Query 036378
Match_columns 815
No_of_seqs 604 out of 4057
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 20:52:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oyw_A RECQ helicase, ATP-depe 100.0 1.5E-63 5.2E-68 576.9 47.9 348 166-537 3-351 (523)
2 2v1x_A ATP-dependent DNA helic 100.0 1.5E-62 5E-67 574.3 44.3 348 168-534 24-379 (591)
3 2db3_A ATP-dependent RNA helic 100.0 1.1E-50 3.8E-55 460.1 36.0 340 164-533 55-412 (434)
4 3i5x_A ATP-dependent RNA helic 100.0 2.2E-50 7.4E-55 473.4 35.3 356 166-538 69-458 (563)
5 3sqw_A ATP-dependent RNA helic 100.0 1.1E-49 3.6E-54 468.6 34.7 351 172-539 28-408 (579)
6 2i4i_A ATP-dependent RNA helic 100.0 1.3E-49 4.5E-54 448.7 29.1 348 164-538 14-392 (417)
7 2j0s_A ATP-dependent RNA helic 100.0 3.3E-48 1.1E-52 436.5 35.8 344 164-537 36-391 (410)
8 3eiq_A Eukaryotic initiation f 100.0 1.8E-48 6.2E-53 438.8 29.9 348 165-538 40-396 (414)
9 1s2m_A Putative ATP-dependent 100.0 7.1E-48 2.4E-52 432.2 34.5 344 164-538 20-374 (400)
10 1xti_A Probable ATP-dependent 100.0 1.5E-47 5E-52 428.0 35.1 337 165-530 8-358 (391)
11 3pey_A ATP-dependent RNA helic 100.0 1.2E-46 4.3E-51 420.4 36.1 334 165-531 5-358 (395)
12 1hv8_A Putative ATP-dependent 100.0 6.2E-46 2.1E-50 410.6 37.7 338 165-538 6-354 (367)
13 3fht_A ATP-dependent RNA helic 100.0 3.6E-46 1.2E-50 419.6 35.8 342 164-536 24-387 (412)
14 1fuu_A Yeast initiation factor 100.0 1.3E-47 4.6E-52 428.6 19.7 343 165-538 21-375 (394)
15 2z0m_A 337AA long hypothetical 100.0 1.6E-45 5.6E-50 402.5 34.2 315 197-538 12-331 (337)
16 3oiy_A Reverse gyrase helicase 100.0 2.4E-45 8.3E-50 414.0 30.9 322 188-535 9-369 (414)
17 3fmp_B ATP-dependent RNA helic 100.0 1.5E-46 5.3E-51 431.9 15.3 341 164-535 91-453 (479)
18 3fho_A ATP-dependent RNA helic 100.0 5E-44 1.7E-48 413.2 12.3 332 168-529 122-470 (508)
19 2p6r_A Afuhel308 helicase; pro 100.0 1.8E-41 6.3E-46 407.3 30.6 337 166-534 2-393 (702)
20 2va8_A SSO2462, SKI2-type heli 100.0 2E-40 6.8E-45 399.4 35.5 330 165-530 8-409 (715)
21 4a2p_A RIG-I, retinoic acid in 100.0 2.2E-41 7.7E-46 395.8 25.9 327 197-534 3-513 (556)
22 2zj8_A DNA helicase, putative 100.0 7.3E-41 2.5E-45 403.2 29.4 333 166-533 2-391 (720)
23 3l9o_A ATP-dependent RNA helic 100.0 3.8E-41 1.3E-45 417.2 26.5 322 198-539 181-608 (1108)
24 2ykg_A Probable ATP-dependent 100.0 4.4E-41 1.5E-45 404.4 25.9 328 197-535 9-522 (696)
25 4ddu_A Reverse gyrase; topoiso 100.0 3.3E-40 1.1E-44 408.7 31.8 290 188-501 66-388 (1104)
26 4a4z_A Antiviral helicase SKI2 100.0 2.5E-40 8.6E-45 406.6 29.8 321 197-539 36-504 (997)
27 4gl2_A Interferon-induced heli 100.0 6.7E-41 2.3E-45 403.0 22.4 322 200-529 6-519 (699)
28 3tbk_A RIG-I helicase domain; 100.0 4.4E-40 1.5E-44 384.5 26.9 323 201-534 4-512 (555)
29 4a2q_A RIG-I, retinoic acid in 100.0 9.3E-40 3.2E-44 397.5 26.5 327 196-533 243-753 (797)
30 2xgj_A ATP-dependent RNA helic 100.0 4.2E-39 1.4E-43 395.7 32.4 322 197-539 83-510 (1010)
31 1gm5_A RECG; helicase, replica 100.0 6.2E-40 2.1E-44 391.1 19.9 314 189-529 357-697 (780)
32 1wp9_A ATP-dependent RNA helic 100.0 4.3E-38 1.5E-42 360.2 31.6 319 201-533 9-479 (494)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 1.2E-39 4.2E-44 404.0 18.9 279 191-500 48-352 (1054)
34 4a2w_A RIG-I, retinoic acid in 100.0 5.6E-39 1.9E-43 394.9 24.1 327 196-533 243-753 (936)
35 1tf5_A Preprotein translocase 100.0 1.1E-37 3.9E-42 364.2 26.6 324 191-530 74-546 (844)
36 2eyq_A TRCF, transcription-rep 100.0 3.7E-37 1.3E-41 383.9 32.4 314 189-530 592-923 (1151)
37 4f92_B U5 small nuclear ribonu 100.0 7.8E-38 2.7E-42 400.3 27.0 334 197-542 922-1321(1724)
38 2oca_A DAR protein, ATP-depend 100.0 2.7E-36 9.2E-41 349.4 24.3 307 199-527 111-453 (510)
39 4f92_B U5 small nuclear ribonu 100.0 1.7E-36 5.7E-41 388.0 24.5 330 198-540 76-484 (1724)
40 2jlq_A Serine protease subunit 100.0 9.6E-37 3.3E-41 346.8 19.3 283 198-528 1-310 (451)
41 2wv9_A Flavivirin protease NS2 100.0 1.6E-36 5.6E-41 357.6 15.5 283 201-536 215-543 (673)
42 2xau_A PRE-mRNA-splicing facto 100.0 8E-36 2.7E-40 358.1 21.6 327 165-531 72-445 (773)
43 2fsf_A Preprotein translocase 100.0 2.4E-35 8.1E-40 343.6 24.4 329 191-530 65-584 (853)
44 1nkt_A Preprotein translocase 100.0 1.3E-34 4.5E-39 337.5 29.8 330 190-531 101-619 (922)
45 2fwr_A DNA repair protein RAD2 100.0 1.2E-35 4E-40 340.7 19.9 296 201-529 93-454 (472)
46 2whx_A Serine protease/ntpase/ 100.0 4.1E-36 1.4E-40 352.1 15.8 293 199-537 169-489 (618)
47 3o8b_A HCV NS3 protease/helica 100.0 4.4E-36 1.5E-40 348.6 15.8 274 202-532 218-517 (666)
48 1yks_A Genome polyprotein [con 100.0 8.8E-36 3E-40 337.4 17.4 271 213-536 5-309 (440)
49 2z83_A Helicase/nucleoside tri 100.0 6.2E-35 2.1E-39 332.4 12.9 274 210-529 15-313 (459)
50 2v6i_A RNA helicase; membrane, 100.0 1.7E-33 5.8E-38 318.0 22.3 267 215-527 1-288 (431)
51 3rc3_A ATP-dependent RNA helic 100.0 1E-32 3.5E-37 324.3 27.4 283 210-538 149-453 (677)
52 3h1t_A Type I site-specific re 100.0 1.7E-32 5.8E-37 323.1 26.3 298 200-518 177-545 (590)
53 3dmq_A RNA polymerase-associat 100.0 4.6E-32 1.6E-36 333.9 22.0 317 200-526 152-610 (968)
54 1z63_A Helicase of the SNF2/RA 100.0 5.2E-30 1.8E-34 295.9 20.4 307 200-529 36-453 (500)
55 3jux_A Protein translocase sub 100.0 6.1E-28 2.1E-32 275.5 32.2 320 190-531 65-589 (822)
56 1z3i_X Similar to RAD54-like; 100.0 7.8E-27 2.7E-31 276.4 33.4 315 201-529 55-528 (644)
57 3fe2_A Probable ATP-dependent 100.0 4.5E-28 1.5E-32 252.3 19.9 190 163-377 27-232 (242)
58 1c4o_A DNA nucleotide excision 100.0 3.5E-27 1.2E-31 279.2 29.8 209 315-537 325-558 (664)
59 3iuy_A Probable ATP-dependent 100.0 2.9E-28 9.9E-33 251.3 16.7 189 164-377 18-223 (228)
60 3mwy_W Chromo domain-containin 100.0 1.6E-27 5.3E-32 289.3 22.6 317 200-529 235-684 (800)
61 3bor_A Human initiation factor 100.0 1.2E-27 4E-32 248.4 17.3 192 165-377 30-229 (237)
62 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 2.9E-27 1E-31 289.0 22.9 327 185-528 249-708 (1038)
63 3ly5_A ATP-dependent RNA helic 99.9 1.2E-27 4.2E-32 252.1 16.8 188 165-376 52-256 (262)
64 1vec_A ATP-dependent RNA helic 99.9 2.5E-27 8.4E-32 240.2 17.1 188 165-377 3-202 (206)
65 1q0u_A Bstdead; DEAD protein, 99.9 1.3E-27 4.3E-32 245.0 14.1 189 165-378 4-207 (219)
66 3ber_A Probable ATP-dependent 99.9 1E-26 3.6E-31 243.0 19.8 190 164-377 42-242 (249)
67 2oxc_A Probable ATP-dependent 99.9 9.6E-27 3.3E-31 240.4 17.8 187 164-375 23-221 (230)
68 3dkp_A Probable ATP-dependent 99.9 5E-27 1.7E-31 244.8 15.7 196 165-377 25-235 (245)
69 2gxq_A Heat resistant RNA depe 99.9 7.2E-27 2.5E-31 236.8 16.4 187 166-377 2-200 (207)
70 1t6n_A Probable ATP-dependent 99.9 4.5E-27 1.5E-31 240.9 15.0 189 165-376 14-214 (220)
71 2pl3_A Probable ATP-dependent 99.9 1.7E-26 6E-31 239.3 18.5 188 164-376 24-226 (236)
72 2d7d_A Uvrabc system protein B 99.9 4.3E-25 1.5E-29 261.1 30.9 116 421-537 444-564 (661)
73 1qde_A EIF4A, translation init 99.9 1.3E-26 4.3E-31 238.3 15.4 187 165-377 14-211 (224)
74 3fmo_B ATP-dependent RNA helic 99.9 1.7E-26 5.7E-31 248.0 16.2 189 163-378 90-293 (300)
75 1wrb_A DJVLGB; RNA helicase, D 99.9 5.1E-27 1.8E-31 246.0 11.1 190 165-377 23-234 (253)
76 2hjv_A ATP-dependent RNA helic 99.9 8.8E-24 3E-28 206.0 19.2 147 386-538 5-151 (163)
77 2ipc_A Preprotein translocase 99.9 2.9E-22 9.9E-27 232.9 31.7 130 190-328 69-215 (997)
78 2rb4_A ATP-dependent RNA helic 99.9 5.1E-23 1.8E-27 203.0 18.8 144 389-537 6-155 (175)
79 3eaq_A Heat resistant RNA depe 99.9 2.9E-23 9.8E-28 211.3 17.0 128 410-537 19-146 (212)
80 1t5i_A C_terminal domain of A 99.9 5.3E-23 1.8E-27 202.3 17.1 128 410-537 19-147 (172)
81 2jgn_A DBX, DDX3, ATP-dependen 99.9 7.6E-23 2.6E-27 203.5 16.2 146 387-538 16-162 (185)
82 1fuk_A Eukaryotic initiation f 99.9 5.8E-23 2E-27 200.6 14.3 129 410-538 18-146 (165)
83 2p6n_A ATP-dependent RNA helic 99.9 3.3E-22 1.1E-26 199.9 16.8 142 388-536 27-169 (191)
84 3i32_A Heat resistant RNA depe 99.9 3.3E-22 1.1E-26 213.3 15.5 129 410-538 16-144 (300)
85 2vl7_A XPD; helicase, unknown 99.9 3.2E-20 1.1E-24 215.2 26.2 132 197-329 4-189 (540)
86 2yjt_D ATP-dependent RNA helic 99.8 2.6E-23 8.9E-28 204.1 0.0 126 413-538 21-146 (170)
87 3b6e_A Interferon-induced heli 99.8 6.5E-20 2.2E-24 186.5 11.2 160 197-361 29-216 (216)
88 3crv_A XPD/RAD3 related DNA he 99.8 3.5E-17 1.2E-21 190.3 34.7 316 201-528 3-530 (551)
89 3llm_A ATP-dependent RNA helic 99.7 6.5E-18 2.2E-22 174.7 9.5 167 189-375 50-228 (235)
90 1rif_A DAR protein, DNA helica 99.7 1.2E-17 4.1E-22 177.6 10.9 146 200-366 112-266 (282)
91 2fz4_A DNA repair protein RAD2 99.7 1.3E-16 4.5E-21 164.9 14.6 139 200-366 92-232 (237)
92 4a15_A XPD helicase, ATP-depen 99.6 1E-14 3.5E-19 171.0 25.8 167 354-528 377-583 (620)
93 1z5z_A Helicase of the SNF2/RA 99.6 4.2E-16 1.4E-20 164.1 10.3 121 410-530 98-225 (271)
94 1w36_D RECD, exodeoxyribonucle 98.5 3.3E-07 1.1E-11 107.2 11.5 76 188-263 136-218 (608)
95 4b3f_X DNA-binding protein smu 97.8 6.7E-05 2.3E-09 88.5 11.8 63 201-263 189-255 (646)
96 2gk6_A Regulator of nonsense t 97.8 0.00025 8.5E-09 83.2 15.5 65 199-263 178-246 (624)
97 3upu_A ATP-dependent DNA helic 97.6 0.00013 4.5E-09 82.3 10.3 65 197-261 21-94 (459)
98 2xzl_A ATP-dependent helicase 97.6 0.00028 9.5E-09 84.8 13.2 65 199-263 358-426 (802)
99 3e1s_A Exodeoxyribonuclease V, 97.6 0.00017 5.9E-09 83.4 10.4 61 201-261 189-252 (574)
100 2wjy_A Regulator of nonsense t 97.5 0.00054 1.8E-08 82.2 14.2 64 200-263 355-422 (800)
101 3lfu_A DNA helicase II; SF1 he 97.2 0.012 4E-07 69.2 19.7 62 200-263 8-76 (647)
102 3ec2_A DNA replication protein 96.6 0.0088 3E-07 57.7 10.6 31 204-234 17-56 (180)
103 2o0j_A Terminase, DNA packagin 96.4 0.024 8.2E-07 61.7 13.4 63 201-263 163-230 (385)
104 3vfd_A Spastin; ATPase, microt 96.3 0.036 1.2E-06 60.7 14.0 32 216-247 148-179 (389)
105 3cpe_A Terminase, DNA packagin 96.2 0.014 4.8E-07 67.8 10.8 63 201-263 163-230 (592)
106 3hgt_A HDA1 complex subunit 3; 96.2 0.081 2.8E-06 55.7 15.1 113 421-538 124-246 (328)
107 2zpa_A Uncharacterized protein 95.9 0.012 4.2E-07 68.1 8.2 114 201-364 175-290 (671)
108 3te6_A Regulatory protein SIR3 95.8 0.08 2.7E-06 56.0 13.4 19 216-234 45-63 (318)
109 3bos_A Putative DNA replicatio 95.8 0.048 1.6E-06 54.7 11.3 19 216-234 52-70 (242)
110 1t5i_A C_terminal domain of A 94.9 0.16 5.5E-06 48.5 11.0 123 241-377 31-154 (172)
111 1l8q_A Chromosomal replication 94.7 0.076 2.6E-06 56.4 8.9 21 216-236 37-57 (324)
112 3h4m_A Proteasome-activating n 94.6 0.35 1.2E-05 49.9 13.8 31 216-246 51-81 (285)
113 3vkw_A Replicase large subunit 94.6 0.075 2.6E-06 58.6 8.7 44 218-263 163-206 (446)
114 3syl_A Protein CBBX; photosynt 94.4 0.16 5.6E-06 53.2 10.6 20 216-235 67-86 (309)
115 2w58_A DNAI, primosome compone 94.3 0.13 4.4E-06 50.3 8.9 18 217-234 55-72 (202)
116 2p6n_A ATP-dependent RNA helic 94.2 0.43 1.5E-05 46.4 12.5 134 226-374 39-174 (191)
117 2hjv_A ATP-dependent RNA helic 94.1 0.23 8E-06 46.8 10.1 123 240-377 34-157 (163)
118 2orw_A Thymidine kinase; TMTK, 94.1 0.2 6.8E-06 48.5 9.7 36 216-251 3-41 (184)
119 2kjq_A DNAA-related protein; s 94.0 0.043 1.5E-06 51.3 4.6 20 215-234 35-54 (149)
120 3kl4_A SRP54, signal recogniti 93.9 0.34 1.2E-05 53.4 12.3 24 647-670 401-424 (433)
121 1oyw_A RECQ helicase, ATP-depe 93.9 7.8E-05 2.7E-09 85.6 -17.8 343 422-805 65-447 (523)
122 3co5_A Putative two-component 93.8 0.1 3.4E-06 48.2 6.7 19 215-233 26-44 (143)
123 2xvc_A ESCRT-III, SSO0910; cel 93.7 0.1 3.4E-06 39.1 4.9 33 645-677 26-58 (59)
124 1d2n_A N-ethylmaleimide-sensit 93.3 0.29 1E-05 50.3 9.9 27 217-243 65-91 (272)
125 2z4s_A Chromosomal replication 93.2 0.44 1.5E-05 52.9 11.9 21 216-236 130-150 (440)
126 3n70_A Transport activator; si 93.2 0.14 4.6E-06 47.4 6.5 22 215-236 23-44 (145)
127 2qgz_A Helicase loader, putati 93.2 0.21 7E-06 52.8 8.6 19 216-234 152-170 (308)
128 1xx6_A Thymidine kinase; NESG, 93.1 0.26 8.8E-06 48.1 8.6 36 216-251 8-46 (191)
129 2b8t_A Thymidine kinase; deoxy 93.1 0.1 3.5E-06 52.2 5.8 36 216-251 12-50 (223)
130 3eie_A Vacuolar protein sortin 93.0 0.19 6.5E-06 53.3 8.2 30 216-245 51-80 (322)
131 2v1u_A Cell division control p 92.9 0.47 1.6E-05 51.0 11.4 21 657-677 331-351 (387)
132 4b4t_J 26S protease regulatory 92.8 0.91 3.1E-05 49.4 13.1 69 164-247 144-213 (405)
133 3cf0_A Transitional endoplasmi 92.7 1.4 4.6E-05 46.1 14.2 26 216-241 49-74 (301)
134 1fnn_A CDC6P, cell division co 92.7 0.27 9.4E-06 53.1 9.1 23 656-678 330-352 (389)
135 3t15_A Ribulose bisphosphate c 92.5 0.38 1.3E-05 50.3 9.4 31 217-247 37-67 (293)
136 1lv7_A FTSH; alpha/beta domain 92.5 1.2 4.3E-05 45.0 13.2 26 216-241 45-70 (257)
137 3pfi_A Holliday junction ATP-d 92.4 0.82 2.8E-05 48.4 12.3 34 644-677 279-313 (338)
138 2rb4_A ATP-dependent RNA helic 92.4 0.84 2.9E-05 43.3 11.1 125 241-377 34-162 (175)
139 1xwi_A SKD1 protein; VPS4B, AA 92.3 0.66 2.3E-05 49.1 11.3 25 216-240 45-69 (322)
140 2qby_A CDC6 homolog 1, cell di 92.3 0.63 2.2E-05 50.0 11.4 30 648-677 316-348 (386)
141 1gm5_A RECG; helicase, replica 92.3 0.37 1.3E-05 57.4 10.1 78 421-498 416-498 (780)
142 3hu3_A Transitional endoplasmi 92.3 1 3.5E-05 50.6 13.3 27 216-242 238-264 (489)
143 1sxj_A Activator 1 95 kDa subu 92.3 0.44 1.5E-05 54.1 10.3 31 217-247 78-108 (516)
144 2qp9_X Vacuolar protein sortin 92.3 0.69 2.3E-05 49.7 11.4 30 216-245 84-113 (355)
145 3pvs_A Replication-associated 92.2 0.34 1.2E-05 53.9 9.2 23 218-240 52-74 (447)
146 2r2a_A Uncharacterized protein 92.0 0.083 2.8E-06 52.0 3.4 18 218-235 7-24 (199)
147 3dm5_A SRP54, signal recogniti 91.9 1 3.4E-05 49.8 12.3 24 647-670 398-421 (443)
148 2j9r_A Thymidine kinase; TK1, 91.8 0.48 1.6E-05 46.8 8.6 37 216-252 28-67 (214)
149 3b9p_A CG5977-PA, isoform A; A 91.8 0.44 1.5E-05 49.6 8.9 26 216-241 54-79 (297)
150 2qz4_A Paraplegin; AAA+, SPG7, 91.7 0.49 1.7E-05 48.0 9.1 30 216-245 39-68 (262)
151 2chg_A Replication factor C sm 91.6 2.2 7.4E-05 41.4 13.5 17 217-233 39-55 (226)
152 4b4t_L 26S protease subunit RP 91.6 1.2 4.1E-05 49.1 12.4 70 164-247 177-246 (437)
153 3hjh_A Transcription-repair-co 91.4 0.43 1.5E-05 53.5 8.8 90 216-305 14-117 (483)
154 3u61_B DNA polymerase accessor 91.3 0.71 2.4E-05 48.7 10.2 14 315-328 105-118 (324)
155 4b4t_K 26S protease regulatory 91.0 1.8 6E-05 47.7 12.9 70 164-247 168-237 (428)
156 4b4t_H 26S protease regulatory 90.9 0.63 2.1E-05 51.5 9.3 64 164-242 205-269 (467)
157 3d8b_A Fidgetin-like protein 1 90.9 0.58 2E-05 50.3 9.0 32 216-247 117-148 (357)
158 1uaa_A REP helicase, protein ( 90.9 0.17 5.8E-06 59.6 5.1 61 201-263 2-69 (673)
159 3eaq_A Heat resistant RNA depe 90.8 1.5 5.3E-05 43.1 11.3 76 239-321 29-105 (212)
160 1xti_A Probable ATP-dependent 90.8 0.39 1.3E-05 51.9 7.6 124 240-377 249-373 (391)
161 4b4t_I 26S protease regulatory 90.8 0.71 2.4E-05 50.5 9.4 68 164-246 178-246 (437)
162 3e2i_A Thymidine kinase; Zn-bi 90.8 0.78 2.7E-05 45.3 8.9 37 216-252 28-67 (219)
163 2p65_A Hypothetical protein PF 90.7 0.47 1.6E-05 44.9 7.4 19 216-234 43-61 (187)
164 1pjr_A PCRA; DNA repair, DNA r 90.5 0.27 9.3E-06 58.4 6.4 62 200-263 10-78 (724)
165 2zan_A Vacuolar protein sortin 90.4 0.41 1.4E-05 53.3 7.4 25 216-240 167-191 (444)
166 1fuk_A Eukaryotic initiation f 90.3 0.62 2.1E-05 43.8 7.6 77 240-323 29-106 (165)
167 1a5t_A Delta prime, HOLB; zinc 90.3 1.2 4.1E-05 47.3 10.7 34 203-236 4-44 (334)
168 2ce7_A Cell division protein F 90.0 1.9 6.4E-05 48.2 12.3 22 217-238 50-71 (476)
169 2qby_B CDC6 homolog 3, cell di 89.6 1.2 4E-05 48.0 10.1 31 647-677 306-339 (384)
170 1jbk_A CLPB protein; beta barr 89.6 1.5 5.2E-05 41.3 9.9 19 216-234 43-61 (195)
171 2jgn_A DBX, DDX3, ATP-dependen 89.5 0.76 2.6E-05 44.3 7.7 88 226-321 29-120 (185)
172 2r6a_A DNAB helicase, replicat 89.2 2.2 7.6E-05 47.4 12.3 109 216-329 203-327 (454)
173 1hqc_A RUVB; extended AAA-ATPa 89.0 1.8 6.2E-05 45.3 10.9 46 627-676 251-297 (324)
174 1njg_A DNA polymerase III subu 89.0 1.4 4.8E-05 43.4 9.5 16 218-233 47-62 (250)
175 3fht_A ATP-dependent RNA helic 89.0 0.96 3.3E-05 49.0 8.9 129 240-376 265-394 (412)
176 3u4q_A ATP-dependent helicase/ 88.9 0.33 1.1E-05 61.2 5.7 119 200-325 9-137 (1232)
177 3pey_A ATP-dependent RNA helic 88.7 0.96 3.3E-05 48.6 8.7 127 241-375 243-370 (395)
178 2db3_A ATP-dependent RNA helic 88.5 2.3 7.8E-05 46.9 11.7 122 240-375 299-421 (434)
179 3i32_A Heat resistant RNA depe 88.4 1.6 5.4E-05 45.6 9.7 123 239-376 26-149 (300)
180 2cvh_A DNA repair and recombin 87.9 1.5 5.1E-05 42.9 8.8 33 216-248 20-52 (220)
181 1cr0_A DNA primase/helicase; R 87.9 2.7 9.3E-05 43.5 11.2 35 215-249 34-72 (296)
182 2q6t_A DNAB replication FORK h 87.7 3.8 0.00013 45.3 12.8 109 216-329 200-324 (444)
183 1w4r_A Thymidine kinase; type 87.7 0.28 9.5E-06 47.8 3.0 35 216-250 20-57 (195)
184 1hv8_A Putative ATP-dependent 87.7 2.1 7.3E-05 45.2 10.5 123 240-377 237-360 (367)
185 1vma_A Cell division protein F 87.6 2.7 9.3E-05 44.0 10.9 32 217-248 105-139 (306)
186 3oiy_A Reverse gyrase helicase 87.6 1.3 4.5E-05 48.3 8.9 77 420-496 62-145 (414)
187 2orv_A Thymidine kinase; TP4A 87.1 0.98 3.4E-05 45.1 6.7 36 216-251 19-57 (234)
188 3e70_C DPA, signal recognition 86.9 1.8 6.1E-05 45.9 9.1 52 315-371 211-262 (328)
189 2j0s_A ATP-dependent RNA helic 86.6 2.5 8.5E-05 45.8 10.5 123 240-377 275-398 (410)
190 2z0m_A 337AA long hypothetical 86.6 2.4 8.3E-05 44.3 10.0 114 240-372 219-332 (337)
191 2gno_A DNA polymerase III, gam 86.4 3.9 0.00013 42.8 11.3 18 218-235 20-37 (305)
192 1lva_A Selenocysteine-specific 86.0 5.4 0.00019 40.5 11.9 120 548-680 71-193 (258)
193 1w5s_A Origin recognition comp 85.8 2.1 7.2E-05 46.4 9.4 29 649-677 339-371 (412)
194 1g5t_A COB(I)alamin adenosyltr 85.7 2 6.8E-05 41.8 7.9 35 216-250 28-65 (196)
195 1sxj_D Activator 1 41 kDa subu 85.5 4.7 0.00016 42.5 11.8 18 217-234 59-76 (353)
196 1ls1_A Signal recognition part 85.3 6.6 0.00022 40.7 12.4 33 216-248 98-133 (295)
197 2d7d_A Uvrabc system protein B 85.3 3.6 0.00012 48.0 11.4 81 240-327 444-525 (661)
198 1s2m_A Putative ATP-dependent 84.9 2.1 7E-05 46.3 8.7 122 241-377 258-380 (400)
199 1c4o_A DNA nucleotide excision 84.8 5.2 0.00018 46.7 12.5 81 240-327 438-519 (664)
200 2w0m_A SSO2452; RECA, SSPF, un 84.8 9.7 0.00033 37.1 13.0 34 215-248 22-58 (235)
201 2qen_A Walker-type ATPase; unk 84.5 13 0.00045 38.8 14.7 19 216-234 31-49 (350)
202 4ddu_A Reverse gyrase; topoiso 84.3 2 7E-05 53.2 9.1 79 420-498 119-204 (1104)
203 1oyi_A Double-stranded RNA-bin 84.1 0.9 3.1E-05 37.4 3.9 41 645-685 31-71 (82)
204 2v1x_A ATP-dependent DNA helic 83.6 4.3 0.00015 46.7 10.9 74 241-321 267-341 (591)
205 2i4i_A ATP-dependent RNA helic 83.6 2.1 7.3E-05 46.4 8.1 74 241-321 276-350 (417)
206 2px0_A Flagellar biosynthesis 82.8 5 0.00017 41.7 10.1 20 216-235 105-124 (296)
207 1jr3_A DNA polymerase III subu 82.8 4.6 0.00016 43.0 10.2 19 218-236 40-58 (373)
208 1iqp_A RFCS; clamp loader, ext 82.7 4.4 0.00015 42.1 9.8 17 218-234 48-64 (327)
209 2yjt_D ATP-dependent RNA helic 83.3 0.25 8.6E-06 46.9 0.0 75 241-322 30-105 (170)
210 3sqw_A ATP-dependent RNA helic 82.5 2.4 8.1E-05 48.7 8.3 119 241-374 288-410 (579)
211 2yhs_A FTSY, cell division pro 82.5 6.1 0.00021 44.1 11.0 32 216-247 293-327 (503)
212 2p4r_T E3 ubiquitin-protein li 82.3 1 3.4E-05 27.8 2.5 18 13-30 5-22 (26)
213 2eyq_A TRCF, transcription-rep 82.3 3.5 0.00012 51.4 10.1 77 420-496 650-731 (1151)
214 3eiq_A Eukaryotic initiation f 82.3 1.7 5.8E-05 47.1 6.6 121 241-376 280-401 (414)
215 2b0l_A GTP-sensing transcripti 82.3 6 0.00021 33.9 8.7 48 629-678 30-77 (102)
216 2oqg_A Possible transcriptiona 82.0 13 0.00046 31.8 11.3 43 645-687 35-77 (114)
217 2v79_A DNA replication protein 81.8 2.5 8.4E-05 38.5 6.4 37 641-677 48-84 (135)
218 1n0w_A DNA repair protein RAD5 81.7 11 0.00039 37.0 12.1 24 215-238 23-46 (243)
219 3i5x_A ATP-dependent RNA helic 81.4 2.8 9.5E-05 47.8 8.3 120 241-375 339-462 (563)
220 2iut_A DNA translocase FTSK; n 81.4 6.4 0.00022 44.7 10.9 21 216-236 214-234 (574)
221 2vn2_A DNAD, chromosome replic 81.3 3 0.0001 37.5 6.8 48 628-677 37-84 (128)
222 1nlf_A Regulatory protein REPA 81.1 11 0.00039 38.3 12.1 21 214-234 28-48 (279)
223 3pxi_A Negative regulator of g 81.0 2.1 7.3E-05 50.9 7.3 19 218-236 523-541 (758)
224 2zr9_A Protein RECA, recombina 81.0 3.6 0.00012 43.9 8.4 35 216-250 61-98 (349)
225 3cf2_A TER ATPase, transitiona 80.9 3.3 0.00011 49.2 8.7 20 216-235 238-257 (806)
226 1sxj_B Activator 1 37 kDa subu 80.5 5.8 0.0002 41.1 9.8 17 218-234 44-60 (323)
227 1qgp_A Protein (double strande 80.3 3.3 0.00011 33.5 6.0 37 645-681 32-68 (77)
228 4b4t_M 26S protease regulatory 80.2 2.3 8E-05 46.7 6.7 70 163-247 176-246 (434)
229 3cmu_A Protein RECA, recombina 79.8 7.3 0.00025 50.8 11.8 44 210-253 1415-1467(2050)
230 3cf2_A TER ATPase, transitiona 79.4 4.7 0.00016 47.9 9.3 26 217-242 512-537 (806)
231 1sxj_E Activator 1 40 kDa subu 78.7 11 0.00038 39.7 11.5 19 218-236 38-56 (354)
232 1qbj_A Protein (double-strande 78.5 3.8 0.00013 33.6 5.9 37 645-681 28-64 (81)
233 1qvr_A CLPB protein; coiled co 78.4 3.6 0.00012 49.7 8.2 21 216-236 191-211 (854)
234 1sfu_A 34L protein; protein/Z- 78.2 3.6 0.00012 33.0 5.3 38 645-682 30-67 (75)
235 3ber_A Probable ATP-dependent 77.8 14 0.00048 36.9 11.4 57 421-481 110-170 (249)
236 3io5_A Recombination and repai 77.8 3.8 0.00013 43.0 7.0 38 218-255 30-72 (333)
237 1xp8_A RECA protein, recombina 77.8 4.9 0.00017 43.2 8.2 36 216-251 74-112 (366)
238 1t6n_A Probable ATP-dependent 77.6 12 0.0004 36.4 10.5 72 422-496 82-164 (220)
239 2ffh_A Protein (FFH); SRP54, s 77.5 27 0.00092 38.1 14.1 24 647-670 385-408 (425)
240 1ypw_A Transitional endoplasmi 77.5 3.4 0.00012 49.4 7.5 22 216-237 238-259 (806)
241 2oca_A DAR protein, ATP-depend 77.2 7.6 0.00026 43.4 10.1 106 241-359 347-453 (510)
242 1r6b_X CLPA protein; AAA+, N-t 76.7 4.8 0.00016 47.8 8.6 19 216-234 207-225 (758)
243 2og2_A Putative signal recogni 76.1 11 0.00036 40.4 10.1 33 216-248 157-192 (359)
244 2kko_A Possible transcriptiona 75.9 8.9 0.0003 33.0 7.9 43 645-687 39-81 (108)
245 3df8_A Possible HXLR family tr 75.1 7 0.00024 33.9 7.1 59 645-704 43-102 (111)
246 3b9q_A Chloroplast SRP recepto 75.0 8.8 0.0003 39.9 9.1 33 216-248 100-135 (302)
247 3hws_A ATP-dependent CLP prote 74.8 7.2 0.00025 41.6 8.6 32 216-247 51-82 (363)
248 1e9r_A Conjugal transfer prote 74.7 2.1 7.1E-05 47.2 4.3 40 216-255 53-95 (437)
249 1rj9_A FTSY, signal recognitio 74.6 7.4 0.00025 40.6 8.3 32 216-247 102-136 (304)
250 2hzt_A Putative HTH-type trans 74.6 15 0.00051 31.4 9.1 45 646-690 29-77 (107)
251 3f6o_A Probable transcriptiona 74.4 6.2 0.00021 34.6 6.6 45 645-689 32-76 (118)
252 1r1u_A CZRA, repressor protein 74.3 11 0.00036 32.3 8.0 43 645-687 40-82 (106)
253 3b85_A Phosphate starvation-in 74.0 2.8 9.7E-05 41.1 4.7 37 199-235 5-41 (208)
254 3cuo_A Uncharacterized HTH-typ 73.7 11 0.00039 31.2 8.0 43 645-687 39-81 (99)
255 2jt1_A PEFI protein; solution 73.6 5.8 0.0002 32.1 5.6 37 643-679 23-59 (77)
256 1r7j_A Conserved hypothetical 73.4 18 0.00062 30.4 9.0 48 627-679 8-55 (95)
257 1q1h_A TFE, transcription fact 73.1 3.5 0.00012 35.6 4.6 33 645-677 34-66 (110)
258 2r44_A Uncharacterized protein 72.9 4.6 0.00016 42.4 6.4 27 211-237 41-67 (331)
259 3hr8_A Protein RECA; alpha and 72.7 5.9 0.0002 42.3 7.1 38 216-253 61-101 (356)
260 1ofh_A ATP-dependent HSL prote 72.6 7 0.00024 40.2 7.7 31 216-246 50-80 (310)
261 4a1f_A DNAB helicase, replicat 72.6 5.8 0.0002 42.1 7.0 108 216-328 46-169 (338)
262 1zu4_A FTSY; GTPase, signal re 72.4 34 0.0012 35.7 12.9 32 216-247 105-139 (320)
263 1sfx_A Conserved hypothetical 71.9 15 0.00053 30.8 8.5 46 645-690 35-81 (109)
264 1wp9_A ATP-dependent RNA helic 71.6 6.9 0.00024 42.8 7.8 78 240-324 360-446 (494)
265 3jth_A Transcription activator 71.6 9.4 0.00032 32.0 6.9 43 645-687 37-79 (98)
266 1ku9_A Hypothetical protein MJ 71.2 19 0.00067 32.1 9.6 43 645-687 42-86 (152)
267 2fbi_A Probable transcriptiona 70.9 23 0.00078 31.4 9.9 34 645-678 51-84 (142)
268 2oxc_A Probable ATP-dependent 70.7 14 0.00049 36.2 9.1 56 421-481 91-151 (230)
269 2zts_A Putative uncharacterize 70.7 8.5 0.00029 38.1 7.5 34 216-249 30-67 (251)
270 3tqn_A Transcriptional regulat 70.5 15 0.00051 31.9 8.1 55 625-680 15-69 (113)
271 4a5n_A Uncharacterized HTH-typ 70.1 33 0.0011 30.7 10.4 61 646-706 41-105 (131)
272 1p9r_A General secretion pathw 69.6 3.6 0.00012 45.1 4.6 29 205-233 154-184 (418)
273 2x8a_A Nuclear valosin-contain 69.4 8.1 0.00028 39.5 7.1 58 165-237 7-65 (274)
274 4ham_A LMO2241 protein; struct 69.3 15 0.00051 33.0 8.1 56 626-682 21-76 (134)
275 2l8b_A Protein TRAI, DNA helic 69.1 20 0.00068 34.2 9.0 58 204-261 37-100 (189)
276 3tqc_A Pantothenate kinase; bi 68.8 3 0.0001 43.9 3.7 109 219-328 95-209 (321)
277 3fmp_B ATP-dependent RNA helic 68.7 1 3.5E-05 50.4 0.0 73 241-320 333-406 (479)
278 1z7u_A Hypothetical protein EF 68.4 16 0.00055 31.5 7.9 32 646-677 37-69 (112)
279 1u94_A RECA protein, recombina 68.1 9.5 0.00033 40.7 7.5 35 216-250 63-100 (356)
280 1vec_A ATP-dependent RNA helic 67.6 25 0.00086 33.4 10.0 55 422-480 71-130 (206)
281 3bh0_A DNAB-like replicative h 67.4 30 0.001 35.9 11.2 35 215-249 67-104 (315)
282 3fe2_A Probable ATP-dependent 67.4 14 0.00047 36.7 8.2 71 422-496 102-182 (242)
283 2oap_1 GSPE-2, type II secreti 67.3 4.1 0.00014 45.9 4.7 32 202-233 245-277 (511)
284 3fho_A ATP-dependent RNA helic 67.2 1.8 6E-05 48.9 1.6 129 241-377 357-486 (508)
285 1r1t_A Transcriptional repress 67.2 15 0.00051 32.4 7.5 43 645-687 60-102 (122)
286 3pqk_A Biofilm growth-associat 67.2 11 0.00038 31.8 6.5 46 645-690 37-82 (102)
287 3bgw_A DNAB-like replicative h 67.1 21 0.00074 39.2 10.4 35 216-250 197-234 (444)
288 3jvv_A Twitching mobility prot 66.9 3.5 0.00012 44.2 3.8 18 216-233 123-140 (356)
289 2heo_A Z-DNA binding protein 1 66.9 6.6 0.00022 30.7 4.5 32 645-676 26-57 (67)
290 1xmk_A Double-stranded RNA-spe 66.9 8.2 0.00028 31.4 5.1 36 646-681 27-64 (79)
291 2xxa_A Signal recognition part 66.4 56 0.0019 35.7 13.5 24 647-670 399-422 (433)
292 1xn7_A Hypothetical protein YH 66.2 6.6 0.00022 31.9 4.4 33 645-677 17-49 (78)
293 2a61_A Transcriptional regulat 66.0 31 0.0011 30.6 9.8 34 645-678 48-81 (145)
294 3aez_A Pantothenate kinase; tr 65.8 4.6 0.00016 42.3 4.4 20 216-235 90-109 (312)
295 3r0a_A Putative transcriptiona 65.8 17 0.00058 32.0 7.6 33 645-677 43-75 (123)
296 3bor_A Human initiation factor 65.0 16 0.00053 36.1 8.1 73 421-496 97-179 (237)
297 1g41_A Heat shock protein HSLU 64.8 8 0.00027 42.6 6.2 32 216-247 50-81 (444)
298 1ub9_A Hypothetical protein PH 64.7 16 0.00054 30.3 6.9 34 645-678 31-64 (100)
299 1u2w_A CADC repressor, cadmium 64.5 13 0.00044 32.7 6.5 43 645-687 57-99 (122)
300 2lkp_A Transcriptional regulat 64.1 21 0.00072 30.9 7.9 43 645-687 46-88 (119)
301 2pjp_A Selenocysteine-specific 63.9 20 0.00069 31.5 7.6 35 646-680 22-56 (121)
302 2htj_A P fimbrial regulatory p 63.7 12 0.00042 30.1 5.7 33 645-677 15-47 (81)
303 2bjv_A PSP operon transcriptio 63.7 5.8 0.0002 40.1 4.6 23 215-237 28-50 (265)
304 4gl2_A Interferon-induced heli 63.6 12 0.00039 43.8 7.8 74 241-321 400-488 (699)
305 2gza_A Type IV secretion syste 63.4 4.1 0.00014 43.7 3.5 22 213-234 172-193 (361)
306 2pl3_A Probable ATP-dependent 63.1 13 0.00046 36.5 7.1 55 421-480 96-154 (236)
307 2qvo_A Uncharacterized protein 62.8 13 0.00045 31.0 5.9 34 645-678 31-64 (95)
308 2d1h_A ST1889, 109AA long hypo 62.7 38 0.0013 28.2 9.1 34 645-678 37-70 (109)
309 3neu_A LIN1836 protein; struct 62.4 22 0.00074 31.5 7.6 56 625-681 19-74 (125)
310 1kgd_A CASK, peripheral plasma 62.4 4 0.00014 38.7 2.9 21 215-235 4-24 (180)
311 3by6_A Predicted transcription 62.3 25 0.00086 31.2 8.0 54 626-680 18-71 (126)
312 2ek5_A Predicted transcription 61.6 21 0.00071 31.9 7.4 53 627-680 12-64 (129)
313 2nnn_A Probable transcriptiona 61.3 22 0.00076 31.3 7.7 33 645-677 53-85 (140)
314 1fuu_A Yeast initiation factor 61.1 1.7 5.9E-05 46.6 0.0 74 241-321 259-333 (394)
315 3nbx_X ATPase RAVA; AAA+ ATPas 61.1 7.4 0.00025 43.6 5.2 28 208-235 33-60 (500)
316 1j8m_F SRP54, signal recogniti 61.1 44 0.0015 34.5 10.8 31 218-248 100-133 (297)
317 3iuy_A Probable ATP-dependent 61.0 15 0.0005 36.0 6.9 72 421-496 93-173 (228)
318 3u2r_A Regulatory protein MARR 61.0 27 0.00092 32.2 8.5 34 645-678 63-96 (168)
319 2x4h_A Hypothetical protein SS 60.8 43 0.0015 29.6 9.6 34 645-678 32-65 (139)
320 2eyu_A Twitching motility prot 60.8 3.6 0.00012 41.9 2.3 19 215-233 24-42 (261)
321 2k02_A Ferrous iron transport 60.5 7.3 0.00025 32.3 3.7 33 645-677 17-49 (87)
322 2gxq_A Heat resistant RNA depe 60.3 20 0.00068 34.2 7.6 55 422-480 72-128 (207)
323 1xjc_A MOBB protein homolog; s 60.2 11 0.00037 35.6 5.4 15 218-232 6-20 (169)
324 2fsw_A PG_0823 protein; alpha- 59.7 23 0.00079 30.2 7.1 32 646-677 40-72 (107)
325 3nwn_A Kinesin-like protein KI 59.7 5.6 0.00019 42.5 3.7 25 209-233 96-122 (359)
326 3a8t_A Adenylate isopentenyltr 59.3 4.2 0.00014 43.1 2.6 17 217-233 41-57 (339)
327 1q57_A DNA primase/helicase; d 59.1 20 0.00067 40.1 8.3 36 215-250 241-280 (503)
328 1lvg_A Guanylate kinase, GMP k 59.0 5 0.00017 38.8 2.9 21 215-235 3-23 (198)
329 4ag6_A VIRB4 ATPase, type IV s 59.0 7.3 0.00025 42.1 4.6 36 216-251 35-73 (392)
330 3vaa_A Shikimate kinase, SK; s 58.9 6.5 0.00022 37.9 3.8 25 215-239 24-48 (199)
331 3sxy_A Transcriptional regulat 58.8 22 0.00074 34.7 7.7 54 625-680 18-71 (218)
332 1um8_A ATP-dependent CLP prote 58.7 7.9 0.00027 41.5 4.8 27 216-242 72-98 (376)
333 3ihu_A Transcriptional regulat 58.5 22 0.00075 34.8 7.7 55 625-681 22-76 (222)
334 1qde_A EIF4A, translation init 58.5 18 0.00063 35.0 7.1 55 421-480 81-139 (224)
335 3f3x_A Transcriptional regulat 58.4 24 0.00082 31.5 7.4 33 646-678 52-84 (144)
336 2ehv_A Hypothetical protein PH 58.2 7.6 0.00026 38.5 4.2 34 215-248 29-66 (251)
337 3uk6_A RUVB-like 2; hexameric 57.9 13 0.00046 39.3 6.4 23 216-238 70-92 (368)
338 3trf_A Shikimate kinase, SK; a 57.8 7.1 0.00024 36.8 3.8 23 216-238 5-27 (185)
339 3eco_A MEPR; mutlidrug efflux 57.6 25 0.00085 31.1 7.3 33 645-677 48-80 (139)
340 3tau_A Guanylate kinase, GMP k 57.5 5.3 0.00018 38.9 2.8 22 215-236 7-28 (208)
341 2pt7_A CAG-ALFA; ATPase, prote 57.5 5.1 0.00018 42.3 2.9 20 214-233 169-188 (330)
342 2dr3_A UPF0273 protein PH0284; 57.5 8.3 0.00028 38.1 4.4 36 215-250 22-60 (247)
343 1tbx_A ORF F-93, hypothetical 57.5 20 0.0007 29.8 6.3 36 646-681 24-63 (99)
344 3foz_A TRNA delta(2)-isopenten 57.5 5.8 0.0002 41.4 3.2 19 218-236 12-30 (316)
345 3bpv_A Transcriptional regulat 57.4 22 0.00075 31.3 6.9 33 646-678 45-77 (138)
346 3hrs_A Metalloregulator SCAR; 57.3 1.4E+02 0.0046 28.9 13.2 50 627-679 6-55 (214)
347 2c9o_A RUVB-like 1; hexameric 57.2 19 0.00067 39.6 7.8 23 216-238 63-85 (456)
348 3exa_A TRNA delta(2)-isopenten 56.8 5.1 0.00017 41.9 2.7 19 217-235 4-22 (322)
349 2va8_A SSO2462, SKI2-type heli 56.3 31 0.001 40.4 9.7 63 236-298 247-346 (715)
350 1qhx_A CPT, protein (chloramph 56.2 9.8 0.00033 35.5 4.4 30 216-245 3-32 (178)
351 3ly5_A ATP-dependent RNA helic 56.0 36 0.0012 34.1 9.0 72 421-496 125-207 (262)
352 2ze6_A Isopentenyl transferase 55.8 7.2 0.00025 39.3 3.6 18 219-236 4-21 (253)
353 3f6v_A Possible transcriptiona 55.7 21 0.00071 32.9 6.4 42 646-687 73-114 (151)
354 2l82_A Designed protein OR32; 55.6 47 0.0016 28.1 7.8 52 425-476 5-56 (162)
355 4etp_A Kinesin-like protein KA 55.3 7.9 0.00027 42.1 4.0 26 209-234 132-159 (403)
356 2hr3_A Probable transcriptiona 54.8 34 0.0012 30.5 7.8 33 645-677 51-83 (147)
357 2h58_A Kinesin-like protein KI 54.7 8 0.00027 40.8 3.8 25 209-233 72-98 (330)
358 3aaf_A Werner syndrome ATP-dep 54.6 16 0.00056 32.9 5.4 37 770-807 15-51 (134)
359 1kag_A SKI, shikimate kinase I 54.5 9.8 0.00033 35.3 4.1 26 216-241 4-29 (173)
360 2hs5_A Putative transcriptiona 54.5 31 0.0011 34.2 8.1 54 625-680 34-87 (239)
361 2nr8_A Kinesin-like protein KI 54.3 7.9 0.00027 41.3 3.7 25 209-233 95-121 (358)
362 1bg2_A Kinesin; motor protein, 53.9 7.8 0.00027 40.8 3.5 25 209-233 69-95 (325)
363 2pg4_A Uncharacterized protein 53.7 30 0.001 28.6 6.7 38 645-682 31-69 (95)
364 3a00_A Guanylate kinase, GMP k 53.7 7.4 0.00025 37.0 3.1 21 216-236 1-21 (186)
365 3tr0_A Guanylate kinase, GMP k 53.7 6.7 0.00023 37.6 2.8 22 215-236 6-27 (205)
366 1v8k_A Kinesin-like protein KI 53.6 7.8 0.00027 42.1 3.6 26 209-234 146-173 (410)
367 1yyv_A Putative transcriptiona 53.5 33 0.0011 30.6 7.3 32 646-677 50-82 (131)
368 2qmh_A HPR kinase/phosphorylas 53.4 5.7 0.0002 38.7 2.2 17 216-232 34-50 (205)
369 3dmq_A RNA polymerase-associat 53.1 20 0.0007 43.7 7.6 93 225-325 486-584 (968)
370 3d3q_A TRNA delta(2)-isopenten 53.1 9.8 0.00034 40.3 4.2 20 218-237 9-28 (340)
371 2f2e_A PA1607; transcription f 53.1 28 0.00096 31.7 6.9 42 646-687 39-82 (146)
372 1z6g_A Guanylate kinase; struc 53.0 7.7 0.00026 38.1 3.2 21 215-235 22-42 (218)
373 2v9p_A Replication protein E1; 52.9 7.3 0.00025 40.6 3.1 34 215-249 125-159 (305)
374 3crm_A TRNA delta(2)-isopenten 52.8 7.6 0.00026 40.8 3.2 20 218-237 7-26 (323)
375 2rdp_A Putative transcriptiona 52.6 27 0.00091 31.3 6.7 33 645-677 57-89 (150)
376 3lre_A Kinesin-like protein KI 52.6 8.2 0.00028 41.2 3.5 25 209-233 97-123 (355)
377 3g3z_A NMB1585, transcriptiona 52.4 30 0.001 30.9 7.0 33 645-677 46-78 (145)
378 3cmu_A Protein RECA, recombina 52.4 48 0.0016 43.4 10.9 44 209-252 370-422 (2050)
379 2j41_A Guanylate kinase; GMP, 52.3 6.5 0.00022 37.8 2.5 22 215-236 5-26 (207)
380 3dc4_A Kinesin-like protein NO 52.3 7.9 0.00027 41.1 3.3 25 209-233 86-112 (344)
381 2jsc_A Transcriptional regulat 52.1 15 0.00051 32.1 4.7 42 646-687 36-77 (118)
382 2zj8_A DNA helicase, putative 51.9 28 0.00096 40.8 8.4 64 235-298 231-328 (720)
383 3s2w_A Transcriptional regulat 51.7 32 0.0011 31.3 7.2 33 645-677 65-97 (159)
384 3deu_A Transcriptional regulat 51.7 29 0.001 32.1 6.9 33 645-677 69-101 (166)
385 2lnb_A Z-DNA-binding protein 1 51.7 16 0.00056 29.3 4.1 32 645-676 35-66 (80)
386 2vvg_A Kinesin-2; motor protei 51.6 8.8 0.0003 40.8 3.5 25 209-233 81-107 (350)
387 3ney_A 55 kDa erythrocyte memb 51.5 7.8 0.00027 37.6 2.9 21 215-235 18-38 (197)
388 1t5c_A CENP-E protein, centrom 51.5 7.7 0.00026 41.3 3.1 25 209-233 69-95 (349)
389 2ewv_A Twitching motility prot 51.4 6.2 0.00021 42.5 2.3 19 215-233 135-153 (372)
390 3u06_A Protein claret segregat 51.4 9.5 0.00033 41.5 3.8 25 209-233 130-156 (412)
391 2y65_A Kinesin, kinesin heavy 51.3 8.9 0.00031 41.0 3.5 25 209-233 76-102 (365)
392 2nyx_A Probable transcriptiona 51.2 40 0.0014 31.1 7.9 33 645-677 60-92 (168)
393 1x88_A Kinesin-like protein KI 51.0 7.8 0.00027 41.4 3.0 25 209-233 80-106 (359)
394 3b6u_A Kinesin-like protein KI 51.0 8.8 0.0003 41.2 3.4 25 209-233 93-119 (372)
395 2r62_A Cell division protease 50.9 6 0.0002 40.0 2.1 22 216-237 44-65 (268)
396 1q0u_A Bstdead; DEAD protein, 50.8 18 0.0006 35.1 5.5 55 422-480 72-134 (219)
397 2zfi_A Kinesin-like protein KI 50.7 8.3 0.00029 41.3 3.2 25 209-233 81-107 (366)
398 1ry6_A Internal kinesin; kines 50.6 9.2 0.00031 40.8 3.5 20 215-234 82-103 (360)
399 1p6r_A Penicillinase repressor 50.5 36 0.0012 27.2 6.5 42 646-687 25-70 (82)
400 3iij_A Coilin-interacting nucl 50.3 12 0.0004 35.1 3.9 23 215-237 10-32 (180)
401 1zp6_A Hypothetical protein AT 50.2 6.7 0.00023 37.2 2.2 21 215-235 8-28 (191)
402 1jgs_A Multiple antibiotic res 50.2 40 0.0014 29.6 7.4 32 646-677 50-81 (138)
403 4fcw_A Chaperone protein CLPB; 50.2 9.3 0.00032 39.4 3.5 20 217-236 48-67 (311)
404 1wrb_A DJVLGB; RNA helicase, D 50.2 46 0.0016 32.9 8.6 56 422-481 100-159 (253)
405 1f9v_A Kinesin-like protein KA 50.1 7.3 0.00025 41.4 2.6 26 209-234 76-103 (347)
406 4a14_A Kinesin, kinesin-like p 50.0 9.6 0.00033 40.4 3.5 25 209-233 75-101 (344)
407 3gbj_A KIF13B protein; kinesin 50.0 9.2 0.00032 40.8 3.4 25 209-233 84-110 (354)
408 1okr_A MECI, methicillin resis 49.9 28 0.00095 30.2 6.2 46 645-690 25-74 (123)
409 2heh_A KIF2C protein; kinesin, 49.9 9.6 0.00033 41.1 3.5 26 209-234 126-153 (387)
410 1u0j_A DNA replication protein 49.7 13 0.00044 37.9 4.2 35 197-234 82-122 (267)
411 1goj_A Kinesin, kinesin heavy 49.7 8.9 0.00031 40.9 3.2 25 209-233 72-98 (355)
412 2fbh_A Transcriptional regulat 49.6 59 0.002 28.7 8.5 33 645-677 53-85 (146)
413 1ojl_A Transcriptional regulat 49.5 10 0.00035 39.4 3.7 21 216-236 25-45 (304)
414 1znw_A Guanylate kinase, GMP k 49.5 8.6 0.0003 37.2 2.9 25 212-236 16-40 (207)
415 3oop_A LIN2960 protein; protei 49.3 43 0.0015 29.6 7.6 32 646-677 53-84 (143)
416 2v6i_A RNA helicase; membrane, 49.1 12 0.00042 40.9 4.4 55 240-298 170-225 (431)
417 2wbe_C Bipolar kinesin KRP-130 49.1 8.6 0.00029 41.3 3.0 25 209-233 92-118 (373)
418 3e6m_A MARR family transcripti 48.9 29 0.00099 31.7 6.4 33 645-677 68-100 (161)
419 3nwj_A ATSK2; P loop, shikimat 48.8 13 0.00045 37.4 4.2 28 214-241 46-73 (250)
420 1yks_A Genome polyprotein [con 48.5 6.9 0.00024 43.1 2.2 56 239-298 175-231 (440)
421 2qor_A Guanylate kinase; phosp 48.4 9.9 0.00034 36.7 3.1 23 214-236 10-32 (204)
422 3cmw_A Protein RECA, recombina 48.2 26 0.0009 45.0 7.6 46 216-261 1431-1479(1706)
423 3i4p_A Transcriptional regulat 48.1 38 0.0013 31.3 7.1 33 645-677 18-51 (162)
424 3tgn_A ADC operon repressor AD 48.1 24 0.00082 31.5 5.6 34 645-678 52-85 (146)
425 1ixz_A ATP-dependent metallopr 48.1 14 0.00049 36.8 4.4 21 217-237 50-70 (254)
426 1tue_A Replication protein E1; 48.0 13 0.00046 36.2 3.9 27 207-233 45-75 (212)
427 3bro_A Transcriptional regulat 48.0 50 0.0017 29.0 7.7 33 645-677 51-83 (141)
428 3t0q_A AGR253WP; kinesin, alph 47.8 8.6 0.00029 40.9 2.7 26 209-234 77-104 (349)
429 2z43_A DNA repair and recombin 47.8 13 0.00044 39.0 4.1 36 216-251 107-151 (324)
430 1y0u_A Arsenical resistance op 47.7 23 0.00078 29.4 4.9 34 645-678 44-77 (96)
431 1hw1_A FADR, fatty acid metabo 47.7 35 0.0012 33.6 7.2 54 626-680 14-67 (239)
432 3rc3_A ATP-dependent RNA helic 47.6 34 0.0012 39.8 8.0 78 242-327 321-401 (677)
433 2eth_A Transcriptional regulat 47.4 42 0.0014 30.3 7.2 33 645-677 59-91 (154)
434 4aik_A Transcriptional regulat 47.4 41 0.0014 30.6 7.1 31 647-677 49-79 (151)
435 3cdh_A Transcriptional regulat 47.2 31 0.0011 31.2 6.3 33 645-677 58-90 (155)
436 3lw7_A Adenylate kinase relate 47.1 12 0.00043 34.3 3.5 19 218-236 3-21 (179)
437 3kta_A Chromosome segregation 47.0 11 0.00039 35.3 3.2 22 218-239 28-49 (182)
438 1y63_A LMAJ004144AAA protein; 47.0 10 0.00034 36.0 2.9 24 216-239 10-33 (184)
439 3cob_A Kinesin heavy chain-lik 46.7 10 0.00034 40.7 3.0 25 209-233 71-97 (369)
440 2owm_A Nckin3-434, related to 46.6 10 0.00035 41.7 3.2 25 209-233 128-154 (443)
441 3hsr_A HTH-type transcriptiona 46.6 50 0.0017 29.2 7.5 33 645-677 51-83 (140)
442 2xau_A PRE-mRNA-splicing facto 46.6 13 0.00045 44.1 4.3 75 240-321 302-393 (773)
443 4gp7_A Metallophosphoesterase; 46.4 7 0.00024 36.7 1.6 20 216-235 9-28 (171)
444 1lj9_A Transcriptional regulat 45.9 39 0.0013 29.9 6.7 33 645-677 44-76 (144)
445 2bdt_A BH3686; alpha-beta prot 45.9 11 0.00039 35.6 3.0 21 217-237 3-23 (189)
446 2xvc_A ESCRT-III, SSO0910; cel 45.7 24 0.00082 26.5 3.9 33 569-603 26-58 (59)
447 4eun_A Thermoresistant glucoki 45.6 11 0.00037 36.3 2.8 23 215-237 28-50 (200)
448 1ylf_A RRF2 family protein; st 45.5 23 0.00079 32.4 5.0 47 645-693 31-77 (149)
449 3c7j_A Transcriptional regulat 45.4 47 0.0016 32.9 7.7 54 625-680 32-85 (237)
450 1ex7_A Guanylate kinase; subst 45.3 19 0.00065 34.4 4.5 17 217-233 2-18 (186)
451 3cjn_A Transcriptional regulat 45.3 39 0.0013 30.7 6.7 33 645-677 67-99 (162)
452 3eph_A TRNA isopentenyltransfe 45.0 10 0.00035 41.1 2.8 17 218-234 4-20 (409)
453 2gxg_A 146AA long hypothetical 45.0 44 0.0015 29.6 6.8 33 645-677 51-83 (146)
454 4b8x_A SCO5413, possible MARR- 44.9 1.2E+02 0.0041 27.1 9.9 33 645-677 52-84 (147)
455 2pex_A Transcriptional regulat 44.7 30 0.001 31.2 5.7 33 645-677 62-94 (153)
456 4a2p_A RIG-I, retinoic acid in 44.6 16 0.00054 41.0 4.5 77 240-323 389-479 (556)
457 1gvn_B Zeta; postsegregational 44.4 14 0.00048 38.0 3.7 33 217-249 34-66 (287)
458 3kb2_A SPBC2 prophage-derived 44.4 15 0.00052 33.8 3.6 20 218-237 3-22 (173)
459 1knq_A Gluconate kinase; ALFA/ 44.2 13 0.00043 34.7 3.0 22 216-237 8-29 (175)
460 2fu4_A Ferric uptake regulatio 44.2 47 0.0016 26.5 6.2 42 645-686 34-81 (83)
461 1iy2_A ATP-dependent metallopr 44.1 18 0.0006 36.8 4.4 21 217-237 74-94 (278)
462 3lnc_A Guanylate kinase, GMP k 44.0 9 0.00031 37.8 2.0 21 215-235 26-46 (231)
463 1kht_A Adenylate kinase; phosp 43.8 12 0.0004 35.3 2.8 22 216-237 3-24 (192)
464 3bfn_A Kinesin-like protein KI 43.8 9 0.00031 41.3 2.1 25 209-233 90-116 (388)
465 3k0l_A Repressor protein; heli 43.7 32 0.0011 31.5 5.7 33 645-677 61-93 (162)
466 3dkp_A Probable ATP-dependent 43.2 8 0.00027 38.4 1.5 72 422-496 98-181 (245)
467 3bj6_A Transcriptional regulat 43.2 43 0.0015 29.9 6.6 33 645-677 55-87 (152)
468 3nqo_A MARR-family transcripti 43.2 43 0.0015 31.7 6.8 33 645-677 58-90 (189)
469 2p6r_A Afuhel308 helicase; pro 43.1 37 0.0013 39.6 7.5 62 237-298 238-330 (702)
470 4akg_A Glutathione S-transfera 43.0 13 0.00044 50.1 3.8 25 213-237 920-944 (2695)
471 2dhr_A FTSH; AAA+ protein, hex 42.7 40 0.0014 37.6 7.2 23 217-239 65-87 (499)
472 1g8p_A Magnesium-chelatase 38 42.6 15 0.00051 38.5 3.7 24 216-239 45-68 (350)
473 2j37_W Signal recognition part 42.6 51 0.0018 36.8 8.1 25 647-671 403-427 (504)
474 3uie_A Adenylyl-sulfate kinase 42.5 11 0.00038 36.2 2.4 23 215-237 24-46 (200)
475 1zuh_A Shikimate kinase; alpha 42.3 17 0.00057 33.6 3.6 25 217-241 8-32 (168)
476 2di3_A Bacterial regulatory pr 42.3 37 0.0013 33.5 6.4 54 625-679 10-65 (239)
477 2xub_A DNA-directed RNA polyme 42.2 1.9E+02 0.0064 32.4 12.9 97 576-677 299-407 (534)
478 3fmo_B ATP-dependent RNA helic 42.2 42 0.0014 34.5 7.0 68 422-496 162-241 (300)
479 1v5w_A DMC1, meiotic recombina 42.0 17 0.00059 38.4 4.0 36 216-251 122-166 (343)
480 3cm0_A Adenylate kinase; ATP-b 41.9 9.6 0.00033 35.9 1.8 22 216-237 4-25 (186)
481 2wv9_A Flavivirin protease NS2 41.9 16 0.00056 42.5 4.1 55 240-298 409-464 (673)
482 3f8m_A GNTR-family protein tra 41.8 60 0.0021 32.4 7.9 53 626-682 21-73 (248)
483 2vhj_A Ntpase P4, P4; non- hyd 41.6 8 0.00027 40.6 1.2 33 216-248 123-155 (331)
484 2rep_A Kinesin-like protein KI 41.5 11 0.00036 40.6 2.2 25 209-233 107-133 (376)
485 1s96_A Guanylate kinase, GMP k 41.4 14 0.00046 36.5 2.8 22 214-235 14-35 (219)
486 3t61_A Gluconokinase; PSI-biol 41.3 17 0.00059 34.7 3.6 21 217-237 19-39 (202)
487 1s3j_A YUSO protein; structura 41.3 56 0.0019 29.3 7.1 33 645-677 52-84 (155)
488 1ly1_A Polynucleotide kinase; 41.3 13 0.00045 34.5 2.7 18 218-235 4-21 (181)
489 1zd8_A GTP:AMP phosphotransfer 41.2 17 0.00059 35.5 3.7 26 216-241 7-32 (227)
490 1f2t_A RAD50 ABC-ATPase; DNA d 41.2 15 0.0005 33.7 2.9 17 218-234 25-41 (149)
491 1on2_A Transcriptional regulat 41.1 29 0.00099 31.0 4.9 34 645-678 23-56 (142)
492 2ius_A DNA translocase FTSK; n 40.9 14 0.00047 41.5 3.1 22 215-236 166-187 (512)
493 2iyv_A Shikimate kinase, SK; t 40.6 21 0.00072 33.4 4.1 25 217-241 3-27 (184)
494 3ech_A MEXR, multidrug resista 40.4 22 0.00075 31.7 3.9 33 645-677 52-84 (142)
495 3fm5_A Transcriptional regulat 40.3 27 0.00091 31.5 4.6 33 645-677 55-87 (150)
496 2qq9_A Diphtheria toxin repres 40.3 1.4E+02 0.0047 29.1 10.2 34 646-679 26-59 (226)
497 1in4_A RUVB, holliday junction 40.2 14 0.00048 38.8 3.0 48 627-678 263-311 (334)
498 1sq5_A Pantothenate kinase; P- 40.2 33 0.0011 35.5 5.8 21 216-236 80-100 (308)
499 2fsf_A Preprotein translocase 40.1 70 0.0024 37.9 9.0 72 419-496 112-200 (853)
500 3k1j_A LON protease, ATP-depen 40.0 20 0.0007 41.1 4.5 26 213-238 57-82 (604)
No 1
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.5e-63 Score=576.86 Aligned_cols=348 Identities=36% Similarity=0.598 Sum_probs=309.4
Q ss_pred ccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEE
Q 036378 166 TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245 (815)
Q Consensus 166 ~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~l 245 (815)
.|+++++++++.+.+.+. |||..|||+|.++|+.+++|+|+++++|||+|||+||++|++...+.+|
T Consensus 3 ~fe~l~L~~~~~~~l~~~-------------~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~l 69 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQET-------------FGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTV 69 (523)
T ss_dssp CCCCSSHHHHHHHHHHHT-------------TCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEE
T ss_pred ChhhCCCCHHHHHHHHHH-------------hCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEE
Confidence 577788888777777664 8999999999999999999999999999999999999999999999999
Q ss_pred EEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEecc
Q 036378 246 VVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEA 324 (815)
Q Consensus 246 Vl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEa 324 (815)
||+|+++||.||++.+.+ ++....+++.....+....+..+..|.++|+|+|||+|....+...+. ..++++||||||
T Consensus 70 vi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~-~~~~~~vViDEa 148 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLA-HWNPVLLAVDEA 148 (523)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHT-TSCEEEEEESSG
T ss_pred EECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHh-hCCCCEEEEeCc
Confidence 999999999999999987 677788888888888888888888899999999999998776666665 578999999999
Q ss_pred ccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccch
Q 036378 325 HCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQN 404 (815)
Q Consensus 325 H~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~ 404 (815)
||+++|||+||+.|..+ .. +....+..+++++|||++..+..++.+.+++....++..++.++++.+.+......
T Consensus 149 H~i~~~g~~fr~~~~~l-~~-l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~--- 223 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAAL-GQ-LRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKP--- 223 (523)
T ss_dssp GGGCTTSSCCCHHHHGG-GG-HHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSH---
T ss_pred cccCcCCCccHHHHHHH-HH-HHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCH---
Confidence 99999999999999988 33 34455678899999999999999999999888777777888899998887654322
Q ss_pred hhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccccc
Q 036378 405 ERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGM 484 (815)
Q Consensus 405 ~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~ 484 (815)
...+..++....+.+++|||++++.++.+++.|...|+.+..|||+|+.++|.+++++|++|+.+|||||++++|
T Consensus 224 -----~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 224 -----LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp -----HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred -----HHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 222334444456779999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 485 GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
|||+|+|++||||++|.|+++|+||+|||||+|++|.|++|+++.|...++.+
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~ 351 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887665544
No 2
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.5e-62 Score=574.34 Aligned_cols=348 Identities=33% Similarity=0.553 Sum_probs=301.2
Q ss_pred ccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 036378 168 SELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247 (815)
Q Consensus 168 ~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl 247 (815)
.++++++++.+.|.+ +|||..|||+|+++|+.++.|+|+++++|||+|||+||++|++...+++|||
T Consensus 24 ~~~~l~~~l~~~L~~-------------~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVi 90 (591)
T 2v1x_A 24 EDFPWSGKVKDILQN-------------VFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVI 90 (591)
T ss_dssp SCSTTHHHHHHHHHH-------------TSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEE
T ss_pred ccCCCCHHHHHHHHH-------------HhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEE
Confidence 345666666666555 4899999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHH--hcCCceEEEeChhhhhch-hhhhh---hhhcCcccEEE
Q 036378 248 CPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLI--QVGAIKVLFVSPERFLNA-DFLSI---FTATSLISLVV 320 (815)
Q Consensus 248 ~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l--~~g~~~Ili~TPe~L~~~-~~~~~---~~~~~~i~~lV 320 (815)
+|+++||.|+++.+.+ ++....+++.....+....+..+ ..+.++|+|+|||+|... .+... ...+.++++||
T Consensus 91 sP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iV 170 (591)
T 2v1x_A 91 CPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIA 170 (591)
T ss_dssp CSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEE
T ss_pred eCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEE
Confidence 9999999999999988 67788888988888887777777 467899999999999652 22222 22256899999
Q ss_pred EeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCC
Q 036378 321 VDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGN 400 (815)
Q Consensus 321 iDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~ 400 (815)
||||||+++|||+||+.|..+ ..++...+..++++||||+++.+..++...+..+....+...+.++++.+.+.....
T Consensus 171 iDEAH~is~~g~dfr~~~~~l--~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~ 248 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKAL--GILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPS 248 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGG--GHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCS
T ss_pred EECcccccccccccHHHHHHH--HHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCC
Confidence 999999999999999999886 345556677899999999999999999999999888888888899999998876543
Q ss_pred ccchhhhhhHHHHHHHHh-hccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEc
Q 036378 401 NRQNERSAYVDEVFSFHR-SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT 479 (815)
Q Consensus 401 ~~~~~~~~~~~~l~~l~~-~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT 479 (815)
... ..+..+..++. .....++||||++++.++.+++.|...|+.+..|||+|++.+|.+++++|.+|+.+|||||
T Consensus 249 ~~~----~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT 324 (591)
T 2v1x_A 249 NTE----DFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT 324 (591)
T ss_dssp SHH----HHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEEC
T ss_pred cHH----HHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 322 22333334433 3356789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHH
Q 036378 480 VAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRL 534 (815)
Q Consensus 480 ~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l 534 (815)
++|+||||+|+|++||||++|.|+++|+||+|||||+|++|.|++||++.|...+
T Consensus 325 ~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~ 379 (591)
T 2v1x_A 325 VAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRI 379 (591)
T ss_dssp TTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHH
T ss_pred chhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHH
Confidence 9999999999999999999999999999999999999999999999998776544
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-50 Score=460.06 Aligned_cols=340 Identities=18% Similarity=0.240 Sum_probs=271.4
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
..+|+++++++.+++.+.. +||..|||+|+++|+.+++|+|+++++|||||||++|++|++..
T Consensus 55 ~~~f~~~~l~~~l~~~l~~--------------~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNK--------------SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHH--------------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 4679999999999999998 79999999999999999999999999999999999999999743
Q ss_pred --------CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhh
Q 036378 241 --------PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307 (815)
Q Consensus 241 --------~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~ 307 (815)
++++|||+||++|+.|+++.+.++ ++...+.++..... ....+.. +++|+|+||++|.+.+..
T Consensus 121 ~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~-~~~Ivv~Tp~~l~~~l~~ 196 (434)
T 2db3_A 121 DPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRH---QNECITR-GCHVVIATPGRLLDFVDR 196 (434)
T ss_dssp SCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHH---HHHHHTT-CCSEEEECHHHHHHHHHT
T ss_pred cccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHH---HHHHhhc-CCCEEEEChHHHHHHHHh
Confidence 468999999999999999988763 33444555544433 3333444 489999999999887655
Q ss_pred hhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeec-cc
Q 036378 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQK-AQ 386 (815)
Q Consensus 308 ~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~ 386 (815)
.... +.++++|||||||++.+| +|++.+..+...+ ...+..|++++|||++..+...+...+..+....+.. ..
T Consensus 197 ~~~~-l~~~~~lVlDEah~~~~~--gf~~~~~~i~~~~--~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~ 271 (434)
T 2db3_A 197 TFIT-FEDTRFVVLDEADRMLDM--GFSEDMRRIMTHV--TMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGG 271 (434)
T ss_dssp TSCC-CTTCCEEEEETHHHHTST--TTHHHHHHHHHCT--TSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTC
T ss_pred CCcc-cccCCeEEEccHhhhhcc--CcHHHHHHHHHhc--CCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccc
Confidence 5444 778999999999999998 6888887773321 1245679999999999988776666555332221111 11
Q ss_pred cCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 036378 387 LRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQE 466 (815)
Q Consensus 387 ~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~ 466 (815)
...++...+....... ....+..++..... +++|||++++.++.+++.|...|+.+..+||+|++.+|.++++
T Consensus 272 ~~~~i~~~~~~~~~~~------k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~ 344 (434)
T 2db3_A 272 ACSDVKQTIYEVNKYA------KRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALR 344 (434)
T ss_dssp CCTTEEEEEEECCGGG------HHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHH
T ss_pred cccccceEEEEeCcHH------HHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHH
Confidence 2234444443333222 12233344444333 4999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccc-cHHH
Q 036378 467 LFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI-TYFR 533 (815)
Q Consensus 467 ~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~-d~~~ 533 (815)
+|++|+.+|||||+++++|||+|+|++|||||+|.+.++|+||+||+||.|+.|.|++|++++ |...
T Consensus 345 ~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~ 412 (434)
T 2db3_A 345 DFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAI 412 (434)
T ss_dssp HHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGG
T ss_pred HHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999854 4433
No 4
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.2e-50 Score=473.45 Aligned_cols=356 Identities=17% Similarity=0.227 Sum_probs=276.6
Q ss_pred cccccc----ccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCChhHHHHHHHHHHH
Q 036378 166 TASELE----LVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVL--DKKSTMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 166 ~~~~l~----l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il--~g~d~li~apTGsGKTl~~~lp~l~ 239 (815)
+|+++. +++++++++.. +||..|||+|.++|+.++ .++|+|++||||||||+||++|++.
T Consensus 69 ~~~~l~~~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~ 134 (563)
T 3i5x_A 69 TLDSLLEEGVLDKEIHKAITR--------------MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQ 134 (563)
T ss_dssp CHHHHHHTTSSCHHHHHHHHT--------------TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHHhhcCCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHH
Confidence 444444 88899999888 799999999999999999 6789999999999999999999985
Q ss_pred c----------CCcEEEEcccHHHHHHHHHhcCCC------ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhc
Q 036378 240 L----------PGLTLVVCPLVALMIDQLRHLPPV------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303 (815)
Q Consensus 240 ~----------~~~~lVl~P~~~L~~q~~~~l~~~------~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~ 303 (815)
. +.++|||+||++|+.|+++.+.+. +....+....+.......+..+..+.++|+|+||++|.+
T Consensus 135 ~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~ 214 (563)
T 3i5x_A 135 HLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLID 214 (563)
T ss_dssp HHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred HHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHH
Confidence 3 248999999999999999998863 111222222333344445555655579999999999988
Q ss_pred hhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHh---cccceeEeeecccChhHHHHHHHHhcCCccc
Q 036378 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR---LNVECILAMTATATTTTLRDVMSALEIPLSN 380 (815)
Q Consensus 304 ~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~---~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~ 380 (815)
.+.......+..+++|||||||++++| +|++.+..+...+.... .+..|+++||||++..+...+...+..+...
T Consensus 215 ~l~~~~~~~~~~~~~lViDEah~l~~~--~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~ 292 (563)
T 3i5x_A 215 VLEKYSNKFFRFVDYKVLDEADRLLEI--GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECL 292 (563)
T ss_dssp HHHHHHHHHCTTCCEEEEETHHHHTST--TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEE
T ss_pred HHHhccccccccceEEEEeCHHHHhcc--chHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceE
Confidence 766543334778999999999999999 59999998855443322 2356899999999998777666555544333
Q ss_pred eeec-----cccCCCeeEEEEecCCccchhhhhhHHHHHHH-HhhccccceEEEecchHHHHHHHHHHhhC---CCcEEE
Q 036378 381 LIQK-----AQLRDNLQLSVSLSGNNRQNERSAYVDEVFSF-HRSSKHYYILQISGKHFETDLISRYLCDN---SISVKS 451 (815)
Q Consensus 381 ~~~~-----~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~ivf~~s~~~~e~l~~~L~~~---g~~v~~ 451 (815)
.+.. ......+...+........ .....+..+... .......+++|||++++.++.+++.|... ++.+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~ 371 (563)
T 3i5x_A 293 FLDTVDKNEPEAHERIDQSVVISEKFAN-SIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILE 371 (563)
T ss_dssp EEESSCSSSCSSCTTEEEEEEEESSTTH-HHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred EEeccCCCCccccccCceEEEECchhHh-hHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEE
Confidence 2221 1122233333333322211 111222222222 22345679999999999999999999986 999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccH
Q 036378 452 YHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531 (815)
Q Consensus 452 ~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~ 531 (815)
+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||||++|.++++|+||+|||||.|+.|.|++|+.+.|.
T Consensus 372 ~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 372 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp ESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred ecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhh
Q 036378 532 FRLRSLM 538 (815)
Q Consensus 532 ~~l~~~~ 538 (815)
..++.+.
T Consensus 452 ~~~~~l~ 458 (563)
T 3i5x_A 452 PFVRELE 458 (563)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888775
No 5
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-49 Score=468.61 Aligned_cols=351 Identities=17% Similarity=0.220 Sum_probs=275.4
Q ss_pred ccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHH--cCCCEEEEcCCChhHHHHHHHHHHHc---------
Q 036378 172 LVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVL--DKKSTMLVLPTGAGKSLCYQIPAMIL--------- 240 (815)
Q Consensus 172 l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il--~g~d~li~apTGsGKTl~~~lp~l~~--------- 240 (815)
+++++++++.. +||..|||+|.++|+.++ .|+|+++++|||+|||+||++|++..
T Consensus 28 l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~ 93 (579)
T 3sqw_A 28 LDKEIHKAITR--------------MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93 (579)
T ss_dssp SCHHHHHHHHT--------------TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSST
T ss_pred CCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccccc
Confidence 89999999988 899999999999999999 78899999999999999999999843
Q ss_pred -CCcEEEEcccHHHHHHHHHhcCCCc------eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhc
Q 036378 241 -PGLTLVVCPLVALMIDQLRHLPPVI------HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313 (815)
Q Consensus 241 -~~~~lVl~P~~~L~~q~~~~l~~~~------~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~ 313 (815)
+.++|||+||++|+.|+++.+.+.. ....+....+.......+..+..+.++|+|+||++|.+.+.......+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 3489999999999999999988632 222222223333444555666665799999999999887665433347
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHHHh---cccceeEeeecccChhHHHHHHHHhcCCccceeec-----c
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR---LNVECILAMTATATTTTLRDVMSALEIPLSNLIQK-----A 385 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~---~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~-----~ 385 (815)
..+++|||||||++++| +|++.+..+...+.... ....++++||||++..+...+...+..+....+.. .
T Consensus 174 ~~~~~lViDEah~l~~~--gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEI--GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp TTCCEEEEETHHHHTST--TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred ccCCEEEEEChHHhhcC--CCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 78999999999999999 59999998854433322 12568999999999988776666655543332221 1
Q ss_pred ccCCCeeEEEEecCCccchhhhhhHHHHHHHHh-hccccceEEEecchHHHHHHHHHHhhC---CCcEEEecCCCCHHHH
Q 036378 386 QLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR-SSKHYYILQISGKHFETDLISRYLCDN---SISVKSYHSGIPAKDR 461 (815)
Q Consensus 386 ~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~ivf~~s~~~~e~l~~~L~~~---g~~v~~~h~~~~~~~R 461 (815)
.....+...+........ .....+..+...+. .....+++|||++++.++.+++.|... ++.+..+||+|++.+|
T Consensus 252 ~~~~~i~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 252 EAHERIDQSVVISEKFAN-SIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp SSCTTEEEEEEEESSTTH-HHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred ccccccceEEEEecchhh-hHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 122333333333322221 11122222222222 245678999999999999999999986 9999999999999999
Q ss_pred HHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhh
Q 036378 462 SRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMY 539 (815)
Q Consensus 462 ~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~ 539 (815)
.+++++|++|+.+|||||+++++|||+|+|++||||++|.++++|+||+|||||+|+.|.|++|+++.|...++.+..
T Consensus 331 ~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~ 408 (579)
T 3sqw_A 331 TSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 408 (579)
T ss_dssp HHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888887753
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-49 Score=448.73 Aligned_cols=348 Identities=20% Similarity=0.276 Sum_probs=274.9
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
..+|+++++++.+++++.. +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++..
T Consensus 14 ~~~f~~~~l~~~l~~~l~~--------------~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~ 79 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIEL--------------TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYS 79 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHH--------------HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 3579999999999999998 79999999999999999999999999999999999999999743
Q ss_pred ---------------------CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEE
Q 036378 241 ---------------------PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVL 294 (815)
Q Consensus 241 ---------------------~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Il 294 (815)
.+++|||+||++|+.|+++.+.+. +....+.++....+ ....+.. +++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~-~~~I~ 155 (417)
T 2i4i_A 80 DGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQ---QIRDLER-GCHLL 155 (417)
T ss_dssp HCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHH---HHHHHTT-CCSEE
T ss_pred ccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHH---HHHHhhC-CCCEE
Confidence 157999999999999999998752 34444555544433 3334443 48999
Q ss_pred EeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHh
Q 036378 295 FVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374 (815)
Q Consensus 295 i~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l 374 (815)
|+||++|.+.+....+. +..+++|||||||++.+| +|++.+..+............+++++|||++..+...+..++
T Consensus 156 v~Tp~~l~~~l~~~~~~-~~~~~~iViDEah~~~~~--~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 232 (417)
T 2i4i_A 156 VATPGRLVDMMERGKIG-LDFCKYLVLDEADRMLDM--GFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL 232 (417)
T ss_dssp EECHHHHHHHHHTTSBC-CTTCCEEEESSHHHHHHT--TCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC
T ss_pred EEChHHHHHHHHcCCcC-hhhCcEEEEEChhHhhcc--CcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc
Confidence 99999998876655444 678999999999999998 588887766221100111256899999999988777666666
Q ss_pred cCCccceee-ccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhc-cccceEEEecchHHHHHHHHHHhhCCCcEEEe
Q 036378 375 EIPLSNLIQ-KAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS-KHYYILQISGKHFETDLISRYLCDNSISVKSY 452 (815)
Q Consensus 375 ~~~~~~~~~-~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~ 452 (815)
..+....+. ......++...+....... ....+..++... ...+++|||++++.++.+++.|.+.|+.+..+
T Consensus 233 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 306 (417)
T 2i4i_A 233 DEYIFLAVGRVGSTSENITQKVVWVEESD------KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSI 306 (417)
T ss_dssp SSCEEEEEC----CCSSEEEEEEECCGGG------HHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEeCCCCCCccCceEEEEEeccHh------HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEe
Confidence 544322221 1223445555444433222 122333444443 56789999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHH
Q 036378 453 HSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYF 532 (815)
Q Consensus 453 h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~ 532 (815)
||+|+.++|.+++++|++|+.+|||||+++++|||+|++++||+|++|.+..+|+||+||+||.|+.|.|++|+++.|..
T Consensus 307 h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (417)
T 2i4i_A 307 HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 386 (417)
T ss_dssp CTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGG
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHhh
Q 036378 533 RLRSLM 538 (815)
Q Consensus 533 ~l~~~~ 538 (815)
.++.+.
T Consensus 387 ~~~~l~ 392 (417)
T 2i4i_A 387 ITKDLL 392 (417)
T ss_dssp GHHHHH
T ss_pred HHHHHH
Confidence 666554
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=3.3e-48 Score=436.51 Aligned_cols=344 Identities=21% Similarity=0.304 Sum_probs=275.2
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
..+|+++++++++++.+.. +||..|+|+|+++|+.++.|+++++++|||+|||++|++|++..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~ 101 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYA--------------YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI 101 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHH--------------HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT
T ss_pred CCCHhhcCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh
Confidence 3578999999999999998 79999999999999999999999999999999999999999853
Q ss_pred ---CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhh
Q 036378 241 ---PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312 (815)
Q Consensus 241 ---~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~ 312 (815)
+.++|||+|+++|+.|+++.+.++ +......++....+ ....+.. .++|+|+||++|.+.+......
T Consensus 102 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~-~~~ivv~Tp~~l~~~l~~~~~~- 176 (410)
T 2j0s_A 102 QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGE---DIRKLDY-GQHVVAGTPGRVFDMIRRRSLR- 176 (410)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHH---HHHHHHH-CCSEEEECHHHHHHHHHTTSSC-
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHH---HHHHhhc-CCCEEEcCHHHHHHHHHhCCcc-
Confidence 578999999999999999988762 23334444443333 3333443 4799999999998876655444
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeecc-ccCCCe
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA-QLRDNL 391 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~l 391 (815)
+..+++|||||||++.+| +|...+..+ ++...+..+++++|||++..+...+...+..+....+... ....++
T Consensus 177 ~~~~~~vViDEah~~~~~--~~~~~~~~i----~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (410)
T 2j0s_A 177 TRAIKMLVLDEADEMLNK--GFKEQIYDV----YRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGI 250 (410)
T ss_dssp CTTCCEEEEETHHHHTST--TTHHHHHHH----HTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTE
T ss_pred HhheeEEEEccHHHHHhh--hhHHHHHHH----HHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCc
Confidence 678999999999999987 566655444 4455567899999999998766544444443332222221 122333
Q ss_pred eEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC
Q 036378 392 QLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471 (815)
Q Consensus 392 ~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g 471 (815)
...+....... .....+..++......+++|||++++.++.+++.|.+.|+.+..+||+|+..+|.+++++|++|
T Consensus 251 ~~~~~~~~~~~-----~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 325 (410)
T 2j0s_A 251 KQFFVAVEREE-----WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 325 (410)
T ss_dssp EEEEEEESSTT-----HHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEEeCcHH-----hHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC
Confidence 33333322211 1233444555555677999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 472 KIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 472 ~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
+.+|||||+++++|||+|++++||+||+|.+.+.|+||+||+||.|+.|.|++|+++.|...++.+
T Consensus 326 ~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i 391 (410)
T 2j0s_A 326 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 391 (410)
T ss_dssp SSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHH
T ss_pred CCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998877755
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-48 Score=438.75 Aligned_cols=348 Identities=19% Similarity=0.271 Sum_probs=266.7
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH-----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----- 239 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~----- 239 (815)
.+|+++++++.+++.+.+ +||..|+++|+++|+.++.|+++++.+|||+|||++|++|++.
T Consensus 40 ~~f~~~~l~~~~~~~l~~--------------~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~ 105 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYA--------------YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 105 (414)
T ss_dssp CCGGGGCCCHHHHHHHHH--------------TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT
T ss_pred cCHhhCCCCHHHHHHHHH--------------cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc
Confidence 468889999999999998 7999999999999999999999999999999999999999985
Q ss_pred -cCCcEEEEcccHHHHHHHHHhcCCCce--eeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcc
Q 036378 240 -LPGLTLVVCPLVALMIDQLRHLPPVIH--GGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLI 316 (815)
Q Consensus 240 -~~~~~lVl~P~~~L~~q~~~~l~~~~~--~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i 316 (815)
.+.++||++|+++|+.|+.+.+.+... +..+....+..........+..+.++|+|+||++|.+.+...... +..+
T Consensus 106 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~-~~~~ 184 (414)
T 3eiq_A 106 LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLS-PKYI 184 (414)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSC-STTC
T ss_pred CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcc-cccC
Confidence 367899999999999999999987422 222223333344555566677678999999999998876665544 6789
Q ss_pred cEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeecc-ccCCCeeEEE
Q 036378 317 SLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA-QLRDNLQLSV 395 (815)
Q Consensus 317 ~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~v 395 (815)
++|||||||++.+| +|...+..+ +....+..++++||||++..+...+...+..+........ .....+....
T Consensus 185 ~~vViDEah~~~~~--~~~~~~~~~----~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (414)
T 3eiq_A 185 KMFVLDEADEMLSR--GFKDQIYDI----FQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFY 258 (414)
T ss_dssp CEEEECSHHHHHHT--TTHHHHHHH----HTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEE
T ss_pred cEEEEECHHHhhcc--CcHHHHHHH----HHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEE
Confidence 99999999999988 566555444 4555667899999999998887766665554433222221 1223333333
Q ss_pred EecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceE
Q 036378 396 SLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRV 475 (815)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~V 475 (815)
....... .....+..++......+++|||++++.++.+++.|...++.+..+||+|+..+|.++++.|++|+.+|
T Consensus 259 ~~~~~~~-----~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 333 (414)
T 3eiq_A 259 INVEREE-----WKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 333 (414)
T ss_dssp EECSSST-----THHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---C
T ss_pred EEeChHH-----hHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 2222221 12344556666667789999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 476 VVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 476 LVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
||||+++++|||+|++++||++++|.+..+|+||+||+||.|+.|.|++|+++.|...++.+.
T Consensus 334 lv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 396 (414)
T 3eiq_A 334 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 396 (414)
T ss_dssp EEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHH
T ss_pred EEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887776553
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.1e-48 Score=432.22 Aligned_cols=344 Identities=18% Similarity=0.246 Sum_probs=276.8
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
..+|+++++.+++++++.+ +||..|+|+|+++++.++.|+++++.+|||+|||++|++|++..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~ 85 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFE--------------AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP 85 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHH--------------TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT
T ss_pred cCChhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh
Confidence 4579999999999999998 79999999999999999999999999999999999999999853
Q ss_pred ---CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhh
Q 036378 241 ---PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312 (815)
Q Consensus 241 ---~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~ 312 (815)
+.++||++|+++|+.|+++.+.+. +......++..... .... ..+.++|+|+||++|.+........
T Consensus 86 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~-~~~~~~Ivv~T~~~l~~~~~~~~~~- 160 (400)
T 1s2m_A 86 KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRD---DILR-LNETVHILVGTPGRVLDLASRKVAD- 160 (400)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHH---HHHH-TTSCCSEEEECHHHHHHHHHTTCSC-
T ss_pred ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHH---HHHH-hcCCCCEEEEchHHHHHHHHhCCcc-
Confidence 558999999999999999988763 33334444443322 2222 2346899999999998765544433
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCee
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQ 392 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 392 (815)
+.++++|||||||++.+. +|+..+ ..++....+..+++++|||++..+...+...+..+....+.......++.
T Consensus 161 ~~~~~~vIiDEaH~~~~~--~~~~~~----~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (400)
T 1s2m_A 161 LSDCSLFIMDEADKMLSR--DFKTII----EQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGIT 234 (400)
T ss_dssp CTTCCEEEEESHHHHSSH--HHHHHH----HHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEE
T ss_pred cccCCEEEEeCchHhhhh--chHHHH----HHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCce
Confidence 678999999999999754 344433 33344445677999999999998888887777655433333333344444
Q ss_pred EEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 036378 393 LSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK 472 (815)
Q Consensus 393 ~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~ 472 (815)
......... .....+..++......+++|||++++.++.+++.|...|+.+..+||+|+..+|.++++.|++|+
T Consensus 235 ~~~~~~~~~------~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 308 (400)
T 1s2m_A 235 QYYAFVEER------QKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK 308 (400)
T ss_dssp EEEEECCGG------GHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred eEEEEechh------hHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC
Confidence 443333222 12333445555667789999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 473 IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 473 ~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
.+|||||+++++|||+|++++||++++|.+..+|+||+||+||.|+.|.|++|+++.|...++.+.
T Consensus 309 ~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~ 374 (400)
T 1s2m_A 309 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 374 (400)
T ss_dssp SSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHH
T ss_pred CcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988777654
No 10
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.5e-47 Score=428.00 Aligned_cols=337 Identities=17% Similarity=0.254 Sum_probs=272.6
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|+++++++++++.+.+ +||..|+|+|.++|+.++.|+++++.+|||+|||++|++|++..
T Consensus 8 ~~f~~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~ 73 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVD--------------CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV 73 (391)
T ss_dssp -CGGGGCCCHHHHHHHHH--------------HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC
T ss_pred CChhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc
Confidence 468999999999999998 79999999999999999999999999999999999999999865
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCC------ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhh
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPV------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~------~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~ 312 (815)
+.++||++|+++|+.|+.+.+.++ +....+.++..... ....+..+.++|+|+||++|..........
T Consensus 74 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~- 149 (391)
T 1xti_A 74 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK---DEEVLKKNCPHIVVGTPGRILALARNKSLN- 149 (391)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHH---HHHHHHHSCCSEEEECHHHHHHHHHTTSSC-
T ss_pred CCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCcc-
Confidence 558999999999999998887652 34445555554433 334455567899999999998865554444
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeecc--ccCCC
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA--QLRDN 390 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~~~~ 390 (815)
+.++++|||||||++.+| ++|+..+..+ +.......+++++|||++......+...+..+....+... ....+
T Consensus 150 ~~~~~~vViDEaH~~~~~-~~~~~~~~~~----~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (391)
T 1xti_A 150 LKHIKHFILDECDKMLEQ-LDMRRDVQEI----FRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHG 224 (391)
T ss_dssp CTTCSEEEECSHHHHTSS-HHHHHHHHHH----HHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTT
T ss_pred ccccCEEEEeCHHHHhhc-cchHHHHHHH----HhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCccc
Confidence 678999999999999875 3455555444 4555567899999999999888777777765443322211 12233
Q ss_pred eeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhc
Q 036378 391 LQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS 470 (815)
Q Consensus 391 l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~ 470 (815)
+...+....... ....+..++......+++|||++++.++.+++.|...|+.+..+||+|+..+|.++++.|++
T Consensus 225 ~~~~~~~~~~~~------~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 298 (391)
T 1xti_A 225 LQQYYVKLKDNE------KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 298 (391)
T ss_dssp CEEEEEECCGGG------HHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCchh------HHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Confidence 333333322221 22344455566677899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 471 NKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 471 g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
|+.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|+.|.|++|+++.+
T Consensus 299 ~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 299 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp TCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred CCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 999999999999999999999999999999999999999999999999999999998764
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.2e-46 Score=420.44 Aligned_cols=334 Identities=16% Similarity=0.217 Sum_probs=265.8
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCChhHHHHHHHHHHHc--
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMIL-- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g--~d~li~apTGsGKTl~~~lp~l~~-- 240 (815)
.+|+++++++++++.+.+ +||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..
T Consensus 5 ~~f~~~~l~~~l~~~l~~--------------~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~ 70 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYA--------------MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVN 70 (395)
T ss_dssp CSSTTSCCCHHHHHHHHH--------------TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred cCHhhCCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhc
Confidence 588999999999999999 79999999999999999998 899999999999999999999854
Q ss_pred ----CCcEEEEcccHHHHHHHHHhcCCCc-----eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh
Q 036378 241 ----PGLTLVVCPLVALMIDQLRHLPPVI-----HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311 (815)
Q Consensus 241 ----~~~~lVl~P~~~L~~q~~~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~ 311 (815)
++++|||+|+++|+.|+++.+.+.. ............ ....+++|+|+||++|.+........
T Consensus 71 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~T~~~l~~~~~~~~~~ 142 (395)
T 3pey_A 71 PEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK--------NKQINAQVIVGTPGTVLDLMRRKLMQ 142 (395)
T ss_dssp TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT--------TSCBCCSEEEECHHHHHHHHHTTCBC
T ss_pred cCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh--------hccCCCCEEEEcHHHHHHHHHcCCcc
Confidence 5689999999999999999887632 222222221110 11225899999999998766554444
Q ss_pred hcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeecc-ccCCC
Q 036378 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKA-QLRDN 390 (815)
Q Consensus 312 ~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~ 390 (815)
+.++++|||||||++.++ .+|...+..+ .+......+++++|||++..+...+...+..+........ .....
T Consensus 143 -~~~~~~iIiDEah~~~~~-~~~~~~~~~~----~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (395)
T 3pey_A 143 -LQKIKIFVLDEADNMLDQ-QGLGDQCIRV----KRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDA 216 (395)
T ss_dssp -CTTCCEEEEETHHHHHHS-TTHHHHHHHH----HHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTT
T ss_pred -cccCCEEEEEChhhhcCc-cccHHHHHHH----HHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccccccc
Confidence 778999999999999862 1455554443 4455567899999999998877766666654433322222 22233
Q ss_pred eeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhc
Q 036378 391 LQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCS 470 (815)
Q Consensus 391 l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~ 470 (815)
+.......... ......+..+.......+++|||++++.++.+++.|+..++.+..+||+|+..+|.+++++|++
T Consensus 217 ~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 291 (395)
T 3pey_A 217 IKQLYMDCKNE-----ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE 291 (395)
T ss_dssp EEEEEEECSSH-----HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred ccEEEEEcCch-----HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC
Confidence 33333332221 1223344455666677899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEccccccccccCCccEEEEeCCCC------CHHHHHHHHcccCCCCCCceEEEEeccccH
Q 036378 471 NKIRVVVATVAFGMGLDKRDVGAVIHYSLPE------SLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531 (815)
Q Consensus 471 g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~------s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~ 531 (815)
|+.+|||||+++++|||+|++++||+||+|. +..+|+||+||+||.|+.|.|++|+.+.+.
T Consensus 292 g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 292 GRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp TSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred CCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 9999999999999999999999999999999 999999999999999999999999987543
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.2e-46 Score=410.55 Aligned_cols=338 Identities=22% Similarity=0.345 Sum_probs=272.0
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDK-KSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g-~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
.+|+++++++.+++.+.+ +||..|+|+|+++|+.++++ +++++.+|||+|||++|++|++..
T Consensus 6 ~~f~~~~l~~~~~~~l~~--------------~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~ 71 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRN--------------KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE 71 (367)
T ss_dssp CCGGGSSCCHHHHHHHHH--------------HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS
T ss_pred CchhhcCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc
Confidence 478999999999999998 79999999999999999998 699999999999999999998864
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhc
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~ 313 (815)
+.++||++|+++|+.|+.+.+.+. +....+.++..... ....+. +.+|+|+||++|.+........ +
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~--~~~iiv~T~~~l~~~~~~~~~~-~ 145 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP---QIKALK--NANIVVGTPGRILDHINRGTLN-L 145 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHH---HHHHHH--TCSEEEECHHHHHHHHHTTCSC-T
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHH---HHhhcC--CCCEEEecHHHHHHHHHcCCcc-c
Confidence 678999999999999999999873 22333444443332 223333 5799999999998876554444 6
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeE
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQL 393 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 393 (815)
.++++|||||||++.+| +|...+..+ +.......+++++|||++......+...+..... + ......++..
T Consensus 146 ~~~~~iIiDEah~~~~~--~~~~~~~~~----~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ 216 (367)
T 1hv8_A 146 KNVKYFILDEADEMLNM--GFIKDVEKI----LNACNKDKRILLFSATMPREILNLAKKYMGDYSF--I-KAKINANIEQ 216 (367)
T ss_dssp TSCCEEEEETHHHHHTT--TTHHHHHHH----HHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEE--E-ECCSSSSSEE
T ss_pred ccCCEEEEeCchHhhhh--chHHHHHHH----HHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeE--E-EecCCCCceE
Confidence 78999999999999987 565555444 4455567899999999999887777776654321 1 1122233333
Q ss_pred EEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCc
Q 036378 394 SVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKI 473 (815)
Q Consensus 394 ~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~ 473 (815)
......... ....+..++. ....+++|||++++.++.+++.|.+.|+.+..+||+|+..+|.++++.|++|+.
T Consensus 217 ~~~~~~~~~------~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 289 (367)
T 1hv8_A 217 SYVEVNENE------RFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 289 (367)
T ss_dssp EEEECCGGG------HHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSS
T ss_pred EEEEeChHH------HHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCC
Confidence 333322211 2233333333 356789999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 474 RVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 474 ~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|++|.|++++++.|...++.+.
T Consensus 290 ~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~ 354 (367)
T 1hv8_A 290 RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIE 354 (367)
T ss_dssp SEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHH
T ss_pred eEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777664
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.6e-46 Score=419.56 Aligned_cols=342 Identities=17% Similarity=0.218 Sum_probs=267.0
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCChhHHHHHHHHHHHc-
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMIL- 240 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g--~d~li~apTGsGKTl~~~lp~l~~- 240 (815)
..+|+++++++.+++.+.+ +||..|+|+|.++|+.++.+ +++++++|||+|||++|++|++..
T Consensus 24 ~~~f~~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYA--------------MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHH--------------TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cCCHhhCCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHh
Confidence 3579999999999999998 79999999999999999997 899999999999999999999853
Q ss_pred -----CCcEEEEcccHHHHHHHHHhcCCC------ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhh
Q 036378 241 -----PGLTLVVCPLVALMIDQLRHLPPV------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309 (815)
Q Consensus 241 -----~~~~lVl~P~~~L~~q~~~~l~~~------~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~ 309 (815)
++++|||+|+++|+.|+.+.+.+. +............. .....++|+|+||++|.+.+....
T Consensus 90 ~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~~~l~~~~~~~~ 162 (412)
T 3fht_A 90 EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLK 162 (412)
T ss_dssp CTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSC
T ss_pred hhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEEEECchHHHHHHHhcC
Confidence 348999999999999997777652 22222222221111 112357999999999987654422
Q ss_pred hhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeec-cccC
Q 036378 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQK-AQLR 388 (815)
Q Consensus 310 ~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~ 388 (815)
...+.++++|||||||++.++. +|...+..+ .+......+++++|||++..+...+...+..+....+.. ....
T Consensus 163 ~~~~~~~~~iViDEah~~~~~~-~~~~~~~~~----~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (412)
T 3fht_A 163 FIDPKKIKVFVLDEADVMIATQ-GHQDQSIRI----QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETL 237 (412)
T ss_dssp SSCGGGCCEEEEETHHHHHSTT-TTHHHHHHH----HHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSC
T ss_pred CcChhhCcEEEEeCHHHHhhcC-CcHHHHHHH----HhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccc
Confidence 2225789999999999998631 455444433 445556779999999999988887777775544332222 2223
Q ss_pred CCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHH
Q 036378 389 DNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELF 468 (815)
Q Consensus 389 ~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F 468 (815)
..+.......... ......+..++......+++|||++++.++.+++.|...++.+..+||+|+..+|.++++.|
T Consensus 238 ~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 312 (412)
T 3fht_A 238 DTIKQYYVLCSSR-----DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 312 (412)
T ss_dssp TTEEEEEEECSSH-----HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred cCceEEEEEcCCh-----HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHH
Confidence 3343333333221 12334445556666778999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEccccccccccCCccEEEEeCCC------CCHHHHHHHHcccCCCCCCceEEEEecccc-HHHHHH
Q 036378 469 CSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ESLEEYVQEIGRAGRDGRLSYCHLFLDDIT-YFRLRS 536 (815)
Q Consensus 469 ~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P------~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d-~~~l~~ 536 (815)
++|+.+|||||+++++|||+|++++||+||+| .+..+|+||+||+||.|+.|.|++++++.+ ...++.
T Consensus 313 ~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 387 (412)
T 3fht_A 313 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 387 (412)
T ss_dssp HTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHH
T ss_pred HCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHH
Confidence 99999999999999999999999999999999 578999999999999999999999998764 444443
No 14
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.3e-47 Score=428.60 Aligned_cols=343 Identities=20% Similarity=0.285 Sum_probs=153.8
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|+++++++.+++.+.. +||..|+|+|+++++.++.|+++++.+|||+|||++|++|++..
T Consensus 21 ~~f~~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~ 86 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFG--------------YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS 86 (394)
T ss_dssp CSSGGGCCCHHHHHHHHH--------------HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT
T ss_pred CChhhcCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc
Confidence 468999999999999998 79999999999999999999999999999999999999999853
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhc
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~ 313 (815)
++++||++|+++|+.|+.+.+.+. +....+.++....+....+. +++|+|+||++|.......... +
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~-~ 160 (394)
T 1fuu_A 87 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFR-T 160 (394)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSC-C
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcc-h
Confidence 568999999999999999988652 34445555555444333332 4799999999998776554444 6
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccc-cCCCee
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQ-LRDNLQ 392 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~ 392 (815)
.++++|||||||++.+| +|+..+..+ +....+..+++++|||++......+...+..+......... ...++.
T Consensus 161 ~~~~~vIiDEah~~~~~--~~~~~~~~~----~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSS--GFKEQIYQI----FTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIK 234 (394)
T ss_dssp TTCCEEEEETHHHHHHT--TCHHHHHHH----HHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------
T ss_pred hhCcEEEEEChHHhhCC--CcHHHHHHH----HHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCce
Confidence 78999999999999887 677766555 44455677999999999998877777766554332222111 111221
Q ss_pred EEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 036378 393 LSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK 472 (815)
Q Consensus 393 ~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~ 472 (815)
.......... .....+..++......+++|||++++.++.+++.|.+.++.+..+||+|+..+|.++++.|++|+
T Consensus 235 ~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 309 (394)
T 1fuu_A 235 QFYVNVEEEE-----YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 309 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCchh-----hHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCC
Confidence 1111111110 11222334444456678999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 473 IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 473 ~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|++|.|++|+++.|...++.+.
T Consensus 310 ~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 375 (394)
T 1fuu_A 310 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 375 (394)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999877766554
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-45 Score=402.45 Aligned_cols=315 Identities=20% Similarity=0.267 Sum_probs=253.6
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCC-----ceeeeec
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLS 271 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~ 271 (815)
+||..|+|+|+++++.+++|+++++.+|||+|||++|++|++..+.++|||+|+++|+.|+++.+.+. .....+.
T Consensus 12 ~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 91 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVY 91 (337)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEEC
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999852 3344445
Q ss_pred cCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcc
Q 036378 272 SSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLN 351 (815)
Q Consensus 272 ~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~ 351 (815)
++...... ...+. .++|+|+||++|.+........ +.++++|||||||++.+| +|...+..+ +.....
T Consensus 92 ~~~~~~~~---~~~~~--~~~i~v~T~~~l~~~~~~~~~~-~~~~~~iViDEah~~~~~--~~~~~~~~~----~~~~~~ 159 (337)
T 2z0m_A 92 GGMPYKAQ---INRVR--NADIVVATPGRLLDLWSKGVID-LSSFEIVIIDEADLMFEM--GFIDDIKII----LAQTSN 159 (337)
T ss_dssp TTSCHHHH---HHHHT--TCSEEEECHHHHHHHHHTTSCC-GGGCSEEEEESHHHHHHT--TCHHHHHHH----HHHCTT
T ss_pred CCcchHHH---HhhcC--CCCEEEECHHHHHHHHHcCCcc-hhhCcEEEEEChHHhhcc--ccHHHHHHH----HhhCCc
Confidence 54444332 22232 4799999999998765544433 678999999999999988 565555444 445556
Q ss_pred cceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecc
Q 036378 352 VECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431 (815)
Q Consensus 352 ~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s 431 (815)
..+++++|||++......+...+.... .+.......++............. ....+......+++|||++
T Consensus 160 ~~~~~~~SAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~lvf~~~ 229 (337)
T 2z0m_A 160 RKITGLFSATIPEEIRKVVKDFITNYE--EIEACIGLANVEHKFVHVKDDWRS--------KVQALRENKDKGVIVFVRT 229 (337)
T ss_dssp CSEEEEEESCCCHHHHHHHHHHSCSCE--EEECSGGGGGEEEEEEECSSSSHH--------HHHHHHTCCCSSEEEECSC
T ss_pred ccEEEEEeCcCCHHHHHHHHHhcCCce--eeecccccCCceEEEEEeChHHHH--------HHHHHHhCCCCcEEEEEcC
Confidence 678899999999988877777665432 222223344444444443332221 1133444567889999999
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHc
Q 036378 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIG 511 (815)
Q Consensus 432 ~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~G 511 (815)
++.++.+++.|. .+..+||+|+..+|.+++++|++|+.+|||||+++++|||+|++++||++++|.|..+|+||+|
T Consensus 230 ~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~G 305 (337)
T 2z0m_A 230 RNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIG 305 (337)
T ss_dssp HHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHT
T ss_pred HHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcC
Confidence 999999999887 6889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 512 RAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 512 RaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
|+||.|++|.|++|+. .|...++.+.
T Consensus 306 R~gR~g~~g~~~~~~~-~~~~~~~~i~ 331 (337)
T 2z0m_A 306 RTGRMGRKGEAITFIL-NEYWLEKEVK 331 (337)
T ss_dssp TBCGGGCCEEEEEEES-SCHHHHHHHC
T ss_pred ccccCCCCceEEEEEe-CcHHHHHHHH
Confidence 9999999999999999 7776666653
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.4e-45 Score=413.99 Aligned_cols=322 Identities=18% Similarity=0.168 Sum_probs=252.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCC-
Q 036378 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPP- 263 (815)
Q Consensus 188 ~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~- 263 (815)
.+.+.+++.+|| +|+|+|.++|+.+++|+|+++++|||+|||++|++|++. .++++|||+||++|+.|+++.+.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHH
Confidence 355677888898 799999999999999999999999999999999999876 578999999999999999999987
Q ss_pred ---CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccc---------
Q 036378 264 ---VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWS--------- 331 (815)
Q Consensus 264 ---~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g--------- 331 (815)
.++...+.++....+....++.+..|.++|+|+||++|.+.+.. +. +.++++|||||||++++|+
T Consensus 88 ~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~-~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 88 ADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LS-QKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp CCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HT-TCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred ccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hc-cccccEEEEeChHhhhhccchhhhHHhh
Confidence 44667777888877778888888888899999999999876432 33 6689999999999999988
Q ss_pred cCchHHH-HHHHHHHHH------Hh--cccceeEeeecccCh-hHHHHHHH-HhcCCccceeeccccCCCeeEEEEecCC
Q 036378 332 HNFRPSY-MRLRASLLR------AR--LNVECILAMTATATT-TTLRDVMS-ALEIPLSNLIQKAQLRDNLQLSVSLSGN 400 (815)
Q Consensus 332 ~~fr~~~-~~i~~~~~~------~~--~~~~~vl~lSAT~~~-~~~~~i~~-~l~~~~~~~~~~~~~~~~l~~~v~~~~~ 400 (815)
++|++.+ ..+ ...+. .. ....+++++|||+.+ .....+.. .+.... ........++...+....
T Consensus 165 ~~~~~~~~~~i-~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~- 239 (414)
T 3oiy_A 165 VGIPEEIIRKA-FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV---GRLVSVARNITHVRISSR- 239 (414)
T ss_dssp TTCCHHHHHHH-HHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCS---SCCCCCCCSEEEEEESSC-
T ss_pred cCCcHHHHHHH-HHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCc---CccccccccchheeeccC-
Confidence 7888884 444 22222 00 156799999999544 33323333 223221 112223344444443331
Q ss_pred ccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEE-EecCCCCHHHHHHHHHHHhcCCceEEEE-
Q 036378 401 NRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVK-SYHSGIPAKDRSRIQELFCSNKIRVVVA- 478 (815)
Q Consensus 401 ~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~-~~h~~~~~~~R~~i~~~F~~g~~~VLVa- 478 (815)
....+..++.. .+.+++|||++++.++.+++.|...|+.+. .+||+ +|. +++|++|+++||||
T Consensus 240 --------~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat 304 (414)
T 3oiy_A 240 --------SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGV 304 (414)
T ss_dssp --------CHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEE
T ss_pred --------HHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEe
Confidence 11222333333 347899999999999999999999999998 99985 444 99999999999999
Q ss_pred ---ccccccccccCC-ccEEEEeCCC--CCHHHHHHHHcccCCCC----CCceEEEEeccccHHHHH
Q 036378 479 ---TVAFGMGLDKRD-VGAVIHYSLP--ESLEEYVQEIGRAGRDG----RLSYCHLFLDDITYFRLR 535 (815)
Q Consensus 479 ---T~~~~~GID~p~-v~~VI~~d~P--~s~~~y~Qr~GRaGR~g----~~g~~i~l~~~~d~~~l~ 535 (815)
|+++++|||+|+ |++||+||+| .+..+|+||+|||||.| +.|.|++|+ .|...++
T Consensus 305 ~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~ 369 (414)
T 3oiy_A 305 QAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFE 369 (414)
T ss_dssp CCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHH
T ss_pred cCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHH
Confidence 999999999999 9999999999 99999999999999988 589999999 4444433
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.5e-46 Score=431.92 Aligned_cols=341 Identities=17% Similarity=0.211 Sum_probs=143.7
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCChhHHHHHHHHHHHc-
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMIL- 240 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g--~d~li~apTGsGKTl~~~lp~l~~- 240 (815)
..+|+++++++++++.+.. +||..|+|+|.++|+.++.+ +++|+++|||||||++|++|++..
T Consensus 91 ~~~f~~~~l~~~l~~~l~~--------------~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYA--------------MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHH--------------TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred cCCHHHcCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 3589999999999999998 79999999999999999987 899999999999999999999854
Q ss_pred -----CCcEEEEcccHHHHHHHHHhcCCC------ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhh
Q 036378 241 -----PGLTLVVCPLVALMIDQLRHLPPV------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309 (815)
Q Consensus 241 -----~~~~lVl~P~~~L~~q~~~~l~~~------~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~ 309 (815)
.+++|||+|+++|+.|+++.+.+. +............ .......+|+|+||++|.+.+....
T Consensus 157 ~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~Tp~~l~~~l~~~~ 229 (479)
T 3fmp_B 157 EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLK 229 (479)
T ss_dssp CTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSC
T ss_pred hhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCEEEECchHHHHHHHhcC
Confidence 338999999999999997766542 2222222221111 0112357899999999987654433
Q ss_pred hhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccc-cC
Q 036378 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQ-LR 388 (815)
Q Consensus 310 ~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~~ 388 (815)
...+.++++|||||||+++++. +|...+. .+.+......+++++|||++..+.......+..+....+.... ..
T Consensus 230 ~~~~~~~~~iViDEah~~~~~~-~~~~~~~----~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 304 (479)
T 3fmp_B 230 FIDPKKIKVFVLDEADVMIATQ-GHQDQSI----RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETL 304 (479)
T ss_dssp CCCGGGCCEEEECCHHHHHTST-THHHHHH----HHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------
T ss_pred CcCcccCCEEEEECHHHHhhcC-CcHHHHH----HHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCc
Confidence 2236789999999999998621 4444443 3355556678999999999998877666666443322221111 11
Q ss_pred CCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHH
Q 036378 389 DNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELF 468 (815)
Q Consensus 389 ~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F 468 (815)
..+...+...... ......+..++......+++|||++++.++.+++.|...++.+..+||+|++.+|..+++.|
T Consensus 305 ~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f 379 (479)
T 3fmp_B 305 DTIKQYYVLCSSR-----DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 379 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEeCCH-----HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHH
Confidence 1111111111110 11122333444455667899999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEccccccccccCCccEEEEeCCC------CCHHHHHHHHcccCCCCCCceEEEEecccc-HHHHH
Q 036378 469 CSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ESLEEYVQEIGRAGRDGRLSYCHLFLDDIT-YFRLR 535 (815)
Q Consensus 469 ~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P------~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d-~~~l~ 535 (815)
++|+.+|||||+++++|||+|+|++||+||+| .+..+|+||+|||||.|+.|.|++|+++.+ ...++
T Consensus 380 ~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~ 453 (479)
T 3fmp_B 380 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILN 453 (479)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHH
Confidence 99999999999999999999999999999999 577899999999999999999999998764 44433
No 18
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-44 Score=413.24 Aligned_cols=332 Identities=14% Similarity=0.149 Sum_probs=218.3
Q ss_pred ccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCChhHHHHHHHHHHHc-----
Q 036378 168 SELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMIL----- 240 (815)
Q Consensus 168 ~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g--~d~li~apTGsGKTl~~~lp~l~~----- 240 (815)
...++.+++++.+.+ .||..|+++|.+||+.++++ +++++++|||||||++|++|++..
T Consensus 122 ~~~~l~~~~~~~l~~--------------~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~ 187 (508)
T 3fho_A 122 XXXXXXXXXXXXXXX--------------XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV 187 (508)
T ss_dssp -------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC
T ss_pred ccccccccccccccc--------------ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC
Confidence 344556666666665 69999999999999999998 899999999999999999999854
Q ss_pred -CCcEEEEcccHHHHHHHHHhcCCCceeee--eccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCccc
Q 036378 241 -PGLTLVVCPLVALMIDQLRHLPPVIHGGF--LSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLIS 317 (815)
Q Consensus 241 -~~~~lVl~P~~~L~~q~~~~l~~~~~~~~--i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~ 317 (815)
++++|||+|+++|+.|+++.+.+...... ......... ......+++|+|+||++|.+........ +.+++
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Ivv~T~~~l~~~l~~~~~~-~~~~~ 261 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSV-----PKGAKIDAQIVIGTPGTVMDLMKRRQLD-ARDIK 261 (508)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC---------------CCCCSEEEECHHHHHHHHHTTCSC-CTTCC
T ss_pred CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcc-----cccccCCCCEEEECHHHHHHHHHcCCcc-ccCCC
Confidence 45899999999999999999987432211 111111111 1112235899999999998866555444 67899
Q ss_pred EEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeec-cccCCCeeEEEE
Q 036378 318 LVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQK-AQLRDNLQLSVS 396 (815)
Q Consensus 318 ~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~v~ 396 (815)
+|||||||+++++ .+|...+..+ ........+++++|||++..........+..+....+.. ......+.....
T Consensus 262 lIIiDEaH~~~~~-~~~~~~~~~i----~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 336 (508)
T 3fho_A 262 VFVLDEADNMLDQ-QGLGDQSMRI----KHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYM 336 (508)
T ss_dssp EEEECCHHHHTTC---CHHHHHHH----HHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEE
T ss_pred EEEEechhhhccc-CCcHHHHHHH----HHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEE
Confidence 9999999999862 1455555444 444556789999999999877666655554433222211 111222222222
Q ss_pred ecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEE
Q 036378 397 LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476 (815)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VL 476 (815)
..... ......+..++......+++|||++++.++.+++.|.+.++.+..+||+|+..+|..+++.|++|+.+||
T Consensus 337 ~~~~~-----~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VL 411 (508)
T 3fho_A 337 DCQSE-----EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVL 411 (508)
T ss_dssp EC--C-----HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCC
T ss_pred ECCch-----HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEE
Confidence 22111 1122334455555677899999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccccCCccEEEEeCCC------CCHHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 477 VATVAFGMGLDKRDVGAVIHYSLP------ESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 477 VaT~~~~~GID~p~v~~VI~~d~P------~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
|||+++++|||+|++++||++++| .+..+|+||+||+||.|+.|.|++|+.+.
T Consensus 412 VaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 412 VTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp EECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred EeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 999999999999999999999999 88999999999999999999999999753
No 19
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.8e-41 Score=407.26 Aligned_cols=337 Identities=20% Similarity=0.232 Sum_probs=251.1
Q ss_pred cccccc--ccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH---Hc
Q 036378 166 TASELE--LVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM---IL 240 (815)
Q Consensus 166 ~~~~l~--l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l---~~ 240 (815)
+|++++ +++.+.+.+.+ +||..|+|+|.++++.+++++++++++|||||||++|.+|++ ..
T Consensus 2 ~f~~l~~~l~~~~~~~l~~--------------~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~ 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKE--------------EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHC--------------C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhccCHHHHHHHHh--------------CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 466777 78888887777 799999999999999999999999999999999999999987 34
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC----CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcc
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP----VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLI 316 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~----~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i 316 (815)
+++++|++|+++|+.|+++.++. +++.....+.....+. ..++++|+|+|||+|.......... +.++
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~-l~~~ 139 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASW-IKAV 139 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSG-GGGC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhH-Hhhc
Confidence 78999999999999999999854 2344444443322211 1236899999999998765543322 6789
Q ss_pred cEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEE
Q 036378 317 SLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVS 396 (815)
Q Consensus 317 ~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~ 396 (815)
++|||||||++.+| ++.+.+..++. .++...+..++++||||++. ..++.++++.+ .+.....+.++...+.
T Consensus 140 ~~vIiDE~H~l~~~--~r~~~~~~ll~-~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~~---~~~~~~r~~~l~~~~~ 211 (702)
T 2p6r_A 140 SCLVVDEIHLLDSE--KRGATLEILVT-KMRRMNKALRVIGLSATAPN--VTEIAEWLDAD---YYVSDWRPVPLVEGVL 211 (702)
T ss_dssp CEEEETTGGGGGCT--TTHHHHHHHHH-HHHHHCTTCEEEEEECCCTT--HHHHHHHTTCE---EEECCCCSSCEEEEEE
T ss_pred CEEEEeeeeecCCC--CcccHHHHHHH-HHHhcCcCceEEEECCCcCC--HHHHHHHhCCC---cccCCCCCccceEEEe
Confidence 99999999999986 34455555533 34444567899999999985 46678888643 2222222223322221
Q ss_pred ecCCcc--ch-----hhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhC------------------------
Q 036378 397 LSGNNR--QN-----ERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDN------------------------ 445 (815)
Q Consensus 397 ~~~~~~--~~-----~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~------------------------ 445 (815)
...... .. ........+.... ..+.+++|||++++.++.++..|.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~ 289 (702)
T 2p6r_A 212 CEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSR 289 (702)
T ss_dssp CSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHH
T ss_pred eCCeeeccCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccH
Confidence 111000 00 0000222222222 25689999999999999999988753
Q ss_pred ------CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE----eC---CCCCHHHHHHHHcc
Q 036378 446 ------SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH----YS---LPESLEEYVQEIGR 512 (815)
Q Consensus 446 ------g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~----~d---~P~s~~~y~Qr~GR 512 (815)
+..+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||+ || .|.|..+|.||+||
T Consensus 290 ~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GR 369 (702)
T 2p6r_A 290 KLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGR 369 (702)
T ss_dssp HHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTT
T ss_pred HHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhh
Confidence 246888999999999999999999999999999999999999999999999 77 78999999999999
Q ss_pred cCCCC--CCceEEEEeccccHHHH
Q 036378 513 AGRDG--RLSYCHLFLDDITYFRL 534 (815)
Q Consensus 513 aGR~g--~~g~~i~l~~~~d~~~l 534 (815)
|||.| .+|.|++++++.+...+
T Consensus 370 aGR~g~~~~G~~~~l~~~~~~~~~ 393 (702)
T 2p6r_A 370 AGRPGMDERGEAIIIVGKRDREIA 393 (702)
T ss_dssp BSCTTTCSCEEEEEECCGGGHHHH
T ss_pred cCCCCCCCCceEEEEecCccHHHH
Confidence 99998 47999999999886543
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-40 Score=399.40 Aligned_cols=330 Identities=20% Similarity=0.242 Sum_probs=245.8
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCChhHHHHHHHHHHH----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKM-VLDKKSTMLVLPTGAGKSLCYQIPAMI---- 239 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~-il~g~d~li~apTGsGKTl~~~lp~l~---- 239 (815)
.+|+++++++.+.+.+.. +||..|+|+|.++++. +.+++++++++|||||||++|.+|++.
T Consensus 8 ~~~~~l~l~~~~~~~l~~--------------~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~ 73 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKK--------------RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK 73 (715)
T ss_dssp CBGGGSSSCHHHHHHHHT--------------TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CcHHHcCCCHHHHHHHHh--------------CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 478999999999999988 7999999999999999 788999999999999999999999873
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC----CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCc
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP----VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSL 315 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~----~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~ 315 (815)
.+++++|++|+++|+.|+++.+.. ++......+.....+. .+ ++++|+|+|||+|.......... +.+
T Consensus 74 ~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~Tpe~l~~~~~~~~~~-l~~ 145 (715)
T 2va8_A 74 NGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL--KNYDIIITTYEKLDSLWRHRPEW-LNE 145 (715)
T ss_dssp SCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG--GGCSEEEECHHHHHHHHHHCCGG-GGG
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc--CCCCEEEEcHHHHHHHHhCChhH-hhc
Confidence 478999999999999999999854 2333344433322211 11 25899999999998865544332 678
Q ss_pred ccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEE
Q 036378 316 ISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSV 395 (815)
Q Consensus 316 i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v 395 (815)
+++|||||||++.++ .+.+.+..++.. ++ ..++++||||++. ..++.++++.+. +.......++...+
T Consensus 146 ~~~vIiDE~H~l~~~--~~~~~l~~i~~~-~~----~~~ii~lSATl~n--~~~~~~~l~~~~---~~~~~r~~~l~~~~ 213 (715)
T 2va8_A 146 VNYFVLDELHYLNDP--ERGPVVESVTIR-AK----RRNLLALSATISN--YKQIAKWLGAEP---VATNWRPVPLIEGV 213 (715)
T ss_dssp EEEEEECSGGGGGCT--TTHHHHHHHHHH-HH----TSEEEEEESCCTT--HHHHHHHHTCEE---EECCCCSSCEEEEE
T ss_pred cCEEEEechhhcCCc--ccchHHHHHHHh-cc----cCcEEEEcCCCCC--HHHHHHHhCCCc---cCCCCCCCCceEEE
Confidence 999999999999875 444444444222 21 6789999999975 356777886431 22221122222111
Q ss_pred ------------EecCCccchh--hhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCC---------------
Q 036378 396 ------------SLSGNNRQNE--RSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNS--------------- 446 (815)
Q Consensus 396 ------------~~~~~~~~~~--~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g--------------- 446 (815)
.......... .......+.... ..+.+++|||+++++++.+++.|.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 291 (715)
T 2va8_A 214 IYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILK 291 (715)
T ss_dssp EEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHH
T ss_pred EecCCcccceeeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHH
Confidence 1111100000 011222222222 256899999999999999999998642
Q ss_pred ---------------------CcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE----eC---
Q 036378 447 ---------------------ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH----YS--- 498 (815)
Q Consensus 447 ---------------------~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~----~d--- 498 (815)
..+.++||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||+ ||
T Consensus 292 ~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~ 371 (715)
T 2va8_A 292 QLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKI 371 (715)
T ss_dssp HHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC-------
T ss_pred HHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccC
Confidence 35899999999999999999999999999999999999999999999999 99
Q ss_pred ----CCCCHHHHHHHHcccCCCC--CCceEEEEecccc
Q 036378 499 ----LPESLEEYVQEIGRAGRDG--RLSYCHLFLDDIT 530 (815)
Q Consensus 499 ----~P~s~~~y~Qr~GRaGR~g--~~g~~i~l~~~~d 530 (815)
.|.|..+|.||+|||||.| .+|.|++++++.+
T Consensus 372 ~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 372 AGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp -------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 8999999999999999998 4799999998876
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.2e-41 Score=395.79 Aligned_cols=327 Identities=16% Similarity=0.215 Sum_probs=187.0
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc--------CCcEEEEcccHHHHHHHHHhcCCC----
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--------PGLTLVVCPLVALMIDQLRHLPPV---- 264 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--------~~~~lVl~P~~~L~~q~~~~l~~~---- 264 (815)
++..+|||+|.++|+.++.|+++++++|||+|||++|++|++.. ++++|||+|+++|+.|+++.+.+.
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 35568999999999999999999999999999999999999755 788999999999999999999873
Q ss_pred -ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHH
Q 036378 265 -IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRA 343 (815)
Q Consensus 265 -~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~ 343 (815)
+....+.++..... ....+.. .++|+|+||++|.+.+....+..+.++++|||||||++.+|+. |..+..
T Consensus 83 ~~~~~~~~g~~~~~~---~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-----~~~~~~ 153 (556)
T 4a2p_A 83 GYSVQGISGENFSNV---SVEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-----YNVLMT 153 (556)
T ss_dssp TCCEEECCCC--------CHHHHHH-HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-----HHHHHH
T ss_pred CceEEEEeCCCCcch---hHHHhhC-CCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-----HHHHHH
Confidence 33444444443222 1222222 3899999999998876655542377899999999999998742 444433
Q ss_pred HHHHHh----cccceeEeeecccChh----------HHHHHHHHhcCCccceee-------ccccCCCeeEEEEecCCcc
Q 036378 344 SLLRAR----LNVECILAMTATATTT----------TLRDVMSALEIPLSNLIQ-------KAQLRDNLQLSVSLSGNNR 402 (815)
Q Consensus 344 ~~~~~~----~~~~~vl~lSAT~~~~----------~~~~i~~~l~~~~~~~~~-------~~~~~~~l~~~v~~~~~~~ 402 (815)
.++... .+..++++||||+... ....+...+......... ....++.............
T Consensus 154 ~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (556)
T 4a2p_A 154 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHN 233 (556)
T ss_dssp HHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCC
T ss_pred HHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCC
Confidence 333332 3457899999999652 222333444322111100 0001111111111100000
Q ss_pred c---------------------------------h---------------------------------------------
Q 036378 403 Q---------------------------------N--------------------------------------------- 404 (815)
Q Consensus 403 ~---------------------------------~--------------------------------------------- 404 (815)
. .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (556)
T 4a2p_A 234 PFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYND 313 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 0 0
Q ss_pred -------------------------------------------------------hhhhhHHHHHHHHh----hccccce
Q 036378 405 -------------------------------------------------------ERSAYVDEVFSFHR----SSKHYYI 425 (815)
Q Consensus 405 -------------------------------------------------------~~~~~~~~l~~l~~----~~~~~~~ 425 (815)
....++..+..++. .....++
T Consensus 314 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~ 393 (556)
T 4a2p_A 314 ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRT 393 (556)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceE
Confidence 00001111222221 1456899
Q ss_pred EEEecchHHHHHHHHHHhhC------------CCcEEEecCCCCHHHHHHHHHHHhc-CCceEEEEccccccccccCCcc
Q 036378 426 LQISGKHFETDLISRYLCDN------------SISVKSYHSGIPAKDRSRIQELFCS-NKIRVVVATVAFGMGLDKRDVG 492 (815)
Q Consensus 426 ivf~~s~~~~e~l~~~L~~~------------g~~v~~~h~~~~~~~R~~i~~~F~~-g~~~VLVaT~~~~~GID~p~v~ 492 (815)
+|||+++..++.+++.|... |.....+||+|+..+|.+++++|++ |+++|||||+++++|||+|+|+
T Consensus 394 lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~ 473 (556)
T 4a2p_A 394 LLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN 473 (556)
T ss_dssp EEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------C
T ss_pred EEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCC
Confidence 99999999999999999876 5666777889999999999999999 9999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHH
Q 036378 493 AVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRL 534 (815)
Q Consensus 493 ~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l 534 (815)
+|||||+|+|+..|+||+|| ||. ++|.|++|+++.+....
T Consensus 474 ~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 474 LVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp EEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 99999999999999999999 999 89999999998776443
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7.3e-41 Score=403.16 Aligned_cols=333 Identities=21% Similarity=0.261 Sum_probs=250.9
Q ss_pred ccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCChhHHHHHHHHHHH----c
Q 036378 166 TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKM-VLDKKSTMLVLPTGAGKSLCYQIPAMI----L 240 (815)
Q Consensus 166 ~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~-il~g~d~li~apTGsGKTl~~~lp~l~----~ 240 (815)
+|+++++++.+.+.+.+ +||..|+|+|.++++. +..++++++++|||||||++|.+|++. .
T Consensus 2 ~f~~l~l~~~~~~~l~~--------------~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~ 67 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKE--------------RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ 67 (720)
T ss_dssp BGGGCCSCHHHHHHHHH--------------TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH
T ss_pred cHhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC
Confidence 58889999999998888 7999999999999998 889999999999999999999999873 4
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC----CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcc
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP----VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLI 316 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~----~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i 316 (815)
+++++|++|+++|+.|+++.+.+ ++....+.+....... ..++++|+|+|||+|.......... +.++
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~~~~~~~~-l~~~ 139 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE-------WLGKYDIIIATAEKFDSLLRHGSSW-IKDV 139 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG-------GGGGCSEEEECHHHHHHHHHHTCTT-GGGE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc-------ccCCCCEEEECHHHHHHHHHcChhh-hhcC
Confidence 78999999999999999999964 2344444444332221 1135899999999998765443322 6789
Q ss_pred cEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEE
Q 036378 317 SLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVS 396 (815)
Q Consensus 317 ~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~ 396 (815)
++|||||||++.+| ++.+.+..++. ......++++||||++. ..++.++++.. .+.....+.++...+.
T Consensus 140 ~~vIiDE~H~l~~~--~r~~~~~~ll~----~l~~~~~ii~lSATl~n--~~~~~~~l~~~---~~~~~~rp~~l~~~~~ 208 (720)
T 2zj8_A 140 KILVADEIHLIGSR--DRGATLEVILA----HMLGKAQIIGLSATIGN--PEELAEWLNAE---LIVSDWRPVKLRRGVF 208 (720)
T ss_dssp EEEEEETGGGGGCT--TTHHHHHHHHH----HHBTTBEEEEEECCCSC--HHHHHHHTTEE---EEECCCCSSEEEEEEE
T ss_pred CEEEEECCcccCCC--cccHHHHHHHH----HhhcCCeEEEEcCCcCC--HHHHHHHhCCc---ccCCCCCCCcceEEEE
Confidence 99999999999876 34444444422 22236899999999975 36677887642 1222222222222111
Q ss_pred ecC-----CccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhC------------------C-------
Q 036378 397 LSG-----NNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDN------------------S------- 446 (815)
Q Consensus 397 ~~~-----~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~------------------g------- 446 (815)
... .............+.... ..+.+++|||++++.++.++..|.+. +
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 286 (720)
T 2zj8_A 209 YQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTN 286 (720)
T ss_dssp ETTEEEETTSCEEECSSTTHHHHHHH--HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHH
T ss_pred eCCeeeccccchhhhhHHHHHHHHHH--hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccch
Confidence 110 000000111122222222 24689999999999999999998753 1
Q ss_pred --------CcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE----eC----CCCCHHHHHHHH
Q 036378 447 --------ISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH----YS----LPESLEEYVQEI 510 (815)
Q Consensus 447 --------~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~----~d----~P~s~~~y~Qr~ 510 (815)
..+..+||+|+.++|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+||+
T Consensus 287 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~ 366 (720)
T 2zj8_A 287 EKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQML 366 (720)
T ss_dssp HHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHH
T ss_pred HHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHH
Confidence 24999999999999999999999999999999999999999999999999 77 589999999999
Q ss_pred cccCCCC--CCceEEEEeccccHHH
Q 036378 511 GRAGRDG--RLSYCHLFLDDITYFR 533 (815)
Q Consensus 511 GRaGR~g--~~g~~i~l~~~~d~~~ 533 (815)
|||||.| ..|.|++++++.+...
T Consensus 367 GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 367 GRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp TTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred hhcCCCCCCCCceEEEEecCccHHH
Confidence 9999998 4799999999888543
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-41 Score=417.21 Aligned_cols=322 Identities=16% Similarity=0.128 Sum_probs=239.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccC
Q 036378 198 GYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSS 273 (815)
Q Consensus 198 g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~ 273 (815)
++..|+|+|.+||+.++.|+++|++||||||||++|++|++.. ++++||++|+++|+.|+++.+.+ +...+.+.+.
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd 260 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGD 260 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCc
Confidence 5557999999999999999999999999999999999998754 88999999999999999999998 3344445554
Q ss_pred CChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccc
Q 036378 274 QRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVE 353 (815)
Q Consensus 274 ~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~ 353 (815)
.. ..++++|+|+||++|.+.+...... +.++++|||||||++.+| +|...+..+ +.......
T Consensus 261 ~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~-l~~l~lVVIDEaH~l~d~--~rg~~~e~i----i~~l~~~~ 322 (1108)
T 3l9o_A 261 IT-----------INPDAGCLVMTTEILRSMLYRGSEV-MREVAWVIFDEVHYMRDK--ERGVVWEET----IILLPDKV 322 (1108)
T ss_dssp CB-----------CCCSCSEEEEEHHHHHHHHHHCSSH-HHHEEEEEEETGGGTTSH--HHHHHHHHH----HHHSCTTS
T ss_pred cc-----------cCCCCCEEEeChHHHHHHHHcCccc-cccCCEEEEhhhhhcccc--chHHHHHHH----HHhcCCCc
Confidence 43 2346899999999999877665544 678999999999999988 455555554 44456678
Q ss_pred eeEeeecccChhHHHHHHHHh---cCCccceeeccccCCCeeEEEEecCCcc---------c---h--------------
Q 036378 354 CILAMTATATTTTLRDVMSAL---EIPLSNLIQKAQLRDNLQLSVSLSGNNR---------Q---N-------------- 404 (815)
Q Consensus 354 ~vl~lSAT~~~~~~~~i~~~l---~~~~~~~~~~~~~~~~l~~~v~~~~~~~---------~---~-------------- 404 (815)
++++||||++... ++..++ ......++.....+.++...+....... . .
T Consensus 323 qvl~lSATipn~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~ 400 (1108)
T 3l9o_A 323 RYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 400 (1108)
T ss_dssp EEEEEECSCSSCH--HHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----
T ss_pred eEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhc
Confidence 9999999986642 223332 2222233333333334433332211000 0 0
Q ss_pred --------------------h---hhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCc-------------
Q 036378 405 --------------------E---RSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSIS------------- 448 (815)
Q Consensus 405 --------------------~---~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~------------- 448 (815)
. ....+..+...+......+++|||++++.|+.++..|...++.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 480 (1108)
T 3l9o_A 401 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 480 (1108)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGG
T ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 0 0111222233333445678999999999999999998754332
Q ss_pred --------------------------EEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCC---
Q 036378 449 --------------------------VKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSL--- 499 (815)
Q Consensus 449 --------------------------v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~--- 499 (815)
+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|++++||+++.
T Consensus 481 ~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d 560 (1108)
T 3l9o_A 481 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWD 560 (1108)
T ss_dssp GSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEES
T ss_pred HHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccC
Confidence 799999999999999999999999999999999999999999999997765
Q ss_pred -----CCCHHHHHHHHcccCCCC--CCceEEEEeccc-cHHHHHHhhh
Q 036378 500 -----PESLEEYVQEIGRAGRDG--RLSYCHLFLDDI-TYFRLRSLMY 539 (815)
Q Consensus 500 -----P~s~~~y~Qr~GRaGR~g--~~g~~i~l~~~~-d~~~l~~~~~ 539 (815)
|.|..+|+||+|||||.| ..|.|++++++. +...++.++.
T Consensus 561 ~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 561 GQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp SSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred ccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 347888999999999999 689999999876 4555666654
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.4e-41 Score=404.43 Aligned_cols=328 Identities=16% Similarity=0.199 Sum_probs=204.8
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc--------CCcEEEEcccHHHHHHHHHhcCCC----
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--------PGLTLVVCPLVALMIDQLRHLPPV---- 264 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--------~~~~lVl~P~~~L~~q~~~~l~~~---- 264 (815)
+||..|||+|.++|+.++.|+++|+++|||+|||++|++|++.. ++++|||+||++|+.|+++.+.+.
T Consensus 9 ~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~ 88 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERH 88 (696)
T ss_dssp TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccC
Confidence 79999999999999999999999999999999999999999743 278999999999999999998763
Q ss_pred -ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHH
Q 036378 265 -IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRA 343 (815)
Q Consensus 265 -~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~ 343 (815)
+....+.++....... ..+.. .++|+|+||++|.+.+....+..+.++++|||||||++..+. .|..+..
T Consensus 89 ~~~v~~~~g~~~~~~~~---~~~~~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~-----~~~~i~~ 159 (696)
T 2ykg_A 89 GYRVTGISGATAENVPV---EQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH-----PYNMIMF 159 (696)
T ss_dssp TCCEEEECSSSCSSSCH---HHHHH-TCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC-----HHHHHHH
T ss_pred CceEEEEeCCccccccH---HHhcc-CCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc-----cHHHHHH
Confidence 4445555554332211 12222 489999999999887666544236789999999999998542 4555544
Q ss_pred HHHHHh-----cccceeEeeecccC-------hhHHHHHHHHhcCCccceeecc---------c-cCCCeeEEEEec---
Q 036378 344 SLLRAR-----LNVECILAMTATAT-------TTTLRDVMSALEIPLSNLIQKA---------Q-LRDNLQLSVSLS--- 398 (815)
Q Consensus 344 ~~~~~~-----~~~~~vl~lSAT~~-------~~~~~~i~~~l~~~~~~~~~~~---------~-~~~~l~~~v~~~--- 398 (815)
.++... .+.+++++||||+. .+....+...+.......+... . ..+...+.....
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 444432 25679999999998 4555555544321100000000 0 000000000000
Q ss_pred ----------------------------------------------------------C--C------------------
Q 036378 399 ----------------------------------------------------------G--N------------------ 400 (815)
Q Consensus 399 ----------------------------------------------------------~--~------------------ 400 (815)
. .
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 0 0
Q ss_pred ----------c-------------------cch------------------------hhhhhHHHHHHHHhhc----ccc
Q 036378 401 ----------N-------------------RQN------------------------ERSAYVDEVFSFHRSS----KHY 423 (815)
Q Consensus 401 ----------~-------------------~~~------------------------~~~~~~~~l~~l~~~~----~~~ 423 (815)
. ... .....+..+..++... ...
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 0 000 0011222233333332 567
Q ss_pred ceEEEecchHHHHHHHHHHhhCC----CcEEEe--------cCCCCHHHHHHHHHHHhc-CCceEEEEccccccccccCC
Q 036378 424 YILQISGKHFETDLISRYLCDNS----ISVKSY--------HSGIPAKDRSRIQELFCS-NKIRVVVATVAFGMGLDKRD 490 (815)
Q Consensus 424 ~~ivf~~s~~~~e~l~~~L~~~g----~~v~~~--------h~~~~~~~R~~i~~~F~~-g~~~VLVaT~~~~~GID~p~ 490 (815)
+++|||+++..++.+++.|...| +.+..+ ||+|+.++|.+++++|++ |+.+|||||+++++|||+|+
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCcc
Confidence 89999999999999999999988 888888 559999999999999998 99999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHH
Q 036378 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLR 535 (815)
Q Consensus 491 v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~ 535 (815)
|++|||||+|.+.++|+||+|| ||. +.|.|++|++..+.....
T Consensus 480 v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 480 CNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp CSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHH
Confidence 9999999999999999999999 998 789999999988775443
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.3e-40 Score=408.71 Aligned_cols=290 Identities=17% Similarity=0.170 Sum_probs=224.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCCC
Q 036378 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPPV 264 (815)
Q Consensus 188 ~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~~ 264 (815)
.+.+.++..+|| +|+|+|.++|+.++.|+|++++||||||||++|++|++. .++++|||+||++|+.|+++.+.++
T Consensus 66 ~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 345667777899 699999999999999999999999999999999888765 5889999999999999999999883
Q ss_pred ----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccc---------
Q 036378 265 ----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWS--------- 331 (815)
Q Consensus 265 ----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g--------- 331 (815)
+....+.++....+....++.+..|.++|+|+||++|.+.+.. +. +.++++|||||||++++++
T Consensus 145 ~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~-~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 145 ADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LS-QKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp SCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HH-TSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hc-ccCcCEEEEeCCCccccccccchhhhHh
Confidence 4667788888887878888899999899999999999776543 33 6789999999999887644
Q ss_pred cCchHH-HHHHHHHHHH------Hhc--ccceeEeeecccChhH-HHHHHH-HhcCCccceeeccccCCCeeEEEEecCC
Q 036378 332 HNFRPS-YMRLRASLLR------ARL--NVECILAMTATATTTT-LRDVMS-ALEIPLSNLIQKAQLRDNLQLSVSLSGN 400 (815)
Q Consensus 332 ~~fr~~-~~~i~~~~~~------~~~--~~~~vl~lSAT~~~~~-~~~i~~-~l~~~~~~~~~~~~~~~~l~~~v~~~~~ 400 (815)
.+|.+. +..+... +. ... ...|++++|||+.+.. ...+.. .+.+. +........++...+....
T Consensus 222 ~gf~~~~i~~il~~-l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~---v~~~~~~~~~i~~~~~~~~- 296 (1104)
T 4ddu_A 222 VGIPEEIIRKAFST-IKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT---VGRLVSVARNITHVRISSR- 296 (1104)
T ss_dssp SSCCHHHHHHHHHH-HHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCC---CCBCCCCCCCEEEEEESCC-
T ss_pred cCCCHHHHHHHHHh-cccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEE---eccCCCCcCCceeEEEecC-
Confidence 367776 4444222 21 000 5679999999954433 222322 23321 1222333455555444331
Q ss_pred ccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEE-EecCCCCHHHHHHHHHHHhcCCceEEEE-
Q 036378 401 NRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVK-SYHSGIPAKDRSRIQELFCSNKIRVVVA- 478 (815)
Q Consensus 401 ~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~-~~h~~~~~~~R~~i~~~F~~g~~~VLVa- 478 (815)
. ...+..++.. .+.+++|||++++.++.+++.|...|+.+. .+|| +|.+ +++|++|+.+||||
T Consensus 297 k--------~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVat 361 (1104)
T 4ddu_A 297 S--------KEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGV 361 (1104)
T ss_dssp C--------HHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEE
T ss_pred H--------HHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEe
Confidence 1 1122233333 347999999999999999999999999998 9999 2555 99999999999999
Q ss_pred ---ccccccccccCC-ccEEEEeCCCC
Q 036378 479 ---TVAFGMGLDKRD-VGAVIHYSLPE 501 (815)
Q Consensus 479 ---T~~~~~GID~p~-v~~VI~~d~P~ 501 (815)
|++++||||+|+ |++|||||+|.
T Consensus 362 as~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 362 QAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred cCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999998
No 26
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.5e-40 Score=406.55 Aligned_cols=321 Identities=17% Similarity=0.218 Sum_probs=244.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCCCc---eeeee
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPPVI---HGGFL 270 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~~~---~~~~i 270 (815)
|+|. |+|+|.++|+.+++|++++++||||||||+||++++.. .++++||++|+++|+.|+++.+.+.+ ....+
T Consensus 36 ~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l 114 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLI 114 (997)
T ss_dssp CSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEE
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 7776 89999999999999999999999999999999888763 47789999999999999999999843 45555
Q ss_pred ccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhc
Q 036378 271 SSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARL 350 (815)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~ 350 (815)
.+... ..++++|+|+||++|.+.+...... +.++++|||||||++++|+ |...+..+ +....
T Consensus 115 ~G~~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~-l~~l~lvViDEaH~l~d~~--~g~~~e~i----i~~l~ 176 (997)
T 4a4z_A 115 TGDVQ-----------INPDANCLIMTTEILRSMLYRGADL-IRDVEFVIFDEVHYVNDQD--RGVVWEEV----IIMLP 176 (997)
T ss_dssp CSSCE-----------ECTTSSEEEEEHHHHHHHHHHTCSG-GGGEEEEEECCTTCCCTTC--TTCCHHHH----HHHSC
T ss_pred eCCCc-----------cCCCCCEEEECHHHHHHHHHhCchh-hcCCCEEEEECcccccccc--hHHHHHHH----HHhcc
Confidence 55443 2346899999999998877655444 6789999999999999995 44445554 34455
Q ss_pred ccceeEeeecccChhHHHHHHHHhcC---CccceeeccccCCCeeEEEEecCC-------ccc-----------------
Q 036378 351 NVECILAMTATATTTTLRDVMSALEI---PLSNLIQKAQLRDNLQLSVSLSGN-------NRQ----------------- 403 (815)
Q Consensus 351 ~~~~vl~lSAT~~~~~~~~i~~~l~~---~~~~~~~~~~~~~~l~~~v~~~~~-------~~~----------------- 403 (815)
+..++++||||++... ++..++.. ....++.....+.++...+..... ...
T Consensus 177 ~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (997)
T 4a4z_A 177 QHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGES 254 (997)
T ss_dssp TTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---
T ss_pred cCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccc
Confidence 6789999999987654 46666642 222334444444444433321000 000
Q ss_pred ---------------------------h------------------------------------hhhhhHHHHHHHHhhc
Q 036378 404 ---------------------------N------------------------------------ERSAYVDEVFSFHRSS 420 (815)
Q Consensus 404 ---------------------------~------------------------------------~~~~~~~~l~~l~~~~ 420 (815)
. .....+..+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~ 334 (997)
T 4a4z_A 255 AKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR 334 (997)
T ss_dssp --------------------------------------------------------------CCCCTTHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC
Confidence 0 0001123344445555
Q ss_pred cccceEEEecchHHHHHHHHHHhhCCC---------------------------------------cEEEecCCCCHHHH
Q 036378 421 KHYYILQISGKHFETDLISRYLCDNSI---------------------------------------SVKSYHSGIPAKDR 461 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~g~---------------------------------------~v~~~h~~~~~~~R 461 (815)
...+++|||++++.|+.++..|...++ .+..+||+|++.+|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 667999999999999999999987766 58999999999999
Q ss_pred HHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCC---------CHHHHHHHHcccCCCC--CCceEEEEe--cc
Q 036378 462 SRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPE---------SLEEYVQEIGRAGRDG--RLSYCHLFL--DD 528 (815)
Q Consensus 462 ~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~---------s~~~y~Qr~GRaGR~g--~~g~~i~l~--~~ 528 (815)
..+++.|.+|.++|||||++++||||+|+ +.||++++|+ |..+|+||+|||||.| ..|.|++++ ..
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~ 493 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSP 493 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSC
T ss_pred HHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCc
Confidence 99999999999999999999999999999 7777766666 9999999999999998 568899888 34
Q ss_pred ccHHHHHHhhh
Q 036378 529 ITYFRLRSLMY 539 (815)
Q Consensus 529 ~d~~~l~~~~~ 539 (815)
.+...++.++.
T Consensus 494 ~~~~~~~~~i~ 504 (997)
T 4a4z_A 494 LSIATFKEVTM 504 (997)
T ss_dssp CCHHHHHHHHH
T ss_pred chHHHHHHHhc
Confidence 45666666643
No 27
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.7e-41 Score=402.99 Aligned_cols=322 Identities=17% Similarity=0.195 Sum_probs=216.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----C----CcEEEEcccHHHHHHH-HHhcCCC----c
Q 036378 200 DSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-----P----GLTLVVCPLVALMIDQ-LRHLPPV----I 265 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-----~----~~~lVl~P~~~L~~q~-~~~l~~~----~ 265 (815)
-.|+|+|.++|+.++.|+++|+.+|||+|||++|++|++.. . +++|||+|+++|+.|+ ++.+.+. +
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~ 85 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWY 85 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTS
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCc
Confidence 36999999999999999999999999999999999999753 2 8899999999999999 9999873 4
Q ss_pred eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhh------hhhhhhcCcccEEEEeccccccccccCchHHHH
Q 036378 266 HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF------LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYM 339 (815)
Q Consensus 266 ~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~------~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~ 339 (815)
....+.+.....+....+ . +.++|+|+||++|.+.+. ...+. +..+++|||||||++. +++.++....
T Consensus 86 ~v~~~~g~~~~~~~~~~~---~-~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~-~~~~~lvViDEaH~~~-~~~~~~~i~~ 159 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEV---V-KSCDIIISTAQILENSLLNLENGEDAGVQ-LSDFSLIIIDECHHTN-KEAVYNNIMR 159 (699)
T ss_dssp CEEEEC----CCCCHHHH---H-HSCSEEEEEHHHHHHHTC--------CCC-GGGCSEEEEESGGGCB-TTBSSCSHHH
T ss_pred eEEEEeCCcchhhHHHhh---h-cCCCEEEECHHHHHHHHhcccccccccee-cccCcEEEEECccccC-ccchHHHHHH
Confidence 555565554433222221 1 368999999999987653 22233 6689999999999984 3334443333
Q ss_pred HHHHHHHHHhc---------ccceeEeeecccChh-------HHHHHH---HHhcCCccce-------eeccccCCCeeE
Q 036378 340 RLRASLLRARL---------NVECILAMTATATTT-------TLRDVM---SALEIPLSNL-------IQKAQLRDNLQL 393 (815)
Q Consensus 340 ~i~~~~~~~~~---------~~~~vl~lSAT~~~~-------~~~~i~---~~l~~~~~~~-------~~~~~~~~~l~~ 393 (815)
......++... +.+++++||||+... ....+. ..+....... +.....+++..+
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 22222222222 567899999999973 333333 3333311110 001111222222
Q ss_pred EEEecCCccc----------------------------------------------------------------------
Q 036378 394 SVSLSGNNRQ---------------------------------------------------------------------- 403 (815)
Q Consensus 394 ~v~~~~~~~~---------------------------------------------------------------------- 403 (815)
..........
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211100000
Q ss_pred -------------------------------------------------------------hhhhhhHHHHHHHHhhcc-
Q 036378 404 -------------------------------------------------------------NERSAYVDEVFSFHRSSK- 421 (815)
Q Consensus 404 -------------------------------------------------------------~~~~~~~~~l~~l~~~~~- 421 (815)
.........+........
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 000000011111111112
Q ss_pred ccceEEEecchHHHHHHHHHHhhC------CCcEEEecCC--------CCHHHHHHHHHHHhcCCceEEEEccccccccc
Q 036378 422 HYYILQISGKHFETDLISRYLCDN------SISVKSYHSG--------IPAKDRSRIQELFCSNKIRVVVATVAFGMGLD 487 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~------g~~v~~~h~~--------~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID 487 (815)
..+++|||++++.++.+++.|... |+.+..+||+ |+..+|.+++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 689999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred cCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 488 KRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 488 ~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
+|+|++|||||+|+|++.|+||+|||||+| +.+++++...
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999999999988876 4444554433
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.4e-40 Score=384.45 Aligned_cols=323 Identities=16% Similarity=0.211 Sum_probs=211.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc--------CCcEEEEcccHHHHHHHHHhcCCC-----cee
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--------PGLTLVVCPLVALMIDQLRHLPPV-----IHG 267 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--------~~~~lVl~P~~~L~~q~~~~l~~~-----~~~ 267 (815)
+|||+|.++|+.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+++.+.+. +..
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 6999999999999999999999999999999999999754 788999999999999999999873 344
Q ss_pred eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHH
Q 036378 268 GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR 347 (815)
Q Consensus 268 ~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~ 347 (815)
..+.++....... ..+.. .++|+|+||++|...+....+..+.++++|||||||++..++ .|..+....+.
T Consensus 84 ~~~~g~~~~~~~~---~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-----~~~~~~~~~~~ 154 (555)
T 3tbk_A 84 ASISGATSDSVSV---QHIIE-DNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH-----PYNQIMFRYLD 154 (555)
T ss_dssp EEECTTTGGGSCH---HHHHH-HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC-----HHHHHHHHHHH
T ss_pred EEEcCCCcchhhH---HHHhc-CCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc-----hHHHHHHHHHH
Confidence 5555554333221 12222 389999999999887665544236789999999999998653 25555444443
Q ss_pred Hh-----cccceeEeeecccChh----------HHHHHHHHhcCCccceee-------ccccCCCeeEEEEecCCccc--
Q 036378 348 AR-----LNVECILAMTATATTT----------TLRDVMSALEIPLSNLIQ-------KAQLRDNLQLSVSLSGNNRQ-- 403 (815)
Q Consensus 348 ~~-----~~~~~vl~lSAT~~~~----------~~~~i~~~l~~~~~~~~~-------~~~~~~~l~~~v~~~~~~~~-- 403 (815)
.. .+..++++||||+... ....+...+......... ....++...+..........
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 32 2456899999999653 222334444422111110 11111222221111000000
Q ss_pred ---------------------------------------h----------------------------------------
Q 036378 404 ---------------------------------------N---------------------------------------- 404 (815)
Q Consensus 404 ---------------------------------------~---------------------------------------- 404 (815)
.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDAL 314 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -----------------------------------------------------hhhhhHHHHHHHHh----hccccceEE
Q 036378 405 -----------------------------------------------------ERSAYVDEVFSFHR----SSKHYYILQ 427 (815)
Q Consensus 405 -----------------------------------------------------~~~~~~~~l~~l~~----~~~~~~~iv 427 (815)
.....+..+..++. .....+++|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lV 394 (555)
T 3tbk_A 315 IISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTIL 394 (555)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEE
Confidence 00011112222221 234589999
Q ss_pred EecchHHHHHHHHHHhhCC------------CcEEEecCCCCHHHHHHHHHHHhc-CCceEEEEccccccccccCCccEE
Q 036378 428 ISGKHFETDLISRYLCDNS------------ISVKSYHSGIPAKDRSRIQELFCS-NKIRVVVATVAFGMGLDKRDVGAV 494 (815)
Q Consensus 428 f~~s~~~~e~l~~~L~~~g------------~~v~~~h~~~~~~~R~~i~~~F~~-g~~~VLVaT~~~~~GID~p~v~~V 494 (815)
||+++..++.+++.|...+ .....+||+|+.++|.+++++|++ |+++|||||+++++|||+|+|++|
T Consensus 395 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~V 474 (555)
T 3tbk_A 395 FVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLV 474 (555)
T ss_dssp ECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEE
T ss_pred EeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEE
Confidence 9999999999999999864 345556679999999999999999 999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHH
Q 036378 495 IHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRL 534 (815)
Q Consensus 495 I~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l 534 (815)
||||+|+|+..|+||+|| ||. +.|.|++|+++.+....
T Consensus 475 I~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 475 ILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp EEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred EEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 999999999999999999 999 89999999998876544
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=9.3e-40 Score=397.45 Aligned_cols=327 Identities=16% Similarity=0.230 Sum_probs=194.5
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc--------CCcEEEEcccHHHHHHHHHhcCCC---
Q 036378 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--------PGLTLVVCPLVALMIDQLRHLPPV--- 264 (815)
Q Consensus 196 ~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--------~~~~lVl~P~~~L~~q~~~~l~~~--- 264 (815)
.+|+..|||+|.++|+.++.|+++|+++|||+|||++|++|++.. ++++|||+|+++|+.|+++.+.+.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 478999999999999999999999999999999999999999755 789999999999999999998873
Q ss_pred --ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHH
Q 036378 265 --IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR 342 (815)
Q Consensus 265 --~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~ 342 (815)
+....+.++...... ...+.. +++|+|+||++|.+.+....+..+.++++|||||||++...+ .|..+.
T Consensus 323 ~~~~v~~~~g~~~~~~~---~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~-----~~~~i~ 393 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVS---VEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-----PYNVLM 393 (797)
T ss_dssp GTCCEEEECCC-----C---HHHHHH-TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS-----HHHHHH
T ss_pred CCceEEEEeCCcchhhh---HHHhhC-CCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc-----cHHHHH
Confidence 344555555433222 222222 489999999999887665544236789999999999998532 255554
Q ss_pred HHHHHHh----cccceeEeeecccCh----------hHHHHHHHHhcCCccceee-------ccccCCCeeEEEEecCC-
Q 036378 343 ASLLRAR----LNVECILAMTATATT----------TTLRDVMSALEIPLSNLIQ-------KAQLRDNLQLSVSLSGN- 400 (815)
Q Consensus 343 ~~~~~~~----~~~~~vl~lSAT~~~----------~~~~~i~~~l~~~~~~~~~-------~~~~~~~l~~~v~~~~~- 400 (815)
..++... .+..++++||||+.. +....+...++........ ....++...+.......
T Consensus 394 ~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 473 (797)
T 4a2q_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH 473 (797)
T ss_dssp HHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSC
T ss_pred HHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCC
Confidence 4444332 445789999999964 2233344444332111100 00011111111111000
Q ss_pred -----------------------------------cc---------------------c--h------------------
Q 036378 401 -----------------------------------NR---------------------Q--N------------------ 404 (815)
Q Consensus 401 -----------------------------------~~---------------------~--~------------------ 404 (815)
.. . .
T Consensus 474 ~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 553 (797)
T 4a2q_A 474 NPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 553 (797)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 00 0 0
Q ss_pred --------------------------------------------------------hhhhhHHHHHHHHh----hccccc
Q 036378 405 --------------------------------------------------------ERSAYVDEVFSFHR----SSKHYY 424 (815)
Q Consensus 405 --------------------------------------------------------~~~~~~~~l~~l~~----~~~~~~ 424 (815)
....++..+..++. .....+
T Consensus 554 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~k 633 (797)
T 4a2q_A 554 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTR 633 (797)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCe
Confidence 00001111222222 245689
Q ss_pred eEEEecchHHHHHHHHHHhhC------------CCcEEEecCCCCHHHHHHHHHHHhc-CCceEEEEccccccccccCCc
Q 036378 425 ILQISGKHFETDLISRYLCDN------------SISVKSYHSGIPAKDRSRIQELFCS-NKIRVVVATVAFGMGLDKRDV 491 (815)
Q Consensus 425 ~ivf~~s~~~~e~l~~~L~~~------------g~~v~~~h~~~~~~~R~~i~~~F~~-g~~~VLVaT~~~~~GID~p~v 491 (815)
++|||+++..++.+++.|... |..+..+||+|+..+|.+++++|++ |+++|||||+++++|||+|+|
T Consensus 634 vLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v 713 (797)
T 4a2q_A 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 713 (797)
T ss_dssp EEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCC
T ss_pred EEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhC
Confidence 999999999999999999873 5677788999999999999999999 999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHH
Q 036378 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFR 533 (815)
Q Consensus 492 ~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~ 533 (815)
++|||||+|+|+..|+||+|| ||. ++|.|++|+++.+...
T Consensus 714 ~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 714 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp SEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 999999999999999999999 999 8999999999877543
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-39 Score=395.70 Aligned_cols=322 Identities=16% Similarity=0.152 Sum_probs=241.7
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCCCc-eeeeecc
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPPVI-HGGFLSS 272 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~~~-~~~~i~~ 272 (815)
|+|. |+|+|.+||+.++.|+++++++|||+|||++|++|++. .++++||++|+++|+.|+++.+.+.+ ..+.+.+
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltG 161 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTG 161 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECS
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeC
Confidence 7886 99999999999999999999999999999999988864 47899999999999999999998733 3444444
Q ss_pred CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhccc
Q 036378 273 SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNV 352 (815)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~ 352 (815)
.... ..+++|+|+|||+|.+.+...... +.++++|||||||++.+|++ ...+..+ +......
T Consensus 162 d~~~-----------~~~~~IvV~Tpe~L~~~L~~~~~~-l~~l~lVViDEaH~l~d~~r--g~~~e~i----l~~l~~~ 223 (1010)
T 2xgj_A 162 DITI-----------NPDAGCLVMTTEILRSMLYRGSEV-MREVAWVIFDEVHYMRDKER--GVVWEET----IILLPDK 223 (1010)
T ss_dssp SCEE-----------CTTCSEEEEEHHHHHHHHHHTCTT-GGGEEEEEEETGGGGGCTTT--HHHHHHH----HHHSCTT
T ss_pred CCcc-----------CCCCCEEEEcHHHHHHHHHcCcch-hhcCCEEEEechhhhcccch--hHHHHHH----HHhcCCC
Confidence 4322 125799999999998876654443 77999999999999998743 3333333 3444567
Q ss_pred ceeEeeecccChhHHHHHHHHhc---CCccceeeccccCCCeeEEEEecC---------Cccch----------------
Q 036378 353 ECILAMTATATTTTLRDVMSALE---IPLSNLIQKAQLRDNLQLSVSLSG---------NNRQN---------------- 404 (815)
Q Consensus 353 ~~vl~lSAT~~~~~~~~i~~~l~---~~~~~~~~~~~~~~~l~~~v~~~~---------~~~~~---------------- 404 (815)
.++++||||++... .+..++. .....++.....+.++...+.... .....
T Consensus 224 ~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (1010)
T 2xgj_A 224 VRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQI 301 (1010)
T ss_dssp CEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC---
T ss_pred CeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhh
Confidence 89999999987642 2444432 112223333333333333332211 00000
Q ss_pred -----------------hh-------hhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCc------------
Q 036378 405 -----------------ER-------SAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSIS------------ 448 (815)
Q Consensus 405 -----------------~~-------~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~------------ 448 (815)
.. ...+..+...+......+++|||++++.|+.++..|...++.
T Consensus 302 ~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~ 381 (1010)
T 2xgj_A 302 GDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIF 381 (1010)
T ss_dssp ---------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 00 111222333333345568999999999999999999875542
Q ss_pred ---------------------------EEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE----e
Q 036378 449 ---------------------------VKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH----Y 497 (815)
Q Consensus 449 ---------------------------v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~----~ 497 (815)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |
T Consensus 382 ~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kf 461 (1010)
T 2xgj_A 382 NNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKW 461 (1010)
T ss_dssp HHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEE
T ss_pred HHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCccc
Confidence 889999999999999999999999999999999999999999999999 9
Q ss_pred CC----CCCHHHHHHHHcccCCCCC--CceEEEEeccc-cHHHHHHhhh
Q 036378 498 SL----PESLEEYVQEIGRAGRDGR--LSYCHLFLDDI-TYFRLRSLMY 539 (815)
Q Consensus 498 d~----P~s~~~y~Qr~GRaGR~g~--~g~~i~l~~~~-d~~~l~~~~~ 539 (815)
|. |.+..+|+||+|||||.|. .|.|++++++. +...++.++.
T Consensus 462 d~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 462 DGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp CSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred CCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 99 8999999999999999997 59999999865 6666666643
No 31
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.2e-40 Score=391.12 Aligned_cols=314 Identities=18% Similarity=0.218 Sum_probs=238.2
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHH
Q 036378 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDK------KSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLR 259 (815)
Q Consensus 189 l~~~l~~~~g~~~~~~~Q~~ai~~il~g------~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~ 259 (815)
+.+.+...+|| .||++|+++|+.++.+ +++|+++|||||||++|++|++.. +.+++|++||++|+.|+++
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~ 435 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYR 435 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH
Confidence 34444455899 9999999999999875 699999999999999999998754 8899999999999999999
Q ss_pred hcCC-----CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCc
Q 036378 260 HLPP-----VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNF 334 (815)
Q Consensus 260 ~l~~-----~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~f 334 (815)
.+.+ +++...+.++....+....+..+..|.++|+|+||+.|.+. .. +.++++|||||+|++. ...
T Consensus 436 ~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~-----~~-~~~l~lVVIDEaHr~g---~~q 506 (780)
T 1gm5_A 436 RTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED-----VH-FKNLGLVIIDEQHRFG---VKQ 506 (780)
T ss_dssp HHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC-----CC-CSCCCEEEEESCCCC-------
T ss_pred HHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh-----hh-ccCCceEEecccchhh---HHH
Confidence 9876 35667788888888888889999999999999999987432 22 6789999999999963 222
Q ss_pred hHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceee-ccccCCCeeEEEEecCCccchhhhhhHHHH
Q 036378 335 RPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQ-KAQLRDNLQLSVSLSGNNRQNERSAYVDEV 413 (815)
Q Consensus 335 r~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l 413 (815)
+. .+.......++++||||+.+++.... .++.....++. .+..+.++...+.. ... ....+..+
T Consensus 507 r~--------~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~--~~~---~~~l~~~i 571 (780)
T 1gm5_A 507 RE--------ALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTMLVP--MDR---VNEVYEFV 571 (780)
T ss_dssp -C--------CCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEECCCC--SST---HHHHHHHH
T ss_pred HH--------HHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEEEec--cch---HHHHHHHH
Confidence 21 12222345789999999998876432 23222222221 12223333322221 111 11112211
Q ss_pred HHHHhhccccceEEEecch--------HHHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccc
Q 036378 414 FSFHRSSKHYYILQISGKH--------FETDLISRYLCD---NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF 482 (815)
Q Consensus 414 ~~l~~~~~~~~~ivf~~s~--------~~~e~l~~~L~~---~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~ 482 (815)
.. ....+.++++||++. ..++.+++.|.+ .++.+..+||+|++++|.+++++|++|+++|||||+++
T Consensus 572 ~~--~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vi 649 (780)
T 1gm5_A 572 RQ--EVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVI 649 (780)
T ss_dssp HH--HTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCC
T ss_pred HH--HHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 11 123467889999865 457889999988 57899999999999999999999999999999999999
Q ss_pred ccccccCCccEEEEeCCCC-CHHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 483 GMGLDKRDVGAVIHYSLPE-SLEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 483 ~~GID~p~v~~VI~~d~P~-s~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
++|||+|++++||+++.|. ++..|+||+||+||.|++|+|++++++.
T Consensus 650 e~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~ 697 (780)
T 1gm5_A 650 EVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV 697 (780)
T ss_dssp CSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC
T ss_pred CccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC
Confidence 9999999999999999996 7999999999999999999999999843
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.3e-38 Score=360.22 Aligned_cols=319 Identities=20% Similarity=0.230 Sum_probs=235.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----CCcEEEEcccHHHHHHHHHhcCCCc-----eeeeec
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVI-----HGGFLS 271 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~----~~~~lVl~P~~~L~~q~~~~l~~~~-----~~~~i~ 271 (815)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++.. ++++|||+|+++|+.|+.+.+.+.. ....+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 6999999999999999 99999999999999999998754 8899999999999999999998743 445556
Q ss_pred cCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcc
Q 036378 272 SSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLN 351 (815)
Q Consensus 272 ~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~ 351 (815)
+.....+....+. ..+|+|+||+.|........+. +.++++|||||||++... ..|..+ ...+....+
T Consensus 88 g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~-~~~~~~vIiDEaH~~~~~-----~~~~~~-~~~~~~~~~ 155 (494)
T 1wp9_A 88 GEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRIS-LEDVSLIVFDEAHRAVGN-----YAYVFI-AREYKRQAK 155 (494)
T ss_dssp SCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCC-TTSCSEEEEETGGGCSTT-----CHHHHH-HHHHHHHCS
T ss_pred CCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcc-hhhceEEEEECCcccCCC-----CcHHHH-HHHHHhcCC
Confidence 6655554333322 4799999999998876554444 678999999999999742 133444 233444556
Q ss_pred cceeEeeecccCh--hHHHHHHHHhcCCccceeec------cc-cCCCeeEEEEecCCccc-------------------
Q 036378 352 VECILAMTATATT--TTLRDVMSALEIPLSNLIQK------AQ-LRDNLQLSVSLSGNNRQ------------------- 403 (815)
Q Consensus 352 ~~~vl~lSAT~~~--~~~~~i~~~l~~~~~~~~~~------~~-~~~~l~~~v~~~~~~~~------------------- 403 (815)
..++++||||+.. .....+...+.......... .. .................
T Consensus 156 ~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (494)
T 1wp9_A 156 NPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAE 235 (494)
T ss_dssp SCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999983 34445555554432211100 00 00111110000000000
Q ss_pred -------------h------------------------------------------------------------------
Q 036378 404 -------------N------------------------------------------------------------------ 404 (815)
Q Consensus 404 -------------~------------------------------------------------------------------ 404 (815)
.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (494)
T 1wp9_A 236 TGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKA 315 (494)
T ss_dssp HTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchh
Confidence 0
Q ss_pred ------------------------hhhhhHHHHHHHHhh----ccccceEEEecchHHHHHHHHHHhhCCCcEEEecC--
Q 036378 405 ------------------------ERSAYVDEVFSFHRS----SKHYYILQISGKHFETDLISRYLCDNSISVKSYHS-- 454 (815)
Q Consensus 405 ------------------------~~~~~~~~l~~l~~~----~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~-- 454 (815)
.....+..+..++.. ....+++|||+++..++.+++.|...|+.+..+||
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~ 395 (494)
T 1wp9_A 316 SKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQA 395 (494)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSS
T ss_pred hhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccc
Confidence 000112222233332 45789999999999999999999999999999999
Q ss_pred ------CCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEecc
Q 036378 455 ------GIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDD 528 (815)
Q Consensus 455 ------~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~ 528 (815)
+|+..+|.+++++|++|+.+|||||+++++|||+|++++||+||+|++...|+||+||+||.|+ |.++.|+++
T Consensus 396 ~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~ 474 (494)
T 1wp9_A 396 SKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAK 474 (494)
T ss_dssp CC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEET
T ss_pred cccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999998
Q ss_pred ccHHH
Q 036378 529 ITYFR 533 (815)
Q Consensus 529 ~d~~~ 533 (815)
.+...
T Consensus 475 ~t~ee 479 (494)
T 1wp9_A 475 GTRDE 479 (494)
T ss_dssp TSHHH
T ss_pred CCHHH
Confidence 76543
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.2e-39 Score=403.99 Aligned_cols=279 Identities=15% Similarity=0.113 Sum_probs=204.0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----CCcEEEEcccHHHHHHHHHhcCCC--
Q 036378 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPV-- 264 (815)
Q Consensus 191 ~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~----~~~~lVl~P~~~L~~q~~~~l~~~-- 264 (815)
+.+...+||. | |+|.++|+.++.|+|+++++|||||||+ |++|++.. ++++|||+||++|+.|+++.+.+.
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~ 124 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAE 124 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 3444558999 9 9999999999999999999999999998 88888753 689999999999999999998862
Q ss_pred ---c----eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHH
Q 036378 265 ---I----HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPS 337 (815)
Q Consensus 265 ---~----~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~ 337 (815)
+ ....+.++....+.....+.+.. ++|+|+||++|.+.+.. +.++++|||||||++++||++++..
T Consensus 125 ~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~~~~~~~~i 197 (1054)
T 1gku_B 125 KAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILKASKNVDKL 197 (1054)
T ss_dssp TTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHTSTHHHHHH
T ss_pred hcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhhccccHHHH
Confidence 2 45566677766665555555554 89999999999876433 5689999999999999988777665
Q ss_pred HHHHHHH----HHHHhcccceeEeeecccChhHHH---HHH-HHhcCCccceeeccccCCCeeEEEEecCCccchhhhhh
Q 036378 338 YMRLRAS----LLRARLNVECILAMTATATTTTLR---DVM-SALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAY 409 (815)
Q Consensus 338 ~~~i~~~----~~~~~~~~~~vl~lSAT~~~~~~~---~i~-~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~ 409 (815)
+..+ .. .........|++++|||++.. .. .+. ...... +........++...+.. ....
T Consensus 198 ~~~l-gf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~---v~~~~~~~~~i~~~~~~-~~k~------- 264 (1054)
T 1gku_B 198 LHLL-GFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFD---IGSSRITVRNVEDVAVN-DESI------- 264 (1054)
T ss_dssp HHHT-TEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCC---CSCCEECCCCEEEEEES-CCCT-------
T ss_pred HHHh-CcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEE---ccCcccCcCCceEEEec-hhHH-------
Confidence 5433 10 001113456899999999986 31 111 112211 11122233444444331 1111
Q ss_pred HHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEE----ccccccc
Q 036378 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVA----TVAFGMG 485 (815)
Q Consensus 410 ~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVa----T~~~~~G 485 (815)
..+..++... +.+++|||++++.++.+++.|... +.+..+||+| .+++++|++|+.+|||| |+++++|
T Consensus 265 -~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 265 -STLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp -TTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CC
T ss_pred -HHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 1112333333 568999999999999999999998 9999999998 37889999999999999 9999999
Q ss_pred cccCCc-cEEEEeCCC
Q 036378 486 LDKRDV-GAVIHYSLP 500 (815)
Q Consensus 486 ID~p~v-~~VI~~d~P 500 (815)
||+|+| ++|||+|+|
T Consensus 337 IDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCP 352 (1054)
T ss_dssp SCCTTTCCEEEEESCC
T ss_pred cccCCcccEEEEeCCC
Confidence 999996 999999999
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=5.6e-39 Score=394.88 Aligned_cols=327 Identities=16% Similarity=0.236 Sum_probs=195.1
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc--------CCcEEEEcccHHHHHHHHHhcCCC---
Q 036378 196 VYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--------PGLTLVVCPLVALMIDQLRHLPPV--- 264 (815)
Q Consensus 196 ~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--------~~~~lVl~P~~~L~~q~~~~l~~~--- 264 (815)
..|+..|||+|.++|+.++.|+++++++|||+|||++|++|++.. ++++|||+|+++|+.|+++.+.+.
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 357899999999999999999999999999999999999999865 788999999999999999999873
Q ss_pred --ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHH
Q 036378 265 --IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLR 342 (815)
Q Consensus 265 --~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~ 342 (815)
+....+.++...... ...+.. .++|+|+||++|.+.+....+..+.++++|||||||++..++ .|..+.
T Consensus 323 ~~~~v~~~~G~~~~~~~---~~~~~~-~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~-----~~~~i~ 393 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVS---VEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-----PYNVLM 393 (936)
T ss_dssp TTCCEEEECCC-----C---CHHHHH-HCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTC-----HHHHHH
T ss_pred cCceEEEEECCcchhhH---HHHhcc-CCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCc-----cHHHHH
Confidence 444555555432221 112222 479999999999887665544236789999999999998642 255554
Q ss_pred HHHHHHh----cccceeEeeecccCh----------hHHHHHHHHhcCCccceee-------ccccCCCeeEEEEecCCc
Q 036378 343 ASLLRAR----LNVECILAMTATATT----------TTLRDVMSALEIPLSNLIQ-------KAQLRDNLQLSVSLSGNN 401 (815)
Q Consensus 343 ~~~~~~~----~~~~~vl~lSAT~~~----------~~~~~i~~~l~~~~~~~~~-------~~~~~~~l~~~v~~~~~~ 401 (815)
..++... .+..++++||||+.. +....+...+......... ....++...+........
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 473 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIH 473 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSC
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccC
Confidence 4444332 445789999999964 2233333444322111000 000111111111100000
Q ss_pred ------------------------------------c---------------------c--------------h------
Q 036378 402 ------------------------------------R---------------------Q--------------N------ 404 (815)
Q Consensus 402 ------------------------------------~---------------------~--------------~------ 404 (815)
. . .
T Consensus 474 ~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 553 (936)
T 4a2w_A 474 NPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 553 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 0 0 0
Q ss_pred ------------h--------------------------------------------hhhhHHHHHHHHhh----ccccc
Q 036378 405 ------------E--------------------------------------------RSAYVDEVFSFHRS----SKHYY 424 (815)
Q Consensus 405 ------------~--------------------------------------------~~~~~~~l~~l~~~----~~~~~ 424 (815)
. ....+..+..++.. ..+.+
T Consensus 554 ~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~r 633 (936)
T 4a2w_A 554 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTR 633 (936)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCC
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCe
Confidence 0 00011112222222 34589
Q ss_pred eEEEecchHHHHHHHHHHhhC------------CCcEEEecCCCCHHHHHHHHHHHhc-CCceEEEEccccccccccCCc
Q 036378 425 ILQISGKHFETDLISRYLCDN------------SISVKSYHSGIPAKDRSRIQELFCS-NKIRVVVATVAFGMGLDKRDV 491 (815)
Q Consensus 425 ~ivf~~s~~~~e~l~~~L~~~------------g~~v~~~h~~~~~~~R~~i~~~F~~-g~~~VLVaT~~~~~GID~p~v 491 (815)
++|||++++.++.|++.|... |..+..+||+|+..+|.+++++|++ |+++|||||+++++|||+|+|
T Consensus 634 vLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v 713 (936)
T 4a2w_A 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQC 713 (936)
T ss_dssp EEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCC
T ss_pred EEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhC
Confidence 999999999999999999986 6667777999999999999999999 999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHH
Q 036378 492 GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFR 533 (815)
Q Consensus 492 ~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~ 533 (815)
++|||||+|+|...|+||+|| ||. +.|.|++|++..+...
T Consensus 714 ~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 714 NLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp SEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 999999999999999999999 999 7899999998876554
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.1e-37 Score=364.23 Aligned_cols=324 Identities=15% Similarity=0.120 Sum_probs=226.0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCC----
Q 036378 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPP---- 263 (815)
Q Consensus 191 ~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~---- 263 (815)
+..++.+|| .|+|+|..+++.++.|+ |+.|+||+|||++|.+|++. .+..++||+||++||.|..+.+..
T Consensus 74 ea~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 74 EASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 344556899 99999999999999999 99999999999999999983 377899999999999998887765
Q ss_pred -CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhh-hchhhhh------hhhhcCcccEEEEecccccc-cccc--
Q 036378 264 -VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF-LNADFLS------IFTATSLISLVVVDEAHCVS-EWSH-- 332 (815)
Q Consensus 264 -~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L-~~~~~~~------~~~~~~~i~~lViDEaH~i~-~~g~-- 332 (815)
++....+.+++...+... .. .++|+|+||++| .+.+... .+. +..+.++||||||.|+ +.+.
T Consensus 151 lgl~v~~i~gg~~~~~r~~-----~~-~~dIv~gTpgrlgfD~L~D~m~~~~~~l~-lr~~~~lVlDEaD~mLiDea~tp 223 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKRE-----AY-AADITYSTNNELGFDYLRDNMVLYKEQMV-QRPLHFAVIDEVDSILIDEARTP 223 (844)
T ss_dssp TTCCEEECCTTSCHHHHHH-----HH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCC-CCCCCEEEEETHHHHHTTTTTCE
T ss_pred cCCeEEEEeCCCCHHHHHH-----hc-CCCEEEECchhhhHHHHHHhhhcchhhhc-ccCCCEEEECchhhhhhhccccc
Confidence 355666666666543222 22 389999999999 3332221 122 6789999999999997 6431
Q ss_pred -----------CchHHHHHHHHHHHHHhc---------ccceeE-----------------eeecccCh---hHHHHHHH
Q 036378 333 -----------NFRPSYMRLRASLLRARL---------NVECIL-----------------AMTATATT---TTLRDVMS 372 (815)
Q Consensus 333 -----------~fr~~~~~i~~~~~~~~~---------~~~~vl-----------------~lSAT~~~---~~~~~i~~ 372 (815)
+|.+.. ..++.... ...+++ ++|||.+. .+...+..
T Consensus 224 lIisg~~~~~~~~~~~i----~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A 299 (844)
T 1tf5_A 224 LIISGQAAKSTKLYVQA----NAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKA 299 (844)
T ss_dssp EEEEEEEECCCHHHHHH----HHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHH
T ss_pred hhhcCCcccchhHHHHH----HHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHH
Confidence 133333 34444443 245666 88998652 22211111
Q ss_pred -H-hcCCccceeec-------c--------------------------ccCCCee-------------------------
Q 036378 373 -A-LEIPLSNLIQK-------A--------------------------QLRDNLQ------------------------- 392 (815)
Q Consensus 373 -~-l~~~~~~~~~~-------~--------------------------~~~~~l~------------------------- 392 (815)
. +......++.. . ....+..
T Consensus 300 ~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~t 379 (844)
T 1tf5_A 300 HVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKT 379 (844)
T ss_dssp HHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGG
T ss_pred HHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccch
Confidence 1 11100000000 0 0000000
Q ss_pred ------------EEEEecC---------CccchhhhhhHHHHHHHHhh--ccccceEEEecchHHHHHHHHHHhhCCCcE
Q 036378 393 ------------LSVSLSG---------NNRQNERSAYVDEVFSFHRS--SKHYYILQISGKHFETDLISRYLCDNSISV 449 (815)
Q Consensus 393 ------------~~v~~~~---------~~~~~~~~~~~~~l~~l~~~--~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v 449 (815)
..+.... +........+...+...+.. ..+.+++|||+|++.++.|++.|...|+.+
T Consensus 380 e~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~ 459 (844)
T 1tf5_A 380 EEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPH 459 (844)
T ss_dssp GHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred hHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCE
Confidence 0000000 00000112223333333322 246789999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccC--------CccEEEEeCCCCCHHHHHHHHcccCCCCCCce
Q 036378 450 KSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR--------DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSY 521 (815)
Q Consensus 450 ~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p--------~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~ 521 (815)
..+||++...+|..+.++|+.| .|+||||++|||+|++ ++.+||+|++|.|.+.|+||+||+||.|.+|.
T Consensus 460 ~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 460 QVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp EEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred EEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 9999999988887777666665 6999999999999999 78899999999999999999999999999999
Q ss_pred EEEEecccc
Q 036378 522 CHLFLDDIT 530 (815)
Q Consensus 522 ~i~l~~~~d 530 (815)
+++|++.+|
T Consensus 538 s~~~vs~eD 546 (844)
T 1tf5_A 538 TQFYLSMED 546 (844)
T ss_dssp EEEEEETTS
T ss_pred EEEEecHHH
Confidence 999998876
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.7e-37 Score=383.88 Aligned_cols=314 Identities=17% Similarity=0.183 Sum_probs=245.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHc----CC--CEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHH
Q 036378 189 LGRLLRLVYGYDSFRDGQLEAIKMVLD----KK--STMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLR 259 (815)
Q Consensus 189 l~~~l~~~~g~~~~~~~Q~~ai~~il~----g~--d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~ 259 (815)
..+.+...|||. +||+|.+||+.++. |+ |+|+++|||+|||++|+++++. .+.+++|++||++|+.|+++
T Consensus 592 ~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~ 670 (1151)
T 2eyq_A 592 QYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 670 (1151)
T ss_dssp HHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHH
Confidence 344556668987 59999999999987 66 9999999999999999988753 47899999999999999999
Q ss_pred hcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCc
Q 036378 260 HLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNF 334 (815)
Q Consensus 260 ~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~f 334 (815)
.+.+. +....+.+..+..+....++.+..|.++|+|+||+.|... +. +.++++|||||||++. ..
T Consensus 671 ~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~-----~~-~~~l~lvIiDEaH~~g---~~- 740 (1151)
T 2eyq_A 671 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD-----VK-FKDLGLLIVDEEHRFG---VR- 740 (1151)
T ss_dssp HHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC-----CC-CSSEEEEEEESGGGSC---HH-
T ss_pred HHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC-----cc-ccccceEEEechHhcC---hH-
Confidence 98752 4456677777888888888999999999999999877432 22 6789999999999953 11
Q ss_pred hHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeec-cccCCCeeEEEEecCCccchhhhhhHHHH
Q 036378 335 RPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQK-AQLRDNLQLSVSLSGNNRQNERSAYVDEV 413 (815)
Q Consensus 335 r~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~v~~~~~~~~~~~~~~~~~l 413 (815)
.. ..++......++++||||+.+++.......+ .....+.. +..+.++...+..... ......+
T Consensus 741 ---~~----~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~--~~~~~i~~~~~~r~~i~~~~~~~~~------~~i~~~i 805 (1151)
T 2eyq_A 741 ---HK----ERIKAMRANVDILTLTATPIPRTLNMAMSGM--RDLSIIATPPARRLAVKTFVREYDS------MVVREAI 805 (1151)
T ss_dssp ---HH----HHHHHHHTTSEEEEEESSCCCHHHHHHHTTT--SEEEECCCCCCBCBCEEEEEEECCH------HHHHHHH
T ss_pred ---HH----HHHHHhcCCCCEEEEcCCCChhhHHHHHhcC--CCceEEecCCCCccccEEEEecCCH------HHHHHHH
Confidence 11 2233444567899999999998876554433 22222221 2223333333332211 1111111
Q ss_pred HHHHhhccccceEEEecchHHHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCc
Q 036378 414 FSFHRSSKHYYILQISGKHFETDLISRYLCDN--SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV 491 (815)
Q Consensus 414 ~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v 491 (815)
+.....+.++++||++++.++.+++.|++. ++.+..+||+|+..+|.+++++|.+|+.+|||||+++++|||+|++
T Consensus 806 --l~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v 883 (1151)
T 2eyq_A 806 --LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 883 (1151)
T ss_dssp --HHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTE
T ss_pred --HHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCC
Confidence 122345788999999999999999999987 8899999999999999999999999999999999999999999999
Q ss_pred cEEEEeCC-CCCHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 492 GAVIHYSL-PESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 492 ~~VI~~d~-P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
++||+++. +.++.+|+||+||+||.|+.|+|++++.+.+
T Consensus 884 ~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 884 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp EEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred cEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999988 5699999999999999999999999997653
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.8e-38 Score=400.27 Aligned_cols=334 Identities=17% Similarity=0.218 Sum_probs=244.8
Q ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEcCCChhHHHHHHHHHHHc-----CCcEEEEcccHHHHHHHHHhcCCC------
Q 036378 197 YGYDSFRDGQLEAIKMVLDK-KSTMLVLPTGAGKSLCYQIPAMIL-----PGLTLVVCPLVALMIDQLRHLPPV------ 264 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g-~d~li~apTGsGKTl~~~lp~l~~-----~~~~lVl~P~~~L~~q~~~~l~~~------ 264 (815)
.+|..|+|+|.++++.++.+ ++++++||||||||++|.+|++.. ++++|+|+|+++|+.|+++.+.+.
T Consensus 922 ~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 922 DKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp TTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred hcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 48999999999999999865 589999999999999999998743 678999999999999999988652
Q ss_pred ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhh-hhhhcCcccEEEEeccccccccccCchHHHHHHHH
Q 036378 265 IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS-IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRA 343 (815)
Q Consensus 265 ~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~-~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~ 343 (815)
++...+.+.. ....+.+. +++|+|+|||+|....... ....+.++++|||||+|++.+ ...+.+..++.
T Consensus 1002 ~~V~~ltGd~-----~~~~~~~~--~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d---~rg~~le~il~ 1071 (1724)
T 4f92_B 1002 KKVVLLTGET-----STDLKLLG--KGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG---ENGPVLEVICS 1071 (1724)
T ss_dssp CCEEECCSCH-----HHHHHHHH--HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS---TTHHHHHHHHH
T ss_pred CEEEEEECCC-----CcchhhcC--CCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC---CCCccHHHHHH
Confidence 2222222221 11122222 4699999999986543221 112266899999999999976 34445544433
Q ss_pred HHH---HHhcccceeEeeecccChhHHHHHHHHhcCCcccee--eccccCCCeeEEEEecCCccchhhh-hhHHHH-HHH
Q 036378 344 SLL---RARLNVECILAMTATATTTTLRDVMSALEIPLSNLI--QKAQLRDNLQLSVSLSGNNRQNERS-AYVDEV-FSF 416 (815)
Q Consensus 344 ~~~---~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~l-~~l 416 (815)
.+. .......|+++||||.+. ..++.+|++......+ .....+.++...+............ .....+ ..+
T Consensus 1072 rl~~i~~~~~~~~riI~lSATl~N--~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i 1149 (1724)
T 4f92_B 1072 RMRYISSQIERPIRIVALSSSLSN--AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAI 1149 (1724)
T ss_dssp HHHHHHHTTSSCCEEEEEESCBTT--HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhhcCCCceEEEEeCCCCC--HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHH
Confidence 332 233456799999999875 4678999987654433 3333334455444433322221111 111111 223
Q ss_pred HhhccccceEEEecchHHHHHHHHHHhhC----------------------------------CCcEEEecCCCCHHHHH
Q 036378 417 HRSSKHYYILQISGKHFETDLISRYLCDN----------------------------------SISVKSYHSGIPAKDRS 462 (815)
Q Consensus 417 ~~~~~~~~~ivf~~s~~~~e~l~~~L~~~----------------------------------g~~v~~~h~~~~~~~R~ 462 (815)
.......++++||++++.|+.+|..|... ..++.+|||||++.+|.
T Consensus 1150 ~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~ 1229 (1724)
T 4f92_B 1150 TKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERR 1229 (1724)
T ss_dssp HHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHH
T ss_pred HHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHH
Confidence 44556789999999999999988776421 24689999999999999
Q ss_pred HHHHHHhcCCceEEEEccccccccccCCccEEEE----------eCCCCCHHHHHHHHcccCCCCC--CceEEEEecccc
Q 036378 463 RIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH----------YSLPESLEEYVQEIGRAGRDGR--LSYCHLFLDDIT 530 (815)
Q Consensus 463 ~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~----------~d~P~s~~~y~Qr~GRaGR~g~--~g~~i~l~~~~d 530 (815)
.+++.|++|.++|||||+++++|||+|++++||. ...|.+..+|.||+|||||.|. .|.|++++.+.+
T Consensus 1230 ~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~ 1309 (1724)
T 4f92_B 1230 LVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSK 1309 (1724)
T ss_dssp HHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGG
T ss_pred HHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchH
Confidence 9999999999999999999999999999999993 3356799999999999999987 699999999999
Q ss_pred HHHHHHhhhcCC
Q 036378 531 YFRLRSLMYSDG 542 (815)
Q Consensus 531 ~~~l~~~~~~~~ 542 (815)
...+++++....
T Consensus 1310 ~~~~~~ll~~~~ 1321 (1724)
T 4f92_B 1310 KDFFKKFLYEPL 1321 (1724)
T ss_dssp HHHHHHHTTSCB
T ss_pred HHHHHHHhCCCC
Confidence 988888875543
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.7e-36 Score=349.40 Aligned_cols=307 Identities=16% Similarity=0.102 Sum_probs=217.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH----cCCcEEEEcccHHHHHHHHHhcCCC--c---eeee
Q 036378 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVALMIDQLRHLPPV--I---HGGF 269 (815)
Q Consensus 199 ~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~----~~~~~lVl~P~~~L~~q~~~~l~~~--~---~~~~ 269 (815)
...|||+|.+||+.++.++++++++|||+|||++|++++.. ..+++|||+|+++|+.|+++.+.++ . ....
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 34899999999999999999999999999999999998875 2459999999999999999999764 2 2344
Q ss_pred eccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHh
Q 036378 270 LSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRAR 349 (815)
Q Consensus 270 i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~ 349 (815)
+.++....+. ..+..+|+|+||+.|..... ..+.++++|||||||++.. +.+. .+++..
T Consensus 191 ~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~----~~~~~~~liIiDE~H~~~~------~~~~----~il~~~ 249 (510)
T 2oca_A 191 IGGGASKDDK-------YKNDAPVVVGTWQTVVKQPK----EWFSQFGMMMNDECHLATG------KSIS----SIISGL 249 (510)
T ss_dssp CGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCG----GGGGGEEEEEEETGGGCCH------HHHH----HHGGGC
T ss_pred EecCCccccc-------cccCCcEEEEeHHHHhhchh----hhhhcCCEEEEECCcCCCc------ccHH----HHHHhc
Confidence 4444433221 34578999999998876421 1256899999999999873 2333 334455
Q ss_pred cccceeEeeecccChhHHH--HHHHHhcCCc-----cceeeccccCCCeeEEEEecCCcc--------chhh--------
Q 036378 350 LNVECILAMTATATTTTLR--DVMSALEIPL-----SNLIQKAQLRDNLQLSVSLSGNNR--------QNER-------- 406 (815)
Q Consensus 350 ~~~~~vl~lSAT~~~~~~~--~i~~~l~~~~-----~~~~~~~~~~~~l~~~v~~~~~~~--------~~~~-------- 406 (815)
....++++||||++..... .....++... ...+......+.....+....... ....
T Consensus 250 ~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (510)
T 2oca_A 250 NNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGL 329 (510)
T ss_dssp TTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTC
T ss_pred ccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhcc
Confidence 5677899999999665322 1222222111 111111111111111111111000 0000
Q ss_pred hhhHHHHHHHHhhc---cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEc-ccc
Q 036378 407 SAYVDEVFSFHRSS---KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT-VAF 482 (815)
Q Consensus 407 ~~~~~~l~~l~~~~---~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT-~~~ 482 (815)
......+..++... ....+++|++ .+.++.+++.|.+.+..+..+||+|+..+|.+++++|.+|+.+||||| +++
T Consensus 330 ~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~ 408 (510)
T 2oca_A 330 SKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF 408 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh
Confidence 00111122222221 3344555555 889999999999998899999999999999999999999999999999 999
Q ss_pred ccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEec
Q 036378 483 GMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLD 527 (815)
Q Consensus 483 ~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~ 527 (815)
++|||+|++++||+++.|.++..|+|++||+||.|+.+.++++++
T Consensus 409 ~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 409 STGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred hcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999998886666665
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.7e-36 Score=388.02 Aligned_cols=330 Identities=19% Similarity=0.232 Sum_probs=242.1
Q ss_pred CCCCCCHHHHHHHHHHHc-CCCEEEEcCCChhHHHHHHHHHHHc--------------CCcEEEEcccHHHHHHHHHhcC
Q 036378 198 GYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMIL--------------PGLTLVVCPLVALMIDQLRHLP 262 (815)
Q Consensus 198 g~~~~~~~Q~~ai~~il~-g~d~li~apTGsGKTl~~~lp~l~~--------------~~~~lVl~P~~~L~~q~~~~l~ 262 (815)
||..|+++|.++++.++. ++|+|++||||||||++|.+|++.. +.++|+|+|++||+.|+++.|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999999885 7799999999999999999998742 4579999999999999999987
Q ss_pred C-----CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhh-hhhcCcccEEEEeccccccccccCchH
Q 036378 263 P-----VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI-FTATSLISLVVVDEAHCVSEWSHNFRP 336 (815)
Q Consensus 263 ~-----~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~-~~~~~~i~~lViDEaH~i~~~g~~fr~ 336 (815)
+ ++....+.+........ ...++|+|+|||++........ ...+..+++|||||+|.+.+ -|.
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~-------~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d----~RG 224 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE-------ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD----DRG 224 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT-------GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS----TTH
T ss_pred HHHhhCCCEEEEEECCCCCCccc-------cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC----ccH
Confidence 5 34444455544322111 1258999999999854432211 11267899999999998863 365
Q ss_pred HHHHH-HHHHH---HHhcccceeEeeecccChhHHHHHHHHhcCCcc---ceeeccccCCCeeEEEEecCCccchhhhhh
Q 036378 337 SYMRL-RASLL---RARLNVECILAMTATATTTTLRDVMSALEIPLS---NLIQKAQLRDNLQLSVSLSGNNRQNERSAY 409 (815)
Q Consensus 337 ~~~~i-~~~~~---~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~ 409 (815)
..+.. +.+++ .......|+|+||||.++ .+++.+||+.... ..+...+.+-++...+..............
T Consensus 225 ~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N--~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~ 302 (1724)
T 4f92_B 225 PVLEALVARAIRNIEMTQEDVRLIGLSATLPN--YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQI 302 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT--HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEecccCC--HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHH
Confidence 54433 23332 234556799999999875 4678899875422 133333333445444333333222222222
Q ss_pred HHH-H-HHHHhhccccceEEEecchHHHHHHHHHHhhC-------------------------------------CCcEE
Q 036378 410 VDE-V-FSFHRSSKHYYILQISGKHFETDLISRYLCDN-------------------------------------SISVK 450 (815)
Q Consensus 410 ~~~-l-~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~-------------------------------------g~~v~ 450 (815)
+.. + ..+.+...+.+++|||++|+.|+.+|+.|.+. ..++.
T Consensus 303 ~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva 382 (1724)
T 4f92_B 303 MNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 382 (1724)
T ss_dssp HHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEE
T ss_pred HHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEE
Confidence 211 1 12334456779999999999999998887531 24589
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE----eC------CCCCHHHHHHHHcccCCCCC--
Q 036378 451 SYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH----YS------LPESLEEYVQEIGRAGRDGR-- 518 (815)
Q Consensus 451 ~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~----~d------~P~s~~~y~Qr~GRaGR~g~-- 518 (815)
++||||+.++|..+.+.|++|.++|||||+++++|||+|.+++||+ |+ .|.+..+|.||+|||||.|.
T Consensus 383 ~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~ 462 (1724)
T 4f92_B 383 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDT 462 (1724)
T ss_dssp EECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCS
T ss_pred EEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCC
Confidence 9999999999999999999999999999999999999999999996 44 35699999999999999875
Q ss_pred CceEEEEeccccHHHHHHhhhc
Q 036378 519 LSYCHLFLDDITYFRLRSLMYS 540 (815)
Q Consensus 519 ~g~~i~l~~~~d~~~l~~~~~~ 540 (815)
.|.++++.++.+......++..
T Consensus 463 ~G~~ii~~~~~~~~~~~~ll~~ 484 (1724)
T 4f92_B 463 KGEGILITSHGELQYYLSLLNQ 484 (1724)
T ss_dssp CEEEEEEEESTTCCHHHHHTTT
T ss_pred ccEEEEEecchhHHHHHHHHcC
Confidence 6999999999887777776644
No 40
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=9.6e-37 Score=346.79 Aligned_cols=283 Identities=18% Similarity=0.083 Sum_probs=206.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCE-EEEcCCChhHHHHHHHHHHH----cCCcEEEEcccHHHHHHHHHhcCCCceeeeecc
Q 036378 198 GYDSFRDGQLEAIKMVLDKKST-MLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSS 272 (815)
Q Consensus 198 g~~~~~~~Q~~ai~~il~g~d~-li~apTGsGKTl~~~lp~l~----~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~ 272 (815)
|+.+++|+|+ +|+.+++++++ ++++|||||||++|++|++. .++++||++||++|+.|+++.+.... ......
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~-v~~~~~ 78 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGLP-IRYQTP 78 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC-EEECCT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCce-eeeeec
Confidence 7889999985 89999999987 88899999999999999864 37799999999999999999996421 111111
Q ss_pred CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhccc
Q 036378 273 SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNV 352 (815)
Q Consensus 273 ~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~ 352 (815)
.... ...+...|.++|++.+...+... ..+.++++|||||||++ ++ .+......+ ..+...+.
T Consensus 79 ~~~~---------~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~--~~~~~~~~~---~~~~~~~~ 141 (451)
T 2jlq_A 79 AVKS---------DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DP--CSVAARGYI---STRVEMGE 141 (451)
T ss_dssp TCSC---------CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SH--HHHHHHHHH---HHHHHTTS
T ss_pred cccc---------cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-Cc--chHHHHHHH---HHhhcCCC
Confidence 1100 11234679999999987665433 22678999999999988 22 222221111 11223456
Q ss_pred ceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEE-ecCCccchhhhhhHHHHHHHHhhccccceEEEecc
Q 036378 353 ECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVS-LSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGK 431 (815)
Q Consensus 353 ~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s 431 (815)
.++++||||++..+... +. ....+ ..+. ....... .... ..+.. ...+++|||++
T Consensus 142 ~~~i~~SAT~~~~~~~~----~~-~~~~~-----------~~~~~~~p~~~~---~~~~----~~l~~-~~~~~lVF~~s 197 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPF----PQ-SNSPI-----------EDIEREIPERSW---NTGF----DWITD-YQGKTVWFVPS 197 (451)
T ss_dssp CEEEEECSSCTTCCCSS----CC-CSSCE-----------EEEECCCCSSCC---SSSC----HHHHH-CCSCEEEECSS
T ss_pred ceEEEEccCCCccchhh----hc-CCCce-----------EecCccCCchhh---HHHH----HHHHh-CCCCEEEEcCC
Confidence 89999999997754221 10 00000 1110 0000000 0011 11111 25689999999
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeC-------------
Q 036378 432 HFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYS------------- 498 (815)
Q Consensus 432 ~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d------------- 498 (815)
++.++.+++.|...|+.+..+|+++. .++++.|++|+.+|||||+++++|||+|+ ++|||||
T Consensus 198 ~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~ 272 (451)
T 2jlq_A 198 IKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPE 272 (451)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccc
Confidence 99999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -------CCCCHHHHHHHHcccCCCCC-CceEEEEecc
Q 036378 499 -------LPESLEEYVQEIGRAGRDGR-LSYCHLFLDD 528 (815)
Q Consensus 499 -------~P~s~~~y~Qr~GRaGR~g~-~g~~i~l~~~ 528 (815)
.|.+.++|+||+|||||.|+ +|.|++|+..
T Consensus 273 ~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 273 RVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999988754
No 41
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.6e-36 Score=357.56 Aligned_cols=283 Identities=16% Similarity=0.051 Sum_probs=202.1
Q ss_pred CCCHHHH-----HHHHHHH------cCCCEEEEcCCChhHHHHHHHHHHHc----CCcEEEEcccHHHHHHHHHhcCCCc
Q 036378 201 SFRDGQL-----EAIKMVL------DKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVI 265 (815)
Q Consensus 201 ~~~~~Q~-----~ai~~il------~g~d~li~apTGsGKTl~~~lp~l~~----~~~~lVl~P~~~L~~q~~~~l~~~~ 265 (815)
.|+++|+ ++|+.++ .|+|+|+++|||||||++|++|++.. +.++||++||++|+.|+++.+....
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 8999999 9999988 89999999999999999999998743 6799999999999999999998641
Q ss_pred eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh-------hcCcccEEEEeccccccccccCchHHH
Q 036378 266 HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT-------ATSLISLVVVDEAHCVSEWSHNFRPSY 338 (815)
Q Consensus 266 ~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~-------~~~~i~~lViDEaH~i~~~g~~fr~~~ 338 (815)
.. .... ... .++||+++...+....+. .+.++++|||||||++.. .+....
T Consensus 295 i~--~~~~----------------~l~-~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~---~~~~~~ 352 (673)
T 2wv9_A 295 VR--YLTP----------------AVQ-REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDP---ASIAAR 352 (673)
T ss_dssp CE--ECCC--------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCH---HHHHHH
T ss_pred ee--eecc----------------ccc-ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCc---cHHHHH
Confidence 11 0000 000 167777776543332221 267899999999999821 222222
Q ss_pred HHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHh
Q 036378 339 MRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHR 418 (815)
Q Consensus 339 ~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~ 418 (815)
..+ .... .....++++||||++..+.. +.. .+.++............ ...+. .+.+
T Consensus 353 ~~l-~~~~--~~~~~~vl~~SAT~~~~i~~-------~~~--------~~~~i~~v~~~~~~~~~---~~~l~---~l~~ 408 (673)
T 2wv9_A 353 GYI-ATRV--EAGEAAAIFMTATPPGTSDP-------FPD--------TNSPVHDVSSEIPDRAW---SSGFE---WITD 408 (673)
T ss_dssp HHH-HHHH--HTTSCEEEEECSSCTTCCCS-------SCC--------CSSCEEEEECCCCSSCC---SSCCH---HHHS
T ss_pred HHH-HHhc--cccCCcEEEEcCCCChhhhh-------hcc--------cCCceEEEeeecCHHHH---HHHHH---HHHh
Confidence 222 1111 12567999999999865321 000 01111111110111111 11111 1222
Q ss_pred hccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE--
Q 036378 419 SSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH-- 496 (815)
Q Consensus 419 ~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~-- 496 (815)
...+++|||++++.++.+++.|...++.+..+||+ +|.+++++|++|+.+|||||+++++|||+| +++|||
T Consensus 409 --~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 --YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred --CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 46789999999999999999999999999999994 799999999999999999999999999999 999998
Q ss_pred ------------------eCCCCCHHHHHHHHcccCCC-CCCceEEEEe---ccccHHHHHH
Q 036378 497 ------------------YSLPESLEEYVQEIGRAGRD-GRLSYCHLFL---DDITYFRLRS 536 (815)
Q Consensus 497 ------------------~d~P~s~~~y~Qr~GRaGR~-g~~g~~i~l~---~~~d~~~l~~ 536 (815)
|++|.+.++|+||+||+||. |+.|.|++|+ ++.|...++.
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ 543 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHW 543 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHH
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHH
Confidence 67999999999999999999 7899999996 4556444443
No 42
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8e-36 Score=358.09 Aligned_cols=327 Identities=18% Similarity=0.166 Sum_probs=237.4
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHc-CCCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLD-KKSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~-g~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
..|+++++++.+.+.+.. .| ..|++.|+++|+.++. +++++++||||||||+ ++|++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~--------------r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~ 134 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKI--------------RR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE 134 (773)
T ss_dssp CTTTCSBCCHHHHHHHHH--------------HT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHH--------------hh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc
Confidence 478889999999888887 36 7888999999988876 5679999999999999 5665522
Q ss_pred -----CCcEEEEcccHHHHHHHHHhcCCC--ceeee-eccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhh
Q 036378 241 -----PGLTLVVCPLVALMIDQLRHLPPV--IHGGF-LSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312 (815)
Q Consensus 241 -----~~~~lVl~P~~~L~~q~~~~l~~~--~~~~~-i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~ 312 (815)
+..++|++|+++|+.|+.+.+... ..... +....... .....+.+|+|+||+++........ .
T Consensus 135 ~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~-------~~~~~~~~I~v~T~G~l~r~l~~~~--~ 205 (773)
T 2xau_A 135 MPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE-------NKTSNKTILKYMTDGMLLREAMEDH--D 205 (773)
T ss_dssp CGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE-------EECCTTCSEEEEEHHHHHHHHHHST--T
T ss_pred cccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccc-------cccCCCCCEEEECHHHHHHHHhhCc--c
Confidence 456999999999999998877541 11100 00000000 0112357999999999987655442 2
Q ss_pred cCcccEEEEecccc-ccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCe
Q 036378 313 TSLISLVVVDEAHC-VSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNL 391 (815)
Q Consensus 313 ~~~i~~lViDEaH~-i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 391 (815)
+.++++|||||+|+ ..+. ++ ...++..+. ...+..++++||||+..+ .+.+++..... +.......++
T Consensus 206 l~~~~~lIlDEah~R~ld~--d~---~~~~l~~l~-~~~~~~~iIl~SAT~~~~---~l~~~~~~~~v--i~v~gr~~pv 274 (773)
T 2xau_A 206 LSRYSCIILDEAHERTLAT--DI---LMGLLKQVV-KRRPDLKIIIMSATLDAE---KFQRYFNDAPL--LAVPGRTYPV 274 (773)
T ss_dssp CTTEEEEEECSGGGCCHHH--HH---HHHHHHHHH-HHCTTCEEEEEESCSCCH---HHHHHTTSCCE--EECCCCCCCE
T ss_pred ccCCCEEEecCccccccch--HH---HHHHHHHHH-HhCCCceEEEEeccccHH---HHHHHhcCCCc--ccccCcccce
Confidence 77999999999996 3321 11 122223333 334567999999999764 35556643222 2211112223
Q ss_pred eEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhh-----------CCCcEEEecCCCCHHH
Q 036378 392 QLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCD-----------NSISVKSYHSGIPAKD 460 (815)
Q Consensus 392 ~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~-----------~g~~v~~~h~~~~~~~ 460 (815)
.. ..............+..+..+......++++|||+++++++.+++.|.+ .++.+..+||+|+.++
T Consensus 275 ~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~e 352 (773)
T 2xau_A 275 EL--YYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQ 352 (773)
T ss_dssp EE--ECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHH
T ss_pred EE--EEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHH
Confidence 22 2222222222222333344444444678999999999999999999985 6889999999999999
Q ss_pred HHHHHHHHh-----cCCceEEEEccccccccccCCccEEEEeCC------------------CCCHHHHHHHHcccCCCC
Q 036378 461 RSRIQELFC-----SNKIRVVVATVAFGMGLDKRDVGAVIHYSL------------------PESLEEYVQEIGRAGRDG 517 (815)
Q Consensus 461 R~~i~~~F~-----~g~~~VLVaT~~~~~GID~p~v~~VI~~d~------------------P~s~~~y~Qr~GRaGR~g 517 (815)
|.++++.|. +|+.+|||||+++++|||+|+|++||++++ |.|.++|+||+|||||.
T Consensus 353 R~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~- 431 (773)
T 2xau_A 353 QQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT- 431 (773)
T ss_dssp HGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-
T ss_pred HHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-
Confidence 999999999 999999999999999999999999999888 88999999999999999
Q ss_pred CCceEEEEeccccH
Q 036378 518 RLSYCHLFLDDITY 531 (815)
Q Consensus 518 ~~g~~i~l~~~~d~ 531 (815)
++|.|+.|+++.++
T Consensus 432 ~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 432 RPGKCFRLYTEEAF 445 (773)
T ss_dssp SSEEEEESSCHHHH
T ss_pred CCCEEEEEecHHHh
Confidence 79999999998876
No 43
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.4e-35 Score=343.62 Aligned_cols=329 Identities=15% Similarity=0.109 Sum_probs=211.3
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCC----
Q 036378 191 RLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPP---- 263 (815)
Q Consensus 191 ~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~---- 263 (815)
+.-++.+|. .|+|+|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++||+||++||.|..+.+..
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 345566785 89999999999999998 99999999999999999974 367899999999999998888776
Q ss_pred -CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhh-hchhhhhh-----hhhcCcccEEEEecccccc-cccc---
Q 036378 264 -VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF-LNADFLSI-----FTATSLISLVVVDEAHCVS-EWSH--- 332 (815)
Q Consensus 264 -~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L-~~~~~~~~-----~~~~~~i~~lViDEaH~i~-~~g~--- 332 (815)
++....+.+++..... .+.. .++|+|+||++| .+.+..+. ...+.++.++||||||.|+ +.+.
T Consensus 142 lgl~v~~i~GG~~~~~r-----~~~~-~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpL 215 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAK-----REAY-AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPL 215 (853)
T ss_dssp TTCCEEECCTTCCHHHH-----HHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEE
T ss_pred cCCeEEEEeCCCCHHHH-----HHhc-CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccc
Confidence 3556666666664322 2223 389999999999 45433221 1125789999999999998 5431
Q ss_pred ----------CchHHHHHHHHHHHHHh----------------cccceeE------------------------eeeccc
Q 036378 333 ----------NFRPSYMRLRASLLRAR----------------LNVECIL------------------------AMTATA 362 (815)
Q Consensus 333 ----------~fr~~~~~i~~~~~~~~----------------~~~~~vl------------------------~lSAT~ 362 (815)
+|.+....++..+.+.. ....+++ ++|||.
T Consensus 216 IiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~ 295 (853)
T 2fsf_A 216 IISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPAN 295 (853)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred cccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCccc
Confidence 24444444433332100 0123332 788885
Q ss_pred Ch---hHHHHHH--HHhcCCccce--------eec-------------------------cccCCCe-------------
Q 036378 363 TT---TTLRDVM--SALEIPLSNL--------IQK-------------------------AQLRDNL------------- 391 (815)
Q Consensus 363 ~~---~~~~~i~--~~l~~~~~~~--------~~~-------------------------~~~~~~l------------- 391 (815)
+. .+...+. ..+......+ +.. .....+.
T Consensus 296 ~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~ 375 (853)
T 2fsf_A 296 IMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRL 375 (853)
T ss_dssp -------------------------------------------------------------CCCCCEEEEEEEHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhh
Confidence 43 1111000 0000000000 000 0000000
Q ss_pred ------------------------eEEEEecC---------CccchhhhhhHHHHHHHHhh--ccccceEEEecchHHHH
Q 036378 392 ------------------------QLSVSLSG---------NNRQNERSAYVDEVFSFHRS--SKHYYILQISGKHFETD 436 (815)
Q Consensus 392 ------------------------~~~v~~~~---------~~~~~~~~~~~~~l~~l~~~--~~~~~~ivf~~s~~~~e 436 (815)
...++... +........+...+...+.. ..+.+++|||+|+..++
T Consensus 376 Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se 455 (853)
T 2fsf_A 376 YEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSE 455 (853)
T ss_dssp SSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHH
T ss_pred hhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 00000000 00001122233344443322 24678999999999999
Q ss_pred HHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCc-------------------------
Q 036378 437 LISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV------------------------- 491 (815)
Q Consensus 437 ~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v------------------------- 491 (815)
.|++.|...|+.+..+||++...++..+.++|+.| .|+||||++|||+|++..
T Consensus 456 ~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~ 533 (853)
T 2fsf_A 456 LVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 533 (853)
T ss_dssp HHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHh
Confidence 99999999999999999999999998888999988 699999999999999973
Q ss_pred ------------cEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEecccc
Q 036378 492 ------------GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDIT 530 (815)
Q Consensus 492 ------------~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d 530 (815)
.+||++++|.|.+.|.||+||+||.|.+|.++.|++.+|
T Consensus 534 ~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 534 QVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999998876
No 44
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.3e-34 Score=337.46 Aligned_cols=330 Identities=15% Similarity=0.056 Sum_probs=230.2
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+..++.+|+ .|+++|..+++.++.|+ |+.|+||+|||++|.+|++. .+..++||+||++||.|..+.+..
T Consensus 101 rEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 101 REAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp HHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 3456667899 99999999999999998 99999999999999999974 367899999999999998877765
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhh-hchhhhhh-----hhhcCcccEEEEecccccc-ccccC-
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF-LNADFLSI-----FTATSLISLVVVDEAHCVS-EWSHN- 333 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L-~~~~~~~~-----~~~~~~i~~lViDEaH~i~-~~g~~- 333 (815)
++..+.+.+++...+... .. .++|+|+||++| .+.+..+. ...+..+.++||||||.|+ +.+..
T Consensus 178 ~lGLsv~~i~gg~~~~~r~~-----~y-~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartP 251 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDERRV-----AY-NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTP 251 (922)
T ss_dssp HTTCCEEECCTTCCHHHHHH-----HH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSC
T ss_pred hcCCeEEEEeCCCCHHHHHH-----hc-CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccc
Confidence 456666667666543322 22 389999999999 44433221 1126689999999999998 43210
Q ss_pred ---------chHHHHHHHHHHHHHhc---------ccceeE-----------------eeecccCh---hHHHHHHH--H
Q 036378 334 ---------FRPSYMRLRASLLRARL---------NVECIL-----------------AMTATATT---TTLRDVMS--A 373 (815)
Q Consensus 334 ---------fr~~~~~i~~~~~~~~~---------~~~~vl-----------------~lSAT~~~---~~~~~i~~--~ 373 (815)
-..-|..+ ..+..... ...+++ ++|||.+. .+...+.. .
T Consensus 252 LiiSg~~~~~~~~y~~i-~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l 330 (922)
T 1nkt_A 252 LIISGPADGASNWYTEF-ARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKEL 330 (922)
T ss_dssp EEEEEECCCCHHHHHHH-HHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHH
T ss_pred eeecCCCCcchhHHHHH-HHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHH
Confidence 01223333 44455544 456787 88999764 22222211 1
Q ss_pred hcCCccceee-------ccc--------------------------cCCCeeEE--------------------------
Q 036378 374 LEIPLSNLIQ-------KAQ--------------------------LRDNLQLS-------------------------- 394 (815)
Q Consensus 374 l~~~~~~~~~-------~~~--------------------------~~~~l~~~-------------------------- 394 (815)
+......++. ..+ ...+....
T Consensus 331 ~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~ 410 (922)
T 1nkt_A 331 FSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAA 410 (922)
T ss_dssp CCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHH
Confidence 1111100000 000 00000000
Q ss_pred ---------EEecCC-----------ccchhhhhhHHHHHHHHh-h-ccccceEEEecchHHHHHHHHHHhhCCCcEEEe
Q 036378 395 ---------VSLSGN-----------NRQNERSAYVDEVFSFHR-S-SKHYYILQISGKHFETDLISRYLCDNSISVKSY 452 (815)
Q Consensus 395 ---------v~~~~~-----------~~~~~~~~~~~~l~~l~~-~-~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~ 452 (815)
+...+. ........+...+...+. . ..+.+++|||+|++.++.|++.|...|+.+..+
T Consensus 411 Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vL 490 (922)
T 1nkt_A 411 ELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVL 490 (922)
T ss_dssp HHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEe
Confidence 000000 000111222333333332 2 245789999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCc-----------------------------------------
Q 036378 453 HSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDV----------------------------------------- 491 (815)
Q Consensus 453 h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v----------------------------------------- 491 (815)
||++...++..+.++|+.| .|+||||++|||+|++.+
T Consensus 491 nak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (922)
T 1nkt_A 491 NAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEAS 568 (922)
T ss_dssp CSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999888888888888887 699999999999999975
Q ss_pred -----------cEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccH
Q 036378 492 -----------GAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531 (815)
Q Consensus 492 -----------~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~ 531 (815)
.+||++++|.|.+.|.|++||+||.|.+|.++.|++.+|.
T Consensus 569 ~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 569 KEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999998774
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.2e-35 Score=340.72 Aligned_cols=296 Identities=18% Similarity=0.159 Sum_probs=213.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCC-ce-eeeeccCCChHH
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IH-GGFLSSSQRPEE 278 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~-~~-~~~i~~~~~~~~ 278 (815)
.|+|+|.++++.++.++++++++|||+|||++|+.++...+.++|||+|+++|+.|+.+++.++ +. ...+.+...
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~--- 169 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK--- 169 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCB---
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcC---
Confidence 6999999999999999999999999999999999999988999999999999999999999983 33 344444332
Q ss_pred HHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEee
Q 036378 279 VAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAM 358 (815)
Q Consensus 279 ~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~l 358 (815)
...+|+|+||+.+..... .+ ..++++|||||||++... .|+ .+ . ...+..++++|
T Consensus 170 ----------~~~~Ivv~T~~~l~~~~~--~~--~~~~~liIvDEaH~~~~~--~~~----~~----~-~~~~~~~~l~l 224 (472)
T 2fwr_A 170 ----------ELKPLTVSTYDSAYVNAE--KL--GNRFMLLIFDEVHHLPAE--SYV----QI----A-QMSIAPFRLGL 224 (472)
T ss_dssp ----------CCCSEEEEEHHHHHHTHH--HH--TTTCSEEEEETGGGTTST--TTH----HH----H-HTCCCSEEEEE
T ss_pred ----------CcCCEEEEEcHHHHHHHH--Hh--cCCCCEEEEECCcCCCCh--HHH----HH----H-HhcCCCeEEEE
Confidence 147899999999876432 11 246999999999999864 333 22 2 23456789999
Q ss_pred ecccChhHHH--HHHHHhcCCccc----eeeccccCCCeeEEEEecC---------------------------------
Q 036378 359 TATATTTTLR--DVMSALEIPLSN----LIQKAQLRDNLQLSVSLSG--------------------------------- 399 (815)
Q Consensus 359 SAT~~~~~~~--~i~~~l~~~~~~----~~~~~~~~~~l~~~v~~~~--------------------------------- 399 (815)
|||+...... .+...++..... .+......+.....+....
T Consensus 225 SATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (472)
T 2fwr_A 225 TATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFN 304 (472)
T ss_dssp ESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSST
T ss_pred ecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHH
Confidence 9999742110 011111100000 0000000000000000000
Q ss_pred --------Cc-cc-------------hhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCC
Q 036378 400 --------NN-RQ-------------NERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIP 457 (815)
Q Consensus 400 --------~~-~~-------------~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~ 457 (815)
+. .. .........+..++....+.+++|||++++.++.+++.|. +..+||+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~ 379 (472)
T 2fwr_A 305 KIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTS 379 (472)
T ss_dssp TTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSC
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCC
Confidence 00 00 0011123444455555667899999999999999999984 567999999
Q ss_pred HHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCC-c--eEEEEeccc
Q 036378 458 AKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRL-S--YCHLFLDDI 529 (815)
Q Consensus 458 ~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~-g--~~i~l~~~~ 529 (815)
..+|.+++++|++|+.+|||||+++++|||+|++++||+++.|+++..|+|++||+||.|+. + .++.|++..
T Consensus 380 ~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 380 REEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999854 3 444455543
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.1e-36 Score=352.09 Aligned_cols=293 Identities=16% Similarity=0.044 Sum_probs=210.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH----cCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCC
Q 036378 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQ 274 (815)
Q Consensus 199 ~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~----~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~ 274 (815)
...++|+|+.+++.+++|+|+++++|||||||++|++|++. .+.++||++||++|+.|+.+.+...... .....
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~~v~--~~~~~ 246 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPIR--YQTPA 246 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE--ECCTT
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCCcee--Eeccc
Confidence 57889998888999999999999999999999999999874 3679999999999999999999742111 11110
Q ss_pred ChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccce
Q 036378 275 RPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC 354 (815)
Q Consensus 275 ~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~ 354 (815)
+.........+.++|.+.+...+... ..+.++++|||||||++. . +|...+..+...+ ..+..|
T Consensus 247 --------l~~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~~-~--~~~~~~~~i~~~l---~~~~~q 310 (618)
T 2whx_A 247 --------VKSDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFTD-P--CSVAARGYISTRV---EMGEAA 310 (618)
T ss_dssp --------SSCCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCCS-H--HHHHHHHHHHHHH---HHTSCE
T ss_pred --------ceeccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCCC-c--cHHHHHHHHHHHh---cccCcc
Confidence 00011112345555666555433222 126789999999999983 2 5555555553222 125679
Q ss_pred eEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHH
Q 036378 355 ILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFE 434 (815)
Q Consensus 355 vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~ 434 (815)
+++||||++..+.. ... .. ...+.+........ ....+. .+.+ ...+++|||++++.
T Consensus 311 ~il~SAT~~~~~~~----~~~-~~-----------~~~~~v~~~~~~~~--~~~ll~---~l~~--~~~~~LVF~~s~~~ 367 (618)
T 2whx_A 311 AIFMTATPPGSTDP----FPQ-SN-----------SPIEDIEREIPERS--WNTGFD---WITD--YQGKTVWFVPSIKA 367 (618)
T ss_dssp EEEECSSCTTCCCS----SCC-CS-----------SCEEEEECCCCSSC--CSSSCH---HHHH--CCSCEEEECSSHHH
T ss_pred EEEEECCCchhhhh----hhc-cC-----------CceeeecccCCHHH--HHHHHH---HHHh--CCCCEEEEECChhH
Confidence 99999999776321 111 00 01111111000000 001111 1222 36689999999999
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEE--------------------
Q 036378 435 TDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAV-------------------- 494 (815)
Q Consensus 435 ~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~V-------------------- 494 (815)
++.+++.|...++.+..+||+ +|.+++++|++|+.+|||||+++++|||+| |++|
T Consensus 368 a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~ 442 (618)
T 2whx_A 368 GNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVI 442 (618)
T ss_dssp HHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceE
Confidence 999999999999999999984 788899999999999999999999999997 9888
Q ss_pred EEeCCCCCHHHHHHHHcccCCCCC-CceEEEEec---cccHHHHHHh
Q 036378 495 IHYSLPESLEEYVQEIGRAGRDGR-LSYCHLFLD---DITYFRLRSL 537 (815)
Q Consensus 495 I~~d~P~s~~~y~Qr~GRaGR~g~-~g~~i~l~~---~~d~~~l~~~ 537 (815)
|+|++|.+.++|+||+||+||.|. .|.|++|++ ++|...++.+
T Consensus 443 i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~l 489 (618)
T 2whx_A 443 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWT 489 (618)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHH
T ss_pred EcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHH
Confidence 788889999999999999999965 899999997 6665555443
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.4e-36 Score=348.61 Aligned_cols=274 Identities=18% Similarity=0.159 Sum_probs=200.9
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCC--ceeeeeccCCChHHH
Q 036378 202 FRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV--IHGGFLSSSQRPEEV 279 (815)
Q Consensus 202 ~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~--~~~~~i~~~~~~~~~ 279 (815)
+.+.|+++++.+..+++++++||||||||++|.+|++..+.++||++||++|+.|+.+.+.+. ...........
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~---- 293 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT---- 293 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE----
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe----
Confidence 455667777777788999999999999999999999998889999999999999999887652 22222222211
Q ss_pred HHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccce--eEe
Q 036378 280 AETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVEC--ILA 357 (815)
Q Consensus 280 ~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~--vl~ 357 (815)
..++.+|+|+||++|+.. ..+. +.++++|||||||++.. +|...+..+ ++......+ +++
T Consensus 294 -------~~~~~~IlV~TPGrLl~~---~~l~-l~~l~~lVlDEAH~l~~---~~~~~l~~I----l~~l~~~~~~llil 355 (666)
T 3o8b_A 294 -------ITTGAPVTYSTYGKFLAD---GGCS-GGAYDIIICDECHSTDS---TTILGIGTV----LDQAETAGARLVVL 355 (666)
T ss_dssp -------ECCCCSEEEEEHHHHHHT---TSCC-TTSCSEEEETTTTCCSH---HHHHHHHHH----HHHTTTTTCSEEEE
T ss_pred -------ccCCCCEEEECcHHHHhC---CCcc-cCcccEEEEccchhcCc---cHHHHHHHH----HHhhhhcCCceEEE
Confidence 245689999999998432 2222 66899999999998753 566666555 333333333 677
Q ss_pred eecccChhHHHHHHHHhcCCccceeec-cccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHH
Q 036378 358 MTATATTTTLRDVMSALEIPLSNLIQK-AQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETD 436 (815)
Q Consensus 358 lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e 436 (815)
+|||++..+ .......... ......+. .. ... ..+......+++|||++++.++
T Consensus 356 ~SAT~~~~i--------~~~~p~i~~v~~~~~~~i~----~~--~~~-----------~~l~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 356 ATATPPGSV--------TVPHPNIEEVALSNTGEIP----FY--GKA-----------IPIEAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EESSCTTCC--------CCCCTTEEEEECBSCSSEE----ET--TEE-----------ECGGGSSSSEEEEECSCHHHHH
T ss_pred ECCCCCccc--------ccCCcceEEEeecccchhH----HH--Hhh-----------hhhhhccCCcEEEEeCCHHHHH
Confidence 899998731 1111111000 00000000 00 000 0022346789999999999999
Q ss_pred HHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEE----------EeC--------
Q 036378 437 LISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVI----------HYS-------- 498 (815)
Q Consensus 437 ~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI----------~~d-------- 498 (815)
.+++.|++.|+.+..+||+|++++ |.++..+|||||++++||||++ |++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999765 4567779999999999999996 99998 677
Q ss_pred ---CCCCHHHHHHHHcccCCCCCCceEEEEeccccHH
Q 036378 499 ---LPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYF 532 (815)
Q Consensus 499 ---~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~ 532 (815)
+|.+.++|+||+||+|| |++|. +.|+++.|..
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred cccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 89999999999999999 89999 9999887643
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=8.8e-36 Score=337.45 Aligned_cols=271 Identities=18% Similarity=0.092 Sum_probs=188.6
Q ss_pred HHcCCCEEEEcCCChhHHHHHHHHHHH----cCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhc
Q 036378 213 VLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQV 288 (815)
Q Consensus 213 il~g~d~li~apTGsGKTl~~~lp~l~----~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~ 288 (815)
+++|+|+++++|||||||++|++|++. .+.+++|++||++|+.|+++.+...... . ..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~-~-~~---------------- 66 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK-F-HT---------------- 66 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE-E-ES----------------
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE-E-ec----------------
Confidence 567999999999999999999999875 3679999999999999999999863211 1 00
Q ss_pred CCceEEEeChhhhhchhhhhhhh-------hcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecc
Q 036378 289 GAIKVLFVSPERFLNADFLSIFT-------ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTAT 361 (815)
Q Consensus 289 g~~~Ili~TPe~L~~~~~~~~~~-------~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT 361 (815)
+... .++||+++...+....+. .+.++++|||||||++ +. +|...+..+ .... .....++++||||
T Consensus 67 ~~~~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~--~~~~~~~~~-~~~~--~~~~~~~l~~SAT 139 (440)
T 1yks_A 67 QAFS-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DP--ASIAARGWA-AHRA--RANESATILMTAT 139 (440)
T ss_dssp SCCC-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SH--HHHHHHHHH-HHHH--HTTSCEEEEECSS
T ss_pred ccce-eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Cc--chHHHHHHH-HHHh--ccCCceEEEEeCC
Confidence 0111 488999887654433322 1578999999999998 22 333333222 2222 1356799999999
Q ss_pred cChhHHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHH
Q 036378 362 ATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRY 441 (815)
Q Consensus 362 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~ 441 (815)
+++.+.... .. ...+............. ..+. .+.+ ...+++|||++++.++.+++.
T Consensus 140 ~~~~~~~~~-----~~----------~~~~~~~~~~~~~~~~~---~~~~---~l~~--~~~~~lVF~~s~~~a~~l~~~ 196 (440)
T 1yks_A 140 PPGTSDEFP-----HS----------NGEIEDVQTDIPSEPWN---TGHD---WILA--DKRPTAWFLPSIRAANVMAAS 196 (440)
T ss_dssp CTTCCCSSC-----CC----------SSCEEEEECCCCSSCCS---SSCH---HHHH--CCSCEEEECSCHHHHHHHHHH
T ss_pred CCchhhhhh-----hc----------CCCeeEeeeccChHHHH---HHHH---HHHh--cCCCEEEEeCCHHHHHHHHHH
Confidence 987643100 00 01111100011111111 1111 1121 357899999999999999999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE-------------------eCCCCC
Q 036378 442 LCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH-------------------YSLPES 502 (815)
Q Consensus 442 L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~-------------------~d~P~s 502 (815)
|+..++.+..+|| ++|.+++++|++|+.+|||||+++++|||+| +++||| ++.|.+
T Consensus 197 L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~ 271 (440)
T 1yks_A 197 LRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRIS 271 (440)
T ss_dssp HHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECC
T ss_pred HHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccC
Confidence 9999999999999 4688999999999999999999999999999 999997 899999
Q ss_pred HHHHHHHHcccCCC-CCCceEEEEe---ccccHHHHHH
Q 036378 503 LEEYVQEIGRAGRD-GRLSYCHLFL---DDITYFRLRS 536 (815)
Q Consensus 503 ~~~y~Qr~GRaGR~-g~~g~~i~l~---~~~d~~~l~~ 536 (815)
+++|+||+||+||. |++|.|++|+ ++.|...++.
T Consensus 272 ~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~ 309 (440)
T 1yks_A 272 ASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCW 309 (440)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred HHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhh
Confidence 99999999999997 7899999997 5666544443
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=6.2e-35 Score=332.44 Aligned_cols=274 Identities=16% Similarity=0.056 Sum_probs=188.6
Q ss_pred HHHHHcCCCEEEEcCCChhHHHHHHHHHHH----cCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHH
Q 036378 210 IKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----LPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRL 285 (815)
Q Consensus 210 i~~il~g~d~li~apTGsGKTl~~~lp~l~----~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 285 (815)
...+..++++++++|||||||++|++|++. .+.++||++||++|+.|+++.+... ...........
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~-~v~~~~~~~~~--------- 84 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL-PVRYQTSAVQR--------- 84 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS-CEEECC--------------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc-eEeEEeccccc---------
Confidence 334556889999999999999999999885 4789999999999999999999842 11111111100
Q ss_pred HhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChh
Q 036378 286 IQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTT 365 (815)
Q Consensus 286 l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~ 365 (815)
-......+.++|.+.+...+... . .+.++++|||||||++.. .+......+ ... ...+..++++||||++..
T Consensus 85 ~~t~~~~i~~~~~~~l~~~l~~~-~-~l~~~~~iViDEaH~~~~---~~~~~~~~~-~~~--~~~~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 85 EHQGNEIVDVMCHATLTHRLMSP-N-RVPNYNLFVMDEAHFTDP---ASIAARGYI-ATK--VELGEAAAIFMTATPPGT 156 (459)
T ss_dssp ---CCCSEEEEEHHHHHHHHHSC-C--CCCCSEEEESSTTCCSH---HHHHHHHHH-HHH--HHTTSCEEEEECSSCTTC
T ss_pred CCCCCcEEEEEchHHHHHHhhcc-c-cccCCcEEEEECCccCCc---hhhHHHHHH-HHH--hccCCccEEEEEcCCCcc
Confidence 01223457777877766543332 1 267899999999998421 000000111 111 123567999999999865
Q ss_pred HHHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhC
Q 036378 366 TLRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDN 445 (815)
Q Consensus 366 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~ 445 (815)
+.. +.. ...++............. .... .+.. ...+++|||++++.++.+++.|...
T Consensus 157 ~~~-----~~~----------~~~pi~~~~~~~~~~~~~---~~~~----~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~ 213 (459)
T 2z83_A 157 TDP-----FPD----------SNAPIHDLQDEIPDRAWS---SGYE----WITE-YAGKTVWFVASVKMGNEIAMCLQRA 213 (459)
T ss_dssp CCS-----SCC----------CSSCEEEEECCCCSSCCS---SCCH----HHHH-CCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred hhh-----hcc----------CCCCeEEecccCCcchhH---HHHH----HHHh-cCCCEEEEeCChHHHHHHHHHHHhc
Confidence 311 000 011111110011111110 1111 1111 2578999999999999999999999
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEE--------------------eCCCCCHHH
Q 036378 446 SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIH--------------------YSLPESLEE 505 (815)
Q Consensus 446 g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~--------------------~d~P~s~~~ 505 (815)
|+.+..+|++ +|.++++.|++|+.+|||||+++++|||+|+ ++||+ |+.|.|.++
T Consensus 214 g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~ 288 (459)
T 2z83_A 214 GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSAS 288 (459)
T ss_dssp TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHH
T ss_pred CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHH
Confidence 9999999995 6888999999999999999999999999999 99999 779999999
Q ss_pred HHHHHcccCCCCC-CceEEEEeccc
Q 036378 506 YVQEIGRAGRDGR-LSYCHLFLDDI 529 (815)
Q Consensus 506 y~Qr~GRaGR~g~-~g~~i~l~~~~ 529 (815)
|+||+|||||.|+ +|.|++|+.+.
T Consensus 289 ~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 289 AAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999997 99999999875
No 50
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.7e-33 Score=318.03 Aligned_cols=267 Identities=15% Similarity=0.051 Sum_probs=184.2
Q ss_pred cCCCEEEEcCCChhHHHHHHHHHH----HcCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCC
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPAM----ILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGA 290 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~l----~~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~ 290 (815)
+|+++|+++|||||||++|++|++ ..+.+++|++||++|+.|+++.+.. +......... ......+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~-~~v~~~~~~~---------~~~~~~~ 70 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG-EPIRYMTPAV---------QSERTGN 70 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-SCEEEC------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC-CeEEEEecCc---------cccCCCC
Confidence 378999999999999999999887 3477999999999999999999873 2222222111 1122223
Q ss_pred ceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHH
Q 036378 291 IKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDV 370 (815)
Q Consensus 291 ~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i 370 (815)
..+.++|.+.+...+.. ... +.++++|||||||++..+ +......+ .... .....++++||||+++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~-~~~-~~~l~~vViDEaH~~~~~---~~~~~~~l-~~~~--~~~~~~~l~~SAT~~~~~~--- 139 (431)
T 2v6i_A 71 EIVDFMCHSTFTMKLLQ-GVR-VPNYNLYIMDEAHFLDPA---SVAARGYI-ETRV--SMGDAGAIFMTATPPGTTE--- 139 (431)
T ss_dssp CSEEEEEHHHHHHHHHH-TCC-CCCCSEEEEESTTCCSHH---HHHHHHHH-HHHH--HTTSCEEEEEESSCTTCCC---
T ss_pred ceEEEEchHHHHHHHhc-Ccc-ccCCCEEEEeCCccCCcc---HHHHHHHH-HHHh--hCCCCcEEEEeCCCCcchh---
Confidence 45667788877654443 222 678999999999997432 22222222 1111 2356899999999987421
Q ss_pred HHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEE
Q 036378 371 MSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVK 450 (815)
Q Consensus 371 ~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~ 450 (815)
.+. ..+.++............ ...+ ..+.. ...+++|||++++.++.+++.|.+.++.+.
T Consensus 140 ----~~~--------~~~~~i~~~~~~~~~~~~---~~~~----~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~ 199 (431)
T 2v6i_A 140 ----AFP--------PSNSPIIDEETRIPDKAW---NSGY----EWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVL 199 (431)
T ss_dssp ----SSC--------CCSSCCEEEECCCCSSCC---SSCC----HHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred ----hhc--------CCCCceeeccccCCHHHH---HHHH----HHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 010 001111111001111110 0111 11222 256899999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccE-----------------EEEeCCCCCHHHHHHHHccc
Q 036378 451 SYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGA-----------------VIHYSLPESLEEYVQEIGRA 513 (815)
Q Consensus 451 ~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~-----------------VI~~d~P~s~~~y~Qr~GRa 513 (815)
.+||+ +|.+++++|++|+.+|||||+++++|||+| +.+ ||+++.|.++++|+||+||+
T Consensus 200 ~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~ 274 (431)
T 2v6i_A 200 YLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRI 274 (431)
T ss_dssp EESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTS
T ss_pred EeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhcc
Confidence 99997 588899999999999999999999999999 554 68899999999999999999
Q ss_pred CCCCCCceEEEEec
Q 036378 514 GRDGRLSYCHLFLD 527 (815)
Q Consensus 514 GR~g~~g~~i~l~~ 527 (815)
||.|..+.|++++.
T Consensus 275 GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 275 GRNPEKLGDIYAYS 288 (431)
T ss_dssp SCCTTCCCCEEEEC
T ss_pred CCCCCCCCeEEEEc
Confidence 99996555555553
No 51
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1e-32 Score=324.27 Aligned_cols=283 Identities=16% Similarity=0.159 Sum_probs=196.5
Q ss_pred HHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhc
Q 036378 210 IKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQV 288 (815)
Q Consensus 210 i~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~ 288 (815)
....++|++++++||||||||+ .++..+...+.++|++||++|+.|+++++.+ ++....+.+
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~-~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG---------------- 211 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTY-HAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTG---------------- 211 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHH-HHHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECS----------------
T ss_pred HHHhcCCCEEEEEcCCCCCHHH-HHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEEC----------------
Confidence 3455689999999999999999 4444455557789999999999999999987 444333333
Q ss_pred CCceEEEeChhhhhchhhhh--hhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhH
Q 036378 289 GAIKVLFVSPERFLNADFLS--IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTT 366 (815)
Q Consensus 289 g~~~Ili~TPe~L~~~~~~~--~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~ 366 (815)
+.+++++||+++.+.+... .......+++|||||||++++. +|...+..+ +........+++++|||. ..
T Consensus 212 -~~~~iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~--~~g~~~~~~---l~~l~~~~i~il~~SAT~--~~ 283 (677)
T 3rc3_A 212 -EERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDP--ARGWAWTRA---LLGLCAEEVHLCGEPAAI--DL 283 (677)
T ss_dssp -SCEECCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCT--TTHHHHHHH---HHHCCEEEEEEEECGGGH--HH
T ss_pred -CeeEEecCCCcccceeEecHhHhhhcccCCEEEEecceecCCc--cchHHHHHH---HHccCccceEEEeccchH--HH
Confidence 2334444444443322211 1111457899999999999865 555555544 222223567899999983 34
Q ss_pred HHHHHHHhcCCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCC
Q 036378 367 LRDVMSALEIPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNS 446 (815)
Q Consensus 367 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g 446 (815)
...+....+.... +........+.+ ...... .+ ... ....++||+++++++.+++.|.+.+
T Consensus 284 i~~l~~~~~~~~~--v~~~~r~~~l~~----~~~~l~-----------~l-~~~-~~g~iIf~~s~~~ie~la~~L~~~g 344 (677)
T 3rc3_A 284 VMELMYTTGEEVE--VRDYKRLTPISV----LDHALE-----------SL-DNL-RPGDCIVCFSKNDIYSVSRQIEIRG 344 (677)
T ss_dssp HHHHHHHHTCCEE--EEECCCSSCEEE----CSSCCC-----------SG-GGC-CTTEEEECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCceE--EEEeeecchHHH----HHHHHH-----------HH-Hhc-CCCCEEEEcCHHHHHHHHHHHHhcC
Confidence 4444444432211 111111111111 000000 11 111 2345888999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhc--CCceEEEEccccccccccCCccEEEEeCC--------------CCCHHHHHHHH
Q 036378 447 ISVKSYHSGIPAKDRSRIQELFCS--NKIRVVVATVAFGMGLDKRDVGAVIHYSL--------------PESLEEYVQEI 510 (815)
Q Consensus 447 ~~v~~~h~~~~~~~R~~i~~~F~~--g~~~VLVaT~~~~~GID~p~v~~VI~~d~--------------P~s~~~y~Qr~ 510 (815)
+.+..+||+|++++|.++++.|++ |+.+|||||+++++|||+ +|++||++++ |.+.++|+||+
T Consensus 345 ~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~ 423 (677)
T 3rc3_A 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 423 (677)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHH
T ss_pred CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHh
Confidence 999999999999999999999999 899999999999999999 9999999999 77999999999
Q ss_pred cccCCCCCC---ceEEEEeccccHHHHHHhh
Q 036378 511 GRAGRDGRL---SYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 511 GRaGR~g~~---g~~i~l~~~~d~~~l~~~~ 538 (815)
|||||.|.. |.|++++.. +...++++.
T Consensus 424 GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~ 453 (677)
T 3rc3_A 424 GRAGRFSSRFKEGEVTTMNHE-DLSLLKEIL 453 (677)
T ss_dssp TTBTCTTSSCSSEEEEESSTT-HHHHHHHHH
T ss_pred cCCCCCCCCCCCEEEEEEecc-hHHHHHHHH
Confidence 999999964 777766544 444555544
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.7e-32 Score=323.12 Aligned_cols=298 Identities=17% Similarity=0.166 Sum_probs=187.7
Q ss_pred CCCCHHHHHHHHHHHc----C-CCEEEEcCCChhHHHHHHHHHHH------------cCCcEEEEcccHHHHHHHH-Hhc
Q 036378 200 DSFRDGQLEAIKMVLD----K-KSTMLVLPTGAGKSLCYQIPAMI------------LPGLTLVVCPLVALMIDQL-RHL 261 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~----g-~d~li~apTGsGKTl~~~lp~l~------------~~~~~lVl~P~~~L~~q~~-~~l 261 (815)
..+||+|.+||+.++. | +++++++|||+|||++++..+.. ..+++|||+|+++|+.|+. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3799999999999886 4 56899999999999997655532 3578999999999999999 788
Q ss_pred CCCceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhh----hhhhhhcCcccEEEEeccccccccccCchHH
Q 036378 262 PPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF----LSIFTATSLISLVVVDEAHCVSEWSHNFRPS 337 (815)
Q Consensus 262 ~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~----~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~ 337 (815)
..+......... ....+..+|+|+||++|..... ...+. ...+++|||||||++...+ ...
T Consensus 257 ~~~~~~~~~~~~-----------~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~-~~~~~lvIiDEaH~~~~~~---~~~ 321 (590)
T 3h1t_A 257 TPFGDARHKIEG-----------GKVVKSREIYFAIYQSIASDERRPGLYKEFP-QDFFDLIIIDECHRGSARD---NSN 321 (590)
T ss_dssp TTTCSSEEECCC-------------CCSSCSEEEEEGGGC------CCGGGGSC-TTSCSEEEESCCC------------
T ss_pred Hhcchhhhhhhc-----------cCCCCCCcEEEEEhhhhccccccccccccCC-CCccCEEEEECCccccccc---hHH
Confidence 774332221111 1123468999999999987532 11222 4568999999999997532 123
Q ss_pred HHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCccce-----eeccccCCCeeEEEEecCCc-----------
Q 036378 338 YMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLSNL-----IQKAQLRDNLQLSVSLSGNN----------- 401 (815)
Q Consensus 338 ~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~l~~~v~~~~~~----------- 401 (815)
|..+ +. ..+..++++|||||...........++.+.... +......+.....+......
T Consensus 322 ~~~i----l~-~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
T 3h1t_A 322 WREI----LE-YFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVD 396 (590)
T ss_dssp CHHH----HH-HSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------
T ss_pred HHHH----HH-hCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccc
Confidence 3333 22 234568999999999776666666665432211 11111111111111111000
Q ss_pred -----------cch----------hhhhhHHHHHHHHhh-ccccceEEEecchHHHHHHHHHHhhCCCc--------EEE
Q 036378 402 -----------RQN----------ERSAYVDEVFSFHRS-SKHYYILQISGKHFETDLISRYLCDNSIS--------VKS 451 (815)
Q Consensus 402 -----------~~~----------~~~~~~~~l~~l~~~-~~~~~~ivf~~s~~~~e~l~~~L~~~g~~--------v~~ 451 (815)
... ........+...+.. ....+++|||+++.+++.+++.|.+.+.. +..
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 397 RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 000 000011112222222 23478999999999999999999875543 788
Q ss_pred ecCCCCHHHHHHHHHHHhcCCce---EEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCC
Q 036378 452 YHSGIPAKDRSRIQELFCSNKIR---VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGR 518 (815)
Q Consensus 452 ~h~~~~~~~R~~i~~~F~~g~~~---VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~ 518 (815)
+||+++. +|.+++++|++|+.+ |||||+++++|||+|++++||+++.|.|...|+|++||+||.+.
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999864 799999999998866 88999999999999999999999999999999999999999875
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.98 E-value=4.6e-32 Score=333.85 Aligned_cols=317 Identities=18% Similarity=0.198 Sum_probs=216.7
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEcCCChhHHHHHHHHHHH---c--CCcEEEEcccHHHHHHHHHhcCCCc--eeeee
Q 036378 200 DSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMI---L--PGLTLVVCPLVALMIDQLRHLPPVI--HGGFL 270 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g--~d~li~apTGsGKTl~~~lp~l~---~--~~~~lVl~P~~~L~~q~~~~l~~~~--~~~~i 270 (815)
..|+|+|.+++..++.. ..+|++++||+|||++++..+.. . .+++|||+|+ +|+.||..++.+.+ +...+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 47999999999998874 48899999999999998777643 2 3489999999 99999999996632 22222
Q ss_pred ccCCChHHHHHHHHH--HhcCCceEEEeChhhhhchhh-hhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHH
Q 036378 271 SSSQRPEEVAETIRL--IQVGAIKVLFVSPERFLNADF-LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR 347 (815)
Q Consensus 271 ~~~~~~~~~~~~~~~--l~~g~~~Ili~TPe~L~~~~~-~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~ 347 (815)
. .......... ......+|+|+|++.+..... ...+. ..++++|||||||++..++......|..+ ..+.
T Consensus 231 ~----~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~-~~~~dlVIvDEAH~~kn~~~~~s~~~~~l-~~L~- 303 (968)
T 3dmq_A 231 D----DERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLC-EAEWDLLVVDEAHHLVWSEDAPSREYQAI-EQLA- 303 (968)
T ss_dssp C----HHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHH-TSCCCEEEECCSSCCCCBTTBCCHHHHHH-HHHH-
T ss_pred c----cchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhh-hcCCCEEEehhhHhhcCCCCcchHHHHHH-HHHh-
Confidence 1 1111111110 111257899999999965322 22233 45899999999999986654444445444 2221
Q ss_pred HhcccceeEeeecccChhHHHHHHH---HhcCCc--------------------------c------------cee----
Q 036378 348 ARLNVECILAMTATATTTTLRDVMS---ALEIPL--------------------------S------------NLI---- 382 (815)
Q Consensus 348 ~~~~~~~vl~lSAT~~~~~~~~i~~---~l~~~~--------------------------~------------~~~---- 382 (815)
...+.+++|||||......++.. .+.... . ..+
T Consensus 304 --~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 304 --EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp --TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred --hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 13456999999996522111111 000000 0 000
Q ss_pred -------------------------------------e------ccc-cCCCeeEEEEecCC------------------
Q 036378 383 -------------------------------------Q------KAQ-LRDNLQLSVSLSGN------------------ 400 (815)
Q Consensus 383 -------------------------------------~------~~~-~~~~l~~~v~~~~~------------------ 400 (815)
. ..+ .+....+.+.....
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 0 000 00000000000000
Q ss_pred --------------------ccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhh-CCCcEEEecCCCCHH
Q 036378 401 --------------------NRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCD-NSISVKSYHSGIPAK 459 (815)
Q Consensus 401 --------------------~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~-~g~~v~~~h~~~~~~ 459 (815)
........+...+..++......+++|||+++..++.+++.|.. .|+.+..+||+|+..
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 00001112344455555556788999999999999999999995 699999999999999
Q ss_pred HHHHHHHHHhcCC--ceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEe
Q 036378 460 DRSRIQELFCSNK--IRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFL 526 (815)
Q Consensus 460 ~R~~i~~~F~~g~--~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~ 526 (815)
+|.+++++|++|+ ++|||||+++++|||+|++++||+||+|+++..|+|++||+||.|+.+.|++++
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 9999999999998 999999999999999999999999999999999999999999999998766664
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=5.2e-30 Score=295.92 Aligned_cols=307 Identities=16% Similarity=0.180 Sum_probs=206.8
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCChhHHHHHHHHHHHc-----CCcEEEEcccHHHHHHHHHhcCCCce---e
Q 036378 200 DSFRDGQLEAIKMVL----DKKSTMLVLPTGAGKSLCYQIPAMIL-----PGLTLVVCPLVALMIDQLRHLPPVIH---G 267 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il----~g~d~li~apTGsGKTl~~~lp~l~~-----~~~~lVl~P~~~L~~q~~~~l~~~~~---~ 267 (815)
..++|+|.+++..+. .++++|+.++||+|||++++..+... .+.+|||+| .+|+.||.+++.++.. .
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 369999999998874 57899999999999999876554322 368999999 5699999999987432 2
Q ss_pred eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHH
Q 036378 268 GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLR 347 (815)
Q Consensus 268 ~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~ 347 (815)
..+.+.... ...+.++|+|+|++.+..... +. ...+++|||||||++...+. ..+ ..+.
T Consensus 115 ~~~~g~~~~---------~~~~~~~ivi~t~~~l~~~~~---l~-~~~~~~vIvDEaH~~kn~~~---~~~-----~~l~ 173 (500)
T 1z63_A 115 AVFHEDRSK---------IKLEDYDIILTTYAVLLRDTR---LK-EVEWKYIVIDEAQNIKNPQT---KIF-----KAVK 173 (500)
T ss_dssp EECSSSTTS---------CCGGGSSEEEEEHHHHTTCHH---HH-TCCEEEEEEETGGGGSCTTS---HHH-----HHHH
T ss_pred EEEecCchh---------ccccCCcEEEeeHHHHhccch---hc-CCCcCEEEEeCccccCCHhH---HHH-----HHHH
Confidence 222222211 112357999999999987543 22 34789999999999974321 111 1222
Q ss_pred HhcccceeEeeecccChhHHHHHHHHhcCCcc----------------------------------ceeec--------c
Q 036378 348 ARLNVECILAMTATATTTTLRDVMSALEIPLS----------------------------------NLIQK--------A 385 (815)
Q Consensus 348 ~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~----------------------------------~~~~~--------~ 385 (815)
. ......++|||||......++...+.+-.+ .+++. .
T Consensus 174 ~-l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~ 252 (500)
T 1z63_A 174 E-LKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIIN 252 (500)
T ss_dssp T-SCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHT
T ss_pred h-hccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhh
Confidence 2 245678999999977655554433211100 01100 0
Q ss_pred ccCCCeeEEEEecCCccchh--------------------------------------------------hhhhHHHHHH
Q 036378 386 QLRDNLQLSVSLSGNNRQNE--------------------------------------------------RSAYVDEVFS 415 (815)
Q Consensus 386 ~~~~~l~~~v~~~~~~~~~~--------------------------------------------------~~~~~~~l~~ 415 (815)
..++.....+.......... ...++..+..
T Consensus 253 ~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~ 332 (500)
T 1z63_A 253 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 332 (500)
T ss_dssp TSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHH
Confidence 11121222221111100000 0011111222
Q ss_pred HHhh--ccccceEEEecchHHHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHHHhcC-Cce-EEEEccccccccccCC
Q 036378 416 FHRS--SKHYYILQISGKHFETDLISRYLCDN-SISVKSYHSGIPAKDRSRIQELFCSN-KIR-VVVATVAFGMGLDKRD 490 (815)
Q Consensus 416 l~~~--~~~~~~ivf~~s~~~~e~l~~~L~~~-g~~v~~~h~~~~~~~R~~i~~~F~~g-~~~-VLVaT~~~~~GID~p~ 490 (815)
++.. ..+.+++|||+++..++.+++.|... |+.+..+||+++..+|.+++++|++| ..+ +||+|+++++|+|+++
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 2222 24678999999999999999999985 99999999999999999999999998 565 7999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHHcccCCCCCCceE--EEEeccc
Q 036378 491 VGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC--HLFLDDI 529 (815)
Q Consensus 491 v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~--i~l~~~~ 529 (815)
+++||++|+|+++..|.|++||++|.|+...+ +.|+...
T Consensus 413 ~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 413 ANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999999999999999999999988665 4445544
No 55
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.96 E-value=6.1e-28 Score=275.53 Aligned_cols=320 Identities=18% Similarity=0.129 Sum_probs=223.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---CCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---PGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+.-++.+|. .+++.|.-..-.+..|+ |+.|.||+|||+++.+|++.. +..+.||+|+..||.+-.+.+..
T Consensus 65 REAa~R~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 65 REAARRTLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp HHHHHHHTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHH
Confidence 3456667785 47888988888887777 999999999999999999743 78899999999999997777665
Q ss_pred --Cceeeeecc--------------------------------------------------CCChHHHHHHHHHHhcCCc
Q 036378 264 --VIHGGFLSS--------------------------------------------------SQRPEEVAETIRLIQVGAI 291 (815)
Q Consensus 264 --~~~~~~i~~--------------------------------------------------~~~~~~~~~~~~~l~~g~~ 291 (815)
++..+.+.. .+...++.... .+
T Consensus 142 ~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY------~~ 215 (822)
T 3jux_A 142 FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY------LC 215 (822)
T ss_dssp HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH------HS
T ss_pred HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh------cC
Confidence 344444444 23334444443 37
Q ss_pred eEEEeChhhhhchhhhhhhh------hcCcccEEEEeccccccc-c--------c----------------------cC-
Q 036378 292 KVLFVSPERFLNADFLSIFT------ATSLISLVVVDEAHCVSE-W--------S----------------------HN- 333 (815)
Q Consensus 292 ~Ili~TPe~L~~~~~~~~~~------~~~~i~~lViDEaH~i~~-~--------g----------------------~~- 333 (815)
+|+|+|..-|.-...++.+. ..+.+.+.||||+|.++= - | .+
T Consensus 216 DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy 295 (822)
T 3jux_A 216 DVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDF 295 (822)
T ss_dssp SEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTE
T ss_pred CCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcE
Confidence 99999998875333232211 135789999999998742 0 0 00
Q ss_pred ----------------------------ch----HHHHHHHHHHHHHh--c-----------------------------
Q 036378 334 ----------------------------FR----PSYMRLRASLLRAR--L----------------------------- 350 (815)
Q Consensus 334 ----------------------------fr----~~~~~i~~~~~~~~--~----------------------------- 350 (815)
|. +-+..+ ...++.. +
T Consensus 296 ~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i-~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~ 374 (822)
T 3jux_A 296 TVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHL-INALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRY 374 (822)
T ss_dssp EECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHH-HHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCC
T ss_pred EEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHH-HHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcC
Confidence 00 111111 1111110 0
Q ss_pred ---------------------------------ccceeEeeecccChhHHHHHHHHhcCCccceeeccccCCCeeEEE--
Q 036378 351 ---------------------------------NVECILAMTATATTTTLRDVMSALEIPLSNLIQKAQLRDNLQLSV-- 395 (815)
Q Consensus 351 ---------------------------------~~~~vl~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~v-- 395 (815)
--..+.+||+|+..+. ..+.+.+++. ++.-+..++......
T Consensus 375 s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~-~Ef~~iY~l~---vv~IPtnkp~~R~d~~d 450 (822)
T 3jux_A 375 SGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEE-SEFVQVYGME---VVVIPTHKPMIRKDHDD 450 (822)
T ss_dssp GGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGH-HHHHHHSCCC---EEECCCSSCCCCEECCC
T ss_pred chHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHH-HHHHHHhCCe---EEEECCCCCcceeecCc
Confidence 0146899999997754 4566666654 222333333332221
Q ss_pred -EecCCccchhhhhhHHHHHHHHhh--ccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCC
Q 036378 396 -SLSGNNRQNERSAYVDEVFSFHRS--SKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNK 472 (815)
Q Consensus 396 -~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~ 472 (815)
.... ...+...+...+.. ..+.+++|||+|++.++.++..|...|+.+..+||++...++..+..+++.|
T Consensus 451 ~vy~t------~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g- 523 (822)
T 3jux_A 451 LVFRT------QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG- 523 (822)
T ss_dssp EEESS------HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT-
T ss_pred EEEec------HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC-
Confidence 1111 11222333333322 2567999999999999999999999999999999997777777677777766
Q ss_pred ceEEEEccccccccccC--------CccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccH
Q 036378 473 IRVVVATVAFGMGLDKR--------DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITY 531 (815)
Q Consensus 473 ~~VLVaT~~~~~GID~p--------~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~ 531 (815)
.|+||||++|||+|++ ++.+||++++|.+.+.|.||+||+||.|.+|.+++|++.+|-
T Consensus 524 -~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 524 -MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp -CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred -eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 5999999999999998 566999999999999999999999999999999999998873
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=7.8e-27 Score=276.37 Aligned_cols=315 Identities=17% Similarity=0.199 Sum_probs=209.8
Q ss_pred CCCHHHHHHHHHHH---------cCCCEEEEcCCChhHHHHHHHHHHHc----------CCcEEEEcccHHHHHHHHHhc
Q 036378 201 SFRDGQLEAIKMVL---------DKKSTMLVLPTGAGKSLCYQIPAMIL----------PGLTLVVCPLVALMIDQLRHL 261 (815)
Q Consensus 201 ~~~~~Q~~ai~~il---------~g~d~li~apTGsGKTl~~~lp~l~~----------~~~~lVl~P~~~L~~q~~~~l 261 (815)
.++|+|.+++..+. .+..+|+..+||+|||+..+..+... ...+|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999999875 34578999999999999876665422 2458999997 8999999999
Q ss_pred CCCcee----eeeccCCChHHHHHHHHHHhcC-----CceEEEeChhhhhchhhhhhhhhcCcccEEEEecccccccccc
Q 036378 262 PPVIHG----GFLSSSQRPEEVAETIRLIQVG-----AIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSH 332 (815)
Q Consensus 262 ~~~~~~----~~i~~~~~~~~~~~~~~~l~~g-----~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~ 332 (815)
.++... ..+..+ ...+....+...... ..+|+|+|++.+.... ..+. ...+++||+||||++...
T Consensus 134 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~-~~~~~~vI~DEaH~ikn~-- 207 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGG-SKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLH-KGKVGLVICDEGHRLKNS-- 207 (644)
T ss_dssp HHHHGGGCCEEEECSS-CHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTT-TSCCCEEEETTGGGCCTT--
T ss_pred HHHcCCCeeEEEEeCC-CHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhh-cCCccEEEEECceecCCh--
Confidence 885432 222222 223333333333221 4789999999986532 2222 347899999999999642
Q ss_pred CchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCc----------------------------------
Q 036378 333 NFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPL---------------------------------- 378 (815)
Q Consensus 333 ~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~---------------------------------- 378 (815)
-...+.. +.. ......++|||||......++...+.+-.
T Consensus 208 -~~~~~~a-----l~~-l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 208 -DNQTYLA-----LNS-MNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp -CHHHHHH-----HHH-HCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred -hhHHHHH-----HHh-cccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 1112222 222 24457899999997654322221110000
Q ss_pred ------------cceee------ccccCCCeeEEEEecCCccc-------------------------------------
Q 036378 379 ------------SNLIQ------KAQLRDNLQLSVSLSGNNRQ------------------------------------- 403 (815)
Q Consensus 379 ------------~~~~~------~~~~~~~l~~~v~~~~~~~~------------------------------------- 403 (815)
..+++ ...+++.....+........
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c 360 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC 360 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence 00000 00111111211111100000
Q ss_pred ----------------------------------hhhhhhHHHHHHHHhh---ccccceEEEecchHHHHHHHHHHhhCC
Q 036378 404 ----------------------------------NERSAYVDEVFSFHRS---SKHYYILQISGKHFETDLISRYLCDNS 446 (815)
Q Consensus 404 ----------------------------------~~~~~~~~~l~~l~~~---~~~~~~ivf~~s~~~~e~l~~~L~~~g 446 (815)
.....++..+..++.. ..+.+++||++.+..++.++..|...|
T Consensus 361 ~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g 440 (644)
T 1z3i_X 361 NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 440 (644)
T ss_dssp HCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC
Confidence 0001111122222222 246799999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHhcCCce---EEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceE-
Q 036378 447 ISVKSYHSGIPAKDRSRIQELFCSNKIR---VVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC- 522 (815)
Q Consensus 447 ~~v~~~h~~~~~~~R~~i~~~F~~g~~~---VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~- 522 (815)
+.+..+||+++..+|.+++++|++|... +||+|.++++|||++++++||+||+|+++..|.|++||++|.|+...|
T Consensus 441 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~ 520 (644)
T 1z3i_X 441 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 520 (644)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceE
Confidence 9999999999999999999999998764 899999999999999999999999999999999999999999987654
Q ss_pred -EEEeccc
Q 036378 523 -HLFLDDI 529 (815)
Q Consensus 523 -i~l~~~~ 529 (815)
+.|+...
T Consensus 521 v~~lv~~~ 528 (644)
T 1z3i_X 521 IYRLLSTG 528 (644)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 4455554
No 57
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.96 E-value=4.5e-28 Score=252.34 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=156.7
Q ss_pred cccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc--
Q 036378 163 YRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL-- 240 (815)
Q Consensus 163 ~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~-- 240 (815)
...+|+++++++++++.+.+ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++..
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIAR--------------QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHT--------------TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 34688999999999999999 79999999999999999999999999999999999999999853
Q ss_pred ---------CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhh
Q 036378 241 ---------PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306 (815)
Q Consensus 241 ---------~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~ 306 (815)
++++|||+||++|+.|+.+.+.+. +....+.++........ .+.. +++|+|+||++|.+.+.
T Consensus 93 ~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~I~v~Tp~~l~~~l~ 168 (242)
T 3fe2_A 93 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR---DLER-GVEICIATPGRLIDFLE 168 (242)
T ss_dssp TSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH---HHHH-CCSEEEECHHHHHHHHH
T ss_pred hccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHH---HhcC-CCCEEEECHHHHHHHHH
Confidence 678999999999999999888763 34455555555444333 3333 48999999999988765
Q ss_pred hhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 307 ~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
..... +.++++|||||||++.+| +|++.+..+ ++...+..|+++||||++..+...+...+..+
T Consensus 169 ~~~~~-~~~~~~lViDEah~l~~~--~~~~~~~~i----~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~ 232 (242)
T 3fe2_A 169 CGKTN-LRRTTYLVLDEADRMLDM--GFEPQIRKI----VDQIRPDRQTLMWSATWPKEVRQLAEDFLKDY 232 (242)
T ss_dssp HTSCC-CTTCCEEEETTHHHHHHT--TCHHHHHHH----HTTSCSSCEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred cCCCC-cccccEEEEeCHHHHhhh--CcHHHHHHH----HHhCCccceEEEEEeecCHHHHHHHHHHCCCC
Confidence 55444 778999999999999998 588888766 44455678999999999999888887777644
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=3.5e-27 Score=279.19 Aligned_cols=209 Identities=20% Similarity=0.230 Sum_probs=148.8
Q ss_pred cccEEEEeccccc-cccccCchHHHHHHHHHHHHHh------------------cccceeEeeecccChhHHHHHHHHhc
Q 036378 315 LISLVVVDEAHCV-SEWSHNFRPSYMRLRASLLRAR------------------LNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 315 ~i~~lViDEaH~i-~~~g~~fr~~~~~i~~~~~~~~------------------~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
.-.+|||||+|++ .+|++.++..+... ..+.... ....+++++|||++...... ..
T Consensus 325 ~~~llVlDEah~~~~~~~~~~~~~~~~~-~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~----~~ 399 (664)
T 1c4o_A 325 EDFLVFLDESHVTVPQLQGMYRGDYARK-KTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAH----SG 399 (664)
T ss_dssp TTCEEEEETHHHHHHHHHHHHHHHHHHH-HHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHH----CS
T ss_pred hccEEEEecccccHHHHHHHHHHHHHHH-HHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHHHHh----hh
Confidence 4468999999986 45666666654433 2221110 12468899999998754321 00
Q ss_pred CCccceeeccccCCCeeEEEEecCCccchhhhhhHHHHHHHHhh-ccccceEEEecchHHHHHHHHHHhhCCCcEEEecC
Q 036378 376 IPLSNLIQKAQLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRS-SKHYYILQISGKHFETDLISRYLCDNSISVKSYHS 454 (815)
Q Consensus 376 ~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~ 454 (815)
......+.......+. +.+.... ......+. .+... ..+.+++|||+++..++.+++.|.+.|+.+..+||
T Consensus 400 ~~~~~~~r~~~l~~p~-i~v~~~~----~~~~~Ll~---~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~ 471 (664)
T 1c4o_A 400 RVVEQIIRPTGLLDPL-VRVKPTE----NQILDLME---GIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHH 471 (664)
T ss_dssp EEEEECSCTTCCCCCE-EEEECST----THHHHHHH---HHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CeeeeeeccCCCCCCe-EEEeccc----chHHHHHH---HHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecC
Confidence 0000011111111111 1221111 11111222 22222 25679999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCC-----CCCHHHHHHHHcccCCCCCCceEEEEeccc
Q 036378 455 GIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSL-----PESLEEYVQEIGRAGRDGRLSYCHLFLDDI 529 (815)
Q Consensus 455 ~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~-----P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~ 529 (815)
+|++.+|.+++++|++|+++|||||+++++|+|+|+|++||++|. |.+.++|+||+|||||.| .|.|++|+++.
T Consensus 472 ~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~ 550 (664)
T 1c4o_A 472 ELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRV 550 (664)
T ss_dssp TCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSC
T ss_pred CCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCC
Confidence 999999999999999999999999999999999999999999997 999999999999999995 89999999988
Q ss_pred cHHHHHHh
Q 036378 530 TYFRLRSL 537 (815)
Q Consensus 530 d~~~l~~~ 537 (815)
+....+.+
T Consensus 551 ~~~~~~~i 558 (664)
T 1c4o_A 551 SEAMQRAI 558 (664)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 77666554
No 59
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.95 E-value=2.9e-28 Score=251.33 Aligned_cols=189 Identities=19% Similarity=0.230 Sum_probs=150.8
Q ss_pred cccccc-ccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---
Q 036378 164 RRTASE-LELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI--- 239 (815)
Q Consensus 164 ~~~~~~-l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~--- 239 (815)
..+|++ +++.+++++++.+ +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.
T Consensus 18 ~~~f~~~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~ 83 (228)
T 3iuy_A 18 TCRFKDAFQQYPDLLKSIIR--------------VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLD 83 (228)
T ss_dssp CCSHHHHHTTCHHHHHHHHH--------------HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred hhhHhhhhccCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 356777 7999999999998 7999999999999999999999999999999999999999885
Q ss_pred ---------cCCcEEEEcccHHHHHHHHHhcCCC----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhh
Q 036378 240 ---------LPGLTLVVCPLVALMIDQLRHLPPV----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADF 306 (815)
Q Consensus 240 ---------~~~~~lVl~P~~~L~~q~~~~l~~~----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~ 306 (815)
.+.++||++|+++|+.|+.+.+.+. +....+.++.. .......+.. +++|+|+||++|.+...
T Consensus 84 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~iiv~Tp~~l~~~~~ 159 (228)
T 3iuy_A 84 SQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRN---RNGQIEDISK-GVDIIIATPGRLNDLQM 159 (228)
T ss_dssp ---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC---------CHHHHHS-CCSEEEECHHHHHHHHH
T ss_pred hccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCC---hHHHHHHhcC-CCCEEEECHHHHHHHHH
Confidence 4678999999999999999988763 33333333332 2223333444 48999999999988765
Q ss_pred hhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 307 LSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 307 ~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
..... +.++++|||||||++.+| +|++.+..+ +....+..|++++|||++..+.+.+...+..+
T Consensus 160 ~~~~~-~~~~~~lViDEah~~~~~--~~~~~~~~i----~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 160 NNSVN-LRSITYLVIDEADKMLDM--EFEPQIRKI----LLDVRPDRQTVMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp TTCCC-CTTCCEEEECCHHHHHHT--TCHHHHHHH----HHHSCSSCEEEEEESCCCHHHHHHHHTTCSSC
T ss_pred cCCcC-cccceEEEEECHHHHhcc--chHHHHHHH----HHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCC
Confidence 55444 778999999999999998 688888776 44455678999999999999888776666543
No 60
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-27 Score=289.32 Aligned_cols=317 Identities=17% Similarity=0.177 Sum_probs=214.5
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCChhHHHHHHHHHHH------cCCcEEEEcccHHHHHHHHHhcCCCceeee
Q 036378 200 DSFRDGQLEAIKMVL----DKKSTMLVLPTGAGKSLCYQIPAMI------LPGLTLVVCPLVALMIDQLRHLPPVIHGGF 269 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il----~g~d~li~apTGsGKTl~~~lp~l~------~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~ 269 (815)
..++|+|.+++..++ .++++|++.+||+|||+..+..+.. ..+.+|||+| .+|+.||.+++.++.+...
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 379999999998776 7889999999999999987655532 2677999999 7889999999988543322
Q ss_pred eccCCChHHHHHHHHH-----------HhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHH
Q 036378 270 LSSSQRPEEVAETIRL-----------IQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSY 338 (815)
Q Consensus 270 i~~~~~~~~~~~~~~~-----------l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~ 338 (815)
+....+.......+.. ...+.++|+|+|++.+.... ..+. ...+++|||||||++... ...+
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~--~~l~-~~~w~~vIvDEaH~lkn~----~s~~ 386 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR--AELG-SIKWQFMAVDEAHRLKNA----ESSL 386 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH--HHHH-TSEEEEEEETTGGGGCCS----SSHH
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH--HHHh-cCCcceeehhhhhhhcCc----hhHH
Confidence 2222222222222221 23356889999999997542 2222 237899999999999632 1122
Q ss_pred HHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCcc-------------------------------ceeec---
Q 036378 339 MRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPLS-------------------------------NLIQK--- 384 (815)
Q Consensus 339 ~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~~-------------------------------~~~~~--- 384 (815)
... +. .......++|||||......++...+.+-.+ .+++.
T Consensus 387 ~~~----l~-~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~ 461 (800)
T 3mwy_W 387 YES----LN-SFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKK 461 (800)
T ss_dssp HHH----HT-TSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGG
T ss_pred HHH----HH-HhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHH
Confidence 222 22 2345578999999966554444433321100 00000
Q ss_pred ---cccCCCeeEEEEecCCccch---------------------------------------------------------
Q 036378 385 ---AQLRDNLQLSVSLSGNNRQN--------------------------------------------------------- 404 (815)
Q Consensus 385 ---~~~~~~l~~~v~~~~~~~~~--------------------------------------------------------- 404 (815)
..+++.....+.........
T Consensus 462 dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~ 541 (800)
T 3mwy_W 462 DVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGK 541 (800)
T ss_dssp GGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----
T ss_pred hhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccc
Confidence 00111111111111000000
Q ss_pred -----------hhhhhHHHHHHHHhhc--cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcC
Q 036378 405 -----------ERSAYVDEVFSFHRSS--KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSN 471 (815)
Q Consensus 405 -----------~~~~~~~~l~~l~~~~--~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g 471 (815)
....++..+..++..+ .+.+++||+.....++.|+.+|...|+.+..+||+++..+|.+++++|+++
T Consensus 542 ~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~ 621 (800)
T 3mwy_W 542 MTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSP 621 (800)
T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSST
T ss_pred ccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCC
Confidence 0011122233333332 457899999999999999999999999999999999999999999999986
Q ss_pred Cc---eEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceE--EEEeccc
Q 036378 472 KI---RVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC--HLFLDDI 529 (815)
Q Consensus 472 ~~---~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~--i~l~~~~ 529 (815)
.. .+|++|.+++.|||++.+++||+||+|+++..+.|++||++|.|+...+ +.|+...
T Consensus 622 ~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 622 DSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred CCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 54 4999999999999999999999999999999999999999999987544 5556554
No 61
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=1.2e-27 Score=248.45 Aligned_cols=192 Identities=17% Similarity=0.234 Sum_probs=147.6
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|+++++.+++++.+.. +||..|+++|.++|+.+++|+|+++++|||+|||++|++|++..
T Consensus 30 ~~f~~l~l~~~l~~~l~~--------------~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~ 95 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIYA--------------YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 95 (237)
T ss_dssp CSGGGSCCCHHHHHHHHH--------------HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT
T ss_pred CChhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc
Confidence 579999999999999988 79999999999999999999999999999999999999999864
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCCce--eeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcc
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPVIH--GGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLI 316 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~~~--~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i 316 (815)
+.++||++|+++|+.|+++.+.+... ...+....+..........+..+.++|+|+||++|.+.+...... +..+
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~-~~~~ 174 (237)
T 3bor_A 96 FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLS-PKWI 174 (237)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSC-STTC
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcC-cccC
Confidence 56899999999999999999876321 111112223333344455566677999999999998876554444 6789
Q ss_pred cEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 317 SLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 317 ~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
++|||||||++.+| +|...+..+ ++......+++++|||++.++.+.+..++..+
T Consensus 175 ~~lViDEah~~~~~--~~~~~l~~i----~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p 229 (237)
T 3bor_A 175 KMFVLDEADEMLSR--GFKDQIYEI----FQKLNTSIQVVLLSATMPTDVLEVTKKFMRDP 229 (237)
T ss_dssp CEEEEESHHHHHHT--TCHHHHHHH----HHHSCTTCEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred cEEEECCchHhhcc--CcHHHHHHH----HHhCCCCCeEEEEEEecCHHHHHHHHHHCCCC
Confidence 99999999999988 577666554 44555678999999999999888777777644
No 62
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=2.9e-27 Score=288.97 Aligned_cols=327 Identities=13% Similarity=0.105 Sum_probs=210.8
Q ss_pred hhHHHHHHHHHhcCC------CCCCHHHHHHHHHHHc--------------CCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 185 SDENLGRLLRLVYGY------DSFRDGQLEAIKMVLD--------------KKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 185 ~~~~l~~~l~~~~g~------~~~~~~Q~~ai~~il~--------------g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
....+.+++..+.-+ ..|||+|.+||+.++. +++++++++||||||+++ ++++..
T Consensus 249 ~~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~ 327 (1038)
T 2w00_A 249 QKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL 327 (1038)
T ss_dssp SHHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC
T ss_pred chHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc
Confidence 345566666665322 3599999999999876 368999999999999997 444321
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhh-hhhcCccc
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI-FTATSLIS 317 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~-~~~~~~i~ 317 (815)
..++|||+|+++|+.|+.+.+..+... .+....+..... ..+..+..+|+|+||++|........ ...+....
T Consensus 328 ~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~-~v~~~~s~~~l~---~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~ 403 (1038)
T 2w00_A 328 DFIDKVFFVVDRKDLDYQTMKEYQRFSPD-SVNGSENTAGLK---RNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQV 403 (1038)
T ss_dssp TTCCEEEEEECGGGCCHHHHHHHHTTSTT-CSSSSCCCHHHH---HHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHHHhccc-ccccccCHHHHH---HHhcCCCCCEEEEEHHHHHHHHhcccchhcccccc
Confidence 258999999999999999998875433 222233333332 33444568999999999987533211 11245778
Q ss_pred EEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHH----HHHHHHhcCCccce-----eeccccC
Q 036378 318 LVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTL----RDVMSALEIPLSNL-----IQKAQLR 388 (815)
Q Consensus 318 ~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~----~~i~~~l~~~~~~~-----~~~~~~~ 388 (815)
+|||||||++.. | ..+..+ ....+..++++|||||....- ......++...... +......
T Consensus 404 lvIiDEAHrs~~-~----~~~~~I-----~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~ 473 (1038)
T 2w00_A 404 VFIFDECHRSQF-G----EAQKNL-----KKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVL 473 (1038)
T ss_dssp EEEEESCCTTHH-H----HHHHHH-----HHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSC
T ss_pred EEEEEccchhcc-h----HHHHHH-----HHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcC
Confidence 999999999752 1 122222 334566799999999985421 12223333211100 0111111
Q ss_pred CCeeEEEEec---------C-Cccch---------hhhhhHHHH-HHHHh----h-------ccccceEEEecchHHHHH
Q 036378 389 DNLQLSVSLS---------G-NNRQN---------ERSAYVDEV-FSFHR----S-------SKHYYILQISGKHFETDL 437 (815)
Q Consensus 389 ~~l~~~v~~~---------~-~~~~~---------~~~~~~~~l-~~l~~----~-------~~~~~~ivf~~s~~~~e~ 437 (815)
+ +.+..... . +.... .....+..+ ..++. . ..+.++++||+++..|..
T Consensus 474 p-~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~ 552 (1038)
T 2w00_A 474 K-FKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKA 552 (1038)
T ss_dssp C-EEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHH
T ss_pred C-eEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHH
Confidence 1 11111100 0 00000 000011111 11111 1 133578999999999999
Q ss_pred HHHHHhhCC------------CcE-EEecCC----------C----------CH--------------------------
Q 036378 438 ISRYLCDNS------------ISV-KSYHSG----------I----------PA-------------------------- 458 (815)
Q Consensus 438 l~~~L~~~g------------~~v-~~~h~~----------~----------~~-------------------------- 458 (815)
+++.|.+.+ +.+ .++|++ + +.
T Consensus 553 ~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~ 632 (1038)
T 2w00_A 553 YYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSN 632 (1038)
T ss_dssp HHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHH
T ss_pred HHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccch
Confidence 999998754 455 556653 2 22
Q ss_pred ---HHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCC----ceEEEEecc
Q 036378 459 ---KDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRL----SYCHLFLDD 528 (815)
Q Consensus 459 ---~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~----g~~i~l~~~ 528 (815)
.+|..++++|++|+++|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|.+.
T Consensus 633 ~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 633 GFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 147889999999999999999999999999999 788999999999999999999998753 667766653
No 63
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=252.06 Aligned_cols=188 Identities=18% Similarity=0.276 Sum_probs=147.6
Q ss_pred ccccccc--ccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---
Q 036378 165 RTASELE--LVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI--- 239 (815)
Q Consensus 165 ~~~~~l~--l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~--- 239 (815)
.+|++++ +.+++++.+.+ +||..|+|+|.++++.++.|+|+++++|||||||++|++|++.
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~ 117 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKE--------------MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIV 117 (262)
T ss_dssp GCC-----CCCHHHHHHHHH--------------TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CChhHhccccCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHH
Confidence 3566666 88999999988 7999999999999999999999999999999999999999984
Q ss_pred -------cCCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhh
Q 036378 240 -------LPGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFL 307 (815)
Q Consensus 240 -------~~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~ 307 (815)
.+.++|||+||++|+.|+++.+.+. .....+.++.... .....+..+ ++|+|+||++|......
T Consensus 118 ~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~-~~Iiv~Tp~~l~~~~~~ 193 (262)
T 3ly5_A 118 KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRS---AEAQKLGNG-INIIVATPGRLLDHMQN 193 (262)
T ss_dssp HTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHH---HHHHHHHHC-CSEEEECHHHHHHHHHH
T ss_pred hccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHH---HHHHHhcCC-CCEEEEcHHHHHHHHHc
Confidence 3778999999999999999998873 2233344443333 333344445 89999999999886655
Q ss_pred hhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcC
Q 036378 308 SIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEI 376 (815)
Q Consensus 308 ~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~ 376 (815)
.....+.++++|||||||++.+| +|++.+..+ ++......|+++||||++.++...+...+..
T Consensus 194 ~~~~~~~~l~~lViDEah~l~~~--~~~~~l~~i----~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~ 256 (262)
T 3ly5_A 194 TPGFMYKNLQCLVIDEADRILDV--GFEEELKQI----IKLLPTRRQTMLFSATQTRKVEDLARISLKK 256 (262)
T ss_dssp CTTCCCTTCCEEEECSHHHHHHT--TCHHHHHHH----HHHSCSSSEEEEECSSCCHHHHHHHHHHCSS
T ss_pred cCCcccccCCEEEEcChHHHhhh--hHHHHHHHH----HHhCCCCCeEEEEEecCCHHHHHHHHHHcCC
Confidence 43223678999999999999998 688887666 4445567899999999999988777666543
No 64
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=2.5e-27 Score=240.16 Aligned_cols=188 Identities=19% Similarity=0.217 Sum_probs=150.3
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|+++++++++++.+.+ +||..|+|+|.++++.+++|+++++.+|||+|||++|++|++..
T Consensus 3 ~~f~~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~ 68 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE--------------MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK 68 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT--------------TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT
T ss_pred CChhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc
Confidence 468999999999999999 79999999999999999999999999999999999999999864
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCC------ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhh
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPV------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~------~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~ 312 (815)
+.++||++|+++|+.|+++.+.+. +....+.++....+ ....+. +.++|+|+||++|.+........
T Consensus 69 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~-~~~~i~v~T~~~l~~~~~~~~~~- 143 (206)
T 1vec_A 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD---DIMRLD-DTVHVVIATPGRILDLIKKGVAK- 143 (206)
T ss_dssp SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHH---HHHHTT-SCCSEEEECHHHHHHHHHTTCSC-
T ss_pred CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHH---HHHhcC-CCCCEEEeCHHHHHHHHHcCCcC-
Confidence 457999999999999999888652 23333444443322 223333 45899999999998766554443
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
+.++++|||||||++.++ +|+..+..+ +.......+++++|||++..+.+.+...+..+
T Consensus 144 ~~~~~~lViDEah~~~~~--~~~~~l~~i----~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p 202 (206)
T 1vec_A 144 VDHVQMIVLDEADKLLSQ--DFVQIMEDI----ILTLPKNRQILLYSATFPLSVQKFMNSHLEKP 202 (206)
T ss_dssp CTTCCEEEEETHHHHTST--TTHHHHHHH----HHHSCTTCEEEEEESCCCHHHHHHHHHHCSSC
T ss_pred cccCCEEEEEChHHhHhh--CcHHHHHHH----HHhCCccceEEEEEeeCCHHHHHHHHHHcCCC
Confidence 678999999999999876 677666555 44445578999999999999888777777544
No 65
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.95 E-value=1.3e-27 Score=245.01 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=148.4
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|+++++++++++.+.+ +||..|+|+|.++++.+++|+++++++|||+|||++|++|++..
T Consensus 4 ~~f~~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~ 69 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKT--------------LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE 69 (219)
T ss_dssp CCGGGSCCCHHHHHHHHH--------------TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT
T ss_pred CCHhhCCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC
Confidence 468899999999999988 79999999999999999999999999999999999999999864
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCCc---------eeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhh
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPVI---------HGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI 309 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~~---------~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~ 309 (815)
+.++||++|+++|+.|+++.+.+.. ....+.++. ......+.+. ++++|+|+||++|.+......
T Consensus 70 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~ 145 (219)
T 1q0u_A 70 RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGT---DKQKALEKLN-VQPHIVIGTPGRINDFIREQA 145 (219)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCS---HHHHTTCCCS-SCCSEEEECHHHHHHHHHTTC
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCC---CHHHHHHHcC-CCCCEEEeCHHHHHHHHHcCC
Confidence 5689999999999999999876532 222233322 2222222222 358999999999987655444
Q ss_pred hhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCc
Q 036378 310 FTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPL 378 (815)
Q Consensus 310 ~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~ 378 (815)
.. +.++++|||||||++.+| +|...+..+ +.......+++++|||++.++.+.+...+..+.
T Consensus 146 ~~-~~~~~~lViDEah~~~~~--~~~~~l~~i----~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~ 207 (219)
T 1q0u_A 146 LD-VHTAHILVVDEADLMLDM--GFITDVDQI----AARMPKDLQMLVFSATIPEKLKPFLKKYMENPT 207 (219)
T ss_dssp CC-GGGCCEEEECSHHHHHHT--TCHHHHHHH----HHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCE
T ss_pred CC-cCcceEEEEcCchHHhhh--ChHHHHHHH----HHhCCcccEEEEEecCCCHHHHHHHHHHcCCCe
Confidence 33 678999999999999988 566555444 444555779999999999998887777776553
No 66
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=243.03 Aligned_cols=190 Identities=17% Similarity=0.235 Sum_probs=152.7
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
..+|+++++.+.+++.+.. +||..|+++|.++|+.+++|+++++.+|||+|||++|++|++..
T Consensus 42 ~~~f~~l~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQ--------------LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHH--------------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 3578999999999999988 89999999999999999999999999999999999999999753
Q ss_pred ---CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhh
Q 036378 241 ---PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312 (815)
Q Consensus 241 ---~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~ 312 (815)
+.++||++|+++|+.|+++.+.+. +....+.++...... ...+. ++++|+|+||++|.+.+.......
T Consensus 108 ~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~~~I~v~Tp~~l~~~l~~~~~~~ 183 (249)
T 3ber_A 108 TPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQ---SLALA-KKPHIIIATPGRLIDHLENTKGFN 183 (249)
T ss_dssp SCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHH---HHHHH-TCCSEEEECHHHHHHHHHHSTTCC
T ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHH---HHHhc-CCCCEEEECHHHHHHHHHcCCCcC
Confidence 467999999999999999888763 334445554443332 22233 358999999999987655422222
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
+.++++|||||||++.+| +|++.+..+ +.......++++||||++..+.+.+...+..+
T Consensus 184 l~~~~~lViDEah~l~~~--~~~~~l~~i----~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p 242 (249)
T 3ber_A 184 LRALKYLVMDEADRILNM--DFETEVDKI----LKVIPRDRKTFLFSATMTKKVQKLQRAALKNP 242 (249)
T ss_dssp CTTCCEEEECSHHHHHHT--TCHHHHHHH----HHSSCSSSEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred ccccCEEEEcChhhhhcc--ChHHHHHHH----HHhCCCCCeEEEEeccCCHHHHHHHHHHCCCC
Confidence 678999999999999988 788887666 44445578999999999999888777766544
No 67
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.94 E-value=9.6e-27 Score=240.37 Aligned_cols=187 Identities=16% Similarity=0.170 Sum_probs=148.5
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
..+|+++++++++++.+.+ +||..|+++|.++|+.+++|+|+++++|||+|||++|++|++..
T Consensus 23 ~~~f~~l~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 88 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRA--------------AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL 88 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHH--------------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT
T ss_pred CCCHhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3579999999999999988 79999999999999999999999999999999999999999754
Q ss_pred ---CCcEEEEcccHHHHHHHHHhcCCC------ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhh
Q 036378 241 ---PGLTLVVCPLVALMIDQLRHLPPV------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFT 311 (815)
Q Consensus 241 ---~~~~lVl~P~~~L~~q~~~~l~~~------~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~ 311 (815)
+.++||++|+++|+.|+++.+.+. ++...+.++....+.... + .+++|+|+||++|.+........
T Consensus 89 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~Iiv~Tp~~l~~~~~~~~~~ 163 (230)
T 2oxc_A 89 ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR---L--KKCHIAVGSPGRIKQLIELDYLN 163 (230)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH---T--TSCSEEEECHHHHHHHHHTTSSC
T ss_pred cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh---c--cCCCEEEECHHHHHHHHhcCCcc
Confidence 468999999999999999988763 333444444444333222 2 25899999999998866544443
Q ss_pred hcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhc
Q 036378 312 ATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 312 ~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
+.++++|||||||++.+|| .|++.+..+ ++......+++++|||++.++.+.+..++.
T Consensus 164 -~~~~~~lViDEah~~~~~~-~~~~~~~~i----~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~ 221 (230)
T 2oxc_A 164 -PGSIRLFILDEADKLLEEG-SFQEQINWI----YSSLPASKQMLAVSATYPEFLANALTKYMR 221 (230)
T ss_dssp -GGGCCEEEESSHHHHHSTT-SSHHHHHHH----HHHSCSSCEEEEEESCCCHHHHHHHTTTCS
T ss_pred -cccCCEEEeCCchHhhcCc-chHHHHHHH----HHhCCCCCeEEEEEeccCHHHHHHHHHHcC
Confidence 6789999999999999885 377776655 444455779999999999887665555444
No 68
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.94 E-value=5e-27 Score=244.80 Aligned_cols=196 Identities=18% Similarity=0.199 Sum_probs=148.0
Q ss_pred cccccc----cccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH-
Q 036378 165 RTASEL----ELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI- 239 (815)
Q Consensus 165 ~~~~~l----~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~- 239 (815)
.+|+++ ++.+++++.+.+ +||..|+|+|.++|+.+++|+++++.+|||+|||++|++|++.
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~ 90 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILD--------------AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQ 90 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHH--------------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCHHHhhhccCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 455555 799999999988 7999999999999999999999999999999999999999985
Q ss_pred ------cCCcEEEEcccHHHHHHHHHhcCCCceeee--eccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhh-h
Q 036378 240 ------LPGLTLVVCPLVALMIDQLRHLPPVIHGGF--LSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSI-F 310 (815)
Q Consensus 240 ------~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~--i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~-~ 310 (815)
.+.++|||+|+++|+.|+++.+.+...... +....+.............++++|+|+||++|.+.+.... .
T Consensus 91 l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~ 170 (245)
T 3dkp_A 91 LKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPG 170 (245)
T ss_dssp HCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCS
T ss_pred HhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCC
Confidence 255799999999999999999987432211 1111222222222222334568999999999988665442 1
Q ss_pred hhcCcccEEEEeccccccccc-cCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 311 TATSLISLVVVDEAHCVSEWS-HNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 311 ~~~~~i~~lViDEaH~i~~~g-~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
..+.++++|||||||++.+|+ .+|+..+..++. .......++++||||++.++.+.+...+..+
T Consensus 171 ~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p 235 (245)
T 3dkp_A 171 IDLASVEWLVVDESDKLFEDGKTGFRDQLASIFL---ACTSHKVRRAMFSATFAYDVEQWCKLNLDNV 235 (245)
T ss_dssp CCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHH---HCCCTTCEEEEEESSCCHHHHHHHHHHSSSC
T ss_pred cccccCcEEEEeChHHhcccccccHHHHHHHHHH---hcCCCCcEEEEEeccCCHHHHHHHHHhCCCC
Confidence 226789999999999999987 468777776622 2223467899999999998887776666544
No 69
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.94 E-value=7.2e-27 Score=236.82 Aligned_cols=187 Identities=20% Similarity=0.211 Sum_probs=150.2
Q ss_pred ccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc-----
Q 036378 166 TASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----- 240 (815)
Q Consensus 166 ~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~----- 240 (815)
+|+++++++++++.+.+ +||..|+|+|.++++.+++|+++++.+|||+|||++|++|++..
T Consensus 2 ~f~~~~l~~~l~~~l~~--------------~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~ 67 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG--------------RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ 67 (207)
T ss_dssp CGGGSCCCHHHHHHHHH--------------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC
T ss_pred ChhhcCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc
Confidence 58889999999999988 79999999999999999999999999999999999999998753
Q ss_pred ----CCcEEEEcccHHHHHHHHHhcCCC---ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhc
Q 036378 241 ----PGLTLVVCPLVALMIDQLRHLPPV---IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313 (815)
Q Consensus 241 ----~~~~lVl~P~~~L~~q~~~~l~~~---~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~ 313 (815)
+.++||++|+++|+.|+++.+.+. +....+.++........ .+.. +++|+|+||+++.+........ +
T Consensus 68 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~i~v~T~~~l~~~~~~~~~~-~ 142 (207)
T 2gxq_A 68 ERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKE---ALLR-GADAVVATPGRALDYLRQGVLD-L 142 (207)
T ss_dssp CTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHH---HHHH-CCSEEEECHHHHHHHHHHTSSC-C
T ss_pred ccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHH---HhhC-CCCEEEECHHHHHHHHHcCCcc-h
Confidence 567999999999999999998874 33444555544433322 2223 4899999999998876554444 6
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
.++++|||||||++.++ +|...+..+ +.......+++++|||++..+.+.+...+..+
T Consensus 143 ~~~~~iViDEah~~~~~--~~~~~~~~i----~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p 200 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSM--GFEEEVEAL----LSATPPSRQTLLFSATLPSWAKRLAERYMKNP 200 (207)
T ss_dssp TTCSEEEEESHHHHHHT--TCHHHHHHH----HHTSCTTSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred hhceEEEEEChhHhhcc--chHHHHHHH----HHhCCccCeEEEEEEecCHHHHHHHHHHcCCC
Confidence 78999999999999887 677666555 44555677999999999988777666666543
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=4.5e-27 Score=240.94 Aligned_cols=189 Identities=14% Similarity=0.182 Sum_probs=150.0
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|+++++++++++.+.+ +||..|+|+|.++++.+++|+++++++|||+|||++|++|++..
T Consensus 14 ~~f~~~~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~ 79 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVD--------------CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV 79 (220)
T ss_dssp CCSTTSCCCHHHHHHHHH--------------TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC
T ss_pred CCHhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc
Confidence 468999999999999998 79999999999999999999999999999999999999999865
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCC------ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhh
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPV------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTA 312 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~------~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~ 312 (815)
..++||++|+++|+.|+++.+.+. +....+.++..... ..+.+..+.++|+|+||++|..........
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~---~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~- 155 (220)
T 1t6n_A 80 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK---DEEVLKKNCPHIVVGTPGRILALARNKSLN- 155 (220)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHH---HHHHHHHSCCSEEEECHHHHHHHHHTTSSC-
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHH---HHHHHhcCCCCEEEeCHHHHHHHHHhCCCC-
Confidence 348999999999999999887652 33444555544433 334455566899999999998765554443
Q ss_pred cCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcC
Q 036378 313 TSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEI 376 (815)
Q Consensus 313 ~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~ 376 (815)
+.++++|||||||++.+| ++|+..+..+ ++......+++++|||++.++.+.+..++..
T Consensus 156 ~~~~~~lViDEah~~~~~-~~~~~~~~~i----~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~ 214 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQ-LDMRRDVQEI----FRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 214 (220)
T ss_dssp CTTCCEEEEESHHHHHSS-HHHHHHHHHH----HHTSCSSSEEEEEESCCCTTTHHHHHTTCSS
T ss_pred cccCCEEEEcCHHHHhcc-cCcHHHHHHH----HHhCCCcCeEEEEEeecCHHHHHHHHHHcCC
Confidence 678999999999999864 2455544443 5555567899999999999887766555543
No 71
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=239.29 Aligned_cols=188 Identities=19% Similarity=0.269 Sum_probs=147.2
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--- 240 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--- 240 (815)
..+|+++++++.+++.+.+ +||..|+|+|.++++.+++|+++++++|||+|||++|++|++..
T Consensus 24 ~~~f~~~~l~~~l~~~l~~--------------~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQE--------------AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHH--------------TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 3578999999999999998 79999999999999999999999999999999999999998743
Q ss_pred -------CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhh
Q 036378 241 -------PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308 (815)
Q Consensus 241 -------~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~ 308 (815)
+.++||++|+++|+.|+++.+.+. +....+.++....... ..+ ++++|+|+||++|.+.....
T Consensus 90 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~--~~~~iiv~Tp~~l~~~l~~~ 164 (236)
T 2pl3_A 90 LQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA---ERI--NNINILVCTPGRLLQHMDET 164 (236)
T ss_dssp TTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHH---HHH--TTCSEEEECHHHHHHHHHHC
T ss_pred hcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHH---HhC--CCCCEEEECHHHHHHHHHhc
Confidence 678999999999999999998763 3334444443332222 222 35899999999998765443
Q ss_pred hhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcC
Q 036378 309 IFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEI 376 (815)
Q Consensus 309 ~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~ 376 (815)
....+.++++|||||||++.+| +|...+..+ +.......++++||||++..+...+...+..
T Consensus 165 ~~~~~~~~~~lViDEah~~~~~--~~~~~~~~i----~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~ 226 (236)
T 2pl3_A 165 VSFHATDLQMLVLDEADRILDM--GFADTMNAV----IENLPKKRQTLLFSATQTKSVKDLARLSLKN 226 (236)
T ss_dssp SSCCCTTCCEEEETTHHHHHHT--TTHHHHHHH----HHTSCTTSEEEEEESSCCHHHHHHHHHSCSS
T ss_pred CCcccccccEEEEeChHHHhcC--CcHHHHHHH----HHhCCCCCeEEEEEeeCCHHHHHHHHHhCCC
Confidence 2222668999999999999988 566666555 4455567789999999999887655554443
No 72
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=4.3e-25 Score=261.13 Aligned_cols=116 Identities=24% Similarity=0.245 Sum_probs=109.7
Q ss_pred cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCccEEEEeCC-
Q 036378 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSL- 499 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~- 499 (815)
.+.+++|||+++..++.+++.|.+.|+.+..+||+|++.+|.+++++|++|+++|||||+++++|+|+|+|++||++|.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 500 ----PESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 500 ----P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
|.+.++|+||+|||||. ..|.|++|+++.+....+.+
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 99999999999999998 78999999999877665544
No 73
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.94 E-value=1.3e-26 Score=238.25 Aligned_cols=187 Identities=18% Similarity=0.239 Sum_probs=146.8
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|+++++++.+++.+.. +||..|+|+|.++++.+++|+++++.+|||+|||++|++|++..
T Consensus 14 ~~f~~l~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~ 79 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFG--------------YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS 79 (224)
T ss_dssp CCGGGGTCCHHHHHHHHH--------------HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT
T ss_pred CChhhcCCCHHHHHHHHH--------------CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc
Confidence 578999999999999988 79999999999999999999999999999999999999999853
Q ss_pred --CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhc
Q 036378 241 --PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTAT 313 (815)
Q Consensus 241 --~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~ 313 (815)
+.++||++|+++|+.|+++.+.+. +....+.++....+ ....+. +++|+|+||++|.+........ +
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~--~~~iiv~Tp~~l~~~~~~~~~~-~ 153 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE---DAEGLR--DAQIVVGTPGRVFDNIQRRRFR-T 153 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSC-C
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHH---HHhcCC--CCCEEEECHHHHHHHHHhCCcc-h
Confidence 568999999999999999988762 23333333332222 222222 3899999999998766554443 6
Q ss_pred CcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 314 SLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 314 ~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
.++++|||||||++.+| +|+..+..+ +....+..+++++|||++.++.+.+..++..+
T Consensus 154 ~~~~~iViDEah~~~~~--~~~~~l~~i----~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p 211 (224)
T 1qde_A 154 DKIKMFILDEADEMLSS--GFKEQIYQI----FTLLPPTTQVVLLSATMPNDVLEVTTKFMRNP 211 (224)
T ss_dssp TTCCEEEEETHHHHHHT--TCHHHHHHH----HHHSCTTCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred hhCcEEEEcChhHHhhh--hhHHHHHHH----HHhCCccCeEEEEEeecCHHHHHHHHHHCCCC
Confidence 78999999999999988 577666555 44455677999999999999888777777654
No 74
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=248.05 Aligned_cols=189 Identities=16% Similarity=0.185 Sum_probs=148.0
Q ss_pred cccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCChhHHHHHHHHHHHc
Q 036378 163 YRRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDK--KSTMLVLPTGAGKSLCYQIPAMIL 240 (815)
Q Consensus 163 ~~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g--~d~li~apTGsGKTl~~~lp~l~~ 240 (815)
...+|+++++++.+++.+.. +||..|+++|.++|+.++.| +|+++++|||||||++|++|++..
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~--------------~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYA--------------MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHH--------------TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcCCHhhcCCCHHHHHHHHH--------------cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 34689999999999999998 79999999999999999997 999999999999999999999854
Q ss_pred ------CCcEEEEcccHHHHHHHHHhcCCC------ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhh
Q 036378 241 ------PGLTLVVCPLVALMIDQLRHLPPV------IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLS 308 (815)
Q Consensus 241 ------~~~~lVl~P~~~L~~q~~~~l~~~------~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~ 308 (815)
++++|||+||++|+.|+++.+... +......++..... -....++|+|+||++|.+.+...
T Consensus 156 l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 156 VEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp CCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTT
T ss_pred hhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh-------hhcCCCCEEEECHHHHHHHHHhc
Confidence 447999999999999988777652 22222222222111 01345799999999998876543
Q ss_pred hhhhcCcccEEEEeccccccc-cccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCCc
Q 036378 309 IFTATSLISLVVVDEAHCVSE-WSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIPL 378 (815)
Q Consensus 309 ~~~~~~~i~~lViDEaH~i~~-~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~~ 378 (815)
....+.++++|||||||++++ + +|...+..+ ++......|+++||||++..+...+...+..+.
T Consensus 229 ~~~~l~~l~~lVlDEad~l~~~~--~~~~~~~~i----~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~ 293 (300)
T 3fmo_B 229 KFIDPKKIKVFVLDEADVMIATQ--GHQDQSIRI----QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN 293 (300)
T ss_dssp CCCCGGGCSEEEETTHHHHHHST--THHHHHHHH----HTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCE
T ss_pred CCCChhhceEEEEeCHHHHhhcc--CcHHHHHHH----HHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCe
Confidence 322367899999999999987 4 566665554 445556789999999999999887777776543
No 75
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.94 E-value=5.1e-27 Score=246.01 Aligned_cols=190 Identities=19% Similarity=0.206 Sum_probs=150.0
Q ss_pred cccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----
Q 036378 165 RTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---- 240 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---- 240 (815)
.+|+++++++++++++.. +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++..
T Consensus 23 ~~f~~l~l~~~l~~~l~~--------------~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~ 88 (253)
T 1wrb_A 23 ENFDELKLDPTIRNNILL--------------ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 88 (253)
T ss_dssp CSSGGGSCCCSTTTTTTT--------------TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCHhhCCCCHHHHHHHHH--------------CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhh
Confidence 568899999999999988 79999999999999999999999999999999999999999743
Q ss_pred -----------CCcEEEEcccHHHHHHHHHhcCCC-----ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhch
Q 036378 241 -----------PGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNA 304 (815)
Q Consensus 241 -----------~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~ 304 (815)
++++|||+|+++|+.|+++.+.+. +....+.++..... ....+. ..++|+|+||++|.+.
T Consensus 89 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~-~~~~Ivv~Tp~~l~~~ 164 (253)
T 1wrb_A 89 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHS---QIREVQ-MGCHLLVATPGRLVDF 164 (253)
T ss_dssp CC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHH---HHHHHS-SCCSEEEECHHHHHHH
T ss_pred ccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH---HHHHhC-CCCCEEEECHHHHHHH
Confidence 258999999999999999988763 33344444443332 223333 3589999999999887
Q ss_pred hhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcc--cceeEeeecccChhHHHHHHHHhcCC
Q 036378 305 DFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLN--VECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 305 ~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~--~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
....... +.++++|||||||++.+| +|++.+..+...+ .... ..|+++||||++.++...+...+..+
T Consensus 165 l~~~~~~-~~~~~~lViDEah~~~~~--~~~~~~~~i~~~~--~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~ 234 (253)
T 1wrb_A 165 IEKNKIS-LEFCKYIVLDEADRMLDM--GFEPQIRKIIEES--NMPSGINRQTLMFSATFPKEIQKLAADFLYNY 234 (253)
T ss_dssp HHTTSBC-CTTCCEEEEETHHHHHHT--TCHHHHHHHHHSS--CCCCGGGCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred HHcCCCC-hhhCCEEEEeCHHHHHhC--chHHHHHHHHhhc--cCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCC
Confidence 6554444 678999999999999988 6888887763211 1222 56899999999999877777666543
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.91 E-value=8.8e-24 Score=205.96 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=128.7
Q ss_pred ccCCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 036378 386 QLRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQ 465 (815)
Q Consensus 386 ~~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~ 465 (815)
...+++...+....... ++..+..++......+++|||+++..++.+++.|...|+.+..+||+|++.+|..++
T Consensus 5 ~~~~~i~~~~~~~~~~~------K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~ 78 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREEN------KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVM 78 (163)
T ss_dssp -CCCCEEEEEEECCGGG------HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred cCcccceEEEEECChHH------HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 34566666666554332 234444555556778999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 466 ELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 466 ~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
++|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.|...++.+.
T Consensus 79 ~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~ 151 (163)
T 2hjv_A 79 NEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIE 151 (163)
T ss_dssp HHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHH
T ss_pred HHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888777654
No 77
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=2.9e-22 Score=232.88 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=102.9
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCC---
Q 036378 190 GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPP--- 263 (815)
Q Consensus 190 ~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~--- 263 (815)
.+.-++.+|+ .|+++|..+++.++.|+ |+.|.||+|||++|.+|++. .+..++||+||++||.|..+.+..
T Consensus 69 REAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 69 RESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp HHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 4566778999 99999999999999998 99999999999999999963 367899999999999998888776
Q ss_pred --CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhh-hchhhhhh-----hhhcC---cccEEEEecccccc
Q 036378 264 --VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF-LNADFLSI-----FTATS---LISLVVVDEAHCVS 328 (815)
Q Consensus 264 --~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L-~~~~~~~~-----~~~~~---~i~~lViDEaH~i~ 328 (815)
++....+.+++...+... .. .++|+|+||++| ++.+..+. ...+. ++.++||||||.|+
T Consensus 146 ~lGLsv~~i~Gg~~~~~r~~-----ay-~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 146 GLGLSVGVIQHASTPAERRK-----AY-LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTTCCEEECCTTCCHHHHHH-----HH-TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred hcCCeEEEEeCCCCHHHHHH-----Hc-CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 355566666666433222 22 489999999999 55443332 11256 89999999999986
No 78
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=5.1e-23 Score=203.00 Aligned_cols=144 Identities=17% Similarity=0.278 Sum_probs=121.7
Q ss_pred CCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHH
Q 036378 389 DNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELF 468 (815)
Q Consensus 389 ~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F 468 (815)
.++...+....... .++..+..++......+++|||+++..++.+++.|...|+.+..+||+|++.+|..++++|
T Consensus 6 ~~i~q~~~~~~~~~-----~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 6 NNIRQYYVLCEHRK-----DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CCEEEEEEECSSHH-----HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHH
T ss_pred CCceEEEEEcCChH-----hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 45555555444322 1334455666666778999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEccccccccccCCccEEEEeCCC------CCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 469 CSNKIRVVVATVAFGMGLDKRDVGAVIHYSLP------ESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 469 ~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P------~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
++|+.+|||||+++++|||+|++++||+||+| .+.++|+||+||+||.|+.|.|++|+++.+...++.+
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i 155 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKI 155 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHH
T ss_pred HcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999999999999999987766654
No 79
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.90 E-value=2.9e-23 Score=211.32 Aligned_cols=128 Identities=25% Similarity=0.355 Sum_probs=117.6
Q ss_pred HHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccC
Q 036378 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489 (815)
Q Consensus 410 ~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p 489 (815)
+..+..++......+++|||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 19 ~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~ 98 (212)
T 3eaq_A 19 LEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIP 98 (212)
T ss_dssp HHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCC
T ss_pred HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCc
Confidence 44555666666788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHh
Q 036378 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSL 537 (815)
Q Consensus 490 ~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~ 537 (815)
++++||+||+|.+.++|+||+||+||.|++|.|++|+++.|...++.+
T Consensus 99 ~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i 146 (212)
T 3eaq_A 99 QVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEAL 146 (212)
T ss_dssp CBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHH
T ss_pred cCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHH
Confidence 999999999999999999999999999999999999999987776654
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=5.3e-23 Score=202.27 Aligned_cols=128 Identities=22% Similarity=0.369 Sum_probs=116.4
Q ss_pred HHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccC
Q 036378 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489 (815)
Q Consensus 410 ~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p 489 (815)
...+..++......+++|||+++..++.+++.|...|+.+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|
T Consensus 19 ~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~ 98 (172)
T 1t5i_A 19 NRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIE 98 (172)
T ss_dssp HHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGG
T ss_pred HHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchh
Confidence 34455666666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccc-cHHHHHHh
Q 036378 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI-TYFRLRSL 537 (815)
Q Consensus 490 ~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~-d~~~l~~~ 537 (815)
++++||+||+|.+.++|+||+||+||.|+.|.|++|+++. +...++.+
T Consensus 99 ~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l 147 (172)
T 1t5i_A 99 RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV 147 (172)
T ss_dssp GCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHH
T ss_pred hCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHH
Confidence 9999999999999999999999999999999999999875 44444433
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.89 E-value=7.6e-23 Score=203.54 Aligned_cols=146 Identities=25% Similarity=0.399 Sum_probs=112.4
Q ss_pred cCCCeeEEEEecCCccchhhhhhHHHHHHHHhhc-cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 036378 387 LRDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSS-KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQ 465 (815)
Q Consensus 387 ~~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~ 465 (815)
...++...+.......+ +..+..++... ...+++|||+++..++.+++.|...|+.+..+||+|++.+|.+++
T Consensus 16 ~~~~i~q~~~~v~~~~K------~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~ 89 (185)
T 2jgn_A 16 TSENITQKVVWVEESDK------RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 89 (185)
T ss_dssp CCTTEEEEEEECCGGGH------HHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHH
T ss_pred CCCCceEEEEEeCcHHH------HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHH
Confidence 45667766666554322 23334444444 567899999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 466 ELFCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 466 ~~F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
++|++|+.+|||||+++++|+|+|++++||+||+|++.++|+||+||+||.|+.|.|++|+++.|...++.+.
T Consensus 90 ~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~ 162 (185)
T 2jgn_A 90 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLL 162 (185)
T ss_dssp HHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHH
T ss_pred HHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876665543
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.89 E-value=5.8e-23 Score=200.61 Aligned_cols=129 Identities=24% Similarity=0.378 Sum_probs=114.4
Q ss_pred HHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccC
Q 036378 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489 (815)
Q Consensus 410 ~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p 489 (815)
...+..++......+++|||++++.++.+++.|...|+.+..+||+|++.+|.++++.|++|+.+|||||+++++|+|+|
T Consensus 18 ~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~ 97 (165)
T 1fuk_A 18 YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 97 (165)
T ss_dssp HHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCC
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcc
Confidence 34445666666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 490 ~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
++++||+||+|.+.++|+||+||+||.|+.|.|++|+++.|...++.+.
T Consensus 98 ~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~ 146 (165)
T 1fuk_A 98 QVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 146 (165)
T ss_dssp SCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877766553
No 83
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=199.86 Aligned_cols=142 Identities=25% Similarity=0.353 Sum_probs=116.4
Q ss_pred CCCeeEEEEecCCccchhhhhhHHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHH
Q 036378 388 RDNLQLSVSLSGNNRQNERSAYVDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQEL 467 (815)
Q Consensus 388 ~~~l~~~v~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~ 467 (815)
..++...+....... ++..+..++... ..+++|||+++..++.+++.|...|+.+..+||+|++.+|.+++++
T Consensus 27 ~~~i~q~~~~~~~~~------K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~ 99 (191)
T 2p6n_A 27 SLDVIQEVEYVKEEA------KMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEA 99 (191)
T ss_dssp -CCSEEEEEECCGGG------HHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHH
T ss_pred CcCceEEEEEcChHH------HHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHH
Confidence 345555555444322 233334444433 4589999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEEccccccccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccc-cHHHHHH
Q 036378 468 FCSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDI-TYFRLRS 536 (815)
Q Consensus 468 F~~g~~~VLVaT~~~~~GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~-d~~~l~~ 536 (815)
|++|+.+|||||+++++|||+|++++||+||+|.+.++|+||+||+||.|+.|.|++|+++. +...++.
T Consensus 100 F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~ 169 (191)
T 2p6n_A 100 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMD 169 (191)
T ss_dssp HHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHH
T ss_pred HhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875 5444443
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=3.3e-22 Score=213.33 Aligned_cols=129 Identities=24% Similarity=0.345 Sum_probs=115.0
Q ss_pred HHHHHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccC
Q 036378 410 VDEVFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKR 489 (815)
Q Consensus 410 ~~~l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p 489 (815)
+..+..++......+++|||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 16 ~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~ 95 (300)
T 3i32_A 16 LEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIP 95 (300)
T ss_dssp HHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCC
T ss_pred HHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCcccc
Confidence 34455666666688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 490 DVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 490 ~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
+|++||+||+|.+.++|+||+|||||.|++|.|++|+++.+...++.+.
T Consensus 96 ~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie 144 (300)
T 3i32_A 96 QVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALE 144 (300)
T ss_dssp CCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHH
T ss_pred ceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887777654
No 85
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.86 E-value=3.2e-20 Score=215.24 Aligned_cols=132 Identities=18% Similarity=0.228 Sum_probs=89.9
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCC-ceeeeec
Q 036378 197 YGYDSFRDGQLEAIKM----VLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IHGGFLS 271 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~----il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~-~~~~~i~ 271 (815)
.|| .+||+|.+++.. +..|+++++.+|||+|||++|++|++..+++++|++||++|+.|+++.+... ++...+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 578 899999998765 4578999999999999999999999999999999999999999999988762 2222222
Q ss_pred cCCC----------hH-----------------HH--HHHHHHH--------------hcCCceEEEeChhhhhchhhhh
Q 036378 272 SSQR----------PE-----------------EV--AETIRLI--------------QVGAIKVLFVSPERFLNADFLS 308 (815)
Q Consensus 272 ~~~~----------~~-----------------~~--~~~~~~l--------------~~g~~~Ili~TPe~L~~~~~~~ 308 (815)
+... .. +. ...++.+ ....++|||+|+..|++.....
T Consensus 83 gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~ 162 (540)
T 2vl7_A 83 GKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRN 162 (540)
T ss_dssp --------------------------------------------------------CTTGGGCSEEEEETHHHHSHHHHH
T ss_pred CCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHH
Confidence 1100 00 00 0001110 0124699999999999876554
Q ss_pred hhh------hcCcccEEEEeccccccc
Q 036378 309 IFT------ATSLISLVVVDEAHCVSE 329 (815)
Q Consensus 309 ~~~------~~~~i~~lViDEaH~i~~ 329 (815)
.+. .+....++||||||.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 163 SVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp HHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred hhCcccccccCcCCCEEEEEccccHHH
Confidence 432 245678999999999943
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.77 E-value=2.6e-23 Score=204.11 Aligned_cols=126 Identities=18% Similarity=0.284 Sum_probs=116.1
Q ss_pred HHHHHhhccccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccccCCcc
Q 036378 413 VFSFHRSSKHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLDKRDVG 492 (815)
Q Consensus 413 l~~l~~~~~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID~p~v~ 492 (815)
+..++......+++|||+++..++.+++.|...|+.+..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|+++
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~ 100 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVS 100 (170)
Confidence 33444445567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhh
Q 036378 493 AVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 493 ~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~ 538 (815)
+||+||+|.+..+|+||+||+||.|+.|.|++|+++.|...++.+.
T Consensus 101 ~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 146 (170)
T 2yjt_D 101 HVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVG 146 (170)
Confidence 9999999999999999999999999999999999988877666553
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.80 E-value=6.5e-20 Score=186.47 Aligned_cols=160 Identities=20% Similarity=0.191 Sum_probs=103.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc---------CCcEEEEcccHHHHHH-HHHhcCCC--
Q 036378 197 YGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL---------PGLTLVVCPLVALMID-QLRHLPPV-- 264 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~---------~~~~lVl~P~~~L~~q-~~~~l~~~-- 264 (815)
.+...|+++|.++++.++.++++++.+|||+|||++|+++++.. ++++||++|+++|+.| +.+.+.++
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 45568999999999999999999999999999999999998743 6799999999999999 55555542
Q ss_pred --ceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhh-----hhcCcccEEEEeccccccccccCchHH
Q 036378 265 --IHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF-----TATSLISLVVVDEAHCVSEWSHNFRPS 337 (815)
Q Consensus 265 --~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~-----~~~~~i~~lViDEaH~i~~~g~~fr~~ 337 (815)
+....+.+...... ....+.. .++|+|+||++|......... ..+.++++|||||||++... +.+..-
T Consensus 109 ~~~~v~~~~g~~~~~~---~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~-~~~~~~ 183 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKI---SFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE-AVYNNI 183 (216)
T ss_dssp TTSCEEECCC---CCC---CHHHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHH
T ss_pred cCceEEEEeCCcccch---hHHhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC-CcHHHH
Confidence 23333333221111 1111111 479999999999876544321 12568899999999999742 122222
Q ss_pred HHHHHHHHHHHhc---------ccceeEeeecc
Q 036378 338 YMRLRASLLRARL---------NVECILAMTAT 361 (815)
Q Consensus 338 ~~~i~~~~~~~~~---------~~~~vl~lSAT 361 (815)
+.......++... +.+++|+||||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 184 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 2222111111111 56789999998
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.80 E-value=3.5e-17 Score=190.33 Aligned_cols=316 Identities=18% Similarity=0.161 Sum_probs=198.1
Q ss_pred CCCHHHHHHHHHH----HcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCC-----ceeeeec
Q 036378 201 SFRDGQLEAIKMV----LDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-----IHGGFLS 271 (815)
Q Consensus 201 ~~~~~Q~~ai~~i----l~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~-----~~~~~i~ 271 (815)
.+||+|.+++..+ ..|+++++.+|||+|||++|++|++..+.+++|++||++|+.|+.+.+... ++...+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~ 82 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLV 82 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEc
Confidence 6999999977754 478999999999999999999999999999999999999999999988864 2222222
Q ss_pred cCC---------------------------------ChHHHHHHH---------------HHHhcCCceEEEeChhhhhc
Q 036378 272 SSQ---------------------------------RPEEVAETI---------------RLIQVGAIKVLFVSPERFLN 303 (815)
Q Consensus 272 ~~~---------------------------------~~~~~~~~~---------------~~l~~g~~~Ili~TPe~L~~ 303 (815)
+.. ......... +.. ...++|||+|+..|++
T Consensus 83 gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~-~~~adIVV~~~~~l~~ 161 (551)
T 3crv_A 83 GKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNS-LYKADVIALTYPYFFI 161 (551)
T ss_dssp CHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHH-GGGCSEEEEETHHHHC
T ss_pred cccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhh-hhcCCEEEeCchHhcC
Confidence 100 001111110 111 2358999999999998
Q ss_pred hhhhhhhhhcCcccEEEEeccccccccccCc-------------------------------------------------
Q 036378 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNF------------------------------------------------- 334 (815)
Q Consensus 304 ~~~~~~~~~~~~i~~lViDEaH~i~~~g~~f------------------------------------------------- 334 (815)
......+.......++||||||.+.+ ..++
T Consensus 162 ~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 240 (551)
T 3crv_A 162 DRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYIKVENV 240 (551)
T ss_dssp HHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCEECSCC
T ss_pred HHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccC
Confidence 76544333224678999999999876 2110
Q ss_pred ----hHHHHHHH------------------------HHHHHH---------------------------hc-cc-ceeEe
Q 036378 335 ----RPSYMRLR------------------------ASLLRA---------------------------RL-NV-ECILA 357 (815)
Q Consensus 335 ----r~~~~~i~------------------------~~~~~~---------------------------~~-~~-~~vl~ 357 (815)
......+. ..++.. .. .. ..+|+
T Consensus 241 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~~svIl 320 (551)
T 3crv_A 241 PKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNELSIIL 320 (551)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccCceEEE
Confidence 00111010 000000 11 12 68999
Q ss_pred eecccChhHHHHHHHHhcCCccce-------eeccccCCCeeEEEEecCCc--c---chhhhhhHHHHHHHHhhccccce
Q 036378 358 MTATATTTTLRDVMSALEIPLSNL-------IQKAQLRDNLQLSVSLSGNN--R---QNERSAYVDEVFSFHRSSKHYYI 425 (815)
Q Consensus 358 lSAT~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~l~~~v~~~~~~--~---~~~~~~~~~~l~~l~~~~~~~~~ 425 (815)
+|||+++ ...+.+.++++.... +..++ ..+..+.+...-.. . ........+.+..+... ..+.+
T Consensus 321 tSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~-~~g~~ 396 (551)
T 3crv_A 321 MSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ-AKANV 396 (551)
T ss_dssp EESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-CSSEE
T ss_pred EeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-CCCCE
Confidence 9999987 566777888762221 22333 44444333221111 0 11112233333344433 34589
Q ss_pred EEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEc--cccccccccC-----CccEEEEeC
Q 036378 426 LQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVAT--VAFGMGLDKR-----DVGAVIHYS 498 (815)
Q Consensus 426 ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT--~~~~~GID~p-----~v~~VI~~d 498 (815)
+||+++....+.+++. .+..+..=..+++ +.++++.|+.+.--||+|| ..|..|||+| ..+.||...
T Consensus 397 lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~ 470 (551)
T 3crv_A 397 LVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVG 470 (551)
T ss_dssp EEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEES
T ss_pred EEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEc
Confidence 9999999999999873 3444444334555 3556777754445799998 5999999999 378899988
Q ss_pred CCCC---------------------H-H--------HHHHHHcccCCCCCCceEEEEecc
Q 036378 499 LPES---------------------L-E--------EYVQEIGRAGRDGRLSYCHLFLDD 528 (815)
Q Consensus 499 ~P~s---------------------~-~--------~y~Qr~GRaGR~g~~g~~i~l~~~ 528 (815)
+|.. . . ...|-+||+=|....--+++++++
T Consensus 471 lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 471 IPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp CCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 7741 1 1 125899999998655444555544
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.72 E-value=6.5e-18 Score=174.67 Aligned_cols=167 Identities=16% Similarity=0.055 Sum_probs=113.7
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc--------CCcEEEEcccHHHHHHHHHh
Q 036378 189 LGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL--------PGLTLVVCPLVALMIDQLRH 260 (815)
Q Consensus 189 l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~--------~~~~lVl~P~~~L~~q~~~~ 260 (815)
+.++++.. +.-.++++|.++++.+..|++++++||||||||+++.++++.. ...+++++|+++|+.|+.+.
T Consensus 50 ~~~~~~~~-~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~ 128 (235)
T 3llm_A 50 LQAILQER-ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAER 128 (235)
T ss_dssp HHHHHHHH-HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHH-hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHH
Confidence 33444433 3345789999999999999999999999999999888887642 23799999999999999888
Q ss_pred cCCCcee---eeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccc-cccccCchH
Q 036378 261 LPPVIHG---GFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCV-SEWSHNFRP 336 (815)
Q Consensus 261 l~~~~~~---~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i-~~~g~~fr~ 336 (815)
+...... ..+...... ......++++|+|+||++|.+.+.. .+.++++|||||||++ .+. +|..
T Consensus 129 ~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~--~~~~ 196 (235)
T 3llm_A 129 VAFERGEEPGKSCGYSVRF------ESILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINT--DFLL 196 (235)
T ss_dssp HHHTTTCCTTSSEEEEETT------EEECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHH--HHHH
T ss_pred HHHHhccccCceEEEeech------hhccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcch--HHHH
Confidence 7642110 000000000 0001113589999999999887544 2779999999999985 322 2322
Q ss_pred HHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhc
Q 036378 337 SYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 337 ~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
..+..+.. ..+..++++||||++.+. +.+++.
T Consensus 197 ---~~l~~i~~-~~~~~~~il~SAT~~~~~---~~~~~~ 228 (235)
T 3llm_A 197 ---VVLRDVVQ-AYPEVRIVLMSATIDTSM---FCEYFF 228 (235)
T ss_dssp ---HHHHHHHH-HCTTSEEEEEECSSCCHH---HHHHTT
T ss_pred ---HHHHHHHh-hCCCCeEEEEecCCCHHH---HHHHcC
Confidence 22233333 345678999999999876 555554
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.72 E-value=1.2e-17 Score=177.58 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=108.4
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHc----CCcEEEEcccHHHHHHHHHhcCCCce-----eeee
Q 036378 200 DSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMIL----PGLTLVVCPLVALMIDQLRHLPPVIH-----GGFL 270 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~----~~~~lVl~P~~~L~~q~~~~l~~~~~-----~~~i 270 (815)
-.|+|+|.++++.++.+++.++++|||+|||++++.++... .+++|||+|+++|+.|+.+++.+... ...+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~ 191 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEEC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEE
Confidence 37999999999999999999999999999999998887642 45899999999999999999987422 2233
Q ss_pred ccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhc
Q 036378 271 SSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARL 350 (815)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~ 350 (815)
.++..... ...+..+|+|+||+.+..... ..+.++++|||||||++.. +.+.. +++...
T Consensus 192 ~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~----~~~~~~~~vIiDEaH~~~~------~~~~~----il~~~~ 250 (282)
T 1rif_A 192 GGGASKDD-------KYKNDAPVVVGTWQTVVKQPK----EWFSQFGMMMNDECHLATG------KSISS----IISGLN 250 (282)
T ss_dssp STTCSSTT-------CCCTTCSEEEECHHHHTTSCG----GGGGGEEEEEEETGGGCCH------HHHHH----HTTTCT
T ss_pred eCCCcchh-------hhccCCcEEEEchHHHHhhHH----HHHhhCCEEEEECCccCCc------ccHHH----HHHHhh
Confidence 33322111 111358999999999876522 1256789999999999962 23333 344444
Q ss_pred ccceeEeeecccChhH
Q 036378 351 NVECILAMTATATTTT 366 (815)
Q Consensus 351 ~~~~vl~lSAT~~~~~ 366 (815)
...++++||||+....
T Consensus 251 ~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 251 NCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TCCEEEEECSSCCTTS
T ss_pred cCCeEEEEeCCCCCcc
Confidence 5789999999997653
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.69 E-value=1.3e-16 Score=164.89 Aligned_cols=139 Identities=24% Similarity=0.201 Sum_probs=106.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCC-ce-eeeeccCCChH
Q 036378 200 DSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPV-IH-GGFLSSSQRPE 277 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~-~~-~~~i~~~~~~~ 277 (815)
..++++|.+++..++.++++++++|||+|||++++.++...+..+||++|+++|+.|+.+.+.++ +. ...+.+...
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-- 169 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-- 169 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB--
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC--
Confidence 47999999999999999999999999999999999999888999999999999999999999882 22 333333321
Q ss_pred HHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEe
Q 036378 278 EVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILA 357 (815)
Q Consensus 278 ~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~ 357 (815)
...+|+|+|++.+..... .+ ...+++|||||||++... . |..+ . ...+..++++
T Consensus 170 -----------~~~~i~v~T~~~l~~~~~--~~--~~~~~llIiDEaH~l~~~--~----~~~i----~-~~~~~~~~l~ 223 (237)
T 2fz4_A 170 -----------ELKPLTVSTYDSAYVNAE--KL--GNRFMLLIFDEVHHLPAE--S----YVQI----A-QMSIAPFRLG 223 (237)
T ss_dssp -----------CCCSEEEEEHHHHHHTHH--HH--TTTCSEEEEECSSCCCTT--T----HHHH----H-HTCCCSEEEE
T ss_pred -----------CcCCEEEEeHHHHHhhHH--Hh--cccCCEEEEECCccCCCh--H----HHHH----H-HhccCCEEEE
Confidence 247899999999865432 11 246899999999999753 2 2333 2 2335678999
Q ss_pred eecccChhH
Q 036378 358 MTATATTTT 366 (815)
Q Consensus 358 lSAT~~~~~ 366 (815)
||||+....
T Consensus 224 LSATp~r~D 232 (237)
T 2fz4_A 224 LTATFERED 232 (237)
T ss_dssp EEESCC---
T ss_pred EecCCCCCC
Confidence 999998654
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.65 E-value=1e-14 Score=171.02 Aligned_cols=167 Identities=14% Similarity=0.057 Sum_probs=101.5
Q ss_pred eeEeeecccChhHHHHHHHHhcCCcccee--eccccCCCeeEEEEecCCc-----cchhhhhhHHHHHHHHhhccccceE
Q 036378 354 CILAMTATATTTTLRDVMSALEIPLSNLI--QKAQLRDNLQLSVSLSGNN-----RQNERSAYVDEVFSFHRSSKHYYIL 426 (815)
Q Consensus 354 ~vl~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~v~~~~~~-----~~~~~~~~~~~l~~l~~~~~~~~~i 426 (815)
.+|++|||+++ ...+.+.++++ ...+ ..++...+....+...-.. .......+.+.+..++... .+.++
T Consensus 377 ~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~l 452 (620)
T 4a15_A 377 KTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTI 452 (620)
T ss_dssp EEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEE
T ss_pred eEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEE
Confidence 46899999987 56677788876 3222 2233344443333221111 1111122333344444433 45689
Q ss_pred EEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcc--ccccccccCC--ccEEEEeCCCCC
Q 036378 427 QISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV--AFGMGLDKRD--VGAVIHYSLPES 502 (815)
Q Consensus 427 vf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~--~~~~GID~p~--v~~VI~~d~P~s 502 (815)
+|+++....+.+++.|+ .+... ..-+++..++..++++|+ ++-.||+||. .|..|||+|+ .+.||...+|..
T Consensus 453 vlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp EEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCC
T ss_pred EEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCC
Confidence 99999999999999887 23333 556677788999999999 8888999985 8999999997 678999988852
Q ss_pred H-----------------------------HHHHHHHcccCCCCCCceEEEEecc
Q 036378 503 L-----------------------------EEYVQEIGRAGRDGRLSYCHLFLDD 528 (815)
Q Consensus 503 ~-----------------------------~~y~Qr~GRaGR~g~~g~~i~l~~~ 528 (815)
. ....|-+||+=|....--+++++++
T Consensus 529 ~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 529 RPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1 1126999999998654334444443
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.63 E-value=4.2e-16 Score=164.08 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=91.9
Q ss_pred HHHHHHHHhhc--cccceEEEecchHHHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHHHhcC-Cce-EEEEcccccc
Q 036378 410 VDEVFSFHRSS--KHYYILQISGKHFETDLISRYLCDN-SISVKSYHSGIPAKDRSRIQELFCSN-KIR-VVVATVAFGM 484 (815)
Q Consensus 410 ~~~l~~l~~~~--~~~~~ivf~~s~~~~e~l~~~L~~~-g~~v~~~h~~~~~~~R~~i~~~F~~g-~~~-VLVaT~~~~~ 484 (815)
+..+..++... .+.+++|||++...++.++..|... |+.+..+||+++..+|.+++++|++| +.+ +|++|+++++
T Consensus 98 ~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~ 177 (271)
T 1z5z_A 98 MIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGF 177 (271)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCC
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcC
Confidence 33344444433 5789999999999999999999985 99999999999999999999999998 777 7899999999
Q ss_pred ccccCCccEEEEeCCCCCHHHHHHHHcccCCCCCCceE--EEEecccc
Q 036378 485 GLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYC--HLFLDDIT 530 (815)
Q Consensus 485 GID~p~v~~VI~~d~P~s~~~y~Qr~GRaGR~g~~g~~--i~l~~~~d 530 (815)
|||++++++||+||+|+++..|.|++||++|.|+.+.+ +.|+....
T Consensus 178 Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 178 GINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred CcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 99999999999999999999999999999999998655 55555543
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.49 E-value=3.3e-07 Score=107.19 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHH--HHHHHHHHHc-----CCcEEEEcccHHHHHHHHHh
Q 036378 188 NLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKS--LCYQIPAMIL-----PGLTLVVCPLVALMIDQLRH 260 (815)
Q Consensus 188 ~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKT--l~~~lp~l~~-----~~~~lVl~P~~~L~~q~~~~ 260 (815)
.+...|...|+-..-.+.|++|++.++.++.+++.|++|+||| ++++++++.. +.++++++||..++.+..+.
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~ 215 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHH
Confidence 3445555555433337899999999999999999999999999 7788888752 45899999999999988776
Q ss_pred cCC
Q 036378 261 LPP 263 (815)
Q Consensus 261 l~~ 263 (815)
+..
T Consensus 216 ~~~ 218 (608)
T 1w36_D 216 LGK 218 (608)
T ss_dssp HTH
T ss_pred HHH
Confidence 654
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.80 E-value=6.7e-05 Score=88.51 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCChhHHHHHHHH---HHHcCCcEEEEcccHHHHHHHHHhcCC
Q 036378 201 SFRDGQLEAIKMVLDKKS-TMLVLPTGAGKSLCYQIP---AMILPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d-~li~apTGsGKTl~~~lp---~l~~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
.+++.|.+||..++..++ .||+||.|||||.+..-. ++..+.++||++||..-+.+..++|..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 578999999999998775 689999999999653322 234588999999999999999888754
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.75 E-value=0.00025 Score=83.20 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHH--HHHHH--cCCcEEEEcccHHHHHHHHHhcCC
Q 036378 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQ--IPAMI--LPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 199 ~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~--lp~l~--~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
...+++.|.+|+..++.+.-+++.||+|+|||.+.. +..+. .+.+++|++||...+.+..+.+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 346889999999999988888999999999996543 22233 467899999999999999888754
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.63 E-value=0.00013 Score=82.30 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=49.8
Q ss_pred cCCCCCCHHHHHHHHHHHcC----C-CEEEEcCCChhHHHHHHH--HHHH-cCC-cEEEEcccHHHHHHHHHhc
Q 036378 197 YGYDSFRDGQLEAIKMVLDK----K-STMLVLPTGAGKSLCYQI--PAMI-LPG-LTLVVCPLVALMIDQLRHL 261 (815)
Q Consensus 197 ~g~~~~~~~Q~~ai~~il~g----~-d~li~apTGsGKTl~~~l--p~l~-~~~-~~lVl~P~~~L~~q~~~~l 261 (815)
+.|..+++.|++|+..++.. + .+++.|+.|+|||.+... ..+. .+. .+++++||...+....+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 57889999999999987643 4 889999999999965422 2222 243 6999999999887776665
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00028 Score=84.79 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHH--HHHHH--cCCcEEEEcccHHHHHHHHHhcCC
Q 036378 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQ--IPAMI--LPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 199 ~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~--lp~l~--~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
+..+++.|.+|+..++.+.-+++.||.|+|||.+.. +..+. .+.++||++||...+.+..+++.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 346789999999999988788999999999996543 22222 478999999999999998888754
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.57 E-value=0.00017 Score=83.36 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHH--HHHH-HcCCcEEEEcccHHHHHHHHHhc
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQ--IPAM-ILPGLTLVVCPLVALMIDQLRHL 261 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~--lp~l-~~~~~~lVl~P~~~L~~q~~~~l 261 (815)
.+++.|++|+..++.++.+++.|+.|+|||.+.. +-.+ ..+..+++++||...+....+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh
Confidence 5789999999999999999999999999996532 2222 34778999999999988776654
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.53 E-value=0.00054 Score=82.22 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHH--HHHHH--cCCcEEEEcccHHHHHHHHHhcCC
Q 036378 200 DSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQ--IPAMI--LPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~--lp~l~--~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
..+++.|.+|+..++.+.-+++.||.|+|||.+.. +..+. .+.+++|++||...+.+..+.+..
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 45789999999999988888999999999996533 22233 367899999999999998888755
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.16 E-value=0.012 Score=69.23 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHH--HHHH-c----CCcEEEEcccHHHHHHHHHhcCC
Q 036378 200 DSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQI--PAMI-L----PGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~l--p~l~-~----~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
..+++.|.+||.. .+..++|.|+.|||||.+..- .-+. . +..+|++++|...+.+..+++.+
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHH
Confidence 4689999999973 366899999999999976432 2222 2 25799999999999998888764
No 102
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.64 E-value=0.0088 Score=57.74 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=22.8
Q ss_pred HHHHHHHHHHH---------cCCCEEEEcCCChhHHHHHH
Q 036378 204 DGQLEAIKMVL---------DKKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 204 ~~Q~~ai~~il---------~g~d~li~apTGsGKTl~~~ 234 (815)
+.|++++..+. .|+.+++.||+|+|||....
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 45666665543 37789999999999997543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.43 E-value=0.024 Score=61.71 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHH----c-CCcEEEEcccHHHHHHHHHhcCC
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMI----L-PGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~----~-~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
.++|+|+.++..+...+-+++..+-+.|||.+....++. . +..+++++|+..-+..+.+.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 689999999988765667899999999999765544332 2 45799999999988877765554
No 104
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.27 E-value=0.036 Score=60.67 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=22.2
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl 247 (815)
.+.+|+.||+|+|||......+-..+...+.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 56899999999999987655544444433333
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.23 E-value=0.014 Score=67.82 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHH---H-c-CCcEEEEcccHHHHHHHHHhcCC
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAM---I-L-PGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l---~-~-~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
.++|+|+.++..+-..+-.++..+-|+|||.+....++ . . +..+++++|+...+.+....+..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 58999999999886667789999999999976543322 2 2 34799999999999887776654
No 106
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.17 E-value=0.081 Score=55.75 Aligned_cols=113 Identities=12% Similarity=-0.007 Sum_probs=83.2
Q ss_pred cccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccccccc-----cCCccEEE
Q 036378 421 KHYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFGMGLD-----KRDVGAVI 495 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~~GID-----~p~v~~VI 495 (815)
.+.++++|++..+..+.+.++|...|+....+.|.....+ .+. .++...|.+.|.+.+-|+| ....+.||
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI 198 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGINFTKYPIKSKARFDMLI 198 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEE
T ss_pred CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECCCCCCcCcccccCCCCCEEE
Confidence 4678999999999999999999999999999999855432 211 2456666666777777786 67889999
Q ss_pred EeCCCCCHHH-HHHHHcccCCCC----CCceEEEEeccccHHHHHHhh
Q 036378 496 HYSLPESLEE-YVQEIGRAGRDG----RLSYCHLFLDDITYFRLRSLM 538 (815)
Q Consensus 496 ~~d~P~s~~~-y~Qr~GRaGR~g----~~g~~i~l~~~~d~~~l~~~~ 538 (815)
.||.-+++.+ .+|.+-|+.|.| ++-.++.|++....+...-.+
T Consensus 199 ~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 199 CLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp ECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred EECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 9999998876 489888888863 456788888887776655443
No 107
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.92 E-value=0.012 Score=68.13 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHc--CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHH
Q 036378 201 SFRDGQLEAIKMVLD--KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEE 278 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~--g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 278 (815)
.+|.-|.+|+..++. ....++.|+-|.|||.+.-+.+-.....++|.+|+.+-+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~l~~~~~~--------------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAGE--------------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHHHHHHHGG---------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHHHHHHhhC---------------
Confidence 688999999999887 335688999999999776666655567789999997765533322111
Q ss_pred HHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEee
Q 036378 279 VAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAM 358 (815)
Q Consensus 279 ~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~l 358 (815)
.|-|..|..+.. .....++||||||=.|- ..++..++ ..-+.++|
T Consensus 240 -------------~i~~~~Pd~~~~--------~~~~~dlliVDEAAaIp----------~pll~~ll----~~~~~v~~ 284 (671)
T 2zpa_A 240 -------------KFRFIAPDALLA--------SDEQADWLVVDEAAAIP----------APLLHQLV----SRFPRTLL 284 (671)
T ss_dssp -------------GCCBCCHHHHHH--------SCCCCSEEEEETGGGSC----------HHHHHHHH----TTSSEEEE
T ss_pred -------------CeEEeCchhhhh--------CcccCCEEEEEchhcCC----------HHHHHHHH----hhCCeEEE
Confidence 144556665431 14468999999999885 23323333 23335777
Q ss_pred ecccCh
Q 036378 359 TATATT 364 (815)
Q Consensus 359 SAT~~~ 364 (815)
|.|...
T Consensus 285 ~tTv~G 290 (671)
T 2zpa_A 285 TTTVQG 290 (671)
T ss_dssp EEEBSS
T ss_pred EecCCc
Confidence 878653
No 108
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.08 Score=56.04 Aligned_cols=19 Identities=11% Similarity=-0.057 Sum_probs=16.1
Q ss_pred CCCEEEEcCCChhHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~ 234 (815)
+.++++.||+|+|||.+..
T Consensus 45 ~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5589999999999998653
No 109
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.81 E-value=0.048 Score=54.66 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=16.2
Q ss_pred CCCEEEEcCCChhHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~ 234 (815)
++.+++.||+|+|||....
T Consensus 52 ~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 6789999999999997543
No 110
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=94.87 E-value=0.16 Score=48.50 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=82.9
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
..++||.++++.-+......|.. ++....+++.+...++...++....|.++|||+|.- + ...+. +..+++|
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~-----~~Gld-i~~~~~V 103 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-F-----GRGMD-IERVNIA 103 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-C-----STTCC-GGGCSEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-h-----hcCcc-hhhCCEE
Confidence 57899999999999999999976 677888999999999999999999999999999932 2 11222 5567777
Q ss_pred EEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 320 VVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 320 ViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
|.-+.. | + ...|.....+.-|.......+++++..-.......+.+.+...
T Consensus 104 i~~d~p----~--~-~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (172)
T 1t5i_A 104 FNYDMP----E--D-SDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN 154 (172)
T ss_dssp EESSCC----S--S-HHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCC
T ss_pred EEECCC----C--C-HHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcc
Confidence 763332 2 2 3345555455555443444455544332234455566665543
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.66 E-value=0.076 Score=56.38 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=16.8
Q ss_pred CCCEEEEcCCChhHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp 236 (815)
+..+++.||+|+|||.....-
T Consensus 37 ~~~lll~G~~GtGKT~la~~i 57 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAA 57 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 468999999999999765433
No 112
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.64 E-value=0.35 Score=49.93 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=21.5
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~lV 246 (815)
++.+++.||+|+|||......+-..+...+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 5679999999999998665444444443333
No 113
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.58 E-value=0.075 Score=58.63 Aligned_cols=44 Identities=14% Similarity=-0.018 Sum_probs=35.2
Q ss_pred CEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCC
Q 036378 218 STMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
-.++.|+.|+|||...+-- ......+|++||++++.++.+.+.+
T Consensus 163 v~~I~G~aGsGKTt~I~~~--~~~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSR--VNFEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEECTTSCHHHHHHHH--CCTTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHH--hccCCeEEEeCCHHHHHHHHHHhhh
Confidence 4678999999999864322 2336789999999999999998865
No 114
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.38 E-value=0.16 Score=53.20 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=16.2
Q ss_pred CCCEEEEcCCChhHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~l 235 (815)
+..+++.||+|+|||.....
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34799999999999986543
No 115
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.28 E-value=0.13 Score=50.33 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=15.5
Q ss_pred CCEEEEcCCChhHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~ 234 (815)
+.+++.||+|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 689999999999997543
No 116
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=94.23 E-value=0.43 Score=46.39 Aligned_cols=134 Identities=13% Similarity=0.058 Sum_probs=84.8
Q ss_pred ChhHHHHHHHHHHH-cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhc
Q 036378 226 GAGKSLCYQIPAMI-LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLN 303 (815)
Q Consensus 226 GsGKTl~~~lp~l~-~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~ 303 (815)
...|.. +++-.+. .++++||.++++.-+......|.. ++....+++.+...++...++.+..|.++|||+|.- +
T Consensus 39 ~~~K~~-~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~-~-- 114 (191)
T 2p6n_A 39 EEAKMV-YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDV-A-- 114 (191)
T ss_dssp GGGHHH-HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHH-H--
T ss_pred hHHHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCc-h--
Confidence 456654 3344443 367899999999999999999876 677888999999999999999999999999999932 1
Q ss_pred hhhhhhhhhcCcccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHh
Q 036378 304 ADFLSIFTATSLISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374 (815)
Q Consensus 304 ~~~~~~~~~~~~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l 374 (815)
...+. +..+++||.=+.. | + ...|.....+.-|......-+++++..........+.+.+
T Consensus 115 ---~~Gld-i~~v~~VI~~d~p----~--~-~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l 174 (191)
T 2p6n_A 115 ---SKGLD-FPAIQHVINYDMP----E--E-IENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALL 174 (191)
T ss_dssp ---HTTCC-CCCCSEEEESSCC----S--S-HHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHH
T ss_pred ---hcCCC-cccCCEEEEeCCC----C--C-HHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHH
Confidence 12222 5678887763322 2 2 2334433333333322333455554433344455555544
No 117
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=94.13 E-value=0.23 Score=46.76 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=80.6
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
.++++||.++++.-+....+.|.. ++....+++.+...++...++.+..|.++|||+|. .+ ...+. +..+++
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gld-~~~~~~ 106 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-VA-----ARGID-IENISL 106 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GG-----TTTCC-CSCCSE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-hh-----hcCCc-hhcCCE
Confidence 467899999999999999999876 67788899999999999999999999999999993 22 12222 567888
Q ss_pred EEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 319 VVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 319 lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
||.-... | + ...|.....+..|.......+++++ .........+.+.++..
T Consensus 107 Vi~~~~p----~--~-~~~~~qr~GR~~R~g~~g~~~~~~~-~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 107 VINYDLP----L--E-KESYVHRTGRTGRAGNKGKAISFVT-AFEKRFLADIEEYIGFE 157 (163)
T ss_dssp EEESSCC----S--S-HHHHHHHTTTSSCTTCCEEEEEEEC-GGGHHHHHHHHHHHTSC
T ss_pred EEEeCCC----C--C-HHHHHHhccccCcCCCCceEEEEec-HHHHHHHHHHHHHHCCC
Confidence 8764332 2 1 2234333233322222223344443 33444555666655543
No 118
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.09 E-value=0.2 Score=48.49 Aligned_cols=36 Identities=19% Similarity=0.069 Sum_probs=26.2
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLV 251 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~ 251 (815)
|+-.++.||.|+|||...+--+. ..+..++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 56678999999999987533332 3467789998884
No 119
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.03 E-value=0.043 Score=51.34 Aligned_cols=20 Identities=30% Similarity=0.197 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCChhHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~ 234 (815)
.|+.+++.||+|+|||....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47889999999999996543
No 120
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.95 E-value=0.34 Score=53.45 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=21.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 036378 647 IPTVANSIGATTIDVSNQLLNLKM 670 (815)
Q Consensus 647 ~~~~a~~~g~~~~~v~~~l~~l~~ 670 (815)
...+|.+.|.+..+|.+.|++..+
T Consensus 401 ~~ria~gsg~~~~~v~~ll~~~~~ 424 (433)
T 3kl4_A 401 MRRIAEGSGLEVEEVRELLEWYNN 424 (433)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHHH
Confidence 567999999999999999988754
No 121
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.86 E-value=7.8e-05 Score=85.59 Aligned_cols=343 Identities=12% Similarity=0.037 Sum_probs=192.8
Q ss_pred ccceEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccc------ccccccCCccEEE
Q 036378 422 HYYILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF------GMGLDKRDVGAVI 495 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~------~~GID~p~v~~VI 495 (815)
...+++++.++.-+++..+.|...|+.+..+|++.+..++..+...+..|..+|+++|.-- ...++..++.+||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 4678888999999999999999999999999999999999999999999999999999631 1224445666666
Q ss_pred EeCC----CC--CHHHHHHHHcccCCCCCCceEEEEeccccHHHHHHhhhcCCCCHHHHHHHHHHHhhcCCCCCCCeeec
Q 036378 496 HYSL----PE--SLEEYVQEIGRAGRDGRLSYCHLFLDDITYFRLRSLMYSDGVDEYAINKFLCQVFTNGMNSHGKLCSL 569 (815)
Q Consensus 496 ~~d~----P~--s~~~y~Qr~GRaGR~g~~g~~i~l~~~~d~~~l~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 569 (815)
.-.. .+ +...-+.++++.-+.- ++.-+++++. .... .+...+.+.++..... ....++
T Consensus 145 iDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSA-------------T~~~-~~~~~i~~~l~~~~~~-~~~~~~ 208 (523)
T 1oyw_A 145 VDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTA-------------TADD-TTRQDIVRLLGLNDPL-IQISSF 208 (523)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEES-------------CCCH-HHHHHHHHHHTCCSCE-EEECCC
T ss_pred EeCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeC-------------CCCH-HHHHHHHHHhCCCCCe-EEeCCC
Confidence 4110 00 1111122222221110 1111222211 1111 1222222222221100 000011
Q ss_pred chhHHHHHhCCCHHHHHHHHHHHHh--cCcccEEeccccccceEEEecCCchhhhh---------hhHHHHHHHHhhCCc
Q 036378 570 VKESASRKFDIKEEVMLTLLTCLEL--GEIQYLQLLPELKVTCTLNFHKTTPTLLA---------DKDKMVATILKKSET 638 (815)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~l~~le~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~lr~~~~ 638 (815)
...++...+.-.......++.++.. ...++|++.+...++.....+...+.... .....+.....
T Consensus 209 ~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~---- 284 (523)
T 1oyw_A 209 DRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR---- 284 (523)
T ss_dssp CCTTEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT----
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc----
Confidence 1111110000012233455666652 23567776655443322222111111011 11122222211
Q ss_pred CCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE--------ecCceEEEEEeCCCchhhhhHHHHHHH--HHHH
Q 036378 639 KQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYE--------LKDPAYCYTIVEVPSDFCALSAHLTKW--LSEV 708 (815)
Q Consensus 639 ~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 708 (815)
+...+=++|.+.+||+|..+|..++++-.+.+...|. .+.++.+++++... |.. ....+.+. -.++
T Consensus 285 --g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~-d~~-~~~~~~~~~~~~~~ 360 (523)
T 1oyw_A 285 --DDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA-DMA-WLRRCLEEKPQGQL 360 (523)
T ss_dssp --TSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH-HHH-HHHHHHHTSCCSHH
T ss_pred --CCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHH-HHH-HHHHHHhccCcHHH
Confidence 1122236777889999998887777766555555554 46678888887652 211 11111110 1123
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCchHHHHHHhcccCCCC--CCCCCc-cCCCCc----HHHHHHHHHHHH
Q 036378 709 ENCKVRKLDRMFHAAVFAVDVCEKTHGCNGSLHTPCLQKNILDYFRGDD--NCDVPN-KIGQSS----PFLRADIKVFLQ 781 (815)
Q Consensus 709 e~~~~~kl~~m~~y~~~~~~~~~~~~~~~~~~~~~cl~~~ll~YFge~~--~c~~c~-~~~~~~----~~~~~~i~~~l~ 781 (815)
++....++++|..|+ ++..|++++|++||||.. .|+.|. |..... +...+.+++++.
T Consensus 361 ~~~~~~~l~~m~~~~----------------~~~~crr~~l~~~f~e~~~~~c~~cd~c~~~~~~~d~~~~~~~~l~~~~ 424 (523)
T 1oyw_A 361 QDIERHKLNAMGAFA----------------EAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGSTDAQIALSTIG 424 (523)
T ss_dssp HHHHHHHHHHHHHHH----------------TCSSCHHHHHHHHTTCCCCSCCSCBHHHHSCCCEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------------hccccHhhhhHhhcCCCCCCCCCCCCCCCCCcccccchHHHHHHHHHHH
Confidence 456778999999999 467899999999999874 577666 443222 578899999997
Q ss_pred hccCCCCCHHHHHHHHhcCCCCcc
Q 036378 782 SNLNAKFTPRAVARILHGIASPAY 805 (815)
Q Consensus 782 ~~~~~~~~~~~ia~il~Gi~sp~~ 805 (815)
+..+ +++...++.+|.|..+.++
T Consensus 425 ~~~~-~~~~~~~~~~~~g~~~~~~ 447 (523)
T 1oyw_A 425 RVNQ-RFGMGYVVEVIRGANNQRI 447 (523)
T ss_dssp HTTT-CCCHHHHHHHHHTCCCHHH
T ss_pred Hhcc-CcCcchhHHHhcCCCcHhH
Confidence 7654 8999999999999776543
No 122
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.84 E-value=0.1 Score=48.24 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCChhHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~ 233 (815)
.+.++++.||+|+|||.+.
T Consensus 26 ~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp CSSCEEEEEETTCCHHHHH
T ss_pred CCCcEEEECCCCccHHHHH
Confidence 4678999999999999754
No 123
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=93.67 E-value=0.1 Score=39.12 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=31.2
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
+|+..+|...|+++.+|..+|+.|+++|+|..+
T Consensus 26 ldI~~~a~kygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 26 LDIEHFSKVYGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp EEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred EeHHHHHHHhCCCHHHHHHHHHHHHHCCCeecc
Confidence 699999999999999999999999999999865
No 124
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.26 E-value=0.29 Score=50.31 Aligned_cols=27 Identities=22% Similarity=-0.033 Sum_probs=19.3
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHcCCc
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMILPGL 243 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~~~~ 243 (815)
..+++.||+|+|||......+-..+..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~~~ 91 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESNFP 91 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 478999999999998765444433433
No 125
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.24 E-value=0.44 Score=52.94 Aligned_cols=21 Identities=19% Similarity=0.109 Sum_probs=16.7
Q ss_pred CCCEEEEcCCChhHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp 236 (815)
...+++.||+|+|||.....-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ai 150 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSI 150 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 357999999999999765433
No 126
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.21 E-value=0.14 Score=47.41 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=18.0
Q ss_pred cCCCEEEEcCCChhHHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp 236 (815)
.+.++++.||+|+|||.....-
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHH
Confidence 4678999999999999876543
No 127
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.18 E-value=0.21 Score=52.75 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=16.0
Q ss_pred CCCEEEEcCCChhHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~ 234 (815)
++.+++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999996543
No 128
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.11 E-value=0.26 Score=48.07 Aligned_cols=36 Identities=22% Similarity=0.056 Sum_probs=26.8
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLV 251 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~ 251 (815)
|+=.++.|++|+|||...+--+. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 55568899999999976554443 3478899999984
No 129
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.10 E-value=0.1 Score=52.24 Aligned_cols=36 Identities=19% Similarity=0.007 Sum_probs=26.6
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLV 251 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~ 251 (815)
|.-+++.|++|+|||...+-.+. ..+.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 55678889999999976543332 3467899998875
No 130
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.04 E-value=0.19 Score=53.28 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=20.4
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~l 245 (815)
.+.+|+.||+|+|||......+-..+...+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~ 80 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFF 80 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEE
Confidence 457999999999999866544433343333
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.92 E-value=0.47 Score=51.04 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHcCcEEEE
Q 036378 657 TTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 657 ~~~~v~~~l~~l~~~g~i~~~ 677 (815)
+...+...+..|...|++...
T Consensus 331 ~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 331 TLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHhCCCeEEE
Confidence 557899999999999998886
No 132
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.91 Score=49.40 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=40.8
Q ss_pred ccccccccccHHHHHHHhhhhhhHHH-HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCC
Q 036378 164 RRTASELELVEEAVRAVRDEASDENL-GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l-~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~ 242 (815)
..+|++++=.+++.+.|.+...-.-. .+.++. +|.. -.+.+|+.||.|+|||+..-.-|-..+.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~-~gi~--------------~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFES-LGIA--------------QPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHH-HTCC--------------CCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHh-CCCC--------------CCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 35889988888888888774321111 112221 2322 2468999999999999865444434344
Q ss_pred cEEEE
Q 036378 243 LTLVV 247 (815)
Q Consensus 243 ~~lVl 247 (815)
..+.|
T Consensus 209 ~f~~v 213 (405)
T 4b4t_J 209 KFIRV 213 (405)
T ss_dssp EEEEE
T ss_pred CceEE
Confidence 33333
No 133
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.72 E-value=1.4 Score=46.10 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=19.5
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILP 241 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~ 241 (815)
++.+++.||+|+|||+.....+-..+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC
Confidence 56799999999999986654443333
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.68 E-value=0.27 Score=53.10 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHcCcEEEEe
Q 036378 656 ATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 656 ~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
++...+...|..|...|+|....
T Consensus 330 ~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 330 RVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp CCHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCeEEee
Confidence 36689999999999999998864
No 135
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.49 E-value=0.38 Score=50.28 Aligned_cols=31 Identities=13% Similarity=-0.003 Sum_probs=20.8
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~~~~~lVl 247 (815)
+.+++.||+|+|||.....-+-..+...+.+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4678899999999986654444444444443
No 136
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.47 E-value=1.2 Score=44.99 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=18.7
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILP 241 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~ 241 (815)
.+.+++.||+|+|||......+-..+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 45689999999999986654443333
No 137
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.43 E-value=0.82 Score=48.45 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=29.6
Q ss_pred eeCHHHHHHHcCCCHHHHHHHHH-HHHHcCcEEEE
Q 036378 644 VFDIPTVANSIGATTIDVSNQLL-NLKMRGEITYE 677 (815)
Q Consensus 644 ~~~~~~~a~~~g~~~~~v~~~l~-~l~~~g~i~~~ 677 (815)
.+++..+|..+|+++..+.+.|+ +|...|+|.-.
T Consensus 279 ~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~ 313 (338)
T 3pfi_A 279 PIGLASIAAALSEDENTIEDVIEPYLLANGYIERT 313 (338)
T ss_dssp CBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEE
T ss_pred CchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecC
Confidence 35788999999999999999999 99999988654
No 138
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.35 E-value=0.84 Score=43.35 Aligned_cols=125 Identities=13% Similarity=0.044 Sum_probs=79.4
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
.+++||.++++.-+......|.. ++....+++.++..++...++.+..|.++|||+|.- + ...+. +..+++|
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-~-----~~Gid-~~~~~~V 106 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-C-----ARGID-VKQVTIV 106 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-C-----CTTTC-CTTEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-h-----hcCCC-cccCCEE
Confidence 57899999999999999999987 677888999999999999999999999999999931 1 12222 5678888
Q ss_pred EEecccccccccc---CchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 320 VVDEAHCVSEWSH---NFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 320 ViDEaH~i~~~g~---~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
|.-... |.. .-...|.....+.-|......-++++ ..........+.+.++..
T Consensus 107 i~~d~p----~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~-~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 107 VNFDLP----VKQGEEPDYETYLHRIGRTGRFGKKGLAFNMI-EVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp EESSCC----C--CCSCCHHHHHHHHCBC----CCEEEEEEE-CGGGHHHHHHHHHHHTCC
T ss_pred EEeCCC----CCccccCCHHHHHHHhcccccCCCCceEEEEE-ccchHHHHHHHHHHhcCc
Confidence 753322 111 11234444434333332222233333 333345556666666544
No 139
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.34 E-value=0.66 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=18.8
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMIL 240 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~ 240 (815)
.+.+|+.||+|+|||......+-..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3679999999999998665444333
No 140
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.33 E-value=0.63 Score=49.95 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=24.3
Q ss_pred HHHHHHcCCCH---HHHHHHHHHHHHcCcEEEE
Q 036378 648 PTVANSIGATT---IDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 648 ~~~a~~~g~~~---~~v~~~l~~l~~~g~i~~~ 677 (815)
..++..+|.++ ..+...|..|...|+|...
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 316 LNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 55677777655 8899999999999999876
No 141
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.32 E-value=0.37 Score=57.39 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=66.2
Q ss_pred cccceEEEecchHHHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccc-cccccccCCccEEE
Q 036378 421 KHYYILQISGKHFETDLISRYLCD----NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA-FGMGLDKRDVGAVI 495 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~-~~~GID~p~v~~VI 495 (815)
.+.++++.+.++.-+.++++.+.+ .|+.+..+||+++..+|..+++.+.+|+.+|+|+|.. +...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 457889999999888887776654 4899999999999999999999999999999999986 45567889999988
Q ss_pred EeC
Q 036378 496 HYS 498 (815)
Q Consensus 496 ~~d 498 (815)
.-.
T Consensus 496 IDE 498 (780)
T 1gm5_A 496 IDE 498 (780)
T ss_dssp EES
T ss_pred ecc
Confidence 543
No 142
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.31 E-value=1 Score=50.60 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=19.7
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPG 242 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~ 242 (815)
...+|+.||+|+|||++....+-..+.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~ 264 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGA 264 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCC
Confidence 457999999999999876544444333
No 143
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.26 E-value=0.44 Score=54.11 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=21.7
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~~~~~lVl 247 (815)
+.+++.||+|+|||.+....+-..+..++.+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 5789999999999987655544444444433
No 144
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.25 E-value=0.69 Score=49.72 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=20.8
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~l 245 (815)
.+.+|+.||+|+|||+.....+-..+...+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~ 113 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFF 113 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 457999999999999876544433343333
No 145
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.23 E-value=0.34 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=17.7
Q ss_pred CEEEEcCCChhHHHHHHHHHHHc
Q 036378 218 STMLVLPTGAGKSLCYQIPAMIL 240 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~~ 240 (815)
.+|+.||+|+|||......+-..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 68999999999998765544333
No 146
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.04 E-value=0.083 Score=51.99 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=14.6
Q ss_pred CEEEEcCCChhHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 218 d~li~apTGsGKTl~~~l 235 (815)
-+++.|+.|||||+....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 468999999999986543
No 147
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.91 E-value=1 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 036378 647 IPTVANSIGATTIDVSNQLLNLKM 670 (815)
Q Consensus 647 ~~~~a~~~g~~~~~v~~~l~~l~~ 670 (815)
...+|.+.|.+..+|.+.|++...
T Consensus 398 ~~ria~gsg~~~~~v~~ll~~~~~ 421 (443)
T 3dm5_A 398 IKRIARGSGTSTKDVKELLDQYRQ 421 (443)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHHH
Confidence 567999999999999999988754
No 148
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.81 E-value=0.48 Score=46.82 Aligned_cols=37 Identities=14% Similarity=-0.016 Sum_probs=26.2
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVA 252 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~ 252 (815)
|+=.++.++.|+|||...+--+. ..+.+++|+.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 44456889999999976554443 34788999998753
No 149
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.76 E-value=0.44 Score=49.57 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=19.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILP 241 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~ 241 (815)
++.+++.||+|+|||......+-..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 56899999999999986654443333
No 150
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.72 E-value=0.49 Score=47.98 Aligned_cols=30 Identities=30% Similarity=0.301 Sum_probs=20.5
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~l 245 (815)
.+.+++.||+|+|||......+-..+...+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 457899999999999865544433343333
No 151
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.63 E-value=2.2 Score=41.36 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.5
Q ss_pred CCEEEEcCCChhHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~ 233 (815)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 36999999999999754
No 152
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.59 E-value=1.2 Score=49.11 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=40.6
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCc
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~ 243 (815)
..+|++++=.++..+.|.+...-.-...-+-..+|.. -.+.+|+.||+|+|||+..-..|-..+..
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~--------------~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK--------------PPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC--------------CCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC--------------CCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 3578999888888888777421111111111112321 14689999999999998655444444443
Q ss_pred EEEE
Q 036378 244 TLVV 247 (815)
Q Consensus 244 ~lVl 247 (815)
.+.+
T Consensus 243 ~~~v 246 (437)
T 4b4t_L 243 FIFS 246 (437)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 3333
No 153
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.40 E-value=0.43 Score=53.53 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=62.1
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcccHHHHHHHHHhcCCCcee--eeecc---------CCCh---HHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCPLVALMIDQLRHLPPVIHG--GFLSS---------SQRP---EEVAE 281 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~~~~--~~i~~---------~~~~---~~~~~ 281 (815)
|....+.+-||||||++..-.+-..++.+|||+|....|.+.+..|..+... ....+ .... ..+-.
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~ 93 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHH
T ss_pred CCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHH
Confidence 5567899999999998654444445778999999999999999999864321 11111 0111 12334
Q ss_pred HHHHHhcCCceEEEeChhhhhchh
Q 036378 282 TIRLIQVGAIKVLFVSPERFLNAD 305 (815)
Q Consensus 282 ~~~~l~~g~~~Ili~TPe~L~~~~ 305 (815)
.+..+..++..|||+|...+....
T Consensus 94 ~l~~L~~~~~~ivv~sv~al~~~~ 117 (483)
T 3hjh_A 94 TLYQLPTMQRGVLIVPVNTLMQRV 117 (483)
T ss_dssp HHHHGGGCCSSEEEEEHHHHHBCC
T ss_pred HHHHHHhCCCCEEEEEHHHHhhcC
Confidence 455666777789999999987653
No 154
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.35 E-value=0.71 Score=48.65 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=12.5
Q ss_pred cccEEEEecccccc
Q 036378 315 LISLVVVDEAHCVS 328 (815)
Q Consensus 315 ~i~~lViDEaH~i~ 328 (815)
..++|+|||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 67899999999886
No 155
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.95 E-value=1.8 Score=47.66 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=39.9
Q ss_pred ccccccccccHHHHHHHhhhhhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCCc
Q 036378 164 RRTASELELVEEAVRAVRDEASDENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPGL 243 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~~ 243 (815)
..+|++.+=..++.+.|.+...-.-...-+-..+|.. -.+.+|+.||+|+|||+..-.-|-..+..
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~--------------~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGID--------------PPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC--------------CCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC--------------CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3588888877888887777321111111111112422 24679999999999998654444333433
Q ss_pred EEEE
Q 036378 244 TLVV 247 (815)
Q Consensus 244 ~lVl 247 (815)
.+.+
T Consensus 234 ~~~v 237 (428)
T 4b4t_K 234 FIRV 237 (428)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 3333
No 156
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.93 E-value=0.63 Score=51.48 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=39.2
Q ss_pred ccccccccccHHHHHHHhhhhhhHHH-HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCC
Q 036378 164 RRTASELELVEEAVRAVRDEASDENL-GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l-~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~ 242 (815)
..+|++.+=..++.+.|.+...-.-. .+.++. +|.. -.+.+|+.||.|+|||+..-..|-..+.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~-~Gi~--------------pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFAT-LGID--------------PPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHH-HTCC--------------CCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHH-CCCC--------------CCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 35889998888888888774321111 112221 3422 2568999999999999865444433333
No 157
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.89 E-value=0.58 Score=50.30 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl 247 (815)
.+.+|+.||+|+|||......+-..+...+.+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 56899999999999987655544444444333
No 158
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=90.87 E-value=0.17 Score=59.62 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHH---HH----cCCcEEEEcccHHHHHHHHHhcCC
Q 036378 201 SFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MI----LPGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 201 ~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~---l~----~~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
.+++.|++||.. .+..++|.|+.|||||.+..--+ +. ....+|+|+.|+..+.+..+++.+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 478999999975 36789999999999997643221 22 135799999999999988877754
No 159
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=90.78 E-value=1.5 Score=43.08 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=61.9
Q ss_pred HcCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCccc
Q 036378 239 ILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLIS 317 (815)
Q Consensus 239 ~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~ 317 (815)
..++.+||.++++.-+......|.. ++....+++.++..++...++....|..+|+|+|.- + ...+. +..++
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-~-----~~Gid-i~~v~ 101 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-A-----ARGLD-IPQVD 101 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-T-----TCSSS-CCCBS
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-h-----hcCCC-CccCc
Confidence 3478999999999999999998876 677889999999999999999999999999999932 1 12222 56777
Q ss_pred EEEE
Q 036378 318 LVVV 321 (815)
Q Consensus 318 ~lVi 321 (815)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 160
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.77 E-value=0.39 Score=51.85 Aligned_cols=124 Identities=12% Similarity=0.017 Sum_probs=82.6
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
.++++||.++++.-+....+.|.. ++....+++.+...++...++....|..+|||+|.- ....+. +..+++
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gid-i~~~~~ 321 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMD-IERVNI 321 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC------CSSCBC-CTTEEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh------hhcCCC-cccCCE
Confidence 467899999999999999999976 677788999999999999999999999999999931 122223 567888
Q ss_pred EEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 319 VVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 319 lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
||.-..-. -...|.....+..|.......+++++..-.......+.+.+...
T Consensus 322 Vi~~~~p~-------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (391)
T 1xti_A 322 AFNYDMPE-------DSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN 373 (391)
T ss_dssp EEESSCCS-------SHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCC-------CHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCC
Confidence 88754331 12334443343333322333455554433334456666666544
No 161
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.76 E-value=0.71 Score=50.52 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=39.2
Q ss_pred ccccccccccHHHHHHHhhhhhhHHH-HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcCC
Q 036378 164 RRTASELELVEEAVRAVRDEASDENL-GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILPG 242 (815)
Q Consensus 164 ~~~~~~l~l~~~l~~~l~~~~~~~~l-~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~~ 242 (815)
..+|++++=.+++.+.|.+...-.-. .+..+. +|.. -.+.+|+.||.|+|||+..-..|-..+.
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~-~Gi~--------------~prGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEE-MGIK--------------PPKGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHH-HTCC--------------CCSEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHh-CCCC--------------CCCCCceECCCCchHHHHHHHHHHHhCC
Confidence 35889988778888888773211000 011111 2321 1467999999999999865444433343
Q ss_pred cEEE
Q 036378 243 LTLV 246 (815)
Q Consensus 243 ~~lV 246 (815)
..+.
T Consensus 243 ~fi~ 246 (437)
T 4b4t_I 243 TFLR 246 (437)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 3333
No 162
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.76 E-value=0.78 Score=45.31 Aligned_cols=37 Identities=14% Similarity=-0.079 Sum_probs=26.0
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVA 252 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~ 252 (815)
|.-.++.++.|+|||...+--+. ..+.+++|+.|.+.
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 56678899999999975443332 33778999999754
No 163
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.74 E-value=0.47 Score=44.92 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.7
Q ss_pred CCCEEEEcCCChhHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~ 234 (815)
...+++.||+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4578999999999997543
No 164
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=90.46 E-value=0.27 Score=58.36 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHH--HHHHH-c----CCcEEEEcccHHHHHHHHHhcCC
Q 036378 200 DSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQ--IPAMI-L----PGLTLVVCPLVALMIDQLRHLPP 263 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~--lp~l~-~----~~~~lVl~P~~~L~~q~~~~l~~ 263 (815)
..+++.|++|+.. .+..++|.|..|||||.+.. +.-+. . ...+|+|+.|+..+.+..+++.+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4689999999976 35689999999999996543 22222 1 35799999999998887776644
No 165
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.38 E-value=0.41 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=19.0
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMIL 240 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~ 240 (815)
.+.+|+.||+|+|||+.....+-..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999998665444443
No 166
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.29 E-value=0.62 Score=43.81 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=61.7
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
..+++||.++++.-+......|.. ++....+++.+...++...++....|..+|||+|.- + ...+. +..+++
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~-----~~G~d-~~~~~~ 101 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-L-----ARGID-VQQVSL 101 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-G-----TTTCC-CCSCSE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-h-----hcCCC-cccCCE
Confidence 367899999999999999998876 677888999999999999999999999999999932 1 11222 557777
Q ss_pred EEEec
Q 036378 319 VVVDE 323 (815)
Q Consensus 319 lViDE 323 (815)
||.-.
T Consensus 102 Vi~~~ 106 (165)
T 1fuk_A 102 VINYD 106 (165)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 77643
No 167
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.27 E-value=1.2 Score=47.28 Aligned_cols=34 Identities=6% Similarity=0.006 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHH----cCC---CEEEEcCCChhHHHHHHHH
Q 036378 203 RDGQLEAIKMVL----DKK---STMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 203 ~~~Q~~ai~~il----~g~---d~li~apTGsGKTl~~~lp 236 (815)
.|+|.+++..+. .|+ .+|+.||.|+|||......
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 477777766554 344 3799999999999765443
No 168
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.97 E-value=1.9 Score=48.20 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=17.3
Q ss_pred CCEEEEcCCChhHHHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l 238 (815)
+.+++.||+|+|||+.....+-
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999987654443
No 169
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.57 E-value=1.2 Score=48.02 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=24.0
Q ss_pred HHHHHHHcC---CCHHHHHHHHHHHHHcCcEEEE
Q 036378 647 IPTVANSIG---ATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 647 ~~~~a~~~g---~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
...+|..+| .+...+...+..|...|+|.-.
T Consensus 306 ~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 306 YTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 345666666 5668899999999999998876
No 170
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.55 E-value=1.5 Score=41.33 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.7
Q ss_pred CCCEEEEcCCChhHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~ 234 (815)
+..+++.||+|+|||....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3579999999999997643
No 171
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=89.48 E-value=0.76 Score=44.27 Aligned_cols=88 Identities=13% Similarity=0.023 Sum_probs=57.1
Q ss_pred ChhHHHHHHHHHHH---cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhh
Q 036378 226 GAGKSLCYQIPAMI---LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERF 301 (815)
Q Consensus 226 GsGKTl~~~lp~l~---~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L 301 (815)
.+.|-.. ++-++. .+.++||.++++.-+......|.. ++....+++.+...++...++.+..|.++|||+|. .+
T Consensus 29 ~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~ 106 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VA 106 (185)
T ss_dssp GGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---
T ss_pred cHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hh
Confidence 4566532 333332 367899999999999999998876 67788899999999999999999999999999992 21
Q ss_pred hchhhhhhhhhcCcccEEEE
Q 036378 302 LNADFLSIFTATSLISLVVV 321 (815)
Q Consensus 302 ~~~~~~~~~~~~~~i~~lVi 321 (815)
...+. +..+++||.
T Consensus 107 -----~~Gld-i~~~~~VI~ 120 (185)
T 2jgn_A 107 -----ARGLD-ISNVKHVIN 120 (185)
T ss_dssp ---------C-CCSBSEEEE
T ss_pred -----hcCCC-cccCCEEEE
Confidence 12222 567787776
No 172
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.21 E-value=2.2 Score=47.36 Aligned_cols=109 Identities=9% Similarity=0.043 Sum_probs=52.9
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---H-cCCcEEEEcccHHHHHHHHHhcCC---Cceeeee-ccCCChHHHHHH---HH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---I-LPGLTLVVCPLVALMIDQLRHLPP---VIHGGFL-SSSQRPEEVAET---IR 284 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~-~~~~~lVl~P~~~L~~q~~~~l~~---~~~~~~i-~~~~~~~~~~~~---~~ 284 (815)
|.-+++.|++|+|||...+-.+. . .+..+++++....- .|...++.. ++....+ ...+...++... +.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~ 281 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMG 281 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 56678999999999965433322 2 24578887743221 233333211 1111111 122333333322 22
Q ss_pred HHhcCCceEEEeCh-----hhhhchhhhhhhhhcCcccEEEEeccccccc
Q 036378 285 LIQVGAIKVLFVSP-----ERFLNADFLSIFTATSLISLVVVDEAHCVSE 329 (815)
Q Consensus 285 ~l~~g~~~Ili~TP-----e~L~~~~~~~~~~~~~~i~~lViDEaH~i~~ 329 (815)
.+.. ..+.+-.+ +.+.... ..... -.++++||||+.+.+..
T Consensus 282 ~l~~--~~l~i~d~~~~s~~~i~~~~-~~l~~-~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 282 SLSN--AGIYIDDTPSIRVSDIRAKC-RRLKQ-ESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHS--SCEEEECCTTCCHHHHHHHH-HHHHT-TTCCCEEEEECGGGSCC
T ss_pred HHhc--CCEEEECCCCCCHHHHHHHH-HHHHH-HcCCCEEEEccHHHhcc
Confidence 2332 34555433 3332211 11111 23689999999999863
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.99 E-value=1.8 Score=45.28 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=33.7
Q ss_pred HHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHH-HHHcCcEEE
Q 036378 627 KMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLN-LKMRGEITY 676 (815)
Q Consensus 627 ~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~-l~~~g~i~~ 676 (815)
..+..+++.+ .+. .+....+|..+|+++..+...|+. +...|++..
T Consensus 251 ~~i~~~~~~~---~g~-~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~ 297 (324)
T 1hqc_A 251 EILEVLILRF---GGG-PVGLATLATALSEDPGTLEEVHEPYLIRQGLLKR 297 (324)
T ss_dssp HHHHHHHHHS---CSS-CCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEE
T ss_pred HHHHHHHHHh---cCC-CchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhc
Confidence 4666666654 111 346889999999999999997776 888888864
No 174
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.96 E-value=1.4 Score=43.36 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.9
Q ss_pred CEEEEcCCChhHHHHH
Q 036378 218 STMLVLPTGAGKSLCY 233 (815)
Q Consensus 218 d~li~apTGsGKTl~~ 233 (815)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 175
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=88.96 E-value=0.96 Score=49.03 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=82.9
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
.++++||.++++.-+...++.|.+ +.....+++.+...++...++.+..|..+|||+|.- ....+. +..+++
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gid-ip~~~~ 337 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV------CARGID-VEQVSV 337 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG------GTSSCC-CTTEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc------cccCCC-ccCCCE
Confidence 467999999999999999999987 667888999999999999999999999999999942 122223 667888
Q ss_pred EEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcC
Q 036378 319 VVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEI 376 (815)
Q Consensus 319 lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~ 376 (815)
||.-..-.-.. +..-...|.....+.-|.......+++++..-.......+.+.+..
T Consensus 338 Vi~~~~p~~~~-~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~ 394 (412)
T 3fht_A 338 VINFDLPVDKD-GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 394 (412)
T ss_dssp EEESSCCBCSS-SSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCC-CCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCC
Confidence 77432211000 0011234444434433333333445555543334455566666544
No 176
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=88.90 E-value=0.33 Score=61.23 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=71.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHH---HHc------CCcEEEEcccHHHHHHHHHhcCCCceeeee
Q 036378 200 DSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA---MIL------PGLTLVVCPLVALMIDQLRHLPPVIHGGFL 270 (815)
Q Consensus 200 ~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~---l~~------~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i 270 (815)
..+++-|.+||..- +++++|.|.-|||||.+..-=+ +.. ...+|||++|++.+....+++...+.....
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~ 86 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELV 86 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999764 8899999999999998754222 222 237999999999999999888763321110
Q ss_pred ccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcC-cccEEEEeccc
Q 036378 271 SSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATS-LISLVVVDEAH 325 (815)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~-~i~~lViDEaH 325 (815)
. .........++..+ ..+-|+|-..+...+......... .-.+-|+||..
T Consensus 87 ~-~~~~~~~~~~~~~~----~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~ 137 (1232)
T 3u4q_A 87 Q-RPGSLHIRRQLSLL----NRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTE 137 (1232)
T ss_dssp H-STTCHHHHHHHHHT----TTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHH
T ss_pred c-CcchHHHHHHHhcc----CCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHH
Confidence 0 01111222222222 245678888877654443322110 12233677754
No 177
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=88.71 E-value=0.96 Score=48.60 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=81.6
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
.+.+||.++++.-+...++.|.. +.....+++.+...++...++.+..|..+|||+|.- ....+. +..+++|
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gid-ip~~~~V 315 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV------LARGID-IPTVSMV 315 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG------GSSSCC-CTTEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh------hhcCCC-cccCCEE
Confidence 67899999999999999999876 677888999999999999999999999999999942 122223 6678888
Q ss_pred EEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhc
Q 036378 320 VVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 320 ViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
|.-....+.. +..-...|.....+..|.......+++++..-.......+.+.++
T Consensus 316 i~~~~p~~~~-~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 316 VNYDLPTLAN-GQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp EESSCCBCTT-SSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEcCCCCCCc-CCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 8755443210 001123444443443333333334444443222333444444443
No 178
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.50 E-value=2.3 Score=46.88 Aligned_cols=122 Identities=13% Similarity=0.031 Sum_probs=82.4
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
....+||.++++.-+....+.|.+ ++....+++.+...++...++..+.|..+|||+|.- ....+. +.++++
T Consensus 299 ~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v------~~rGlD-i~~v~~ 371 (434)
T 2db3_A 299 QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV------ASRGLD-IKNIKH 371 (434)
T ss_dssp CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG------GTSSCC-CTTCCE
T ss_pred CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh------hhCCCC-cccCCE
Confidence 355699999999999999999876 677889999999999999999999999999999952 122223 667888
Q ss_pred EEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhc
Q 036378 319 VVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 319 lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
||.-..- .-...|.....+.-|......-+++++..-......++.+.+.
T Consensus 372 VI~~d~p-------~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 372 VINYDMP-------SKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp EEESSCC-------SSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHH
T ss_pred EEEECCC-------CCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHH
Confidence 7752221 1123444443444333333445556554334455556666553
No 179
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=88.41 E-value=1.6 Score=45.64 Aligned_cols=123 Identities=14% Similarity=0.056 Sum_probs=79.3
Q ss_pred HcCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCccc
Q 036378 239 ILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLIS 317 (815)
Q Consensus 239 ~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~ 317 (815)
..++.+||.++++.-+......|.. ++....+++.+...+....++....|..+|+|+|.- ....+. +..++
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v------a~~Gid-i~~v~ 98 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV------AARGLD-IPQVD 98 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST------TTCSTT-CCCCS
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech------hhcCcc-cccee
Confidence 3478999999999999999999976 778889999999999999999999999999999932 122222 56788
Q ss_pred EEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcC
Q 036378 318 LVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEI 376 (815)
Q Consensus 318 ~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~ 376 (815)
+||.=+.+ | + ...|.....+.-|.......+++++. ........+.+.++.
T Consensus 99 ~VI~~d~p----~--s-~~~y~Qr~GRagR~g~~G~~i~l~~~-~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 99 LVVHYRMP----D--R-AEAYQHRSGRTGRAGRGGRVVLLYGP-RERRDVEALERAVGR 149 (300)
T ss_dssp EEEESSCC----S--S-TTHHHHHHTCCC-----CEEEEEECS-STHHHHHHHHHHHTC
T ss_pred EEEEcCCC----C--C-HHHHHHHccCcCcCCCCceEEEEeCh-HHHHHHHHHHHHhCC
Confidence 77742222 1 1 23444443333333333334444443 234445555555543
No 180
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.94 E-value=1.5 Score=42.90 Aligned_cols=33 Identities=15% Similarity=0.004 Sum_probs=23.4
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~ 248 (815)
|.-+++.+|+|+|||......+...+..++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 667899999999999654433334566677665
No 181
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.90 E-value=2.7 Score=43.50 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=23.0
Q ss_pred cCCCEEEEcCCChhHHHHHHHHH-HH--c-CCcEEEEcc
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPA-MI--L-PGLTLVVCP 249 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~-l~--~-~~~~lVl~P 249 (815)
.|.-+++.||+|+|||......+ .. . +..++++.-
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 46778899999999996544332 22 2 336767653
No 182
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.69 E-value=3.8 Score=45.28 Aligned_cols=109 Identities=6% Similarity=-0.005 Sum_probs=52.9
Q ss_pred CCCEEEEcCCChhHHHHHH-HHH--HH-cCCcEEEEcccHHHHHHHHHhcCC---Cceeee-eccCCChHHHHHHH---H
Q 036378 216 KKSTMLVLPTGAGKSLCYQ-IPA--MI-LPGLTLVVCPLVALMIDQLRHLPP---VIHGGF-LSSSQRPEEVAETI---R 284 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~-lp~--l~-~~~~~lVl~P~~~L~~q~~~~l~~---~~~~~~-i~~~~~~~~~~~~~---~ 284 (815)
|.-+++.|++|+|||...+ +.. .. .+..+++++..-. ..|...++.. .+.... ....+...++.... .
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~ 278 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVAS 278 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHH
Confidence 4567899999999995433 322 22 2556887765321 2233332211 111111 12234444443322 2
Q ss_pred HHhcCCceEEEe-C----hhhhhchhhhhhhhhcCcccEEEEeccccccc
Q 036378 285 LIQVGAIKVLFV-S----PERFLNADFLSIFTATSLISLVVVDEAHCVSE 329 (815)
Q Consensus 285 ~l~~g~~~Ili~-T----Pe~L~~~~~~~~~~~~~~i~~lViDEaH~i~~ 329 (815)
.+.. ..+.+- + ++.+.... ..... -.++++||||..+.+..
T Consensus 279 ~l~~--~~l~i~d~~~~s~~~l~~~~-~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 279 RLSE--APIYIDDTPDLTLMEVRARA-RRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHT--SCEEEECCTTCBHHHHHHHH-HHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHhc--CCEEEECCCCCCHHHHHHHH-HHHHH-HcCCCEEEEcChhhcCC
Confidence 2332 245543 2 23332211 11111 23689999999999863
No 183
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=87.68 E-value=0.28 Score=47.77 Aligned_cols=35 Identities=20% Similarity=0.052 Sum_probs=24.9
Q ss_pred CCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEccc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPL 250 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~ 250 (815)
|+=.++.||.|+|||.-.+-.+ ...+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 5667889999999995433322 2346788888887
No 184
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=87.66 E-value=2.1 Score=45.25 Aligned_cols=123 Identities=16% Similarity=0.131 Sum_probs=81.5
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
.+..+||.++++.-+....+.|.+ +.....+++.+...++...++....|..+|+|+|.- ....+. +..+++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gid-~~~~~~ 309 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV------MSRGID-VNDLNC 309 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT------HHHHCC-CSCCSE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh------hhcCCC-cccCCE
Confidence 367899999999999999999886 667788999999999999999999999999999931 122233 667888
Q ss_pred EEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 319 VVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 319 lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
||.-..- .....|.....+..|...+...+++++ .........+.+.++..
T Consensus 310 Vi~~~~~-------~s~~~~~Q~~GR~~R~g~~g~~~~~~~-~~~~~~~~~i~~~~~~~ 360 (367)
T 1hv8_A 310 VINYHLP-------QNPESYMHRIGRTGRAGKKGKAISIIN-RREYKKLRYIERAMKLK 360 (367)
T ss_dssp EEESSCC-------SCHHHHHHHSTTTCCSSSCCEEEEEEC-TTSHHHHHHHHHHHTCC
T ss_pred EEEecCC-------CCHHHhhhcccccccCCCccEEEEEEc-HHHHHHHHHHHHHhCCC
Confidence 8764332 122344444343333222233334443 34445566666666543
No 185
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=87.62 E-value=2.7 Score=43.99 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=20.5
Q ss_pred CCEEEEcCCChhHHHHHHHHH-H--HcCCcEEEEc
Q 036378 217 KSTMLVLPTGAGKSLCYQIPA-M--ILPGLTLVVC 248 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~-l--~~~~~~lVl~ 248 (815)
+-+++++++|+|||......+ + ..++.++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 356789999999996544333 2 2355666554
No 186
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=87.59 E-value=1.3 Score=48.32 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=64.4
Q ss_pred ccccceEEEecchHHHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccc----cccccCCcc
Q 036378 420 SKHYYILQISGKHFETDLISRYLCD---NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG----MGLDKRDVG 492 (815)
Q Consensus 420 ~~~~~~ivf~~s~~~~e~l~~~L~~---~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~----~GID~p~v~ 492 (815)
..+..+++.+.++.-+.++++.++. .++.+..+||+.+..++....+.+..|+.+|+|+|.-.- .-++..+++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567788899999999999999988 688999999999999999999999999999999997422 124556788
Q ss_pred EEEE
Q 036378 493 AVIH 496 (815)
Q Consensus 493 ~VI~ 496 (815)
+||.
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 187
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.10 E-value=0.98 Score=45.10 Aligned_cols=36 Identities=19% Similarity=0.028 Sum_probs=27.2
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLV 251 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~ 251 (815)
|+=.++.|+.|+|||...+--+. ..+.+++|+.|.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 56668889999999976554443 3477899998875
No 188
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.86 E-value=1.8 Score=45.89 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=29.8
Q ss_pred cccEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHH
Q 036378 315 LISLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVM 371 (815)
Q Consensus 315 ~i~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~ 371 (815)
..+++++|.+.... ....+...+..+.+...+..+++.+.+|...+....+.
T Consensus 211 ~~d~vliDtaG~~~-----~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~ 262 (328)
T 3e70_C 211 GIDVVLIDTAGRSE-----TNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQAR 262 (328)
T ss_dssp TCSEEEEEECCSCC-----TTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHH
T ss_pred cchhhHHhhccchh-----HHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHH
Confidence 45678888876542 11222222233444555667788888888766555443
No 189
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=86.59 E-value=2.5 Score=45.81 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=82.7
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
..+++||.++++.-+....+.|.. ++....+++.+...++...++.+..|..+|||+|.- ....+. +..+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gid-i~~v~~ 347 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV------WARGLD-VPQVSL 347 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG------GSSSCC-CTTEEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh------hhCcCC-cccCCE
Confidence 367899999999999999999876 677888999999999999999999999999999942 122223 567788
Q ss_pred EEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 319 VVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 319 lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
||.-..- .....|.....+..|.......+++++- .......++.+.+...
T Consensus 348 Vi~~~~p-------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~ 398 (410)
T 2j0s_A 348 IINYDLP-------NNRELYIHRIGRSGRYGRKGVAINFVKN-DDIRILRDIEQYYSTQ 398 (410)
T ss_dssp EEESSCC-------SSHHHHHHHHTTSSGGGCCEEEEEEEEG-GGHHHHHHHHHHTTCC
T ss_pred EEEECCC-------CCHHHHHHhcccccCCCCceEEEEEecH-HHHHHHHHHHHHhCCC
Confidence 7753221 2233455544544444333334444443 3445556666666543
No 190
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=86.58 E-value=2.4 Score=44.26 Aligned_cols=114 Identities=12% Similarity=0.014 Sum_probs=74.7
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
.++.+||.++++.-+....+.+.. ...+++.+...++...++....|..+|+|+|.- ....+. +..+++|
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gid-~~~~~~V 288 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFDN---AIELRGDLPQSVRNRNIDAFREGEYDMLITTDV------ASRGLD-IPLVEKV 288 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCTT---EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHH------HHTTCC-CCCBSEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHhhh---hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCc------cccCCC-ccCCCEE
Confidence 367899999999999988888873 567888999999999999999999999999941 222233 6678888
Q ss_pred EEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHH
Q 036378 320 VVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMS 372 (815)
Q Consensus 320 ViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~ 372 (815)
|.-... | + ...|.....+..|.......+++++ ......+.+.+
T Consensus 289 i~~~~~----~--s-~~~~~Q~~GR~gR~g~~g~~~~~~~--~~~~~~~~i~~ 332 (337)
T 2z0m_A 289 INFDAP----Q--D-LRTYIHRIGRTGRMGRKGEAITFIL--NEYWLEKEVKK 332 (337)
T ss_dssp EESSCC----S--S-HHHHHHHHTTBCGGGCCEEEEEEES--SCHHHHHHHC-
T ss_pred EEecCC----C--C-HHHhhHhcCccccCCCCceEEEEEe--CcHHHHHHHHH
Confidence 764332 1 1 2334444344444433334455555 34444444443
No 191
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.36 E-value=3.9 Score=42.78 Aligned_cols=18 Identities=6% Similarity=-0.311 Sum_probs=14.7
Q ss_pred CEEEEcCCChhHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 218 d~li~apTGsGKTl~~~l 235 (815)
..|+.||.|+|||.+...
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 20 SILINGEDLSYPREVSLE 37 (305)
T ss_dssp EEEEECSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688999999999975443
No 192
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=86.04 E-value=5.4 Score=40.52 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=69.3
Q ss_pred HHHHHHHHhhcCCCCCCCeeecchhHHHHHhC--CCHHHHHHHHHHHHhcCcccEEeccccccceEEEecCCchhhhhhh
Q 036378 548 INKFLCQVFTNGMNSHGKLCSLVKESASRKFD--IKEEVMLTLLTCLELGEIQYLQLLPELKVTCTLNFHKTTPTLLADK 625 (815)
Q Consensus 548 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~le~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (815)
+...|..|....... ..+..+.+...+. +++.....+|..|. ..|.|...... +....-........
T Consensus 71 l~~~L~~~H~~~P~~----~G~~~~~L~~~~~~~~~~~l~~~ll~~l~--~~g~l~~~~~~-----v~l~~h~~~~~~~~ 139 (258)
T 1lva_A 71 VTRALEEFHSRYPLR----PGLAREELRSRYFSRLPARVYQALLEEWS--REGRLQLAANT-----VALAGFTPSFSETQ 139 (258)
T ss_dssp HHHHHHHHHHHCTTS----SCEEHHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEETTE-----EEETTCCCCCCHHH
T ss_pred HHHHHHHHHHhCCCc----cCCCHHHHHHhccccCCHHHHHHHHHHHH--HCCCEEecCCE-----EeCCCCccCCCHHH
Confidence 445555554443221 2356777777753 67777788888877 34555543332 11111011112223
Q ss_pred HHHHHHHHhhCCcCCceeee-CHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecC
Q 036378 626 DKMVATILKKSETKQGQYVF-DIPTVANSIGATTIDVSNQLLNLKMRGEITYELKD 680 (815)
Q Consensus 626 ~~~~~~~lr~~~~~~~~~~~-~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~ 680 (815)
......++... ..+-|.. .+.+++..+|++..+++..|++|...|.+.-...+
T Consensus 140 ~~~~~~i~~~~--~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~ 193 (258)
T 1lva_A 140 KKLLKDLEDKY--RVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDE 193 (258)
T ss_dssp HHHHHHHHHHH--HHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSS
T ss_pred HHHHHHHHHHH--HHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 33444443332 1122333 57889999999999999999999999987655444
No 193
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.85 E-value=2.1 Score=46.37 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=22.5
Q ss_pred HHH-HHcC---CCHHHHHHHHHHHHHcCcEEEE
Q 036378 649 TVA-NSIG---ATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 649 ~~a-~~~g---~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.++ ..+| ++...+...|..|...|+|.-.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 339 DASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 355 6666 4568888999999999998776
No 194
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=85.73 E-value=2 Score=41.76 Aligned_cols=35 Identities=17% Similarity=-0.023 Sum_probs=26.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEccc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPL 250 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~ 250 (815)
...+++..+.|.|||.+.+-.++ -.+.+|+|+.=.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFI 65 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 34788999999999987765544 458888888543
No 195
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.54 E-value=4.7 Score=42.52 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.1
Q ss_pred CCEEEEcCCChhHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~ 234 (815)
.++++.||+|+|||....
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999997653
No 196
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.33 E-value=6.6 Score=40.75 Aligned_cols=33 Identities=24% Similarity=0.115 Sum_probs=21.1
Q ss_pred CCCEEEEcCCChhHHHHHHHHH-H--HcCCcEEEEc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA-M--ILPGLTLVVC 248 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~-l--~~~~~~lVl~ 248 (815)
++-+.++++.|+|||......+ + ..++.++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4566788999999996543332 2 2356666654
No 197
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=85.27 E-value=3.6 Score=48.04 Aligned_cols=81 Identities=22% Similarity=0.122 Sum_probs=67.6
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
.+.++||.++++.-+....+.|.. +++...+++.+...++...++.+..|.++|+|+|- .....+. +..+++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlD-ip~v~l 516 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLD-IPEVSL 516 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCC-CTTEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcc-cCCCCE
Confidence 467999999999999999999986 67778889999999999999999999999999984 1122233 668999
Q ss_pred EEEeccccc
Q 036378 319 VVVDEAHCV 327 (815)
Q Consensus 319 lViDEaH~i 327 (815)
||+-+++..
T Consensus 517 Vi~~d~d~~ 525 (661)
T 2d7d_A 517 VAILDADKE 525 (661)
T ss_dssp EEETTTTCC
T ss_pred EEEeCcccc
Confidence 999998765
No 198
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=84.94 E-value=2.1 Score=46.26 Aligned_cols=122 Identities=9% Similarity=0.031 Sum_probs=79.8
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
.+++||.++++.-+....+.|.. +.....+++.+...++...++.+..|..+|||+|.- ....+. +..+++|
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~------~~~Gid-ip~~~~V 330 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL------LTRGID-IQAVNVV 330 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC------SSSSCC-CTTEEEE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc------cccCCC-ccCCCEE
Confidence 57899999999999999999887 667788999999999999999999999999999931 122222 5577777
Q ss_pred EEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 320 VVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 320 ViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
|.-..- | -...|.....+..|.......+++++.. .......+.+.++..
T Consensus 331 i~~~~p----~---s~~~~~Qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~ 380 (400)
T 1s2m_A 331 INFDFP----K---TAETYLHRIGRSGRFGHLGLAINLINWN-DRFNLYKIEQELGTE 380 (400)
T ss_dssp EESSCC----S---SHHHHHHHHCBSSCTTCCEEEEEEECGG-GHHHHHHHHHHHTCC
T ss_pred EEeCCC----C---CHHHHHHhcchhcCCCCCceEEEEeccc-hHHHHHHHHHHhCCC
Confidence 753221 1 1233444434333332233344444432 334455566666544
No 199
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=84.84 E-value=5.2 Score=46.69 Aligned_cols=81 Identities=19% Similarity=0.102 Sum_probs=66.8
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
.+.++||.++++.-+....+.|.. +++...+++.+...++...++.+..|.++|+|+|- .+ ...+. +..+++
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-~l-----~~GlD-ip~v~l 510 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-LL-----REGLD-IPEVSL 510 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-CC-----CTTCC-CTTEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-hh-----hcCcc-CCCCCE
Confidence 478999999999999999998886 67778889999999999999999999999999982 11 22223 668899
Q ss_pred EEEeccccc
Q 036378 319 VVVDEAHCV 327 (815)
Q Consensus 319 lViDEaH~i 327 (815)
||+=+++..
T Consensus 511 VI~~d~d~~ 519 (664)
T 1c4o_A 511 VAILDADKE 519 (664)
T ss_dssp EEETTTTSC
T ss_pred EEEeCCccc
Confidence 999888754
No 200
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.77 E-value=9.7 Score=37.10 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=23.0
Q ss_pred cCCCEEEEcCCChhHHHHH-HHHHH--HcCCcEEEEc
Q 036378 215 DKKSTMLVLPTGAGKSLCY-QIPAM--ILPGLTLVVC 248 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~-~lp~l--~~~~~~lVl~ 248 (815)
.|.-+++.||+|+|||... ++... ..++.++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3677889999999999543 33322 2356777765
No 201
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=84.49 E-value=13 Score=38.75 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=16.0
Q ss_pred CCCEEEEcCCChhHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~ 234 (815)
++.+++.||.|+|||....
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 6788999999999997543
No 202
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=84.25 E-value=2 Score=53.24 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=66.0
Q ss_pred ccccceEEEecchHHHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccccc----cccccCCcc
Q 036378 420 SKHYYILQISGKHFETDLISRYLCD---NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAFG----MGLDKRDVG 492 (815)
Q Consensus 420 ~~~~~~ivf~~s~~~~e~l~~~L~~---~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~~----~GID~p~v~ 492 (815)
..+..+++.+.++.-+.++++.+.. .++.+..+||+++..+|....+.+.+|..+|+|+|.-.- .-++..+++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 4567789999999999999999998 578999999999999999999999999999999996422 115667899
Q ss_pred EEEEeC
Q 036378 493 AVIHYS 498 (815)
Q Consensus 493 ~VI~~d 498 (815)
+||.-.
T Consensus 199 ~lViDE 204 (1104)
T 4ddu_A 199 FVFVDD 204 (1104)
T ss_dssp EEEESC
T ss_pred EEEEeC
Confidence 988633
No 203
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=84.06 E-value=0.9 Score=37.37 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=35.8
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCY 685 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~ 685 (815)
....+||..+|+++..|++.|+.|+..|+|....+.|-.=+
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~ 71 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWF 71 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCcce
Confidence 57889999999999999999999999999999876654433
No 204
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.58 E-value=4.3 Score=46.68 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=62.4
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
+..+||.++++.-+.+....|.. ++....+++++...++...++....|..+|||+|. .+...+. +.++++|
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~------a~~~GID-~p~V~~V 339 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV------AFGMGID-KPDVRFV 339 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT------TSCTTCC-CSCEEEE
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhcCCC-cccccEE
Confidence 67899999999999999999986 67888999999999999999999999999999993 2222333 6678888
Q ss_pred EE
Q 036378 320 VV 321 (815)
Q Consensus 320 Vi 321 (815)
|.
T Consensus 340 I~ 341 (591)
T 2v1x_A 340 IH 341 (591)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 205
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.56 E-value=2.1 Score=46.41 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=61.2
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
++++||.++++.-+....+.|.+ ++....+++.+...++...++.+..|..+|||+|.- ....+. +..+++|
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~~Gid-ip~v~~V 348 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV------AARGLD-ISNVKHV 348 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHH------HHTTSC-CCCEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECCh------hhcCCC-cccCCEE
Confidence 57899999999999999999976 677888999999999999999999999999999951 122233 6678877
Q ss_pred EE
Q 036378 320 VV 321 (815)
Q Consensus 320 Vi 321 (815)
|.
T Consensus 349 i~ 350 (417)
T 2i4i_A 349 IN 350 (417)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 206
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=82.80 E-value=5 Score=41.72 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=15.6
Q ss_pred CCCEEEEcCCChhHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~l 235 (815)
++.+++++++|+|||.....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 55678899999999965443
No 207
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.76 E-value=4.6 Score=42.99 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.0
Q ss_pred CEEEEcCCChhHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp 236 (815)
.+++.||.|+|||......
T Consensus 40 ~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999765433
No 208
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=82.68 E-value=4.4 Score=42.14 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.7
Q ss_pred CEEEEcCCChhHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 218 d~li~apTGsGKTl~~~ 234 (815)
.+++.||+|+|||....
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999997654
No 209
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=83.32 E-value=0.25 Score=46.91 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=57.3
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
++++||.++++.-+......|.. ++....+++.+...++...++.+..|.++|||+|. .+ ...+. +..+++|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gid-~~~~~~V 102 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VA-----ARGID-IPDVSHV 102 (170)
Confidence 46789999999999998888877 56677888888888888899999999999999993 22 11222 4566666
Q ss_pred EEe
Q 036378 320 VVD 322 (815)
Q Consensus 320 ViD 322 (815)
|.-
T Consensus 103 i~~ 105 (170)
T 2yjt_D 103 FNF 105 (170)
Confidence 653
No 210
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=82.55 E-value=2.4 Score=48.68 Aligned_cols=119 Identities=8% Similarity=-0.009 Sum_probs=78.6
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC----CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcc
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP----VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLI 316 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~----~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i 316 (815)
+..+||.++++.-+...+..|.+ .+....+++.+...++...++.+..|..+|||+|.- ....+. +..+
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~------~~~GiD-ip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMD-FPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCC-CTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch------hhcCCC-cccC
Confidence 67899999999999988888865 567788999999999999999999999999999942 222233 6678
Q ss_pred cEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHh
Q 036378 317 SLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSAL 374 (815)
Q Consensus 317 ~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l 374 (815)
++||.-..-. + ...|.....+.-|.......+++++- -.......+.+..
T Consensus 361 ~~VI~~~~p~------s-~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 361 HEVLQIGVPS------E-LANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAK 410 (579)
T ss_dssp CEEEEESCCS------S-TTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHH
T ss_pred CEEEEcCCCC------C-HHHhhhhccccccCCCCceEEEEEcc-cHHHHHHHHHHHh
Confidence 8888654332 2 22344443444433333344555543 2333344444443
No 211
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=82.47 E-value=6.1 Score=44.10 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=20.8
Q ss_pred CCCEEEEcCCChhHHHHHHHHH-HH--cCCcEEEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA-MI--LPGLTLVV 247 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~-l~--~~~~~lVl 247 (815)
|.-+.++|++|+|||......+ +. .++.+++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 3457799999999997544332 22 25666665
No 212
>2p4r_T E3 ubiquitin-protein ligase itchy homolog; SH3 domain peptide ligand complex; 2.00A {Rattus norvegicus}
Probab=82.35 E-value=1 Score=27.81 Aligned_cols=18 Identities=39% Similarity=0.905 Sum_probs=14.7
Q ss_pred ccCCCCCCCCCCCCCCCC
Q 036378 13 SATPPRCQNPPSPPPLQT 30 (815)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ 30 (815)
-.+|||++-|||+.+..+
T Consensus 5 ~~rP~rPsrPpP~tp~r~ 22 (26)
T 2p4r_T 5 PSRPPRPSRPPPPTPRRP 22 (26)
T ss_pred cCCCCCCCCCCCCCCCCc
Confidence 468999999998888665
No 213
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=82.27 E-value=3.5 Score=51.41 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=64.9
Q ss_pred ccccceEEEecchHHHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccc-cccccccCCccEE
Q 036378 420 SKHYYILQISGKHFETDLISRYLCD----NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA-FGMGLDKRDVGAV 494 (815)
Q Consensus 420 ~~~~~~ivf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~-~~~GID~p~v~~V 494 (815)
..+.++++.+.++.-+++.++.+.+ .++.+..+++..+..++..+++.+..|+.+|+|+|.. +...+.+.++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 3566888999999988888877764 4688999999999999999999999999999999965 4556888888887
Q ss_pred EE
Q 036378 495 IH 496 (815)
Q Consensus 495 I~ 496 (815)
|.
T Consensus 730 Ii 731 (1151)
T 2eyq_A 730 IV 731 (1151)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 214
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=82.26 E-value=1.7 Score=47.10 Aligned_cols=121 Identities=14% Similarity=0.068 Sum_probs=71.4
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
.+++||.++++.-+....+.|.+ .+....+++.+...++...++.+..|..+|||+|.- ....+. +..+++|
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gid-ip~v~~V 352 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL------LARGID-VQQVSLV 352 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS------CC--CC-GGGCSCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc------cccCCC-ccCCCEE
Confidence 56899999999999999999987 677788899999999999999999999999999942 122222 5567777
Q ss_pred EEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcC
Q 036378 320 VVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEI 376 (815)
Q Consensus 320 ViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~ 376 (815)
|.-... .-...|.....+.-|.......+++++.. .......+.+.+..
T Consensus 353 i~~~~p-------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~ 401 (414)
T 3eiq_A 353 INYDLP-------TNRENYIHRIGRGGRFGRKGVAINMVTEE-DKRTLRDIETFYNT 401 (414)
T ss_dssp EESSCC-------SSTHHHHHHSCCC-------CEEEEECST-HHHHHHHHHHHTTC
T ss_pred EEeCCC-------CCHHHhhhhcCcccCCCCCceEEEEEcHH-HHHHHHHHHHHHcC
Confidence 653322 12234444434444433334445555432 33444555555544
No 215
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=82.25 E-value=6 Score=33.90 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=39.2
Q ss_pred HHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 629 VATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 629 ~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
...|+... ..+.....+.++|..+|+++..|++.|..|...|+|....
T Consensus 30 ~~~I~~~l--~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEEL--DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHTTSS--BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhhh--cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 56666322 2355455899999999999999999999999999998887
No 216
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=81.97 E-value=13 Score=31.82 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=35.8
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI 687 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~ 687 (815)
..+.++|..+|++++.|.+.|..|...|+|..........|.+
T Consensus 35 ~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l 77 (114)
T 2oqg_A 35 QSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRA 77 (114)
T ss_dssp BCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEe
Confidence 4688899999999999999999999999998775544454544
No 217
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=81.84 E-value=2.5 Score=38.48 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=33.0
Q ss_pred ceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 641 GQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 641 ~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
+..-.....+|..||++..+|.+.|..|.++|+|...
T Consensus 48 g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 48 GSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp TCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4444578899999999999999999999999999985
No 218
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=81.72 E-value=11 Score=36.99 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=18.2
Q ss_pred cCCCEEEEcCCChhHHHHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~l 238 (815)
.|.-+++.+|+|+|||......+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 367789999999999976544443
No 219
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=81.43 E-value=2.8 Score=47.79 Aligned_cols=120 Identities=8% Similarity=0.005 Sum_probs=78.2
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC----CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcc
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP----VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLI 316 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~----~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i 316 (815)
+..+||.++++.-+......|.+ .+....+++.+...++...++.+..|..+|||+|.- ....+. +..+
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~~GiD-ip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMD-FPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCC-CTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch------hhcCCC-cccC
Confidence 67899999999999888888765 567788999999999999999999999999999942 122223 6678
Q ss_pred cEEEEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhc
Q 036378 317 SLVVVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALE 375 (815)
Q Consensus 317 ~~lViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~ 375 (815)
++||.-..-. +. ..|.....+.-|.......+++++. -.......+.+...
T Consensus 412 ~~VI~~~~p~------s~-~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 412 HEVLQIGVPS------EL-ANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKN 462 (563)
T ss_dssp CEEEEESCCS------ST-THHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHC
T ss_pred CEEEEECCCC------ch-hhhhhhcCccccCCCCceEEEEEch-hHHHHHHHHHHHhC
Confidence 8887654321 22 2344443443333323334555543 23334444444443
No 220
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=81.40 E-value=6.4 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.244 Sum_probs=17.3
Q ss_pred CCCEEEEcCCChhHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp 236 (815)
..++++.|.||||||.+....
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tl 234 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAM 234 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHH
Confidence 568999999999999875433
No 221
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=81.32 E-value=3 Score=37.45 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=37.6
Q ss_pred HHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 628 MVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 628 ~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
++..+.+.. ..+.......++|..+|++...|.+.|++|+++|+|...
T Consensus 37 vll~L~~~~--~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 37 LLLHMQSFF--EEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp HHHHHHHHH--TTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEEC
T ss_pred HHHHHHHHH--hcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 555555542 123223588999999999999999999999999999886
No 222
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.07 E-value=11 Score=38.29 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=17.1
Q ss_pred HcCCCEEEEcCCChhHHHHHH
Q 036378 214 LDKKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 214 l~g~d~li~apTGsGKTl~~~ 234 (815)
..|.-+++.||.|+|||....
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 357888999999999996543
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=81.02 E-value=2.1 Score=50.88 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=15.7
Q ss_pred CEEEEcCCChhHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp 236 (815)
.+++.||||+|||......
T Consensus 523 ~~Ll~Gp~GtGKT~lA~al 541 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARAL 541 (758)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4999999999999866544
No 224
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.95 E-value=3.6 Score=43.92 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=24.0
Q ss_pred CCCEEEEcCCChhHHHHHH-HHH--HHcCCcEEEEccc
Q 036378 216 KKSTMLVLPTGAGKSLCYQ-IPA--MILPGLTLVVCPL 250 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~-lp~--l~~~~~~lVl~P~ 250 (815)
|+-+++.+|.|+|||...+ +.+ ...++.++++.-.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 5678999999999996533 332 2346677777644
No 225
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=80.89 E-value=3.3 Score=49.23 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=16.5
Q ss_pred CCCEEEEcCCChhHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~l 235 (815)
.+.+|+.||.|+|||+..-.
T Consensus 238 p~GILL~GPPGTGKT~LAra 257 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999986543
No 226
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.53 E-value=5.8 Score=41.07 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.5
Q ss_pred CEEEEcCCChhHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 218 d~li~apTGsGKTl~~~ 234 (815)
.+++.||.|+|||....
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999997543
No 227
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=80.26 E-value=3.3 Score=33.53 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=32.7
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCc
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDP 681 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~ 681 (815)
+...++|..+|+++..|.+.|..|+..|+|.-..+.+
T Consensus 32 ~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 32 TTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp EEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 3578899999999999999999999999998775544
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.21 E-value=2.3 Score=46.73 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=41.7
Q ss_pred cccccccccccHHHHHHHhhhhhhHHH-HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHHHHcC
Q 036378 163 YRRTASELELVEEAVRAVRDEASDENL-GRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPAMILP 241 (815)
Q Consensus 163 ~~~~~~~l~l~~~l~~~l~~~~~~~~l-~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~l~~~ 241 (815)
...+|++++-.+++.+.|.+...-.-. .+.++. +|.. -.+.+|+.||.|+|||+..-..+-..+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~-~g~~--------------~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKD-MGIR--------------APKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHH-HCCC--------------CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHh-CCCC--------------CCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 345899999999888888874211100 111111 2322 146899999999999986544444444
Q ss_pred CcEEEE
Q 036378 242 GLTLVV 247 (815)
Q Consensus 242 ~~~lVl 247 (815)
...+.+
T Consensus 241 ~~f~~v 246 (434)
T 4b4t_M 241 ATFLKL 246 (434)
T ss_dssp CEEEEE
T ss_pred CCEEEE
Confidence 444433
No 229
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.80 E-value=7.3 Score=50.81 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=31.9
Q ss_pred HHHHHc------CCCEEEEcCCChhHHHHHHHH---HHHcCCcEEEEcccHHH
Q 036378 210 IKMVLD------KKSTMLVLPTGAGKSLCYQIP---AMILPGLTLVVCPLVAL 253 (815)
Q Consensus 210 i~~il~------g~d~li~apTGsGKTl~~~lp---~l~~~~~~lVl~P~~~L 253 (815)
+..++. ++.+++.+|+|+|||...... +...+..++++...-++
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 666666 779999999999999654322 33457888888866443
No 230
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.37 E-value=4.7 Score=47.89 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=18.7
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHcCC
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMILPG 242 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~~~ 242 (815)
+.+|+.||.|+|||+..-..+-..+.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCC
Confidence 46899999999999865444443333
No 231
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.69 E-value=11 Score=39.66 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.5
Q ss_pred CEEEEcCCChhHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp 236 (815)
.+++.||.|+|||.....-
T Consensus 38 ~~ll~Gp~G~GKTtl~~~l 56 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMAL 56 (354)
T ss_dssp CEEEECSTTSSHHHHHHTH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4999999999999765443
No 232
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=78.53 E-value=3.8 Score=33.57 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=33.2
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCc
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDP 681 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~ 681 (815)
+...++|..+|+++..|.+.|..|+..|+|....+.+
T Consensus 28 ~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~ 64 (81)
T 1qbj_A 28 TTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 64 (81)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSS
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 4678999999999999999999999999998876555
No 233
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=78.40 E-value=3.6 Score=49.71 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=16.6
Q ss_pred CCCEEEEcCCChhHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp 236 (815)
..+++++||+|+|||......
T Consensus 191 ~~~vlL~G~pG~GKT~la~~l 211 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGL 211 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHH
Confidence 347999999999999765443
No 234
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=78.18 E-value=3.6 Score=33.04 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=33.2
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCce
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPA 682 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~ 682 (815)
+-...||..+|+++.+|.++|..|+.+|.+.-..+.|-
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP 67 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPP 67 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSC
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCC
Confidence 34678999999999999999999999999988866553
No 235
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=77.82 E-value=14 Score=36.92 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=43.6
Q ss_pred cccceEEEecchHHHHHHHHHHhhC----CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccc
Q 036378 421 KHYYILQISGKHFETDLISRYLCDN----SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~ 481 (815)
...++++.+.++.-+.++++.++.. ++.+..++|+.+..++...+ .+..+|+|+|.-
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~ 170 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPG 170 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHH
Confidence 4456888999999988888777653 88999999999876554333 356889999963
No 236
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=77.80 E-value=3.8 Score=42.96 Aligned_cols=38 Identities=16% Similarity=-0.043 Sum_probs=25.5
Q ss_pred CEEEEcCCChhHHHHHHHHH---HHc--CCcEEEEcccHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA---MIL--PGLTLVVCPLVALMI 255 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~---l~~--~~~~lVl~P~~~L~~ 255 (815)
-+++.+|.|+|||...+-.+ ... ++.+++|....++-.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 57899999999996433222 222 677888877655543
No 237
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=77.76 E-value=4.9 Score=43.16 Aligned_cols=36 Identities=14% Similarity=0.008 Sum_probs=24.2
Q ss_pred CCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEcccH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLV 251 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~ 251 (815)
|.-+++.+++|+|||...+-.+ ...+..++++..-.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4567899999999996443222 23466777776543
No 238
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=77.56 E-value=12 Score=36.39 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=51.5
Q ss_pred ccceEEEecchHHHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccc------ccccccCC
Q 036378 422 HYYILQISGKHFETDLISRYLCDN-----SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF------GMGLDKRD 490 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~-----g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~------~~GID~p~ 490 (815)
..++++.+.++.-++++++.++.. ++.+..++|+.+..++.. .+..+..+|+|+|.-. ...++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 347888899999999888877653 789999999998766543 3445778999999631 12345555
Q ss_pred ccEEEE
Q 036378 491 VGAVIH 496 (815)
Q Consensus 491 v~~VI~ 496 (815)
+++||.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666553
No 239
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=77.54 E-value=27 Score=38.13 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 036378 647 IPTVANSIGATTIDVSNQLLNLKM 670 (815)
Q Consensus 647 ~~~~a~~~g~~~~~v~~~l~~l~~ 670 (815)
...+|.+.|.+..+|.+.|++..+
T Consensus 385 ~~ria~gsg~~~~~v~~ll~~~~~ 408 (425)
T 2ffh_A 385 RKRIAKGSGTSVQEVNRFIKAFEE 408 (425)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHHH
Confidence 457999999999999998887654
No 240
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=77.46 E-value=3.4 Score=49.44 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=17.9
Q ss_pred CCCEEEEcCCChhHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~ 237 (815)
++.++++||+|+|||......+
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 6789999999999998655443
No 241
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=77.17 E-value=7.6 Score=43.43 Aligned_cols=106 Identities=11% Similarity=-0.008 Sum_probs=73.7
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
++..+|+...+.-+....+.|.. +.....+++.+...++...++...+|+++|||+|+..+..- +. +..+++|
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~G-----iD-ip~v~~v 420 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTG-----IS-VKNLHHV 420 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHS-----CC-CCSEEEE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcc-----cc-cccCcEE
Confidence 56666666667777778888876 45778889999999999999999999999999997766432 22 6689999
Q ss_pred EEeccccccccccCchHHHHHHHHHHHHHhcccceeEeee
Q 036378 320 VVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMT 359 (815)
Q Consensus 320 ViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lS 359 (815)
|+..+. | +. ..|.....+.-|.......+++.+
T Consensus 421 i~~~~~----~--s~-~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 421 VLAHGV----K--SK-IIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EESSCC----C--SC-CHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEeCCC----C--CH-HHHHHHHhcccccCCCCceEEEEE
Confidence 998776 2 22 234444466655544332344333
No 242
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=76.74 E-value=4.8 Score=47.82 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=16.2
Q ss_pred CCCEEEEcCCChhHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~ 234 (815)
+.+++++||+|+|||....
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 5689999999999997654
No 243
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=76.05 E-value=11 Score=40.41 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=20.8
Q ss_pred CCCEEEEcCCChhHHHHHHHHH-HH--cCCcEEEEc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA-MI--LPGLTLVVC 248 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~-l~--~~~~~lVl~ 248 (815)
|.-+.++||+|+|||...-..+ +. .++.+++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 4457799999999997543332 22 255555543
No 244
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=75.89 E-value=8.9 Score=33.02 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=35.9
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI 687 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~ 687 (815)
..+.++|..+|++++.|.+.|..|...|+|..........|.+
T Consensus 39 ~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l 81 (108)
T 2kko_A 39 RAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRI 81 (108)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 3678899999999999999999999999998875555455544
No 245
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=75.08 E-value=7 Score=33.94 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=42.7
Q ss_pred eCHHHHHHHc-CCCHHHHHHHHHHHHHcCcEEEEecCceEEEEEeCCCchhhhhHHHHHHH
Q 036378 645 FDIPTVANSI-GATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSDFCALSAHLTKW 704 (815)
Q Consensus 645 ~~~~~~a~~~-g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (815)
..+.+++..+ |++.+.+.+.|+.|++.|+|.-... +...|.+...-..+......+.+|
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~~~l~~l~~w 102 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVRNSLMPLLQY 102 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHHHHHHHHHHH
Confidence 3478899999 9999999999999999999987766 666665543322333334444444
No 246
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=75.04 E-value=8.8 Score=39.92 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=20.9
Q ss_pred CCCEEEEcCCChhHHHHHHHHH-HH--cCCcEEEEc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA-MI--LPGLTLVVC 248 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~-l~--~~~~~lVl~ 248 (815)
|.-+.++||+|+|||...-..+ +. .++.+++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4567799999999997543332 22 255555543
No 247
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=74.84 E-value=7.2 Score=41.60 Aligned_cols=32 Identities=31% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl 247 (815)
+..+++.||+|+|||.+....+-..+...+.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 56899999999999987765554444433333
No 248
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=74.66 E-value=2.1 Score=47.22 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=31.5
Q ss_pred CCCEEEEcCCChhHHHHH--HHHHH-HcCCcEEEEcccHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCY--QIPAM-ILPGLTLVVCPLVALMI 255 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~--~lp~l-~~~~~~lVl~P~~~L~~ 255 (815)
..+++++|+||||||... +++-+ ..+..++|+=|--++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 579999999999999875 44433 45778889999888864
No 249
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=74.60 E-value=7.4 Score=40.58 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=20.4
Q ss_pred CCCEEEEcCCChhHHHHHHHHH-HHc--CCcEEEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA-MIL--PGLTLVV 247 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~-l~~--~~~~lVl 247 (815)
|.-+.++||+|+|||......+ +.. ++.+++.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4567789999999997544333 222 4555554
No 250
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=74.60 E-value=15 Score=31.45 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=35.6
Q ss_pred CHHHHHHHc-CCCHHHHHHHHHHHHHcCcEEEEe--c-CceEEEEEeCC
Q 036378 646 DIPTVANSI-GATTIDVSNQLLNLKMRGEITYEL--K-DPAYCYTIVEV 690 (815)
Q Consensus 646 ~~~~~a~~~-g~~~~~v~~~l~~l~~~g~i~~~~--~-~~~~~~~~~~~ 690 (815)
...++|..+ |++++.|...|..|++.|+|.-.. . .....|.+...
T Consensus 29 ~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~ 77 (107)
T 2hzt_A 29 RTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEY 77 (107)
T ss_dssp CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECcc
Confidence 578899999 999999999999999999998762 2 34445555444
No 251
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=74.37 E-value=6.2 Score=34.63 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=37.9
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEEeC
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVE 689 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~~~ 689 (815)
..+.++|..+|++.+.|.+.|+.|...|+|..........|.+..
T Consensus 32 ~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~ 76 (118)
T 3f6o_A 32 ATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEK 76 (118)
T ss_dssp EEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECS
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECH
Confidence 367889999999999999999999999999988666666665543
No 252
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=74.28 E-value=11 Score=32.32 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=36.1
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI 687 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~ 687 (815)
..+.++|..+|++.+.|.+.|+.|...|+|..........|.+
T Consensus 40 ~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l 82 (106)
T 1r1u_A 40 ASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSL 82 (106)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 3678899999999999999999999999999886555555544
No 253
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=73.97 E-value=2.8 Score=41.11 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHH
Q 036378 199 YDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 199 ~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~l 235 (815)
+...+..|..++..+..|.-+.++||.|+|||...-+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~ 41 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMA 41 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHH
Confidence 3444567888888888899999999999999975443
No 254
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=73.74 E-value=11 Score=31.24 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=36.1
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI 687 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~ 687 (815)
....++|..+|++++.|.+.|..|...|+|..........|.+
T Consensus 39 ~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l 81 (99)
T 3cuo_A 39 TSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSI 81 (99)
T ss_dssp EEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 3578899999999999999999999999999886555555544
No 255
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=73.59 E-value=5.8 Score=32.14 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=33.1
Q ss_pred eeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEec
Q 036378 643 YVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELK 679 (815)
Q Consensus 643 ~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~ 679 (815)
+...+.++|..+|++...|+.-|..|+++|+|.-..+
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~g 59 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNA 59 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCC
Confidence 3467999999999999999999999999999988743
No 256
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=73.44 E-value=18 Score=30.38 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEec
Q 036378 627 KMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELK 679 (815)
Q Consensus 627 ~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~ 679 (815)
.++..+|+... .+ .....+|..+|++...+...|..|..+|+|....+
T Consensus 8 eIi~~IL~~i~--~~---~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~ 55 (95)
T 1r7j_A 8 EIIQAILEACK--SG---SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGK 55 (95)
T ss_dssp HHHHHHHHHHT--TC---BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHH--cC---CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEECC
Confidence 45666776541 22 56789999999999999999999999999998854
No 257
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=73.13 E-value=3.5 Score=35.64 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=31.3
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
..+..+|..+|++++.|++.|..|...|+|...
T Consensus 34 ~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 34 MTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp BCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 478899999999999999999999999999887
No 258
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=72.93 E-value=4.6 Score=42.44 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=20.7
Q ss_pred HHHHcCCCEEEEcCCChhHHHHHHHHH
Q 036378 211 KMVLDKKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 211 ~~il~g~d~li~apTGsGKTl~~~lp~ 237 (815)
..+..+.++++.||+|+|||......+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~~la 67 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVNTLA 67 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHHHHH
Confidence 344568899999999999997654433
No 259
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=72.67 E-value=5.9 Score=42.34 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=25.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVAL 253 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~L 253 (815)
|.-+++.+|.|+|||...+-.+. ..++.++++.....+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 55788999999999964332222 246778888765433
No 260
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=72.63 E-value=7 Score=40.22 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=21.4
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTLV 246 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~lV 246 (815)
+..+++.||+|+|||......+-..+...+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 5689999999999998665444333443333
No 261
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=72.58 E-value=5.8 Score=42.05 Aligned_cols=108 Identities=8% Similarity=-0.043 Sum_probs=54.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHHHHHHHHHhcCC---Cceee-eeccCCChHHHHHHH---HH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVALMIDQLRHLPP---VIHGG-FLSSSQRPEEVAETI---RL 285 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~L~~q~~~~l~~---~~~~~-~i~~~~~~~~~~~~~---~~ 285 (815)
|.-+++.|++|+|||...+-.+. ..+..+++++.-- -..|...++.. .+... .....++..++.... ..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-s~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~ 124 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-SAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDH 124 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-CHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 55678899999999965433322 3466777776532 23344444322 11111 112334454444322 22
Q ss_pred HhcCCceEEE-eChh----hhhchhhhhhhhhcC-cccEEEEecccccc
Q 036378 286 IQVGAIKVLF-VSPE----RFLNADFLSIFTATS-LISLVVVDEAHCVS 328 (815)
Q Consensus 286 l~~g~~~Ili-~TPe----~L~~~~~~~~~~~~~-~i~~lViDEaH~i~ 328 (815)
+... .|.| -+|. .|.... ..+..-. .+++||||-.+.|.
T Consensus 125 l~~~--~l~I~d~~~~si~~i~~~i--r~l~~~~gg~~lIVIDyLqlm~ 169 (338)
T 4a1f_A 125 LSQK--KLFFYDKSYVRIEQIRLQL--RKLKSQHKELGIAFIDYLQLMS 169 (338)
T ss_dssp HHHS--CEEEECCTTCCHHHHHHHH--HHHHHHCTTEEEEEEEEEECCC
T ss_pred HhcC--CeEEeCCCCCcHHHHHHHH--HHHHHhcCCCCEEEEechHHhc
Confidence 3333 3444 3443 222211 1111122 69999999999885
No 262
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=72.39 E-value=34 Score=35.73 Aligned_cols=32 Identities=28% Similarity=0.172 Sum_probs=20.7
Q ss_pred CCCEEEEcCCChhHHHHHHHHH-H--HcCCcEEEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA-M--ILPGLTLVV 247 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~-l--~~~~~~lVl 247 (815)
++-+++++++|+|||.+....+ + ..+++++++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3456788999999996543332 2 236666665
No 263
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=71.94 E-value=15 Score=30.76 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=36.0
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEec-CceEEEEEeCC
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELK-DPAYCYTIVEV 690 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~-~~~~~~~~~~~ 690 (815)
....++|..+|++++.|...|+.|...|+|.-... +....+.....
T Consensus 35 ~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~ 81 (109)
T 1sfx_A 35 MRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAE 81 (109)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEEC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecC
Confidence 46889999999999999999999999999987632 44444443333
No 264
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=71.63 E-value=6.9 Score=42.80 Aligned_cols=78 Identities=14% Similarity=0.045 Sum_probs=59.3
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-Cceeeeecc--------CCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhh
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSS--------SQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIF 310 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~--------~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~ 310 (815)
.+.++||.++++.-+....+.|.. ++....+++ .+...++...++....|.++|||+|. .+ ...+
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-~~-----~~Gl 433 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-VG-----EEGL 433 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-GG-----GGGG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-cc-----ccCC
Confidence 478999999999999999888876 567777887 78888999999999999999999993 22 2233
Q ss_pred hhcCcccEEEEecc
Q 036378 311 TATSLISLVVVDEA 324 (815)
Q Consensus 311 ~~~~~i~~lViDEa 324 (815)
. +..+++||+-+.
T Consensus 434 d-l~~~~~Vi~~d~ 446 (494)
T 1wp9_A 434 D-VPEVDLVVFYEP 446 (494)
T ss_dssp G-STTCCEEEESSC
T ss_pred C-chhCCEEEEeCC
Confidence 3 667888886443
No 265
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=71.59 E-value=9.4 Score=31.98 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=36.7
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI 687 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~ 687 (815)
..+.++|..+|++++.|.+.|..|...|+|..........|.+
T Consensus 37 ~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l 79 (98)
T 3jth_A 37 LSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTL 79 (98)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 4678899999999999999999999999999886655555554
No 266
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=71.20 E-value=19 Score=32.13 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=35.3
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE--ecCceEEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE--LKDPAYCYTI 687 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~--~~~~~~~~~~ 687 (815)
....++|..+|++++.|...|..|++.|+|... .++....+..
T Consensus 42 ~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~ 86 (152)
T 1ku9_A 42 LTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEA 86 (152)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEee
Confidence 467899999999999999999999999999987 3444444443
No 267
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.86 E-value=23 Score=31.37 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=31.0
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
....++|..+|++++.|...|..|+++|+|....
T Consensus 51 ~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 51 MESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 4678899999999999999999999999998873
No 268
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=70.71 E-value=14 Score=36.22 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=43.7
Q ss_pred cccceEEEecchHHHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccc
Q 036378 421 KHYYILQISGKHFETDLISRYLCDN-----SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~-----g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~ 481 (815)
...++++.+.++.-++++++.+... ++.+..++|+.+..++...+ ...+|+|+|.-
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~ 151 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPG 151 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHH
Confidence 3467888899999999988888763 68899999999876654433 35789999963
No 269
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=70.68 E-value=8.5 Score=38.07 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=23.4
Q ss_pred CCCEEEEcCCChhHHH-HHHHHH--H-HcCCcEEEEcc
Q 036378 216 KKSTMLVLPTGAGKSL-CYQIPA--M-ILPGLTLVVCP 249 (815)
Q Consensus 216 g~d~li~apTGsGKTl-~~~lp~--l-~~~~~~lVl~P 249 (815)
|.-+++.|++|+|||. |.++.+ . ..+..+++++-
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 6678999999999994 444432 2 23566777764
No 270
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=70.50 E-value=15 Score=31.91 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=41.1
Q ss_pred hHHHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecC
Q 036378 625 KDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKD 680 (815)
Q Consensus 625 ~~~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~ 680 (815)
++.+...|+... -..|.....+..+|..+|+++.-|+++|..|...|+|....+.
T Consensus 15 ~~~i~~~I~~g~-~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~ 69 (113)
T 3tqn_A 15 RDKIVEAIIDGS-YVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGL 69 (113)
T ss_dssp HHHHHHHHHHTS-SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHcCC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 344555555442 1234444579999999999999999999999999999877544
No 271
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=70.09 E-value=33 Score=30.71 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=47.0
Q ss_pred CHHHHHHHc-CCCHHHHHHHHHHHHHcCcEEEE---ecCceEEEEEeCCCchhhhhHHHHHHHHH
Q 036378 646 DIPTVANSI-GATTIDVSNQLLNLKMRGEITYE---LKDPAYCYTIVEVPSDFCALSAHLTKWLS 706 (815)
Q Consensus 646 ~~~~~a~~~-g~~~~~v~~~l~~l~~~g~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (815)
...+++..+ |++...+...|..|+..|+|.-. ...+...|.+...-.++......+.+|-.
T Consensus 41 rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~ 105 (131)
T 4a5n_A 41 RFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGE 105 (131)
T ss_dssp CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHH
Confidence 567899999 99999999999999999999866 22345667666665566666666776644
No 272
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=69.64 E-value=3.6 Score=45.13 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=18.8
Q ss_pred HHHHHHHHHHc--CCCEEEEcCCChhHHHHH
Q 036378 205 GQLEAIKMVLD--KKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 205 ~Q~~ai~~il~--g~d~li~apTGsGKTl~~ 233 (815)
.+..++..++. |.-++++||||||||...
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 33334443332 446789999999999643
No 273
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=69.42 E-value=8.1 Score=39.54 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=29.6
Q ss_pred cccccccccHHHHHHHhhhhh-hHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCChhHHHHHHHHH
Q 036378 165 RTASELELVEEAVRAVRDEAS-DENLGRLLRLVYGYDSFRDGQLEAIKMVLDKKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 165 ~~~~~l~l~~~l~~~l~~~~~-~~~l~~~l~~~~g~~~~~~~Q~~ai~~il~g~d~li~apTGsGKTl~~~lp~ 237 (815)
.+|++++-.+++.+.+.+... +..-.+.++. +|+. -.+.+++.||.|+|||+..-..+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~-~~l~--------------~~~GvlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKA-LGLV--------------TPAGVLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHH-TTCC--------------CCSEEEEESSTTSCHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHH-cCCC--------------CCCeEEEECCCCCcHHHHHHHHH
Confidence 467888777777777765321 1111112221 2322 12349999999999998654443
No 274
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=69.35 E-value=15 Score=32.98 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=41.8
Q ss_pred HHHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCce
Q 036378 626 DKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPA 682 (815)
Q Consensus 626 ~~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~ 682 (815)
+.+...|+... -..|.....+..+|..+|+++.-|+++|..|...|+|....+...
T Consensus 21 ~~i~~~I~~G~-l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~ 76 (134)
T 4ham_A 21 QKIKEQVVKGV-LQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGT 76 (134)
T ss_dssp HHHHHHHHHTS-SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred HHHHHHHHcCC-CCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEE
Confidence 34444455442 123554557899999999999999999999999999988865543
No 275
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=69.09 E-value=20 Score=34.23 Aligned_cols=58 Identities=7% Similarity=-0.003 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCC--CEEEEcCCChhHHHHHHHHHH----HcCCcEEEEcccHHHHHHHHHhc
Q 036378 204 DGQLEAIKMVLDKK--STMLVLPTGAGKSLCYQIPAM----ILPGLTLVVCPLVALMIDQLRHL 261 (815)
Q Consensus 204 ~~Q~~ai~~il~g~--d~li~apTGsGKTl~~~lp~l----~~~~~~lVl~P~~~L~~q~~~~l 261 (815)
+.|..|+..++... -.++.++-|++|+...+.-++ ..+..+.||+|+..-.....+..
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~ 100 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDE 100 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTT
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhc
Confidence 57999999987544 456779999999977432222 34788999999987766554443
No 276
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=68.84 E-value=3 Score=43.91 Aligned_cols=109 Identities=9% Similarity=0.041 Sum_probs=49.4
Q ss_pred EEEEcCCChhHHHHHHHHH-HHc----CCcEEEEcc-cHHHHHHHHHhcCCCceeeeeccCCChHHHHHHHHHHhcCCce
Q 036378 219 TMLVLPTGAGKSLCYQIPA-MIL----PGLTLVVCP-LVALMIDQLRHLPPVIHGGFLSSSQRPEEVAETIRLIQVGAIK 292 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp~-l~~----~~~~lVl~P-~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~g~~~ 292 (815)
+.+.||+|||||...-... +.. .+.+.++.= ..-+-....... ....................+..+..|...
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~-~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~ 173 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQ-GLMKRKGFPESYDMPSLLRVLNAIKSGQRN 173 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHT-TCGGGTTSGGGBCHHHHHHHHHHHHTTCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhH-HHHhhccCcccccHHHHHHHHHhhhccccc
Confidence 5678999999997654433 222 233433321 100111111111 000000112233445566777888888534
Q ss_pred EEEeChhhhhchhhhhhhhhcCcccEEEEecccccc
Q 036378 293 VLFVSPERFLNADFLSIFTATSLISLVVVDEAHCVS 328 (815)
Q Consensus 293 Ili~TPe~L~~~~~~~~~~~~~~i~~lViDEaH~i~ 328 (815)
|.+-...................-++|||+..+.+.
T Consensus 174 v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~ 209 (321)
T 3tqc_A 174 VRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQ 209 (321)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTC
T ss_pred cccchhhhhccccccCceeeccCCCEEEEEcccccc
Confidence 443322222111000001113456889999888765
No 277
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=68.73 E-value=1 Score=50.35 Aligned_cols=73 Identities=18% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
.+++||.+|++.-+......|.. +.....+++.+...++...++.+..|..+|||+|.- ....+. +.++++|
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~------~~~GlD-ip~v~~V 405 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV------CARGID-VEQVSVV 405 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccc------cccCCc-cccCCEE
Confidence 56899999999999999888887 566778888898889999999999999999999942 122223 5677777
Q ss_pred E
Q 036378 320 V 320 (815)
Q Consensus 320 V 320 (815)
|
T Consensus 406 I 406 (479)
T 3fmp_B 406 I 406 (479)
T ss_dssp -
T ss_pred E
Confidence 5
No 278
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=68.44 E-value=16 Score=31.52 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=30.0
Q ss_pred CHHHHHHHc-CCCHHHHHHHHHHHHHcCcEEEE
Q 036378 646 DIPTVANSI-GATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 646 ~~~~~a~~~-g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
...++|..+ |++++.|...|..|++.|+|.-.
T Consensus 37 ~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~ 69 (112)
T 1z7u_A 37 RNGELMRALDGITQRVLTDRLREMEKDGLVHRE 69 (112)
T ss_dssp CHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEe
Confidence 577899999 99999999999999999999877
No 279
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=68.10 E-value=9.5 Score=40.70 Aligned_cols=35 Identities=9% Similarity=-0.090 Sum_probs=24.5
Q ss_pred CCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEccc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPL 250 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~ 250 (815)
|+-+++.++.|+|||...+-.+ ...+..++++...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5678999999999996543332 2346678887764
No 280
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=67.64 E-value=25 Score=33.44 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=41.9
Q ss_pred ccceEEEecchHHHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcc
Q 036378 422 HYYILQISGKHFETDLISRYLCDN-----SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~-----g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~ 480 (815)
..++++.+.++.-++++++.+... ++.+..++|+.+..+.... ..+..+|+|+|.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~ 130 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATP 130 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCH
Confidence 457888899999998888877652 6789999999886554322 245778999996
No 281
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=67.40 E-value=30 Score=35.94 Aligned_cols=35 Identities=6% Similarity=-0.046 Sum_probs=23.3
Q ss_pred cCCCEEEEcCCChhHHHHHH-HHH--HHcCCcEEEEcc
Q 036378 215 DKKSTMLVLPTGAGKSLCYQ-IPA--MILPGLTLVVCP 249 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~-lp~--l~~~~~~lVl~P 249 (815)
.|.-+++.|++|+|||...+ +.. ...+..+++++-
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 35678899999999995433 332 223456777764
No 282
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=67.37 E-value=14 Score=36.69 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=50.2
Q ss_pred ccceEEEecchHHHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccc-----cc-cccccCCc
Q 036378 422 HYYILQISGKHFETDLISRYLCD----NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA-----FG-MGLDKRDV 491 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~-----~~-~GID~p~v 491 (815)
+..+++++.++.-+.++++.+.. .++.+..++|+.+..++...+.. ..+|+|+|.- +. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45678889999988888766654 58999999999988766554432 4789999952 21 22455566
Q ss_pred cEEEE
Q 036378 492 GAVIH 496 (815)
Q Consensus 492 ~~VI~ 496 (815)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 66554
No 283
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=67.28 E-value=4.1 Score=45.87 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=22.5
Q ss_pred CCHHHHHHHHH-HHcCCCEEEEcCCChhHHHHH
Q 036378 202 FRDGQLEAIKM-VLDKKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 202 ~~~~Q~~ai~~-il~g~d~li~apTGsGKTl~~ 233 (815)
+.+.+..-+.. +-.|..++++||||||||...
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 44544444444 346788999999999999743
No 284
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=67.19 E-value=1.8 Score=48.94 Aligned_cols=129 Identities=13% Similarity=0.082 Sum_probs=73.1
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
++++||.++++.-+......|.+ ......+++.+...++...++.+..|..+|||+|- .....+. +..+++|
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~------~l~~GiD-ip~v~~V 429 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN------VIARGID-VSQVNLV 429 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CC-CTTCCEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC------hhhcCCC-ccCCCEE
Confidence 67899999999999999999887 56677888888888888888999999999999994 1222233 6678888
Q ss_pred EEeccccccccccCchHHHHHHHHHHHHHhcccceeEeeecccChhHHHHHHHHhcCC
Q 036378 320 VVDEAHCVSEWSHNFRPSYMRLRASLLRARLNVECILAMTATATTTTLRDVMSALEIP 377 (815)
Q Consensus 320 ViDEaH~i~~~g~~fr~~~~~i~~~~~~~~~~~~~vl~lSAT~~~~~~~~i~~~l~~~ 377 (815)
|....-... .+..-...|.....+.-|.......+++++..-.......+.+.+...
T Consensus 430 I~~~~p~~~-~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~ 486 (508)
T 3fho_A 430 VNYDMPLDQ-AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRP 486 (508)
T ss_dssp EC----CC------CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCC
T ss_pred EEECCCCcc-cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCC
Confidence 853322100 000011233333333333333344556665544455566666666543
No 285
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=67.19 E-value=15 Score=32.44 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=35.9
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI 687 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~ 687 (815)
..+.++|..+|++.+.|.+.|+.|+..|++..........|.+
T Consensus 60 ~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l 102 (122)
T 1r1t_A 60 LCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQL 102 (122)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 3678999999999999999999999999999886555444544
No 286
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=67.16 E-value=11 Score=31.79 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=38.2
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEEeCC
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEV 690 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~~~~ 690 (815)
..+.++|..+|++++.|.+.|..|...|+|..........|.+...
T Consensus 37 ~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (102)
T 3pqk_A 37 FSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEA 82 (102)
T ss_dssp BCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcH
Confidence 4678899999999999999999999999999886555556655443
No 287
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=67.11 E-value=21 Score=39.18 Aligned_cols=35 Identities=9% Similarity=-0.050 Sum_probs=23.5
Q ss_pred CCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEccc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPL 250 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~ 250 (815)
|.-+++.|++|+|||...+-.+ ...+..+++++--
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 5567899999999996443222 2335677777653
No 288
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=66.94 E-value=3.5 Score=44.16 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.0
Q ss_pred CCCEEEEcCCChhHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~ 233 (815)
+.-++++||||||||...
T Consensus 123 ~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 557889999999999654
No 289
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=66.88 E-value=6.6 Score=30.72 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=29.5
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITY 676 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~ 676 (815)
+...++|..+|++++.|.+.|..|...|+|.-
T Consensus 26 ~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 26 VAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp EEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 46789999999999999999999999999764
No 290
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=66.87 E-value=8.2 Score=31.42 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=31.5
Q ss_pred CHHHHHHHcCCCHH-HHHHHHHHHHHcCcEEEE-ecCc
Q 036378 646 DIPTVANSIGATTI-DVSNQLLNLKMRGEITYE-LKDP 681 (815)
Q Consensus 646 ~~~~~a~~~g~~~~-~v~~~l~~l~~~g~i~~~-~~~~ 681 (815)
...++|..+|+++. .|++.|..|+..|+|... .+.|
T Consensus 27 ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP 64 (79)
T 1xmk_A 27 SALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPP 64 (79)
T ss_dssp EHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred CHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCC
Confidence 47889999999999 999999999999999866 3334
No 291
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=66.40 E-value=56 Score=35.67 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 036378 647 IPTVANSIGATTIDVSNQLLNLKM 670 (815)
Q Consensus 647 ~~~~a~~~g~~~~~v~~~l~~l~~ 670 (815)
...+|.+.|.+..+|.+.|++..+
T Consensus 399 ~~ria~gsg~~~~~v~~l~~~~~~ 422 (433)
T 2xxa_A 399 KRRIAAGSGMQVQDVNRLLKQFDD 422 (433)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHHH
Confidence 668999999999999999988754
No 292
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=66.23 E-value=6.6 Score=31.90 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=30.1
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
+.+.++|..++++...|++.|..|+++|.+.=.
T Consensus 17 vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 17 MEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 578999999999999999999999999987544
No 293
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=65.99 E-value=31 Score=30.57 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=31.2
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
.....+|..+|++++.|...|..|+..|+|....
T Consensus 48 ~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 48 KRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 4678899999999999999999999999998873
No 294
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=65.82 E-value=4.6 Score=42.33 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=15.2
Q ss_pred CCCEEEEcCCChhHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~l 235 (815)
|.-+.+.||+|||||...-+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHH
Confidence 44567889999999976543
No 295
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=65.76 E-value=17 Score=32.04 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=30.5
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
..+.++|..+|++++.|.+.|..|.+.|+|.-.
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 467889999999999999999999999999876
No 296
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=65.00 E-value=16 Score=36.15 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=42.8
Q ss_pred cccceEEEecchHHHHHHHHHHhhC----CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcc-----cccc-ccccCC
Q 036378 421 KHYYILQISGKHFETDLISRYLCDN----SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV-----AFGM-GLDKRD 490 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~-----~~~~-GID~p~ 490 (815)
...++++.+.++.-+.++++.++.. ++.+..++|+..... ..+.+..+..+|+|+|. .+.. .++..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3557888999999999888888653 577888888876433 23445567789999994 2222 244455
Q ss_pred ccEEEE
Q 036378 491 VGAVIH 496 (815)
Q Consensus 491 v~~VI~ 496 (815)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 555554
No 297
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.77 E-value=8 Score=42.56 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=22.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVV 247 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl 247 (815)
.+++++.||+|+|||......+-..+...+.+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v 81 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence 46899999999999987655544444444333
No 298
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=64.70 E-value=16 Score=30.34 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=30.8
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
....++|..+|++++.|...|+.|+..|+|.-..
T Consensus 31 ~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 31 APFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4678899999999999999999999999998653
No 299
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=64.53 E-value=13 Score=32.75 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=33.3
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI 687 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~ 687 (815)
..+.++|..+|++.+.|.+.|..|...|+|..........|.+
T Consensus 57 ~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l 99 (122)
T 1u2w_A 57 LCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSL 99 (122)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEE
Confidence 3678899999999999999999999999998875444444444
No 300
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=64.10 E-value=21 Score=30.92 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=35.6
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI 687 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~ 687 (815)
..+.++|..+|++++.|.+.|..|+..|++..........|.+
T Consensus 46 ~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~ 88 (119)
T 2lkp_A 46 LPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSL 88 (119)
T ss_dssp CCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 3678999999999999999999999999998876544444433
No 301
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=63.86 E-value=20 Score=31.50 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=30.6
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecC
Q 036378 646 DIPTVANSIGATTIDVSNQLLNLKMRGEITYELKD 680 (815)
Q Consensus 646 ~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~ 680 (815)
.+.++|..+|+++..+...|+.|...|.+.-...+
T Consensus 22 ~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~ 56 (121)
T 2pjp_A 22 WVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKD 56 (121)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 57789999999999999999999999987665544
No 302
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=63.72 E-value=12 Score=30.14 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=30.8
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
+.+.++|..+|+++..|.+.|..|.+.|+|...
T Consensus 15 ~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 15 GKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 578899999999999999999999999999865
No 303
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=63.66 E-value=5.8 Score=40.10 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=18.2
Q ss_pred cCCCEEEEcCCChhHHHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~ 237 (815)
.+..+++.||+|+|||......+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHHHH
Confidence 36789999999999998654443
No 304
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=63.63 E-value=12 Score=43.83 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=56.0
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-------CceeeeeccC--------CChHHHHHHHHHHhcCCceEEEeChhhhhchh
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-------VIHGGFLSSS--------QRPEEVAETIRLIQVGAIKVLFVSPERFLNAD 305 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-------~~~~~~i~~~--------~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~ 305 (815)
+.++||.++++..+....+.|.. +++...+++. ++..++...++.+..|..+|||+|- .
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 68999999999999999998876 4777788888 9999999999999999999999993 2
Q ss_pred hhhhhhhcCcccEEEE
Q 036378 306 FLSIFTATSLISLVVV 321 (815)
Q Consensus 306 ~~~~~~~~~~i~~lVi 321 (815)
....+. +..+++||.
T Consensus 474 ~~~GID-ip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLD-IKECNIVIR 488 (699)
T ss_dssp CCTTSC-CCSCCCCEE
T ss_pred cccCCc-cccCCEEEE
Confidence 223333 667888774
No 305
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=63.44 E-value=4.1 Score=43.71 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=18.2
Q ss_pred HHcCCCEEEEcCCChhHHHHHH
Q 036378 213 VLDKKSTMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 213 il~g~d~li~apTGsGKTl~~~ 234 (815)
+..|+.++++||||||||...-
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHHH
Confidence 4468899999999999997543
No 306
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=63.09 E-value=13 Score=36.47 Aligned_cols=55 Identities=20% Similarity=0.071 Sum_probs=40.3
Q ss_pred cccceEEEecchHHHHHHHHHHhhC----CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcc
Q 036378 421 KHYYILQISGKHFETDLISRYLCDN----SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~ 480 (815)
.+.++++.+.++.-+.++++.++.. ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3557888899999999888888763 47899999998765443332 4678999996
No 307
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=62.84 E-value=13 Score=30.98 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=30.0
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
....++|..+|++++.|...|..|++.|+|....
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~ 64 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECEL 64 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCC
Confidence 4678899999999999999999999999994433
No 308
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=62.66 E-value=38 Score=28.23 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=31.1
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
....++|..+|++++.|.+.|..|.+.|+|....
T Consensus 37 ~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 37 ITSEELADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 4678999999999999999999999999998873
No 309
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=62.44 E-value=22 Score=31.49 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=40.6
Q ss_pred hHHHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCc
Q 036378 625 KDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDP 681 (815)
Q Consensus 625 ~~~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~ 681 (815)
++.+...|+... -..|.....+..+|..+|+++.-|+++|..|...|+|.-..+..
T Consensus 19 ~~~i~~~I~~g~-~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G 74 (125)
T 3neu_A 19 SDWMKKQMITGE-WKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125)
T ss_dssp HHHHHHHHHTTS-SCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred HHHHHHHHHhCC-CCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCE
Confidence 344444455432 12244334699999999999999999999999999998875543
No 310
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=62.38 E-value=4 Score=38.73 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=17.0
Q ss_pred cCCCEEEEcCCChhHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~l 235 (815)
.|+-++++||+|+|||.....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467788999999999986544
No 311
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=62.35 E-value=25 Score=31.16 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=40.1
Q ss_pred HHHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecC
Q 036378 626 DKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKD 680 (815)
Q Consensus 626 ~~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~ 680 (815)
+.+...|+... -..|.....+..+|..+|+++.-|+++|..|...|+|....+.
T Consensus 18 ~~l~~~I~~g~-~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 71 (126)
T 3by6_A 18 DRIKNEVATDV-LSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGK 71 (126)
T ss_dssp HHHHHHHHTTS-SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHhCC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 34444444432 1234444589999999999999999999999999999877554
No 312
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=61.62 E-value=21 Score=31.88 Aligned_cols=53 Identities=15% Similarity=-0.006 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecC
Q 036378 627 KMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKD 680 (815)
Q Consensus 627 ~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~ 680 (815)
.+...|+... -..|.....+..+|..+|+++.-|+++|..|...|+|....+.
T Consensus 12 ~i~~~I~~g~-l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~ 64 (129)
T 2ek5_A 12 LIEDSIVDGT-LSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGI 64 (129)
T ss_dssp HHHHHHHTTS-SCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHhCC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCC
Confidence 3444444432 1234444478999999999999999999999999999877554
No 313
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=61.28 E-value=22 Score=31.34 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=30.8
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|++.|+|.-.
T Consensus 53 ~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 53 CPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 467889999999999999999999999999887
No 314
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=61.11 E-value=1.7 Score=46.62 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeChhhhhchhhhhhhhhcCcccEE
Q 036378 241 PGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSPERFLNADFLSIFTATSLISLV 319 (815)
Q Consensus 241 ~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~l 319 (815)
.+++||.++++.-+....+.|.+ +.....+++.+...++...++.+..|..+|+|+|.- ....+. +..+++|
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gld-i~~~~~V 331 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL------LARGID-VQQVSLV 331 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECCh------hhcCCC-cccCCEE
Confidence 56899999999999999888887 566777888888888888899999999999999942 122222 4566666
Q ss_pred EE
Q 036378 320 VV 321 (815)
Q Consensus 320 Vi 321 (815)
|.
T Consensus 332 i~ 333 (394)
T 1fuu_A 332 IN 333 (394)
T ss_dssp --
T ss_pred EE
Confidence 64
No 315
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=61.10 E-value=7.4 Score=43.62 Aligned_cols=28 Identities=29% Similarity=0.320 Sum_probs=21.6
Q ss_pred HHHHHHHcCCCEEEEcCCChhHHHHHHH
Q 036378 208 EAIKMVLDKKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 208 ~ai~~il~g~d~li~apTGsGKTl~~~l 235 (815)
.++..+..+.++++.||+|+|||.....
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHHHH
Confidence 3444556789999999999999985543
No 316
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=61.09 E-value=44 Score=34.46 Aligned_cols=31 Identities=26% Similarity=0.031 Sum_probs=19.8
Q ss_pred CEEEEcCCChhHHHHHHHHH-H--HcCCcEEEEc
Q 036378 218 STMLVLPTGAGKSLCYQIPA-M--ILPGLTLVVC 248 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~-l--~~~~~~lVl~ 248 (815)
-+++++++|+|||......+ . ..+++++++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46678999999996544333 2 2356666554
No 317
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=61.04 E-value=15 Score=35.98 Aligned_cols=72 Identities=7% Similarity=0.025 Sum_probs=45.3
Q ss_pred cccceEEEecchHHHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccc------ccccccCCc
Q 036378 421 KHYYILQISGKHFETDLISRYLCD---NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF------GMGLDKRDV 491 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~---~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~------~~GID~p~v 491 (815)
.+..+++++.++.-+.++++.+.. .++.+..++|+.+..++...+ . ...+|+|+|.-- ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456688889999999999888876 478899999988765543332 2 357899999621 123445555
Q ss_pred cEEEE
Q 036378 492 GAVIH 496 (815)
Q Consensus 492 ~~VI~ 496 (815)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 55553
No 318
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=61.01 E-value=27 Score=32.22 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=28.1
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
....++|..+|++++.|...|..|+++|+|.-..
T Consensus 63 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 63 MATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp EEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 3678899999999999999999999999998873
No 319
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=60.80 E-value=43 Score=29.64 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=31.2
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
..+..+|..+|++++.|.+.|+.|++.|+|....
T Consensus 32 ~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 32 AKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 4688999999999999999999999999998764
No 320
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=60.75 E-value=3.6 Score=41.95 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCChhHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~ 233 (815)
.|.-++++||||||||...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 4677899999999999654
No 321
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=60.48 E-value=7.3 Score=32.35 Aligned_cols=33 Identities=6% Similarity=0.133 Sum_probs=29.9
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
+.+.++|..+|++...|++.|..|+++|++.=.
T Consensus 17 vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 17 MEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 578999999999999999999999999987544
No 322
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=60.34 E-value=20 Score=34.19 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=42.0
Q ss_pred ccceEEEecchHHHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcc
Q 036378 422 HYYILQISGKHFETDLISRYLCDN--SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~--g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~ 480 (815)
..++++.+.++.-+..+++.+... ++.+..++|+.+.......+. ...+|+|+|.
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 457888899999999999988875 478889999987655443332 3578999995
No 323
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=60.16 E-value=11 Score=35.56 Aligned_cols=15 Identities=20% Similarity=0.014 Sum_probs=12.4
Q ss_pred CEEEEcCCChhHHHH
Q 036378 218 STMLVLPTGAGKSLC 232 (815)
Q Consensus 218 d~li~apTGsGKTl~ 232 (815)
-+.+.++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999964
No 324
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=59.73 E-value=23 Score=30.18 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=29.3
Q ss_pred CHHHHHHHc-CCCHHHHHHHHHHHHHcCcEEEE
Q 036378 646 DIPTVANSI-GATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 646 ~~~~~a~~~-g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
...++|..+ |++.+.|...|..|++.|+|.-.
T Consensus 40 ~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~ 72 (107)
T 2fsw_A 40 RYGELKRAIPGISEKMLIDELKFLCGKGLIKKK 72 (107)
T ss_dssp EHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEe
Confidence 467899999 59999999999999999999866
No 325
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=59.69 E-value=5.6 Score=42.49 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 5666777875 567799999999875
No 326
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=59.31 E-value=4.2 Score=43.05 Aligned_cols=17 Identities=41% Similarity=0.374 Sum_probs=14.2
Q ss_pred CCEEEEcCCChhHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~ 233 (815)
+-++++||||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46789999999999754
No 327
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=59.07 E-value=20 Score=40.13 Aligned_cols=36 Identities=11% Similarity=-0.069 Sum_probs=23.7
Q ss_pred cCCCEEEEcCCChhHHHHHHHHHH---Hc-CCcEEEEccc
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPAM---IL-PGLTLVVCPL 250 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~l---~~-~~~~lVl~P~ 250 (815)
.|.-+++.|++|+|||...+-.+. .. +..+++++--
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 356688999999999964433332 22 4567777653
No 328
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=59.02 E-value=5 Score=38.78 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCChhHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~l 235 (815)
.|+-+.++||+|+|||...-+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 377889999999999976543
No 329
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=58.97 E-value=7.3 Score=42.06 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=24.8
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLV 251 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~ 251 (815)
+.+++++|+||+|||......+. ..+..++|+=|..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~ 73 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPER 73 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 67999999999999975433222 2366677766643
No 330
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=58.94 E-value=6.5 Score=37.85 Aligned_cols=25 Identities=24% Similarity=0.033 Sum_probs=19.6
Q ss_pred cCCCEEEEcCCChhHHHHHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~l~ 239 (815)
.++.++++|++|||||......+-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4778999999999999876555433
No 331
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=58.82 E-value=22 Score=34.75 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=42.0
Q ss_pred hHHHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecC
Q 036378 625 KDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKD 680 (815)
Q Consensus 625 ~~~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~ 680 (815)
++.+...|+.+. -..|... .+..+|..+|+++.-|+.+|..|...|+|....+.
T Consensus 18 ~~~l~~~I~~g~-l~pG~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 71 (218)
T 3sxy_A 18 YNLLKEMILNHE-LKLGEKL-NVRELSEKLGISFTPVRDALLQLATEGLVKVVPRV 71 (218)
T ss_dssp HHHHHHHHHTTS-SCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTT
T ss_pred HHHHHHHHHhCC-CCCCCEe-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 445555566543 1235544 89999999999999999999999999999988654
No 332
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=58.72 E-value=7.9 Score=41.46 Aligned_cols=27 Identities=41% Similarity=0.452 Sum_probs=20.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPG 242 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~ 242 (815)
...+++.||+|+|||......+-..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 458999999999999876555444443
No 333
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=58.53 E-value=22 Score=34.79 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=41.8
Q ss_pred hHHHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCc
Q 036378 625 KDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDP 681 (815)
Q Consensus 625 ~~~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~ 681 (815)
++.+...|+.+. -..|... .+..+|..+|+++.-|+.+|..|+..|+|....+..
T Consensus 22 ~~~l~~~I~~g~-l~pG~~L-~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~~G 76 (222)
T 3ihu_A 22 FFGIMSGLELGT-FVPGQRL-VETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRG 76 (222)
T ss_dssp HHHHHHHHHHTS-SCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTC
T ss_pred HHHHHHHHHhCC-CCCCCcc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCC
Confidence 445555566553 1234433 499999999999999999999999999999886544
No 334
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=58.47 E-value=18 Score=35.02 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=35.4
Q ss_pred cccceEEEecchHHHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcc
Q 036378 421 KHYYILQISGKHFETDLISRYLCD----NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~ 480 (815)
...++++++.++.-+.++++.+.. .++.+..++|+.+..++... + ...+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECH
Confidence 456788889999999888887765 47889999999876554332 2 2378999995
No 335
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=58.43 E-value=24 Score=31.46 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=30.6
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 646 DIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 646 ~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
...++|..+|++++.|...|..|+++|+|.-..
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 577899999999999999999999999998873
No 336
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=58.16 E-value=7.6 Score=38.51 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=23.1
Q ss_pred cCCCEEEEcCCChhHHHHHHHHH---H-HcCCcEEEEc
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPA---M-ILPGLTLVVC 248 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~---l-~~~~~~lVl~ 248 (815)
.|.-+.+.||+|+|||......+ + ..+..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 47788999999999997554333 2 3455555554
No 337
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=57.90 E-value=13 Score=39.26 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=18.1
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l 238 (815)
++.+++.||+|+|||......+-
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999987654443
No 338
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=57.84 E-value=7.1 Score=36.84 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=18.2
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l 238 (815)
++.++++|++|||||.+....+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999987655443
No 339
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=57.65 E-value=25 Score=31.10 Aligned_cols=33 Identities=27% Similarity=0.203 Sum_probs=30.6
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|+++|+|.-.
T Consensus 48 ~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 48 LTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 357889999999999999999999999999877
No 340
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=57.54 E-value=5.3 Score=38.91 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=17.2
Q ss_pred cCCCEEEEcCCChhHHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp 236 (815)
.|+-++++||+|+|||......
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHH
Confidence 3667889999999999865443
No 341
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=57.53 E-value=5.1 Score=42.33 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=17.2
Q ss_pred HcCCCEEEEcCCChhHHHHH
Q 036378 214 LDKKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 214 l~g~d~li~apTGsGKTl~~ 233 (815)
..|+.++++||||||||...
T Consensus 169 ~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45889999999999999743
No 342
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=57.49 E-value=8.3 Score=38.10 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=24.9
Q ss_pred cCCCEEEEcCCChhHHHHH-HHHH--HHcCCcEEEEccc
Q 036378 215 DKKSTMLVLPTGAGKSLCY-QIPA--MILPGLTLVVCPL 250 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~-~lp~--l~~~~~~lVl~P~ 250 (815)
.|.-+++.||+|+|||... ++.. ...+..++++.-.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3677899999999999753 3332 2346677777643
No 343
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=57.48 E-value=20 Score=29.83 Aligned_cols=36 Identities=8% Similarity=-0.045 Sum_probs=30.7
Q ss_pred CHHHH----HHHcCCCHHHHHHHHHHHHHcCcEEEEecCc
Q 036378 646 DIPTV----ANSIGATTIDVSNQLLNLKMRGEITYELKDP 681 (815)
Q Consensus 646 ~~~~~----a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~ 681 (815)
...++ |..+|++++.|...|..|++.|+|.-.....
T Consensus 24 ~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r 63 (99)
T 1tbx_A 24 ATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERG 63 (99)
T ss_dssp BHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 45667 8899999999999999999999998775443
No 344
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=57.48 E-value=5.8 Score=41.41 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=14.5
Q ss_pred CEEEEcCCChhHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp 236 (815)
-++++||||+|||....-.
T Consensus 12 ~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 4678999999999755433
No 345
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=57.39 E-value=22 Score=31.32 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=30.6
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 646 DIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 646 ~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
...++|..+|++++.|...|..|+++|+|.-..
T Consensus 45 ~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 45 KQDELATFFHVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeec
Confidence 578899999999999999999999999998873
No 346
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=57.29 E-value=1.4e+02 Score=28.93 Aligned_cols=50 Identities=8% Similarity=0.088 Sum_probs=38.9
Q ss_pred HHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEec
Q 036378 627 KMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELK 679 (815)
Q Consensus 627 ~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~ 679 (815)
..+.+++.-..... .....++|..+|++++.|...|+.|+++|+|.+...
T Consensus 6 dYL~~I~~l~~~~~---~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 6 DYLKCLYELGTRHN---KITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp HHHHHHHHTTSSCS---CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhcCC---CcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 45666665542111 246889999999999999999999999999998854
No 347
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=57.24 E-value=19 Score=39.61 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=18.1
Q ss_pred CCCEEEEcCCChhHHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l 238 (815)
++.+|+.||+|+|||.....-+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999986654443
No 348
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=56.77 E-value=5.1 Score=41.94 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=14.6
Q ss_pred CCEEEEcCCChhHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~l 235 (815)
+-+++.||||+|||....-
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3467899999999975443
No 349
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=56.28 E-value=31 Score=40.40 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=51.3
Q ss_pred HHHHcCCcEEEEcccHHHHHHHHHhcCCC-------------------------------------ceeeeeccCCChHH
Q 036378 236 PAMILPGLTLVVCPLVALMIDQLRHLPPV-------------------------------------IHGGFLSSSQRPEE 278 (815)
Q Consensus 236 p~l~~~~~~lVl~P~~~L~~q~~~~l~~~-------------------------------------~~~~~i~~~~~~~~ 278 (815)
-.+..++.+||.+|++.-+......|.+. .....++++++..+
T Consensus 247 ~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 326 (715)
T 2va8_A 247 DSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKAL 326 (715)
T ss_dssp HHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred HHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHH
Confidence 34456789999999999888877776542 12567889999999
Q ss_pred HHHHHHHHhcCCceEEEeCh
Q 036378 279 VAETIRLIQVGAIKVLFVSP 298 (815)
Q Consensus 279 ~~~~~~~l~~g~~~Ili~TP 298 (815)
+....+....|..+|||+|.
T Consensus 327 r~~v~~~f~~g~~~vlvaT~ 346 (715)
T 2va8_A 327 RDLIEEGFRQRKIKVIVATP 346 (715)
T ss_dssp HHHHHHHHHTTCSCEEEECG
T ss_pred HHHHHHHHHcCCCeEEEECh
Confidence 99999999999999999994
No 350
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=56.18 E-value=9.8 Score=35.52 Aligned_cols=30 Identities=27% Similarity=0.195 Sum_probs=20.9
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEE
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTL 245 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~l 245 (815)
++-+++.|+.|||||.+....+-..+...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 456889999999999876655444443333
No 351
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=55.97 E-value=36 Score=34.12 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=50.1
Q ss_pred cccceEEEecchHHHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccc-----c--ccccccC
Q 036378 421 KHYYILQISGKHFETDLISRYLCD----NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA-----F--GMGLDKR 489 (815)
Q Consensus 421 ~~~~~ivf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~-----~--~~GID~p 489 (815)
.+.++++++.++.-++++++.+++ .+..+..++|+.........+ ..+ .+|+|+|.- + ..+++..
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356688889999999888887775 467888999998866554333 233 889999952 1 1235566
Q ss_pred CccEEEE
Q 036378 490 DVGAVIH 496 (815)
Q Consensus 490 ~v~~VI~ 496 (815)
++++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 6666654
No 352
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=55.82 E-value=7.2 Score=39.33 Aligned_cols=18 Identities=22% Similarity=0.128 Sum_probs=14.3
Q ss_pred EEEEcCCChhHHHHHHHH
Q 036378 219 TMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 219 ~li~apTGsGKTl~~~lp 236 (815)
+++.||||||||......
T Consensus 4 i~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHH
Confidence 678999999999765433
No 353
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=55.73 E-value=21 Score=32.88 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=36.0
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEE
Q 036378 646 DIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI 687 (815)
Q Consensus 646 ~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~ 687 (815)
.+..+|..+|++++.|.+.|+.|.+.|+|..........|.+
T Consensus 73 t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~l 114 (151)
T 3f6v_A 73 TVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRL 114 (151)
T ss_dssp EHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 578899999999999999999999999999886555555554
No 354
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=55.57 E-value=47 Score=28.14 Aligned_cols=52 Identities=19% Similarity=0.082 Sum_probs=44.4
Q ss_pred eEEEecchHHHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHHHhcCCceEE
Q 036378 425 ILQISGKHFETDLISRYLCDNSISVKSYHSGIPAKDRSRIQELFCSNKIRVV 476 (815)
Q Consensus 425 ~ivf~~s~~~~e~l~~~L~~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VL 476 (815)
.++|.....-..++...++..|..+..+.++.+.+.|.+.++.|.....+|-
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 4567777788889999999999999999999999999999999987655543
No 355
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=55.31 E-value=7.9 Score=42.09 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=20.3
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~~ 234 (815)
.|..+++|.+ +++.|+||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 5666777876 4677999999998763
No 356
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=54.83 E-value=34 Score=30.47 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=30.8
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.....+|..+|++++.|...|..|+..|+|...
T Consensus 51 ~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 51 VTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 468899999999999999999999999999887
No 357
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=54.72 E-value=8 Score=40.79 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.+..+++|.+ +++.|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 5666777875 567899999999875
No 358
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=54.63 E-value=16 Score=32.90 Aligned_cols=37 Identities=14% Similarity=-0.050 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHhcCCCCccch
Q 036378 770 PFLRADIKVFLQSNLNAKFTPRAVARILHGIASPAYPS 807 (815)
Q Consensus 770 ~~~~~~i~~~l~~~~~~~~~~~~ia~il~Gi~sp~~~~ 807 (815)
+..+++|++++.+..+ +|+...|+.||+|..+.++-.
T Consensus 15 T~~AqkiLs~V~r~~~-rfG~~~iidvLrGs~~~ki~~ 51 (134)
T 3aaf_A 15 GPQAFKLLSAVDILGE-KFGIGLPILFLRGSNSQRLAD 51 (134)
T ss_dssp HHHHHHHHHHHHHTTT-CSCTHHHHHHHTTCCCTTSCG
T ss_pred hHHHHHHHHHHHHHcC-cccccchhhhhcCCcHHHHHH
Confidence 7789999999998865 999999999999999998876
No 359
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=54.55 E-value=9.8 Score=35.31 Aligned_cols=26 Identities=42% Similarity=0.415 Sum_probs=19.4
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILP 241 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~ 241 (815)
+..+++.|+.|||||...-+.+-..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999987655544333
No 360
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=54.54 E-value=31 Score=34.23 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=41.6
Q ss_pred hHHHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecC
Q 036378 625 KDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKD 680 (815)
Q Consensus 625 ~~~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~ 680 (815)
++.+...|+... -..|... .+..+|..+|+++.-|+.+|..|...|+|....+.
T Consensus 34 ~~~l~~~I~~g~-l~pG~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 87 (239)
T 2hs5_A 34 AGILRDAIIDGT-FRPGARL-SEPDICAALDVSRNTVREAFQILIEDRLVAHELNR 87 (239)
T ss_dssp HHHHHHHHHHTS-SCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHcCC-CCCcCEe-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 445555555543 1235444 89999999999999999999999999999988654
No 361
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=54.25 E-value=7.9 Score=41.34 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=19.4
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
+|..+++|.+ +++.|+||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 5666777876 467799999999874
No 362
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=53.87 E-value=7.8 Score=40.80 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=19.3
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4556667775 577899999999875
No 363
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=53.73 E-value=30 Score=28.60 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=32.3
Q ss_pred eCHHHHHHHcCCCHHH-HHHHHHHHHHcCcEEEEecCce
Q 036378 645 FDIPTVANSIGATTID-VSNQLLNLKMRGEITYELKDPA 682 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~-v~~~l~~l~~~g~i~~~~~~~~ 682 (815)
....++|..+|++++. |...|..|++.|+|.....+..
T Consensus 31 ~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR 69 (95)
T 2pg4_A 31 PSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYR 69 (95)
T ss_dssp CCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETT
T ss_pred CCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCC
Confidence 4788999999999999 9999999999999994434433
No 364
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=53.67 E-value=7.4 Score=37.01 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=15.9
Q ss_pred CCCEEEEcCCChhHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp 236 (815)
++-+.++||+|+|||...-+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L 21 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 345788999999999865443
No 365
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=53.66 E-value=6.7 Score=37.65 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=17.3
Q ss_pred cCCCEEEEcCCChhHHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp 236 (815)
.|.-+.++||+|||||...-+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHH
Confidence 4677889999999999865443
No 366
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=53.63 E-value=7.8 Score=42.09 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=19.8
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~~ 234 (815)
.|..+++|.+ +++.|+||||||.+..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 5566677775 5778999999998753
No 367
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=53.50 E-value=33 Score=30.57 Aligned_cols=32 Identities=13% Similarity=0.228 Sum_probs=29.5
Q ss_pred CHHHHHHHc-CCCHHHHHHHHHHHHHcCcEEEE
Q 036378 646 DIPTVANSI-GATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 646 ~~~~~a~~~-g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
...+++..+ |++.+.|...|..|++.|+|.-.
T Consensus 50 ~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~ 82 (131)
T 1yyv_A 50 RFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRV 82 (131)
T ss_dssp EHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEE
Confidence 467899999 79999999999999999999866
No 368
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=53.38 E-value=5.7 Score=38.65 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.5
Q ss_pred CCCEEEEcCCChhHHHH
Q 036378 216 KKSTMLVLPTGAGKSLC 232 (815)
Q Consensus 216 g~d~li~apTGsGKTl~ 232 (815)
|+-+++.||||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56789999999999864
No 369
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=53.13 E-value=20 Score=43.68 Aligned_cols=93 Identities=14% Similarity=0.021 Sum_probs=70.3
Q ss_pred CChhHHHHHHHHHHH--cCCcEEEEcccHHHHHHHHHhcCC--CceeeeeccCCChHHHHHHHHHHhcCC--ceEEEeCh
Q 036378 225 TGAGKSLCYQIPAMI--LPGLTLVVCPLVALMIDQLRHLPP--VIHGGFLSSSQRPEEVAETIRLIQVGA--IKVLFVSP 298 (815)
Q Consensus 225 TGsGKTl~~~lp~l~--~~~~~lVl~P~~~L~~q~~~~l~~--~~~~~~i~~~~~~~~~~~~~~~l~~g~--~~Ili~TP 298 (815)
..+.|-.. +.-++. .+.++||.++++.-+......|.. +++...+++.++..++...++.+..|+ ++|||+|
T Consensus 486 ~~~~K~~~-L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT- 563 (968)
T 3dmq_A 486 NFDPRVEW-LMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS- 563 (968)
T ss_dssp TTSHHHHH-HHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-
T ss_pred CccHHHHH-HHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-
Confidence 34455433 333332 478999999999999999999984 788899999999999999999999998 9999999
Q ss_pred hhhhchhhhhhhhhcCcccEEEEeccc
Q 036378 299 ERFLNADFLSIFTATSLISLVVVDEAH 325 (815)
Q Consensus 299 e~L~~~~~~~~~~~~~~i~~lViDEaH 325 (815)
..+. ..+. +..+++||+-+..
T Consensus 564 ~v~~-----~GlD-l~~~~~VI~~d~p 584 (968)
T 3dmq_A 564 EIGS-----EGRN-FQFASHMVMFDLP 584 (968)
T ss_dssp CCTT-----CSSC-CTTCCEEECSSCC
T ss_pred chhh-----cCCC-cccCcEEEEecCC
Confidence 3322 1222 6678888876655
No 370
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=53.07 E-value=9.8 Score=40.26 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=15.3
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
-+++.||||||||......+
T Consensus 9 lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHH
Confidence 46789999999998654433
No 371
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=53.06 E-value=28 Score=31.68 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=33.8
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe--cCceEEEEE
Q 036378 646 DIPTVANSIGATTIDVSNQLLNLKMRGEITYEL--KDPAYCYTI 687 (815)
Q Consensus 646 ~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~--~~~~~~~~~ 687 (815)
...+++..+|++++.|...|+.|++.|+|.-.. .++...|.+
T Consensus 39 ~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~L 82 (146)
T 2f2e_A 39 RFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRL 82 (146)
T ss_dssp SHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEE
Confidence 577899999999999999999999999998763 234444443
No 372
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=53.01 E-value=7.7 Score=38.10 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.4
Q ss_pred cCCCEEEEcCCChhHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~l 235 (815)
.|+-+.++||+|+|||...-+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKK 42 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 588899999999999975543
No 373
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=52.90 E-value=7.3 Score=40.64 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=23.2
Q ss_pred cCCCEEEEcCCChhHHHHHHHHH-HHcCCcEEEEcc
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPA-MILPGLTLVVCP 249 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~-l~~~~~~lVl~P 249 (815)
.|+-+.++||+|+|||....+.+ +. .|.+++.+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~ 159 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFAN 159 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEec
Confidence 47788899999999996544333 33 666654443
No 374
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=52.81 E-value=7.6 Score=40.82 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=15.5
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
-++++||||+|||......+
T Consensus 7 ~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999998654433
No 375
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=52.61 E-value=27 Score=31.34 Aligned_cols=33 Identities=6% Similarity=0.127 Sum_probs=30.7
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.....+|..+|++++.|...|..|+++|+|...
T Consensus 57 ~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 57 LTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 367889999999999999999999999999887
No 376
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=52.57 E-value=8.2 Score=41.19 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=19.0
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.+..+++|.+ +++.|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4555667775 477799999999875
No 377
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=52.41 E-value=30 Score=30.86 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=30.7
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|+..|+|.-.
T Consensus 46 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 46 RTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 467889999999999999999999999999876
No 378
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=52.39 E-value=48 Score=43.42 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=28.5
Q ss_pred HHHHHHc------CCCEEEEcCCChhHHHHHHHHHH---HcCCcEEEEcccHH
Q 036378 209 AIKMVLD------KKSTMLVLPTGAGKSLCYQIPAM---ILPGLTLVVCPLVA 252 (815)
Q Consensus 209 ai~~il~------g~d~li~apTGsGKTl~~~lp~l---~~~~~~lVl~P~~~ 252 (815)
.+..++. |.-+++.+|+|+|||...+-.+. ..+..+++++--.+
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s 422 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 422 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence 4566664 56778999999999965433332 23567777765443
No 379
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=52.34 E-value=6.5 Score=37.77 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=17.5
Q ss_pred cCCCEEEEcCCChhHHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp 236 (815)
.|.-+.++||+|||||...-+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4777889999999999765443
No 380
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=52.32 E-value=7.9 Score=41.07 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=19.0
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4555667775 477899999999874
No 381
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=52.09 E-value=15 Score=32.09 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=34.9
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEE
Q 036378 646 DIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTI 687 (815)
Q Consensus 646 ~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~ 687 (815)
.+.++|..+|++++.|.+.|+.|...|+|..........|.+
T Consensus 36 ~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l 77 (118)
T 2jsc_A 36 YPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYAL 77 (118)
T ss_dssp STTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEE
Confidence 456799999999999999999999999998876555555544
No 382
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=51.92 E-value=28 Score=40.78 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=51.9
Q ss_pred HHHHHcCCcEEEEcccHHHHHHHHHhcCCC----------------------------------ceeeeeccCCChHHHH
Q 036378 235 IPAMILPGLTLVVCPLVALMIDQLRHLPPV----------------------------------IHGGFLSSSQRPEEVA 280 (815)
Q Consensus 235 lp~l~~~~~~lVl~P~~~L~~q~~~~l~~~----------------------------------~~~~~i~~~~~~~~~~ 280 (815)
.-.+..++.+||.+|++.-+......+.+. .....+++++...++.
T Consensus 231 ~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 310 (720)
T 2zj8_A 231 YDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERV 310 (720)
T ss_dssp HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHH
Confidence 334556899999999999988877766531 1256788999999999
Q ss_pred HHHHHHhcCCceEEEeCh
Q 036378 281 ETIRLIQVGAIKVLFVSP 298 (815)
Q Consensus 281 ~~~~~l~~g~~~Ili~TP 298 (815)
...+....|..+|||+|.
T Consensus 311 ~v~~~f~~g~~~vlvaT~ 328 (720)
T 2zj8_A 311 LVEENFRKGIIKAVVATP 328 (720)
T ss_dssp HHHHHHHTTSSCEEEECS
T ss_pred HHHHHHHCCCCeEEEECc
Confidence 999999999999999994
No 383
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=51.69 E-value=32 Score=31.31 Aligned_cols=33 Identities=6% Similarity=0.099 Sum_probs=30.7
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|+++|+|.-.
T Consensus 65 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 65 INQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 367889999999999999999999999999887
No 384
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=51.66 E-value=29 Score=32.06 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.6
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|+++|+|.-.
T Consensus 69 ~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 69 QSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEee
Confidence 467889999999999999999999999999877
No 385
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=51.66 E-value=16 Score=29.26 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=28.5
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITY 676 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~ 676 (815)
+.-.++|..+|+++.+|-++|..|...|.|.-
T Consensus 35 lkageIae~~GvdKKeVdKaik~LKkEgkI~S 66 (80)
T 2lnb_A 35 VKLAQLVKECQAPKRELNQVLYRMKKELKVSL 66 (80)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHcCCccC
Confidence 45678999999999999999999999998753
No 386
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=51.57 E-value=8.8 Score=40.81 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=19.0
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4555667775 577899999999875
No 387
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=51.55 E-value=7.8 Score=37.59 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=17.1
Q ss_pred cCCCEEEEcCCChhHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~l 235 (815)
.|+-++++||+|+|||.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHH
Confidence 477889999999999975443
No 388
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=51.50 E-value=7.7 Score=41.27 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4556667775 567899999999875
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=51.38 E-value=6.2 Score=42.48 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCChhHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~ 233 (815)
.|..++++||||||||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667899999999999654
No 390
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=51.38 E-value=9.5 Score=41.52 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=19.9
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5667777875 467799999999875
No 391
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=51.28 E-value=8.9 Score=41.03 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 4556667775 577899999999875
No 392
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=51.20 E-value=40 Score=31.05 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=30.7
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|+++|+|.-.
T Consensus 60 ~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 60 INLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 457889999999999999999999999999887
No 393
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=51.00 E-value=7.8 Score=41.40 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=19.3
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4556677875 567899999999875
No 394
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=50.99 E-value=8.8 Score=41.18 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4556677775 467799999999875
No 395
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=50.87 E-value=6 Score=39.99 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=17.0
Q ss_pred CCCEEEEcCCChhHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~ 237 (815)
.+.+++.||+|+|||......+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHH
Confidence 4568999999999998654433
No 396
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=50.80 E-value=18 Score=35.13 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=39.4
Q ss_pred ccceEEEecchHHHHHHHHHHhhC--------CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcc
Q 036378 422 HYYILQISGKHFETDLISRYLCDN--------SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATV 480 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~--------g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~ 480 (815)
..++++.+.++.-+.++++.+.+. ++.+..++|+.+..+..+ . ..+..+|+|+|.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~~~Iiv~Tp 134 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---K-LNVQPHIVIGTP 134 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---C-CSSCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---H-cCCCCCEEEeCH
Confidence 457888899999988888776642 688899999986443221 1 124678999995
No 397
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=50.66 E-value=8.3 Score=41.30 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=18.9
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4555667775 567799999999764
No 398
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=50.59 E-value=9.2 Score=40.85 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=15.9
Q ss_pred cCCC--EEEEcCCChhHHHHHH
Q 036378 215 DKKS--TMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 215 ~g~d--~li~apTGsGKTl~~~ 234 (815)
.|.+ +++.|+||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 3665 5888999999998753
No 399
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=50.49 E-value=36 Score=27.21 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=33.5
Q ss_pred CHHHHHHHcC----CCHHHHHHHHHHHHHcCcEEEEecCceEEEEE
Q 036378 646 DIPTVANSIG----ATTIDVSNQLLNLKMRGEITYELKDPAYCYTI 687 (815)
Q Consensus 646 ~~~~~a~~~g----~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~ 687 (815)
...++|..++ ++++.|...|..|.++|+|.....+....|..
T Consensus 25 t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~ 70 (82)
T 1p6r_A 25 NTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTP 70 (82)
T ss_dssp EHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCCEEEEEe
Confidence 5566777664 89999999999999999999886555666643
No 400
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=50.31 E-value=12 Score=35.13 Aligned_cols=23 Identities=22% Similarity=0.093 Sum_probs=18.5
Q ss_pred cCCCEEEEcCCChhHHHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~ 237 (815)
.++.+++.|+.|||||......+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 46789999999999998765544
No 401
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=50.22 E-value=6.7 Score=37.20 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=17.0
Q ss_pred cCCCEEEEcCCChhHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~l 235 (815)
.|+-++++||.|||||...-+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 467788999999999986543
No 402
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=50.20 E-value=40 Score=29.58 Aligned_cols=32 Identities=9% Similarity=0.019 Sum_probs=30.1
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 646 DIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 646 ~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
...++|..+|++++.|...|..|+.+|+|.-.
T Consensus 50 ~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 50 TPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 57789999999999999999999999999887
No 403
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=50.17 E-value=9.3 Score=39.40 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=16.0
Q ss_pred CCEEEEcCCChhHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp 236 (815)
..+++.||+|+|||.+....
T Consensus 48 ~~~ll~G~~GtGKt~la~~l 67 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTL 67 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 36899999999999765433
No 404
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=50.16 E-value=46 Score=32.91 Aligned_cols=56 Identities=13% Similarity=-0.057 Sum_probs=41.7
Q ss_pred ccceEEEecchHHHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccc
Q 036378 422 HYYILQISGKHFETDLISRYLCD----NSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA 481 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~----~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~ 481 (815)
..++++.+.++.-+.++++.+.. .++.+..++|+.+..+....+ ....+|+|+|.-
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~ 159 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPG 159 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHH
Confidence 45788899999998888877764 467888999998765543322 356789999963
No 405
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=50.08 E-value=7.3 Score=41.43 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=19.3
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~~ 234 (815)
.|..+++|.+ +++.|+||||||.+..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4455566775 5678999999998763
No 406
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=50.03 E-value=9.6 Score=40.45 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4556677875 467799999999874
No 407
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=49.96 E-value=9.2 Score=40.75 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=19.5
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 5566677876 467799999999875
No 408
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=49.90 E-value=28 Score=30.18 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=36.7
Q ss_pred eCHHHHHHHcC----CCHHHHHHHHHHHHHcCcEEEEecCceEEEEEeCC
Q 036378 645 FDIPTVANSIG----ATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEV 690 (815)
Q Consensus 645 ~~~~~~a~~~g----~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~~~~ 690 (815)
....++|..++ ++++.|...|..|+.+|+|.-...+....|....+
T Consensus 25 ~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~ 74 (123)
T 1okr_A 25 ASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVE 74 (123)
T ss_dssp EEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSC
T ss_pred cCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecC
Confidence 35677888888 88999999999999999999886666666554444
No 409
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=49.90 E-value=9.6 Score=41.07 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=19.9
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~~ 234 (815)
.|..+++|.+ +++.|+||||||.+..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 5566777875 5778999999998753
No 410
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=49.72 E-value=13 Score=37.91 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=24.6
Q ss_pred cCCCCCCHHHHH-HHHHHHcCC-----CEEEEcCCChhHHHHHH
Q 036378 197 YGYDSFRDGQLE-AIKMVLDKK-----STMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 197 ~g~~~~~~~Q~~-ai~~il~g~-----d~li~apTGsGKTl~~~ 234 (815)
.||+ |.+.. ++..++.++ .+++.||.|+|||+.+.
T Consensus 82 qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 82 NGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp TTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred cCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4655 66533 456666654 48899999999998665
No 411
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=49.70 E-value=8.9 Score=40.87 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 4555666775 577899999999875
No 412
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=49.63 E-value=59 Score=28.68 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=30.8
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.....+|..+|++++.|...|..|++.|+|...
T Consensus 53 ~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 53 PTQRELAQSVGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCCChhhHHHHHHHHHHCCCeeec
Confidence 367889999999999999999999999999887
No 413
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=49.54 E-value=10 Score=39.35 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.3
Q ss_pred CCCEEEEcCCChhHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp 236 (815)
+..+++.||+|+|||.+....
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i 45 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARAL 45 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHH
Confidence 568999999999999865443
No 414
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=49.52 E-value=8.6 Score=37.23 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=18.0
Q ss_pred HHHcCCCEEEEcCCChhHHHHHHHH
Q 036378 212 MVLDKKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 212 ~il~g~d~li~apTGsGKTl~~~lp 236 (815)
.+-.|+-+.++||+|+|||...-+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l 40 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCL 40 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHH
Confidence 4556888899999999999765433
No 415
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=49.29 E-value=43 Score=29.64 Aligned_cols=32 Identities=19% Similarity=-0.015 Sum_probs=30.1
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 646 DIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 646 ~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
...++|..+|++++.|...|..|+++|+|.-.
T Consensus 53 t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 53 SQKEIALWTKKDTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHCCCHhhHHHHHHHHHHCCCeecc
Confidence 57789999999999999999999999999876
No 416
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=49.10 E-value=12 Score=40.90 Aligned_cols=55 Identities=7% Similarity=-0.036 Sum_probs=44.4
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeCh
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TP 298 (815)
.++++||++|++.-+...++.|.+ ..+...+++. +....++.+..|..+|||+|.
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECc
Confidence 367899999999999999988876 5556666654 455677888899999999994
No 417
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=49.08 E-value=8.6 Score=41.32 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=18.9
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 4555667775 577899999999864
No 418
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=48.92 E-value=29 Score=31.72 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=30.7
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|+++|+|.-.
T Consensus 68 ~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 68 LTVGQLATLGVMEQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 467889999999999999999999999999877
No 419
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=48.75 E-value=13 Score=37.42 Aligned_cols=28 Identities=36% Similarity=0.326 Sum_probs=21.6
Q ss_pred HcCCCEEEEcCCChhHHHHHHHHHHHcC
Q 036378 214 LDKKSTMLVLPTGAGKSLCYQIPAMILP 241 (815)
Q Consensus 214 l~g~d~li~apTGsGKTl~~~lp~l~~~ 241 (815)
+.|+.++++|+.|+|||.+..+.+-..+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3489999999999999987665544333
No 420
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=48.47 E-value=6.9 Score=43.08 Aligned_cols=56 Identities=9% Similarity=-0.081 Sum_probs=38.5
Q ss_pred HcCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeCh
Q 036378 239 ILPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298 (815)
Q Consensus 239 ~~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TP 298 (815)
..++++||++|+++-+...++.|.. ++....+++ .+....++.+..|+.+|||+|.
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESS
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECC
Confidence 3478999999999999999999876 555666666 3455567778899999999994
No 421
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=48.43 E-value=9.9 Score=36.66 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=18.1
Q ss_pred HcCCCEEEEcCCChhHHHHHHHH
Q 036378 214 LDKKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 214 l~g~d~li~apTGsGKTl~~~lp 236 (815)
..|+-++++||+|||||......
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHH
Confidence 35778999999999999855443
No 422
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=48.22 E-value=26 Score=45.04 Aligned_cols=46 Identities=15% Similarity=-0.058 Sum_probs=34.6
Q ss_pred CCCEEEEcCCChhHHHHHHHHH---HHcCCcEEEEcccHHHHHHHHHhc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA---MILPGLTLVVCPLVALMIDQLRHL 261 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~---l~~~~~~lVl~P~~~L~~q~~~~l 261 (815)
|+.+.+.+|.|||||...+-.+ ...++.|++|.+-.+|-......+
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~ 1479 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKL 1479 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHc
Confidence 4678999999999997654333 345899999999888876664444
No 423
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=48.14 E-value=38 Score=31.30 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=30.1
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEE-EE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEIT-YE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~-~~ 677 (815)
....++|..+|++++.|.+.|+.|++.|+|. |.
T Consensus 18 ~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~ 51 (162)
T 3i4p_A 18 LAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRV 51 (162)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeece
Confidence 4788999999999999999999999999987 44
No 424
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=48.11 E-value=24 Score=31.46 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=30.5
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
....++|..+|++++.|...|..|+++|+|.-..
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 5788999999999999999999999999998763
No 425
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=48.07 E-value=14 Score=36.82 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=16.2
Q ss_pred CCEEEEcCCChhHHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~ 237 (815)
+.+++.||+|+|||......+
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 348999999999997654433
No 426
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=48.02 E-value=13 Score=36.24 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=19.0
Q ss_pred HHHHHHHHcC----CCEEEEcCCChhHHHHH
Q 036378 207 LEAIKMVLDK----KSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 207 ~~ai~~il~g----~d~li~apTGsGKTl~~ 233 (815)
..++..++.+ +.+++.||.|+|||..+
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3445555554 25889999999999654
No 427
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=47.98 E-value=50 Score=29.02 Aligned_cols=33 Identities=3% Similarity=0.030 Sum_probs=30.8
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.....+|..+|++++.|...|..|+++|+|.-.
T Consensus 51 ~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 51 VLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHCCCcchHHHHHHHHHHCCCEEee
Confidence 467889999999999999999999999999887
No 428
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=47.85 E-value=8.6 Score=40.91 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=19.8
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~~ 234 (815)
.|..+++|.+ +++.|+||||||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4556677875 4677999999998763
No 429
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=47.84 E-value=13 Score=39.00 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=24.2
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHH--c-------CCcEEEEcccH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMI--L-------PGLTLVVCPLV 251 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~--~-------~~~~lVl~P~~ 251 (815)
|.-+++.|++|+|||...+-.+.. . ++.++++.-..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 567899999999999654433332 1 45677776543
No 430
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=47.68 E-value=23 Score=29.45 Aligned_cols=34 Identities=9% Similarity=-0.057 Sum_probs=31.0
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
..+.++|..+|++++.|.+.|+.|...|+|....
T Consensus 44 ~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 44 RSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 3677899999999999999999999999998765
No 431
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=47.66 E-value=35 Score=33.60 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=39.9
Q ss_pred HHHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecC
Q 036378 626 DKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKD 680 (815)
Q Consensus 626 ~~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~ 680 (815)
+.+...|+.+. -..|.....+..+|..+|+++.-|+++|..|...|+|....+.
T Consensus 14 ~~l~~~I~~g~-l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g~ 67 (239)
T 1hw1_A 14 EYIIESIWNNR-FPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGK 67 (239)
T ss_dssp HHHHHHHHTTS-SCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred HHHHHHHHcCC-CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecCC
Confidence 33444444432 1234433479999999999999999999999999999988554
No 432
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=47.62 E-value=34 Score=39.82 Aligned_cols=78 Identities=10% Similarity=0.023 Sum_probs=60.2
Q ss_pred CcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhc--CCceEEEeChhhhhchhhhhhhhhcCcccE
Q 036378 242 GLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQV--GAIKVLFVSPERFLNADFLSIFTATSLISL 318 (815)
Q Consensus 242 ~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~--g~~~Ili~TPe~L~~~~~~~~~~~~~~i~~ 318 (815)
...+|+++++.-+....+.|.+ ......+++.+...++..+.+.... |..+|||+|.- ....+. + ++++
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi------~e~GlD-i-~v~~ 392 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA------IGMGLN-L-SIRR 392 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG------GGSSCC-C-CBSE
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH------HHCCcC-c-CccE
Confidence 3456778888888888888876 5678899999999999999999998 88999999952 222233 5 7888
Q ss_pred EEEeccccc
Q 036378 319 VVVDEAHCV 327 (815)
Q Consensus 319 lViDEaH~i 327 (815)
||+-.....
T Consensus 393 VI~~~~~k~ 401 (677)
T 3rc3_A 393 IIFYSLIKP 401 (677)
T ss_dssp EEESCSBC-
T ss_pred EEECCcccc
Confidence 888777654
No 433
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=47.45 E-value=42 Score=30.27 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=30.9
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|+++|+|...
T Consensus 59 ~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 59 KKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp BCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 467889999999999999999999999999887
No 434
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=47.36 E-value=41 Score=30.59 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=28.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 647 IPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 647 ~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
..++|..+|++++.|...+..|+++|+|.-.
T Consensus 49 ~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 49 QIQLAKAIGIEQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCeEee
Confidence 4679999999999999999999999999877
No 435
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=47.24 E-value=31 Score=31.16 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=30.5
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.....+|..+|++++.|...|..|++.|+|.-.
T Consensus 58 ~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 58 MMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 467899999999999999999999999999876
No 436
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=47.13 E-value=12 Score=34.28 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=15.1
Q ss_pred CEEEEcCCChhHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp 236 (815)
-+++.|++|||||......
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999865544
No 437
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=47.01 E-value=11 Score=35.30 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=16.7
Q ss_pred CEEEEcCCChhHHHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~l~ 239 (815)
-++++||+|+|||...-...+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999866544443
No 438
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=47.00 E-value=10 Score=35.97 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=18.7
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~ 239 (815)
+..++++|+.|||||.+....+-.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 567899999999999876554433
No 439
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=46.69 E-value=10 Score=40.68 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=19.7
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.+..+++|.+ +++.|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5666777875 467799999999875
No 440
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=46.62 E-value=10 Score=41.66 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=19.1
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4555667775 577899999999875
No 441
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=46.61 E-value=50 Score=29.20 Aligned_cols=33 Identities=9% Similarity=0.133 Sum_probs=30.8
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|+++|+|.-.
T Consensus 51 ~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 51 LNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 467889999999999999999999999999887
No 442
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=46.56 E-value=13 Score=44.12 Aligned_cols=75 Identities=17% Similarity=0.044 Sum_probs=57.4
Q ss_pred cCCcEEEEcccHHHHHHHHHhcC------------CCceeeeeccCCChHHHHHHHHHHh-----cCCceEEEeChhhhh
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLP------------PVIHGGFLSSSQRPEEVAETIRLIQ-----VGAIKVLFVSPERFL 302 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~------------~~~~~~~i~~~~~~~~~~~~~~~l~-----~g~~~Ili~TPe~L~ 302 (815)
.++.+||.+|++.-+...++.|. ..+....+++.+...+....++... .|..+|||+|.-.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ia-- 379 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIA-- 379 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHH--
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHH--
Confidence 37899999999999988888776 2456778899999999888888887 8999999999421
Q ss_pred chhhhhhhhhcCcccEEEE
Q 036378 303 NADFLSIFTATSLISLVVV 321 (815)
Q Consensus 303 ~~~~~~~~~~~~~i~~lVi 321 (815)
...+. +..+++||-
T Consensus 380 ----e~Gid-Ip~v~~VId 393 (773)
T 2xau_A 380 ----ETSLT-IDGIVYVVD 393 (773)
T ss_dssp ----HHTCC-CTTEEEEEE
T ss_pred ----HhCcC-cCCeEEEEe
Confidence 22222 567776653
No 443
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=46.44 E-value=7 Score=36.69 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=16.3
Q ss_pred CCCEEEEcCCChhHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~l 235 (815)
|.-+.++||.|||||..+-.
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 56678999999999986544
No 444
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=45.93 E-value=39 Score=29.91 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=30.7
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.....+|..+|++++.|...|..|+..|+|.-.
T Consensus 44 ~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 44 IIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 357889999999999999999999999999887
No 445
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=45.87 E-value=11 Score=35.59 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=16.1
Q ss_pred CCEEEEcCCChhHHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~ 237 (815)
.-++++||.|+|||...-..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 346789999999998655444
No 446
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=45.67 E-value=24 Score=26.49 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=28.9
Q ss_pred cchhHHHHHhCCCHHHHHHHHHHHHhcCcccEEec
Q 036378 569 LVKESASRKFDIKEEVMLTLLTCLELGEIQYLQLL 603 (815)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~i~~~ 603 (815)
++...++..|++..+.+..+|..|+ +.|+|++.
T Consensus 26 ldI~~~a~kygV~kdeV~~~LrrLe--~KGLI~le 58 (59)
T 2xvc_A 26 LDIEHFSKVYGVEKQEVVKLLEALK--NKGLIAVE 58 (59)
T ss_dssp EEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred EeHHHHHHHhCCCHHHHHHHHHHHH--HCCCeecc
Confidence 4577899999999999999999999 68888763
No 447
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=45.56 E-value=11 Score=36.28 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=18.0
Q ss_pred cCCCEEEEcCCChhHHHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~ 237 (815)
.|+-++++|+.|||||...-+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 36778899999999998655443
No 448
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=45.48 E-value=23 Score=32.36 Aligned_cols=47 Identities=11% Similarity=0.059 Sum_probs=38.2
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCceEEEEEeCCCch
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPAYCYTIVEVPSD 693 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~~~~~~~~~~~~ 693 (815)
+...++|...|+++.-|++.|..|.+.|+|.-..+ .-.|.+.++|.+
T Consensus 31 ~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG--~GGy~L~~~p~~ 77 (149)
T 1ylf_A 31 CTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG--PGGAGLLKDLHE 77 (149)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSCGGG
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC--CCceEeCCChhh
Confidence 57889999999999999999999999999887655 346777777654
No 449
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=45.42 E-value=47 Score=32.90 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=40.3
Q ss_pred hHHHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecC
Q 036378 625 KDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKD 680 (815)
Q Consensus 625 ~~~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~ 680 (815)
+..+...|+...- ..|... .+..+|..+|+++.-|++.|..|...|++....+.
T Consensus 32 ~~~L~~~I~~g~l-~pG~~L-~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~~ 85 (237)
T 3c7j_A 32 EEKLRNAIIDGSL-PSGTAL-RQQELATLFGVSRMPVREALRQLEAQSLLRVETHK 85 (237)
T ss_dssp HHHHHHHHHTSSS-CTTCBC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHhCCC-CCcCee-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 3444455554321 234433 89999999999999999999999999999988554
No 450
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=45.30 E-value=19 Score=34.42 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.3
Q ss_pred CCEEEEcCCChhHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCY 233 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~ 233 (815)
+-++++||.|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999754
No 451
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=45.26 E-value=39 Score=30.70 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=30.6
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.....+|..+|++++.|...|..|+++|+|.-.
T Consensus 67 ~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 67 LPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 367889999999999999999999999999877
No 452
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=44.97 E-value=10 Score=41.09 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=13.5
Q ss_pred CEEEEcCCChhHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 218 d~li~apTGsGKTl~~~ 234 (815)
-+++.||||+|||....
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 36788999999997543
No 453
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=44.95 E-value=44 Score=29.62 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=30.8
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|+..|+|.-.
T Consensus 51 ~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 51 KTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 368889999999999999999999999999877
No 454
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=44.87 E-value=1.2e+02 Score=27.08 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=30.6
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.....+|..+|++++.|...|..|+++|+|.-.
T Consensus 52 ~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~ 84 (147)
T 4b8x_A 52 LPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKR 84 (147)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEe
Confidence 457789999999999999999999999999877
No 455
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=44.66 E-value=30 Score=31.22 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=30.6
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.....+|..+|++++.|...|..|+++|+|.-.
T Consensus 62 ~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 62 RSVSEIGERLYLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 367889999999999999999999999999877
No 456
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=44.61 E-value=16 Score=41.02 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=33.8
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCCC-----ce--------eeeeccCCChHHHHHHHHHHhc-CCceEEEeChhhhhchh
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPPV-----IH--------GGFLSSSQRPEEVAETIRLIQV-GAIKVLFVSPERFLNAD 305 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~~-----~~--------~~~i~~~~~~~~~~~~~~~l~~-g~~~Ili~TPe~L~~~~ 305 (815)
.+.++||.++++.-+....+.|... ++ ...++++++..++...++.... |.++|||+|. .
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-~----- 462 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-V----- 462 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-c-----
Confidence 3689999999999999999988652 12 1233456777888889999998 9999999993 1
Q ss_pred hhhhhhhcCcccEEEEec
Q 036378 306 FLSIFTATSLISLVVVDE 323 (815)
Q Consensus 306 ~~~~~~~~~~i~~lViDE 323 (815)
....+. +..+++||.=+
T Consensus 463 ~~~GiD-ip~v~~VI~~d 479 (556)
T 4a2p_A 463 ADEGID-IVQCNLVVLYE 479 (556)
T ss_dssp -----------CEEEEET
T ss_pred hhcCCC-chhCCEEEEeC
Confidence 122233 66788888643
No 457
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=44.40 E-value=14 Score=38.00 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=21.3
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHcCCcEEEEcc
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMILPGLTLVVCP 249 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~P 249 (815)
.-+++.||.|||||......+-..+...++|+.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 457889999999998654433333334555554
No 458
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=44.36 E-value=15 Score=33.76 Aligned_cols=20 Identities=20% Similarity=-0.051 Sum_probs=15.5
Q ss_pred CEEEEcCCChhHHHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 218 d~li~apTGsGKTl~~~lp~ 237 (815)
-+++.|+.|||||.+....+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999998665443
No 459
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=44.18 E-value=13 Score=34.70 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=17.1
Q ss_pred CCCEEEEcCCChhHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~ 237 (815)
|..++++|+.|||||...-..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 5568899999999998655443
No 460
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=44.17 E-value=47 Score=26.53 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=33.7
Q ss_pred eCHHHHHHHc-----CCCHHHHHHHHHHHHHcCcEEEEec-CceEEEE
Q 036378 645 FDIPTVANSI-----GATTIDVSNQLLNLKMRGEITYELK-DPAYCYT 686 (815)
Q Consensus 645 ~~~~~~a~~~-----g~~~~~v~~~l~~l~~~g~i~~~~~-~~~~~~~ 686 (815)
+.+.+++..+ +++.+.|.+.|..|.+.|++.-... +....|.
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~ 81 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFE 81 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEee
Confidence 5778888888 9999999999999999999987643 3334443
No 461
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=44.10 E-value=18 Score=36.79 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=16.3
Q ss_pred CCEEEEcCCChhHHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~ 237 (815)
+.+++.||+|+|||......+
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHH
Confidence 348999999999997654443
No 462
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=43.96 E-value=9 Score=37.77 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=12.6
Q ss_pred cCCCEEEEcCCChhHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~l 235 (815)
.|+-+.++||+|+|||...-+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp CCCEEEEECSCC----CHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 366788999999999975443
No 463
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=43.78 E-value=12 Score=35.27 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=17.3
Q ss_pred CCCEEEEcCCChhHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~ 237 (815)
+.-+++.|+.|||||......+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5678899999999998655443
No 464
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=43.75 E-value=9 Score=41.31 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=18.7
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 3445667775 567799999999875
No 465
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=43.69 E-value=32 Score=31.50 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=30.9
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|+++|+|.-.
T Consensus 61 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 93 (162)
T 3k0l_A 61 LSNAKLAERSFIKPQSANKILQDLLANGWIEKA 93 (162)
T ss_dssp CCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEec
Confidence 467889999999999999999999999999887
No 466
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=43.21 E-value=8 Score=38.40 Aligned_cols=72 Identities=21% Similarity=0.190 Sum_probs=46.3
Q ss_pred ccceEEEecchHHHHHHHHHHhhC----CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccc-----ccc---ccccC
Q 036378 422 HYYILQISGKHFETDLISRYLCDN----SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA-----FGM---GLDKR 489 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~----g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~-----~~~---GID~p 489 (815)
+.++++.+.++.-+.++++.+.+. ++.+..++++.....+ ......+..+|+|+|.- +.. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 446888899999999888888763 6777777765432211 12233567789999942 111 35566
Q ss_pred CccEEEE
Q 036378 490 DVGAVIH 496 (815)
Q Consensus 490 ~v~~VI~ 496 (815)
++++||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 6666654
No 467
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=43.17 E-value=43 Score=29.94 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=30.7
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|+..|+|.-.
T Consensus 55 ~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 55 ATAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 367889999999999999999999999999887
No 468
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=43.16 E-value=43 Score=31.68 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=30.8
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.....+|..+|++++.|...|..|+++|+|.-.
T Consensus 58 ~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 58 TTLNNIARKMGTSKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 367889999999999999999999999999887
No 469
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=43.13 E-value=37 Score=39.63 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=50.7
Q ss_pred HHHcCCcEEEEcccHHHHHHHHHhcCCC-------------------------------ceeeeeccCCChHHHHHHHHH
Q 036378 237 AMILPGLTLVVCPLVALMIDQLRHLPPV-------------------------------IHGGFLSSSQRPEEVAETIRL 285 (815)
Q Consensus 237 ~l~~~~~~lVl~P~~~L~~q~~~~l~~~-------------------------------~~~~~i~~~~~~~~~~~~~~~ 285 (815)
.+..++.+||.+|++.-+......+... .....+++++...++....+.
T Consensus 238 ~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 317 (702)
T 2p6r_A 238 CVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDA 317 (702)
T ss_dssp HHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHH
T ss_pred HHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHH
Confidence 4456899999999999888777666431 135668899999999999999
Q ss_pred HhcCCceEEEeCh
Q 036378 286 IQVGAIKVLFVSP 298 (815)
Q Consensus 286 l~~g~~~Ili~TP 298 (815)
...|..+|||+|.
T Consensus 318 f~~g~~~vlvaT~ 330 (702)
T 2p6r_A 318 FRRGNIKVVVATP 330 (702)
T ss_dssp HHTTSCCEEEECS
T ss_pred HHCCCCeEEEECc
Confidence 9999999999995
No 470
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=42.96 E-value=13 Score=50.15 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.8
Q ss_pred HHcCCCEEEEcCCChhHHHHHHHHH
Q 036378 213 VLDKKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 213 il~g~d~li~apTGsGKTl~~~lp~ 237 (815)
+.....++++||||||||.++.+.+
T Consensus 920 ~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 920 QKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHhcceEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999987665
No 471
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=42.66 E-value=40 Score=37.64 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=17.5
Q ss_pred CCEEEEcCCChhHHHHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~ 239 (815)
+.++++||+|+|||+.....+-.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999876544433
No 472
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=42.64 E-value=15 Score=38.47 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=18.2
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMI 239 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~ 239 (815)
...+++.||+|+|||......+-.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHh
Confidence 457999999999999866544433
No 473
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=42.59 E-value=51 Score=36.76 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=21.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc
Q 036378 647 IPTVANSIGATTIDVSNQLLNLKMR 671 (815)
Q Consensus 647 ~~~~a~~~g~~~~~v~~~l~~l~~~ 671 (815)
...+|.+.|.+..+|.+.|.+....
T Consensus 403 ~~ria~gsg~~~~~v~~ll~~~~~~ 427 (504)
T 2j37_W 403 IQRVARGSGVSTRDVQELLTQYTKF 427 (504)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5679999999999999999988763
No 474
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=42.45 E-value=11 Score=36.17 Aligned_cols=23 Identities=17% Similarity=-0.005 Sum_probs=17.5
Q ss_pred cCCCEEEEcCCChhHHHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp~ 237 (815)
.|.-+.+.||.|||||......+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35677899999999997654443
No 475
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=42.32 E-value=17 Score=33.58 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=19.3
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHcC
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMILP 241 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~~ 241 (815)
+.+++.|+.|||||.+....+-..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999987766554444
No 476
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=42.25 E-value=37 Score=33.53 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=40.1
Q ss_pred hHHHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEE--Eec
Q 036378 625 KDKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITY--ELK 679 (815)
Q Consensus 625 ~~~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~--~~~ 679 (815)
+..+...|+.+. -..|.....+..+|..+|+++.-|+.+|..|...|+|.. ..+
T Consensus 10 ~~~L~~~I~~g~-l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~ 65 (239)
T 2di3_A 10 MDWVTEELRSGR-LKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSG 65 (239)
T ss_dssp HHHHHHHHHHTS-SCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTS
T ss_pred HHHHHHHHHhCC-CCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccC
Confidence 344555555442 123444446889999999999999999999999999998 544
No 477
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=42.24 E-value=1.9e+02 Score=32.39 Aligned_cols=97 Identities=11% Similarity=0.187 Sum_probs=55.2
Q ss_pred HHhCCCHHHHHHHHHHHHhcCcccEEeccc-cccceEEEecCCchhhhhhhHHHHHHHHhh-CCc----------CCcee
Q 036378 576 RKFDIKEEVMLTLLTCLELGEIQYLQLLPE-LKVTCTLNFHKTTPTLLADKDKMVATILKK-SET----------KQGQY 643 (815)
Q Consensus 576 ~~~~~~~~~~~~~l~~le~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~-~~~----------~~~~~ 643 (815)
..+++..+.+...|..|.....+++..... ......+.|..--..+ ....+..++.. +.. ..+
T Consensus 299 ~~~~l~~~~l~~~L~lL~~~~~~fv~~~g~~g~g~y~V~~~~~~~~l---r~~~ie~ii~~~~G~~a~RI~r~L~~~~-- 373 (534)
T 2xub_A 299 VGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASL---ATATLESVVQERFGSRCARIFRLVLQKK-- 373 (534)
T ss_dssp TTCCCCHHHHHHHHHHHHSCTTCCEEECCCCSSCEEEEBHHHHHHHH---HHHHHHHHHHHHHCHHHHHHHHHHHHC---
T ss_pred CcccccHHHHHHHHHHHhCCcHHhhhccccCCCceEEEeHHHHHHHH---HHHHHHHHHHHHhChHHHHHHHHHHHcC--
Confidence 345778888888888888666667664322 1223334332111111 11112111111 000 011
Q ss_pred eeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 644 VFDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 644 ~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.++..++|..++++..++++.|..|...|++.|.
T Consensus 374 ~l~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~q 407 (534)
T 2xub_A 374 HIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQ 407 (534)
T ss_dssp --CHHHHHHHHCSCHHHHHHHHHHHHHTTCC---
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEE
Confidence 3688999999999999999999999999999998
No 478
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=42.15 E-value=42 Score=34.52 Aligned_cols=68 Identities=9% Similarity=-0.025 Sum_probs=46.4
Q ss_pred ccceEEEecchHHHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEcccc------c-cccccC
Q 036378 422 HYYILQISGKHFETDLISRYLCDN-----SISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVAF------G-MGLDKR 489 (815)
Q Consensus 422 ~~~~ivf~~s~~~~e~l~~~L~~~-----g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~~------~-~GID~p 489 (815)
...+++++.++.-+.++++.+... ++.+..++|+.....+. ....+|||+|.-- . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 446888899999999988777652 57788888876532211 3566899999742 1 245666
Q ss_pred CccEEEE
Q 036378 490 DVGAVIH 496 (815)
Q Consensus 490 ~v~~VI~ 496 (815)
++++||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 7777664
No 479
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=42.02 E-value=17 Score=38.40 Aligned_cols=36 Identities=11% Similarity=-0.069 Sum_probs=24.4
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHH---------cCCcEEEEcccH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMI---------LPGLTLVVCPLV 251 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~---------~~~~~lVl~P~~ 251 (815)
|.-+++.||+|+|||...+-.+.. .++.++++.-..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 556789999999999654433332 256677776543
No 480
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=41.92 E-value=9.6 Score=35.86 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=17.4
Q ss_pred CCCEEEEcCCChhHHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~ 237 (815)
|..+++.|+.|||||......+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5568899999999998665544
No 481
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=41.91 E-value=16 Score=42.48 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=45.4
Q ss_pred cCCcEEEEcccHHHHHHHHHhcCC-CceeeeeccCCChHHHHHHHHHHhcCCceEEEeCh
Q 036378 240 LPGLTLVVCPLVALMIDQLRHLPP-VIHGGFLSSSQRPEEVAETIRLIQVGAIKVLFVSP 298 (815)
Q Consensus 240 ~~~~~lVl~P~~~L~~q~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~l~~g~~~Ili~TP 298 (815)
.++++||++|++.-+...++.|.+ .++...+++ .++...++.+..|+.+|||+|.
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTd 464 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTD 464 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCSEEEECG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCceEEEECc
Confidence 467899999999999999999987 556666666 3566677888899999999993
No 482
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=41.78 E-value=60 Score=32.36 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=40.4
Q ss_pred HHHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEecCce
Q 036378 626 DKMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLLNLKMRGEITYELKDPA 682 (815)
Q Consensus 626 ~~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~~~~ 682 (815)
+.+...|. .+ ..|.....+.++|...|+++..|+++|..|...|+|.- .+...
T Consensus 21 ~~l~~~I~-~~--~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~-~g~Gt 73 (248)
T 3f8m_A 21 AELDRMLD-GM--RIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER-RGRTT 73 (248)
T ss_dssp HHHHHHHH-HC--CTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-ETTEE
T ss_pred HHHHHHHh-CC--CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-CCCEE
Confidence 34444444 33 34554558999999999999999999999999999988 66543
No 483
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=41.59 E-value=8 Score=40.63 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=21.4
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcCCcEEEEc
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILPGLTLVVC 248 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~~~~lVl~ 248 (815)
|..+++.||+|+|||...+..+...+..++++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs 155 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYAT 155 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 667899999999999654433333344444443
No 484
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=41.54 E-value=11 Score=40.60 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEcCCChhHHHHH
Q 036378 209 AIKMVLDKKS--TMLVLPTGAGKSLCY 233 (815)
Q Consensus 209 ai~~il~g~d--~li~apTGsGKTl~~ 233 (815)
.|..+++|.+ +++.|+||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4555666775 567799999999875
No 485
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=41.36 E-value=14 Score=36.46 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=17.4
Q ss_pred HcCCCEEEEcCCChhHHHHHHH
Q 036378 214 LDKKSTMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 214 l~g~d~li~apTGsGKTl~~~l 235 (815)
-.|+-++++||.|+|||...-+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3577889999999999986544
No 486
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=41.34 E-value=17 Score=34.73 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=16.6
Q ss_pred CCEEEEcCCChhHHHHHHHHH
Q 036378 217 KSTMLVLPTGAGKSLCYQIPA 237 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~ 237 (815)
.-+++.|+.|||||......+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998665443
No 487
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=41.33 E-value=56 Score=29.26 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=30.6
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
.....+|..+|++++.|...|..|+..|+|.-.
T Consensus 52 ~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 52 LKVSEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 467889999999999999999999999999877
No 488
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=41.29 E-value=13 Score=34.49 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=14.4
Q ss_pred CEEEEcCCChhHHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQI 235 (815)
Q Consensus 218 d~li~apTGsGKTl~~~l 235 (815)
-+++.|+.|||||.....
T Consensus 4 ~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 467899999999986543
No 489
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=41.17 E-value=17 Score=35.51 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=19.0
Q ss_pred CCCEEEEcCCChhHHHHHHHHHHHcC
Q 036378 216 KKSTMLVLPTGAGKSLCYQIPAMILP 241 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp~l~~~ 241 (815)
+.-+++.|++|||||......+-..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999986654443333
No 490
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=41.17 E-value=15 Score=33.70 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.0
Q ss_pred CEEEEcCCChhHHHHHH
Q 036378 218 STMLVLPTGAGKSLCYQ 234 (815)
Q Consensus 218 d~li~apTGsGKTl~~~ 234 (815)
-.+++||+|+|||...-
T Consensus 25 ~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46899999999997643
No 491
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=41.08 E-value=29 Score=31.02 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=31.4
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEe
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYEL 678 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~ 678 (815)
..+..+|..+|++++.|.+.|..|+..|+|....
T Consensus 23 ~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 23 ARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEee
Confidence 4788999999999999999999999999998763
No 492
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=40.92 E-value=14 Score=41.50 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=17.9
Q ss_pred cCCCEEEEcCCChhHHHHHHHH
Q 036378 215 DKKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 215 ~g~d~li~apTGsGKTl~~~lp 236 (815)
.+.++++.|+||||||.+....
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~l 187 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAM 187 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHH
Confidence 3679999999999999875433
No 493
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=40.57 E-value=21 Score=33.38 Aligned_cols=25 Identities=32% Similarity=0.204 Sum_probs=18.2
Q ss_pred CCEEEEcCCChhHHHHHHHHHHHcC
Q 036378 217 KSTMLVLPTGAGKSLCYQIPAMILP 241 (815)
Q Consensus 217 ~d~li~apTGsGKTl~~~lp~l~~~ 241 (815)
..+++.|+.|||||.+....+-..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4588999999999987655443333
No 494
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=40.40 E-value=22 Score=31.71 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=26.8
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
....++|..+|++++.|...|..|+++|+|.-.
T Consensus 52 ~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 52 LNLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp CCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeec
Confidence 367889999999999999999999999999876
No 495
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=40.34 E-value=27 Score=31.45 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=29.5
Q ss_pred eCHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEE
Q 036378 645 FDIPTVANSIGATTIDVSNQLLNLKMRGEITYE 677 (815)
Q Consensus 645 ~~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~ 677 (815)
+...++|..+|++++.|...|..|+++|+|.-.
T Consensus 55 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 55 VNQRGVAATMGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp CCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred cCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 356789999999999999999999999999865
No 496
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=40.29 E-value=1.4e+02 Score=29.11 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=30.6
Q ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHcCcEEEEec
Q 036378 646 DIPTVANSIGATTIDVSNQLLNLKMRGEITYELK 679 (815)
Q Consensus 646 ~~~~~a~~~g~~~~~v~~~l~~l~~~g~i~~~~~ 679 (815)
....+|..+|++++.|...|..|+++|+|.+...
T Consensus 26 ~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (226)
T 2qq9_A 26 LRARIAERLEQSGPTVSQTVARMERDGLVVVASD 59 (226)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3478999999999999999999999999998743
No 497
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=40.22 E-value=14 Score=38.81 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=34.3
Q ss_pred HHHHHHHhhCCcCCceeeeCHHHHHHHcCCCHHHHHHHHH-HHHHcCcEEEEe
Q 036378 627 KMVATILKKSETKQGQYVFDIPTVANSIGATTIDVSNQLL-NLKMRGEITYEL 678 (815)
Q Consensus 627 ~~~~~~lr~~~~~~~~~~~~~~~~a~~~g~~~~~v~~~l~-~l~~~g~i~~~~ 678 (815)
.++.++..... .+ .+.+.++|..+|.++..+..+.. +|...|+|.-..
T Consensus 263 ~~l~~~~~~~~--~~--~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~ 311 (334)
T 1in4_A 263 KILKTIIEIYR--GG--PVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTP 311 (334)
T ss_dssp HHHHHHHHHST--TC--CBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEET
T ss_pred HHHHHHHHHhC--CC--cchHHHHHHHhCCCcchHHHHHHHHHHHcCCeeccc
Confidence 45566555531 11 23677999999999988887777 899999887663
No 498
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=40.15 E-value=33 Score=35.46 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=15.3
Q ss_pred CCCEEEEcCCChhHHHHHHHH
Q 036378 216 KKSTMLVLPTGAGKSLCYQIP 236 (815)
Q Consensus 216 g~d~li~apTGsGKTl~~~lp 236 (815)
|.-+.+.||.|||||...-+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L 100 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVL 100 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 335668899999999765433
No 499
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=40.11 E-value=70 Score=37.87 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=52.0
Q ss_pred hccccceEEEecchHHHHHHHHHHh----hCCCcEEEecCCCCHHHHHHHHHHHhcCCceEEEEccc-cc-----cc---
Q 036378 419 SSKHYYILQISGKHFETDLISRYLC----DNSISVKSYHSGIPAKDRSRIQELFCSNKIRVVVATVA-FG-----MG--- 485 (815)
Q Consensus 419 ~~~~~~~ivf~~s~~~~e~l~~~L~----~~g~~v~~~h~~~~~~~R~~i~~~F~~g~~~VLVaT~~-~~-----~G--- 485 (815)
.+.+..++|.+.|+.-|..+++.+. ..|+.+..+.||++..+|.... .++|+|+|+. ++ .+
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~ 185 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAF 185 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhc
Confidence 3456789999999988877666554 4699999999999987665443 3789999974 21 22
Q ss_pred ----cccCCccEEEE
Q 036378 486 ----LDKRDVGAVIH 496 (815)
Q Consensus 486 ----ID~p~v~~VI~ 496 (815)
++..++.++|.
T Consensus 186 ~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 186 SPEERVQRKLHYALV 200 (853)
T ss_dssp SGGGCCCCSCCEEEE
T ss_pred cHhHhcccCCcEEEE
Confidence 45567777664
No 500
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=40.05 E-value=20 Score=41.10 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=20.6
Q ss_pred HHcCCCEEEEcCCChhHHHHHHHHHH
Q 036378 213 VLDKKSTMLVLPTGAGKSLCYQIPAM 238 (815)
Q Consensus 213 il~g~d~li~apTGsGKTl~~~lp~l 238 (815)
+..|..+++.||+|+|||......+-
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 44688999999999999987655443
Done!