|++-.|+++
T Consensus 624 rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 624 RLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 99999999999999999987432 3 566788999999999999999999999999999999999999998766655
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=4.1e-12 Score=147.86 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=93.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+..++.+| ++|+=.+.+-.+.-.+--|+.|.||-||||++.+|++.. +..|-||++.--||..-.+.+..
T Consensus 75 REa~~R~lG---~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 75 REASKRVLG---MRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred HHHHHHHhC---CCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 455666677 344444455555557778999999999999999999864 78899999999999866555554
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh------hcCcccEEEEecccccc
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT------ATSLISLVVVDEAHCVS 328 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~------~~~~i~~lViDEaH~i~ 328 (815)
++..+.+...+...+..... .++|+|+|+..|.-...++.+. ....+.+.||||+|.++
T Consensus 152 ~LGLtvg~i~~~~~~~err~aY------~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 152 FLGLSVGLIQQDMSPEERKKNY------ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HhCCeEEEECCCCChHHHHHhc------CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 56667776777666655443 5899999999883322222111 14578999999999874
No 142
>COG4889 Predicted helicase [General function prediction only]
Probab=99.50 E-value=2.3e-13 Score=153.36 Aligned_cols=321 Identities=17% Similarity=0.204 Sum_probs=180.7
Q ss_pred CCCCHHHHHHHHHHHcC----CCEEEEcCCChhHHHHHHHHHH-HcCCcEEEEcccHHHHHHHHHhcCCC----ceeeee
Q 036378 200 DSFRDGQLEAIKMVLDK----KSTMLVLPTGAGKSLCYQIPAM-ILPGLTLVVCPLVALMIDQLRHLPPV----IHGGFL 270 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g----~d~li~apTGsGKTl~~~lp~l-~~~~~~lVl~P~~~L~~q~~~~l~~~----~~~~~i 270 (815)
.+|||+|+.||.+..+| ...=++|.+|+|||.+.+-.+- ....++|+++|+++|..|..+.+..- +....+
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aV 239 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASAV 239 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEEE
Confidence 48999999999999874 3456788999999988764432 23588999999999999999988651 222111
Q ss_pred c--------------------cCCChHHHHHHHHH-HhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccc
Q 036378 271 S--------------------SSQRPEEVAETIRL-IQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSE 329 (815)
Q Consensus 271 ~--------------------~~~~~~~~~~~~~~-l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~ 329 (815)
. .+.....+-..+.. -+..+.-|+++|...+.......... +..+++||.||||+-.-
T Consensus 240 cSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G-~~~fDliicDEAHRTtG 318 (1518)
T COG4889 240 CSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAG-LDEFDLIICDEAHRTTG 318 (1518)
T ss_pred ecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcC-CCCccEEEecchhcccc
Confidence 1 11222222222221 12345779999999887654444444 77899999999998641
Q ss_pred c---ccCchHHHHHHHHHHHHHhcccceeEeeecccChhHH---HHHHHH----hcCCccceeeccccCC----------
Q 036378 330 W---SHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL---RDVMSA----LEIPLSNLIQKAQLRD---------- 389 (815)
Q Consensus 330 ~---g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~---~~i~~~----l~~~~~~~~~~~~~~~---------- 389 (815)
- |.+ ...+.++ . -.........+.|||||..-.. ...... ..+.....+...+.+-
T Consensus 319 a~~a~dd-~saFt~v-H--s~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdl 394 (1518)
T COG4889 319 ATLAGDD-KSAFTRV-H--SDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDL 394 (1518)
T ss_pred ceecccC-cccceee-c--CcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhh
Confidence 0 000 0001111 0 0001112235789999753111 111110 0111111111111110
Q ss_pred --CeeEEEEecCCccc-----------------hhhhhhHHHHHHHHhhc------c--------ccceEEEecchHHHH
Q 036378 390 --NLQLSVSLSGNNRQ-----------------NERSAYVDEVFSFHRSS------K--------HYYILQISGKHFETD 436 (815)
Q Consensus 390 --~l~~~v~~~~~~~~-----------------~~~~~~~~~l~~l~~~~------~--------~~~~ivf~~s~~~~e 436 (815)
.....|.......- ......+-.-..+.+.. . -.+.+.||.+.++..
T Consensus 395 LTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK 474 (1518)
T COG4889 395 LTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSK 474 (1518)
T ss_pred hccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHH
Confidence 00111111110000 00000000001111110 0 123466787777766
Q ss_pred HHHHHHhh-------------CC--CcEEEecCCCCHHHHHHHHH---HHhcCCceEEEEccccccccccCCccEEEEeC
Q 036378 437 LISRYLCD-------------NS--ISVKSYHSGIPAKDRSRIQE---LFCSNKIRVVVATVAFGMGLDKRDVGAVIHYS 498 (815)
Q Consensus 437 ~l~~~L~~-------------~g--~~v~~~h~~~~~~~R~~i~~---~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d 498 (815)
.+++.+.. .+ +.+....|.|...+|...+. .|..++++||--.-.++.|+|+|..+.||.++
T Consensus 475 ~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~ 554 (1518)
T COG4889 475 QIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFD 554 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEec
Confidence 66654432 23 34556668899999854433 34567899998888899999999999999999
Q ss_pred CCCCHHHHHHHHcccCCCCC---CceEEEE
Q 036378 499 LPESLEEYVQEIGRAGRDGR---LSYCHLF 525 (815)
Q Consensus 499 ~P~s~~~y~Qr~GRaGR~g~---~g~~i~l 525 (815)
.-.++.+.+|.+||+.|-.. .|+.++=
T Consensus 555 pr~smVDIVQaVGRVMRKa~gK~yGYIILP 584 (1518)
T COG4889 555 PRSSMVDIVQAVGRVMRKAKGKKYGYIILP 584 (1518)
T ss_pred CchhHHHHHHHHHHHHHhCcCCccceEEEE
Confidence 99999999999999999632 2555543
No 143
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.49 E-value=1.1e-13 Score=147.76 Aligned_cols=305 Identities=18% Similarity=0.186 Sum_probs=190.6
Q ss_pred CCCCHHHHHHHHHHHc-C--CCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCCce--eeeeccCC
Q 036378 200 DSFRDGQLEAIKMVLD-K--KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIH--GGFLSSSQ 274 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~-g--~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~~~--~~~i~~~~ 274 (815)
..+||+|++.+..+.. | ++.+++.|+|+|||++-.-++..-.+.|||++..-.-+.||..++..+.. ...+...+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT 380 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT 380 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEee
Confidence 3789999999999874 3 48899999999999998777777789999999999999999999887422 11111111
Q ss_pred ChHHHHHHHHHHhcCCceEEEeChhhhhchhh-----hhhhhh--cCcccEEEEeccccccccccCchHHHHHHHHHHHH
Q 036378 275 RPEEVAETIRLIQVGAIKVLFVSPERFLNADF-----LSIFTA--TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR 347 (815)
Q Consensus 275 ~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~-----~~~~~~--~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~ 347 (815)
+.. +.-..+++.|+|.|...+..... ...+.. -..++++++||+|.+-.. -||--..- ..
T Consensus 381 sd~------Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~--MFRRVlsi-----v~ 447 (776)
T KOG1123|consen 381 SDA------KERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK--MFRRVLSI-----VQ 447 (776)
T ss_pred ccc------cccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH--HHHHHHHH-----HH
Confidence 110 11112358899999998864211 111111 347999999999998632 34432221 21
Q ss_pred HhcccceeEeeecccChhHHH--HH----------HHHhcCCccceee------------ccccCCCeeE-----EEEec
Q 036378 348 ARLNVECILAMTATATTTTLR--DV----------MSALEIPLSNLIQ------------KAQLRDNLQL-----SVSLS 398 (815)
Q Consensus 348 ~~~~~~~vl~lSAT~~~~~~~--~i----------~~~l~~~~~~~~~------------~~~~~~~l~~-----~v~~~ 398 (815)
. ..-|+||||+-.+.-. |+ ..|+.+.....+. ..+.+..+.. .....
T Consensus 448 a----HcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyv 523 (776)
T KOG1123|consen 448 A----HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYV 523 (776)
T ss_pred H----HhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeee
Confidence 1 2358999998765422 11 0111111000000 0000000000 00000
Q ss_pred CCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC-CceEEE
Q 036378 399 GNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN-KIRVVV 477 (815)
Q Consensus 399 ~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g-~~~VLV 477 (815)
-+..+.... ..|... +...+.++|||..+.-.....|-.|.+ -++.|..++.+|.+|++.|+.+ .+..|+
T Consensus 524 MNP~KFraC---qfLI~~-HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 524 MNPNKFRAC---QFLIKF-HERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred cCcchhHHH---HHHHHH-HHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEE
Confidence 000110000 111122 223678899998887777777666643 4678999999999999999964 788888
Q ss_pred EccccccccccCCccEEEEeCCCC-CHHHHHHHHcccCCCCC------CceEEEEecccc
Q 036378 478 ATVAFGMGLDKRDVGAVIHYSLPE-SLEEYVQEIGRAGRDGR------LSYCHLFLDDIT 530 (815)
Q Consensus 478 aT~~~~~GID~p~v~~VI~~d~P~-s~~~y~Qr~GRaGR~g~------~g~~i~l~~~~d 530 (815)
-..+....||+|..+++|+...-. |-..-.||.||.-|+-+ .++.|.|++.+.
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 899999999999999999876543 77788999999988643 244555555543
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.46 E-value=5.8e-11 Score=141.61 Aligned_cols=115 Identities=18% Similarity=0.128 Sum_probs=79.7
Q ss_pred HHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHh----cCCceEEEEccccccc
Q 036378 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFC----SNKIRVVVATVAFGMG 485 (815)
Q Consensus 410 ~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~----~g~~~VLVaT~~~~~G 485 (815)
.+.+..++. ..+.++|++++.+..+.+++.|....-.-...+|.. .|..+++.|+ .++..||++|..|..|
T Consensus 524 ~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EG 598 (697)
T PRK11747 524 AEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEG 598 (697)
T ss_pred HHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecccccc
Confidence 344445555 344589999999999999999975321234446642 4677786666 4677899999999999
Q ss_pred cccCC--ccEEEEeCCCCC----H--------------------------HHHHHHHcccCCCCCCceEEEEeccc
Q 036378 486 LDKRD--VGAVIHYSLPES----L--------------------------EEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 486 ID~p~--v~~VI~~d~P~s----~--------------------------~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
||+|+ .++||...+|.. + ..+.|-+||.=|....--+++++++.
T Consensus 599 VD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 599 LDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred ccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 99997 678998887741 1 12278889999986543345555543
No 145
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.45 E-value=2.7e-11 Score=145.24 Aligned_cols=113 Identities=18% Similarity=0.090 Sum_probs=81.3
Q ss_pred HHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHHHHhcCCc-eEEEEcccccccccc
Q 036378 411 DEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSIS-VKSYHSGIPAKDRSRIQELFCSNKI-RVVVATVAFGMGLDK 488 (815)
Q Consensus 411 ~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~-v~~~h~~~~~~~R~~i~~~F~~g~~-~VLVaT~~~~~GID~ 488 (815)
..+..+....+ ++++||+.+.+..+.+++.+...... ....+|..+ +...++.|..+.- -++|+|..|..|||+
T Consensus 469 ~~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 469 AYLREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 33334444433 38999999999999999999987663 445555444 4478888887655 899999999999999
Q ss_pred CCc--cEEEEeCCCC------------------------------CHHHHHHHHcccCCCCCCceEEEEec
Q 036378 489 RDV--GAVIHYSLPE------------------------------SLEEYVQEIGRAGRDGRLSYCHLFLD 527 (815)
Q Consensus 489 p~v--~~VI~~d~P~------------------------------s~~~y~Qr~GRaGR~g~~g~~i~l~~ 527 (815)
++= +.||...+|. .+....|.+||+=|.-..--.+++++
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 975 6788888774 23344899999999754433334443
No 146
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.42 E-value=2e-11 Score=137.63 Aligned_cols=321 Identities=19% Similarity=0.198 Sum_probs=210.6
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCChhHHHH---HHHHHHHc--CCcEEEEcccHHHHHHHHHhcCCCceeeeec
Q 036378 201 SFRDGQLEAIKMVL----DKKSTMLVLPTGAGKSLC---YQIPAMIL--PGLTLVVCPLVALMIDQLRHLPPVIHGGFLS 271 (815)
Q Consensus 201 ~~~~~Q~~ai~~il----~g~d~li~apTGsGKTl~---~~lp~l~~--~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~ 271 (815)
++.++|.-.+..+. .+-+.|+.-..|-|||.. |+..+... .+.-|||||.-. +..|.++|.++++...+.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsST-leNWlrEf~kwCPsl~Ve 477 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSST-LENWLREFAKWCPSLKVE 477 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchh-HHHHHHHHHHhCCceEEE
Confidence 46789998888765 345789999999999953 22222222 678899999854 578999999987766555
Q ss_pred cCCCh-HHHHHHHHHHhcC--CceEEEeChhhhhchhhh-hhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHH
Q 036378 272 SSQRP-EEVAETIRLIQVG--AIKVLFVSPERFLNADFL-SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR 347 (815)
Q Consensus 272 ~~~~~-~~~~~~~~~l~~g--~~~Ili~TPe~L~~~~~~-~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~ 347 (815)
...+. .++...-..+..+ .++|+++|..-..+...- ..+. -.+++++|.||+|.+-+.+ ...|..+ +.
T Consensus 478 ~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk-~~~~n~viyDEgHmLKN~~---SeRy~~L----M~ 549 (941)
T KOG0389|consen 478 PYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLK-NQKFNYVIYDEGHMLKNRT---SERYKHL----MS 549 (941)
T ss_pred eccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHH-hccccEEEecchhhhhccc---hHHHHHh----cc
Confidence 44433 3444444455554 799999998877653222 2222 3478999999999987532 2334443 11
Q ss_pred HhcccceeEeeecccChhHHHHHHHHhcCCccceee-------------------------------------cc-----
Q 036378 348 ARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQ-------------------------------------KA----- 385 (815)
Q Consensus 348 ~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~-------------------------------------~~----- 385 (815)
.+....|++|+||-...+..+...|.+-.+.++. .+
T Consensus 550 --I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 550 --INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred --ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 1233568899999886665555544321110000 00
Q ss_pred -------ccCCCeeEEEEec-C-----------------------C-ccch--hh-------------------------
Q 036378 386 -------QLRDNLQLSVSLS-G-----------------------N-NRQN--ER------------------------- 406 (815)
Q Consensus 386 -------~~~~~l~~~v~~~-~-----------------------~-~~~~--~~------------------------- 406 (815)
.+++.+...-... . + .... ..
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 0111111100000 0 0 0000 00
Q ss_pred --------------h--------------------------------------hhHHHHHHHHhhc--cccceEEEecch
Q 036378 407 --------------S--------------------------------------AYVDEVFSFHRSS--KHYYILQISGKH 432 (815)
Q Consensus 407 --------------~--------------------------------------~~~~~l~~l~~~~--~~~~~ivf~~s~ 432 (815)
. .+...|..++... ++.++++|..--
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 0 0001122222221 357888998888
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCC--ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHH
Q 036378 433 FETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK--IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEI 510 (815)
Q Consensus 433 ~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~--~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~ 510 (815)
...+.|...|...++....+.|...-..|..+++.|...+ .-.|++|.|.|-|||....++||.+|+..++-+=.|.-
T Consensus 788 qmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAE 867 (941)
T KOG0389|consen 788 QMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAE 867 (941)
T ss_pred HHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhH
Confidence 8888899999999999999999999999999999998764 34678999999999999999999999999999999999
Q ss_pred cccCCCCCC--ceEEEEeccccHH
Q 036378 511 GRAGRDGRL--SYCHLFLDDITYF 532 (815)
Q Consensus 511 GRaGR~g~~--g~~i~l~~~~d~~ 532 (815)
-||.|.|+. -.++-|+++..+.
T Consensus 868 DRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred HHHHhhCCcceeEEEEEEecCcHH
Confidence 999999986 4556677776543
No 147
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.39 E-value=1.3e-12 Score=123.30 Aligned_cols=135 Identities=23% Similarity=0.330 Sum_probs=91.5
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHc-----CCcEEEEcccHHHHHHHHHhcCCCc----eeeeeccCCChHHHHHHHHHHh
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMIL-----PGLTLVVCPLVALMIDQLRHLPPVI----HGGFLSSSQRPEEVAETIRLIQ 287 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~-----~~~~lVl~P~~~L~~q~~~~l~~~~----~~~~i~~~~~~~~~~~~~~~l~ 287 (815)
+++++.+|||+|||.++...+... .+.++|++|+.+|+.|+.+.+.... ....+.......... ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHh
Confidence 468999999999999888777643 4889999999999999988887633 223333322222111 223
Q ss_pred cCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeeccc
Q 036378 288 VGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATA 362 (815)
Q Consensus 288 ~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~ 362 (815)
....+|+++|++.+.......... ...++++||||+|.+..- .+.... ...........+++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~-~~~~~~iiiDE~h~~~~~--~~~~~~----~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLS-LKKLDLLILDEAHRLLNQ--GFGLLG----LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcc-hhcCCEEEEeCHHHHhhc--chHHHH----HHHHhhCCccceEEEEeccC
Confidence 356899999999987654433222 447899999999999742 222211 11223345667899999996
No 148
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.39 E-value=5.2e-12 Score=135.31 Aligned_cols=313 Identities=17% Similarity=0.151 Sum_probs=196.2
Q ss_pred CCCCCHHHHHHHHHHH-cCCCEEEEcCCChhHHHHHHHHHH--HcCCcEEEEcccHHHHHHHHHhcCCCceeeee-ccCC
Q 036378 199 YDSFRDGQLEAIKMVL-DKKSTMLVLPTGAGKSLCYQIPAM--ILPGLTLVVCPLVALMIDQLRHLPPVIHGGFL-SSSQ 274 (815)
Q Consensus 199 ~~~~~~~Q~~ai~~il-~g~d~li~apTGsGKTl~~~lp~l--~~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i-~~~~ 274 (815)
+..+-|+|++.+...+ .|..+++.-..|-|||+.++.-+. ......|||+|. +|-..|.+.+..+++.... +...
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~ 274 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVD 274 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEe
Confidence 3467799999888766 577899999999999997665443 347788999997 6667788888776543221 1111
Q ss_pred ChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccce
Q 036378 275 RPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC 354 (815)
Q Consensus 275 ~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~ 354 (815)
...+.-. .-.. ...|.|.+.+.+..+ .+.+. -..+++||+||.|.+-+- +. .++ +....-.....+
T Consensus 275 ~~~D~~~--~~~t--~~~v~ivSye~ls~l--~~~l~-~~~~~vvI~DEsH~Lk~s----kt--kr~-Ka~~dllk~akh 340 (689)
T KOG1000|consen 275 KSSDPLP--DVCT--SNTVAIVSYEQLSLL--HDILK-KEKYRVVIFDESHMLKDS----KT--KRT-KAATDLLKVAKH 340 (689)
T ss_pred cccCCcc--cccc--CCeEEEEEHHHHHHH--HHHHh-cccceEEEEechhhhhcc----ch--hhh-hhhhhHHHHhhh
Confidence 1111000 0011 247899999988644 22332 345899999999988641 11 111 222222223457
Q ss_pred eEeeecccChhHH-------------------HHHHHHhcCCccc----------------------eee------cccc
Q 036378 355 ILAMTATATTTTL-------------------RDVMSALEIPLSN----------------------LIQ------KAQL 387 (815)
Q Consensus 355 vl~lSAT~~~~~~-------------------~~i~~~l~~~~~~----------------------~~~------~~~~ 387 (815)
+|+||+||...-- +...++....... .++ ...+
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999864211 1111111100000 000 0111
Q ss_pred CCCeeEEEEecCCccchh--------------------hhh-----------hHHHH-HHHH-----hhccccceEEEec
Q 036378 388 RDNLQLSVSLSGNNRQNE--------------------RSA-----------YVDEV-FSFH-----RSSKHYYILQISG 430 (815)
Q Consensus 388 ~~~l~~~v~~~~~~~~~~--------------------~~~-----------~~~~l-~~l~-----~~~~~~~~ivf~~ 430 (815)
++.-...+.......... ... ++..+ ..++ -.....+++|||.
T Consensus 421 PpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaH 500 (689)
T KOG1000|consen 421 PPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAH 500 (689)
T ss_pred CccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEeh
Confidence 222122222211110000 000 00011 1111 2224567899999
Q ss_pred chHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC-CceE-EEEccccccccccCCccEEEEeCCCCCHHHHHH
Q 036378 431 KHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN-KIRV-VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQ 508 (815)
Q Consensus 431 s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g-~~~V-LVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Q 508 (815)
-....+.+..++.+.++....+.|..+..+|....+.|+.+ +++| +++-.++++|+++...+.||...+++++--.+|
T Consensus 501 H~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQ 580 (689)
T KOG1000|consen 501 HQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQ 580 (689)
T ss_pred hHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEe
Confidence 99999999999999999999999999999999999999865 5555 446678999999999999999999999999999
Q ss_pred HHcccCCCCCCceEEEEe
Q 036378 509 EIGRAGRDGRLSYCHLFL 526 (815)
Q Consensus 509 r~GRaGR~g~~g~~i~l~ 526 (815)
.-.|+.|-|+.+-+.+.|
T Consensus 581 AEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 581 AEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred chhhhhhccccceeeEEE
Confidence 999999999987655444
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=1e-10 Score=137.63 Aligned_cols=108 Identities=23% Similarity=0.151 Sum_probs=91.0
Q ss_pred cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccC--------Ccc
Q 036378 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR--------DVG 492 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p--------~v~ 492 (815)
.+.|++|-+.+....+.|++.|...|++..++++.....|-.-|-+.=+. -.|-|||+++|||-||. +==
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGTDIkLg~~V~e~GGL 704 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGTDIKLSPEVKAAGGL 704 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCcCcccchhhHHcCCC
Confidence 67899999999999999999999999998888887655554444443222 34899999999999986 334
Q ss_pred EEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 493 AVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 493 ~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
+||--..+.|..---|-.|||||.|.+|.+..|++-+|
T Consensus 705 ~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 705 AIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred EEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 79999999999999999999999999999999998765
No 150
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.31 E-value=6e-10 Score=133.98 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=59.4
Q ss_pred hcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCChhHHHHHHHHHHHc----C--CcEEEEcccHHHHHHHHHhcCC
Q 036378 196 VYGYDSFRDGQLEAIKMVL----DKKSTMLVLPTGAGKSLCYQIPAMIL----P--GLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 196 ~~g~~~~~~~Q~~ai~~il----~g~d~li~apTGsGKTl~~~lp~l~~----~--~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
+|.|..++|.|.+.+..+. .|++.++.+|||+|||++.+.|++.. + .++++.+.|.+=..|.+++|++
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 5889999999999887765 58899999999999999999998842 3 5899999999999999998877
No 151
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.30 E-value=5.5e-11 Score=137.20 Aligned_cols=315 Identities=17% Similarity=0.226 Sum_probs=210.7
Q ss_pred CCCCHHHHHHHHHHHc---C-CCEEEEcCCChhHHHHHH------HHHHHcCCcEEEEcccHHHHHHHHHhcCCCceee-
Q 036378 200 DSFRDGQLEAIKMVLD---K-KSTMLVLPTGAGKSLCYQ------IPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGG- 268 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~---g-~d~li~apTGsGKTl~~~------lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~~~~~- 268 (815)
.+++++|...+..+.+ + -+.++.-.+|-|||..-+ +=.....|.-|||||+-.|. .|..++..+.+..
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~-NW~~Ef~kWaPSv~ 471 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLV-NWSSEFPKWAPSVQ 471 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccC-Cchhhcccccccee
Confidence 3889999999998764 3 378899999999996432 22223478899999997776 4667777765443
Q ss_pred eeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHH
Q 036378 269 FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRA 348 (815)
Q Consensus 269 ~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~ 348 (815)
.+.......++......++.|+.+||++|.+.+... ...+. --++.++||||.|+|..- . .++ ...+..
T Consensus 472 ~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd--k~lLs-KI~W~yMIIDEGHRmKNa----~---~KL-t~~L~t 540 (1157)
T KOG0386|consen 472 KIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD--KALLS-KISWKYMIIDEGHRMKNA----I---CKL-TDTLNT 540 (1157)
T ss_pred eeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC--HHHHh-ccCCcceeecccccccch----h---hHH-HHHhhc
Confidence 333344555666666778889999999999998762 22233 236889999999999741 1 222 222333
Q ss_pred hcccceeEeeecccChhHHHHHHHHhcCCccceeecc-------------------------------------------
Q 036378 349 RLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA------------------------------------------- 385 (815)
Q Consensus 349 ~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------------------------------------------- 385 (815)
.......+++|+|+....+..+...|++..+.++...
T Consensus 541 ~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHh
Confidence 3444567888999877655544444433222111100
Q ss_pred -------ccCCCeeEEEE-----------------------------------------------------------ecC
Q 036378 386 -------QLRDNLQLSVS-----------------------------------------------------------LSG 399 (815)
Q Consensus 386 -------~~~~~l~~~v~-----------------------------------------------------------~~~ 399 (815)
.++..+.+.+. ...
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~ 700 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHY 700 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccccccc
Confidence 00000000000 000
Q ss_pred Cc-cchhhhhhHHHHHHHHhhc--cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCC---c
Q 036378 400 NN-RQNERSAYVDEVFSFHRSS--KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK---I 473 (815)
Q Consensus 400 ~~-~~~~~~~~~~~l~~l~~~~--~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~---~ 473 (815)
.. .-.....+...+..++..+ .++.++.||.-..-...+..+|.-.++....+.|....++|...++.|..-. .
T Consensus 701 ~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf 780 (1157)
T KOG0386|consen 701 DIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYF 780 (1157)
T ss_pred ChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCcee
Confidence 00 0000000111222222222 2567888888888888899999999999999999999999999999998754 3
Q ss_pred eEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEe
Q 036378 474 RVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526 (815)
Q Consensus 474 ~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~ 526 (815)
..|..|-+.|.|+|..-.+.||.||.-+++-...|+--||-|-|+.-.+-++.
T Consensus 781 ~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 781 IFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred eeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 46889999999999999999999999999999999999999999986665554
No 152
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.28 E-value=2.8e-10 Score=133.40 Aligned_cols=315 Identities=18% Similarity=0.180 Sum_probs=196.3
Q ss_pred CCCHHHHHHHHHHH--c--CCCEEEEcCCChhHHHHHHHHHH----Hc--------CCcEEEEcccHHHHHHHHHhcCCC
Q 036378 201 SFRDGQLEAIKMVL--D--KKSTMLVLPTGAGKSLCYQIPAM----IL--------PGLTLVVCPLVALMIDQLRHLPPV 264 (815)
Q Consensus 201 ~~~~~Q~~ai~~il--~--g~d~li~apTGsGKTl~~~lp~l----~~--------~~~~lVl~P~~~L~~q~~~~l~~~ 264 (815)
.+|.+|++.|..+. + +-+.|++-..|-|||+.-+--+. .+ ....|||||. .|+--|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 56789999998764 2 44889999999999985432221 11 2348999998 7999999999987
Q ss_pred ceeeeeccCCC-hHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHH
Q 036378 265 IHGGFLSSSQR-PEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRA 343 (815)
Q Consensus 265 ~~~~~i~~~~~-~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~ 343 (815)
++-..+....+ ..++... +-...+.+|+|++.+.+.+... .+. -..+.|+|+||-|-|-. -+....+.
T Consensus 1054 ~pfL~v~~yvg~p~~r~~l--R~q~~~~~iiVtSYDv~RnD~d--~l~-~~~wNYcVLDEGHVikN----~ktkl~ka-- 1122 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERREL--RDQYKNANIIVTSYDVVRNDVD--YLI-KIDWNYCVLDEGHVIKN----SKTKLTKA-- 1122 (1549)
T ss_pred cchhhhhhhcCChHHHHHH--HhhccccceEEeeHHHHHHHHH--HHH-hcccceEEecCcceecc----hHHHHHHH--
Confidence 66522222222 2222222 2222357999999998865321 111 23689999999998863 22222222
Q ss_pred HHHHHhcccceeEeeecccChhHHHHHHHHhcCCcccee------ec---------------------------------
Q 036378 344 SLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLI------QK--------------------------------- 384 (815)
Q Consensus 344 ~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~------~~--------------------------------- 384 (815)
.+.. .....+.+|+||..+...++...+.+--+..+ ..
T Consensus 1123 --vkqL-~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqV 1199 (1549)
T KOG0392|consen 1123 --VKQL-RANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQV 1199 (1549)
T ss_pred --HHHH-hhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHH
Confidence 2222 22245789999988666655554421100000 00
Q ss_pred -------------cccCCCee---------------------------EEEEecC--Cc-cch-----------------
Q 036378 385 -------------AQLRDNLQ---------------------------LSVSLSG--NN-RQN----------------- 404 (815)
Q Consensus 385 -------------~~~~~~l~---------------------------~~v~~~~--~~-~~~----------------- 404 (815)
..+++.+. ..+.... .. .+.
T Consensus 1200 LPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpa 1279 (1549)
T KOG0392|consen 1200 LPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPA 1279 (1549)
T ss_pred HHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcc
Confidence 00000000 0000000 00 000
Q ss_pred ---------------------------hhhhhHHHHHHHHhhc----------------cccceEEEecchHHHHHHHHH
Q 036378 405 ---------------------------ERSAYVDEVFSFHRSS----------------KHYYILQISGKHFETDLISRY 441 (815)
Q Consensus 405 ---------------------------~~~~~~~~l~~l~~~~----------------~~~~~ivf~~s~~~~e~l~~~ 441 (815)
....++..+..++... ..++++|||.-+...+.+.+-
T Consensus 1280 Lvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekD 1359 (1549)
T KOG0392|consen 1280 LVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKD 1359 (1549)
T ss_pred eeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHH
Confidence 0000111222222211 246789999999999999988
Q ss_pred HhhCCC-cEE--EecCCCCHHHHHHHHHHHhcC-CceEEE-EccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC
Q 036378 442 LCDNSI-SVK--SYHSGIPAKDRSRIQELFCSN-KIRVVV-ATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD 516 (815)
Q Consensus 442 L~~~g~-~v~--~~h~~~~~~~R~~i~~~F~~g-~~~VLV-aT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~ 516 (815)
|.+.-. .+. .+.|..++.+|.++.++|.++ .++||+ +|.+.|-|+|..+.+.||.++=-|++..=.|.+-||.|-
T Consensus 1360 L~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRI 1439 (1549)
T KOG0392|consen 1360 LFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRI 1439 (1549)
T ss_pred HhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhh
Confidence 876533 333 788999999999999999998 788765 778999999999999999999999999999999999999
Q ss_pred CCCce--EEEEecccc
Q 036378 517 GRLSY--CHLFLDDIT 530 (815)
Q Consensus 517 g~~g~--~i~l~~~~d 530 (815)
|++-. +|-|++...
T Consensus 1440 GQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1440 GQKRVVNVYRLITRGT 1455 (1549)
T ss_pred cCceeeeeeeehhccc
Confidence 98754 445555443
No 153
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.24 E-value=9.8e-10 Score=130.20 Aligned_cols=91 Identities=24% Similarity=0.227 Sum_probs=68.6
Q ss_pred EEEecchHHHHHHHHHHhhC----C--CcEEEecCCCCHHHHHHHHHHH----------------------hc----CCc
Q 036378 426 LQISGKHFETDLISRYLCDN----S--ISVKSYHSGIPAKDRSRIQELF----------------------CS----NKI 473 (815)
Q Consensus 426 ivf~~s~~~~e~l~~~L~~~----g--~~v~~~h~~~~~~~R~~i~~~F----------------------~~----g~~ 473 (815)
+|-+++.+.+-.+|..|... + +.+.+||+..+-..|..+.+.. .+ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 44488888888888887653 2 4578899999887776655442 11 467
Q ss_pred eEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCC
Q 036378 474 RVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRL 519 (815)
Q Consensus 474 ~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~ 519 (815)
.|+|+|++.+.|+|+. .+++|- -|.++.+.+|++||+-|.|..
T Consensus 840 ~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred eEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhcccccccC
Confidence 8999999999999974 555443 467899999999999998764
No 154
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.13 E-value=2.2e-12 Score=154.15 Aligned_cols=341 Identities=17% Similarity=0.109 Sum_probs=201.8
Q ss_pred ceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC--CceEEEEcccc---cccc-----ccCC---
Q 036378 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN--KIRVVVATVAF---GMGL-----DKRD--- 490 (815)
Q Consensus 424 ~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g--~~~VLVaT~~~---~~GI-----D~p~--- 490 (815)
-++|+..-..-.+.....|...++.+..+|++++..+|..+++.+++| .++||--|+-. ..|+ |...
T Consensus 306 itvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~ 385 (941)
T KOG0351|consen 306 VTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGL 385 (941)
T ss_pred ceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCe
Confidence 455666666666777777788899999999999999999999999999 88888777521 2221 1111
Q ss_pred -ccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh---------hcCCCCHHHHHHHHHHHhhcCC
Q 036378 491 -VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM---------YSDGVDEYAINKFLCQVFTNGM 560 (815)
Q Consensus 491 -v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~---------~~~~~~~~~i~~~l~~~~~~~~ 560 (815)
.++||. -.|.+--.|-+-++ ++..+..+. .-+......+++.+.+-++...
T Consensus 386 lal~vID---------EAHCVSqWgHdFRp----------~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~ 446 (941)
T KOG0351|consen 386 LALFVID---------EAHCVSQWGHDFRP----------SYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRN 446 (941)
T ss_pred eEEEEec---------HHHHhhhhcccccH----------HHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCC
Confidence 122221 23333333333222 222222211 1112233456666666555543
Q ss_pred CCCCCeeecchhHHHHHhCCCH--HHHHHHHHHHH---hcCcccEEeccccccceEEEecCCchhhhhhhHHHHHHHHhh
Q 036378 561 NSHGKLCSLVKESASRKFDIKE--EVMLTLLTCLE---LGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKK 635 (815)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~le---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 635 (815)
+..- .-+|++.++.-.+-.+. .....++..+. ..+.|||||..+...+-.-.++.+.....+.||+++..-.|.
T Consensus 447 ~~~~-~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~ 525 (941)
T KOG0351|consen 447 PELF-KSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERE 525 (941)
T ss_pred ccee-cccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHH
Confidence 2211 13566665532222222 22333333333 345799999877654433333333334456788888887776
Q ss_pred CCc---CCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE--------ecCceEEEEEeCCCchhhhhHHHHHH-
Q 036378 636 SET---KQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYE--------LKDPAYCYTIVEVPSDFCALSAHLTK- 703 (815)
Q Consensus 636 ~~~---~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~- 703 (815)
... ..+.+.+=++|+|++||+++.+|+.+||+-.++.++.|+ ++.++.|.+++... |...+---+..
T Consensus 526 ~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~-D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 526 TVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA-DISELRRLLTSG 604 (941)
T ss_pred HHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh-HHHHHHHHHHcc
Confidence 411 122233448999999999999999999999999999998 78899999998884 33332221211
Q ss_pred -HHHHHHH-HHHHHHHHHHHHHHhhhhhccccCCCCCCCCchHHHHHHhcccCCCC---------CCCCCccCCC--Cc-
Q 036378 704 -WLSEVEN-CKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD---------NCDVPNKIGQ--SS- 769 (815)
Q Consensus 704 -~~~~~e~-~~~~kl~~m~~y~~~~~~~~~~~~~~~~~~~~~cl~~~ll~YFge~~---------~c~~c~~~~~--~~- 769 (815)
......+ .....+.+|..|++ +.+.|++++++.||||.. .||+|....+ .+
T Consensus 605 ~~~~~~~~~~~~~~l~~~~~yCe---------------n~t~crr~~~l~~fge~f~~~~c~~~k~cd~C~~~~dv~~~~ 669 (941)
T KOG0351|consen 605 NRLSGVKKFTRLLELVQVVTYCE---------------NETDCRRKQILEYFGEEFDSKHCKKHKTCDNCRESLDVAYEL 669 (941)
T ss_pred ccccchhhccchhhHHHHHHhhc---------------CccchhHHHHHHhcccccchhhccCCchHHHhhcccccchHH
Confidence 1122223 45677899999997 478999999999999982 4666663221 11
Q ss_pred ---HHHHHHHHHHHHhccC-CCCCHHHHHHHHhcC
Q 036378 770 ---PFLRADIKVFLQSNLN-AKFTPRAVARILHGI 800 (815)
Q Consensus 770 ---~~~~~~i~~~l~~~~~-~~~~~~~ia~il~Gi 800 (815)
.....++..++..... .++|...+..++.|.
T Consensus 670 ~d~~~~~~~~~~~v~~~~~~~~~t~~~~~~~~~g~ 704 (941)
T KOG0351|consen 670 RDVTLTALDAHPLVTIYTLSERFTLAAIEDVGGGT 704 (941)
T ss_pred HHHHHHHHHHhhhheeeeccchhhhhhHHhccccc
Confidence 2223333333333221 256666666555553
No 155
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.06 E-value=4.7e-09 Score=112.76 Aligned_cols=108 Identities=19% Similarity=0.084 Sum_probs=90.5
Q ss_pred ccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC-CceE-EEEccccccccccCCccEEEEeCC
Q 036378 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN-KIRV-VVATVAFGMGLDKRDVGAVIHYSL 499 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g-~~~V-LVaT~~~~~GID~p~v~~VI~~d~ 499 (815)
..+.|||..--...+.+.-.|.+.|+.++-+-|+|++..|...++.|+++ .++| ||+-.+.|.-+|+-...+|+..|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 45667777777778888888999999999999999999999999999986 4554 677788899999999999999999
Q ss_pred CCCHHHHHHHHcccCCCCCC--ceEEEEeccc
Q 036378 500 PESLEEYVQEIGRAGRDGRL--SYCHLFLDDI 529 (815)
Q Consensus 500 P~s~~~y~Qr~GRaGR~g~~--g~~i~l~~~~ 529 (815)
=+++.--.|.-.|..|-|+. -.++.|+-+.
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 99999888988888888864 5566665443
No 156
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.01 E-value=2.1e-08 Score=116.25 Aligned_cols=290 Identities=17% Similarity=0.134 Sum_probs=178.3
Q ss_pred CCEEEEcCCChhHHHHHHHHHHH----cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCc
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAI 291 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~----~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~ 291 (815)
.-.++.+|.|||||.+..-++-. ....+|||+-.++|+.+...+++. ++.+........... +....+
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~-------i~~~~~ 122 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI-------IDGRPY 122 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc-------cccccc
Confidence 35678899999999876555433 368899999999999999999986 333222222111110 111135
Q ss_pred eEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHH---HHHHHHHhcccceeEeeecccChhHHH
Q 036378 292 KVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRL---RASLLRARLNVECILAMTATATTTTLR 368 (815)
Q Consensus 292 ~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i---~~~~~~~~~~~~~vl~lSAT~~~~~~~ 368 (815)
+-|++..+.|.... . ..+.++++|||||+--+.. |=|.+..... ...+.........+|++-||+...+.+
T Consensus 123 ~rLivqIdSL~R~~--~--~~l~~yDvVIIDEv~svL~--qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 123 DRLIVQIDSLHRLD--G--SLLDRYDVVIIDEVMSVLN--QLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVD 196 (824)
T ss_pred CeEEEEehhhhhcc--c--ccccccCEEEEehHHHHHH--HHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHH
Confidence 67777777775432 1 1155799999999986653 2232322221 111222233456899999999999988
Q ss_pred HHHHHhcCCccceeeccccCCCe-----eEEEE----------ecCC-ccc------------------hhhhhhHHHHH
Q 036378 369 DVMSALEIPLSNLIQKAQLRDNL-----QLSVS----------LSGN-NRQ------------------NERSAYVDEVF 414 (815)
Q Consensus 369 ~i~~~l~~~~~~~~~~~~~~~~l-----~~~v~----------~~~~-~~~------------------~~~~~~~~~l~ 414 (815)
.+...-+.....++...+..++. .+.-. ...+ ... .....+. .
T Consensus 197 Fl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~---~ 273 (824)
T PF02399_consen 197 FLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF---S 273 (824)
T ss_pred HHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH---H
Confidence 77775554444444332211111 00000 0000 000 0011122 2
Q ss_pred HH-HhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccE
Q 036378 415 SF-HRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA 493 (815)
Q Consensus 415 ~l-~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~ 493 (815)
.+ .....+..+.+|+.|...++.++++.+..+..+..+++.-+..+. +.| ++.+|++=|.+...|+++.+..+
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchhhc
Confidence 22 234456778889999999999999999999999999887766522 223 57899999999999999976543
Q ss_pred --EEEe--CCC--CCHHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 494 --VIHY--SLP--ESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 494 --VI~~--d~P--~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
|.-| .+. .+..+.+|++||+-.- .....+++++..
T Consensus 348 ~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 348 DSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 4433 222 3566789999999554 356666666654
No 157
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.98 E-value=1.6e-08 Score=118.04 Aligned_cols=321 Identities=20% Similarity=0.144 Sum_probs=189.2
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHH---HHHhcCC-
Q 036378 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMID---QLRHLPP- 263 (815)
Q Consensus 191 ~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q---~~~~l~~- 263 (815)
+.-++.+| ++|+=.+.+-.+.-...-++-|.||=||||+..+|+... +.-+.||+-.-=||.- +...+..
T Consensus 71 Ea~~Rvlg---~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~ 147 (822)
T COG0653 71 EASKRVLG---MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEF 147 (822)
T ss_pred HHHHHhcC---CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHH
Confidence 34444556 445556677777778888999999999999999999754 6678888888788764 3444444
Q ss_pred -CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh------hcCcccEEEEecccccc--------
Q 036378 264 -VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT------ATSLISLVVVDEAHCVS-------- 328 (815)
Q Consensus 264 -~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~------~~~~i~~lViDEaH~i~-------- 328 (815)
++..+.+...+...+..... .++|.|+|-..|--......+. ......+.||||+|-++
T Consensus 148 LGlsvG~~~~~m~~~ek~~aY------~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPL 221 (822)
T COG0653 148 LGLSVGVILAGMSPEEKRAAY------ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPL 221 (822)
T ss_pred cCCceeeccCCCChHHHHHHH------hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccce
Confidence 56677777888877777665 4899999998874322111111 13468899999999764
Q ss_pred --ccccCch-HHHHHHHHHHHHHhccc-----------------------------------------------------
Q 036378 329 --EWSHNFR-PSYMRLRASLLRARLNV----------------------------------------------------- 352 (815)
Q Consensus 329 --~~g~~fr-~~~~~i~~~~~~~~~~~----------------------------------------------------- 352 (815)
.|....+ .-|..+ ..+.+.....
T Consensus 222 iISG~~~~~~~~Y~~~-~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~ 300 (822)
T COG0653 222 IISGPAEDSSELYKKV-DDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILF 300 (822)
T ss_pred eeecccccCchHHHHH-HHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHh
Confidence 1311121 112222 2222111000
Q ss_pred ----------------------------------------------------------------ceeEeeecccChhHHH
Q 036378 353 ----------------------------------------------------------------ECILAMTATATTTTLR 368 (815)
Q Consensus 353 ----------------------------------------------------------------~~vl~lSAT~~~~~~~ 368 (815)
..+.+||.|+..+..+
T Consensus 301 ~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~E 380 (822)
T COG0653 301 FRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEE 380 (822)
T ss_pred hcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhh
Confidence 0111111111111100
Q ss_pred HHHHHhcCCccceeeccccCCCeeEEEEecCCccch-hhhhhHHHHHHHH-hhccccceEEEecchHHHHHHHHHHhhCC
Q 036378 369 DVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN-ERSAYVDEVFSFH-RSSKHYYILQISGKHFETDLISRYLCDNS 446 (815)
Q Consensus 369 ~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~-~~~~~~~~l~~l~-~~~~~~~~ivf~~s~~~~e~l~~~L~~~g 446 (815)
+..+..-.++..+..++.+.. ...+.... ....+...+..+. ...++.|+++-+.+.+..+.+.+.|.+.|
T Consensus 381 ----F~~iY~l~vv~iPTnrp~~R~---D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~ 453 (822)
T COG0653 381 ----FDVIYGLDVVVIPTNRPIIRL---DEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAG 453 (822)
T ss_pred ----hhhccCCceeeccCCCcccCC---CCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcC
Confidence 000001111222222222211 01111111 1122222233332 23467899999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCcc-----------EEEEeCCCCCHHHHHHHHcccCC
Q 036378 447 ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVG-----------AVIHYSLPESLEEYVQEIGRAGR 515 (815)
Q Consensus 447 ~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~-----------~VI~~d~P~s~~~y~Qr~GRaGR 515 (815)
++...+.+.-...+-..+-..-..| -|=|||+++|||-|+.--. +||--.--.|..-=-|-.||+||
T Consensus 454 i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGR 531 (822)
T COG0653 454 IPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGR 531 (822)
T ss_pred CCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhccccc
Confidence 9998888877655544444432223 4779999999999985222 35544444455555799999999
Q ss_pred CCCCceEEEEecccc
Q 036378 516 DGRLSYCHLFLDDIT 530 (815)
Q Consensus 516 ~g~~g~~i~l~~~~d 530 (815)
.|-+|..-.|++-+|
T Consensus 532 QGDpG~S~F~lSleD 546 (822)
T COG0653 532 QGDPGSSRFYLSLED 546 (822)
T ss_pred CCCcchhhhhhhhHH
Confidence 999999888887665
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.97 E-value=3.8e-09 Score=118.02 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=75.7
Q ss_pred HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhc--CCceEE-EEccccccccccCCccEEEEeCCCCCHHHHHHHHcc
Q 036378 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS--NKIRVV-VATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGR 512 (815)
Q Consensus 436 e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~--g~~~VL-VaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GR 512 (815)
..+...|.+.|+....+||....++|..+++.|.. |..+|+ +.-.+-|.|+|.-+.+|+|..|+-+++.---|..-|
T Consensus 760 niv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDR 839 (901)
T KOG4439|consen 760 NIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDR 839 (901)
T ss_pred HHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHH
Confidence 33445566678999999999999999999999974 545665 566778999999999999999999999999999999
Q ss_pred cCCCCCCceEEEE
Q 036378 513 AGRDGRLSYCHLF 525 (815)
Q Consensus 513 aGR~g~~g~~i~l 525 (815)
.-|.|+.-.+++.
T Consensus 840 IYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 840 IYRMGQKKDVFIH 852 (901)
T ss_pred HHHhcccCceEEE
Confidence 9999998765543
No 159
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.93 E-value=1.5e-07 Score=104.23 Aligned_cols=298 Identities=14% Similarity=0.174 Sum_probs=191.0
Q ss_pred CCcEEEEcccHHHHHHHHHhcCCCceee-eec--------cCC-----C-------hHHHHHHHHHHhcC----------
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPPVIHGG-FLS--------SSQ-----R-------PEEVAETIRLIQVG---------- 289 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~~~~~~-~i~--------~~~-----~-------~~~~~~~~~~l~~g---------- 289 (815)
.++||||+|+|..|.++++.|.+..... .+. .+. . .......++.+-.|
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 4689999999999999999887743331 000 000 0 00011122223233
Q ss_pred --------------CceEEEeChhhhhchhhh-----hhhhhcCcccEEEEecccccc--ccccC--------------c
Q 036378 290 --------------AIKVLFVSPERFLNADFL-----SIFTATSLISLVVVDEAHCVS--EWSHN--------------F 334 (815)
Q Consensus 290 --------------~~~Ili~TPe~L~~~~~~-----~~~~~~~~i~~lViDEaH~i~--~~g~~--------------f 334 (815)
+.||||+||=-|...+-. .....++.|.++|||.||.+. .|.|- .
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~ 196 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSH 196 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCC
Confidence 367999999877643331 223337899999999999886 35220 0
Q ss_pred hHHHHHHHHHHHHHh-cccceeEeeecccChhHHHHHHHHhcCCccce-eec--------cccCCCeeEEEEec--CCcc
Q 036378 335 RPSYMRLRASLLRAR-LNVECILAMTATATTTTLRDVMSALEIPLSNL-IQK--------AQLRDNLQLSVSLS--GNNR 402 (815)
Q Consensus 335 r~~~~~i~~~~~~~~-~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~-~~~--------~~~~~~l~~~v~~~--~~~~ 402 (815)
..++.++....+... ..-+|+|++|+..+++....+...+......+ +.. ......+....... .+..
T Consensus 197 ~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~ 276 (442)
T PF06862_consen 197 DTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPA 276 (442)
T ss_pred CCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcc
Confidence 022333322222111 12359999999999998776666443221111 100 11122222222221 1111
Q ss_pred c--hhhh-hhHHHHHHHHh-hccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEE
Q 036378 403 Q--NERS-AYVDEVFSFHR-SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA 478 (815)
Q Consensus 403 ~--~~~~-~~~~~l~~l~~-~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVa 478 (815)
. ..+- .+...+.-.+. ......++||+.+--+--.|-++|++.++....+|--.+..+-.+.-..|..|+.+||+-
T Consensus 277 ~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~ 356 (442)
T PF06862_consen 277 DDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLY 356 (442)
T ss_pred hhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEE
Confidence 1 1111 12222222222 445678999999999999999999999999999999999999999999999999999999
Q ss_pred cccc--ccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCC------CceEEEEeccccHHHHHHhh
Q 036378 479 TVAF--GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR------LSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 479 T~~~--~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~------~g~~i~l~~~~d~~~l~~~~ 538 (815)
|.=+ =+=..+.+|+.||.|++|..+.=|...++-.+.... .+.|.++|+.-|...|++++
T Consensus 357 TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 357 TERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred EhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 9853 455778899999999999999888766655544432 58999999999999998886
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.88 E-value=7.8e-08 Score=119.65 Aligned_cols=107 Identities=23% Similarity=0.236 Sum_probs=94.9
Q ss_pred ceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC--CceEEEEccccccccccCCccEEEEeCCCC
Q 036378 424 YILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN--KIRVVVATVAFGMGLDKRDVGAVIHYSLPE 501 (815)
Q Consensus 424 ~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g--~~~VLVaT~~~~~GID~p~v~~VI~~d~P~ 501 (815)
++++|+......+.+...|...++....++|+++.+.|...+++|.++ ..-+++.|.+.|.|+|.-..++||+||..+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 799999999999999999999999999999999999999999999986 455677788999999999999999999999
Q ss_pred CHHHHHHHHcccCCCCCCceEEE--Eecccc
Q 036378 502 SLEEYVQEIGRAGRDGRLSYCHL--FLDDIT 530 (815)
Q Consensus 502 s~~~y~Qr~GRaGR~g~~g~~i~--l~~~~d 530 (815)
+.....|...|+.|.|+...+.+ ++....
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 99999999999999998765544 444443
No 161
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.87 E-value=5.3e-08 Score=108.68 Aligned_cols=110 Identities=21% Similarity=0.188 Sum_probs=97.2
Q ss_pred cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCc-eEEEEccccccccccCCccEEEEeCC
Q 036378 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKI-RVVVATVAFGMGLDKRDVGAVIHYSL 499 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~-~VLVaT~~~~~GID~p~v~~VI~~d~ 499 (815)
.+.++++|+.-.+..+.+.++|...++....+.|.....+|..+..+|+..++ -.|++|-+.|-|||+...+.||.||.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 35788999999999999999999999999999999999999999999998655 45789999999999999999999999
Q ss_pred CCCHHHHHHHHcccCCCCCCce--EEEEecccc
Q 036378 500 PESLEEYVQEIGRAGRDGRLSY--CHLFLDDIT 530 (815)
Q Consensus 500 P~s~~~y~Qr~GRaGR~g~~g~--~i~l~~~~d 530 (815)
-+++..-.|...||.|-|+.-. +|-++....
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred CCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 9999999999999999998644 555555443
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.87 E-value=7.9e-09 Score=95.97 Aligned_cols=134 Identities=19% Similarity=0.129 Sum_probs=76.9
Q ss_pred cCCCEEEEcCCChhHHHHHHHH----HHHcCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCC
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIP----AMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGA 290 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp----~l~~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~ 290 (815)
+|+-.++-+.+|+|||--.+-- ++..+.++|||.|||.++..+.+.|+.. + .......... -..|.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~-~-~~~~t~~~~~--------~~~g~ 72 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL-P-VRFHTNARMR--------THFGS 72 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS-S-EEEESTTSS------------SS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC-C-cccCceeeec--------cccCC
Confidence 3556788999999999743322 3456899999999999999999999863 2 2222222111 11245
Q ss_pred ceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhH
Q 036378 291 IKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366 (815)
Q Consensus 291 ~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~ 366 (815)
.-|-++|...+...+.. ... ..++++||+||+|..--+.-.+|...... .......+|+|||||+...
T Consensus 73 ~~i~vMc~at~~~~~~~-p~~-~~~yd~II~DEcH~~Dp~sIA~rg~l~~~------~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLN-PCR-LKNYDVIIMDECHFTDPTSIAARGYLREL------AESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp SSEEEEEHHHHHHHHHT-SSC-TTS-SEEEECTTT--SHHHHHHHHHHHHH------HHTTS-EEEEEESS-TT--
T ss_pred CcccccccHHHHHHhcC-ccc-ccCccEEEEeccccCCHHHHhhheeHHHh------hhccCeeEEEEeCCCCCCC
Confidence 67778888877655433 333 67899999999998643321222211111 1223357999999998764
No 163
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.83 E-value=2.6e-08 Score=106.64 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=53.5
Q ss_pred cCCCCCCHHHHHHHH----HHHcCCCEEEEcCCChhHHHHHHHHHHHc----CC-----cEEEEcccHHHHHHHHHhcCC
Q 036378 197 YGYDSFRDGQLEAIK----MVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PG-----LTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~----~il~g~d~li~apTGsGKTl~~~lp~l~~----~~-----~~lVl~P~~~L~~q~~~~l~~ 263 (815)
|.|. ++|.|.+.+. .+..|+++++.+|||+|||++|++|++.. +. ++++.++|.+++.|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 6676 4999999554 45568899999999999999999999732 33 799999999998887666644
No 164
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.83 E-value=2.6e-08 Score=106.64 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=53.5
Q ss_pred cCCCCCCHHHHHHHH----HHHcCCCEEEEcCCChhHHHHHHHHHHHc----CC-----cEEEEcccHHHHHHHHHhcCC
Q 036378 197 YGYDSFRDGQLEAIK----MVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PG-----LTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~----~il~g~d~li~apTGsGKTl~~~lp~l~~----~~-----~~lVl~P~~~L~~q~~~~l~~ 263 (815)
|.|. ++|.|.+.+. .+..|+++++.+|||+|||++|++|++.. +. ++++.++|.+++.|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 6676 4999999554 45568899999999999999999999732 33 799999999998887666644
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.79 E-value=4.7e-09 Score=113.30 Aligned_cols=157 Identities=22% Similarity=0.218 Sum_probs=92.6
Q ss_pred HHHHHHHHHHc-------------CCCEEEEcCCChhHHHHHHHHHHH---cC-----CcEEEEcccHHHHHHHHHhcCC
Q 036378 205 GQLEAIKMVLD-------------KKSTMLVLPTGAGKSLCYQIPAMI---LP-----GLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 205 ~Q~~ai~~il~-------------g~d~li~apTGsGKTl~~~lp~l~---~~-----~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
+|.+++..++. .+.+|+.-++|+|||+..+..+.. .. ..+|||+|. ++..+|..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 46666666532 357888899999999877655541 11 149999999 888999999988
Q ss_pred Ccee-----eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhh---chhhhhhhhhcCcccEEEEeccccccccccCch
Q 036378 264 VIHG-----GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFL---NADFLSIFTATSLISLVVVDEAHCVSEWSHNFR 335 (815)
Q Consensus 264 ~~~~-----~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~---~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr 335 (815)
.... ....... ..... ..-.....+++|+|.+.+. .......+. ..++++|||||+|.+..++.
T Consensus 80 ~~~~~~~~v~~~~~~~---~~~~~-~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~-~~~~~~vIvDEaH~~k~~~s--- 151 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDS---ERRRL-SKNQLPKYDVVITTYETLRKARKKKDKEDLK-QIKWDRVIVDEAHRLKNKDS--- 151 (299)
T ss_dssp HSGT-TS-EEEESSSC---HHHHT-TSSSCCCSSEEEEEHHHHH--TSTHTTHHHH-TSEEEEEEETTGGGGTTTTS---
T ss_pred cccccccccccccccc---ccccc-cccccccceeeeccccccccccccccccccc-cccceeEEEecccccccccc---
Confidence 5421 2222211 11111 1112245789999999998 122223333 23599999999999954311
Q ss_pred HHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcC
Q 036378 336 PSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEI 376 (815)
Q Consensus 336 ~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~ 376 (815)
..+ ..+.. .....++++||||......++...+.+
T Consensus 152 ~~~-----~~l~~-l~~~~~~lLSgTP~~n~~~dl~~~l~~ 186 (299)
T PF00176_consen 152 KRY-----KALRK-LRARYRWLLSGTPIQNSLEDLYSLLRF 186 (299)
T ss_dssp HHH-----HHHHC-CCECEEEEE-SS-SSSGSHHHHHHHHH
T ss_pred ccc-----ccccc-cccceEEeeccccccccccccccchhe
Confidence 111 22223 336678999999999887777766543
No 166
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.75 E-value=3.1e-09 Score=120.73 Aligned_cols=349 Identities=15% Similarity=0.081 Sum_probs=244.8
Q ss_pred cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccccc------ccccCCccEE
Q 036378 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM------GLDKRDVGAV 494 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~------GID~p~v~~V 494 (815)
..+.++|+..-..-.+.=.+.|+..|+.+..+|+.++.++|..++..+..|++++|.-++---+ =|.--.+..+
T Consensus 56 ~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~ 135 (590)
T COG0514 56 LEGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLV 135 (590)
T ss_pred cCCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceE
Confidence 3567888877777777777888999999999999999999999999999999999876642211 1111122222
Q ss_pred EEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhh---------cCCCCHHHHHHHHHHHhhcCCCCCCC
Q 036378 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY---------SDGVDEYAINKFLCQVFTNGMNSHGK 565 (815)
Q Consensus 495 I~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~---------~~~~~~~~i~~~l~~~~~~~~~~~~~ 565 (815)
+. +-.|.+-..|-|-++. +..+..+.. -+......+...|.+.+...... -.
T Consensus 136 vI--------DEAHCiSqWGhdFRP~----------Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~-~~ 196 (590)
T COG0514 136 AI--------DEAHCISQWGHDFRPD----------YRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDAN-IF 196 (590)
T ss_pred Ee--------chHHHHhhcCCccCHh----------HHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcc-eE
Confidence 22 3455555555554443 222222221 11233345566666666554321 22
Q ss_pred eeecchhHHHHHhCCC---HHHHHHHHHHHH-hcCcccEEeccccccceEEEecCCchhhhhhhHHHHHHHHhhCCcCCc
Q 036378 566 LCSLVKESASRKFDIK---EEVMLTLLTCLE-LGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQG 641 (815)
Q Consensus 566 ~~~~~~~~~~~~~~~~---~~~~~~~l~~le-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~ 641 (815)
..+|++.++.-++... ...+..+...++ ....||||+.++..++..-.++...+...+.||+++....|.. .+.
T Consensus 197 ~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~--~q~ 274 (590)
T COG0514 197 RGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERER--VQQ 274 (590)
T ss_pred EecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHH--HHH
Confidence 3578888876555442 333333332122 2346899999999988877777766666778898888887765 344
Q ss_pred eeeeC-----HHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE--------ecCceEEEEEeCC-CchhhhhHHHHHHHHHH
Q 036378 642 QYVFD-----IPTVANSIGATTIDVSNQLLNLKMRGEITYE--------LKDPAYCYTIVEV-PSDFCALSAHLTKWLSE 707 (815)
Q Consensus 642 ~~~~~-----~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 707 (815)
.|..+ ++|+|++|||++++|+.++|+-.+..+++|+ ++.++.+++++.+ |........+..+...+
T Consensus 275 ~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~~~~ 354 (590)
T COG0514 275 AFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKPDEE 354 (590)
T ss_pred HHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcchHH
Confidence 44433 8999999999999999999999999999998 8899999999997 66655655555554566
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCchHHHHHHhcccCCCC--CCCCCc-cCC---CC-cHHHHHHHHHHH
Q 036378 708 VENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD--NCDVPN-KIG---QS-SPFLRADIKVFL 780 (815)
Q Consensus 708 ~e~~~~~kl~~m~~y~~~~~~~~~~~~~~~~~~~~~cl~~~ll~YFge~~--~c~~c~-~~~---~~-~~~~~~~i~~~l 780 (815)
+++.+..||++|+.|++ ...|++..|++||||+. .|.+|. |.. .. -+..++++++++
T Consensus 355 ~~~~~~~kl~~~~~~~e----------------~~~crr~~ll~yfge~~~~~c~~c~~c~~~~~~~d~t~~a~~~ls~~ 418 (590)
T COG0514 355 QKQIELAKLRQMIAYCE----------------TQTCRRLVLLKYFGEDEPEPCGNCDNCLDTPKQFDGTIEAQKVLSCI 418 (590)
T ss_pred HHHHHHHHHHHHHHhcc----------------cccchHHHHHHhcCccccccccCCCcccCcchhcchHHHHHHHHHhH
Confidence 77888899999999995 45599999999999972 454444 322 22 256777899999
Q ss_pred HhccCCCCCHHHHHHHHhcCCCCccch
Q 036378 781 QSNLNAKFTPRAVARILHGIASPAYPS 807 (815)
Q Consensus 781 ~~~~~~~~~~~~ia~il~Gi~sp~~~~ 807 (815)
.+..+ +++...++.+++|.++-+...
T Consensus 419 ~r~~~-~~~~~~~~~~l~g~~~~~~~~ 444 (590)
T COG0514 419 YRMGQ-RFGVGYVIDVLRGSKNLKIRL 444 (590)
T ss_pred hhhhh-hhhHHHHHHHHhcccchhhhh
Confidence 88764 799999999999988876655
No 167
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.74 E-value=2.5e-08 Score=114.04 Aligned_cols=316 Identities=15% Similarity=0.099 Sum_probs=191.1
Q ss_pred HHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH---HcC-----CcEEEEcccHHHHHHHHHhcCCC--ceeeeeccCCCh
Q 036378 207 LEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM---ILP-----GLTLVVCPLVALMIDQLRHLPPV--IHGGFLSSSQRP 276 (815)
Q Consensus 207 ~~ai~~il~g~d~li~apTGsGKTl~~~lp~l---~~~-----~~~lVl~P~~~L~~q~~~~l~~~--~~~~~i~~~~~~ 276 (815)
.+++.++..+..+++.+.||+|||.-+.--+| ... .-+.|--|++-.+.-+.+++... -....+.+.. .
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~-v 462 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYN-V 462 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccc-c
Confidence 45666677788889999999999975544443 332 23677788887777777776541 0001110000 0
Q ss_pred HHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeE
Q 036378 277 EEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECIL 356 (815)
Q Consensus 277 ~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl 356 (815)
+. ........--|+++|-+-+++..... +..+.++++||.|.. +-..+++.++.+-+....+...++
T Consensus 463 --Rf--~Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiher-----dv~~dfll~~lr~m~~ty~dl~v~ 529 (1282)
T KOG0921|consen 463 --RF--DSATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHER-----DVDTDFVLIVLREMISTYRDLRVV 529 (1282)
T ss_pred --cc--cccccccccceeeeccchhhhhhhhc----ccccccccchhhhhh-----ccchHHHHHHHHhhhccchhhhhh
Confidence 00 00001112368999999988765443 457899999999987 445566666555556666677788
Q ss_pred eeecccChhHHHHHHHH--------------------hcCCccceeeccccCC--CeeEEEEecCC-ccc----------
Q 036378 357 AMTATATTTTLRDVMSA--------------------LEIPLSNLIQKAQLRD--NLQLSVSLSGN-NRQ---------- 403 (815)
Q Consensus 357 ~lSAT~~~~~~~~i~~~--------------------l~~~~~~~~~~~~~~~--~l~~~v~~~~~-~~~---------- 403 (815)
++|||+..+....+... +..+...+......+. ...-......+ +.+
T Consensus 530 lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~ 609 (1282)
T KOG0921|consen 530 LMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSY 609 (1282)
T ss_pred hhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhh
Confidence 88888776543222111 0000000000000000 00000000000 000
Q ss_pred --h---------hhhhhHHHHHHHHhhc----cccceEEEecchHHHHHHHHHHhhC-------CCcEEEecCCCCHHHH
Q 036378 404 --N---------ERSAYVDEVFSFHRSS----KHYYILQISGKHFETDLISRYLCDN-------SISVKSYHSGIPAKDR 461 (815)
Q Consensus 404 --~---------~~~~~~~~l~~l~~~~----~~~~~ivf~~s~~~~e~l~~~L~~~-------g~~v~~~h~~~~~~~R 461 (815)
. ........+..++... -.+.+++|.......-.|...|... ...+...|+.+...+.
T Consensus 610 ~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eq 689 (1282)
T KOG0921|consen 610 NESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQ 689 (1282)
T ss_pred cchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhh
Confidence 0 0000011122222111 1345678877777777777777542 4578889999999999
Q ss_pred HHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCC------------------CCHHHHHHHHcccCCCCCCceEE
Q 036378 462 SRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------------------ESLEEYVQEIGRAGRDGRLSYCH 523 (815)
Q Consensus 462 ~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P------------------~s~~~y~Qr~GRaGR~g~~g~~i 523 (815)
.++.+....|..++|+.|+.+...|.+.++.+||..+.- .|..+..||.||+||. ++|.|.
T Consensus 690 rkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f 768 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCF 768 (1282)
T ss_pred hhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccc
Confidence 999999999999999999999999999999998864432 1556779999999998 799999
Q ss_pred EEeccccHHHHHHh
Q 036378 524 LFLDDITYFRLRSL 537 (815)
Q Consensus 524 ~l~~~~d~~~l~~~ 537 (815)
.+....-+..+...
T Consensus 769 ~lcs~arF~~l~~~ 782 (1282)
T KOG0921|consen 769 HLCSRARFEALEDH 782 (1282)
T ss_pred cccHHHHHHHHHhc
Confidence 99988776666554
No 168
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.66 E-value=1e-06 Score=108.26 Aligned_cols=330 Identities=16% Similarity=0.141 Sum_probs=178.8
Q ss_pred hhhhHHHHHHHHHhcCCC------CCCHHHHHHHHHHH--------c------CCCEEEEcCCChhHHHHHHHHHH----
Q 036378 183 EASDENLGRLLRLVYGYD------SFRDGQLEAIKMVL--------D------KKSTMLVLPTGAGKSLCYQIPAM---- 238 (815)
Q Consensus 183 ~~~~~~l~~~l~~~~g~~------~~~~~Q~~ai~~il--------~------g~d~li~apTGsGKTl~~~lp~l---- 238 (815)
-...+.+.++++.+.=|. ..+++|..+-..+. . ++..++.=-||||||++....+-
T Consensus 220 ~l~~~~ll~~i~~f~vf~~~~~~~~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~ 299 (962)
T COG0610 220 FLAPERLLDIIRNFIVFDKSDDGLVKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLE 299 (962)
T ss_pred HhCHHHHHHHHHheEEEeecCCcccchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHh
Confidence 334567777777765555 34455444333222 1 34589999999999987655542
Q ss_pred -HcCCcEEEEcccHHHHHHHHHhcCCCceeeeec-cCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhh-hhhcCc
Q 036378 239 -ILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLS-SSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI-FTATSL 315 (815)
Q Consensus 239 -~~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~-~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~-~~~~~~ 315 (815)
...+.++||+-.+.|-.|..+.+..+-...... ...+..+..+. +..+.-.|+|+|-..|........ ...-.+
T Consensus 300 ~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~---l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~ 376 (962)
T COG0610 300 LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKEL---LEDGKGKIIVTTIQKFNKAVKEDELELLKRK 376 (962)
T ss_pred ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHH---HhcCCCcEEEEEecccchhhhcccccccCCC
Confidence 236789999999999999999998853332221 23333343333 333445899999999876543331 111123
Q ss_pred ccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHH-HHHHhcCCccceeeccccCC----C
Q 036378 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD-VMSALEIPLSNLIQKAQLRD----N 390 (815)
Q Consensus 316 i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~-i~~~l~~~~~~~~~~~~~~~----~ 390 (815)
=-.||+||||+- +.|. . ...++..++....++||+||....-.. -...++............++ +
T Consensus 377 ~ivvI~DEaHRS-Q~G~--------~-~~~~~~~~~~a~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~ 446 (962)
T COG0610 377 NVVVIIDEAHRS-QYGE--------L-AKLLKKALKKAIFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLP 446 (962)
T ss_pred cEEEEEechhhc-cccH--------H-HHHHHHHhccceEEEeeCCccccccccchhhhhcceeEEEecchhhccCceee
Confidence 346788999974 3321 2 233455566688999999997654443 12233332222222222221 2
Q ss_pred eeEEEE-ecC---Cccchh---hhh---------------------hH------------HHHHHHHh-hccccceEEEe
Q 036378 391 LQLSVS-LSG---NNRQNE---RSA---------------------YV------------DEVFSFHR-SSKHYYILQIS 429 (815)
Q Consensus 391 l~~~v~-~~~---~~~~~~---~~~---------------------~~------------~~l~~l~~-~~~~~~~ivf~ 429 (815)
+.+... ... ...... ... .. ........ .....++++.+
T Consensus 447 i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~ 526 (962)
T COG0610 447 VYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVA 526 (962)
T ss_pred EEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEE
Confidence 222211 000 000000 000 00 00011111 22345667777
Q ss_pred cchHHHHHHHHHHhhCC-----------------------CcEEEecCCCCHHHHHHHHHH--HhcCCceEEEEcccccc
Q 036378 430 GKHFETDLISRYLCDNS-----------------------ISVKSYHSGIPAKDRSRIQEL--FCSNKIRVVVATVAFGM 484 (815)
Q Consensus 430 ~s~~~~e~l~~~L~~~g-----------------------~~v~~~h~~~~~~~R~~i~~~--F~~g~~~VLVaT~~~~~ 484 (815)
.+++.+..+++...... ......|..... .+.....+ ......++||.++++-.
T Consensus 527 ~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~d~~kilIV~dmlLT 605 (962)
T COG0610 527 SSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLKD-EKKDLIKRFKLKDDPLDLLIVVDMLLT 605 (962)
T ss_pred echHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHHH-HHhhhhhhhcCcCCCCCEEEEEccccc
Confidence 77775544444433210 000001222222 22333334 34568999999999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHHcccCCC--C-CC-ceEEEEec
Q 036378 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD--G-RL-SYCHLFLD 527 (815)
Q Consensus 485 GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~--g-~~-g~~i~l~~ 527 (815)
|.|-|-..++. .|-|.---..+|.+-|+-|. + ++ |..+-|..
T Consensus 606 GFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 606 GFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred cCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 99999766654 45555445789999999995 3 23 55555554
No 169
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.58 E-value=6.3e-09 Score=121.17 Aligned_cols=228 Identities=15% Similarity=0.152 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEcCCChhHHHHHHHHHHHc-----CCcEEEEcccHHHHHHHHHhcCC-----Cceeee
Q 036378 201 SFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMIL-----PGLTLVVCPLVALMIDQLRHLPP-----VIHGGF 269 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~-g~d~li~apTGsGKTl~~~lp~l~~-----~~~~lVl~P~~~L~~q~~~~l~~-----~~~~~~ 269 (815)
.|.|+|.+++..+.. ..++++.+|||+|||++|.+.+... +.++++|+|..+|+..-++.+.+ +++...
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 566777776655443 4578999999999999999887643 67899999999999987777765 333333
Q ss_pred eccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhh--hhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHH
Q 036378 270 LSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF--LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR 347 (815)
Q Consensus 270 i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~--~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~ 347 (815)
..+....+ ...+. +.+++|+||+++..... ...-. +.+++++|+||.||+.+ +.-|-...+....-.
T Consensus 1007 ~tgd~~pd-----~~~v~--~~~~~ittpek~dgi~Rsw~~r~~-v~~v~~iv~de~hllg~---~rgPVle~ivsr~n~ 1075 (1230)
T KOG0952|consen 1007 LTGDVTPD-----VKAVR--EADIVITTPEKWDGISRSWQTRKY-VQSVSLIVLDEIHLLGE---DRGPVLEVIVSRMNY 1075 (1230)
T ss_pred ccCccCCC-----hhhee--cCceEEcccccccCccccccchhh-hccccceeecccccccC---CCcceEEEEeecccc
Confidence 43333332 11222 57999999999876432 33333 67899999999999975 322222222111000
Q ss_pred ---HhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhH--HHHHHHHhhccc
Q 036378 348 ---ARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYV--DEVFSFHRSSKH 422 (815)
Q Consensus 348 ---~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~--~~l~~l~~~~~~ 422 (815)
......+++++|- + .....++.+|++......+.....+.++...+.-....-...+.... .....+......
T Consensus 1076 ~s~~t~~~vr~~glst-a-~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~ 1153 (1230)
T KOG0952|consen 1076 ISSQTEEPVRYLGLST-A-LANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPI 1153 (1230)
T ss_pred CccccCcchhhhhHhh-h-hhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCC
Confidence 1111223333332 1 22346788999887664343333334444444333321111111000 122344555667
Q ss_pred cceEEEecchHHHHHHHHH
Q 036378 423 YYILQISGKHFETDLISRY 441 (815)
Q Consensus 423 ~~~ivf~~s~~~~e~l~~~ 441 (815)
.+.++|+.+++.+..-+.-
T Consensus 1154 ~p~lifv~srrqtrlta~~ 1172 (1230)
T KOG0952|consen 1154 KPVLIFVSSRRQTRLTALD 1172 (1230)
T ss_pred CceEEEeecccccccchHh
Confidence 8999998888766544433
No 170
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=2e-06 Score=93.94 Aligned_cols=332 Identities=16% Similarity=0.164 Sum_probs=194.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEE-cCCChhH--HHHHHHHHHHc----------------------------------CC
Q 036378 200 DSFRDGQLEAIKMVLDKKSTMLV-LPTGAGK--SLCYQIPAMIL----------------------------------PG 242 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d~li~-apTGsGK--Tl~~~lp~l~~----------------------------------~~ 242 (815)
..+|+.|.+.+..+.+-+|++.. +.-+.|+ +-+|.+-++.+ .+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 47899999999999999998754 2234455 34566666532 25
Q ss_pred cEEEEcccHHHHHHHHHhcCCCceeeee---------------cc----CCChHHHHHHHHHHhc---------------
Q 036378 243 LTLVVCPLVALMIDQLRHLPPVIHGGFL---------------SS----SQRPEEVAETIRLIQV--------------- 288 (815)
Q Consensus 243 ~~lVl~P~~~L~~q~~~~l~~~~~~~~i---------------~~----~~~~~~~~~~~~~l~~--------------- 288 (815)
+||||+|+++-|..+++.|...+.+..- .+ ...........+.+-.
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 7999999999999999888653221100 00 0000001111111211
Q ss_pred ---------CCceEEEeChhhhhchhh-----hhhhhhcCcccEEEEeccccccc--cccCchHHHHHHHHHHHHHhc--
Q 036378 289 ---------GAIKVLFVSPERFLNADF-----LSIFTATSLISLVVVDEAHCVSE--WSHNFRPSYMRLRASLLRARL-- 350 (815)
Q Consensus 289 ---------g~~~Ili~TPe~L~~~~~-----~~~~~~~~~i~~lViDEaH~i~~--~g~~fr~~~~~i~~~~~~~~~-- 350 (815)
-..+||||+|=-|.-.+- ......++.|.++|||-||.+.. |.| ...++..+ ...+
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-----l~~ifdHL-n~~P~k 448 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-----LLHIFDHL-NLQPSK 448 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-----HHHHHHHh-hcCccc
Confidence 246899999976643322 22233377899999999998863 422 11111111 1110
Q ss_pred -------------------ccceeEeeecccChhHHHHHHHHhcCCccc-----eeeccccCCCeeEEE------EecCC
Q 036378 351 -------------------NVECILAMTATATTTTLRDVMSALEIPLSN-----LIQKAQLRDNLQLSV------SLSGN 400 (815)
Q Consensus 351 -------------------~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~v------~~~~~ 400 (815)
.-.|+|++|+--.+..-..+......-... +.... .-.++.+.+ ....+
T Consensus 449 ~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~g-si~~v~~~l~Qvf~ri~~~s 527 (698)
T KOG2340|consen 449 QHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGG-SISNVGIPLCQVFQRIEVKS 527 (698)
T ss_pred ccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCC-chhhccchhhhhhhheeccC
Confidence 113667777765554333232222111111 11110 111111111 11111
Q ss_pred ccch--hh-hhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEE
Q 036378 401 NRQN--ER-SAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVV 477 (815)
Q Consensus 401 ~~~~--~~-~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLV 477 (815)
.... .+ ..++..+.--+.......++++..+--.--.+-+++++.++....+|-=-+...-.+.-+-|..|...||+
T Consensus 528 i~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlL 607 (698)
T KOG2340|consen 528 IIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLL 607 (698)
T ss_pred cccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEE
Confidence 1111 11 11112111111111234578999999899999999999988877777665556666777889999999999
Q ss_pred Eccc--cccccccCCccEEEEeCCCCCHHHH---HHHHcccCCCC----CCceEEEEeccccHHHHHHhh
Q 036378 478 ATVA--FGMGLDKRDVGAVIHYSLPESLEEY---VQEIGRAGRDG----RLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 478 aT~~--~~~GID~p~v~~VI~~d~P~s~~~y---~Qr~GRaGR~g----~~g~~i~l~~~~d~~~l~~~~ 538 (815)
-|.- +-+--++.+|+.||.|.+|..+.-| +.+.+|+.-.| ....|.++|++-|...|..++
T Consensus 608 yTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 608 YTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred EehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 9985 4567899999999999999988766 55556654333 347899999999988887765
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.50 E-value=1e-06 Score=92.04 Aligned_cols=129 Identities=20% Similarity=0.210 Sum_probs=90.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcCC----
Q 036378 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLPP---- 263 (815)
Q Consensus 191 ~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~---- 263 (815)
+..++.+|+ .|++.|.-++-.+..|+ |+.+.||-|||++..+|++.. +..|-||+..--|+..-++.+..
T Consensus 68 ea~~r~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 68 EAARRTLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp HHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 445555664 58888888887776666 999999999999999988643 77899999999999977776665
Q ss_pred -CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh------hcCcccEEEEecccccc
Q 036378 264 -VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT------ATSLISLVVVDEAHCVS 328 (815)
Q Consensus 264 -~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~------~~~~i~~lViDEaH~i~ 328 (815)
++..+.+.......++.... .++|+|+|...+.-....+.+. ......++||||+|.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAY------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHHH------hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 45666676666665555444 3789999999886433322221 13578999999999875
No 172
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.49 E-value=6.3e-06 Score=95.18 Aligned_cols=104 Identities=18% Similarity=0.148 Sum_probs=88.6
Q ss_pred ccceEEEecchHHHHHHHHHHhh----------------------CCCcEEEecCCCCHHHHHHHHHHHhcCC----ceE
Q 036378 422 HYYILQISGKHFETDLISRYLCD----------------------NSISVKSYHSGIPAKDRSRIQELFCSNK----IRV 475 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~----------------------~g~~v~~~h~~~~~~~R~~i~~~F~~g~----~~V 475 (815)
+.+.+||..+-...+.+..+|.. .|.....+.|.....+|....+.|.+-. .-.
T Consensus 1142 GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~ 1221 (1567)
T KOG1015|consen 1142 GDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLF 1221 (1567)
T ss_pred cceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEE
Confidence 56789999888888888888863 2556778889999999999999998732 237
Q ss_pred EEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEE
Q 036378 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLF 525 (815)
Q Consensus 476 LVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l 525 (815)
||+|-|.+-|||+-..+-||.||..|++.--.|-+=|+-|.|+.--||++
T Consensus 1222 LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1222 LISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 89999999999999999999999999998889999999999987555543
No 173
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.32 E-value=1e-07 Score=101.11 Aligned_cols=298 Identities=13% Similarity=0.071 Sum_probs=163.3
Q ss_pred ccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC--CceEEEEcc------cccc---cccc
Q 036378 420 SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN--KIRVVVATV------AFGM---GLDK 488 (815)
Q Consensus 420 ~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g--~~~VLVaT~------~~~~---GID~ 488 (815)
..++-+|||..-..-...-.+.|....+.+..+++.|+..||.+++-++... .+++|--|+ .|.- |+-.
T Consensus 59 ~~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~ 138 (641)
T KOG0352|consen 59 VHGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN 138 (641)
T ss_pred HhCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh
Confidence 3455677887777777877888999999999999999999999999999875 456765554 2221 2222
Q ss_pred CC-ccEEEEeCCCCCHHHHHHHHcccCCCCCCce--------------EEEEeccccHHHHHHhhhcCCCCHHHHHHHHH
Q 036378 489 RD-VGAVIHYSLPESLEEYVQEIGRAGRDGRLSY--------------CHLFLDDITYFRLRSLMYSDGVDEYAINKFLC 553 (815)
Q Consensus 489 p~-v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~--------------~i~l~~~~d~~~l~~~~~~~~~~~~~i~~~l~ 553 (815)
.+ .++++. +-.|.+...|.|-++.+ ++-|........-+. |...|.
T Consensus 139 r~~L~Y~vV--------DEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqED-----------i~~qL~ 199 (641)
T KOG0352|consen 139 RDVLRYIVV--------DEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQED-----------IAFQLK 199 (641)
T ss_pred hceeeeEEe--------chhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHH-----------HHHHHh
Confidence 22 122221 34566666666655422 222221111111111 111110
Q ss_pred -----HHhhcCCCCCCCeeecchhHHH-HHhCCCHHHHHHHHHHHH-----------hcCcccEEeccccccceEEEecC
Q 036378 554 -----QVFTNGMNSHGKLCSLVKESAS-RKFDIKEEVMLTLLTCLE-----------LGEIQYLQLLPELKVTCTLNFHK 616 (815)
Q Consensus 554 -----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~le-----------~~~~~~i~~~~~~~~~~~~~~~~ 616 (815)
.+|....--.+-.++...+++. ..+. ......+..|- ..+-||+|+.++...+-.---+.
T Consensus 200 L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~---~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~ 276 (641)
T KOG0352|consen 200 LRNPVAIFKTPTFRDNLFYDNHMKSFITDCLT---VLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE 276 (641)
T ss_pred hcCcHHhccCcchhhhhhHHHHHHHHhhhHhH---hHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh
Confidence 0111100000000000000000 0000 00012222222 11346777766643321111111
Q ss_pred CchhhhhhhHHHHHHHHhhCCcCCcee-e----eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE--------ecCceE
Q 036378 617 TTPTLLADKDKMVATILKKSETKQGQY-V----FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE--------LKDPAY 683 (815)
Q Consensus 617 ~~~~~~~~~~~~~~~~lr~~~~~~~~~-~----~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~--------~~~~~~ 683 (815)
-.+.....||++++.-.|.. .+..| . +=.+|++++||+++.+|++++|+-..+++..|+ ++.+++
T Consensus 277 ~~Gi~A~AYHAGLK~~ERTe--VQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~Sy 354 (641)
T KOG0352|consen 277 IAGIPAMAYHAGLKKKERTE--VQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSY 354 (641)
T ss_pred hcCcchHHHhcccccchhHH--HHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccc
Confidence 11222335888888877765 22222 1 226899999999999999999999999999888 677899
Q ss_pred EEEEeCC-CchhhhhH--HHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCchHHHHHHhcccCC
Q 036378 684 CYTIVEV-PSDFCALS--AHLTKWLSE-----VENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRG 755 (815)
Q Consensus 684 ~~~~~~~-~~~~~~~~--~~~~~~~~~-----~e~~~~~kl~~m~~y~~~~~~~~~~~~~~~~~~~~~cl~~~ll~YFge 755 (815)
|-+.+.+ |.+...+. .++.+.... .-+.-+...++|..|++ ...|+...|..|||+
T Consensus 355 CRLYYsR~D~~~i~FLi~~e~aklrek~~ke~~~k~~I~~F~k~~eFCE----------------~~~CRH~~ia~fFgD 418 (641)
T KOG0352|consen 355 CRLYYSRQDKNALNFLVSGELAKLREKAKKEMQIKSIITGFAKMLEFCE----------------SARCRHVSIASFFDD 418 (641)
T ss_pred eeeeecccchHHHHHHHhhHHHHHHHhcchhhhHHHHHHHHHHHHHHHH----------------HcccchHHHHHhcCC
Confidence 9888866 55544433 222222111 12234556788888885 568999999999998
Q ss_pred CC
Q 036378 756 DD 757 (815)
Q Consensus 756 ~~ 757 (815)
..
T Consensus 419 ~~ 420 (641)
T KOG0352|consen 419 TE 420 (641)
T ss_pred CC
Confidence 74
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.18 E-value=1.3e-05 Score=82.93 Aligned_cols=63 Identities=29% Similarity=0.333 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCChhHHH--HHHHHHH---------HcCCcEEEEcccHHHHHHHHHhcCC
Q 036378 201 SFRDGQLEAIKMVLDKKS-TMLVLPTGAGKSL--CYQIPAM---------ILPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d-~li~apTGsGKTl--~~~lp~l---------~~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
++++.|.+||..++.... +++.||.|+|||. +.++..+ ..+..+||++|+.+.+.+.+..+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999998 9999999999993 3333334 2367899999999999999888776
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.15 E-value=1.1e-05 Score=96.91 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=41.6
Q ss_pred CceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC
Q 036378 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD 516 (815)
Q Consensus 472 ~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~ 516 (815)
..+.|++-.++..|-|-|+|-.+.-..-..|-..-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 688999999999999999999999888888888899999999994
No 176
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.14 E-value=3.4e-07 Score=95.56 Aligned_cols=353 Identities=13% Similarity=0.074 Sum_probs=189.5
Q ss_pred hhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhc--CCceEEEEccc-c----------cc
Q 036378 418 RSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS--NKIRVVVATVA-F----------GM 484 (815)
Q Consensus 418 ~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~--g~~~VLVaT~~-~----------~~ 484 (815)
.....+-.+|+|.-..-.+.---.|+..|+.+..+++..+.++-..+.....+ .+.++|-.|+- + +.
T Consensus 130 al~adg~alvi~plislmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek 209 (695)
T KOG0353|consen 130 ALCADGFALVICPLISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK 209 (695)
T ss_pred HHhcCCceEeechhHHHHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH
Confidence 34456778899998888888888889999999999999999888888887765 45666766641 1 11
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhhcCC------CCHHHHHHHHHHHhhc
Q 036378 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDG------VDEYAINKFLCQVFTN 558 (815)
Q Consensus 485 GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~~~~------~~~~~i~~~l~~~~~~ 558 (815)
.+...-.. .|-. +-+|.....|.|-++.+- -+..+++.+.... .....+......++..
T Consensus 210 a~~~~~~~-~iai-------devhccsqwghdfr~dy~-------~l~ilkrqf~~~~iigltatatn~vl~d~k~il~i 274 (695)
T KOG0353|consen 210 ALEAGFFK-LIAI-------DEVHCCSQWGHDFRPDYK-------ALGILKRQFKGAPIIGLTATATNHVLDDAKDILCI 274 (695)
T ss_pred HhhcceeE-EEee-------cceeehhhhCcccCcchH-------HHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhH
Confidence 11111111 1111 224444444544443221 1222333222111 1111122222222222
Q ss_pred CCCCCCCeeecchhHHH----HHhCCCHHHHHHHHHHHH---hcCcccEEeccccccceEEEecCCchhhhhhhHHHHHH
Q 036378 559 GMNSHGKLCSLVKESAS----RKFDIKEEVMLTLLTCLE---LGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVAT 631 (815)
Q Consensus 559 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~le---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (815)
..... ...+|++.++. ++-+-.++-++.+.+.+. .++.|+||+..+...+-...-+...+...+.||+-+.-
T Consensus 275 e~~~t-f~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep 353 (695)
T KOG0353|consen 275 EAAFT-FRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEP 353 (695)
T ss_pred Hhhhe-eecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCc
Confidence 11000 01234433332 122223444555555555 34679999987754332222222223333455555544
Q ss_pred HHhhCCcCCcee----eeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe-----------------------------
Q 036378 632 ILKKSETKQGQY----VFDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL----------------------------- 678 (815)
Q Consensus 632 ~lr~~~~~~~~~----~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~----------------------------- 678 (815)
.-+.. ..++|. .+=++++|++||+++.+|+++||.-.++.+..|+.
T Consensus 354 ~dks~-~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilev 432 (695)
T KOG0353|consen 354 EDKSG-AHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEV 432 (695)
T ss_pred ccccc-ccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhh
Confidence 43332 123443 34488999999999999998888776666655541
Q ss_pred ----------------------cCceEEEEEeCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q 036378 679 ----------------------KDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGC 736 (815)
Q Consensus 679 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kl~~m~~y~~~~~~~~~~~~~~ 736 (815)
+-++-|++.++-- | +.....+-+.|+.-+++|=.|..|+.
T Consensus 433 ctnfkiffavfsekesgragrd~~~a~cilyy~~~-d-----ifk~ssmv~~e~~g~q~ly~mv~y~~------------ 494 (695)
T KOG0353|consen 433 CTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA-D-----IFKISSMVQMENTGIQKLYEMVRYAA------------ 494 (695)
T ss_pred hccceeeeeeecchhccccccCCCcccEEEEechH-H-----HHhHHHHHHHHhhhHHHHHHHHHHHh------------
Confidence 1122222222210 0 11122244568889999999999996
Q ss_pred CCCCCchHHHHHHhcccCCCC-------CCCCCccCC----CCcHHHHHHHHH-------HHHhc----c--CCCCCHHH
Q 036378 737 NGSLHTPCLQKNILDYFRGDD-------NCDVPNKIG----QSSPFLRADIKV-------FLQSN----L--NAKFTPRA 792 (815)
Q Consensus 737 ~~~~~~~cl~~~ll~YFge~~-------~c~~c~~~~----~~~~~~~~~i~~-------~l~~~----~--~~~~~~~~ 792 (815)
+.+.|++-.|.++|+|-- .||+|-.-. ......-.++.. .|.++ . +.+.++..
T Consensus 495 ---d~s~crrv~laehfde~w~~~~c~k~cd~c~~~n~f~~~n~~ey~~dl~e~~kt~~~~i~e~ln~~k~~~~~i~~~~ 571 (695)
T KOG0353|consen 495 ---DISKCRRVKLAEHFDEAWEPEACNKMCDNCCKDNAFEGKNIKEYCRDLIEAAKTQAEEIEEHLNPAKDGDGRIGGGA 571 (695)
T ss_pred ---hhHHHHHHHHHHHHHhhcCHHHHHHHhhhhccCccccccchHHHHHHHHHHHHHHHHHHHHhcCcccccccccccch
Confidence 478899999999999852 688886321 111111111111 12221 1 23577777
Q ss_pred HHHHHhcCCCCccchh
Q 036378 793 VARILHGIASPAYPST 808 (815)
Q Consensus 793 ia~il~Gi~sp~~~~~ 808 (815)
....+.|.--|..|+.
T Consensus 572 ~~~~la~~l~~s~~re 587 (695)
T KOG0353|consen 572 AKELLAGKLAGSLNRE 587 (695)
T ss_pred HHHHHhhhhcCCCCHH
Confidence 7777888777776664
No 177
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.89 E-value=0.00019 Score=86.35 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=58.5
Q ss_pred ceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChh-----
Q 036378 291 IKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT----- 365 (815)
Q Consensus 291 ~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~----- 365 (815)
-.|+++||..|...+..+.+. +..|..|||||||++.. ++.. .-| .++++...+..-|.+|||.|..-
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~-~~~itgiiv~~Ahr~~~---~~~e--aFI-~rlyr~~n~~gfIkafSdsP~~~~~g~~ 80 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIP-PELITGILVLRADRIIE---SSQE--AFI-LRLYRQKNKTGFIKAFSDNPEAFTMGFS 80 (814)
T ss_pred CCEEEEechhhHhHHhcCCCC-HHHccEEEEeecccccc---cccH--HHH-HHHHHHhCCCcceEEecCCCcccccchH
Confidence 379999999999988888777 88999999999999974 3333 333 45666666667799999998762
Q ss_pred HHHHHHHHhcC
Q 036378 366 TLRDVMSALEI 376 (815)
Q Consensus 366 ~~~~i~~~l~~ 376 (815)
-...+++.|.+
T Consensus 81 ~l~~vmk~L~i 91 (814)
T TIGR00596 81 PLETKMRNLFL 91 (814)
T ss_pred HHHHHHHHhCc
Confidence 34455555543
No 178
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.86 E-value=4.1e-05 Score=90.34 Aligned_cols=164 Identities=18% Similarity=0.217 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCChhHHHHH--HHHHHHc----CCcEEEEcccHHHHHHHHHhcCCCceeeee
Q 036378 201 SFRDGQLEAIKMVLD----KKSTMLVLPTGAGKSLCY--QIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVIHGGFL 270 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~----g~d~li~apTGsGKTl~~--~lp~l~~----~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i 270 (815)
.+|.+|...+.++.. +-+.|+.-..|-|||+-- +++-+.. -|.-|||||| +.+-.|-.+|+++..+..|
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpT-sviLnWEMElKRwcPglKI 693 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPT-SVILNWEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeec-hhhhhhhHHHhhhCCcceE
Confidence 678899998888653 448899999999999642 2222222 4678999999 4556788889987776655
Q ss_pred ccCCCh-HHHHHHHH-HHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHH
Q 036378 271 SSSQRP-EEVAETIR-LIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRA 348 (815)
Q Consensus 271 ~~~~~~-~~~~~~~~-~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~ 348 (815)
-...+. .++....+ ..+-+..+|.|++...+.... ..+. -.++.|+|+||||.|-.| +..-. .+++.
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~--~AFk-rkrWqyLvLDEaqnIKnf----ksqrW---QAlln- 762 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDL--TAFK-RKRWQYLVLDEAQNIKNF----KSQRW---QALLN- 762 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHH--HHHH-hhccceeehhhhhhhcch----hHHHH---HHHhc-
Confidence 443322 23222211 123335788888887765431 1222 347999999999999855 32111 22222
Q ss_pred hcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 349 RLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 349 ~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
++..+.|+||.|+-.+.+-.++..+.+.
T Consensus 763 -fnsqrRLLLtgTPLqNslmELWSLmhFL 790 (1958)
T KOG0391|consen 763 -FNSQRRLLLTGTPLQNSLMELWSLMHFL 790 (1958)
T ss_pred -cchhheeeecCCchhhHHHHHHHHHHHh
Confidence 3345679999999888877676655443
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.69 E-value=0.0002 Score=72.27 Aligned_cols=60 Identities=18% Similarity=0.255 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHcCC--CEEEEcCCChhHHHHHHHH--HH-HcCCcEEEEcccHHHHHHHHHh
Q 036378 201 SFRDGQLEAIKMVLDKK--STMLVLPTGAGKSLCYQIP--AM-ILPGLTLVVCPLVALMIDQLRH 260 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~--d~li~apTGsGKTl~~~lp--~l-~~~~~~lVl~P~~~L~~q~~~~ 260 (815)
++++.|++|+..++... -+++.|+.|+|||.+.... ++ ..+..+++++||...+....+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 47899999999998654 4677899999999754322 12 3367899999999998886666
No 180
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.59 E-value=0.00024 Score=69.76 Aligned_cols=105 Identities=21% Similarity=0.194 Sum_probs=71.9
Q ss_pred ccceEEEecchHHHHHHHHHHhhCCC--cEEEecCCCCHHHHHHHHHHHhcCCceEEEEcc--ccccccccCC--ccEEE
Q 036378 422 HYYILQISGKHFETDLISRYLCDNSI--SVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV--AFGMGLDKRD--VGAVI 495 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~g~--~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~--~~~~GID~p~--v~~VI 495 (815)
.+.++||+++....+.+.+.+...+. ....+.- +..++..+++.|++++-.||+|+. .+..|||+++ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 47899999999999999999987642 1123332 356788999999999999999999 9999999997 77899
Q ss_pred EeCCCCC-H--------------------H---------HHHHHHcccCCCCCCceEEEEecc
Q 036378 496 HYSLPES-L--------------------E---------EYVQEIGRAGRDGRLSYCHLFLDD 528 (815)
Q Consensus 496 ~~d~P~s-~--------------------~---------~y~Qr~GRaGR~g~~g~~i~l~~~ 528 (815)
...+|.. + . ...|.+||+-|....--+++++++
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9998851 1 1 117889999998654334444443
No 181
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.54 E-value=5.5e-05 Score=91.97 Aligned_cols=353 Identities=11% Similarity=-0.006 Sum_probs=205.3
Q ss_pred ccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhc--CCceEEEEcccccc-------ccc----c
Q 036378 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS--NKIRVVVATVAFGM-------GLD----K 488 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~--g~~~VLVaT~~~~~-------GID----~ 488 (815)
...++|++.++.-++.-...|...|+.+..+.++++..++.++++.+.. |+++||++|.---. .+. .
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~ 579 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSR 579 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhc
Confidence 3467888999988876666777789999999999999999999999877 89999999984211 111 1
Q ss_pred CCccEEEEeCC----CC--CHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCC
Q 036378 489 RDVGAVIHYSL----PE--SLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNS 562 (815)
Q Consensus 489 p~v~~VI~~d~----P~--s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 562 (815)
..+..||.-.. -+ +...-++++|..-+. -+..-++.++. .....+.+.+.+.++.....
T Consensus 580 ~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~-fp~vPilALTA--------------TAT~~V~eDI~~~L~l~~~~ 644 (1195)
T PLN03137 580 GLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK-FPNIPVLALTA--------------TATASVKEDVVQALGLVNCV 644 (1195)
T ss_pred cccceeccCcchhhhhcccchHHHHHHHHHHHHh-CCCCCeEEEEe--------------cCCHHHHHHHHHHcCCCCcE
Confidence 12333332100 00 111111222211110 01111111111 11122333333333322100
Q ss_pred CCCeeecchhHHHHHhCC-CHHHHHHHHHHHHh---cCcccEEeccccccceEEEecCCchhhhhhhHHHHHHHHhhCCc
Q 036378 563 HGKLCSLVKESASRKFDI-KEEVMLTLLTCLEL---GEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSET 638 (815)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~le~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 638 (815)
. ...+|++.++...+-- ....+..++.++.. .+.|||++.++..++....++...+.....||+.+..-.|....
T Consensus 645 v-fr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vq 723 (1195)
T PLN03137 645 V-FRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQ 723 (1195)
T ss_pred E-eecccCccceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHH
Confidence 0 0012222221110000 11122344455542 34689999887766544444433333334455555444443200
Q ss_pred ---CCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE--------ecCceEEEEEeCC-CchhhhhHHHHHH---
Q 036378 639 ---KQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYE--------LKDPAYCYTIVEV-PSDFCALSAHLTK--- 703 (815)
Q Consensus 639 ---~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~--- 703 (815)
..+...+=++|.|++||||..+|+.+||+-.++.+..|+ ++.++.|++++.. |............
T Consensus 724 e~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~ 803 (1195)
T PLN03137 724 KQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQ 803 (1195)
T ss_pred HHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhcccccc
Confidence 112223348899999999999999999999999999998 6778899998865 2221111111000
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCchHHHHHHhcccCCCC-------CCCCCccC
Q 036378 704 -----------WLSEVENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD-------NCDVPNKI 765 (815)
Q Consensus 704 -----------~~~~~e~~~~~kl~~m~~y~~~~~~~~~~~~~~~~~~~~~cl~~~ll~YFge~~-------~c~~c~~~ 765 (815)
.....++...++|.+|+.|++ +...||+++||.||||+- .||+|...
T Consensus 804 s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce---------------~~~~CRR~~lL~yFGE~~~~~~C~~~CDnC~~~ 868 (1195)
T PLN03137 804 SPMAMGYNRMASSGRILETNTENLLRMVSYCE---------------NEVDCRRFLQLVHFGEKFDSTNCKKTCDNCSSS 868 (1195)
T ss_pred chhhhhhcccchhHHHHHHHHHHHHHHHHHHh---------------ChHhhHHHHHHHHcccccCccCCCCCCCCCCCC
Confidence 001134567899999999995 245899999999999972 26666632
Q ss_pred CC----CcHHHHHHHHHHHHhccCCCCCHHHHHHHHhcCCCCccc
Q 036378 766 GQ----SSPFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYP 806 (815)
Q Consensus 766 ~~----~~~~~~~~i~~~l~~~~~~~~~~~~ia~il~Gi~sp~~~ 806 (815)
.. +-+..+++|++++.+..+ +|+...++.||.|..+.++-
T Consensus 869 ~~~~~~D~T~~Aq~~ls~V~~~~~-~fg~~~iidvlrGs~~~~i~ 912 (1195)
T PLN03137 869 KSLIDKDVTEIARQLVELVKLTGE-RFSSAHILEVYRGSLNQYVK 912 (1195)
T ss_pred CcccccccHHHHHHHHHHHHHhcc-CcchhheehhhhccccHHHH
Confidence 22 336889999999988765 89999999999999887653
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.40 E-value=0.001 Score=67.59 Aligned_cols=127 Identities=21% Similarity=0.292 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHc---CCCEEEEcCCChhHHHHHHHHHHHc----C-CcEEEEcccHHHHHHHHHhcCCCcee----
Q 036378 200 DSFRDGQLEAIKMVLD---KKSTMLVLPTGAGKSLCYQIPAMIL----P-GLTLVVCPLVALMIDQLRHLPPVIHG---- 267 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~---g~d~li~apTGsGKTl~~~lp~l~~----~-~~~lVl~P~~~L~~q~~~~l~~~~~~---- 267 (815)
--.|+.|.++...+.+ |++.+.++-+|.|||-| ++|++.. + ..+.+++|. +|..|....+...+.+
T Consensus 22 iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r 99 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVPK-ALLEQMRQMLRSRLGGLLNR 99 (229)
T ss_pred ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcCH-HHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999886 57999999999999987 4565432 3 456666665 7888888888762211
Q ss_pred --ee--ec--cCCChHH---HHHHHHHHhcCCceEEEeChhhhhchhhhhh--h---------------hhcCcccEEEE
Q 036378 268 --GF--LS--SSQRPEE---VAETIRLIQVGAIKVLFVSPERFLNADFLSI--F---------------TATSLISLVVV 321 (815)
Q Consensus 268 --~~--i~--~~~~~~~---~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~--~---------------~~~~~i~~lVi 321 (815)
.. .+ ....... ....++.+... -.|+++|||.+++...... + ..+.....=|+
T Consensus 100 ~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~-~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdil 178 (229)
T PF12340_consen 100 RIYHLPFSRSTPLTPETLEKIRQLLEECMRS-GGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDIL 178 (229)
T ss_pred eeEEecccCCCCCCHHHHHHHHHHHHHHHHc-CCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEe
Confidence 11 11 1222222 22333334332 2699999998876322111 1 01223455689
Q ss_pred eccccccc
Q 036378 322 DEAHCVSE 329 (815)
Q Consensus 322 DEaH~i~~ 329 (815)
||+|.++.
T Consensus 179 DEsDe~L~ 186 (229)
T PF12340_consen 179 DESDEILS 186 (229)
T ss_pred ECchhccC
Confidence 99998763
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.34 E-value=0.00057 Score=68.75 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----CCcEEEEcccHHH
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-----PGLTLVVCPLVAL 253 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-----~~~~lVl~P~~~L 253 (815)
..++.|..++.++++.+-+++.||.|+|||+..+..++.. -.+.+++-|..+.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 4678999999999988888999999999999887777633 2467888888754
No 184
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.30 E-value=0.0013 Score=78.22 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=98.3
Q ss_pred HHHHHHHhhc--cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCC--ceEEEEcccccccc
Q 036378 411 DEVFSFHRSS--KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK--IRVVVATVAFGMGL 486 (815)
Q Consensus 411 ~~l~~l~~~~--~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~--~~VLVaT~~~~~GI 486 (815)
..|..|++.+ .+.+++||+.-.+..+-|..+|.-+|+....+.|...-++|...+++|..+. ...|++|-.-|.||
T Consensus 1263 QtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGi 1342 (1958)
T KOG0391|consen 1263 QTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGI 1342 (1958)
T ss_pred HHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccc
Confidence 3444444443 4689999999999999999999999999999999999999999999998764 35688999999999
Q ss_pred ccCCccEEEEeCCCCCHHHHHHHHcccCCCCCC--ceEEEEecccc
Q 036378 487 DKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRL--SYCHLFLDDIT 530 (815)
Q Consensus 487 D~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~--g~~i~l~~~~d 530 (815)
|+-+.+.||.||--++...-.|.--|+.|-|+. -+.|-|++...
T Consensus 1343 NLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1343 NLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 999999999999999887666666666666654 44556666653
No 185
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.25 E-value=0.0026 Score=74.76 Aligned_cols=164 Identities=19% Similarity=0.152 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCCC-CCHHHHHHHHHHHcCCCEEEEcCCChhHHHHH--HHHHHHc-----CCcEEEEcccHHHHHHHH
Q 036378 187 ENLGRLLRLVYGYDS-FRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCY--QIPAMIL-----PGLTLVVCPLVALMIDQL 258 (815)
Q Consensus 187 ~~l~~~l~~~~g~~~-~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~--~lp~l~~-----~~~~lVl~P~~~L~~q~~ 258 (815)
..+.+.|...|+... ..+.|+.|+...+.++-+++.|+.|+|||.+. ++..+.. ...+++++||-.-+....
T Consensus 137 ~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~ 216 (615)
T PRK10875 137 ALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLT 216 (615)
T ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHH
Confidence 345566777776542 36899999999999999999999999999653 2333322 236888999999888777
Q ss_pred HhcCCCceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchh-----hhhhhhhcCcccEEEEeccccccccccC
Q 036378 259 RHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNAD-----FLSIFTATSLISLVVVDEAHCVSEWSHN 333 (815)
Q Consensus 259 ~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~-----~~~~~~~~~~i~~lViDEaH~i~~~g~~ 333 (815)
+.+........+ ... ... ....-..|-.+|+... +.........+++||||||-.+.
T Consensus 217 e~~~~~~~~~~~----~~~-~~~--------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----- 278 (615)
T PRK10875 217 ESLGKALRQLPL----TDE-QKK--------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----- 278 (615)
T ss_pred HHHHhhhhcccc----chh-hhh--------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc-----
Confidence 766542211100 000 000 0111122333333211 11111112357999999999875
Q ss_pred chHHHHHHHHHHHHHhcccceeEeeecc------cChhHHHHHHHH
Q 036378 334 FRPSYMRLRASLLRARLNVECILAMTAT------ATTTTLRDVMSA 373 (815)
Q Consensus 334 fr~~~~~i~~~~~~~~~~~~~vl~lSAT------~~~~~~~~i~~~ 373 (815)
..++..+++...+..++|++.=. -...++.+++..
T Consensus 279 -----~~lm~~ll~al~~~~rlIlvGD~~QL~sV~~G~VL~DL~~~ 319 (615)
T PRK10875 279 -----LPMMARLIDALPPHARVIFLGDRDQLASVEAGAVLGDICRF 319 (615)
T ss_pred -----HHHHHHHHHhcccCCEEEEecchhhcCCCCCCchHHHHHHh
Confidence 34445666676677777776533 123566666654
No 186
>PRK10536 hypothetical protein; Provisional
Probab=97.19 E-value=0.004 Score=64.54 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=43.0
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cC--CcEEEEcccHHH
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LP--GLTLVVCPLVAL 253 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~--~~~lVl~P~~~L 253 (815)
++....+..|...+.++.++.-+++.||+|+|||+.....++. .+ .+++|.-|+.+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 5667788899999999999888899999999999876655542 22 335666666544
No 187
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.18 E-value=0.0012 Score=74.38 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEcCCChhHHHHHHHHH---HHcCCcEEEEcccHHHHHHHHHhcC
Q 036378 200 DSFRDGQLEAIKMVLDKKS-TMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLVALMIDQLRHLP 262 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d-~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~q~~~~l~ 262 (815)
..+.+-|+.|+....+.++ .+++||.|+|||.+....+ +..+.++||..||.+-+..+++++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 3677899999999999875 4788999999996644333 4558999999999999999999754
No 188
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.18 E-value=0.002 Score=75.49 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHcCCCEEEEcCCChhHHHHH--HHHHHHc------CCcEEEEcccHHHHHHHHHhcCCCceeeeeccCC
Q 036378 203 RDGQLEAIKMVLDKKSTMLVLPTGAGKSLCY--QIPAMIL------PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQ 274 (815)
Q Consensus 203 ~~~Q~~ai~~il~g~d~li~apTGsGKTl~~--~lp~l~~------~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~ 274 (815)
.+.|+.|+..++.++-+++.|+.|+|||.+. ++.++.. ...+++.+||---+....+.+.........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~---- 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA---- 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc----
Confidence 4799999999999999999999999999653 3333321 146899999988887766665442211100
Q ss_pred ChHHHHHHHHHHhcCCceEEEeChhhhhchhh-----hhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHh
Q 036378 275 RPEEVAETIRLIQVGAIKVLFVSPERFLNADF-----LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR 349 (815)
Q Consensus 275 ~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~-----~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~ 349 (815)
.. . ... ...+-..|-.+|+.... .........+++||||||-.+. ..++..+++..
T Consensus 223 ~~-~---~~~-----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----------~~l~~~ll~al 283 (586)
T TIGR01447 223 AE-A---LIA-----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----------LPLMAKLLKAL 283 (586)
T ss_pred ch-h---hhh-----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----------HHHHHHHHHhc
Confidence 00 0 000 01112334444432211 1111113368999999999885 23334556666
Q ss_pred cccceeEeeecc------cChhHHHHHHHH
Q 036378 350 LNVECILAMTAT------ATTTTLRDVMSA 373 (815)
Q Consensus 350 ~~~~~vl~lSAT------~~~~~~~~i~~~ 373 (815)
.+..++|++.=. -...+..+++..
T Consensus 284 ~~~~rlIlvGD~~QLpsV~~G~vl~dl~~~ 313 (586)
T TIGR01447 284 PPNTKLILLGDKNQLPSVEAGAVLGDLCEL 313 (586)
T ss_pred CCCCEEEEECChhhCCCCCCChhHHHHHHh
Confidence 666777765432 123566666654
No 189
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.15 E-value=0.0034 Score=74.67 Aligned_cols=64 Identities=20% Similarity=0.192 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEcCCChhHHHHHHHH---HHHcCCcEEEEcccHHHHHHHHHhcCC
Q 036378 200 DSFRDGQLEAIKMVLDK-KSTMLVLPTGAGKSLCYQIP---AMILPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g-~d~li~apTGsGKTl~~~lp---~l~~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
..+++.|.+|+..++.. ..+++.||+|+|||.+..-. ++..+.++||++||..-+.+..+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35688999999999987 57789999999999543322 234578999999999999999888876
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.15 E-value=0.001 Score=55.92 Aligned_cols=53 Identities=23% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHHHcCCC-EEEEcCCChhHHHHHH-HHHH--Hc----CCcEEEEcccHHHHHHHHHhc
Q 036378 209 AIKMVLDKKS-TMLVLPTGAGKSLCYQ-IPAM--IL----PGLTLVVCPLVALMIDQLRHL 261 (815)
Q Consensus 209 ai~~il~g~d-~li~apTGsGKTl~~~-lp~l--~~----~~~~lVl~P~~~L~~q~~~~l 261 (815)
||...+.+.. +++.+|.|||||.+.+ +.+. .. +..++|++|++..+....+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4553444444 5569999999994433 2222 22 678999999999999998888
No 191
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.11 E-value=0.0015 Score=73.93 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=62.7
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH----HcCCcEEEEcccHHHHHHHHHhcCC-Cceeeeec
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM----ILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLS 271 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l----~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~ 271 (815)
+|+.+++.-|..|+.++|...-.|+++|.|+|||.+-.-.++ ...+.+||++|+...+.|..+.+.+ +++...+.
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl~ 485 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRLC 485 (935)
T ss_pred CCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEeeee
Confidence 677899999999999999999999999999999976544333 2488999999999999999999887 66655443
No 192
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.08 E-value=2e-05 Score=93.51 Aligned_cols=351 Identities=11% Similarity=0.022 Sum_probs=202.1
Q ss_pred cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccc------cccccCCccEE
Q 036378 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG------MGLDKRDVGAV 494 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~------~GID~p~v~~V 494 (815)
..+.++|++.++.-++...+.|+..|+.+..+|++++..++..++.....|..+|+++|.--- .-+...++.+|
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~i 131 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALV 131 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEE
Confidence 345678889999999888899999999999999999999999999999999999999885321 12334466666
Q ss_pred EEeCC---C---CCHHHHHHHHcccCCCCCCceEEEEecc-ccHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCee
Q 036378 495 IHYSL---P---ESLEEYVQEIGRAGRDGRLSYCHLFLDD-ITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLC 567 (815)
Q Consensus 495 I~~d~---P---~s~~~y~Qr~GRaGR~g~~g~~i~l~~~-~d~~~l~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 567 (815)
|.-.. + .+...-+.++|..-..- ++.-++.++. .... +...+...++..... ....
T Consensus 132 ViDEaH~i~~~g~~frp~y~~l~~l~~~~-~~~~vi~lTAT~~~~---------------~~~~i~~~l~~~~~~-~~~~ 194 (591)
T TIGR01389 132 AVDEAHCVSQWGHDFRPEYQRLGSLAERF-PQVPRIALTATADAE---------------TRQDIRELLRLADAN-EFIT 194 (591)
T ss_pred EEeCCcccccccCccHHHHHHHHHHHHhC-CCCCEEEEEeCCCHH---------------HHHHHHHHcCCCCCC-eEec
Confidence 63211 1 11222223333322211 1111333321 1111 111122222211100 0001
Q ss_pred ecchhHHHHHhCCCHHHHHHHHHHHHhc--CcccEEeccccccceEEEecCCchhhhhhhHHHHHHHHhhCC---cCCce
Q 036378 568 SLVKESASRKFDIKEEVMLTLLTCLELG--EIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSE---TKQGQ 642 (815)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~l~~le~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~---~~~~~ 642 (815)
+++..++.....-.......++.+|... ..++|++.++..++....++...+.....+|..+....|... -..+.
T Consensus 195 ~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~ 274 (591)
T TIGR01389 195 SFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDD 274 (591)
T ss_pred CCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 1222211111100112234455555532 467888877665543333332222212223332222222210 01122
Q ss_pred eeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE--------ecCceEEEEEeCC-CchhhhhHHHHHHHHHHHHHHHH
Q 036378 643 YVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYE--------LKDPAYCYTIVEV-PSDFCALSAHLTKWLSEVENCKV 713 (815)
Q Consensus 643 ~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~ 713 (815)
..+=++|.|.+||+|.++|+.++++-.+.++..|+ ++.++.+++++.. |........+......++++.+.
T Consensus 275 ~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~~~~~~~~~ 354 (591)
T TIGR01389 275 VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSEADDDYKQIER 354 (591)
T ss_pred CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 23337889999999999999999998888887776 5667888887766 22222211111111122445667
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCchHHHHHHhcccCCCC--C---CCCCccCCC--CcHHHHHHHHHHHHhccCC
Q 036378 714 RKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD--N---CDVPNKIGQ--SSPFLRADIKVFLQSNLNA 786 (815)
Q Consensus 714 ~kl~~m~~y~~~~~~~~~~~~~~~~~~~~~cl~~~ll~YFge~~--~---c~~c~~~~~--~~~~~~~~i~~~l~~~~~~ 786 (815)
.+|++|..|++ ...|++.+|++||||.. . ||+|..... +-+...++|++++.+..+
T Consensus 355 ~~l~~~~~~~~----------------~~~c~r~~~~~~f~~~~~~~c~~cd~c~~~~~~~~~t~~~~~~~~~~~~~~~- 417 (591)
T TIGR01389 355 EKLRAMIAYCE----------------TQTCRRAYILRYFGENEVEPCGNCDNCLDPPKSYDATVEAQKALSCVYRMGQ- 417 (591)
T ss_pred HHHHHHHHHHc----------------ccccHhHHHHHhcCCCCCCCCCCCCCCCCCCceeehHHHHHHHHHHHHHhcC-
Confidence 89999999994 57899999999999863 3 555542211 226678889999988765
Q ss_pred CCCHHHHHHHHhcCCCCcc
Q 036378 787 KFTPRAVARILHGIASPAY 805 (815)
Q Consensus 787 ~~~~~~ia~il~Gi~sp~~ 805 (815)
+++...++.+++|..+..+
T Consensus 418 ~~~~~~~~~~~~g~~~~~~ 436 (591)
T TIGR01389 418 RFGVGYIIEVLRGSKNDKI 436 (591)
T ss_pred CCchhHhHHHHhCccchhH
Confidence 8999999999999876554
No 193
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.01 E-value=0.0009 Score=74.11 Aligned_cols=90 Identities=20% Similarity=0.145 Sum_probs=57.6
Q ss_pred CEEEEcCCChhHHHHHHHHHHH-----cCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCce
Q 036378 218 STMLVLPTGAGKSLCYQIPAMI-----LPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIK 292 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~-----~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~ 292 (815)
-++|.|..|||||++.+-.+.. .+..++++++..+|+......+...... +...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------------~~~~ 61 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP---------------------KLKK 61 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc---------------------chhh
Confidence 4688899999999876544432 3678999999999999888877663200 0112
Q ss_pred EEEeChhhhhchhhhhhhhhcCcccEEEEeccccccc
Q 036378 293 VLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSE 329 (815)
Q Consensus 293 Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~ 329 (815)
..+..+..+.+...... ......++|||||||++.+
T Consensus 62 ~~~~~~~~~i~~~~~~~-~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 62 SDFRKPTSFINNYSESD-KEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhHHHHhhccccc-ccCCcCCEEEEehhHhhhh
Confidence 22333333322211111 1145799999999999976
No 194
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.93 E-value=0.0014 Score=69.02 Aligned_cols=157 Identities=20% Similarity=0.153 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHc----------CCCEEEEcCCChhHHHHHHHHHH---HcCC-cEEEEcccHHHHHHHHHhcCCC-c
Q 036378 201 SFRDGQLEAIKMVLD----------KKSTMLVLPTGAGKSLCYQIPAM---ILPG-LTLVVCPLVALMIDQLRHLPPV-I 265 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~----------g~d~li~apTGsGKTl~~~lp~l---~~~~-~~lVl~P~~~L~~q~~~~l~~~-~ 265 (815)
.++..|.++|-...+ +.-+++--.||.||--.-.--++ ..+. ++|+|+.+-.|-.|..+.|... .
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 356677776655442 34567777899999854322222 3344 5999999999999999998862 1
Q ss_pred e---eeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhh-----hhhhhhc------CcccEEEEeccccccccc
Q 036378 266 H---GGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF-----LSIFTAT------SLISLVVVDEAHCVSEWS 331 (815)
Q Consensus 266 ~---~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~-----~~~~~~~------~~i~~lViDEaH~i~~~g 331 (815)
. ...++. ....+. ..+ .-.||++|...|..... ..++..+ ..=++||+||+|......
T Consensus 117 ~~i~v~~l~~-~~~~~~----~~~---~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~ 188 (303)
T PF13872_consen 117 DNIPVHPLNK-FKYGDI----IRL---KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLS 188 (303)
T ss_pred Ccccceechh-hccCcC----CCC---CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCC
Confidence 1 111111 000000 111 23599999998876531 1221111 123589999999987432
Q ss_pred cC-chHHHHHHHHHHHHHhcccceeEeeecccChh
Q 036378 332 HN-FRPSYMRLRASLLRARLNVECILAMTATATTT 365 (815)
Q Consensus 332 ~~-fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~ 365 (815)
.+ -.++-.......+....+..+++.+|||...+
T Consensus 189 ~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase 223 (303)
T PF13872_consen 189 SGSKKPSKTGIAVLELQNRLPNARVVYASATGASE 223 (303)
T ss_pred ccCccccHHHHHHHHHHHhCCCCcEEEecccccCC
Confidence 11 01122222122355666778899999997655
No 195
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.89 E-value=0.0075 Score=72.85 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=47.3
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHH--HHHHHc-C--CcEEEEcccHHHHHHHHH
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQ--IPAMIL-P--GLTLVVCPLVALMIDQLR 259 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~--lp~l~~-~--~~~lVl~P~~~L~~q~~~ 259 (815)
.| ..+++.|++|+..+..++-+++.|+.|+|||.+.. +-++.. + ..+++++||-..+....+
T Consensus 320 ~~-~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 320 LR-KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred cC-CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 44 46899999999999999999999999999997532 223332 3 468888999888765443
No 196
>PRK06526 transposase; Provisional
Probab=96.88 E-value=0.0067 Score=63.71 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=17.6
Q ss_pred HHcCCCEEEEcCCChhHHHHHH
Q 036378 213 VLDKKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 213 il~g~d~li~apTGsGKTl~~~ 234 (815)
+-.+++++++||+|+|||....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHH
Confidence 3356799999999999996543
No 197
>PRK08181 transposase; Validated
Probab=96.77 E-value=0.016 Score=61.23 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=33.1
Q ss_pred CCHHHHHHHHH----HHcCCCEEEEcCCChhHHHHHHHHH--HHcCCcEEEEcccHHHHHHH
Q 036378 202 FRDGQLEAIKM----VLDKKSTMLVLPTGAGKSLCYQIPA--MILPGLTLVVCPLVALMIDQ 257 (815)
Q Consensus 202 ~~~~Q~~ai~~----il~g~d~li~apTGsGKTl~~~lp~--l~~~~~~lVl~P~~~L~~q~ 257 (815)
..+.|..++.. +-.++++++.||+|+|||......+ +...+..++..+..+|+.+.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 34566666633 3467899999999999995333222 22233334444555565554
No 198
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.71 E-value=0.0025 Score=74.39 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=52.6
Q ss_pred CCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCC--CCCc-----------eEEEEeccccHHHHHHh
Q 036378 471 NKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRD--GRLS-----------YCHLFLDDITYFRLRSL 537 (815)
Q Consensus 471 g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~--g~~g-----------~~i~l~~~~d~~~l~~~ 537 (815)
...+.|++--++-.|-|=|+|=.+.-..-..|-.+=.|++||.-|- .+.| .-.++++.++...++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999993 2223 23455666665555544
No 199
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.58 E-value=0.011 Score=69.97 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHHcCCCE-EEEcCCChhHHHHH--HHHHH-HcCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCC-
Q 036378 201 SFRDGQLEAIKMVLDKKST-MLVLPTGAGKSLCY--QIPAM-ILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQ- 274 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~-li~apTGsGKTl~~--~lp~l-~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~- 274 (815)
.++.-|++|+..++.-+|. |+.|=.|+|||.+. ++-+| ..++.+|+.+=|.+-+..+.-.|+. .+....+.+..
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~k 748 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEK 748 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccc
Confidence 6788999999999988864 78899999999643 33333 4588899999999999999888887 33222222211
Q ss_pred --------------ChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccc
Q 036378 275 --------------RPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSE 329 (815)
Q Consensus 275 --------------~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~ 329 (815)
+....... +. .-+.+.||.+|---+.+.+|. .+.+++.|||||-.++.
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l-~~-~~~~~~IVa~TClgi~~plf~-----~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADL-KK-FLDQTSIVACTCLGINHPLFV-----NRQFDYCIIDEASQILL 810 (1100)
T ss_pred cchHHHHHhcccccchhhHHHH-HH-HhCCCcEEEEEccCCCchhhh-----ccccCEEEEcccccccc
Confidence 11111111 11 124678999986666555544 34689999999998864
No 200
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.57 E-value=0.019 Score=54.55 Aligned_cols=67 Identities=24% Similarity=0.333 Sum_probs=48.0
Q ss_pred HHHHHHHHhhCCC------cEEEecCCCCHHHHHHHHHHHhcCC-ceEEEEccccccccccCC--ccEEEEeCCCC
Q 036378 435 TDLISRYLCDNSI------SVKSYHSGIPAKDRSRIQELFCSNK-IRVVVATVAFGMGLDKRD--VGAVIHYSLPE 501 (815)
Q Consensus 435 ~e~l~~~L~~~g~------~v~~~h~~~~~~~R~~i~~~F~~g~-~~VLVaT~~~~~GID~p~--v~~VI~~d~P~ 501 (815)
.+.+++.+...+. .-..+.-+.+..+...+++.|.+.. ..||++|..+..|||+|+ .+.||...+|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3445555555443 2344555566667888999998754 379999988999999998 56799888774
No 201
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.39 E-value=0.019 Score=54.54 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=61.0
Q ss_pred HHHHHHHHhhCCC---cEEEecCCCCHHHHHHHHHHHhcCCc---eEEEEccc--cccccccCC--ccEEEEeCCCCC--
Q 036378 435 TDLISRYLCDNSI---SVKSYHSGIPAKDRSRIQELFCSNKI---RVVVATVA--FGMGLDKRD--VGAVIHYSLPES-- 502 (815)
Q Consensus 435 ~e~l~~~L~~~g~---~v~~~h~~~~~~~R~~i~~~F~~g~~---~VLVaT~~--~~~GID~p~--v~~VI~~d~P~s-- 502 (815)
.+.+++.+.+.++ ....+.-+....+..++++.|.+... .||+|+.- +..|||+|+ .+.||...+|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4556666665543 22333333333455788889987543 69999988 999999998 578998888741
Q ss_pred --H---------------------------HHHHHHHcccCCCCCCceEEEEec
Q 036378 503 --L---------------------------EEYVQEIGRAGRDGRLSYCHLFLD 527 (815)
Q Consensus 503 --~---------------------------~~y~Qr~GRaGR~g~~g~~i~l~~ 527 (815)
. ....|.+||+=|....--++++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 122788999999865433444443
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.042 Score=61.12 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=37.8
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhc-ccceeEeeecccChhHHHHHHHHhc
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARL-NVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~-~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
+.+.++|+||++.+... +- ....++ ..++.... +...+|.++||.......++...+.
T Consensus 252 ~~~~DlVLIDTaGr~~~---~~-~~l~el-~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~ 310 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPK---DF-MKLAEM-KELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS 310 (388)
T ss_pred hCCCCEEEEcCCCCCcc---CH-HHHHHH-HHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc
Confidence 46789999999997641 11 122333 44444433 2357899999999888777766553
No 203
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.31 E-value=0.024 Score=53.17 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=16.9
Q ss_pred CCCEEEEcCCChhHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp 236 (815)
++.+++.||+|+|||......
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 678999999999999754433
No 204
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.1 Score=57.64 Aligned_cols=57 Identities=23% Similarity=0.182 Sum_probs=35.5
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHh
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l 374 (815)
+.+.++|+||++-... +.......+..+.....+...++.++||...++..++...+
T Consensus 213 l~~~DlVLIDTaG~~~-----~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQ-----RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred hcCCCEEEEcCCCCCc-----ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 5678999999996431 22233333233222223344689999999998887776554
No 205
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.18 E-value=0.041 Score=55.44 Aligned_cols=56 Identities=21% Similarity=0.159 Sum_probs=36.7
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHh
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l 374 (815)
.+.++|+||-+-+.. ..+....-+..+.....+....+.++||...+....+..+.
T Consensus 82 ~~~D~vlIDT~Gr~~-----~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSP-----RDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY 137 (196)
T ss_dssp TTSSEEEEEE-SSSS-----THHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH
T ss_pred cCCCEEEEecCCcch-----hhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh
Confidence 468899999887542 22333333355565556667889999999988877665554
No 206
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.17 E-value=0.034 Score=67.55 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEcCCChhHHHHHHHH--HH-HcCCcEEEEcccHHHHHHHH
Q 036378 200 DSFRDGQLEAIKMVLDK-KSTMLVLPTGAGKSLCYQIP--AM-ILPGLTLVVCPLVALMIDQL 258 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g-~d~li~apTGsGKTl~~~lp--~l-~~~~~~lVl~P~~~L~~q~~ 258 (815)
..+++.|++|+..++.+ +-+++.|+.|+|||...... ++ ..+..+++++||--.+....
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH
Confidence 45899999999999874 56789999999999654322 12 23677899999977665554
No 207
>PRK12377 putative replication protein; Provisional
Probab=96.14 E-value=0.06 Score=56.21 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH-------c-CCCEEEEcCCChhHHHHHH-HH-HHHcCCcEEEEcccHHHHHHHHHh
Q 036378 204 DGQLEAIKMVL-------D-KKSTMLVLPTGAGKSLCYQ-IP-AMILPGLTLVVCPLVALMIDQLRH 260 (815)
Q Consensus 204 ~~Q~~ai~~il-------~-g~d~li~apTGsGKTl~~~-lp-~l~~~~~~lVl~P~~~L~~q~~~~ 260 (815)
+.|..++..+. . ...+++.||+|+|||.... +. .+...+..++.++..+|+.+....
T Consensus 81 ~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 81 DGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES 147 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH
Confidence 56665554322 1 3578999999999995332 22 233345555666666776655443
No 208
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.12 E-value=0.0094 Score=55.51 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=13.8
Q ss_pred CCCEEEEcCCChhHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp 236 (815)
++.+++.|++|+|||.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~ 24 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRL 24 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHH
Confidence 567899999999999765433
No 209
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.05 E-value=0.04 Score=68.06 Aligned_cols=58 Identities=17% Similarity=0.018 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHcCCC-EEEEcCCChhHHHHHHHH--HHH-cCCcEEEEcccHHHHHHH
Q 036378 200 DSFRDGQLEAIKMVLDKKS-TMLVLPTGAGKSLCYQIP--AMI-LPGLTLVVCPLVALMIDQ 257 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d-~li~apTGsGKTl~~~lp--~l~-~~~~~lVl~P~~~L~~q~ 257 (815)
..+++.|++||..++.+++ +++.|..|+|||.+.... ++. .+..++.++||-..+...
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHH
Confidence 3699999999999998764 678899999999763221 122 367899999997766444
No 210
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=96.05 E-value=0.00072 Score=80.34 Aligned_cols=351 Identities=12% Similarity=0.041 Sum_probs=197.4
Q ss_pred ccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccc------ccccccCCccEEE
Q 036378 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF------GMGLDKRDVGAVI 495 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~------~~GID~p~v~~VI 495 (815)
...++|++.++.-+.+..+.|+..|+.+..++++++.+++..++.....|+.+++++|+-- -..+...++.+||
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iV 144 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLA 144 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEE
Confidence 4568888999999999999999999999999999999999999999999999999988531 1222333456655
Q ss_pred EeC---CC---CCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCeeec
Q 036378 496 HYS---LP---ESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSL 569 (815)
Q Consensus 496 ~~d---~P---~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 569 (815)
.-. ++ .+...-+..++..-+. .++.-+++++.- .+ ..+...+...+..... .....++
T Consensus 145 IDEaH~i~~~G~~fr~~y~~L~~l~~~-~p~~~~v~lTAT-------------~~-~~~~~di~~~l~l~~~-~~~~~~~ 208 (607)
T PRK11057 145 VDEAHCISQWGHDFRPEYAALGQLRQR-FPTLPFMALTAT-------------AD-DTTRQDIVRLLGLNDP-LIQISSF 208 (607)
T ss_pred EeCccccccccCcccHHHHHHHHHHHh-CCCCcEEEEecC-------------CC-hhHHHHHHHHhCCCCe-EEEECCC
Confidence 311 00 0111111222222111 112212222211 01 1111112222211110 0000112
Q ss_pred chhHHHHHhCCCHHHHHHHHHHHHh--cCcccEEeccccccceEEEecCCchhhhhhhHHHHHHHHhhCC---cCCceee
Q 036378 570 VKESASRKFDIKEEVMLTLLTCLEL--GEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSE---TKQGQYV 644 (815)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~l~~le~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~---~~~~~~~ 644 (815)
+..++...+--....+..++.+++. ...++|++.+...++.....+...+.....+|+.+..-.|... -..+...
T Consensus 209 ~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~ 288 (607)
T PRK11057 209 DRPNIRYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ 288 (607)
T ss_pred CCCcceeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC
Confidence 2111110000011123445555552 2467888776665443333222222112222322222222110 0112222
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE--------ecCceEEEEEeCCCchhhhhHHHHHHH--HHHHHHHHHH
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE--------LKDPAYCYTIVEVPSDFCALSAHLTKW--LSEVENCKVR 714 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~ 714 (815)
+=++|.+.+||+|.++|+.++++-.+.++.+|. .+.++.+++++... |.. ....+... ....++.+..
T Consensus 289 VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~-d~~-~~~~~~~~~~~~~~~~~~~~ 366 (607)
T PRK11057 289 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA-DMA-WLRRCLEEKPAGQQQDIERH 366 (607)
T ss_pred EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHH-HHH-HHHHHHhcCCcHHHHHHHHH
Confidence 337888999999999999999888777777776 55667788877662 211 11111111 1123345567
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCCCCchHHHHHHhcccCCCC--CCCCCc-cCCC----CcHHHHHHHHHHHHhccCCC
Q 036378 715 KLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD--NCDVPN-KIGQ----SSPFLRADIKVFLQSNLNAK 787 (815)
Q Consensus 715 kl~~m~~y~~~~~~~~~~~~~~~~~~~~~cl~~~ll~YFge~~--~c~~c~-~~~~----~~~~~~~~i~~~l~~~~~~~ 787 (815)
+|++|..|++ +..||++.|++||||.. .|+.|. |... ..+..++++++++.+..+ +
T Consensus 367 ~l~~~~~~~~----------------~~~Crr~~~l~yf~e~~~~~c~~cd~c~~~~~~~~~~~~~~~~~~~~~~~~~-~ 429 (607)
T PRK11057 367 KLNAMGAFAE----------------AQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLEDAQKALSCIYRVNQ-R 429 (607)
T ss_pred HHHHHHHHHh----------------cccCHHHHHHHHhCCCCCCCCCCCCCCCCcccccccHHHHHHHHHHHHHhcC-C
Confidence 8999999994 56799999999999973 455554 3332 225667889999988765 8
Q ss_pred CCHHHHHHHHhcCCCCccch
Q 036378 788 FTPRAVARILHGIASPAYPS 807 (815)
Q Consensus 788 ~~~~~ia~il~Gi~sp~~~~ 807 (815)
++...++.+|.|..+.++..
T Consensus 430 ~~~~~~~~~~~g~~~~~~~~ 449 (607)
T PRK11057 430 FGMGYVVEVLRGANNQRIRD 449 (607)
T ss_pred CCcceeeeeeeccCcchhhh
Confidence 99999999999998877644
No 211
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.03 E-value=0.022 Score=56.51 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=26.1
Q ss_pred cCCCEEEEcCCChhHHHHHHHHH--HHcCCcEEEEcccHHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPA--MILPGLTLVVCPLVALMIDQL 258 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~--l~~~~~~lVl~P~~~L~~q~~ 258 (815)
.++++++.|++|+|||......+ +...+..+..+...+|+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 47789999999999996443322 233455455556667766543
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.97 E-value=0.075 Score=55.38 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHc--------CCCEEEEcCCChhHHHHHHHHH--HHcCCcEEEEcccHHHHHH
Q 036378 203 RDGQLEAIKMVLD--------KKSTMLVLPTGAGKSLCYQIPA--MILPGLTLVVCPLVALMID 256 (815)
Q Consensus 203 ~~~Q~~ai~~il~--------g~d~li~apTGsGKTl~~~lp~--l~~~~~~lVl~P~~~L~~q 256 (815)
.+.|..|+..+.. ...+++.|++|+|||......+ +...+..+++++..+|+..
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 3566666655442 1468999999999995433222 2233444444455455443
No 213
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.96 E-value=0.021 Score=67.22 Aligned_cols=38 Identities=34% Similarity=0.420 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCChhHHHHHHHHHH
Q 036378 201 SFRDGQLEAIKMVLD----KKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~----g~d~li~apTGsGKTl~~~lp~l 238 (815)
+|+|.|..-+..++. .++.++..|||+||||+.+-..+
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~L 62 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTL 62 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHH
Confidence 468888887777664 67899999999999987665444
No 214
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.92 E-value=0.017 Score=64.19 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHH------HcCCCEEEEcCCChhHHHHHHHHH--HH-cCCcEEEEcccHHHHHH
Q 036378 201 SFRDGQLEAIKMV------LDKKSTMLVLPTGAGKSLCYQIPA--MI-LPGLTLVVCPLVALMID 256 (815)
Q Consensus 201 ~~~~~Q~~ai~~i------l~g~d~li~apTGsGKTl~~~lp~--l~-~~~~~lVl~P~~~L~~q 256 (815)
.+++-|++++..+ ..+..+++.|+-|+|||.++-... +. .+..+++++||-.-|..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHh
Confidence 3678899998888 567889999999999998654332 11 25568889998655543
No 215
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.89 E-value=0.046 Score=58.65 Aligned_cols=61 Identities=23% Similarity=0.216 Sum_probs=48.3
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCC-C-EEEEcCCChhHHHHHHHHHHHc------CCcEEEEcccHHHHH
Q 036378 195 LVYGYDSFRDGQLEAIKMVLDKK-S-TMLVLPTGAGKSLCYQIPAMIL------PGLTLVVCPLVALMI 255 (815)
Q Consensus 195 ~~~g~~~~~~~Q~~ai~~il~g~-d-~li~apTGsGKTl~~~lp~l~~------~~~~lVl~P~~~L~~ 255 (815)
+.||...-.-.|.-|+..++... + +.+.++-|||||+.++.+++.. -.+.||.=|+..+-+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE 290 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc
Confidence 45999988999999999999866 3 4577999999999887777643 456788888876653
No 216
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.87 E-value=0.26 Score=55.80 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=37.5
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHH-HhcccceeEeeecccChhHHHHHHHHhc
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR-ARLNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~-~~~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
+.+.++|+||.+-... +.......+..++. ...+....+.++||........+...+.
T Consensus 297 ~~~~DlVlIDt~G~~~-----~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 297 LRDCDVILIDTAGRSQ-----RDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred hCCCCEEEEeCCCCCC-----CCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 4568999999986532 22233333344444 2233456888999999988888877664
No 217
>PRK06921 hypothetical protein; Provisional
Probab=95.82 E-value=0.24 Score=52.54 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=24.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHH--HHcC-CcEEEEcccHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA--MILP-GLTLVVCPLVALMID 256 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~--l~~~-~~~lVl~P~~~L~~q 256 (815)
+..+++.|++|+|||......+ +... +..++.++..+|+.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 5689999999999995332221 2222 444444555555444
No 218
>PRK05642 DNA replication initiation factor; Validated
Probab=95.78 E-value=0.051 Score=56.46 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=25.8
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChh
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~ 365 (815)
+..+++||||++|.+.. .+.+...+-.++.........+++|++..+.
T Consensus 95 ~~~~d~LiiDDi~~~~~-----~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 95 LEQYELVCLDDLDVIAG-----KADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hhhCCEEEEechhhhcC-----ChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 44678999999998742 1222222223333333323356677775554
No 219
>PRK14974 cell division protein FtsY; Provisional
Probab=95.76 E-value=0.092 Score=57.30 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=34.4
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHH
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSA 373 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~ 373 (815)
.+.++|+||.|.++. ....+..-+..+.+...+...++.++||...+....+..+
T Consensus 221 ~~~DvVLIDTaGr~~-----~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 221 RGIDVVLIDTAGRMH-----TDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCCEEEEECCCccC-----CcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 367899999999874 1122222224445545566678899998877666555433
No 220
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.75 E-value=0.054 Score=60.17 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=31.8
Q ss_pred hcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCChhHHHHHHHHH
Q 036378 196 VYGYDSFRDGQLEAIKMVL----DKKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 196 ~~g~~~~~~~Q~~ai~~il----~g~d~li~apTGsGKTl~~~lp~ 237 (815)
+|.|+.-.|.|-+=+..+- .+.+.|+.||+|+|||.+.+-.+
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli 56 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLI 56 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHH
Confidence 4788888999987665433 36689999999999997654333
No 221
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.74 E-value=0.0012 Score=76.24 Aligned_cols=351 Identities=11% Similarity=0.024 Sum_probs=195.7
Q ss_pred ccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccc-cc------cc-ccCCccE
Q 036378 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF-GM------GL-DKRDVGA 493 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~-~~------GI-D~p~v~~ 493 (815)
...++|++.++.-+++....|...|+.+..++++.+..++..++.....|+.+|+++|.-. .. .+ ...++.+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 4568889999999999999999999999999999999999999999999999999999742 11 12 3456677
Q ss_pred EEEeCCC----C--CHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCee
Q 036378 494 VIHYSLP----E--SLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLC 567 (815)
Q Consensus 494 VI~~d~P----~--s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 567 (815)
||.-..- + +...-+.+++..-+. .+..-++.++.- . ...+.+.+.+.++..... -...
T Consensus 131 iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~l~lTAT-------------~-~~~~~~di~~~l~l~~~~-~~~~ 194 (470)
T TIGR00614 131 IAVDEAHCISQWGHDFRPDYKALGSLKQK-FPNVPIMALTAT-------------A-SPSVREDILRQLNLKNPQ-IFCT 194 (470)
T ss_pred EEEeCCcccCccccccHHHHHHHHHHHHH-cCCCceEEEecC-------------C-CHHHHHHHHHHcCCCCCc-EEeC
Confidence 6642211 0 111111222221111 111122222210 1 111222222222221100 0001
Q ss_pred ecchhHHHHHhC-CCHHHHHHHHHHHH---hcCcccEEeccccccceEEEecCCchhhhhhhHHHHHHHHhhCC---cCC
Q 036378 568 SLVKESASRKFD-IKEEVMLTLLTCLE---LGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSE---TKQ 640 (815)
Q Consensus 568 ~~~~~~~~~~~~-~~~~~~~~~l~~le---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~---~~~ 640 (815)
+++..++.-.+. .....+..++.++. ....++|.+.+...++.....+...+.....+|+.+....|... -..
T Consensus 195 s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~ 274 (470)
T TIGR00614 195 SFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR 274 (470)
T ss_pred CCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc
Confidence 111111110000 01123344555554 22345777766555433322222111111122222221111110 011
Q ss_pred ceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE--------ecCceEEEEEeCCCchhhhhHHHHHHH--HHHHHH
Q 036378 641 GQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYE--------LKDPAYCYTIVEVPSDFCALSAHLTKW--LSEVEN 710 (815)
Q Consensus 641 ~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~ 710 (815)
+...+=++|.+.++|+|.++|..++++-.+.....|. .+.++.+++++... |.. ....+... ...++.
T Consensus 275 g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~-d~~-~~~~~~~~~~~~~~~~ 352 (470)
T TIGR00614 275 DEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPA-DIN-RLRRLLMEEPDGQQRT 352 (470)
T ss_pred CCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechh-HHH-HHHHHHhcCCchhHHH
Confidence 2222336788999999999999999988888887776 56678888887662 211 11111111 112233
Q ss_pred HHHHHHHHHHHHHHhhhhhccccCCCCCCCCchHHHHHHhcccCCC------------CCCCCCc-cCC------CCc--
Q 036378 711 CKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGD------------DNCDVPN-KIG------QSS-- 769 (815)
Q Consensus 711 ~~~~kl~~m~~y~~~~~~~~~~~~~~~~~~~~~cl~~~ll~YFge~------------~~c~~c~-~~~------~~~-- 769 (815)
.....++.|..|+ +.+.|+++.|++||||+ ..||+|. |.. ...
T Consensus 353 ~~~~~~~~~~~~~----------------~~~~crr~~l~~~f~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~ 416 (470)
T TIGR00614 353 YKLKLYEMMEYCL----------------NSSTCRRLILLSHFGEKQLNKSFGIMGTEKCCDNCCKRLDYKTKDVTDKVY 416 (470)
T ss_pred HHHHHHHHHHHHh----------------ccccCHHHHHHHHcCCcccccccccccCCCCCCCCCCccccccCCCChhHh
Confidence 4556677777776 57889999999999994 2588887 432 111
Q ss_pred --HHHHHHHHHHHHhccCCCCCHHHHHHHHhcCCCCccch
Q 036378 770 --PFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPS 807 (815)
Q Consensus 770 --~~~~~~i~~~l~~~~~~~~~~~~ia~il~Gi~sp~~~~ 807 (815)
+...+++++++.+..+ +++...++.+|.|..+.++-.
T Consensus 417 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~ 455 (470)
T TIGR00614 417 DFGPQAQKALSAVGRLNQ-KFGMGYPIDFLRGSNSQKLRD 455 (470)
T ss_pred hHHHHHHHHHHHHHHhcC-CCchhhhHHHHhCCcchhHHh
Confidence 3567778888877654 899999999999988776654
No 222
>PRK08727 hypothetical protein; Validated
Probab=95.73 E-value=0.085 Score=54.77 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=14.7
Q ss_pred cCcccEEEEecccccccc
Q 036378 313 TSLISLVVVDEAHCVSEW 330 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~ 330 (815)
+.+.++|||||+|.+..+
T Consensus 91 l~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQ 108 (233)
T ss_pred HhcCCEEEEeCcccccCC
Confidence 456789999999998744
No 223
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.71 E-value=0.012 Score=57.78 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=44.3
Q ss_pred EEEcCCChhHHHHHHHHHHHc----CCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCceEEE
Q 036378 220 MLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLF 295 (815)
Q Consensus 220 li~apTGsGKTl~~~lp~l~~----~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili 295 (815)
++.|+-|-|||.+.-+.+... ...++|.+|..+-++..++.+...+....+.... .........+..+...|-|
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~i~f 78 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEK--KKRIGQIIKLRFNKQRIEF 78 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------CCC--B
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccccc--ccccccccccccccceEEE
Confidence 578999999998655544222 2469999999999999888887765443332210 0001111122233568888
Q ss_pred eChhhhhchhhhhhhhhcCcccEEEEecccccc
Q 036378 296 VSPERFLNADFLSIFTATSLISLVVVDEAHCVS 328 (815)
Q Consensus 296 ~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~ 328 (815)
.+|..+... ....+++|||||=.+-
T Consensus 79 ~~Pd~l~~~--------~~~~DlliVDEAAaIp 103 (177)
T PF05127_consen 79 VAPDELLAE--------KPQADLLIVDEAAAIP 103 (177)
T ss_dssp --HHHHCCT------------SCEEECTGGGS-
T ss_pred ECCHHHHhC--------cCCCCEEEEechhcCC
Confidence 898887654 2246999999999875
No 224
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.68 E-value=0.051 Score=56.52 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=15.3
Q ss_pred CCCEEEEcCCChhHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~ 234 (815)
+..+++.||+|+|||....
T Consensus 45 ~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3578999999999996443
No 225
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=0.068 Score=60.45 Aligned_cols=108 Identities=15% Similarity=0.145 Sum_probs=57.5
Q ss_pred EEcCCChhHHHHHHHHHHHc---C-CcEEEEcccHHHHHHHHHhcCCCceee-----eeccCCChHHHHH--HHHHHhcC
Q 036378 221 LVLPTGAGKSLCYQIPAMIL---P-GLTLVVCPLVALMIDQLRHLPPVIHGG-----FLSSSQRPEEVAE--TIRLIQVG 289 (815)
Q Consensus 221 i~apTGsGKTl~~~lp~l~~---~-~~~lVl~P~~~L~~q~~~~l~~~~~~~-----~i~~~~~~~~~~~--~~~~l~~g 289 (815)
..|.||||||++..-.++.. | ..-|+.|.......-....+..-+..- .+...-...++.. .+.. -+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse-hnd 80 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE-HND 80 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc-cCC
Confidence 46899999999876666543 2 235666666666665555554321110 0000000000000 0001 123
Q ss_pred CceEEEeChhhhhchhhhhhh-----hhcCcccEEEE-eccccccc
Q 036378 290 AIKVLFVSPERFLNADFLSIF-----TATSLISLVVV-DEAHCVSE 329 (815)
Q Consensus 290 ~~~Ili~TPe~L~~~~~~~~~-----~~~~~i~~lVi-DEaH~i~~ 329 (815)
.+.|+++|...|........- ..+.+..+|.+ ||||++-.
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 589999999998765433221 12445566544 99999853
No 226
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.21 Score=55.20 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=67.7
Q ss_pred CCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcc--cHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCc
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCP--LVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAI 291 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P--~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~ 291 (815)
+.++++||||+|||......+.. .+..+.++.- -+.-+.+|....... .++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~------------------------lgi 297 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT------------------------IGF 297 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhh------------------------cCC
Confidence 56789999999999765544321 2333443332 222222222222110 123
Q ss_pred eEE-EeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHH
Q 036378 292 KVL-FVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370 (815)
Q Consensus 292 ~Il-i~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i 370 (815)
.+. ..+|..+...+ ..+....+.++|+||-+-+... -......+ ..++....+...++.++||........+
T Consensus 298 pv~v~~d~~~L~~aL--~~lk~~~~~DvVLIDTaGRs~k----d~~lm~EL-~~~lk~~~PdevlLVLsATtk~~d~~~i 370 (436)
T PRK11889 298 EVIAVRDEAAMTRAL--TYFKEEARVDYILIDTAGKNYR----ASETVEEM-IETMGQVEPDYICLTLSASMKSKDMIEI 370 (436)
T ss_pred cEEecCCHHHHHHHH--HHHHhccCCCEEEEeCccccCc----CHHHHHHH-HHHHhhcCCCeEEEEECCccChHHHHHH
Confidence 433 34565554321 1111112579999998876431 12223334 4555544455567789999888776667
Q ss_pred HHHhc
Q 036378 371 MSALE 375 (815)
Q Consensus 371 ~~~l~ 375 (815)
.+.+.
T Consensus 371 ~~~F~ 375 (436)
T PRK11889 371 ITNFK 375 (436)
T ss_pred HHHhc
Confidence 66654
No 227
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.60 E-value=0.017 Score=62.58 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHH---HHc----CCcEEEEcccHHHHHHHHHhcCCCceeeeeccCC
Q 036378 202 FRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MIL----PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQ 274 (815)
Q Consensus 202 ~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~---l~~----~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~ 274 (815)
+++.|.++|.. ..+.++|.|..|||||.+.+.-+ +.. ...+|||++|++.+.+...++...+.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~~ 78 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESSD 78 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCTT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccccc
Confidence 47889999988 68899999999999998765332 222 4579999999999999988888743222111111
Q ss_pred ChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcC-cccEEEEeccc
Q 036378 275 RPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS-LISLVVVDEAH 325 (815)
Q Consensus 275 ~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~-~i~~lViDEaH 325 (815)
.. .+.........+.|+|-..+...+......... .-.+-++|+..
T Consensus 79 ~~-----~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 79 NE-----RLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -H-----HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc-----cccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 11 111111123467888988887655544433111 23566677666
No 228
>PRK04296 thymidine kinase; Provisional
Probab=95.59 E-value=0.033 Score=55.91 Aligned_cols=34 Identities=24% Similarity=0.065 Sum_probs=23.5
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCP 249 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P 249 (815)
|.-.++.||+|+|||...+--+. ..+.+++++.|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34568899999999965443332 34667888866
No 229
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.52 E-value=0.24 Score=54.58 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=73.0
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH--H---c-CCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM--I---L-PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVG 289 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l--~---~-~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g 289 (815)
++.+.++||||.|||.+-.-.|. . . ...+||..-| ...+..+.-..+.++..=
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt---------------------YRIGA~EQLk~Ya~im~v 261 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT---------------------YRIGAVEQLKTYADIMGV 261 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc---------------------chhhHHHHHHHHHHHhCC
Confidence 67889999999999976432211 1 1 1222222221 111222222233333311
Q ss_pred CceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHH
Q 036378 290 AIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRD 369 (815)
Q Consensus 290 ~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~ 369 (815)
+=.++-+|.-|.. .+..+.+.++|.||=+-+- ...+.+..-+..++....+....|.+|||...++...
T Consensus 262 -p~~vv~~~~el~~-----ai~~l~~~d~ILVDTaGrs-----~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 262 -PLEVVYSPKELAE-----AIEALRDCDVILVDTAGRS-----QYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred -ceEEecCHHHHHH-----HHHHhhcCCEEEEeCCCCC-----ccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 2334445555433 2333678899999977642 1223444444566665555667899999999999998
Q ss_pred HHHHhcC
Q 036378 370 VMSALEI 376 (815)
Q Consensus 370 i~~~l~~ 376 (815)
+...+..
T Consensus 331 i~~~f~~ 337 (407)
T COG1419 331 IIKQFSL 337 (407)
T ss_pred HHHHhcc
Confidence 8887753
No 230
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.48 E-value=0.041 Score=57.74 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=20.6
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILP 241 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~ 241 (815)
.-+.|..||.|+|||-+..+.+-...
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 45789999999999998877655443
No 231
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.44 E-value=0.035 Score=51.45 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=27.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCC---cEEEEcccHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPG---LTLVVCPLVALM 254 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~---~~lVl~P~~~L~ 254 (815)
+..+++.||+|+|||......+..... .++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 567899999999999876655544433 367776665443
No 232
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.35 E-value=0.05 Score=57.16 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=45.0
Q ss_pred cCCCCCCHHHHHHHHHHH-------cCCCEEEEcCCChhHHHHHHHHH--HHcCCcEEEEcccHHHHHHHHHhcCC
Q 036378 197 YGYDSFRDGQLEAIKMVL-------DKKSTMLVLPTGAGKSLCYQIPA--MILPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il-------~g~d~li~apTGsGKTl~~~lp~--l~~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
|.|......++.++..+. ++.++++.||+|+|||......+ +...+.-+.++++.+|+.+....+..
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc
Confidence 344445555666555443 47799999999999996443322 23457778888888888877666543
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.30 E-value=0.16 Score=55.36 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=26.2
Q ss_pred CCCEEEEcCCChhHHHHHHHH--HHHcCCcEEEEcccHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIP--AMILPGLTLVVCPLVALMIDQ 257 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp--~l~~~~~~lVl~P~~~L~~q~ 257 (815)
+.++++.|+||+|||...... .+...+..++..+..+|+.+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 578999999999999533222 123344455555556665544
No 234
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.17 E-value=0.15 Score=56.57 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=43.8
Q ss_pred ccHHHHHHHhhhhhhHHHHHHHHHhcCCC--CCCHHHHH-----HHHHHHcCCCEEEEcCCChhHHHHHH
Q 036378 172 LVEEAVRAVRDEASDENLGRLLRLVYGYD--SFRDGQLE-----AIKMVLDKKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 172 l~~~l~~~l~~~~~~~~l~~~l~~~~g~~--~~~~~Q~~-----ai~~il~g~d~li~apTGsGKTl~~~ 234 (815)
+.-+....-+...+.++..++|-+-.||+ .++.-|+- .++.+-.+.+++..||+|+|||-.|.
T Consensus 158 ~Dl~~~~~~R~~FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 158 VDLDYYKEGRKEFTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred CCHHHHHHHHhhcCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 34555666667777777778777778986 34443321 22455578899999999999997654
No 235
>PRK06893 DNA replication initiation factor; Validated
Probab=95.17 E-value=0.12 Score=53.47 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=28.3
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhc-ccceeEeeecccChhHH
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARL-NVECILAMTATATTTTL 367 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~-~~~~vl~lSAT~~~~~~ 367 (815)
+.+.++|||||+|.+.... .+...+..+ +.... ...+++++|++..+...
T Consensus 89 ~~~~dlLilDDi~~~~~~~-~~~~~l~~l----~n~~~~~~~~illits~~~p~~l 139 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNE-EWELAIFDL----FNRIKEQGKTLLLISADCSPHAL 139 (229)
T ss_pred cccCCEEEEeChhhhcCCh-HHHHHHHHH----HHHHHHcCCcEEEEeCCCChHHc
Confidence 4467999999999885210 111222232 32222 23456778888766643
No 236
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.13 E-value=0.22 Score=62.23 Aligned_cols=59 Identities=17% Similarity=0.016 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHc-CCCEEEEcCCChhHHHHHHHHH--H-HcCCcEEEEcccHHHHHHHH
Q 036378 200 DSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPA--M-ILPGLTLVVCPLVALMIDQL 258 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~-g~d~li~apTGsGKTl~~~lp~--l-~~~~~~lVl~P~~~L~~q~~ 258 (815)
..+++.|.+|+..+.. ++-++++|+-|+|||.+.-... + ..+..++.++||-.-+....
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHH
Confidence 4699999999999865 4567899999999997643322 2 23778999999977765553
No 237
>PRK08116 hypothetical protein; Validated
Probab=95.07 E-value=0.56 Score=49.77 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=25.0
Q ss_pred CEEEEcCCChhHHHHHHHHH--HHcCCcEEEEcccHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA--MILPGLTLVVCPLVALMIDQLR 259 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~--l~~~~~~lVl~P~~~L~~q~~~ 259 (815)
.+++.|++|+|||......+ +...+..++..+..+|+.+...
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~ 159 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKS 159 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 48999999999996443222 2223444455555566554433
No 238
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.02 E-value=1.8 Score=58.21 Aligned_cols=234 Identities=9% Similarity=0.065 Sum_probs=118.5
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCChhHHHHHHHHH--H-HcCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCC
Q 036378 201 SFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPA--M-ILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQR 275 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g--~d~li~apTGsGKTl~~~lp~--l-~~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~ 275 (815)
.+++.|++|+..++.. +-.++.++.|+|||.+..... + ..+..+++++||-.-+....+.... .+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g~--~A~------- 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKIPR--LAS------- 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhcc--hhh-------
Confidence 5889999999999875 467889999999997543322 2 2377899999998776665544221 110
Q ss_pred hHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHh-cccce
Q 036378 276 PEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR-LNVEC 354 (815)
Q Consensus 276 ~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~-~~~~~ 354 (815)
.+...+..+..+ .-..|-..+++ ....+..-++||||||-.++.+ .+..+++.. ..+.+
T Consensus 500 --Ti~~~l~~l~~~---~~~~tv~~fl~-----~~~~l~~~~vlIVDEAsMl~~~----------~~~~Ll~~a~~~gar 559 (1960)
T TIGR02760 500 --TFITWVKNLFND---DQDHTVQGLLD-----KSSPFSNKDIFVVDEANKLSNN----------ELLKLIDKAEQHNSK 559 (1960)
T ss_pred --hHHHHHHhhccc---ccchhHHHhhc-----ccCCCCCCCEEEEECCCCCCHH----------HHHHHHHHHhhcCCE
Confidence 111112211111 01112222221 1111346789999999988632 223344432 34567
Q ss_pred eEeeeccc------ChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhc-cccceEE
Q 036378 355 ILAMTATA------TTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS-KHYYILQ 427 (815)
Q Consensus 355 vl~lSAT~------~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~iv 427 (815)
+|++.=+- ...++..+.. -+++...+......+..+ .+... ........... ...... .....++
T Consensus 560 vVlvGD~~QL~sV~aG~~f~~L~~-~gv~t~~l~~i~rq~~~v--~i~~~--~~~~r~~~ia~---~y~~L~~~r~~tli 631 (1960)
T TIGR02760 560 LILLNDSAQRQGMSAGSAIDLLKE-GGVTTYAWVDTKQQKASV--EISEA--VDKLRVDYIAS---AWLDLTPDRQNSQV 631 (1960)
T ss_pred EEEEcChhhcCccccchHHHHHHH-CCCcEEEeecccccCcce--eeecc--CchHHHHHHHH---HHHhcccccCceEE
Confidence 77765442 2244454443 233322221111111111 11111 11111111122 222222 4445788
Q ss_pred EecchHHHHHHHHHHhh----CC------CcEEEec-CCCCHHHHHHHHHHHhcCC
Q 036378 428 ISGKHFETDLISRYLCD----NS------ISVKSYH-SGIPAKDRSRIQELFCSNK 472 (815)
Q Consensus 428 f~~s~~~~e~l~~~L~~----~g------~~v~~~h-~~~~~~~R~~i~~~F~~g~ 472 (815)
+..+.++.+.|....+. .| .....+. ..|+..++... ..|+.|.
T Consensus 632 v~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 632 LATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred EcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 88787888777766653 22 2333333 35777777643 5555544
No 239
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.96 E-value=0.059 Score=56.71 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=50.4
Q ss_pred HHHHHHhcCCceEEEEccccccccccCC--------ccEEEEeCCCCCHHHHHHHHcccCCCCCCc
Q 036378 463 RIQELFCSNKIRVVVATVAFGMGLDKRD--------VGAVIHYSLPESLEEYVQEIGRAGRDGRLS 520 (815)
Q Consensus 463 ~i~~~F~~g~~~VLVaT~~~~~GID~p~--------v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g 520 (815)
...+.|++|+.+|+|.+++.+.||-... -|+-|...+|+|....+|..||+-|.|+..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccccccc
Confidence 4567899999999999999999998763 345677899999999999999999999853
No 240
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.23 Score=56.43 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=17.5
Q ss_pred CEEEEcCCChhHHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~ 239 (815)
.+|+.||.|+|||.++.+.+-.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3699999999999877666543
No 241
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.78 E-value=0.38 Score=57.81 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHc----C---CCE-EEEcCCChhHHHHHH
Q 036378 202 FRDGQLEAIKMVLD----K---KST-MLVLPTGAGKSLCYQ 234 (815)
Q Consensus 202 ~~~~Q~~ai~~il~----g---~d~-li~apTGsGKTl~~~ 234 (815)
.|.-|.+.|..++. + ..+ +|.|+||+|||++..
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHH
Confidence 45666666654442 2 234 599999999998753
No 242
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.73 E-value=0.2 Score=57.57 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=19.2
Q ss_pred CHHHHHHHc-CCCHHHHHHHHHHHHH
Q 036378 646 DIPTVANSI-GATTIDVSNQLLNLKM 670 (815)
Q Consensus 646 ~~~~~a~~~-g~~~~~v~~~l~~l~~ 670 (815)
.+.+++... |-+.+.|...++..+.
T Consensus 404 s~~~Ig~~fg~rdhstV~~a~~~i~~ 429 (450)
T PRK00149 404 SLPEIGRAFGGRDHTTVLHAVRKIEK 429 (450)
T ss_pred CHHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 677888888 5888888877777754
No 243
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.71 E-value=0.71 Score=48.87 Aligned_cols=128 Identities=12% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcc-c--HHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCP-L--VALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVG 289 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P-~--~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g 289 (815)
+..+++++++|+|||..+..-+... +..+.++.- + .+.+.|+...... -
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~-------------------------~ 129 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT-------------------------I 129 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhh-------------------------c
Confidence 3577899999999998766444321 333443332 1 2333333322111 1
Q ss_pred CceEEE-eChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHH
Q 036378 290 AIKVLF-VSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLR 368 (815)
Q Consensus 290 ~~~Ili-~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~ 368 (815)
++.+.. .+|+.+... ...+....+.++|+||-+=+.. .-......+ ..+++...+...++.++||.......
T Consensus 130 ~~~~~~~~~~~~l~~~--l~~l~~~~~~D~ViIDt~Gr~~----~~~~~l~el-~~~~~~~~~~~~~LVl~a~~~~~d~~ 202 (270)
T PRK06731 130 GFEVIAVRDEAAMTRA--LTYFKEEARVDYILIDTAGKNY----RASETVEEM-IETMGQVEPDYICLTLSASMKSKDMI 202 (270)
T ss_pred CceEEecCCHHHHHHH--HHHHHhcCCCCEEEEECCCCCc----CCHHHHHHH-HHHHhhhCCCeEEEEEcCccCHHHHH
Confidence 234433 345544322 1112213468999999987642 111222333 44444444445678899998887776
Q ss_pred HHHHHhc
Q 036378 369 DVMSALE 375 (815)
Q Consensus 369 ~i~~~l~ 375 (815)
.+.+.+.
T Consensus 203 ~~~~~f~ 209 (270)
T PRK06731 203 EIITNFK 209 (270)
T ss_pred HHHHHhC
Confidence 6666554
No 244
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.65 E-value=0.14 Score=52.61 Aligned_cols=19 Identities=32% Similarity=0.281 Sum_probs=16.0
Q ss_pred CCCEEEEcCCChhHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~ 234 (815)
+..+++.||+|+|||....
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5689999999999997554
No 245
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.63 E-value=0.16 Score=52.16 Aligned_cols=49 Identities=8% Similarity=0.163 Sum_probs=26.6
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChh
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~ 365 (815)
+...++|+||.+|.+... ......+..++..+. ..+.++|+.|..++.+
T Consensus 95 ~~~~DlL~iDDi~~l~~~-~~~q~~lf~l~n~~~---~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGK-QRTQEELFHLFNRLI---ESGKQLILTSDRPPSE 143 (219)
T ss_dssp HCTSSEEEEETGGGGTTH-HHHHHHHHHHHHHHH---HTTSEEEEEESS-TTT
T ss_pred hhcCCEEEEecchhhcCc-hHHHHHHHHHHHHHH---hhCCeEEEEeCCCCcc
Confidence 568999999999998632 011223333322222 2345666666555543
No 246
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=94.62 E-value=0.043 Score=57.04 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=62.3
Q ss_pred CCcEEEEcccHHHHHHHHHhcCCCc-eee-eeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPPVI-HGG-FLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~~~-~~~-~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
.+.+|||+..--=+.++++.++.+- +.. .....-..-.+.++...+..+.++|.||||+||..++..+.+. +.++.+
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~-l~~l~~ 204 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALS-LSNLKR 204 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCC-cccCeE
Confidence 4678999998877889999888752 111 1111112224556677778888999999999999988777777 889999
Q ss_pred EEEecccc
Q 036378 319 VVVDEAHC 326 (815)
Q Consensus 319 lViDEaH~ 326 (815)
||||--|.
T Consensus 205 ivlD~s~~ 212 (252)
T PF14617_consen 205 IVLDWSYL 212 (252)
T ss_pred EEEcCCcc
Confidence 99997653
No 247
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.50 E-value=0.14 Score=47.46 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=16.4
Q ss_pred EEEEcCCChhHHHHHHHHHHHc
Q 036378 219 TMLVLPTGAGKSLCYQIPAMIL 240 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~l~~ 240 (815)
+++.||.|+|||.....-+-..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5899999999998655444433
No 248
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.45 E-value=0.16 Score=61.28 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=66.2
Q ss_pred ccccceEEEecchHHHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccc-cccccccCCccEE
Q 036378 420 SKHYYILQISGKHFETDLISRYLCD----NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA-FGMGLDKRDVGAV 494 (815)
Q Consensus 420 ~~~~~~ivf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~-~~~GID~p~v~~V 494 (815)
..+.++++.+.|+.-+.+.++.+++ .|+.+..+||+++..+|.++++.+.+|+.+|+|+|.+ +...+.+.++.+|
T Consensus 308 ~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lv 387 (681)
T PRK10917 308 EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLV 387 (681)
T ss_pred HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceE
Confidence 3566889999999998887777654 4799999999999999999999999999999999986 4556788999998
Q ss_pred EE
Q 036378 495 IH 496 (815)
Q Consensus 495 I~ 496 (815)
|.
T Consensus 388 VI 389 (681)
T PRK10917 388 II 389 (681)
T ss_pred EE
Confidence 85
No 249
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.35 E-value=0.54 Score=53.96 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=17.8
Q ss_pred CCEEEEcCCChhHHHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l 238 (815)
+.+|+.||.|+|||.+..+.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 3689999999999987766553
No 250
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.07 E-value=0.21 Score=53.08 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=19.0
Q ss_pred CcccEEEEeccccccccccCchHHHHHH
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRL 341 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i 341 (815)
-++++|||||.|.++.....-+..++..
T Consensus 144 ~~vrmLIIDE~H~lLaGs~~~qr~~Ln~ 171 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGSYRKQREFLNA 171 (302)
T ss_pred cCCcEEEeechHHHhcccHHHHHHHHHH
Confidence 3789999999999886533333334444
No 251
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.03 E-value=0.24 Score=54.05 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=19.7
Q ss_pred CEEEEcCCChhHHHHHHHHHHHcCCc
Q 036378 218 STMLVLPTGAGKSLCYQIPAMILPGL 243 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~~~~~ 243 (815)
+.|+.||.|+|||..+.+.+-..+..
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~ 75 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAA 75 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCc
Confidence 78999999999998776655444433
No 252
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.02 E-value=0.61 Score=52.38 Aligned_cols=60 Identities=27% Similarity=0.262 Sum_probs=33.3
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l 238 (815)
.+|++++-.++..+.+.+.....-...-+-..+|... .+.+|+.||+|+|||+.....+-
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~--------------p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEP--------------PKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCC--------------CCceEEECCCCCChHHHHHHHHH
Confidence 3566776666666666653211111111112234322 35699999999999986544433
No 253
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.98 E-value=0.12 Score=61.39 Aligned_cols=140 Identities=20% Similarity=0.200 Sum_probs=0.0
Q ss_pred EEEEcCCChhHHHHHHHHHH------H------cCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQIPAM------I------LPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLI 286 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~l------~------~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l 286 (815)
.|+.-.-|-|||..-+..++ . ..+.+|||+|+ +++.||..++.+......+......+ .....-
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g---r~kd~~ 230 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG---RTKDKS 230 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc---cccccc
Q ss_pred hcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhH
Q 036378 287 QVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366 (815)
Q Consensus 287 ~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~ 366 (815)
....++||++|+..+.+ ..+. --.+-.+|+||||.+.. ........--......--++|+|+....
T Consensus 231 el~~~dVVltTy~il~~----~~l~-~i~w~Riildea~~ikn---------~~tq~~~a~~~L~a~~RWcLtgtPiqn~ 296 (674)
T KOG1001|consen 231 ELNSYDVVLTTYDILKN----SPLV-KIKWLRIVLDEAHTIKN---------KDTQIFKAVCQLDAKYRWCLTGTPIQNN 296 (674)
T ss_pred hhcCCceEEeeHHHhhc----cccc-ceeEEEEEeccccccCC---------cchHhhhhheeeccceeeeecCChhhhh
Q ss_pred HHHHHHHhcC
Q 036378 367 LRDVMSALEI 376 (815)
Q Consensus 367 ~~~i~~~l~~ 376 (815)
..++...+.+
T Consensus 297 ~~~lysl~~f 306 (674)
T KOG1001|consen 297 LDELYSLFKF 306 (674)
T ss_pred HHHHHHHHHH
No 254
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.96 E-value=0.38 Score=46.07 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=22.9
Q ss_pred EEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHHH
Q 036378 219 TMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVAL 253 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~L 253 (815)
+++.|++|+|||......+. ..++.++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 67899999999975443332 235667776665443
No 255
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.87 E-value=0.32 Score=55.06 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=14.5
Q ss_pred CCEEEEcCCChhHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~ 234 (815)
..+++.||+|+|||....
T Consensus 137 n~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 357899999999997543
No 256
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.86 E-value=0.28 Score=51.54 Aligned_cols=38 Identities=26% Similarity=0.237 Sum_probs=27.4
Q ss_pred cccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHH
Q 036378 163 YRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLC 232 (815)
Q Consensus 163 ~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~ 232 (815)
...+|+++++++-+.+-+... ..=+|+.||||||||.+
T Consensus 104 ~i~~~e~LglP~i~~~~~~~~--------------------------------~GLILVTGpTGSGKSTT 141 (353)
T COG2805 104 KIPTLEELGLPPIVRELAESP--------------------------------RGLILVTGPTGSGKSTT 141 (353)
T ss_pred cCCCHHHcCCCHHHHHHHhCC--------------------------------CceEEEeCCCCCcHHHH
Confidence 346888999988777633331 23478889999999965
No 257
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.86 E-value=0.6 Score=50.77 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=30.6
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHH---HhcccceeEeeecccChhHHHHHHHHh
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR---ARLNVECILAMTATATTTTLRDVMSAL 374 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~---~~~~~~~vl~lSAT~~~~~~~~i~~~l 374 (815)
.++++|+||=+-++..- .+....+..+ ..+.. ...+...++.++||...+....+..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~-~~l~~eL~~~-~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNK-TNLMEELKKI-KRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCC-HHHHHHHHHH-HHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 46788888887765310 0111222222 11111 122344688999997776666554443
No 258
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.85 E-value=0.74 Score=53.24 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=17.6
Q ss_pred CEEEEcCCChhHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l 238 (815)
.+|+.||.|+|||.+..+.+-
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999987766654
No 259
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.82 E-value=2.7 Score=48.44 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=32.0
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHh
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l 374 (815)
+.+.++|+||.+-.... .......+.. +........+++++++........+.+.+
T Consensus 426 l~~~DLVLIDTaG~s~~-----D~~l~eeL~~-L~aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 426 LRDYKLVLIDTAGMGQR-----DRALAAQLNW-LRAARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred hccCCEEEecCCCcchh-----hHHHHHHHHH-HHHhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 45789999999876421 1111211121 22223445688899998776666555544
No 260
>PRK09183 transposase/IS protein; Provisional
Probab=93.80 E-value=0.37 Score=50.82 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=25.5
Q ss_pred HHcCCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEcccHHHHH
Q 036378 213 VLDKKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLVALMI 255 (815)
Q Consensus 213 il~g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~ 255 (815)
+-.+.++++.||+|+|||......+ ...+..++++ +..+|..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHH
Confidence 4467899999999999996443322 2234445444 3344443
No 261
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.76 E-value=1.3 Score=53.36 Aligned_cols=58 Identities=21% Similarity=0.151 Sum_probs=34.2
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhc
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
+.+.++|+||=+-+.. ........+..+.....+...++.++||...+...++.+.+.
T Consensus 261 ~~~~D~VLIDTAGRs~-----~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~ 318 (767)
T PRK14723 261 LGDKHLVLIDTVGMSQ-----RDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR 318 (767)
T ss_pred hcCCCEEEEeCCCCCc-----cCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHh
Confidence 4456788888776542 112222332333333445557888999988887777766553
No 262
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.37 Score=54.19 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=34.0
Q ss_pred CcccEEEEecccccccc---ccCchHHHHHHHHHHHHHhcccc-eeEeeecccChhHH
Q 036378 314 SLISLVVVDEAHCVSEW---SHNFRPSYMRLRASLLRARLNVE-CILAMTATATTTTL 367 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~---g~~fr~~~~~i~~~~~~~~~~~~-~vl~lSAT~~~~~~ 367 (815)
+.+++||||+..++.+| |.-|....+..+.-++++.++.. +++.+.-|-..+++
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL 654 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVL 654 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHH
Confidence 57899999999999998 44555555555455555555543 44444444444443
No 263
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.66 E-value=0.41 Score=54.75 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=13.6
Q ss_pred cCcccEEEEecccccc
Q 036378 313 TSLISLVVVDEAHCVS 328 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~ 328 (815)
+..+++|||||+|.+.
T Consensus 204 ~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 204 ICQNDVLIIDDVQFLS 219 (450)
T ss_pred hccCCEEEEecccccc
Confidence 4578999999999885
No 264
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=93.64 E-value=0.016 Score=67.89 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=53.6
Q ss_pred ccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhc---CCceEEEEccccccc
Q 036378 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS---NKIRVVVATVAFGMG 485 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~---g~~~VLVaT~~~~~G 485 (815)
+.++++|..-.+..+.+..++...+ ....+.|..+..+|...+++|.. .....|.+|.+-|.|
T Consensus 631 ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 631 GHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred chhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 5677888888888888888888888 88999999999999999999983 456688999988766
No 265
>PF13173 AAA_14: AAA domain
Probab=93.62 E-value=0.36 Score=44.87 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.6
Q ss_pred CCCEEEEcCCChhHHHH
Q 036378 216 KKSTMLVLPTGAGKSLC 232 (815)
Q Consensus 216 g~d~li~apTGsGKTl~ 232 (815)
++-+++.||.|+|||..
T Consensus 2 ~~~~~l~G~R~vGKTtl 18 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTL 18 (128)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999999973
No 266
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.59 E-value=0.47 Score=54.12 Aligned_cols=17 Identities=6% Similarity=0.174 Sum_probs=14.2
Q ss_pred cCcccEEEEeccccccc
Q 036378 313 TSLISLVVVDEAHCVSE 329 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~ 329 (815)
+..+++|+|||+|.+..
T Consensus 200 ~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 200 YRNVDALFIEDIEVFSG 216 (445)
T ss_pred cccCCEEEEcchhhhcC
Confidence 45789999999999864
No 267
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.49 E-value=0.28 Score=57.08 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=69.5
Q ss_pred HHHHHhhccccceEEEecchHHH----HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccc-cccccc
Q 036378 413 VFSFHRSSKHYYILQISGKHFET----DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA-FGMGLD 487 (815)
Q Consensus 413 l~~l~~~~~~~~~ivf~~s~~~~----e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~-~~~GID 487 (815)
+..+.....+.++...+.|.--| +.+.+.|...|+.+..+.|.+...+|.++++...+|+++|+|.|-| +.-.++
T Consensus 302 laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~ 381 (677)
T COG1200 302 LAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVE 381 (677)
T ss_pred HHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhccee
Confidence 33344445677888888887555 4555666667999999999999999999999999999999999998 577999
Q ss_pred cCCccEEEE
Q 036378 488 KRDVGAVIH 496 (815)
Q Consensus 488 ~p~v~~VI~ 496 (815)
+.+..+||.
T Consensus 382 F~~LgLVIi 390 (677)
T COG1200 382 FHNLGLVII 390 (677)
T ss_pred ecceeEEEE
Confidence 999999987
No 268
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.43 E-value=0.79 Score=53.23 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=16.7
Q ss_pred CEEEEcCCChhHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l 238 (815)
-+|+.||.|+|||.+..+.+-
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 368999999999987665553
No 269
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.41 E-value=0.3 Score=58.53 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=65.5
Q ss_pred cccceEEEecchHHHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccc-ccccccCCccEEE
Q 036378 421 KHYYILQISGKHFETDLISRYLCD----NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF-GMGLDKRDVGAVI 495 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~-~~GID~p~v~~VI 495 (815)
.+.++++.+.|+.-++++++.+++ .|+.+..+||+++..+|..+++...+|+.+|||+|... ...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 466888999999999888777664 47999999999999999999999999999999999875 4467788899888
Q ss_pred E
Q 036378 496 H 496 (815)
Q Consensus 496 ~ 496 (815)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 5
No 270
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.36 E-value=1.1 Score=47.55 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=25.7
Q ss_pred CCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEc--ccHHHHHHHHHhc
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVC--PLVALMIDQLRHL 261 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~--P~~~L~~q~~~~l 261 (815)
+-+++++|+|+|||.+..-.+. ..+.+++++. +.+.-+.++...+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~ 122 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEW 122 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHH
Confidence 4567889999999975543332 2244565554 2344444444333
No 271
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.21 E-value=0.45 Score=56.60 Aligned_cols=163 Identities=20% Similarity=0.231 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCC--CEEEEcCCChhHHHHHHHHH---HHcC--CcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChH
Q 036378 205 GQLEAIKMVLDKK--STMLVLPTGAGKSLCYQIPA---MILP--GLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPE 277 (815)
Q Consensus 205 ~Q~~ai~~il~g~--d~li~apTGsGKTl~~~lp~---l~~~--~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 277 (815)
-|.+.+..+++++ -+++.|.-|=|||.+.-+.+ .... ..++|.+|+.+-++...+-+.+++......-.....
T Consensus 218 ~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d 297 (758)
T COG1444 218 EALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPD 297 (758)
T ss_pred HHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccc
Confidence 3334445555543 56788999999997755333 2334 489999999999888887777644333221111111
Q ss_pred HHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEe
Q 036378 278 EVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILA 357 (815)
Q Consensus 278 ~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~ 357 (815)
.... ..........|=|.+|.... . .-++||||||=-|- .-++..++. .-+.++
T Consensus 298 ~~g~-~~~~~~~~~~i~y~~P~~a~-~----------~~DllvVDEAAaIp----------lplL~~l~~----~~~rv~ 351 (758)
T COG1444 298 ALGE-IREVSGDGFRIEYVPPDDAQ-E----------EADLLVVDEAAAIP----------LPLLHKLLR----RFPRVL 351 (758)
T ss_pred cccc-eeeecCCceeEEeeCcchhc-c----------cCCEEEEehhhcCC----------hHHHHHHHh----hcCceE
Confidence 0000 11111123456777776543 1 26899999998774 223233332 224578
Q ss_pred eecccCh------hHHHHHHHHhcCCccceeeccccCCCeeE
Q 036378 358 MTATATT------TTLRDVMSALEIPLSNLIQKAQLRDNLQL 393 (815)
Q Consensus 358 lSAT~~~------~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 393 (815)
||.|... .....+.+.+.......+..-.+..++.|
T Consensus 352 ~sTTIhGYEGtGRgF~lkf~~~l~~~~~~~~~~~~l~ePIRy 393 (758)
T COG1444 352 FSTTIHGYEGTGRGFSLKFLARLRKQRDTTLHELELEEPIRY 393 (758)
T ss_pred EEeeecccccCChHHHHHHHHHhcccccceEEEEeccCCccc
Confidence 8888753 33334455554433333333334444444
No 272
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.20 E-value=0.45 Score=54.32 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=20.7
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHH
Q 036378 646 DIPTVANSIGATTIDVSNQLLNLKM 670 (815)
Q Consensus 646 ~~~~~a~~~g~~~~~v~~~l~~l~~ 670 (815)
....++...|.+-+.|...++..+.
T Consensus 389 s~~~Ig~~fgr~hstV~~a~~~i~~ 413 (440)
T PRK14088 389 SLRTIAEKFNRSHPVVVDSVKKVKD 413 (440)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6788888889888888888887765
No 273
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.18 E-value=0.23 Score=59.83 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=56.0
Q ss_pred HHHhhccccceEEEecchHHHHHHHHHHhhC----C-CcEEE-ecCCCCHHHHHHHHHHHhcCCceEEEEccccc
Q 036378 415 SFHRSSKHYYILQISGKHFETDLISRYLCDN----S-ISVKS-YHSGIPAKDRSRIQELFCSNKIRVVVATVAFG 483 (815)
Q Consensus 415 ~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~----g-~~v~~-~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~ 483 (815)
.+.-..++.++.+++.|..-+.++++.|.+. + ..+.. ||+.|+.+++++++++|.+|..+|||+|+.|-
T Consensus 118 sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 118 SLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred HHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 3344445688899999998888888888753 2 44433 99999999999999999999999999999874
No 274
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.15 E-value=0.73 Score=45.65 Aligned_cols=43 Identities=16% Similarity=0.065 Sum_probs=27.6
Q ss_pred EEEEcCCChhHHHHHH-H--HHHHcCCcEEEEcccHHHHHHHHHhcC
Q 036378 219 TMLVLPTGAGKSLCYQ-I--PAMILPGLTLVVCPLVALMIDQLRHLP 262 (815)
Q Consensus 219 ~li~apTGsGKTl~~~-l--p~l~~~~~~lVl~P~~~L~~q~~~~l~ 262 (815)
+++.||+|+|||...+ + ..+..+..+++++.. +-..+..+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~ 47 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAE 47 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHH
Confidence 6899999999996443 2 233557778877643 44455544443
No 275
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.11 E-value=0.15 Score=61.38 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHH--HHHHH-c----CCcEEEEcccHHHHHHHHHhcCCCceeeeeccC
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQ--IPAMI-L----PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSS 273 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~--lp~l~-~----~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~ 273 (815)
.+++.|++|+.. ....++|.|..|||||.+.. +.-+. . +..+|+|+.|+..+.+..+++.+.+...
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~----- 74 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK----- 74 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc-----
Confidence 478999999875 35688999999999996543 22222 1 3469999999999999988887643210
Q ss_pred CChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcC-cccEEEEecccc
Q 036378 274 QRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS-LISLVVVDEAHC 326 (815)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~-~i~~lViDEaH~ 326 (815)
....+.|+|-..+...+.......+. .-.+-|+|+.+.
T Consensus 75 ---------------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 75 ---------------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred ---------------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 01246677877776544333221111 123556676553
No 276
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.02 E-value=0.87 Score=55.76 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.2
Q ss_pred CEEEEcCCChhHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l 238 (815)
-+|+.+|.|+|||.+..+.+-
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 368999999999988766654
No 277
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.98 E-value=0.95 Score=51.32 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=30.4
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHH
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i 370 (815)
...++||||.+-+.. .......-+..+.....+...++.+.||...+..+.+
T Consensus 174 ~~~DvVIIDTAGr~~-----~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a 225 (437)
T PRK00771 174 KKADVIIVDTAGRHA-----LEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA 225 (437)
T ss_pred hcCCEEEEECCCccc-----chHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH
Confidence 345899999996542 2223332223444444455678888888876554433
No 278
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.90 E-value=1.3 Score=52.45 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=17.3
Q ss_pred CEEEEcCCChhHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l 238 (815)
.+|+.||.|+|||.+..+.+-
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999987766553
No 279
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.89 E-value=0.79 Score=54.67 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=15.7
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
-+|+.||.|+|||.+..+.+
T Consensus 40 AyLFtGPpGvGKTTlAriLA 59 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFA 59 (830)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35899999999997665544
No 280
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.88 E-value=0.89 Score=51.16 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=34.9
Q ss_pred cCcccEEEEeccccccccccCch-HHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhc
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFR-PSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr-~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
+.+.++++||.+-+ ..+ ..+...+..+.....+...+|.++||.......++...+.
T Consensus 267 l~~~d~VLIDTaGr------sqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 267 LRGKHMVLIDTVGM------SQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred hcCCCEEEecCCCC------CcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 55778899998632 222 2222332333222234457899999999998888877664
No 281
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.87 E-value=1.2 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=16.8
Q ss_pred CEEEEcCCChhHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l 238 (815)
.+|+.||.|+|||.++..-+-
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987665543
No 282
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.86 E-value=0.79 Score=49.11 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=16.1
Q ss_pred CCCEEEEcCCChhHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~ 234 (815)
+.++++.||+|+|||.+..
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4589999999999998763
No 283
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.78 E-value=0.64 Score=52.71 Aligned_cols=21 Identities=38% Similarity=0.384 Sum_probs=16.7
Q ss_pred CEEEEcCCChhHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l 238 (815)
.+++.||+|+|||.....-+-
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999986655433
No 284
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.77 E-value=0.82 Score=53.86 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=17.3
Q ss_pred CEEEEcCCChhHHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~ 239 (815)
-+|+.||.|+|||.++.+.+-.
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4599999999999877655543
No 285
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.77 E-value=0.89 Score=51.13 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCH---HHHHHHHHHHHHcCcEEEE
Q 036378 647 IPTVANSIGATT---IDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 647 ~~~~a~~~g~~~---~~v~~~l~~l~~~g~i~~~ 677 (815)
...++..+|+++ .++...|..|+..|+|...
T Consensus 325 y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 325 YKELCEELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 345667788755 8899999999999999876
No 286
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=0.32 Score=57.01 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.0
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
-+|+.||.|.|||.+..+.+
T Consensus 40 A~LFtGP~GvGKTTLAriLA 59 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILA 59 (700)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45899999999997765554
No 287
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=0.88 Score=55.34 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=16.6
Q ss_pred EEEEcCCChhHHHHHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~l~ 239 (815)
+|+.||.|+|||.+..+.+-.
T Consensus 41 yLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 489999999999876665543
No 288
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.76 E-value=0.73 Score=57.19 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHH------------------------------------HHHHcCCcEE
Q 036378 202 FRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQI------------------------------------PAMILPGLTL 245 (815)
Q Consensus 202 ~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~l------------------------------------p~l~~~~~~l 245 (815)
|-..|.+.+..+..+.++|+...|=.-+|+...+ -.+..+++++
T Consensus 585 fgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~qv~ 664 (926)
T TIGR00580 585 FGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVF 664 (926)
T ss_pred cchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCCeEE
Confidence 4445666666555566777777776666653211 0112377899
Q ss_pred EEcccHHHHHHHHHhcCC---CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEe
Q 036378 246 VVCPLVALMIDQLRHLPP---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVD 322 (815)
Q Consensus 246 Vl~P~~~L~~q~~~~l~~---~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViD 322 (815)
|++|+++-+...++.|.+ ..+...+++.+...++...+..+..|+++|||+|. .....+. +.++++||++
T Consensus 665 if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~------iie~GID-Ip~v~~VIi~ 737 (926)
T TIGR00580 665 YVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT------IIETGID-IPNANTIIIE 737 (926)
T ss_pred EEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhcccc-cccCCEEEEe
Confidence 999999888887777776 35678899999999999999999999999999994 1222333 7789999999
Q ss_pred ccccc
Q 036378 323 EAHCV 327 (815)
Q Consensus 323 EaH~i 327 (815)
.++..
T Consensus 738 ~a~~~ 742 (926)
T TIGR00580 738 RADKF 742 (926)
T ss_pred cCCCC
Confidence 99864
No 289
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.74 E-value=0.55 Score=49.80 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=53.6
Q ss_pred HcCCCEEEEcCCChhHHHHH-HHHHH--Hc-CCcEEEEcccHHHHHHHHHhcCCC---ceeeee--ccCCChHHHHHHHH
Q 036378 214 LDKKSTMLVLPTGAGKSLCY-QIPAM--IL-PGLTLVVCPLVALMIDQLRHLPPV---IHGGFL--SSSQRPEEVAETIR 284 (815)
Q Consensus 214 l~g~d~li~apTGsGKTl~~-~lp~l--~~-~~~~lVl~P~~~L~~q~~~~l~~~---~~~~~i--~~~~~~~~~~~~~~ 284 (815)
..|.-+++.|++|+|||... ++..- .. +..+++++-- .-..+...++... ...... .......+.....+
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFD 106 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHHH
Confidence 34778899999999999643 33321 22 5567777642 2223333333221 111000 01222333333334
Q ss_pred HHhc-CCceEEEe-----ChhhhhchhhhhhhhhcCcccEEEEeccccccc
Q 036378 285 LIQV-GAIKVLFV-----SPERFLNADFLSIFTATSLISLVVVDEAHCVSE 329 (815)
Q Consensus 285 ~l~~-g~~~Ili~-----TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~ 329 (815)
.+.. +.. +++- +++.+...+... .. -.++++||||..+.+..
T Consensus 107 ~~~~~~~l-~i~d~~~~~~~~~i~~~i~~~-~~-~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 107 EFEGTGRL-FMYDSFGEYSMDSVLEKVRYM-AV-SHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HhcCCCcE-EEEcCCCccCHHHHHHHHHHH-Hh-cCCceEEEECCHHHHhc
Confidence 4432 222 2222 223333222111 11 23689999999998864
No 290
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.74 E-value=0.61 Score=49.27 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.4
Q ss_pred CCEEEEcCCChhHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp 236 (815)
.++++.||+|+|||....+.
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47899999999999866444
No 291
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.66 E-value=0.59 Score=54.76 Aligned_cols=25 Identities=12% Similarity=0.321 Sum_probs=18.4
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHH
Q 036378 646 DIPTVANSIGATTIDVSNQLLNLKM 670 (815)
Q Consensus 646 ~~~~~a~~~g~~~~~v~~~l~~l~~ 670 (815)
.+..|+...|-+.+.|...++...+
T Consensus 571 Sl~~IG~~FgRdHSTV~~A~~kI~~ 595 (617)
T PRK14086 571 SLPKIGQQFGRDHTTVMHADRKIRA 595 (617)
T ss_pred CHHHHHHHhCCChhHHHHHHHHHHH
Confidence 5777888888777777777776654
No 292
>PHA02533 17 large terminase protein; Provisional
Probab=92.50 E-value=0.28 Score=57.11 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH-----HcCCcEEEEcccHHHHHHHHHhcCC
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM-----ILPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l-----~~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
.+.|.|++++..+..++-.++..+=..|||.+....++ ..+..+++++|+..-+...++.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 47899999999887677778888999999976654332 2256899999999998888777764
No 293
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=92.50 E-value=1.5 Score=39.99 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=63.3
Q ss_pred CceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe-----cCceEEEEEeCCCchhhhhHHHHHHHHHHHHHHHHH
Q 036378 640 QGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL-----KDPAYCYTIVEVPSDFCALSAHLTKWLSEVENCKVR 714 (815)
Q Consensus 640 ~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 714 (815)
...+.+.++++|..+..++.+++..|+.|++.|+|.|.. ....++|+. .+ .++..... .+..+..
T Consensus 15 ~~~~~vtl~elA~~l~cS~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~--~~---~~~~~~~~-----~~~l~~g 84 (115)
T PF12793_consen 15 GQPVEVTLDELAELLFCSRRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLK--SP---EELLEQQA-----EELLEQG 84 (115)
T ss_pred CCCcceeHHHHHHHhCCCHHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEee--CH---HHHHHHHH-----HHHHHcC
Confidence 345677899999999999999999999999999999993 223444433 21 12222222 2234557
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCCCCchHHHHHHhcccCC
Q 036378 715 KLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRG 755 (815)
Q Consensus 715 kl~~m~~y~~~~~~~~~~~~~~~~~~~~~cl~~~ll~YFge 755 (815)
+++..+.++.. ...-+...|..|.|.
T Consensus 85 ~~~~a~~ll~~---------------~~~~~~~lL~~~lg~ 110 (115)
T PF12793_consen 85 KYEQALQLLDF---------------DQRQLAQLLQQTLGV 110 (115)
T ss_pred CHHHHHHHHHh---------------CHHHHHHHHHHHHhH
Confidence 78888888852 456777888888774
No 294
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.42 E-value=1.1 Score=53.08 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.0
Q ss_pred CEEEEcCCChhHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l 238 (815)
.+|+.||.|+|||.+..+.+-
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 579999999999987665543
No 295
>CHL00181 cbbX CbbX; Provisional
Probab=92.38 E-value=1 Score=48.27 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=17.6
Q ss_pred CCCEEEEcCCChhHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~ 237 (815)
|.++++.||+|+|||.++..-+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4568999999999998765543
No 296
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.34 E-value=0.85 Score=55.05 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=65.1
Q ss_pred ccceEEEecchHHHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeC
Q 036378 422 HYYILQISGKHFETDLISRYLCD-NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYS 498 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~-~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d 498 (815)
+.++++.+.++.-+.++.+.|++ .|..+..+||+++..+|.+...+..+|+.+|+|+|..... +.+.++.+||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 56789999999999999999976 4788999999999999999999999999999999985432 5677888888544
No 297
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.17 E-value=0.46 Score=61.40 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCChhHHHHHH--HHHHH-----cCCcEEEEcccHHHHHHHH
Q 036378 201 SFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQ--IPAMI-----LPGLTLVVCPLVALMIDQL 258 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g--~d~li~apTGsGKTl~~~--lp~l~-----~~~~~lVl~P~~~L~~q~~ 258 (815)
.+++.|++|+..++.. +-+++.|..|+|||.+.. +-++. .+..++.++||-.-+....
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH
Confidence 6899999999999965 678899999999997642 22221 1456888999988876664
No 298
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.12 E-value=0.25 Score=60.23 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHH--HHHHH-c----CCcEEEEcccHHHHHHHHHhcCCCceeeeecc
Q 036378 200 DSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQ--IPAMI-L----PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSS 272 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~--lp~l~-~----~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~ 272 (815)
..++|.|++|+.. ....++|.|..|||||.+.. +.-+. . +..+|+|+-|+..+....+++.+.+...
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~---- 76 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS---- 76 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc----
Confidence 4689999999875 35689999999999996532 22222 1 3579999999999999999887743210
Q ss_pred CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcC-cccEEEEecccc
Q 036378 273 SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS-LISLVVVDEAHC 326 (815)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~-~i~~lViDEaH~ 326 (815)
...+.|+|-..+...+......... .-.+-|+|+.+.
T Consensus 77 -----------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 114 (715)
T TIGR01075 77 -----------------ARGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDDQ 114 (715)
T ss_pred -----------------ccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 1246678877776544443222111 123556777654
No 299
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.04 E-value=1.5 Score=47.53 Aligned_cols=17 Identities=35% Similarity=0.260 Sum_probs=14.6
Q ss_pred CCCEEEEcCCChhHHHH
Q 036378 216 KKSTMLVLPTGAGKSLC 232 (815)
Q Consensus 216 g~d~li~apTGsGKTl~ 232 (815)
++.+++.|++|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999954
No 300
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.96 E-value=0.92 Score=52.72 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=64.8
Q ss_pred cccceEEEecchHHHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeC
Q 036378 421 KHYYILQISGKHFETDLISRYLCDN-SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYS 498 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~-g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d 498 (815)
.+.++++.+.++.-+.++++.|++. |..+..+||+++..+|.++..+..+|+.+|+|+|..+-. ..+.++.+||.-+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 3567888899999999999999864 678999999999999999999999999999999976443 4677888887543
No 301
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.94 E-value=1.4 Score=50.72 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=16.0
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
.+|+.||.|+|||....+-+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999997765554
No 302
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.89 E-value=0.88 Score=49.10 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHH-cCCCEEEEcCCChhHHHHHHHHH--HHc---CCcEEEEcccHHHH
Q 036378 202 FRDGQLEAIKMVL-DKKSTMLVLPTGAGKSLCYQIPA--MIL---PGLTLVVCPLVALM 254 (815)
Q Consensus 202 ~~~~Q~~ai~~il-~g~d~li~apTGsGKTl~~~lp~--l~~---~~~~lVl~P~~~L~ 254 (815)
+++.|.+.+..++ .+++++++|+||||||...-..+ +.. ..+++++--..||.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc
Confidence 5566666666554 46699999999999997532211 211 45678887777774
No 303
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.85 E-value=1.4 Score=52.15 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.9
Q ss_pred EEEEcCCChhHHHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~ 237 (815)
+|+.||.|+|||.+..+.+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998776654
No 304
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.83 E-value=0.94 Score=46.66 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=14.5
Q ss_pred CCCEEEEcCCChhHHHH
Q 036378 216 KKSTMLVLPTGAGKSLC 232 (815)
Q Consensus 216 g~d~li~apTGsGKTl~ 232 (815)
++.+++.||+|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45789999999999954
No 305
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.74 E-value=2 Score=50.66 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=16.3
Q ss_pred EEEEcCCChhHHHHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~l 238 (815)
+|+.||.|+|||.+..+.+-
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999987665553
No 306
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.74 E-value=0.72 Score=61.86 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHcCC--CEEEEcCCChhHHHHHH---HHH---HH-cCCcEEEEcccHHHHHHHH
Q 036378 200 DSFRDGQLEAIKMVLDKK--STMLVLPTGAGKSLCYQ---IPA---MI-LPGLTLVVCPLVALMIDQL 258 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~--d~li~apTGsGKTl~~~---lp~---l~-~~~~~lVl~P~~~L~~q~~ 258 (815)
..+++.|++|+..++.+. -+++.|..|+|||.... -++ +. .+..++.++||-.-+....
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH
Confidence 468999999999998764 56788999999997651 112 22 2567888999987776654
No 307
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=91.71 E-value=0.26 Score=60.02 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHH--HHHHH-----cCCcEEEEcccHHHHHHHHHhcCCCceeeeecc
Q 036378 200 DSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQ--IPAMI-----LPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSS 272 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~--lp~l~-----~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~ 272 (815)
..++|-|++|+... ...++|.|..|||||.+.. +.-+. .+..+|+|+-|+..+.+..+++.+.+...
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~---- 81 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS---- 81 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC----
Confidence 35899999998753 5689999999999996532 22222 14579999999999999998887743210
Q ss_pred CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcC-cccEEEEecccc
Q 036378 273 SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS-LISLVVVDEAHC 326 (815)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~-~i~~lViDEaH~ 326 (815)
...+.|+|-..+...+......... .-.+-|+|+.+.
T Consensus 82 -----------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 119 (721)
T PRK11773 82 -----------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQ 119 (721)
T ss_pred -----------------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 1246678887776654443322111 123557777653
No 308
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.69 E-value=0.24 Score=58.14 Aligned_cols=63 Identities=19% Similarity=0.092 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCChhHHHHHHHHHH----HcCCcEEEEcccHHHHHHHH-HhcCC
Q 036378 201 SFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAM----ILPGLTLVVCPLVALMIDQL-RHLPP 263 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g--~d~li~apTGsGKTl~~~lp~l----~~~~~~lVl~P~~~L~~q~~-~~l~~ 263 (815)
..+|+|.+.+.++... +.+.+..++-+|||.+.+..+. ..++.+|++.||..++++.. .+|..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 6789999999998875 4788899999999996544332 23788999999999999876 34443
No 309
>PRK04195 replication factor C large subunit; Provisional
Probab=91.67 E-value=1.1 Score=51.99 Aligned_cols=30 Identities=27% Similarity=0.183 Sum_probs=20.9
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~l 245 (815)
.+.+|+.||+|+|||......+-..+..++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~i 68 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVI 68 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 467999999999999866554444443333
No 310
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.62 E-value=0.39 Score=51.70 Aligned_cols=61 Identities=8% Similarity=0.126 Sum_probs=46.2
Q ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCChhHHHH-HHHHHH-HcCCcEEEEcccHHHHHHH
Q 036378 197 YGYDSFRDGQLEAIKMVLDKK-STMLVLPTGAGKSLC-YQIPAM-ILPGLTLVVCPLVALMIDQ 257 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~-d~li~apTGsGKTl~-~~lp~l-~~~~~~lVl~P~~~L~~q~ 257 (815)
..|..+++-|...+..+...+ ++|++|.||||||.. ..+.++ ....++|.+--|.+|--++
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ 216 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAH 216 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCC
Confidence 467789999999999888877 999999999999963 222222 2255899998888885544
No 311
>PRK11054 helD DNA helicase IV; Provisional
Probab=91.62 E-value=0.5 Score=56.82 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHH---HH----cCCcEEEEcccHHHHHHHHHhcCCCceeeeecc
Q 036378 200 DSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MI----LPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSS 272 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~---l~----~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~ 272 (815)
..+++.|++|+-. ...+++|.|..|||||.+..--+ +. .+..+|+++.++..+....+++...+.
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg------ 266 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG------ 266 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC------
Confidence 4699999999863 34578999999999997654332 11 245899999999999988888765431
Q ss_pred CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEecc
Q 036378 273 SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEA 324 (815)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEa 324 (815)
...|-|+|-..|...+..........+..+..|+.
T Consensus 267 -----------------~~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~ 301 (684)
T PRK11054 267 -----------------TEDITARTFHALALHIIQQGSKKVPVISKLENDSK 301 (684)
T ss_pred -----------------CCCcEEEeHHHHHHHHHHHhhhcCCCcCccccchH
Confidence 12567777777765443332222233444455554
No 312
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=91.61 E-value=0.37 Score=58.31 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHH--HH-c----CCcEEEEcccHHHHHHHHHhcCCCceeeeeccC
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA--MI-L----PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSS 273 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~--l~-~----~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~ 273 (815)
.+++-|++|+.. ...+++|.|..|||||.+..--+ +. . +..+|+|+.|+..+.+..+++.+.+...
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~----- 73 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG----- 73 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc-----
Confidence 378999998865 35689999999999996543222 22 1 3568999999999999988887643210
Q ss_pred CChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcC-cccEEEEecccc
Q 036378 274 QRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS-LISLVVVDEAHC 326 (815)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~-~i~~lViDEaH~ 326 (815)
+...+.|+|-.+|...+.......+. .-.+-++|+.+.
T Consensus 74 ---------------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 74 ---------------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred ---------------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 12357788888876655444221111 123456776653
No 313
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.55 E-value=0.77 Score=51.01 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=21.5
Q ss_pred HHHHcC---CCHHHHHHHHHHHHHcCcEEEE
Q 036378 650 VANSIG---ATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 650 ~a~~~g---~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
++..+| .+..++...|..|+..|+|...
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 444444 5668899999999999999887
No 314
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.51 E-value=0.77 Score=55.46 Aligned_cols=20 Identities=40% Similarity=0.466 Sum_probs=16.4
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
++++.||+|+|||......+
T Consensus 54 slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78999999999998665443
No 315
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.50 E-value=4.2 Score=39.78 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=19.4
Q ss_pred EEEEcCCChhHHHHHHHHHH---HcCCcEEEEc
Q 036378 219 TMLVLPTGAGKSLCYQIPAM---ILPGLTLVVC 248 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~l---~~~~~~lVl~ 248 (815)
+++.+++|+|||......+. ..+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 57889999999987554432 2344555444
No 316
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=91.50 E-value=0.77 Score=60.16 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCChhHHHHHHH--HHHH-----cCCcEEEEcccHHHHHHHH
Q 036378 201 SFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQI--PAMI-----LPGLTLVVCPLVALMIDQL 258 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g--~d~li~apTGsGKTl~~~l--p~l~-----~~~~~lVl~P~~~L~~q~~ 258 (815)
.+++.|++|+..++.+ +-+++.|..|+|||..... -++. .+..++.++||-.-+....
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 6899999999999985 4678999999999976432 2222 1346788999988877654
No 317
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.47 E-value=0.9 Score=53.87 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.0
Q ss_pred EEEEcCCChhHHHHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~l 238 (815)
+|+.||.|+|||.+..+.+-
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999987655543
No 318
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.47 E-value=1.4 Score=50.78 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=16.7
Q ss_pred CCCEEEEcCCChhHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp 236 (815)
.+.+|+.||+|+|||+.....
T Consensus 216 p~GILLyGPPGTGKT~LAKAl 236 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAV 236 (512)
T ss_pred CcceEEECCCCCcHHHHHHHH
Confidence 457999999999999865433
No 319
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.42 E-value=0.18 Score=61.93 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=83.9
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHc---------------------CCcEEEEcccHHHHHHHHHhcCCCc----eeeee
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMIL---------------------PGLTLVVCPLVALMIDQLRHLPPVI----HGGFL 270 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~---------------------~~~~lVl~P~~~L~~q~~~~l~~~~----~~~~i 270 (815)
|+++++.-..|.|||.+-+...+.. .|-+|||+|. ++..||..++.+-+ +....
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 6788999999999998866555422 4679999998 66678988887622 22211
Q ss_pred ---ccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh----hc-------------C--cccEEEEecccccc
Q 036378 271 ---SSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT----AT-------------S--LISLVVVDEAHCVS 328 (815)
Q Consensus 271 ---~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~----~~-------------~--~i~~lViDEaH~i~ 328 (815)
........ ..+ -++|||++|...|.+.+...... .+ . .+=-|++|||+.+-
T Consensus 453 ~Girk~~~~~~--~el-----~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve 525 (1394)
T KOG0298|consen 453 FGIRKTFWLSP--FEL-----LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE 525 (1394)
T ss_pred echhhhcccCc--hhh-----hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc
Confidence 11111111 111 16999999999997654332100 00 0 12247999999773
Q ss_pred ccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHH
Q 036378 329 EWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSA 373 (815)
Q Consensus 329 ~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~ 373 (815)
. ..++.. .+.. +.+.....++|+||... +.++.-.
T Consensus 526 s-----ssS~~a---~M~~-rL~~in~W~VTGTPiq~-Iddl~~L 560 (1394)
T KOG0298|consen 526 S-----SSSAAA---EMVR-RLHAINRWCVTGTPIQK-IDDLFPL 560 (1394)
T ss_pred c-----hHHHHH---HHHH-HhhhhceeeecCCchhh-hhhhHHH
Confidence 2 222222 2222 23445679999999887 5555443
No 320
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.42 E-value=3.1 Score=46.03 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=15.9
Q ss_pred CCCEEEEcCCChhHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~l 235 (815)
++.++++||||+|||....-
T Consensus 206 ~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 55778999999999965443
No 321
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.30 E-value=0.87 Score=57.88 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=72.9
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCCC---ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcc
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPPV---IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLI 316 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~~---~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i 316 (815)
.+++++|++|+++-+...++.|.+. .+...+++.+...++...+..+.+|+++|||+|. .....+. +.++
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd------IierGID-IP~v 880 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGID-IPTA 880 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc------hhhcccc-cccC
Confidence 3678999999999888888888763 4567889999999999999999999999999993 1222333 7789
Q ss_pred cEEEEeccccccccccCchHHHHHHHHHHHH
Q 036378 317 SLVVVDEAHCVSEWSHNFRPSYMRLRASLLR 347 (815)
Q Consensus 317 ~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~ 347 (815)
++||++.++.+. . +.|..+..+.-|
T Consensus 881 ~~VIi~~ad~fg-----l-aq~~Qr~GRvGR 905 (1147)
T PRK10689 881 NTIIIERADHFG-----L-AQLHQLRGRVGR 905 (1147)
T ss_pred CEEEEecCCCCC-----H-HHHHHHhhccCC
Confidence 999999998652 2 445555455443
No 322
>CHL00176 ftsH cell division protein; Validated
Probab=91.26 E-value=2.2 Score=50.97 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=17.8
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l 238 (815)
.+.+|+.||+|+|||+....-+-
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999986544433
No 323
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=91.26 E-value=6.5 Score=38.86 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 627 KMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 627 ~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.++.++++.. ......+|..+|++...|++.|..|...|++.|.
T Consensus 26 ~Vl~~L~~~g-------~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 26 EVLKALIKKG-------EVTDEEIAEQTGIKLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred HHHHHHHHcC-------CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEe
Confidence 4555555442 2467789999999999999999999999999987
No 324
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=91.18 E-value=0.45 Score=52.91 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=24.0
Q ss_pred HHHHHHcCCCEEEEcCCChhHHHHHHHHHH
Q 036378 209 AIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 209 ai~~il~g~d~li~apTGsGKTl~~~lp~l 238 (815)
.|+.-+.+++.||.+.||+|||.+.++.+=
T Consensus 12 ~l~~~~~NRHGLIaGATGTGKTvTLqvlAE 41 (502)
T PF05872_consen 12 YLPLKMANRHGLIAGATGTGKTVTLQVLAE 41 (502)
T ss_pred ecChhhccccceeeccCCCCceehHHHHHH
Confidence 344445689999999999999999887763
No 325
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.16 E-value=1.6 Score=51.08 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=16.5
Q ss_pred CEEEEcCCChhHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l 238 (815)
-+|+.||.|+|||.+..+-+-
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 358999999999987665543
No 326
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.10 E-value=2.4 Score=51.96 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl 247 (815)
.+.+|+.||+|+|||+..-.-+-..+...+.+
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 34689999999999986655544444333333
No 327
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.02 E-value=3.3 Score=43.68 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHH----cCC-CEEEEcCCChhHHHHHHHHH
Q 036378 203 RDGQLEAIKMVL----DKK-STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 203 ~~~Q~~ai~~il----~g~-d~li~apTGsGKTl~~~lp~ 237 (815)
++.+.+++..+. .+. .+++.||+|+|||......+
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 445555555543 233 57899999999998765443
No 328
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.82 E-value=2 Score=47.85 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.6
Q ss_pred EEEEcCCChhHHHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~ 237 (815)
+|+.||.|+|||.....-+
T Consensus 41 ~L~~Gp~G~GKTtla~~la 59 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLA 59 (363)
T ss_pred EEEecCCCCCHHHHHHHHH
Confidence 5899999999998765554
No 329
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.70 E-value=0.5 Score=51.31 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHc-CCCEEEEcCCChhHHHHH-H-HHHHH---cCCcEEEEcccHHHH
Q 036378 202 FRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCY-Q-IPAMI---LPGLTLVVCPLVALM 254 (815)
Q Consensus 202 ~~~~Q~~ai~~il~-g~d~li~apTGsGKTl~~-~-lp~l~---~~~~~lVl~P~~~L~ 254 (815)
+++.|.+.+..+.. ++++|++|+||||||... . +-.+. ...+++++-.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccc
Confidence 66777777766554 569999999999999643 1 11221 234667776666764
No 330
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.68 E-value=1.7 Score=50.96 Aligned_cols=172 Identities=16% Similarity=0.157 Sum_probs=98.5
Q ss_pred HHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHH--HHHHH---cCCcEEEEcccHHH
Q 036378 179 AVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQ--IPAMI---LPGLTLVVCPLVAL 253 (815)
Q Consensus 179 ~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~--lp~l~---~~~~~lVl~P~~~L 253 (815)
.+.-...-+.+.+.|+.+|+...+..- +-.....+-+++..|-=.|||.+.. +..+. .+-.+++++|.+..
T Consensus 221 siklp~~a~r~~~~lk~~Fdi~~~s~~----~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~t 296 (738)
T PHA03368 221 SVLLGDHAERVERFLRTVFNTPLFSDA----AVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKA 296 (738)
T ss_pred hhccHHHHHHHHHHHHHHcCCccccHH----HHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHH
Confidence 334444455677899999998877653 3334457788899999999997433 33222 37789999999999
Q ss_pred HHHHHHhcCCCceee----eeccCCChHHHHHHHHHHhcCC-ceEEEeChhhhhchhhhhhhhhcCcccEEEEecccccc
Q 036378 254 MIDQLRHLPPVIHGG----FLSSSQRPEEVAETIRLIQVGA-IKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVS 328 (815)
Q Consensus 254 ~~q~~~~l~~~~~~~----~i~~~~~~~~~~~~~~~l~~g~-~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~ 328 (815)
++..++++...+... .+... . ++ ...-...+|. ..|.+.|- .-.+... -..++++|||||+.+.
T Consensus 297 s~~vF~eI~~~le~~f~~~~v~~v-k-Ge--~I~i~f~nG~kstI~FaSa------rntNsiR-GqtfDLLIVDEAqFIk 365 (738)
T PHA03368 297 TEPVFEEIGARLRQWFGASRVDHV-K-GE--TISFSFPDGSRSTIVFASS------HNTNGIR-GQDFNLLFVDEANFIR 365 (738)
T ss_pred HHHHHHHHHHHHhhhcchhheeee-c-Cc--EEEEEecCCCccEEEEEec------cCCCCcc-CCcccEEEEechhhCC
Confidence 999988887743311 11000 0 00 0000011121 13333321 0011111 2378999999999886
Q ss_pred ccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHh
Q 036378 329 EWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374 (815)
Q Consensus 329 ~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l 374 (815)
+ ..+..++. .+.. .++++|++|.|-+...-......+
T Consensus 366 ~------~al~~ilp-~l~~--~n~k~I~ISS~Ns~~~sTSFL~nL 402 (738)
T PHA03368 366 P------DAVQTIMG-FLNQ--TNCKIIFVSSTNTGKASTSFLYNL 402 (738)
T ss_pred H------HHHHHHHH-HHhc--cCccEEEEecCCCCccchHHHHhh
Confidence 4 23444432 2222 267899999886665444343333
No 331
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=90.63 E-value=4.5 Score=45.51 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=35.3
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~ 239 (815)
..+|++++-.+...+.+.+...-.-...-+-..+|.. .++.+++.||+|+|||+..-..+-.
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~--------------~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID--------------PPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC--------------CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3577777777777766666321110111111122322 2578999999999999865444433
No 332
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=90.55 E-value=1 Score=52.87 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=40.8
Q ss_pred HHHHHHHcCCCEEEEcCCChhHHHHHHHHH---HH-cCCcEEEEcccHHHHHHHHHhcCCCc
Q 036378 208 EAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MI-LPGLTLVVCPLVALMIDQLRHLPPVI 265 (815)
Q Consensus 208 ~ai~~il~g~d~li~apTGsGKTl~~~lp~---l~-~~~~~lVl~P~~~L~~q~~~~l~~~~ 265 (815)
..+-.....+-.++.+|-|-|||.+..+.+ +. .+..++|.+|...-+.+.++.+...+
T Consensus 179 d~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 179 DRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred HHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHH
Confidence 333334456788899999999997644322 22 46789999998888888777766643
No 333
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.52 E-value=2 Score=49.91 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.3
Q ss_pred EEEEcCCChhHHHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~ 237 (815)
+|+.||.|+|||.+..+.+
T Consensus 39 ~Lf~GppGtGKTTlA~~lA 57 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIA 57 (504)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4999999999998765443
No 334
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.46 E-value=2.4 Score=43.63 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=52.0
Q ss_pred cCCCEEEEcCCChhHHHH-HHHH--HHHc-CCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCC
Q 036378 215 DKKSTMLVLPTGAGKSLC-YQIP--AMIL-PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGA 290 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~-~~lp--~l~~-~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~ 290 (815)
.|..+++.|++|+|||+- +++. .+.. +..+++++- .+-..+..+.+..+. . + ..+....|.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g--------~---d---~~~~~~~g~ 82 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFG--------W---D---LEEYEDSGK 82 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTT--------S-------HHHHHHTTS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcC--------C---c---HHHHhhcCC
Confidence 366889999999999954 3333 3455 777887773 344455555555421 0 0 111233444
Q ss_pred ceEEEeChhhh----------hchhhhhhhhhcCcccEEEEeccccc
Q 036378 291 IKVLFVSPERF----------LNADFLSIFTATSLISLVVVDEAHCV 327 (815)
Q Consensus 291 ~~Ili~TPe~L----------~~~~~~~~~~~~~~i~~lViDEaH~i 327 (815)
..++=+.++.. ...+ .+.+... +.+.+|||-..-+
T Consensus 83 l~~~d~~~~~~~~~~~~~~~l~~~i-~~~i~~~-~~~~vVIDsls~l 127 (226)
T PF06745_consen 83 LKIIDAFPERIGWSPNDLEELLSKI-REAIEEL-KPDRVVIDSLSAL 127 (226)
T ss_dssp EEEEESSGGGST-TSCCHHHHHHHH-HHHHHHH-TSSEEEEETHHHH
T ss_pred EEEEecccccccccccCHHHHHHHH-HHHHHhc-CCCEEEEECHHHH
Confidence 55554555532 1111 1122212 4489999998888
No 335
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=90.43 E-value=1.5 Score=47.60 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHH-HcCCCEEEEcCCChhHHHHHHHHHH-----HcCCcEEEEcccHHHH
Q 036378 202 FRDGQLEAIKMV-LDKKSTMLVLPTGAGKSLCYQIPAM-----ILPGLTLVVCPLVALM 254 (815)
Q Consensus 202 ~~~~Q~~ai~~i-l~g~d~li~apTGsGKTl~~~lp~l-----~~~~~~lVl~P~~~L~ 254 (815)
+++.|.+.+..+ ..+++++++|+||||||......+- ....++++|-.+.+|.
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~ 191 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQ 191 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccc
Confidence 567777777764 4567999999999999954322211 1245677777777774
No 336
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.35 E-value=1.9 Score=47.94 Aligned_cols=35 Identities=23% Similarity=0.066 Sum_probs=23.8
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEccc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPL 250 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~ 250 (815)
|.-+++.+++|+|||...+..+. ..+..+++++-.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 56788999999999964433322 234677777654
No 337
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=90.25 E-value=2.9 Score=46.54 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=18.4
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMIL 240 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~ 240 (815)
.+.+++.||+|+|||+.....+-..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4569999999999998665444333
No 338
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.24 E-value=2.2 Score=52.17 Aligned_cols=60 Identities=23% Similarity=0.192 Sum_probs=33.4
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHH
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~ 237 (815)
..+|++++-..+.++.+.+...-.-...-+...+|. ..++.+++.||+|+|||......+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi--------------~~~~giLL~GppGtGKT~laraia 233 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI--------------EPPKGVLLYGPPGTGKTLLAKAVA 233 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC--------------CCCceEEEECCCCCChHHHHHHHH
Confidence 357777776666666665532100000111111232 135689999999999997654433
No 339
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.22 E-value=3.7 Score=46.37 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=20.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 036378 647 IPTVANSIGATTIDVSNQLLNLKM 670 (815)
Q Consensus 647 ~~~~a~~~g~~~~~v~~~l~~l~~ 670 (815)
...+|.+.|.+..+|.+.|++...
T Consensus 402 ~~RIa~GSG~~~~~V~~ll~~~~~ 425 (429)
T TIGR01425 402 IQRVARGSGRSIRDVQELLEQYKK 425 (429)
T ss_pred HHHHHccCCCCHHHHHHHHHHHHH
Confidence 567999999999999999988764
No 340
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=90.19 E-value=2.4 Score=48.04 Aligned_cols=121 Identities=21% Similarity=0.122 Sum_probs=92.2
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
.+.++||.+=|+-++.+..+-|.. +++..++++....-++...++.++.|.+++|||- .+.++.+. +..+++
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI------NLLREGLD-iPEVsL 517 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI------NLLREGLD-LPEVSL 517 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEee------hhhhccCC-CcceeE
Confidence 367899999999999999999988 8999999999999999999999999999999996 23455555 789999
Q ss_pred EEEeccccccccccCchHHHHHHHHHHHHHhcc-cceeEeeecccChhHHHHHHH
Q 036378 319 VVVDEAHCVSEWSHNFRPSYMRLRASLLRARLN-VECILAMTATATTTTLRDVMS 372 (815)
Q Consensus 319 lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~-~~~vl~lSAT~~~~~~~~i~~ 372 (815)
|.|=.||.= +|--+-..++..+-+...+ ...+|+..-..|......+.+
T Consensus 518 VAIlDADKe-----GFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~E 567 (663)
T COG0556 518 VAILDADKE-----GFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDE 567 (663)
T ss_pred EEEeecCcc-----ccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHHH
Confidence 999999975 4444444443444443333 336777776777666554443
No 341
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=4.4 Score=45.02 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=14.7
Q ss_pred CEEEEcCCChhHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 218 d~li~apTGsGKTl~~~ 234 (815)
++++.|+||+|||.+..
T Consensus 44 n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 44 NIIIYGPTGTGKTATVK 60 (366)
T ss_pred cEEEECCCCCCHhHHHH
Confidence 69999999999998643
No 342
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.06 E-value=2 Score=51.49 Aligned_cols=77 Identities=21% Similarity=0.135 Sum_probs=65.8
Q ss_pred cccceEEEecchHHHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeC
Q 036378 421 KHYYILQISGKHFETDLISRYLCDNS--ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYS 498 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~g--~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d 498 (815)
.+..+++.+.....+..+.+.|+... ..+..+|+++++.+|.+...+..+|+.+|+|.|-.+-. .-+++...||..+
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEEEEEc
Confidence 36678999999999999999998653 57999999999999999999999999999999987543 5777888887654
No 343
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=89.91 E-value=1.3 Score=43.04 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=25.0
Q ss_pred cccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHH
Q 036378 315 LISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370 (815)
Q Consensus 315 ~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i 370 (815)
..+++||||||.|.. .....+ .+.+.+ ++...+++|+++-...+..-|
T Consensus 102 ~~KviiI~~ad~l~~------~a~NaL-LK~LEe-pp~~~~fiL~t~~~~~il~TI 149 (162)
T PF13177_consen 102 KYKVIIIDEADKLTE------EAQNAL-LKTLEE-PPENTYFILITNNPSKILPTI 149 (162)
T ss_dssp SSEEEEEETGGGS-H------HHHHHH-HHHHHS-TTTTEEEEEEES-GGGS-HHH
T ss_pred CceEEEeehHhhhhH------HHHHHH-HHHhcC-CCCCEEEEEEECChHHChHHH
Confidence 678999999999864 122333 233433 333345555555444444333
No 344
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.76 E-value=2.8 Score=48.11 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=32.6
Q ss_pred cCcccEEEEeccccccccccCchHH-HHHHHHHHHHHh-cccceeEeeecccChhHHHHHHHHhc
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPS-YMRLRASLLRAR-LNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~-~~~i~~~~~~~~-~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
+.+.++++||.+=+. .+.. .... ...+... .+...++.++||.......++.+.+.
T Consensus 332 L~d~d~VLIDTaGr~------~~d~~~~e~-~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~ 389 (484)
T PRK06995 332 LRNKHIVLIDTIGMS------QRDRMVSEQ-IAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR 389 (484)
T ss_pred ccCCCeEEeCCCCcC------hhhHHHHHH-HHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc
Confidence 556788999986432 2221 1222 2222222 13346889999998888777766554
No 345
>PLN03025 replication factor C subunit; Provisional
Probab=89.74 E-value=2.5 Score=46.07 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=16.2
Q ss_pred CCEEEEcCCChhHHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~ 237 (815)
.++++.||.|+|||......+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999996554433
No 346
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=89.73 E-value=3.6 Score=45.01 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=16.1
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
.+++.||+|+|||......+
T Consensus 38 ~lll~Gp~GtGKT~la~~~~ 57 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALA 57 (337)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78999999999997654433
No 347
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=89.72 E-value=0.85 Score=49.08 Aligned_cols=47 Identities=23% Similarity=0.324 Sum_probs=28.5
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHH-cCC--CEEEEcCCChhHHHHHHHHHH
Q 036378 191 RLLRLVYGYDSFRDGQLEAIKMVL-DKK--STMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 191 ~~l~~~~g~~~~~~~Q~~ai~~il-~g~--d~li~apTGsGKTl~~~lp~l 238 (815)
+.|..++|-..+- .|.-.+..++ +++ ++|+.+|.|+|||...-+.+.
T Consensus 135 ktL~dyvGQ~hlv-~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 135 KTLDDYVGQSHLV-GQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred chHHHhcchhhhc-CcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHh
Confidence 4666666633322 2333344433 344 789999999999976554443
No 348
>PRK06620 hypothetical protein; Validated
Probab=89.70 E-value=1.2 Score=45.66 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=15.1
Q ss_pred CCEEEEcCCChhHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~ 234 (815)
+.+++.||+|+|||...+
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999998554
No 349
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.53 E-value=0.23 Score=52.41 Aligned_cols=24 Identities=46% Similarity=0.602 Sum_probs=19.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~ 239 (815)
..++|+++|||||||+.++..+-.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~ 120 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKI 120 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999977765543
No 350
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.46 E-value=5 Score=41.58 Aligned_cols=43 Identities=12% Similarity=-0.055 Sum_probs=28.0
Q ss_pred cCCCEEEEcCCChhHHHHHHHHH---HHc-CCcEEEEcc---cHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPA---MIL-PGLTLVVCP---LVALMIDQ 257 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~---l~~-~~~~lVl~P---~~~L~~q~ 257 (815)
.|.-+++.|++|+|||...+--+ ... +..+++++. ..+++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHH
Confidence 46788999999999996433222 233 677888873 44455444
No 351
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.37 E-value=2 Score=51.53 Aligned_cols=121 Identities=17% Similarity=0.089 Sum_probs=84.6
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
+.++||.++++..+....+.|.. ++....+++.+...++...+..++.|.++|+|+|- . ....+. +..++++
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-~-----L~rGfD-iP~v~lV 514 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-L-----LREGLD-LPEVSLV 514 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-h-----hcCCee-eCCCcEE
Confidence 67899999999999999999987 67778888889999999999999999999999982 2 222333 6789999
Q ss_pred EEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHH
Q 036378 320 VVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMS 372 (815)
Q Consensus 320 ViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~ 372 (815)
|+-+++...-. ....+|..+..+.-|.. ...++.+--..+......+.+
T Consensus 515 vi~DadifG~p--~~~~~~iqriGRagR~~--~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 515 AILDADKEGFL--RSERSLIQTIGRAARNV--NGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred EEeCcccccCC--CCHHHHHHHhcCCCCCC--CCEEEEEEcCCCHHHHHHHHH
Confidence 99888765311 22345555545544432 224455544555554444433
No 352
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.37 E-value=2.5 Score=50.25 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=16.1
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
.+|+.||.|+|||.+..+.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45899999999998765554
No 353
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=89.33 E-value=0.55 Score=57.36 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHH--HHHHH-c----CCcEEEEcccHHHHHHHHHhcCCCceeeeecc
Q 036378 200 DSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQ--IPAMI-L----PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSS 272 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~--lp~l~-~----~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~ 272 (815)
..++|-|++|+.. ....++|.|..|||||.+.. +.-+. . +..+|+++-|+..+....+++.+.+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~----- 75 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP----- 75 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc-----
Confidence 4589999999975 35689999999999996543 22222 1 356999999999999888888664221
Q ss_pred CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcC-cccEEEEeccc
Q 036378 273 SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS-LISLVVVDEAH 325 (815)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~-~i~~lViDEaH 325 (815)
....+.|+|-..|...+.......+. .-.+-|+|+.+
T Consensus 76 ----------------~~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~ 113 (726)
T TIGR01073 76 ----------------VAEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTD 113 (726)
T ss_pred ----------------ccCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHH
Confidence 01246677777776554443222110 22344667665
No 354
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.32 E-value=6.6 Score=45.93 Aligned_cols=109 Identities=19% Similarity=0.150 Sum_probs=71.8
Q ss_pred HHHhhccccceEEEecchHHHHHHHHHHhhCCC-------cEEEecCCCCHHHHHHHHHHHhc----CCceEEEEcc--c
Q 036378 415 SFHRSSKHYYILQISGKHFETDLISRYLCDNSI-------SVKSYHSGIPAKDRSRIQELFCS----NKIRVVVATV--A 481 (815)
Q Consensus 415 ~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~-------~v~~~h~~~~~~~R~~i~~~F~~----g~~~VLVaT~--~ 481 (815)
.+....+ +.+++|+.+-.-...+.+.....|+ +.+++-..-+ -..+++.|.. |.--||+|.. -
T Consensus 623 nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGK 698 (821)
T KOG1133|consen 623 NLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGK 698 (821)
T ss_pred HHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 4444444 6789999999888888888887664 2333333333 3455666643 5556777665 3
Q ss_pred cccccccCC--ccEEEEeCCCCC------------------------HHH--------HHHHHcccCCCCCCceEEEEec
Q 036378 482 FGMGLDKRD--VGAVIHYSLPES------------------------LEE--------YVQEIGRAGRDGRLSYCHLFLD 527 (815)
Q Consensus 482 ~~~GID~p~--v~~VI~~d~P~s------------------------~~~--------y~Qr~GRaGR~g~~g~~i~l~~ 527 (815)
++.|||+.| .|.||..++|.. -+- --|-+|||=|.-+.=.+++|++
T Consensus 699 lSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 699 LSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred cccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 688999998 788999998742 111 2688999999855444444544
No 355
>PHA00729 NTP-binding motif containing protein
Probab=89.31 E-value=2.8 Score=42.97 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=14.0
Q ss_pred CEEEEcCCChhHHHHH
Q 036378 218 STMLVLPTGAGKSLCY 233 (815)
Q Consensus 218 d~li~apTGsGKTl~~ 233 (815)
++++.|++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7899999999999643
No 356
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.12 E-value=2.3 Score=50.31 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=63.5
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
+.++||.++++..+...++.|.+ ++....+++.+...++...++.+++|.++|||+|.- ....+. +..+++|
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv------~arGID-ip~V~~V 329 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDV------AARGLH-IDGVKYV 329 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehh------hhcCCC-ccCCCEE
Confidence 67899999999999999999987 677889999999999999999999999999999942 122223 6678888
Q ss_pred EEecc
Q 036378 320 VVDEA 324 (815)
Q Consensus 320 ViDEa 324 (815)
|.-+.
T Consensus 330 Inyd~ 334 (572)
T PRK04537 330 YNYDL 334 (572)
T ss_pred EEcCC
Confidence 76543
No 357
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=88.99 E-value=0.93 Score=49.01 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=28.0
Q ss_pred eCHHHHHHHcCCCHHHHHHHHH-HHHHcCcE
Q 036378 645 FDIPTVANSIGATTIDVSNQLL-NLKMRGEI 674 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~-~l~~~g~i 674 (815)
+.+.++|..+|.+...+...+. +|...|+|
T Consensus 256 ~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 256 VGLKTLAAALGEDADTIEDVYEPYLLQIGFL 286 (305)
T ss_pred ccHHHHHHHhCCCcchHHHhhhHHHHHcCCc
Confidence 4689999999999999999999 79999998
No 358
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=88.93 E-value=1.3 Score=51.18 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEcCCChhHHHHHHHHHH---Hc----CCcEEEEcccHHHHHHHHHhcCCCce
Q 036378 204 DGQLEAIKMVLD-----K----KSTMLVLPTGAGKSLCYQIPAM---IL----PGLTLVVCPLVALMIDQLRHLPPVIH 266 (815)
Q Consensus 204 ~~Q~~ai~~il~-----g----~d~li~apTGsGKTl~~~lp~l---~~----~~~~lVl~P~~~L~~q~~~~l~~~~~ 266 (815)
|+|+-++..++. | +.+++..|=|-|||......++ .. +..++++++++.-+...++.+...+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 455555555541 2 3578888999999965433322 11 46799999999999999988877543
No 359
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=88.90 E-value=6.5 Score=45.08 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=74.5
Q ss_pred CChhHHHHHHHHHHH-----cCCcEEEEcccHHHHHHHHHhcC--CCceeeeeccCCChHHHHHHHHHHhcCCceEEEeC
Q 036378 225 TGAGKSLCYQIPAMI-----LPGLTLVVCPLVALMIDQLRHLP--PVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVS 297 (815)
Q Consensus 225 TGsGKTl~~~lp~l~-----~~~~~lVl~P~~~L~~q~~~~l~--~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~T 297 (815)
+++||+..-++++.. ..+.+||.+-+.+=+.|.+..|. ..+....+++..+..+....+++++.|.+.++|||
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT 445 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT 445 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh
Confidence 467777655555442 36789999999999999999995 36788899999999999999999999999999999
Q ss_pred hhhhhchhhhhhhhhcCcccEEEEeccc
Q 036378 298 PERFLNADFLSIFTATSLISLVVVDEAH 325 (815)
Q Consensus 298 Pe~L~~~~~~~~~~~~~~i~~lViDEaH 325 (815)
- +....+. +.++++||.+..-
T Consensus 446 d------ll~RGiD-f~gvn~VInyD~p 466 (593)
T KOG0344|consen 446 D------LLARGID-FKGVNLVINYDFP 466 (593)
T ss_pred h------hhhcccc-ccCcceEEecCCC
Confidence 3 2222234 8899999996544
No 360
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=88.80 E-value=1.5 Score=43.35 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=19.6
Q ss_pred CEEEEcCCChhHHHHHHHHHHHcCCcEEE
Q 036378 218 STMLVLPTGAGKSLCYQIPAMILPGLTLV 246 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~~~~~~lV 246 (815)
-.+++||+|+|||-..-.-.+...+..-.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~ 52 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAK 52 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCccccc
Confidence 56899999999998654444444444433
No 361
>PTZ00110 helicase; Provisional
Probab=88.75 E-value=3.7 Score=48.31 Aligned_cols=120 Identities=12% Similarity=0.002 Sum_probs=80.6
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
.+.++||.++++.-+......|.. ++....+++.+...++...++.++.|...|||+|.- ....+. +.++++
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv------~~rGID-i~~v~~ 448 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDV------ASRGLD-VKDVKY 448 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcch------hhcCCC-cccCCE
Confidence 467999999999999999999975 677888999999999999999999999999999942 122223 667888
Q ss_pred EEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHh
Q 036378 319 VVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374 (815)
Q Consensus 319 lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l 374 (815)
||.-..- .-..+|...+.+.-|......-+.++|.. ......++.+.+
T Consensus 449 VI~~d~P-------~s~~~yvqRiGRtGR~G~~G~ai~~~~~~-~~~~~~~l~~~l 496 (545)
T PTZ00110 449 VINFDFP-------NQIEDYVHRIGRTGRAGAKGASYTFLTPD-KYRLARDLVKVL 496 (545)
T ss_pred EEEeCCC-------CCHHHHHHHhcccccCCCCceEEEEECcc-hHHHHHHHHHHH
Confidence 8763322 12234444434444443344456666543 223333444443
No 362
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.73 E-value=3.9 Score=48.16 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=16.3
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
-+|+.||.|+|||.+.-+.+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999998766554
No 363
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=88.53 E-value=3.2 Score=45.38 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHcCC----CEEEEcCCChhHHHHHHHH
Q 036378 202 FRDGQLEAIKMVLDKK----STMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 202 ~~~~Q~~ai~~il~g~----d~li~apTGsGKTl~~~lp 236 (815)
..|+|...+..++... -.|+.||.|.|||......
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 4688999998887643 4789999999999654433
No 364
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=88.45 E-value=7.1 Score=45.43 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=17.2
Q ss_pred CCCEEEEcCCChhHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~ 237 (815)
.+.+|+.||+|+|||+....-+
T Consensus 88 ~~giLL~GppGtGKT~la~alA 109 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVA 109 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 3579999999999998654443
No 365
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=88.40 E-value=0.24 Score=55.60 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=34.5
Q ss_pred CEEEEcCCChhHHHHHHHHHHH-cCCcEEEEcccHHHHHHHHHh
Q 036378 218 STMLVLPTGAGKSLCYQIPAMI-LPGLTLVVCPLVALMIDQLRH 260 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~-~~~~~lVl~P~~~L~~q~~~~ 260 (815)
+++++||||||||.++.+|.+. ..+.+||+-|--++.......
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~ 44 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEH 44 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHH
Confidence 4789999999999999999765 477888888888887654433
No 366
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=88.29 E-value=0.84 Score=47.73 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=48.9
Q ss_pred hCCCHHHHHHHHHHHHhcCcccEEeccccccceEEEecCCchhhhhhhHHHHHHHHhhCCcCCceeeeCHHHHHHHcCCC
Q 036378 578 FDIKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADKDKMVATILKKSETKQGQYVFDIPTVANSIGAT 657 (815)
Q Consensus 578 ~~~~~~~~~~~l~~le~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~ 657 (815)
-.++.+....+|+.|...+.|+=+ .....+..+.+.+ .+| .+-+.++|..+|.+
T Consensus 237 ~~I~~~ia~~aL~~L~Vd~~GLd~----------------------~D~k~L~~li~~f--~Gg--PVGl~tia~~lge~ 290 (332)
T COG2255 237 GDIDRDIADKALKMLDVDELGLDE----------------------IDRKYLRALIEQF--GGG--PVGLDTIAAALGED 290 (332)
T ss_pred CcccHHHHHHHHHHhCcccccccH----------------------HHHHHHHHHHHHh--CCC--CccHHHHHHHhcCc
Confidence 345666777788888755444311 1235667777765 111 35688999999999
Q ss_pred HHHHHHHHH-HHHHcCcEE
Q 036378 658 TIDVSNQLL-NLKMRGEIT 675 (815)
Q Consensus 658 ~~~v~~~l~-~l~~~g~i~ 675 (815)
+..|..+++ ||.+.|+|.
T Consensus 291 ~~TiEdv~EPyLiq~gfi~ 309 (332)
T COG2255 291 RDTIEDVIEPYLIQQGFIQ 309 (332)
T ss_pred hhHHHHHHhHHHHHhchhh
Confidence 999998887 788888764
No 367
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.26 E-value=1.6 Score=47.82 Aligned_cols=45 Identities=24% Similarity=0.312 Sum_probs=34.6
Q ss_pred HHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHH-HHHHcCcEE
Q 036378 627 KMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL-NLKMRGEIT 675 (815)
Q Consensus 627 ~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~-~l~~~g~i~ 675 (815)
..+.+++... .+. .+.+.++|..+|.+...+..+++ +|...|+|.
T Consensus 263 ~~l~~~~~~~---~~~-~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 263 KYLRTIIEKF---GGG-PVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHHHHHHc---CCC-ceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcc
Confidence 3455555553 122 36788999999999999999999 999999883
No 368
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.26 E-value=3.7 Score=46.22 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=16.1
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
.+|+.||.|+|||.++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37899999999998765554
No 369
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.25 E-value=1.7 Score=48.47 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=26.0
Q ss_pred cccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChh
Q 036378 315 LISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365 (815)
Q Consensus 315 ~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~ 365 (815)
.+++++||.++.+..+. .....+..++..+. ..+.|+++.|..++.+
T Consensus 175 ~~dlllIDDiq~l~gk~-~~qeefFh~FN~l~---~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKE-RTQEEFFHTFNALL---ENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCCh-hHHHHHHHHHHHHH---hcCCEEEEEcCCCchh
Confidence 79999999999987421 22334444433322 2233566555444443
No 370
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=88.07 E-value=0.33 Score=56.01 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=36.3
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHc-CCcEEEEcccHHHHHHHHHhcC
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMIL-PGLTLVVCPLVALMIDQLRHLP 262 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~-~~~~lVl~P~~~L~~q~~~~l~ 262 (815)
.+++++||||||||..+.+|.+.. .+-+||+-|--+|.......++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~ 91 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRK 91 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHH
Confidence 479999999999999999997654 5678888888887766555444
No 371
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.04 E-value=6.6 Score=44.10 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=33.6
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHHHh---cccceeEeeecccChhHHHHHHHHhc
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR---LNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~---~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
.+.++|+||=+-+.. .-......+ ..+++.. .+...+|.++||........+...+.
T Consensus 298 ~~~D~VLIDTaGr~~----rd~~~l~eL-~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 298 DGSELILIDTAGYSH----RNLEQLERM-QSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred CCCCEEEEeCCCCCc----cCHHHHHHH-HHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 367889998665431 011222222 3334322 23347899999999988877777663
No 372
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.01 E-value=5.4 Score=47.25 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=15.9
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
-+|+.||.|+|||.+..+.+
T Consensus 40 ayLf~Gp~G~GKtt~A~~la 59 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILA 59 (576)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35899999999998765544
No 373
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=87.95 E-value=3.5 Score=44.77 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHHc----CC---CEEEEcCCChhHHHHHH
Q 036378 199 YDSFRDGQLEAIKMVLD----KK---STMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 199 ~~~~~~~Q~~ai~~il~----g~---d~li~apTGsGKTl~~~ 234 (815)
+..+.|+|..++..+.. |+ -.|+.||.|.||+....
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 45688999999888763 44 47899999999996543
No 374
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.94 E-value=6.2 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=17.2
Q ss_pred CCEEEEcCCChhHHHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l 238 (815)
..+|+.||.|+|||......+-
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk 60 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAK 60 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHH
Confidence 3579999999999987655543
No 375
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.94 E-value=1.7 Score=50.63 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.2
Q ss_pred EEEEcCCChhHHHHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~l 238 (815)
+|+.||.|+|||....+.+-
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999987665543
No 376
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=87.83 E-value=0.89 Score=58.72 Aligned_cols=119 Identities=12% Similarity=0.104 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH---Hc---CCcEEEEcccHHHHHHHHHhcCCCceeeeeccCC
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM---IL---PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQ 274 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l---~~---~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~ 274 (815)
++|+.|.+||. ..+++++|.|.-|||||.+..--++ .. ...+|||+=|++.+.....++.+.+....- ...
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~-~~p 77 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQ-QEP 77 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh-cCc
Confidence 46899999998 3688999999999999987543332 22 245999999999999988888774321110 011
Q ss_pred ChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcC-cccEEEEecccc
Q 036378 275 RPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS-LISLVVVDEAHC 326 (815)
Q Consensus 275 ~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~-~i~~lViDEaH~ 326 (815)
.......++.. -...-|+|-..+...+.......+. +-++=|.||...
T Consensus 78 ~~~~L~~q~~~----~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 78 NSKHLRRQLAL----LNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred hhHHHHHHHhh----ccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 11112222222 2356788888887655554433111 124556787765
No 377
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=87.77 E-value=0.68 Score=47.72 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=22.2
Q ss_pred EEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQL 258 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~ 258 (815)
+++.|+.|||||....-. +.....+.+..|+..+..++.
T Consensus 1 ~vv~G~pGsGKSt~i~~~-~~~~~~~~~~~~~~~~~~~~~ 39 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKL-LKDRLVVTVISPTIELYTEWL 39 (234)
T ss_pred CEEEcCCCCCHHHHHHHH-HHhccccccccccceeccccc
Confidence 478999999999843322 222222333445555554443
No 378
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.50 E-value=2.8 Score=51.18 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.0
Q ss_pred CCCEEEEcCCChhHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~ 234 (815)
..++|++||+|+|||....
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3489999999999998653
No 379
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=87.32 E-value=1 Score=47.65 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=28.1
Q ss_pred HHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 036378 209 AIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247 (815)
Q Consensus 209 ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl 247 (815)
++..+..|+++++.||+|+|||.+...-+-..+...+.+
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 444566789999999999999987655554445555555
No 380
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.26 E-value=0.9 Score=50.25 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCChhHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLC 232 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~ 232 (815)
.|+-.++++|.|+|||..
T Consensus 168 kGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred cCceEEEeCCCCCChhHH
Confidence 689999999999999964
No 381
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=87.25 E-value=5.7 Score=41.03 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=28.4
Q ss_pred CCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEcccHHHHHHHHHhcCC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
|.-+++.+++|+|||...+..+ +..+..+++++=... ..+..+.+.+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~ 74 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMES 74 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHH
Confidence 5678899999999995433322 344666777764332 3444444433
No 382
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=87.23 E-value=2.9 Score=45.40 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=11.5
Q ss_pred cccEEEEeccccc
Q 036378 315 LISLVVVDEAHCV 327 (815)
Q Consensus 315 ~i~~lViDEaH~i 327 (815)
..++|||||+|.+
T Consensus 100 ~~~vliiDe~d~l 112 (316)
T PHA02544 100 GGKVIIIDEFDRL 112 (316)
T ss_pred CCeEEEEECcccc
Confidence 5689999999988
No 383
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.15 E-value=4.2 Score=48.29 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=16.4
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
.+|+.||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999998766554
No 384
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.09 E-value=0.85 Score=45.47 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHc-CCCEEEEcCCChhHHHHH
Q 036378 199 YDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 199 ~~~~~~~Q~~ai~~il~-g~d~li~apTGsGKTl~~ 233 (815)
...+++.|.+.+...+. |..+++++|||||||...
T Consensus 7 ~g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 7 QGTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34577788888877654 678999999999999754
No 385
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.06 E-value=7.2 Score=46.12 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=16.9
Q ss_pred CEEEEcCCChhHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l 238 (815)
.+|+.+|.|+|||.+..+.+-
T Consensus 40 a~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578899999999987765543
No 386
>PRK10867 signal recognition particle protein; Provisional
Probab=86.85 E-value=7.7 Score=44.00 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 036378 647 IPTVANSIGATTIDVSNQLLNLKM 670 (815)
Q Consensus 647 ~~~~a~~~g~~~~~v~~~l~~l~~ 670 (815)
...+|.+.|.+..+|.+.|++...
T Consensus 394 ~~RIa~GsG~~~~~v~~ll~~~~~ 417 (433)
T PRK10867 394 KRRIAKGSGTTVQEVNRLLKQFEQ 417 (433)
T ss_pred HHHHHccCCCCHHHHHHHHHHHHH
Confidence 567999999999999999887654
No 387
>PRK11823 DNA repair protein RadA; Provisional
Probab=86.74 E-value=3.9 Score=46.73 Aligned_cols=43 Identities=21% Similarity=0.081 Sum_probs=26.9
Q ss_pred CCCEEEEcCCChhHHHHH-HHHHH--HcCCcEEEEcccHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCY-QIPAM--ILPGLTLVVCPLVALMIDQLR 259 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~-~lp~l--~~~~~~lVl~P~~~L~~q~~~ 259 (815)
|.-+++.+++|+|||... ++..- ..+..+++++-. +-..|...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ 125 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKL 125 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHH
Confidence 567889999999999643 33322 236678887743 33334433
No 388
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=86.71 E-value=3.7 Score=47.21 Aligned_cols=121 Identities=17% Similarity=0.087 Sum_probs=79.1
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
..++||.++++.-+...++.|.+ ++....+++.++..++...++.++.|.++|||+|-- ....+. +..+++|
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv------~~rGiD-ip~v~~V 317 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDI------AARGLD-IEELPHV 317 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccH------HhcCCC-cccCCEE
Confidence 45899999999999999999976 677888999999999999999999999999999941 122223 5677777
Q ss_pred EEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcC
Q 036378 320 VVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEI 376 (815)
Q Consensus 320 ViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~ 376 (815)
|.=+.= ....+|.....+.-|......-+.+++.. ......++.+.+..
T Consensus 318 I~~~~P-------~~~~~yvqR~GRaGR~g~~G~ai~l~~~~-d~~~~~~ie~~l~~ 366 (456)
T PRK10590 318 VNYELP-------NVPEDYVHRIGRTGRAAATGEALSLVCVD-EHKLLRDIEKLLKK 366 (456)
T ss_pred EEeCCC-------CCHHHhhhhccccccCCCCeeEEEEecHH-HHHHHHHHHHHhcC
Confidence 643221 12234554444444433333334444432 23344555555443
No 389
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.25 E-value=2.5 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=16.6
Q ss_pred CEEEEcCCChhHHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~ 239 (815)
.++++||||+|||......+-.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 4689999999999766554433
No 390
>PHA00350 putative assembly protein
Probab=86.24 E-value=3.8 Score=45.69 Aligned_cols=24 Identities=29% Similarity=0.126 Sum_probs=17.0
Q ss_pred EEEEcCCChhHHHHHH----HHHHHcCC
Q 036378 219 TMLVLPTGAGKSLCYQ----IPAMILPG 242 (815)
Q Consensus 219 ~li~apTGsGKTl~~~----lp~l~~~~ 242 (815)
.++.|..|||||+..+ +|++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 5788999999997654 44544453
No 391
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=86.23 E-value=5.8 Score=40.31 Aligned_cols=60 Identities=25% Similarity=0.390 Sum_probs=47.1
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE-----ecCceEEEEEeCC-----CchhhhhHHHHHHHH
Q 036378 646 DIPTVANSIGATTIDVSNQLLNLKMRGEITYE-----LKDPAYCYTIVEV-----PSDFCALSAHLTKWL 705 (815)
Q Consensus 646 ~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~-----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 705 (815)
...++|..+|+++..|++.|..|+.+|++.++ .+.|...|.+.+. +.....+...+.+.+
T Consensus 27 sa~elA~~Lgis~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f~~~y~~l~~~~l~~l 96 (218)
T COG2345 27 SADELAEELGISPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQFPKRYGELALALLDAL 96 (218)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhcchhhHHHHHHHHHHH
Confidence 57789999999999999999999999999988 4789999988765 334444444444443
No 392
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=86.18 E-value=5.1 Score=48.83 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=17.0
Q ss_pred CCCEEEEcCCChhHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp 236 (815)
..++|++||+|+|||......
T Consensus 207 ~~n~LLvGppGvGKT~lae~l 227 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGL 227 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHH
Confidence 458999999999999875433
No 393
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=86.03 E-value=2.8 Score=47.41 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHH
Q 036378 204 DGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 204 ~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~ 237 (815)
......+..+..++++++.||+|+|||.....-+
T Consensus 182 ~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 182 TTIETILKRLTIKKNIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 3455666777789999999999999997665443
No 394
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=85.86 E-value=1.7 Score=43.71 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=11.5
Q ss_pred EEEEcCCChhHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 219 ~li~apTGsGKTl~~~l 235 (815)
.+++|..|||||+....
T Consensus 3 ~~~~G~pGsGKS~~av~ 19 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVS 19 (193)
T ss_dssp EEEE--TTSSHHHHHHH
T ss_pred EEEEcCCCCcHhHHHHH
Confidence 47899999999975433
No 395
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=85.77 E-value=42 Score=35.97 Aligned_cols=86 Identities=20% Similarity=0.168 Sum_probs=46.3
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCC--ceeeeeccCCC----hHHHHHHHHHHhcCC
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV--IHGGFLSSSQR----PEEVAETIRLIQVGA 290 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~--~~~~~i~~~~~----~~~~~~~~~~l~~g~ 290 (815)
+-+++.|++|||||.+.... ...+...+=-+..+|..+.++.+... .....+..... ..+....+..++...
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l--~~~g~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g 84 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRAL--EDLGYYCVDNLPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRERG 84 (288)
T ss_pred eEEEEECCCCCcHHHHHHHH--HHcCCeEECCcCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHcC
Confidence 34788999999999865443 34455555555567776665555442 22222222221 234445555555533
Q ss_pred c--eE--EEeChhhhhch
Q 036378 291 I--KV--LFVSPERFLNA 304 (815)
Q Consensus 291 ~--~I--li~TPe~L~~~ 304 (815)
. .+ |-++++.|..-
T Consensus 85 ~~~~iI~L~a~~e~L~~R 102 (288)
T PRK05416 85 IDVRVLFLDASDEVLIRR 102 (288)
T ss_pred CcEEEEEEECCHHHHHHH
Confidence 3 23 33566666543
No 396
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.73 E-value=3.7 Score=49.23 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=31.9
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccC
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~ 363 (815)
..+--++|+|..|.+.+ |....-+..+++..+++..+++.|=+-+
T Consensus 127 ~~~pl~LVlDDyHli~~------~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 127 YEGPLYLVLDDYHLISD------PALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred hcCceEEEeccccccCc------ccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 33456999999999985 3444555667778888878888775543
No 397
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=85.60 E-value=6.8 Score=45.59 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.2
Q ss_pred EEEEcCCChhHHHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~ 237 (815)
.|+.||.|+|||.+...-+
T Consensus 39 yLf~Gp~G~GKTt~Ar~LA 57 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFA 57 (535)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4899999999997765443
No 398
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=85.52 E-value=1.6 Score=44.50 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=39.7
Q ss_pred CEEEEcCCChhHHHHHHHHHHHcCCcEEEE-cccHHHHHHHHHhcCCCce--eeeecc--CCChHHHHHHHHHHhcCCce
Q 036378 218 STMLVLPTGAGKSLCYQIPAMILPGLTLVV-CPLVALMIDQLRHLPPVIH--GGFLSS--SQRPEEVAETIRLIQVGAIK 292 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~~~~~~lVl-~P~~~L~~q~~~~l~~~~~--~~~i~~--~~~~~~~~~~~~~l~~g~~~ 292 (815)
++|+.||.|.|||..+.+-+-..+....++ .|..+-..|....+...-. ...+.- .+.....+..+..+.+|.++
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~id 131 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKID 131 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEE
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEE
Confidence 689999999999987777666665544333 3443333333333322111 112211 12333344445566666666
Q ss_pred EEEe
Q 036378 293 VLFV 296 (815)
Q Consensus 293 Ili~ 296 (815)
|+++
T Consensus 132 iiiG 135 (233)
T PF05496_consen 132 IIIG 135 (233)
T ss_dssp EEBS
T ss_pred EEec
Confidence 6665
No 399
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=85.45 E-value=4.7 Score=43.86 Aligned_cols=46 Identities=17% Similarity=0.051 Sum_probs=32.9
Q ss_pred CCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEcccHHHHHHHHHhc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLVALMIDQLRHL 261 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~q~~~~l 261 (815)
|+-+.+.+|.|+|||...+-.+ ...++.+++|....++-.+....+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~l 103 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKL 103 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHc
Confidence 5678899999999996544333 244788999988877766544443
No 400
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.40 E-value=4.6 Score=41.92 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=49.7
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHc----CCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCce
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIK 292 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~----~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~ 292 (815)
.=++++++||||||......+=.+ .+-.+-|---++-+.+..+. -...-..+.....+...+++-....+|
T Consensus 128 GLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPIEfih~h~~C-----IvTQREvGvDTesw~~AlkNtlRQapD 202 (375)
T COG5008 128 GLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPIEFIHKHKRC-----IVTQREVGVDTESWEVALKNTLRQAPD 202 (375)
T ss_pred ceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChHHHHhcccce-----eEEeeeeccchHHHHHHHHHHHhcCCC
Confidence 357889999999998643222111 23344443333433322211 112223445555566666654444566
Q ss_pred EEEeChhhhhchhhhhhhhhcCcccEEEEecccc
Q 036378 293 VLFVSPERFLNADFLSIFTATSLISLVVVDEAHC 326 (815)
Q Consensus 293 Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~ 326 (815)
+++.-- +.+..-.+....+..-+.+++--.|-
T Consensus 203 vI~IGE--vRsretMeyAi~fAeTGHLcmaTLHA 234 (375)
T COG5008 203 VILIGE--VRSRETMEYAIQFAETGHLCMATLHA 234 (375)
T ss_pred eEEEee--cccHhHHHHHHHHHhcCceEEEEecc
Confidence 654321 11111111111255667777776674
No 401
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.37 E-value=1.5 Score=49.78 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHcCC--CEEEEcCCChhHHHH
Q 036378 202 FRDGQLEAIKMVLDKK--STMLVLPTGAGKSLC 232 (815)
Q Consensus 202 ~~~~Q~~ai~~il~g~--d~li~apTGsGKTl~ 232 (815)
+.+.|.+.+..+++.. =+|+.||||||||..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 4677777777777655 357889999999975
No 402
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=85.37 E-value=5.1 Score=42.87 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=15.4
Q ss_pred CCCEEEEcCCChhHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~ 234 (815)
++.++++||||+|||.+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5578899999999996543
No 403
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=85.36 E-value=1.1 Score=49.27 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=28.5
Q ss_pred HHcCCCEEEEcCCChhHHHHHHHHH--HHcCCcEEEEcccHHHH
Q 036378 213 VLDKKSTMLVLPTGAGKSLCYQIPA--MILPGLTLVVCPLVALM 254 (815)
Q Consensus 213 il~g~d~li~apTGsGKTl~~~lp~--l~~~~~~lVl~P~~~L~ 254 (815)
+..+++++++|+||||||...-..+ +-...+++.|-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCcccc
Confidence 4457899999999999997432111 12245677777777774
No 404
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=85.31 E-value=0.65 Score=59.50 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=76.4
Q ss_pred cceEEEecchHHHHHHHHHHhhCC-CcEEEecCCCC-----------HHHHHHHHHHHhcCCceEEEEccccccccccCC
Q 036378 423 YYILQISGKHFETDLISRYLCDNS-ISVKSYHSGIP-----------AKDRSRIQELFCSNKIRVVVATVAFGMGLDKRD 490 (815)
Q Consensus 423 ~~~ivf~~s~~~~e~l~~~L~~~g-~~v~~~h~~~~-----------~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~ 490 (815)
--.++|+..+..+..+.+.++..+ ..+..+.|.+. ...+.+++..|...++.+|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 345778888888888888777643 23333444432 223578999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHHcccCCCC
Q 036378 491 VGAVIHYSLPESLEEYVQEIGRAGRDG 517 (815)
Q Consensus 491 v~~VI~~d~P~s~~~y~Qr~GRaGR~g 517 (815)
+..|++++.|.....|+|..||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997753
No 405
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=85.22 E-value=11 Score=36.56 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 627 KMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 627 ~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.++.++++.. ......+|..+|++..+|++.|..|...|++.|.
T Consensus 18 ~Vl~aL~~~~-------~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 18 LVLFSLGIKG-------EFTDEEISLELGIKLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHHhccC-------CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCceee
Confidence 4555565442 2467789999999999999999999999999987
No 406
>PF13730 HTH_36: Helix-turn-helix domain
Probab=85.20 E-value=2.4 Score=32.81 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=28.2
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEI 674 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i 674 (815)
....++|..+|+++..|.+.|..|++.|+|
T Consensus 26 pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 26 PSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 379999999999999999999999999985
No 407
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=85.18 E-value=3.5 Score=47.97 Aligned_cols=112 Identities=21% Similarity=0.185 Sum_probs=59.9
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCceEEEe
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFV 296 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~ 296 (815)
+-+|+.||.|+|||+.....+...+...+-+... +|+..++ +
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk~v-------------------------------------G 318 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSKWV-------------------------------------G 318 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhcccc-------------------------------------c
Confidence 3689999999999997766655433333322222 4433222 2
Q ss_pred ChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchH-HHHHHHHHHHHHh---cccceeEeeecccChhHHH
Q 036378 297 SPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRP-SYMRLRASLLRAR---LNVECILAMTATATTTTLR 368 (815)
Q Consensus 297 TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~-~~~~i~~~~~~~~---~~~~~vl~lSAT~~~~~~~ 368 (815)
-.|+.....|..... ..-+.|.|||+|.+..+-.+... .-.+++..++... .....++.+-||-.+....
T Consensus 319 esek~ir~~F~~A~~--~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld 392 (494)
T COG0464 319 ESEKNIRELFEKARK--LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLD 392 (494)
T ss_pred hHHHHHHHHHHHHHc--CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccC
Confidence 222222223333221 24578999999999876433221 1234444444433 2233567777776665443
No 408
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=85.17 E-value=3.3 Score=33.62 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=34.7
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAY 683 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~ 683 (815)
....++|..+|++++.|...|+.|..+|+|.-..+.+..
T Consensus 23 ~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~~~~~~ 61 (68)
T PF01978_consen 23 ATAEEIAEELGISRSTVYRALKSLEEKGLVEREEGRPKV 61 (68)
T ss_dssp EEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEEECCEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceEE
Confidence 367889999999999999999999999999988766543
No 409
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.16 E-value=2.9 Score=51.90 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=15.8
Q ss_pred CCEEEEcCCChhHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~l 235 (815)
.+.+++||+|+|||.....
T Consensus 200 ~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 4899999999999976543
No 410
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=85.09 E-value=18 Score=41.08 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 036378 647 IPTVANSIGATTIDVSNQLLNLKM 670 (815)
Q Consensus 647 ~~~~a~~~g~~~~~v~~~l~~l~~ 670 (815)
...+|.+.|.+..+|.+.|++...
T Consensus 398 ~~RIa~GsG~~~~~v~~ll~~~~~ 421 (428)
T TIGR00959 398 RKRIAAGSGTTVQDVNKLIKRFEQ 421 (428)
T ss_pred HHHHHccCCCCHHHHHHHHHHHHH
Confidence 567999999999999999987754
No 411
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=84.95 E-value=0.62 Score=54.94 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=39.6
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHc-CCcEEEEcccHHHHHHHHHhcCC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMIL-PGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~-~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
.++++++||||||||..+.+|.+.. ++-+||+=|--++........++
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~ 206 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREK 206 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 3479999999999999999998654 77899999999998766655544
No 412
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=84.93 E-value=4.9 Score=39.94 Aligned_cols=89 Identities=18% Similarity=0.033 Sum_probs=49.1
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCce
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIK 292 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~ 292 (815)
|+=.++.+|..||||.-.+.-+. ..+.+++|..|.+.- ......+.+..+.. ..-
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~----------R~~~~~V~Sr~G~~------------~~A 61 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDT----------RYGVGKVSSRIGLS------------SEA 61 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccccc----------ccccceeeeccCCc------------ccc
Confidence 34467899999999986554443 337788888886321 11111222211110 123
Q ss_pred EEEeChhhhhchhhhhhhhhcCcccEEEEecccccc
Q 036378 293 VLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVS 328 (815)
Q Consensus 293 Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~ 328 (815)
++|-++..+...+..... ...++.|.||||+-+.
T Consensus 62 ~~i~~~~~i~~~i~~~~~--~~~~~~v~IDEaQF~~ 95 (201)
T COG1435 62 VVIPSDTDIFDEIAALHE--KPPVDCVLIDEAQFFD 95 (201)
T ss_pred eecCChHHHHHHHHhccc--CCCcCEEEEehhHhCC
Confidence 445555555443222111 1238899999999775
No 413
>PRK05973 replicative DNA helicase; Provisional
Probab=84.87 E-value=4.2 Score=42.16 Aligned_cols=61 Identities=16% Similarity=0.023 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEcccHHHHHHHHHhcCC
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
.++|.. +..--+..|.-+++.|++|+|||...+-.+ ...+..+++++-.-. ..|..+++..
T Consensus 50 ~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s 113 (237)
T PRK05973 50 ATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRA 113 (237)
T ss_pred CCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHH
Confidence 455532 233344457788999999999996544332 344666777764432 4555555544
No 414
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.68 E-value=1.9 Score=49.66 Aligned_cols=147 Identities=17% Similarity=0.129 Sum_probs=73.1
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcE
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLT 244 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~ 244 (815)
-+|++.|...++...|..... +- .=+|-+-+++-. -...-+|++||.|+||||.+
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~-----------~P--iK~pd~~k~lGi-~~PsGvLL~GPPGCGKTLlA----------- 562 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAIL-----------AP--IKRPDLFKALGI-DAPSGVLLCGPPGCGKTLLA----------- 562 (802)
T ss_pred CChhhcccHHHHHHHHHHHHh-----------hh--ccCHHHHHHhCC-CCCCceEEeCCCCccHHHHH-----------
Confidence 588999888888777766311 01 111222222211 11456899999999999843
Q ss_pred EEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEec
Q 036378 245 LVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDE 323 (815)
Q Consensus 245 lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDE 323 (815)
+-+..+-.. ++. +. +.+. .+..|+--|+-....|..... +.-+.|.+||
T Consensus 563 ----------KAVANEag~NFis---VK----GPEL-----------lNkYVGESErAVR~vFqRAR~--saPCVIFFDE 612 (802)
T KOG0733|consen 563 ----------KAVANEAGANFIS---VK----GPEL-----------LNKYVGESERAVRQVFQRARA--SAPCVIFFDE 612 (802)
T ss_pred ----------HHHhhhccCceEe---ec----CHHH-----------HHHHhhhHHHHHHHHHHHhhc--CCCeEEEecc
Confidence 222222221 110 00 0000 112233334444444444332 3457888999
Q ss_pred cccccc-cccCchHHHHHHHHHHHHHhcc---cceeEeeecccChhH
Q 036378 324 AHCVSE-WSHNFRPSYMRLRASLLRARLN---VECILAMTATATTTT 366 (815)
Q Consensus 324 aH~i~~-~g~~fr~~~~~i~~~~~~~~~~---~~~vl~lSAT~~~~~ 366 (815)
.|-+.- -++.-...-.+++..++-..-. ...|..+-||--++.
T Consensus 613 iDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 613 IDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred hhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 998742 1222223334454555544322 246777788866654
No 415
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=84.67 E-value=5.9 Score=45.76 Aligned_cols=90 Identities=20% Similarity=0.242 Sum_probs=56.6
Q ss_pred ccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHH-H-HH------
Q 036378 168 SELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIP-A-MI------ 239 (815)
Q Consensus 168 ~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp-~-l~------ 239 (815)
.+-+..++++....+..++..+..+..-. -+.|-++|.. -.++-++++|..|||||.+.+-= | |.
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TI------QkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~ 257 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETI------QKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGP 257 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHh------hHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccc
Confidence 34456666666665555555554444321 1234444321 13556788999999999765422 1 21
Q ss_pred -cCCcEEEEcccHHHHHHHHHhcCCC
Q 036378 240 -LPGLTLVVCPLVALMIDQLRHLPPV 264 (815)
Q Consensus 240 -~~~~~lVl~P~~~L~~q~~~~l~~~ 264 (815)
..+.+||+.|.+.++.=+...|..+
T Consensus 258 l~~k~vlvl~PN~vFleYis~VLPeL 283 (747)
T COG3973 258 LQAKPVLVLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred cccCceEEEcCcHHHHHHHHHhchhh
Confidence 2456999999999999888888873
No 416
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=84.61 E-value=8.4 Score=42.54 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.8
Q ss_pred CEEEEcCCChhHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 218 d~li~apTGsGKTl~~~ 234 (815)
-+|+.||.|.|||....
T Consensus 47 a~L~~G~~G~GKttlA~ 63 (351)
T PRK09112 47 ALLFEGPEGIGKATLAF 63 (351)
T ss_pred eEeeECCCCCCHHHHHH
Confidence 48999999999995443
No 417
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=84.59 E-value=2.7 Score=46.76 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.7
Q ss_pred cCCCEEEEcCCChhHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~l 235 (815)
.|+-+++++|+|+|||.....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~ 187 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK 187 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH
Confidence 588999999999999975443
No 418
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.57 E-value=4.7 Score=49.96 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=22.3
Q ss_pred HHHHHHHHHHc-------C-----C---CEEEEcCCChhHHHHHH
Q 036378 205 GQLEAIKMVLD-------K-----K---STMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 205 ~Q~~ai~~il~-------g-----~---d~li~apTGsGKTl~~~ 234 (815)
+|.+|+..+.+ | + .++++||||+|||....
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETAL 614 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHH
Confidence 68888877642 1 1 37999999999997654
No 419
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=84.48 E-value=8.4 Score=43.87 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=30.2
Q ss_pred cccEEEEeccccccccccCchHHHHH-HHHHHHHH---hcccceeEeeecccChhHHHH
Q 036378 315 LISLVVVDEAHCVSEWSHNFRPSYMR-LRASLLRA---RLNVECILAMTATATTTTLRD 369 (815)
Q Consensus 315 ~i~~lViDEaH~i~~~g~~fr~~~~~-i~~~~~~~---~~~~~~vl~lSAT~~~~~~~~ 369 (815)
.-+.|.|||.|-+..--......|.+ .+..++-. ...+.-||.+.||-.++.+..
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 45788899999986311011111221 11222322 233457999999988876543
No 420
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=84.48 E-value=0.96 Score=50.03 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.4
Q ss_pred CCCEEEEcCCChhHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~ 233 (815)
+.-++++||||||||...
T Consensus 134 ~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLL 151 (358)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 668899999999999753
No 421
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=84.44 E-value=6.6 Score=35.75 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=61.1
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
++.+||.++++.-+.+..+.|.+ ......+++.+...+.......+..+...|+++|.... ..+. +...+.+
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~------~G~d-~~~~~~v 100 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIA------RGID-LPNVSVV 100 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhh------cCcC-hhhCCEE
Confidence 67899999999999999999876 56677888888888889999999999999999985322 1222 4457777
Q ss_pred EEeccc
Q 036378 320 VVDEAH 325 (815)
Q Consensus 320 ViDEaH 325 (815)
|+....
T Consensus 101 i~~~~~ 106 (131)
T cd00079 101 INYDLP 106 (131)
T ss_pred EEeCCC
Confidence 776664
No 422
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.43 E-value=5.2 Score=46.24 Aligned_cols=105 Identities=16% Similarity=-0.016 Sum_probs=72.7
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
..++||.++++.-+....+.|.. ++....+++.+...++...++.++.|+.+|||+|.- ....+. +..+++|
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~------l~~GID-i~~v~~V 407 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDV------AGRGIH-IDGISHV 407 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccc------cccCCc-ccCCCEE
Confidence 45899999999999999888876 667788889999999999999999999999999931 122223 6688888
Q ss_pred EEeccccccccccCchHHHHHHHHHHHHHhcccceeEeee
Q 036378 320 VVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359 (815)
Q Consensus 320 ViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lS 359 (815)
|.-..= ....+|.....+.-|......-+++++
T Consensus 408 I~~~~P-------~s~~~y~Qr~GRaGR~g~~g~~i~~~~ 440 (475)
T PRK01297 408 INFTLP-------EDPDDYVHRIGRTGRAGASGVSISFAG 440 (475)
T ss_pred EEeCCC-------CCHHHHHHhhCccCCCCCCceEEEEec
Confidence 864321 223445544344444333333444443
No 423
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.38 E-value=3.8 Score=45.22 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.4
Q ss_pred CCCEEEEcCCChhHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~ 233 (815)
+..++++||||||||...
T Consensus 122 ~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567899999999999754
No 424
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=84.30 E-value=4.4 Score=48.69 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=19.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPG 242 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~ 242 (815)
.+.+++++|+|+|||......+-..+.
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 346999999999999866544433343
No 425
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=84.21 E-value=2.8 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.227 Sum_probs=17.2
Q ss_pred CCCEEEEcCCChhHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~ 237 (815)
+..++++||+|+|||.....-+
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA 368 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIA 368 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4468999999999998665444
No 426
>CHL00195 ycf46 Ycf46; Provisional
Probab=84.19 E-value=5.7 Score=45.87 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=17.6
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l 238 (815)
.+.+|+.||.|+|||+..-.-+-
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999986544433
No 427
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=84.17 E-value=16 Score=41.57 Aligned_cols=110 Identities=11% Similarity=-0.005 Sum_probs=53.0
Q ss_pred cCCCEEEEcCCChhHHHHHHHHHH----HcCCcEEEEcccHHHHHHHHHhcCC---Cceeeee-ccCCChHHHHH---HH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPAM----ILPGLTLVVCPLVALMIDQLRHLPP---VIHGGFL-SSSQRPEEVAE---TI 283 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~l----~~~~~~lVl~P~~~L~~q~~~~l~~---~~~~~~i-~~~~~~~~~~~---~~ 283 (815)
.|.-+++.|++|+|||...+--+. ..+..+++++.- .-..|...++-. ++....+ .......++.. ..
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE-m~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE-MSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 356678899999999965443331 235667777622 223333333321 2221111 22233333322 23
Q ss_pred HHHhcCCceEEEeChh-----hhhchhhhhhhhhcCcccEEEEecccccc
Q 036378 284 RLIQVGAIKVLFVSPE-----RFLNADFLSIFTATSLISLVVVDEAHCVS 328 (815)
Q Consensus 284 ~~l~~g~~~Ili~TPe-----~L~~~~~~~~~~~~~~i~~lViDEaH~i~ 328 (815)
..+.. ..+.|.... .+...... .......+++||||=.|.+.
T Consensus 272 ~~l~~--~~l~i~d~~~~t~~~i~~~~r~-~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 272 DRLSE--KDLYIDDTGGLTVAQIRSIARR-IKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHhc--CCEEEECCCCCCHHHHHHHHHH-HHHhcCCCCEEEEecccccC
Confidence 33333 344553332 22221111 11112368999999988885
No 428
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.14 E-value=1.4 Score=46.77 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=25.4
Q ss_pred cCCCEEEEcCCChhHHHHHHHHH--HHcC-CcEEEEcccHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPA--MILP-GLTLVVCPLVALM 254 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~--l~~~-~~~lVl~P~~~L~ 254 (815)
.+..++++|+||||||......+ +... ..++++-...|+.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 46799999999999997542222 1223 5666666665553
No 429
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=84.00 E-value=0.82 Score=45.02 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=29.3
Q ss_pred CceEEEeChhhhhchhhhhhhh-hcCcccEEEEeccccccc
Q 036378 290 AIKVLFVSPERFLNADFLSIFT-ATSLISLVVVDEAHCVSE 329 (815)
Q Consensus 290 ~~~Ili~TPe~L~~~~~~~~~~-~~~~i~~lViDEaH~i~~ 329 (815)
.++|||++..-|++......+. ....-.+|||||||.+.+
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 5899999999999876655543 223557999999999865
No 430
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=83.95 E-value=2.6 Score=47.95 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=62.3
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
..++||.++++.-+....+.|.. +++...+++.+...++...++.+..|+++|||+|. .....+. +..+++|
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd------v~~rGiD-ip~v~~V 327 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD------VAARGLH-IPAVTHV 327 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec------hhhcCCC-ccccCEE
Confidence 57899999999999999999976 77888899999999999999999999999999993 1222233 6677877
Q ss_pred EEec
Q 036378 320 VVDE 323 (815)
Q Consensus 320 ViDE 323 (815)
|.-+
T Consensus 328 I~~d 331 (423)
T PRK04837 328 FNYD 331 (423)
T ss_pred EEeC
Confidence 6543
No 431
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.93 E-value=6.1 Score=45.37 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=62.0
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
++++||.|-|+--+.+....+.. ..++..+++..+..++...++..++|++.|||+|-=. ...+. +.+|++|
T Consensus 341 ~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA------aRGLD-i~dV~lV 413 (519)
T KOG0331|consen 341 EGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA------ARGLD-VPDVDLV 413 (519)
T ss_pred CCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccc------cccCC-CccccEE
Confidence 46899999999999999999998 5899999999999999999999999999999999422 12222 5567777
Q ss_pred EE
Q 036378 320 VV 321 (815)
Q Consensus 320 Vi 321 (815)
|-
T Consensus 414 In 415 (519)
T KOG0331|consen 414 IN 415 (519)
T ss_pred Ee
Confidence 64
No 432
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=83.90 E-value=5.6 Score=45.37 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=61.6
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
..++||.+++++-+...+..|.. ++....+++.+...++...++.++.|.++|||+|- .....+. +.++++|
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd------~~~~GiD-ip~v~~V 317 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD------VAARGID-IDDVSHV 317 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc------ccccCcc-CCCCCEE
Confidence 57899999999999999999987 67888999999999999999999999999999993 1122233 5677877
Q ss_pred EE
Q 036378 320 VV 321 (815)
Q Consensus 320 Vi 321 (815)
|.
T Consensus 318 I~ 319 (434)
T PRK11192 318 IN 319 (434)
T ss_pred EE
Confidence 74
No 433
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=83.84 E-value=3.3 Score=47.72 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=62.7
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
...+||.++++.-+...++.|.. ++....+++.+...++...++..++|..+|||+|-- ....+. +.++++|
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv------~~rGiD-i~~v~~V 314 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDV------AARGLD-IKALEAV 314 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecc------cccccc-hhcCCeE
Confidence 56799999999999999999987 677888999999999999999999999999999931 122222 5677887
Q ss_pred EEecc
Q 036378 320 VVDEA 324 (815)
Q Consensus 320 ViDEa 324 (815)
|.-+.
T Consensus 315 I~~d~ 319 (460)
T PRK11776 315 INYEL 319 (460)
T ss_pred EEecC
Confidence 76443
No 434
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=83.82 E-value=3.8 Score=49.32 Aligned_cols=28 Identities=43% Similarity=0.555 Sum_probs=22.3
Q ss_pred HHHHHHHHHHc------------C---CCEEEEcCCChhHHHH
Q 036378 205 GQLEAIKMVLD------------K---KSTMLVLPTGAGKSLC 232 (815)
Q Consensus 205 ~Q~~ai~~il~------------g---~d~li~apTGsGKTl~ 232 (815)
+|.+||.++.+ + .++|..||||.|||..
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTEL 537 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTEL 537 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHH
Confidence 58999988764 1 3679999999999963
No 435
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=83.53 E-value=3.5 Score=48.47 Aligned_cols=105 Identities=20% Similarity=0.177 Sum_probs=83.7
Q ss_pred ccceEEEecchHHHHHHHHHHhhCC------------------CcEEEecCCCCHHHHHHHHHHHhcC--C-ceEEEEcc
Q 036378 422 HYYILQISGKHFETDLISRYLCDNS------------------ISVKSYHSGIPAKDRSRIQELFCSN--K-IRVVVATV 480 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~g------------------~~v~~~h~~~~~~~R~~i~~~F~~g--~-~~VLVaT~ 480 (815)
+.++++|..+-...+.+.+.|.+.. ....-+.|..+..+|++.+++|.+. - .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 3456777777777788888887632 2234567788889999999999863 2 35788999
Q ss_pred ccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEe
Q 036378 481 AFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526 (815)
Q Consensus 481 ~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~ 526 (815)
+..-|||+-...-+|.||..++.-.-.|.+-|.-|-|+..-|+++-
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999999988888999999999988899999999999987777664
No 436
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=83.53 E-value=1.2 Score=51.74 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCChhHHHHHHHHHH
Q 036378 201 SFRDGQLEAIKMVL----DKKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 201 ~~~~~Q~~ai~~il----~g~d~li~apTGsGKTl~~~lp~l 238 (815)
+|..+|.+.+..+. .|+-.|+..|||+||||..+-.++
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 57788988777654 589889999999999987665554
No 437
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=83.49 E-value=8.6 Score=37.24 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=33.2
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHH
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~ 367 (815)
...+++||+||+=....+|---.... ..+++.++....+|+.+-.++++..
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v----~~ll~~rp~~~evIlTGr~~p~~l~ 143 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEV----VDLLKAKPEDLELVLTGRNAPKELI 143 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHH----HHHHHcCCCCCEEEEECCCCCHHHH
Confidence 45789999999988877643323333 3456666666667766666665544
No 438
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.35 E-value=13 Score=43.03 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=16.6
Q ss_pred EEEEcCCChhHHHHHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~l~ 239 (815)
+|+.||.|+|||.+..+-+-.
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~ 61 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKV 61 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999877665543
No 439
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=83.28 E-value=13 Score=44.66 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=16.3
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
-+|+.||.|+|||.++.+-+
T Consensus 42 AYLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 35899999999998776554
No 440
>PRK10436 hypothetical protein; Provisional
Probab=83.27 E-value=3.1 Score=47.62 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHc--CCCEEEEcCCChhHHHHH
Q 036378 203 RDGQLEAIKMVLD--KKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 203 ~~~Q~~ai~~il~--g~d~li~apTGsGKTl~~ 233 (815)
.+.|.+.+..++. +.-+|+.||||||||.+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 3444444544443 446889999999999753
No 441
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=83.12 E-value=2.3 Score=46.63 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=45.2
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCceEEEe
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFV 296 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~ 296 (815)
+-+++.+|.|+|||+..-..+-..+...++++.. +| ..=.++
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~~~i~vsa~-eL-------------------------------------~sk~vG 190 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAG-EL-------------------------------------ESENAG 190 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHH-Hh-------------------------------------hcCcCC
Confidence 4578899999999986555544444433333221 11 122345
Q ss_pred Chhhhhchhhhhhhhh---cCcccEEEEecccccc
Q 036378 297 SPERFLNADFLSIFTA---TSLISLVVVDEAHCVS 328 (815)
Q Consensus 297 TPe~L~~~~~~~~~~~---~~~i~~lViDEaH~i~ 328 (815)
-||+++...|...... -..-++|+|||.|-+.
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 6777766666544321 1256899999999765
No 442
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=83.11 E-value=0.97 Score=50.17 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=14.8
Q ss_pred CCCEEEEcCCChhHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~ 233 (815)
+..++++||||||||...
T Consensus 149 ~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA 166 (372)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 446899999999999753
No 443
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=82.97 E-value=5.6 Score=41.23 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=25.6
Q ss_pred HHHcCC-CEEEEcCCChhHHHHHHHH-HHHc-CCcEEEEcccHHH
Q 036378 212 MVLDKK-STMLVLPTGAGKSLCYQIP-AMIL-PGLTLVVCPLVAL 253 (815)
Q Consensus 212 ~il~g~-d~li~apTGsGKTl~~~lp-~l~~-~~~~lVl~P~~~L 253 (815)
.+..|+ -+.++++.|||||..-... +... +..++|+.|-..+
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~ 90 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTL 90 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcch
Confidence 344566 6678999999999887621 2222 3445545554433
No 444
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.93 E-value=4.3 Score=46.84 Aligned_cols=55 Identities=24% Similarity=0.281 Sum_probs=32.6
Q ss_pred ccEEEEecccccc---ccccCchHHHHHHHHHHHHHh-------cccceeEeeecccChhHHHHHHH
Q 036378 316 ISLVVVDEAHCVS---EWSHNFRPSYMRLRASLLRAR-------LNVECILAMTATATTTTLRDVMS 372 (815)
Q Consensus 316 i~~lViDEaH~i~---~~g~~fr~~~~~i~~~~~~~~-------~~~~~vl~lSAT~~~~~~~~i~~ 372 (815)
-+++.|||.|-+. +| .-|.--.+|+..++... ....+|+...||--++.+.-..+
T Consensus 283 PcivFiDeIDAI~pkRe~--aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR 347 (802)
T KOG0733|consen 283 PCIVFIDEIDAITPKREE--AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR 347 (802)
T ss_pred CeEEEeecccccccchhh--HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh
Confidence 4788999999986 23 22333344444444321 12357888999977766544433
No 445
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=82.79 E-value=1 Score=53.78 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=37.7
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHc-CCcEEEEcccHHHHHHHHHhc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMIL-PGLTLVVCPLVALMIDQLRHL 261 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~-~~~~lVl~P~~~L~~q~~~~l 261 (815)
.++++++||||||||..+.+|.+.. .+-+||+=|--++........
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R 185 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRAR 185 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHH
Confidence 4589999999999999999997655 678999999888876654433
No 446
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=82.65 E-value=6.3 Score=31.60 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=36.5
Q ss_pred HHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEec
Q 036378 627 KMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELK 679 (815)
Q Consensus 627 ~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~ 679 (815)
.+...+.... -..|.....+..+|..+|+++.-|+++|+.|...|++.-..+
T Consensus 8 ~l~~~I~~g~-~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~~ 59 (64)
T PF00392_consen 8 QLRQAILSGR-LPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIERRPG 59 (64)
T ss_dssp HHHHHHHTTS-S-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHcCC-CCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEECC
Confidence 3444444442 123444448999999999999999999999999999987644
No 447
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=82.60 E-value=11 Score=38.96 Aligned_cols=36 Identities=11% Similarity=-0.013 Sum_probs=25.5
Q ss_pred cCCCEEEEcCCChhHHHHH-HHHH--HHcCCcEEEEccc
Q 036378 215 DKKSTMLVLPTGAGKSLCY-QIPA--MILPGLTLVVCPL 250 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~-~lp~--l~~~~~~lVl~P~ 250 (815)
.|.-+++.+++|+|||... ++.. +..+..+++++..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4778899999999999763 3332 2446678887743
No 448
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=82.58 E-value=4.4 Score=50.09 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=79.7
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCc
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~ 243 (815)
...|+++|....++..|++...-.-+..-.-..|+.. -.+-+|.++|.|+|||+..-
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it--------------pPrgvL~~GppGTGkTl~ar--------- 317 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT--------------PPRGVLFHGPPGTGKTLMAR--------- 317 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC--------------CCcceeecCCCCCchhHHHH---------
Confidence 3688899988888888888432222211111112221 24569999999999998642
Q ss_pred EEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEec
Q 036378 244 TLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDE 323 (815)
Q Consensus 244 ~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDE 323 (815)
+|+...-..-.+. ...+..+ .. ...--|+..||=+..+|...-. .....+.+||
T Consensus 318 --------aLa~~~s~~~~ki------sffmrkg------aD----~lskwvgEaERqlrllFeeA~k--~qPSIIffde 371 (1080)
T KOG0732|consen 318 --------ALAAACSRGNRKI------SFFMRKG------AD----CLSKWVGEAERQLRLLFEEAQK--TQPSIIFFDE 371 (1080)
T ss_pred --------hhhhhhccccccc------chhhhcC------ch----hhccccCcHHHHHHHHHHHHhc--cCceEEeccc
Confidence 2222221111110 0000000 00 1233456666666666666543 3567888999
Q ss_pred ccccc----ccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHH
Q 036378 324 AHCVS----EWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL 367 (815)
Q Consensus 324 aH~i~----~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~ 367 (815)
++-+. .|--.-..+....+-.++.......|++.++||.-+..+
T Consensus 372 IdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 372 IDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred cccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99432 111111111222212223333345599999999766544
No 449
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=82.48 E-value=8.1 Score=40.19 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=79.2
Q ss_pred HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCC----ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHc
Q 036378 436 DLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK----IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIG 511 (815)
Q Consensus 436 e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~----~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~G 511 (815)
+.|-+.+.. ++.+..++++.+.+. -.|.++. ..|+|+=+.++||+.+++..+....--+....++.|+.=
T Consensus 101 ~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgR 174 (239)
T PF10593_consen 101 PELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGR 174 (239)
T ss_pred HHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhh
Confidence 344444444 788888887766543 4455543 789999999999999999999998888888888888864
Q ss_pred ccC-CCCCCceEEEEeccccHHHHHHhhhcCCCCHHHHHHHHHHH
Q 036378 512 RAG-RDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQV 555 (815)
Q Consensus 512 RaG-R~g~~g~~i~l~~~~d~~~l~~~~~~~~~~~~~i~~~l~~~ 555 (815)
=.| |.|-...|=++.+++-...++.+.. ....+++.+..+
T Consensus 175 wFGYR~gY~dl~Ri~~~~~l~~~f~~i~~----~~e~lr~~i~~~ 215 (239)
T PF10593_consen 175 WFGYRPGYEDLCRIYMPEELYDWFRHIAE----AEEELREEIKEM 215 (239)
T ss_pred cccCCcccccceEEecCHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 444 6666788999988876666666642 234555555544
No 450
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=82.46 E-value=14 Score=36.31 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=30.1
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhH
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~ 366 (815)
..+++||+||+=....+|-=-.... ..++..+++...+++..-.++++.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v----~~lL~~rp~~~evVlTGR~~p~~l 144 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEV----VEALQERPGHQHVIITGRGCPQDL 144 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHH----HHHHHhCCCCCEEEEECCCCCHHH
Confidence 4789999999998877743222222 245666666656665444454443
No 451
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=82.41 E-value=15 Score=43.27 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.2
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
-+|+.||.|+|||.+..+.+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lA 59 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFA 59 (563)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999998766554
No 452
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=82.38 E-value=5.1 Score=43.03 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=59.7
Q ss_pred CCcEEEEcccHHHHHHHHHhcCCCceeeeecc-CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSS-SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~-~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
+..++|..|+++.|+|....+++.+....+.+ ......+.+..+.+++|..+|||+|. +..... .+.+++.+
T Consensus 305 ~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT------ILERGV-Tfp~vdV~ 377 (441)
T COG4098 305 GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTT------ILERGV-TFPNVDVF 377 (441)
T ss_pred CCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEee------hhhccc-ccccceEE
Confidence 56799999999999999999977554433222 22334566778889999999999993 112222 27899999
Q ss_pred EEecccccc
Q 036378 320 VVDEAHCVS 328 (815)
Q Consensus 320 ViDEaH~i~ 328 (815)
|++--|.+.
T Consensus 378 Vlgaeh~vf 386 (441)
T COG4098 378 VLGAEHRVF 386 (441)
T ss_pred EecCCcccc
Confidence 999988774
No 453
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=82.36 E-value=22 Score=32.51 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=37.6
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI 687 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~ 687 (815)
..+.++|..+|++.+.|-+.|..|.+.|+|..+.......|.+
T Consensus 31 ~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l 73 (117)
T PRK10141 31 LCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRL 73 (117)
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEcCEEEEEE
Confidence 3677899999999999999999999999999997666666666
No 454
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.23 E-value=15 Score=38.93 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=63.7
Q ss_pred CEEEEcCCChhHHHHHHHHHHHc-CCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCceEEEe
Q 036378 218 STMLVLPTGAGKSLCYQIPAMIL-PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFV 296 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~~-~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~ 296 (815)
-+|+.+|.|+|||.. .-++.. ..-+.+-+.+-.|+..|..+
T Consensus 168 giLLyGPPGTGKSYL--AKAVATEAnSTFFSvSSSDLvSKWmGE------------------------------------ 209 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYL--AKAVATEANSTFFSVSSSDLVSKWMGE------------------------------------ 209 (439)
T ss_pred eEEEeCCCCCcHHHH--HHHHHhhcCCceEEeehHHHHHHHhcc------------------------------------
Confidence 478999999999853 333322 22455555555665554322
Q ss_pred ChhhhhchhhhhhhhhcCcccEEEEeccccccccc-cCchHHHHHHHHHHHHHhcc----cceeEeeecccChhHHHHH
Q 036378 297 SPERFLNADFLSIFTATSLISLVVVDEAHCVSEWS-HNFRPSYMRLRASLLRARLN----VECILAMTATATTTTLRDV 370 (815)
Q Consensus 297 TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g-~~fr~~~~~i~~~~~~~~~~----~~~vl~lSAT~~~~~~~~i 370 (815)
.|+|...+|.-.. -..-+.|.|||+|.+..-+ .+-...-++|...++-+... ..-+|.|.||-.+-++...
T Consensus 210 -SEkLVknLFemAR--e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 210 -SEKLVKNLFEMAR--ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred -HHHHHHHHHHHHH--hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHH
Confidence 2333333332211 2356789999999775321 13334555665555544332 3368899999888776544
No 455
>PRK14701 reverse gyrase; Provisional
Probab=82.04 E-value=4.4 Score=53.42 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=54.7
Q ss_pred cccceEEEecchHHHHHHHHHHhh------CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccc
Q 036378 421 KHYYILQISGKHFETDLISRYLCD------NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~------~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~ 482 (815)
++..+++++.|+.-+.++++.|+. .++.+..+||+++..++.++++.+.+|+.+|||+|..+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgr 188 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQF 188 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCch
Confidence 456789999999999999988876 35678899999999999999999999999999999864
No 456
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=81.97 E-value=1.6 Score=52.76 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHH-HH-HH---HcCCcEEEEcccHHHHHHHHHhcCCC-ce-eeeec
Q 036378 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQ-IP-AM---ILPGLTLVVCPLVALMIDQLRHLPPV-IH-GGFLS 271 (815)
Q Consensus 199 ~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~-lp-~l---~~~~~~lVl~P~~~L~~q~~~~l~~~-~~-~~~i~ 271 (815)
+-.|+|-|.++|..-....++++++|+|+|||-... +. .+ .-..+++|++-...-++|..+.+.+. +. ...+.
T Consensus 736 ~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~d~rhLlr 815 (1320)
T KOG1806|consen 736 QVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDVDERHLLR 815 (1320)
T ss_pred hhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcccchhhHHH
Confidence 346789999999999999999999999999995432 22 22 22678999999999999988877662 11 12223
Q ss_pred cCCChHHHHHHHHHHhcCCceEEEeChhhhhc
Q 036378 272 SSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303 (815)
Q Consensus 272 ~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~ 303 (815)
.+.+.++.....+--+.|.+..+++-|--++.
T Consensus 816 lg~ge~eletd~dfsrygrvn~~l~~r~~ll~ 847 (1320)
T KOG1806|consen 816 LGHGEEELETDKDFSRYGRVNYVLSRRLELLR 847 (1320)
T ss_pred hcccHHhhhcccchhheeeEeeeeccchHHHH
Confidence 33333344433333345656666655544443
No 457
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=81.95 E-value=4.3 Score=41.28 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.4
Q ss_pred CCCEEEEcCCChhHHHH
Q 036378 216 KKSTMLVLPTGAGKSLC 232 (815)
Q Consensus 216 g~d~li~apTGsGKTl~ 232 (815)
++.+++.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 46788999999999974
No 458
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=81.88 E-value=6.6 Score=48.94 Aligned_cols=118 Identities=13% Similarity=0.128 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH------------------------------------HcCCcEEEE
Q 036378 204 DGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM------------------------------------ILPGLTLVV 247 (815)
Q Consensus 204 ~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l------------------------------------~~~~~~lVl 247 (815)
--|++-+..+...=|+|-...|=-=.||=..+.-+ .++|++.+|
T Consensus 730 Vk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv 809 (1139)
T COG1197 730 VKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYV 809 (1139)
T ss_pred ccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEE
Confidence 36999999999888999999988888874332211 128999999
Q ss_pred cccHHHHHHHHHhcCCCce---eeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEecc
Q 036378 248 CPLVALMIDQLRHLPPVIH---GGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEA 324 (815)
Q Consensus 248 ~P~~~L~~q~~~~l~~~~~---~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEa 324 (815)
.|.++=+.+....|+..++ .+..++.|...+..+.+....+|+++||+||. +....+. ..+...|||+-|
T Consensus 810 ~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtGID-IPnANTiIIe~A 882 (1139)
T COG1197 810 HNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETGID-IPNANTIIIERA 882 (1139)
T ss_pred ecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecCcC-CCCCceEEEecc
Confidence 9999999999999998654 56678889999999999999999999999994 2233334 778999999999
Q ss_pred cccc
Q 036378 325 HCVS 328 (815)
Q Consensus 325 H~i~ 328 (815)
|++.
T Consensus 883 D~fG 886 (1139)
T COG1197 883 DKFG 886 (1139)
T ss_pred cccc
Confidence 9984
No 459
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=81.63 E-value=1.1 Score=53.60 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=38.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHc-CCcEEEEcccHHHHHHHHHhcC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMIL-PGLTLVVCPLVALMIDQLRHLP 262 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~-~~~~lVl~P~~~L~~q~~~~l~ 262 (815)
.++++++||||||||..+.+|.+.. .+-+||+=|--|+........+
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~ 191 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRA 191 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHH
Confidence 4689999999999999999998754 7789999999888765544433
No 460
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=81.46 E-value=1.6 Score=47.80 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=26.0
Q ss_pred HHcCCCEEEEcCCChhHHHHH--HHHHHHcCCcEEEEcccHHHH
Q 036378 213 VLDKKSTMLVLPTGAGKSLCY--QIPAMILPGLTLVVCPLVALM 254 (815)
Q Consensus 213 il~g~d~li~apTGsGKTl~~--~lp~l~~~~~~lVl~P~~~L~ 254 (815)
+..+++++++|+||||||... ++..+-...++++|=-+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccc
Confidence 345789999999999999642 111122244566654555543
No 461
>PRK08840 replicative DNA helicase; Provisional
Probab=81.31 E-value=25 Score=40.51 Aligned_cols=111 Identities=9% Similarity=0.005 Sum_probs=54.4
Q ss_pred cCCCEEEEcCCChhHHHHHHHHH----HHcCCcEEEEcccHHHHHHHHHhcCC---Cceeeee-ccCCChHHHHHHH---
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPA----MILPGLTLVVCPLVALMIDQLRHLPP---VIHGGFL-SSSQRPEEVAETI--- 283 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~----l~~~~~~lVl~P~~~L~~q~~~~l~~---~~~~~~i-~~~~~~~~~~~~~--- 283 (815)
.|.=+++.|.+|.|||...+-.+ ...+..+++++.- -=..|.+.++-. .+....+ ...+...++....
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~ 294 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE-MPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTM 294 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 34556778999999997543222 2234556676544 224455555433 2222212 2234555554432
Q ss_pred HHHhcCCceEEEe-Ch----hhhhchhhhhhhhhcCcccEEEEecccccc
Q 036378 284 RLIQVGAIKVLFV-SP----ERFLNADFLSIFTATSLISLVVVDEAHCVS 328 (815)
Q Consensus 284 ~~l~~g~~~Ili~-TP----e~L~~~~~~~~~~~~~~i~~lViDEaH~i~ 328 (815)
..+.. +..+.|- +| ..+......- ......+++||||=.|.|.
T Consensus 295 ~~l~~-~~~l~I~d~~~~ti~~i~~~~r~~-~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 295 GILME-KKNMYIDDSSGLTPTEVRSRARRI-AREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHh-cCCEEEECCCCCCHHHHHHHHHHH-HHhcCCCCEEEEccHHhcC
Confidence 22321 2234442 22 2332211111 1112358999999999885
No 462
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.26 E-value=15 Score=43.91 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=16.5
Q ss_pred CEEEEcCCChhHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l 238 (815)
-+|+.||.|+|||.+..+-+-
T Consensus 41 ayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 378999999999987655543
No 463
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=81.24 E-value=3.2 Score=32.99 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=30.7
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
+...++|..+|++++-|-..|+.|...|++.|+.
T Consensus 23 v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 23 VRTKDIAERLGVSPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp BBHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET
T ss_pred ccHHHHHHHHCCChHHHHHHHHHHHHCCCEEecC
Confidence 5688999999999999999999999999999974
No 464
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.11 E-value=2.7 Score=45.56 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHH-HHHcCCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHHHH
Q 036378 199 YDSFRDGQLEAIK-MVLDKKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVALM 254 (815)
Q Consensus 199 ~~~~~~~Q~~ai~-~il~g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~L~ 254 (815)
+..+.+.|..-+. ++..+++++++++||||||.. +.+++ -...+.+.+=-+.++.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~rivtIEdt~E~~ 183 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEERIVTIEDTPELK 183 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchhcEEEEecccccc
Confidence 3456666655444 455678999999999999964 23322 2245566665555554
No 465
>PF05729 NACHT: NACHT domain
Probab=81.08 E-value=7.7 Score=37.05 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=13.8
Q ss_pred CEEEEcCCChhHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 218 d~li~apTGsGKTl~~~ 234 (815)
-+++.|+.|+|||....
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 36899999999997543
No 466
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=81.01 E-value=12 Score=37.29 Aligned_cols=34 Identities=24% Similarity=0.012 Sum_probs=25.4
Q ss_pred cCCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEc
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVC 248 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~ 248 (815)
....+++..++|-|||.+.+--++ ..+.+|+|+-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 456889999999999987765444 4467777764
No 467
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=80.97 E-value=4.1 Score=44.71 Aligned_cols=34 Identities=18% Similarity=0.023 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHc--CC---CEEEEcCCChhHHHHHHHH
Q 036378 203 RDGQLEAIKMVLD--KK---STMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 203 ~~~Q~~ai~~il~--g~---d~li~apTGsGKTl~~~lp 236 (815)
.|+|..++..+.. ++ -.|+.||.|.||+......
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~ 41 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHL 41 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHH
Confidence 4777777777664 33 5689999999999655443
No 468
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=80.95 E-value=4.1 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=18.1
Q ss_pred CEEEEcCCChhHHHHHHHHHHHc
Q 036378 218 STMLVLPTGAGKSLCYQIPAMIL 240 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~~ 240 (815)
-.+..||-|.|||.+.-+-|-..
T Consensus 40 AYlfsG~RGvGKTt~Ari~Akal 62 (515)
T COG2812 40 AYLFSGPRGVGKTTIARILAKAL 62 (515)
T ss_pred hhhhcCCCCcCchhHHHHHHHHh
Confidence 45889999999999876666444
No 469
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=80.93 E-value=3.8 Score=30.33 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=31.0
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
....++|..+|++++.|.+.|..|.+.|++....
T Consensus 9 ~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~~~ 42 (48)
T smart00419 9 LTRQEIAELLGLTRETVSRTLKRLEKEGLISREG 42 (48)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 4588999999999999999999999999998764
No 470
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=80.86 E-value=6.7 Score=42.59 Aligned_cols=42 Identities=14% Similarity=-0.029 Sum_probs=29.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEcccHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLVALMIDQ 257 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~q~ 257 (815)
|+-+++.+|+|+|||...+-.+ ...++.+++|....++-.+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~ 99 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVY 99 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHH
Confidence 5678899999999996533222 24477888887766655543
No 471
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=80.84 E-value=21 Score=35.42 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.0
Q ss_pred CEEEEcCCChhHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 218 d~li~apTGsGKTl~~~ 234 (815)
.+|+.||.|+|||....
T Consensus 16 ~~L~~G~~G~gkt~~a~ 32 (188)
T TIGR00678 16 AYLFAGPEGVGKELLAL 32 (188)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999996543
No 472
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=80.77 E-value=9.5 Score=47.50 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.5
Q ss_pred CCEEEEcCCChhHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~ 234 (815)
.+.+++||+|+|||....
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 489999999999997654
No 473
>CHL00095 clpC Clp protease ATP binding subunit
Probab=80.65 E-value=7.2 Score=48.35 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=17.5
Q ss_pred CCCEEEEcCCChhHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~ 237 (815)
..+++++||+|.|||......+
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la 221 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLA 221 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHH
Confidence 3489999999999998765443
No 474
>PHA00012 I assembly protein
Probab=80.58 E-value=7.7 Score=41.80 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=28.0
Q ss_pred CcccEEEEeccccccc---cccCchHHHHHHHHHHHHHhcccceeEeeeccc
Q 036378 314 SLISLVVVDEAHCVSE---WSHNFRPSYMRLRASLLRARLNVECILAMTATA 362 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~---~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~ 362 (815)
..-+++||||||.... ||..-++.+... +...+.....++++|=.+
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~---l~~hRh~G~DvilITQ~p 128 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDW---FLHARKLGWDIIFIIQDI 128 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHH---HHHhccCCceEEEEcCCH
Confidence 3568999999999874 554344445443 222334455677766554
No 475
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=80.40 E-value=20 Score=40.34 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=15.5
Q ss_pred CCEEEEcCCChhHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp 236 (815)
+.+|+.||.|+|||......
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~l 56 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAF 56 (394)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 35889999999999655443
No 476
>PRK09354 recA recombinase A; Provisional
Probab=80.33 E-value=10 Score=41.64 Aligned_cols=45 Identities=13% Similarity=-0.007 Sum_probs=32.0
Q ss_pred CCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEcccHHHHHHHHHh
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLVALMIDQLRH 260 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~q~~~~ 260 (815)
|+-+.+.+|+|+|||...+..+ ...++.+++|....++-......
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~ 107 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKK 107 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHH
Confidence 5678899999999996543332 34578899998887776544433
No 477
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=80.31 E-value=6.7 Score=46.96 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=61.3
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
...+||.|+++.-+.+.+..|.+ ++....+++.+...+....++.++.|+++|||+|-- ....+. +.++++|
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv------~arGID-ip~V~~V 317 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDV------AARGLD-VERISLV 317 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcch------HhcCCC-cccCCEE
Confidence 46899999999999999999987 677888999999999999999999999999999931 122233 6678888
Q ss_pred EE
Q 036378 320 VV 321 (815)
Q Consensus 320 Vi 321 (815)
|.
T Consensus 318 I~ 319 (629)
T PRK11634 318 VN 319 (629)
T ss_pred EE
Confidence 75
No 478
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=80.15 E-value=5.3 Score=47.20 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=47.1
Q ss_pred HHHHhcCCceEEEEccccccccccCCccEEE--------EeCCCCCHHHHHHHHcccCCCCCC
Q 036378 465 QELFCSNKIRVVVATVAFGMGLDKRDVGAVI--------HYSLPESLEEYVQEIGRAGRDGRL 519 (815)
Q Consensus 465 ~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI--------~~d~P~s~~~y~Qr~GRaGR~g~~ 519 (815)
-++|+.|+-.|-|-..+++-||-+..-+-|+ -..+|+|..--+|.-||+.|..+-
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQV 912 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQV 912 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhccccccccc
Confidence 4679999999999999999999887555443 478999999999999999998763
No 479
>PRK06904 replicative DNA helicase; Validated
Probab=80.02 E-value=20 Score=41.40 Aligned_cols=111 Identities=9% Similarity=0.047 Sum_probs=54.9
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH----HcCCcEEEEcccHHHHHHHHHhcCC---Cceeeeec-c-CCChHHHHHHH---
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM----ILPGLTLVVCPLVALMIDQLRHLPP---VIHGGFLS-S-SQRPEEVAETI--- 283 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l----~~~~~~lVl~P~~~L~~q~~~~l~~---~~~~~~i~-~-~~~~~~~~~~~--- 283 (815)
|.=+++.|.||.|||...+-.+. ..+..+++++.- -=..|...++-. .+....+. . .+...++....
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~ 299 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTV 299 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHH
Confidence 44567789999999975432222 234556666543 334455555443 22222222 2 34455544332
Q ss_pred HHHhcCCceEEEe-----ChhhhhchhhhhhhhhcCcccEEEEeccccccc
Q 036378 284 RLIQVGAIKVLFV-----SPERFLNADFLSIFTATSLISLVVVDEAHCVSE 329 (815)
Q Consensus 284 ~~l~~g~~~Ili~-----TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~ 329 (815)
..+.. ...+.|- |+..+......- ......+++||||=.+.|..
T Consensus 300 ~~l~~-~~~l~I~d~~~~t~~~i~~~~r~~-~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 300 GMFKQ-KPNLYIDDSSGLTPTELRSRARRV-YRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHhc-CCCEEEECCCCCCHHHHHHHHHHH-HHhCCCCCEEEEecHHhcCC
Confidence 22322 2334442 333433222111 11123689999999988853
No 480
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=79.97 E-value=2.9 Score=39.32 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=42.3
Q ss_pred cCCCEEEEcCCChhHHHHHHHHHHHcC--CcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhc---C
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPAMILP--GLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQV---G 289 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~l~~~--~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~---g 289 (815)
.+..+++.|+.|+||+.+...-.-... ...+++.....+-.++.+....+.-...-...++........+.+.. .
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~ 99 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQERS 99 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCTTT
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcCCC
Confidence 467899999999999986543222221 12333323223334455554332211111122333344444444443 3
Q ss_pred CceEEEeChhhhhc
Q 036378 290 AIKVLFVSPERFLN 303 (815)
Q Consensus 290 ~~~Ili~TPe~L~~ 303 (815)
++++|++|-..+..
T Consensus 100 ~~RlI~ss~~~l~~ 113 (138)
T PF14532_consen 100 NVRLIASSSQDLEE 113 (138)
T ss_dssp TSEEEEEECC-CCC
T ss_pred CeEEEEEeCCCHHH
Confidence 57777777665544
No 481
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=79.89 E-value=1.2 Score=47.82 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH
Q 036378 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 199 ~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l 238 (815)
..--++.|..=+.++.+..-++.++|-|+|||......+.
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av 165 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAV 165 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHh
Confidence 3456789999999999999999999999999975544443
No 482
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.87 E-value=45 Score=34.78 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=25.0
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMID 256 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q 256 (815)
.+-+|+.+|.|+|||||.-.- ..+..-|.|=+=-.+|++.
T Consensus 211 pkgvllygppgtgktl~arav-anrtdacfirvigselvqk 250 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCARAV-ANRTDACFIRVIGSELVQK 250 (435)
T ss_pred CCceEEeCCCCCchhHHHHHH-hcccCceEEeehhHHHHHH
Confidence 467999999999999986432 2333334444444455443
No 483
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=79.79 E-value=13 Score=40.51 Aligned_cols=33 Identities=6% Similarity=0.017 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHH----cCC---CEEEEcCCChhHHHHHHH
Q 036378 203 RDGQLEAIKMVL----DKK---STMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 203 ~~~Q~~ai~~il----~g~---d~li~apTGsGKTl~~~l 235 (815)
.|+|..++..+. .|+ -.|+.||.|.||+..+..
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~ 43 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA 43 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH
Confidence 466666666554 444 467999999999965443
No 484
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=79.65 E-value=4.5 Score=47.29 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=43.8
Q ss_pred ceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccc-------cccCchHHHHHHHHHHHHHhcccceeEeeecccC
Q 036378 291 IKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSE-------WSHNFRPSYMRLRASLLRARLNVECILAMTATAT 363 (815)
Q Consensus 291 ~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~-------~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~ 363 (815)
+++.|+-+.+-.+.+|.+..... . +.++|||.|-+.. -||+.|..-+..+..-..-...+..|+.+.||--
T Consensus 220 VemfVGvGAsRVRdLF~qAkk~a-P-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNR 297 (596)
T COG0465 220 VEMFVGVGASRVRDLFEQAKKNA-P-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNR 297 (596)
T ss_pred hhhhcCCCcHHHHHHHHHhhccC-C-CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCC
Confidence 34555555555555555555422 2 7899999998864 2455554444331111111122347899999988
Q ss_pred hhHHH
Q 036378 364 TTTLR 368 (815)
Q Consensus 364 ~~~~~ 368 (815)
+++..
T Consensus 298 pdVlD 302 (596)
T COG0465 298 PDVLD 302 (596)
T ss_pred cccch
Confidence 88764
No 485
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=79.65 E-value=1.8 Score=47.78 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=19.5
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~ 239 (815)
.-++|+.+|||||||+..+-.|-.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ 249 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARV 249 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHH
Confidence 457999999999999987766543
No 486
>PTZ00293 thymidine kinase; Provisional
Probab=79.39 E-value=11 Score=38.19 Aligned_cols=36 Identities=11% Similarity=-0.032 Sum_probs=25.5
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLV 251 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~ 251 (815)
|+=.++.||.+||||.-.+--+. ..+..++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 55568899999999974443332 3477888888864
No 487
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=79.34 E-value=2.8 Score=44.41 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHc--CCCEEEEcCCChhHHHHH
Q 036378 203 RDGQLEAIKMVLD--KKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 203 ~~~Q~~ai~~il~--g~d~li~apTGsGKTl~~ 233 (815)
.+.|.+.+..++. +.-+++.++||||||...
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 4555666655543 335789999999999754
No 488
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=79.22 E-value=6 Score=46.19 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=61.1
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
..++||.+.|+..+......|.. ++++..+++.+...++...+..+++|..+|||+|--. ...+. ..++.+|
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva------aRGiD-i~~v~~V 345 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA------ARGLD-IPDVSHV 345 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh------hccCC-cccccee
Confidence 45699999999999999999987 6899999999999999999999999999999999532 22222 5566666
Q ss_pred E
Q 036378 320 V 320 (815)
Q Consensus 320 V 320 (815)
|
T Consensus 346 i 346 (513)
T COG0513 346 I 346 (513)
T ss_pred E
Confidence 4
No 489
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=79.00 E-value=1.6 Score=51.80 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=36.3
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHc-CCcEEEEcccHHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMIL-PGLTLVVCPLVALMIDQLR 259 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~-~~~~lVl~P~~~L~~q~~~ 259 (815)
.++++.||||||||..+.+|.+.. ++-++|+-|--|+..-...
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~ 255 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCE 255 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHH
Confidence 589999999999999999998665 7789999998888665443
No 490
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=78.92 E-value=6.3 Score=49.07 Aligned_cols=33 Identities=39% Similarity=0.438 Sum_probs=23.3
Q ss_pred HHHHHHHHHHc-------C--------CCEEEEcCCChhHHHHHHHHH
Q 036378 205 GQLEAIKMVLD-------K--------KSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 205 ~Q~~ai~~il~-------g--------~d~li~apTGsGKTl~~~lp~ 237 (815)
+|..|+..+.. | ..+++.||||+|||.+...-+
T Consensus 569 GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La 616 (852)
T TIGR03346 569 GQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALA 616 (852)
T ss_pred CChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 57777766542 1 247899999999998765544
No 491
>PRK05748 replicative DNA helicase; Provisional
Probab=78.86 E-value=26 Score=40.11 Aligned_cols=109 Identities=8% Similarity=0.026 Sum_probs=52.8
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH----HcCCcEEEEcccHHHHHHHHHhcCC---Cceeeee-ccCCChHHHHH---HHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM----ILPGLTLVVCPLVALMIDQLRHLPP---VIHGGFL-SSSQRPEEVAE---TIR 284 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l----~~~~~~lVl~P~~~L~~q~~~~l~~---~~~~~~i-~~~~~~~~~~~---~~~ 284 (815)
|.-+++.|+||.|||...+--+. ..+..+++++ +-.-..|...++.. .+....+ ...+...++.. ...
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fS-lEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~ 281 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFS-LEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMG 281 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEe-CCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHH
Confidence 45678889999999965443322 2245566654 33334444444422 2221111 22333344332 223
Q ss_pred HHhcCCceEEEe-Ch----hhhhchhhhhhhhhcCcccEEEEecccccc
Q 036378 285 LIQVGAIKVLFV-SP----ERFLNADFLSIFTATSLISLVVVDEAHCVS 328 (815)
Q Consensus 285 ~l~~g~~~Ili~-TP----e~L~~~~~~~~~~~~~~i~~lViDEaH~i~ 328 (815)
.+.. ..+.|- +| +.+...... ......++++||||=.|.+.
T Consensus 282 ~l~~--~~~~i~d~~~~ti~~i~~~~r~-~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 282 SLSD--APIYIDDTPGIKVTEIRARCRR-LAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHhc--CCEEEECCCCCCHHHHHHHHHH-HHHhcCCCCEEEEccchhcC
Confidence 3333 334443 33 333322111 11111268999999999885
No 492
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=78.86 E-value=16 Score=38.48 Aligned_cols=111 Identities=13% Similarity=0.016 Sum_probs=56.0
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---Hc-CCcEEEEccc---HHHHHHHHHhcCCCceeeeec-cCCChHHHHHH---HH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---IL-PGLTLVVCPL---VALMIDQLRHLPPVIHGGFLS-SSQRPEEVAET---IR 284 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~-~~~~lVl~P~---~~L~~q~~~~l~~~~~~~~i~-~~~~~~~~~~~---~~ 284 (815)
|.=+++.|.||.|||...+-.+. .. +..+++++.- .+++.-....+.. +....+. ..+...+.... ..
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~-v~~~~i~~g~l~~~e~~~~~~~~~ 97 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSG-VPYNKIRSGDLSDEEFERLQAAAE 97 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHT-STHHHHHCCGCHHHHHHHHHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhc-chhhhhhccccCHHHHHHHHHHHH
Confidence 44578889999999975543332 33 4667777763 3444443333322 2222222 22333333322 23
Q ss_pred HHhcCCceEEE-eChh----hhhchhhhhhhhhcCcccEEEEecccccccc
Q 036378 285 LIQVGAIKVLF-VSPE----RFLNADFLSIFTATSLISLVVVDEAHCVSEW 330 (815)
Q Consensus 285 ~l~~g~~~Ili-~TPe----~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~ 330 (815)
.+... .+.| .+|. .+.+....-... ..++++||||=.|.+...
T Consensus 98 ~l~~~--~l~i~~~~~~~~~~i~~~i~~~~~~-~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 98 KLSDL--PLYIEDTPSLTIDDIESKIRRLKRE-GKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHTS--EEEEEESSS-BHHHHHHHHHHHHHH-STTEEEEEEEEGGGSBTS
T ss_pred HHhhC--cEEEECCCCCCHHHHHHHHHHHHhh-ccCCCEEEechHHHhcCC
Confidence 34433 3443 3333 333222111111 267899999999998753
No 493
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=78.85 E-value=1.5 Score=35.10 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.4
Q ss_pred CCCEEEEcCCChhHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~ 233 (815)
|..+++.+++|+|||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999999754
No 494
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=78.83 E-value=3.5 Score=43.14 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=17.0
Q ss_pred HcCCCEEEEcCCChhHHHHH
Q 036378 214 LDKKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 214 l~g~d~li~apTGsGKTl~~ 233 (815)
-.|+.+++.+|.|+|||...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36889999999999999643
No 495
>PTZ00424 helicase 45; Provisional
Probab=78.80 E-value=3.9 Score=46.01 Aligned_cols=75 Identities=11% Similarity=0.110 Sum_probs=60.6
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
..++||.++++.-+....+.+.. .+....+++.+...++...++.++.|.++|||+|.- ....+. +..+++|
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~------l~~GiD-ip~v~~V 339 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDL------LARGID-VQQVSLV 339 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEccc------ccCCcC-cccCCEE
Confidence 46799999999999888888876 567888999999999999999999999999999941 122233 6678888
Q ss_pred EEe
Q 036378 320 VVD 322 (815)
Q Consensus 320 ViD 322 (815)
|.-
T Consensus 340 I~~ 342 (401)
T PTZ00424 340 INY 342 (401)
T ss_pred EEE
Confidence 753
No 496
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=78.78 E-value=2.1 Score=43.19 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=19.5
Q ss_pred EEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 036378 219 TMLVLPTGAGKSLCYQIPAMILPGLTLVV 247 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~l~~~~~~lVl 247 (815)
.++.||||+|||-.....+-..+..+|++
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~ 32 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISL 32 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEe
Confidence 57899999999987766666666655554
No 497
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=78.75 E-value=7.5 Score=42.25 Aligned_cols=35 Identities=9% Similarity=-0.077 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHH----cCC---CEEEEcCCChhHHHHHHHH
Q 036378 202 FRDGQLEAIKMVL----DKK---STMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 202 ~~~~Q~~ai~~il----~g~---d~li~apTGsGKTl~~~lp 236 (815)
+.|+|...+..+. .++ -.|+.||.|.||+..+...
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~ 45 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELF 45 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHH
Confidence 4577777766655 344 5789999999999654433
No 498
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=78.73 E-value=15 Score=39.58 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=15.5
Q ss_pred CEEEEcCCChhHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp 236 (815)
.+++.||.|+|||.+...-
T Consensus 40 ~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999765443
No 499
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=78.72 E-value=1.6 Score=51.99 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=36.6
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHc-CCcEEEEcccHHHHHHHHHh
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMIL-PGLTLVVCPLVALMIDQLRH 260 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~-~~~~lVl~P~~~L~~q~~~~ 260 (815)
..++++.||||+|||..+.+|.+.. ++-++|+=|--|+..-....
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~ 269 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEH 269 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHH
Confidence 4589999999999999999998765 77788888988886544443
No 500
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=78.55 E-value=4.2 Score=27.85 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=24.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCcE
Q 036378 647 IPTVANSIGATTIDVSNQLLNLKMRGEI 674 (815)
Q Consensus 647 ~~~~a~~~g~~~~~v~~~l~~l~~~g~i 674 (815)
-.++|..+|.+++-|-+.|..|.++|+|
T Consensus 5 r~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 5 RQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 3579999999999999999999999986
Done!