Query 036381
Match_columns 235
No_of_seqs 178 out of 1302
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 12:08:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 6.2E-49 1.3E-53 328.1 14.9 206 1-231 10-228 (238)
2 COG0580 GlpF Glycerol uptake f 100.0 4.1E-46 8.9E-51 310.2 17.3 213 2-229 5-240 (241)
3 PRK05420 aquaporin Z; Provisio 100.0 2.3E-45 5E-50 308.4 19.4 215 1-231 1-230 (231)
4 PLN00184 aquaporin NIP1; Provi 100.0 1.1E-45 2.5E-50 318.9 17.2 210 1-231 53-275 (296)
5 PTZ00016 aquaglyceroporin; Pro 100.0 2.2E-44 4.8E-49 311.5 18.4 216 1-231 49-292 (294)
6 KOG0224 Aquaporin (major intri 100.0 1.2E-44 2.5E-49 304.8 13.2 220 1-233 31-279 (316)
7 PLN00026 aquaporin NIP; Provi 100.0 3.9E-44 8.5E-49 308.7 15.2 202 1-231 70-284 (298)
8 PF00230 MIP: Major intrinsic 100.0 5.5E-44 1.2E-48 300.2 12.0 202 1-224 7-227 (227)
9 PLN00182 putative aquaporin NI 100.0 4E-43 8.6E-48 301.3 16.7 201 1-229 41-254 (283)
10 PLN00166 aquaporin TIP2; Provi 100.0 8.1E-43 1.7E-47 295.6 18.0 204 2-231 18-239 (250)
11 PLN00027 aquaporin TIP; Provis 100.0 2.8E-42 6.1E-47 293.2 16.6 202 2-229 20-239 (252)
12 PLN00167 aquaporin TIP5; Provi 100.0 3E-41 6.5E-46 286.8 18.9 203 1-230 21-241 (256)
13 cd00333 MIP Major intrinsic pr 100.0 2E-41 4.4E-46 284.8 16.5 213 3-227 1-228 (228)
14 PLN00183 putative aquaporin NI 100.0 5.3E-41 1.1E-45 287.2 15.3 203 2-233 45-260 (274)
15 TIGR00861 MIP MIP family chann 100.0 1.6E-38 3.5E-43 265.1 13.5 198 7-224 1-216 (216)
16 PLN00026 aquaporin NIP; Provi 99.7 1.2E-16 2.6E-21 138.3 8.8 108 118-231 67-174 (298)
17 PLN00184 aquaporin NIP1; Provi 99.6 3.3E-16 7.2E-21 135.7 7.6 107 118-230 50-156 (296)
18 PLN00183 putative aquaporin NI 99.6 2.6E-15 5.6E-20 128.9 8.9 107 118-230 41-147 (274)
19 PLN00166 aquaporin TIP2; Provi 99.6 2.2E-15 4.7E-20 128.1 7.1 108 119-230 15-125 (250)
20 PLN00167 aquaporin TIP5; Provi 99.6 6.2E-15 1.3E-19 125.7 8.6 109 119-230 19-129 (256)
21 PLN00182 putative aquaporin NI 99.5 1.4E-14 3E-19 124.9 8.1 104 119-229 39-143 (283)
22 PLN00027 aquaporin TIP; Provis 99.5 2E-14 4.3E-19 122.5 7.6 109 119-230 17-127 (252)
23 PTZ00016 aquaglyceroporin; Pro 99.5 1.2E-14 2.5E-19 126.3 6.2 106 119-231 47-153 (294)
24 PRK05420 aquaporin Z; Provisio 99.5 3E-14 6.5E-19 119.9 7.9 103 122-229 2-104 (231)
25 cd00333 MIP Major intrinsic pr 99.5 2.1E-14 4.5E-19 120.8 6.1 102 123-231 1-104 (228)
26 TIGR00861 MIP MIP family chann 99.5 1.1E-13 2.3E-18 115.6 6.8 102 127-232 1-105 (216)
27 COG0580 GlpF Glycerol uptake f 99.4 1.1E-13 2.3E-18 116.0 5.0 111 120-233 3-113 (241)
28 KOG0223 Aquaporin (major intri 99.3 2.7E-12 6E-17 107.7 7.7 108 118-231 7-114 (238)
29 KOG0224 Aquaporin (major intri 99.3 2.2E-13 4.7E-18 115.8 1.0 106 119-231 29-136 (316)
30 PF00230 MIP: Major intrinsic 99.2 7.8E-12 1.7E-16 105.0 5.6 109 119-230 5-116 (227)
31 COG2116 FocA Formate/nitrite f 56.1 1E+02 0.0023 26.5 8.7 165 53-234 93-263 (265)
32 PF03033 Glyco_transf_28: Glyc 54.6 5.2 0.00011 29.9 0.6 22 41-62 5-26 (139)
33 PRK12446 undecaprenyldiphospho 34.1 14 0.00031 32.9 0.1 23 39-61 6-28 (352)
34 PF13940 Ldr_toxin: Toxin Ldr, 28.0 78 0.0017 18.2 2.4 21 210-230 14-34 (35)
35 PF01925 TauE: Sulfite exporte 25.8 1.7E+02 0.0037 23.9 5.4 27 60-86 59-85 (240)
36 PF04632 FUSC: Fusaric acid re 25.0 6.1E+02 0.013 24.2 14.1 30 62-91 384-413 (650)
37 PF11085 YqhR: Conserved membr 24.2 2.3E+02 0.005 22.8 5.4 59 160-230 29-94 (173)
38 PF08370 PDR_assoc: Plant PDR 23.6 1.4E+02 0.0031 19.9 3.5 24 189-212 9-32 (65)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-49 Score=328.05 Aligned_cols=206 Identities=35% Similarity=0.559 Sum_probs=172.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhcccC--Cch-----------hhHhHHHhhcCccccccchHHHHHHHHhccCCccch
Q 036381 1 VWRASLTEVLGTALLVFALDTIVISSIQ--TDT-----------IIAILLLATFPISGGHINPLVTFSAALIGHMTVTRA 67 (235)
Q Consensus 1 ~~r~~~~Ef~gT~~lv~~~~~~~~~~~~--~~~-----------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~ 67 (235)
++|++++||++|++++|.+|+....+.. ... .+++.+++++++||||+|||||+++++.|++++.+.
T Consensus 10 ~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl~~~ 89 (238)
T KOG0223|consen 10 FLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGKISLFRA 89 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCCCcHHHh
Confidence 4799999999999999998877654441 111 678899999999999999999999999999999999
Q ss_pred hhheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHhhcch
Q 036381 68 AIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDER 147 (235)
Q Consensus 68 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~~~~~ 147 (235)
+.|+++|++|+++|+.+++.+.+++.... .... +.+. .+.+..|++..|++.||+|+++++..+.|+|
T Consensus 90 ~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~-~~~~-------~~~~----~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~ 157 (238)
T KOG0223|consen 90 VAYIVAQLLGAIAGAALLKVVTPGQYNRK-GLGL-------TGLA----PGLSTGQGLVIEIILTFILVFTVFATATDPR 157 (238)
T ss_pred HHHHHHHHHHHHHHHHHHheecCcccccC-Ccce-------eccC----CCCCcchhHHHHHHHHHHHhheeEEEeecCC
Confidence 99999999999999999999999862111 1111 1222 2689999999999999999999998788888
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHHHHHHHh
Q 036381 148 QAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLI 227 (235)
Q Consensus 148 ~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l 227 (235)
++ .+.|+.+|+++.+.++..+ ++||++|||||+|||+++.+ .|++|||||+||++|+++++++||++
T Consensus 158 ~~-----~~a~l~IG~~v~~~~l~~g------~~TG~sMNPArSfGpAvv~~--~w~~hwiYwvgP~~Ga~~a~~~y~~v 224 (238)
T KOG0223|consen 158 RS-----ELAPLAIGFSVGLNILAAG------PFTGASMNPARSFGPAVVYG--SWDDHWIYWVGPLLGAILAALIYRLV 224 (238)
T ss_pred Cc-----ccHHHHHHHHHHHHHHeec------CcCcCccCcHHHhhHHHHhc--CCCcEEEEEhhHHHHHHHHHHHHHHh
Confidence 76 2347777777777666543 89999999999999999987 69999999999999999999999988
Q ss_pred cCCC
Q 036381 228 PSQH 231 (235)
Q Consensus 228 ~~~~ 231 (235)
..+.
T Consensus 225 ~~~~ 228 (238)
T KOG0223|consen 225 FIPD 228 (238)
T ss_pred ccCc
Confidence 7654
No 2
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-46 Score=310.24 Aligned_cols=213 Identities=26% Similarity=0.313 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccc--C---Cch-----------hhHhHHHhhcCccccccchHHHHHHHHhccCCcc
Q 036381 2 WRASLTEVLGTALLVFALDTIVISSI--Q---TDT-----------IIAILLLATFPISGGHINPLVTFSAALIGHMTVT 65 (235)
Q Consensus 2 ~r~~~~Ef~gT~~lv~~~~~~~~~~~--~---~~~-----------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~ 65 (235)
.|++++||+||++|++.++++..... . ... .+.+.+|+++++||+|+|||||+++++.|+++|+
T Consensus 5 ~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp~~ 84 (241)
T COG0580 5 TKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFPWR 84 (241)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCCHH
Confidence 58999999999999998877653322 1 110 7888999999999999999999999999999999
Q ss_pred chhhheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHhhc
Q 036381 66 RAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFD 145 (235)
Q Consensus 66 ~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~~~ 145 (235)
+++.|+++|++||++|+.+++.+++++..+.++.....++.+++.|.. .+..++++.|+++|++|++.++....|
T Consensus 85 ~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~-----~~~~~~fl~E~v~T~~L~~~Ila~~~~ 159 (241)
T COG0580 85 KVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGG-----YSLGQAFLIEFVGTFVLVLGILALTDD 159 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCc-----ccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999998877753334457778888884 488999999999999999999876655
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhh---C----CCCCCceeeeehhHHHHHH
Q 036381 146 ERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVR---G----GHLWDRHWVFWAGPATACV 218 (235)
Q Consensus 146 ~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~---g----~~~~~~~wvy~v~p~~Ga~ 218 (235)
++. +....|+.+|+.+....+.. + +.||.++|||||||||+.. + +.+++|.|+||++|++|++
T Consensus 160 ~~~----~~~~apl~iGllv~~i~~s~----g--~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~ 229 (241)
T COG0580 160 GNA----NAGFAPLAIGLLVTAIGLSL----G--PTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAI 229 (241)
T ss_pred Ccc----cccchHHHHHHHHHHHHHHh----c--CCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHH
Confidence 544 11245777777776644433 2 7899999999999999954 3 1123699999999999999
Q ss_pred HHHHHHHHhcC
Q 036381 219 AFALYIKLIPS 229 (235)
Q Consensus 219 ~a~~~~~~l~~ 229 (235)
+++++||.+..
T Consensus 230 lg~~~~~~~~~ 240 (241)
T COG0580 230 LGALLYKLLLG 240 (241)
T ss_pred HHHHHHHHHcc
Confidence 99999997654
No 3
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=2.3e-45 Score=308.38 Aligned_cols=215 Identities=26% Similarity=0.360 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhcc-c-C--C-ch---------hhHhHHHhhcCccccccchHHHHHHHHhccCCccc
Q 036381 1 VWRASLTEVLGTALLVFALDTIVISS-I-Q--T-DT---------IIAILLLATFPISGGHINPLVTFSAALIGHMTVTR 66 (235)
Q Consensus 1 ~~r~~~~Ef~gT~~lv~~~~~~~~~~-~-~--~-~~---------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~ 66 (235)
++|++++||+||++|+|.+++..... . . . +. .+++.+++++++||+|+|||||+++++.|+++|++
T Consensus 1 ~~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~ 80 (231)
T PRK05420 1 MFKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKE 80 (231)
T ss_pred ChHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHH
Confidence 47999999999999999887754221 1 1 1 11 56778899999999999999999999999999999
Q ss_pred hhhheeccchhHHHhhhhhhhhcccchhhhhc-CCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHhhc
Q 036381 67 AAIYILAQCVGGVFGALAPKAVVSTKIEHAFS-LGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFD 145 (235)
Q Consensus 67 ~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~~~ 145 (235)
.+.|+++|++||++|+.+++.+++++...... ...++.+...+.|+ +.+..++++.|+++|++|+++++.. .|
T Consensus 81 ~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~E~v~T~iLv~~i~~~-~~ 154 (231)
T PRK05420 81 LVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPG-----GYSLLAALVCEVVLTAFFLLVILGA-TD 154 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCC-----cccHHHHHHHHHHHHHHHHHHHHHH-hC
Confidence 99999999999999999999887653211100 00111111112332 3578999999999999999998864 55
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHHHHHH
Q 036381 146 ERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIK 225 (235)
Q Consensus 146 ~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~ 225 (235)
+++.+ ...|+.+|+.+....+... ++||++|||||||||++++|+..|+++|+||++|++|+++++++||
T Consensus 155 ~~~~~----~~~p~~iGl~v~~~~~~~~------~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~ 224 (231)
T PRK05420 155 KRAPA----GFAPIAIGLALTLIHLISI------PVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYR 224 (231)
T ss_pred CCCCC----cchHHHHHHHHHHHHHHhh------ccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHH
Confidence 54322 1346777777766555442 8899999999999999998755567999999999999999999999
Q ss_pred HhcCCC
Q 036381 226 LIPSQH 231 (235)
Q Consensus 226 ~l~~~~ 231 (235)
++.+++
T Consensus 225 ~l~~~~ 230 (231)
T PRK05420 225 LLLEKD 230 (231)
T ss_pred HHhccC
Confidence 987764
No 4
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=1.1e-45 Score=318.85 Aligned_cols=210 Identities=25% Similarity=0.397 Sum_probs=164.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhcccCC----ch---------hhHhHHHhhcCccccccchHHHHHHHHhccCCccch
Q 036381 1 VWRASLTEVLGTALLVFALDTIVISSIQT----DT---------IIAILLLATFPISGGHINPLVTFSAALIGHMTVTRA 67 (235)
Q Consensus 1 ~~r~~~~Ef~gT~~lv~~~~~~~~~~~~~----~~---------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~ 67 (235)
++|++++||+||++|+|.+++....+... +. ++++.+++++++||+|+|||||+++++.|+++|.+.
T Consensus 53 ~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~~~~ 132 (296)
T PLN00184 53 FLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQV 132 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCCHHHH
Confidence 36899999999999999988765332211 11 577888999999999999999999999999999999
Q ss_pred hhheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHhhcch
Q 036381 68 AIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDER 147 (235)
Q Consensus 68 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~~~~~ 147 (235)
+.|+++|++||++|+++++.+++.+..+.. +.. ...+.+.|. .+..++++.|+++|++|+++++....|++
T Consensus 133 ~~YiiaQllGA~lga~~~~~l~~~~~~~~~--~~~-~~~~~t~p~------~s~~~af~~E~i~TfvLv~~il~~~~~~~ 203 (296)
T PLN00184 133 PAYVISQVIGSTLAAATLRLLFGLDHDVCS--GKH-DVFIGSSPV------GSDLQAFVMEFIVTFYLMFIISGVATDNR 203 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhccc--ccc-ceeeccCcC------CcHHHHHHHHHHHHHHHHHHHHheeccCc
Confidence 999999999999999999998875432211 110 011223332 47899999999999999999887655544
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHHHHHHHh
Q 036381 148 QAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLI 227 (235)
Q Consensus 148 ~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l 227 (235)
... ...|+.+|+++...++.. + ++||++|||||||||+++.+ .|+++||||+||++|+++++++|+++
T Consensus 204 ~~~----~~~~l~IG~~v~~~~~~~----g--~~TG~smNPAR~~GPal~~~--~~~~~WVy~vgPilGa~laal~y~~l 271 (296)
T PLN00184 204 AIG----ELAGLAIGSTVLLNVLIA----A--PVSSASMNPGRSLGPAMVYG--CYKGIWIYIVAPTLGAIAGAWVYNTV 271 (296)
T ss_pred CCC----cchHHHHHHHHHHHHHHh----c--ccCccccCchhhHHHHHHhh--cccccchHHhHHHHHHHHHHHHHHHH
Confidence 221 133666777666655543 2 88999999999999999977 78999999999999999999999988
Q ss_pred cCCC
Q 036381 228 PSQH 231 (235)
Q Consensus 228 ~~~~ 231 (235)
..++
T Consensus 272 ~~~~ 275 (296)
T PLN00184 272 RYTD 275 (296)
T ss_pred hcCC
Confidence 7543
No 5
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=2.2e-44 Score=311.54 Aligned_cols=216 Identities=23% Similarity=0.307 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhcccC----Cch---------hhHhHHHhhcCccccccchHHHHHHHHhccCCccch
Q 036381 1 VWRASLTEVLGTALLVFALDTIVISSIQ----TDT---------IIAILLLATFPISGGHINPLVTFSAALIGHMTVTRA 67 (235)
Q Consensus 1 ~~r~~~~Ef~gT~~lv~~~~~~~~~~~~----~~~---------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~ 67 (235)
++|++++||+||++|+|.++++..+... .+. ++++.+++++++||+|+|||||+++++.|+++|.+.
T Consensus 49 ~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~~~ 128 (294)
T PTZ00016 49 NVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWKKL 128 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHHHH
Confidence 3689999999999999988776543211 111 566778999999999999999999999999999999
Q ss_pred hhheeccchhHHHhhhhhhhhcccchhhhhcC-------CCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHH
Q 036381 68 AIYILAQCVGGVFGALAPKAVVSTKIEHAFSL-------GGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASM 140 (235)
Q Consensus 68 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~ 140 (235)
+.|+++|++||++|++++|.++++.+.+.+.. .....+.+++.|+ .+..++++.|+++|++|+++++
T Consensus 129 ~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p~------~s~~~a~~~E~i~T~iLv~~il 202 (294)
T PTZ00016 129 PGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYPR------EGNFYAIFSELILTAILLLVIL 202 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCCC------ccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998755433110 0112234455553 6789999999999999999988
Q ss_pred HHhhcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhh----CCCCCC----ceeeeehh
Q 036381 141 WMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVR----GGHLWD----RHWVFWAG 212 (235)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~----g~~~~~----~~wvy~v~ 212 (235)
.. .|++++...+ ..|+.+|+.+....+.. + ++||++||||||||||++. |+..|+ |+||||+|
T Consensus 203 a~-~d~~~~~~~~--~~pl~IGl~v~~i~~~~----g--~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vg 273 (294)
T PTZ00016 203 AI-TDPNNCPAFN--YLPVAVGLLVFVIGISF----G--GNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVA 273 (294)
T ss_pred Hh-ccCccCCCcC--cccHHHHHHHHHHHHhc----c--CCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehH
Confidence 65 5555432211 24666666665444332 2 7899999999999999997 433454 68999999
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 036381 213 PATACVAFALYIKLIPSQH 231 (235)
Q Consensus 213 p~~Ga~~a~~~~~~l~~~~ 231 (235)
|++|+++++++||++.++.
T Consensus 274 P~vGa~~aally~~ll~~~ 292 (294)
T PTZ00016 274 PFVGAVLGMFLYDKFIPPL 292 (294)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999999999887654
No 6
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=304.80 Aligned_cols=220 Identities=21% Similarity=0.311 Sum_probs=176.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhcc----cCCch----------hhHhHHHhhcCccccccchHHHHHHHHhccCCccc
Q 036381 1 VWRASLTEVLGTALLVFALDTIVISS----IQTDT----------IIAILLLATFPISGGHINPLVTFSAALIGHMTVTR 66 (235)
Q Consensus 1 ~~r~~~~Ef~gT~~lv~~~~~~~~~~----~~~~~----------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~ 66 (235)
+.|++++||+||++|++++++++... ...+. ++++.+++.+++||||+|||||+++++.||++|+|
T Consensus 31 l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~k 110 (316)
T KOG0224|consen 31 LLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRLPWKK 110 (316)
T ss_pred HHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCCChhh
Confidence 47999999999999999987765321 11111 78999999999999999999999999999999999
Q ss_pred hhhheeccchhHHHhhhhhhhhcccchhhhhcC------CCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHH
Q 036381 67 AAIYILAQCVGGVFGALAPKAVVSTKIEHAFSL------GGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASM 140 (235)
Q Consensus 67 ~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~ 140 (235)
+++|+++|++||++|++.+|.+|.+.+.+.+.. ...|.+.|+|.|.+ +++.+++|+.|+++|.+|+..++
T Consensus 111 ~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p----~ls~~n~F~DqfigTa~L~~~l~ 186 (316)
T KOG0224|consen 111 FPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAP----HLSLWNGFFDQFIGTAMLVLCLF 186 (316)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCch----HhhhhHHHHHHHHHHHHHHhhee
Confidence 999999999999999999999999988766431 13567889999987 69999999999999999998765
Q ss_pred HHhhcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhh-----CCCCC----Cceeeeeh
Q 036381 141 WMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVR-----GGHLW----DRHWVFWA 211 (235)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~-----g~~~~----~~~wvy~v 211 (235)
...|+|+. ......|+.+|+.+.+ ++.+.+ ..+|-.+|||||||||+++ |.+.+ ++.|++|+
T Consensus 187 -aI~D~rN~--~p~g~~p~~iG~lv~~---Ig~s~G---~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPiv 257 (316)
T KOG0224|consen 187 -AITDKRNP--IPTGLHPLVIGILVVA---IGMSLG---YNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIV 257 (316)
T ss_pred -EEecCCCC--CCcchhHHHHHHHHHH---HHHHhh---cccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeeh
Confidence 56788773 3334557666655543 233333 5677789999999999995 32211 46789999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCC
Q 036381 212 GPATACVAFALYIKLIPSQHLH 233 (235)
Q Consensus 212 ~p~~Ga~~a~~~~~~l~~~~~~ 233 (235)
+|++|+++++++|++....|..
T Consensus 258 gPl~Gai~G~~iY~~~Ig~h~~ 279 (316)
T KOG0224|consen 258 GPLIGAILGGWIYDFFIGFHIP 279 (316)
T ss_pred hhhhhhhhhhhhheeeeeccCC
Confidence 9999999999999988765543
No 7
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=3.9e-44 Score=308.74 Aligned_cols=202 Identities=30% Similarity=0.430 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhcccCCc---h----------hhHhHHHhhcCccccccchHHHHHHHHhccCCccch
Q 036381 1 VWRASLTEVLGTALLVFALDTIVISSIQTD---T----------IIAILLLATFPISGGHINPLVTFSAALIGHMTVTRA 67 (235)
Q Consensus 1 ~~r~~~~Ef~gT~~lv~~~~~~~~~~~~~~---~----------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~ 67 (235)
++|++++||+||++|+|++++....+...+ . ++++.+++++++||+|+|||||+++++.|+++|.+.
T Consensus 70 ~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~~~~ 149 (298)
T PLN00026 70 LTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWKHV 149 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcHHHH
Confidence 479999999999999998876433221111 0 677888999999999999999999999999999999
Q ss_pred hhheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHhhcch
Q 036381 68 AIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDER 147 (235)
Q Consensus 68 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~~~~~ 147 (235)
+.|+++|++|+++|+.+++.++++... ++. +.| +++..++++.|+++|++|+++++....|++
T Consensus 150 ~~YiiaQilGAi~aa~~~~~~~~~~~~-----~g~------t~p------~~s~~~a~~~Efi~TfiLv~vi~~v~~~~~ 212 (298)
T PLN00026 150 PAYIAAQVSASICASFALKGVFHPFMS-----GGV------TVP------SVSTGQAFALEFIITFNLLFVVTAVATDTR 212 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc-----Cce------eee------cccHHHHHHHHHHHHHHHHHhheeeecCCC
Confidence 999999999999999999998875321 121 123 357899999999999999999886545544
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHHHHHHHh
Q 036381 148 QAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLI 227 (235)
Q Consensus 148 ~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l 227 (235)
+... ..++.+|+++.+.++.. + ++||++|||||||||+++.+ +|+++|+||++|++|+++++++|+.+
T Consensus 213 ~~~~----~~~l~iGl~V~~~~l~~----g--~~TGa~mNPARtlgPal~~~--~~~~~wVy~vaPilGAilga~ly~~~ 280 (298)
T PLN00026 213 AVGE----LAGIAVGATVMLNILVA----G--PSTGGSMNPVRTLGPAVAAG--NYRAIWIYLVAPTLGALAGAGTYTAV 280 (298)
T ss_pred CcCC----ccchHHHHHHHHHHHHh----c--ccCccccChHHHHHHHHhcC--CchheeHHHHHHHHHHHHHHHHHHHH
Confidence 3211 23456666665555443 3 78999999999999999965 79999999999999999999999988
Q ss_pred cCCC
Q 036381 228 PSQH 231 (235)
Q Consensus 228 ~~~~ 231 (235)
..++
T Consensus 281 ~~~~ 284 (298)
T PLN00026 281 KLRE 284 (298)
T ss_pred hCcc
Confidence 5444
No 8
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=5.5e-44 Score=300.17 Aligned_cols=202 Identities=36% Similarity=0.608 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhh---cccCC-------ch---------hhHhHHHhhcCccccccchHHHHHHHHhcc
Q 036381 1 VWRASLTEVLGTALLVFALDTIVI---SSIQT-------DT---------IIAILLLATFPISGGHINPLVTFSAALIGH 61 (235)
Q Consensus 1 ~~r~~~~Ef~gT~~lv~~~~~~~~---~~~~~-------~~---------~~~~~i~~~~~iSGah~NPavTla~~~~g~ 61 (235)
+||++++||+||++++|.+++... ....+ +. .+.+.+++++++||+|+||+||++.++.|+
T Consensus 7 ~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~g~ 86 (227)
T PF00230_consen 7 LWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALTGR 86 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeeeee
Confidence 489999999999999998766432 11111 11 567788999999999999999999999999
Q ss_pred CCccchhhheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHH
Q 036381 62 MTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMW 141 (235)
Q Consensus 62 ~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~ 141 (235)
+++++.+.|+++|++|+++|+.+.+.++++..... .. . ++.|+. +.+..++++.|+++|++|+++++.
T Consensus 87 ~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~-~~-~------~~~~~~----~~s~~~~~~~E~~~t~il~~~i~~ 154 (227)
T PF00230_consen 87 ISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAA-GI-F------ATTPPP----GISLGQAFFSEFIGTFILVLVILA 154 (227)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCT-TT-T------SCGSTT----TSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccceeeEEeeccccccccccchhhcccCccccc-cc-c------cccccc----cchhhhhhhhhhhhhhHHHhhhhh
Confidence 99999999999999999999999999998752111 11 1 113333 578999999999999999999887
Q ss_pred HhhcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHH
Q 036381 142 MAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFA 221 (235)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~ 221 (235)
...|+++.+ .++ ..|+.+|+.++...+... +.||++|||||||||+++.+ .|+++|+||++|++|+++++
T Consensus 155 ~~~~~~~~~-~~~-~~p~~ig~~v~~~~~~~~------~~tG~~~NPAr~~g~~l~~~--~~~~~wvy~~~P~~Ga~~a~ 224 (227)
T PF00230_consen 155 VADDKRKFP-LGP-LAPLAIGLTVGALVLAGG------PYTGASLNPARALGPALFSG--IWDYFWVYWVGPFIGAILAA 224 (227)
T ss_dssp HTSTTSSST-SSG-GHHHHHHHHHHHHHHHHH------HHHST-SSHHHHHHHHHHHT--HHTTTTHHHHHHHHHHHHHH
T ss_pred hcccccccc-ccc-ccceeEEEEEeecccccc------cccccccCchhhcCceeecc--cCCeEEEEEehHHHHHHHHH
Confidence 655554333 222 457888888877766654 66789999999999999987 59999999999999999999
Q ss_pred HHH
Q 036381 222 LYI 224 (235)
Q Consensus 222 ~~~ 224 (235)
++|
T Consensus 225 ~~Y 227 (227)
T PF00230_consen 225 LLY 227 (227)
T ss_dssp HHH
T ss_pred hhC
Confidence 987
No 9
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=4e-43 Score=301.33 Aligned_cols=201 Identities=29% Similarity=0.459 Sum_probs=159.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhcccC--C--ch---------hhHhHHHhhcCccccccchHHHHHHHHhccCCccch
Q 036381 1 VWRASLTEVLGTALLVFALDTIVISSIQ--T--DT---------IIAILLLATFPISGGHINPLVTFSAALIGHMTVTRA 67 (235)
Q Consensus 1 ~~r~~~~Ef~gT~~lv~~~~~~~~~~~~--~--~~---------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~ 67 (235)
++|++++||+||++|+|.+++....... . +. .+++++++++++||+|+|||||+++++.|+++|.+.
T Consensus 41 ~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~~~~ 120 (283)
T PLN00182 41 LTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWYQV 120 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCHHHH
Confidence 3799999999999999988876543211 1 11 577788999999999999999999999999999999
Q ss_pred hhheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHhhcch
Q 036381 68 AIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDER 147 (235)
Q Consensus 68 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~~~~~ 147 (235)
+.|+++|++|+++|+++++.+++.... ..+.+.|+ .+..++++.|+++|++|+++++....|++
T Consensus 121 ~~Yi~aQ~lGa~~ga~~~~~~~~~~~~----------~~~~~~p~------~s~~~a~~~E~l~TfiLv~~i~~~~~~~~ 184 (283)
T PLN00182 121 PLYIGAQLTGSLLASLTLRLMFNVTPE----------AFFGTTPT------DSSGQALVAEIIISFLLMFVISGVATDSR 184 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc----------ceeeCCCC------cchHHHHHHHHHHHHHHHHHHHhheeccc
Confidence 999999999999999999988853211 11233443 46789999999999999998886655543
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHHHHHHHh
Q 036381 148 QAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLI 227 (235)
Q Consensus 148 ~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l 227 (235)
... ...++.+|+.+...++. .+ ++||+++||||+|||+++.+ .|+++|+||++|++|+++++++|+++
T Consensus 185 ~~~----~~~~l~iGl~V~~~~~~----~g--~~SGa~lNPARt~gpal~~~--~~~~~wvY~vap~lGA~lgally~~l 252 (283)
T PLN00182 185 AVG----ELAGIAVGMTIILNVFV----AG--PISGASMNPARSLGPAIVMG--RYKGIWVYIVGPFVGIIAGGFVYNLI 252 (283)
T ss_pred cCC----cchhHHHHHHHHHHHHH----cc--ccCccccChHHHHHHHHHhc--cccceeHHHHHHHHHHHHHHHHHHHH
Confidence 211 12355555555544443 33 88999999999999999866 79999999999999999999999988
Q ss_pred cC
Q 036381 228 PS 229 (235)
Q Consensus 228 ~~ 229 (235)
..
T Consensus 253 ~~ 254 (283)
T PLN00182 253 RF 254 (283)
T ss_pred hc
Confidence 63
No 10
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=8.1e-43 Score=295.64 Aligned_cols=204 Identities=26% Similarity=0.434 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc--c---c----CCch---------hhHhHHHhhcCccccccchHHHHHHHHhccCC
Q 036381 2 WRASLTEVLGTALLVFALDTIVIS--S---I----QTDT---------IIAILLLATFPISGGHINPLVTFSAALIGHMT 63 (235)
Q Consensus 2 ~r~~~~Ef~gT~~lv~~~~~~~~~--~---~----~~~~---------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~ 63 (235)
+|++++|++||++|+|.+++.... . . ..+. .+++.+++++++||+|+|||+|++.++.|+++
T Consensus 18 ~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~g~~~ 97 (250)
T PLN00166 18 LKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNIT 97 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCC
Confidence 688999999999999988776432 1 0 0111 66778899999999999999999999999999
Q ss_pred ccchhhheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHh
Q 036381 64 VTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMA 143 (235)
Q Consensus 64 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~ 143 (235)
|.+.++|+++|++|+++|+.+.+.+++++.... . ... .+.+..++++.|+++|++|+++++...
T Consensus 98 ~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~~~-----~-------~~~----~~~~~~~~~~~E~v~Tf~Lv~~i~~~~ 161 (250)
T PLN00166 98 IITGFFYWIAQCLGSIVACLLLVFVTNGESVPT-----H-------GVA----AGLGAIEGVVMEIVVTFALVYTVYATA 161 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc-----c-------ccC----CCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988875421110 0 111 146789999999999999999988766
Q ss_pred hcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHHHH
Q 036381 144 FDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALY 223 (235)
Q Consensus 144 ~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~~~ 223 (235)
.|+++... ....|+.+|+.+....+.. + ++||++|||||||||+++++ +|+++|+||++|++|+++++++
T Consensus 162 ~~~~~~~~--~~~~p~~iGl~v~~~~~~~----~--~~tG~~~NPAR~~gPal~~~--~~~~~wvywvgPi~Ga~~aa~~ 231 (250)
T PLN00166 162 ADPKKGSL--GTIAPIAIGFIVGANILAA----G--PFSGGSMNPARSFGPAVVSG--DFSQIWIYWVGPLVGGALAGLI 231 (250)
T ss_pred cccccccc--ccchhHHHHHHHHHHHHcc----c--CCCCCccCchHhhHHHHhcC--CCcccchhhHHHHHHHHHHHHH
Confidence 65543221 1234677777666555443 2 89999999999999999977 6999999999999999999999
Q ss_pred HHHhcCCC
Q 036381 224 IKLIPSQH 231 (235)
Q Consensus 224 ~~~l~~~~ 231 (235)
||.+..+.
T Consensus 232 y~~l~~~~ 239 (250)
T PLN00166 232 YGDVFIGS 239 (250)
T ss_pred HHHHhccc
Confidence 98775433
No 11
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=2.8e-42 Score=293.15 Aligned_cols=202 Identities=29% Similarity=0.473 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc-----cc----CCc---h------hhHhHHHhhcCccccccchHHHHHHHHhccCC
Q 036381 2 WRASLTEVLGTALLVFALDTIVIS-----SI----QTD---T------IIAILLLATFPISGGHINPLVTFSAALIGHMT 63 (235)
Q Consensus 2 ~r~~~~Ef~gT~~lv~~~~~~~~~-----~~----~~~---~------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~ 63 (235)
+|++++||+||++|+|.+++.... .. ..+ . .+++.+++++++||+|+|||+|++.++.|+++
T Consensus 20 ~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g~~~ 99 (252)
T PLN00027 20 LKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGNIT 99 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhCCCC
Confidence 688999999999999988765321 11 111 0 56778899999999999999999999999999
Q ss_pred ccchhhheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHh
Q 036381 64 VTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMA 143 (235)
Q Consensus 64 ~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~ 143 (235)
+.+.+.|+++|++||++|+.+.+.+.++... +.+.+.| +++..++++.|+++|++|+++++...
T Consensus 100 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~----------~~~~~~~------~~~~~~~~~~E~i~Tf~Lv~~i~~~~ 163 (252)
T PLN00027 100 LLRGILYWIAQLLGSVVACLLLKFSTGGLET----------SAFSLSS------GVGVWNAFVFEIVMTFGLVYTVYATA 163 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----------ccccCCC------CccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988877653211 1122233 46889999999999999999988766
Q ss_pred hcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHHHH
Q 036381 144 FDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALY 223 (235)
Q Consensus 144 ~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~~~ 223 (235)
.|+++... ....|+.+|+.+....+.. + ++||++|||||||||+++.+ .|+++|+||+||++|+++++++
T Consensus 164 ~~~~~~~~--~~~~p~~iGl~v~~~~~~~----g--~~TG~~~NPAR~~gPal~~~--~~~~~wvy~vgP~~Ga~laa~~ 233 (252)
T PLN00027 164 VDPKKGDL--GIIAPIAIGFIVGANILAG----G--AFDGASMNPAVSFGPAVVSW--TWTNHWVYWAGPLIGGGIAGLV 233 (252)
T ss_pred cccccCCc--cchHHHHHHHHHHHHHHhc----c--cccccccCcchhHHHHHHhh--cchhhhHHHHHHHHHHHHHHHH
Confidence 66554221 1244667777666555443 2 88999999999999999976 7999999999999999999999
Q ss_pred HHHhcC
Q 036381 224 IKLIPS 229 (235)
Q Consensus 224 ~~~l~~ 229 (235)
||++..
T Consensus 234 y~~l~~ 239 (252)
T PLN00027 234 YELIFI 239 (252)
T ss_pred HHHHhc
Confidence 999864
No 12
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=3e-41 Score=286.78 Aligned_cols=203 Identities=25% Similarity=0.332 Sum_probs=159.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhccc----CC---c--h---------hhHhHHHhhcCccccccchHHHHHHHHhccC
Q 036381 1 VWRASLTEVLGTALLVFALDTIVISSI----QT---D--T---------IIAILLLATFPISGGHINPLVTFSAALIGHM 62 (235)
Q Consensus 1 ~~r~~~~Ef~gT~~lv~~~~~~~~~~~----~~---~--~---------~~~~~i~~~~~iSGah~NPavTla~~~~g~~ 62 (235)
++|++++||+||++|+|.+++...... +. . . .+++.+++++++||+|+|||||++.++.|++
T Consensus 21 ~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~g~~ 100 (256)
T PLN00167 21 ALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVGGHI 100 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHhCCC
Confidence 378999999999999998877654221 00 1 1 6788899999999999999999999999999
Q ss_pred CccchhhheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHH
Q 036381 63 TVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWM 142 (235)
Q Consensus 63 ~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~ 142 (235)
+|++.+.|+++|++|+++|+.+.+.++++..... . ... .+.+..++++.|+++|++|+++++..
T Consensus 101 ~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~-----~-------~~~----~~~s~~~~~~~E~i~T~~L~~~i~~~ 164 (256)
T PLN00167 101 SVPTAMFYWISQMLASVMACLFLKVTTVGQHVPT-----Y-------KIA----EEMTGFGASVLEGVLTFGLVYTVYAA 164 (256)
T ss_pred cHhhhhHHHHHHHHHHHHHHHHHHHhhccccccc-----c-------ccC----cccchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988765421110 0 011 13567889999999999999988854
Q ss_pred hhcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHHH
Q 036381 143 AFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFAL 222 (235)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~~ 222 (235)
.|+++.... ...|+.+|+.+....+.. + ++||++|||||||||+++.+ .|+++|+||+||++|++++++
T Consensus 165 -~~~~~~~~~--~~~pl~iGl~v~~~~~~~----g--~~TG~a~NPAR~~gPal~~~--~~~~~wvywvgP~~Ga~l~a~ 233 (256)
T PLN00167 165 -GDPRRGLLG--AIGPLAIGLVAGANVLAA----G--PFSGGSMNPACAFGSAVVAG--SFKNQAVYWVGPLLGGAVAGL 233 (256)
T ss_pred -ccccccCCC--CcchHHHHHHHHHHHHhc----c--CCCCcccCcccchHHHHhcc--CccCcEEEeHHHHHHHHHHHH
Confidence 454432211 134666777666554443 2 88999999999999999976 689999999999999999999
Q ss_pred HHHHhcCC
Q 036381 223 YIKLIPSQ 230 (235)
Q Consensus 223 ~~~~l~~~ 230 (235)
+|+++..+
T Consensus 234 ~y~~l~~~ 241 (256)
T PLN00167 234 LYDNVVFP 241 (256)
T ss_pred HHHHHhCC
Confidence 99877643
No 13
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=2e-41 Score=284.77 Aligned_cols=213 Identities=29% Similarity=0.450 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCC----ch----------hhHhHHHhhcCccccccchHHHHHHHHhccCCccchh
Q 036381 3 RASLTEVLGTALLVFALDTIVISSIQT----DT----------IIAILLLATFPISGGHINPLVTFSAALIGHMTVTRAA 68 (235)
Q Consensus 3 r~~~~Ef~gT~~lv~~~~~~~~~~~~~----~~----------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~ 68 (235)
|++++||+||+++++.+++...+...+ .. .+.+.+++++++||+|+|||+|+++++.|+++|.+.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~ 80 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVI 80 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHH
Confidence 789999999999999888765442211 11 5677789999999999999999999999999999999
Q ss_pred hheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHhhcchh
Q 036381 69 IYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQ 148 (235)
Q Consensus 69 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~~~~~~ 148 (235)
.|+++|++|+++|+.+.+.+++++..+.++......+.+++.|.. +.+..++++.|+++|++|++.++....++++
T Consensus 81 ~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~ 156 (228)
T cd00333 81 PYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSP----GVSNGNAFFVEFIGTFILVLVVFATTDDPNG 156 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCC----CccHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 999999999999999999999887665432211111234445554 5789999999999999999998876543322
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCC-CCCCceeeeehhHHHHHHHHHHHHHHh
Q 036381 149 AKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGG-HLWDRHWVFWAGPATACVAFALYIKLI 227 (235)
Q Consensus 149 ~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~-~~~~~~wvy~v~p~~Ga~~a~~~~~~l 227 (235)
.. .....++.+|+.+...++.. + ++||+++|||||++|+++.+. ..|+++|+||++|++|+++++++||++
T Consensus 157 ~~--~~~~~~~~iGl~v~~~~~~~----g--~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 157 PP--PGGLAPLAIGLLVAAIGLAG----G--PITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred CC--CCCcHHHHHHHHHHHHHHHh----h--cccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 11 11233566666666555543 2 789999999999999999653 159999999999999999999999864
No 14
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=5.3e-41 Score=287.23 Aligned_cols=203 Identities=27% Similarity=0.505 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccC--C--ch---------hhHhHHHhhcCccccccchHHHHHHHHhccCCccchh
Q 036381 2 WRASLTEVLGTALLVFALDTIVISSIQ--T--DT---------IIAILLLATFPISGGHINPLVTFSAALIGHMTVTRAA 68 (235)
Q Consensus 2 ~r~~~~Ef~gT~~lv~~~~~~~~~~~~--~--~~---------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~ 68 (235)
||++++||++|++++|++++....... . +. .+.+.+++++++||+|+|||+|+++++.|+++|.+.+
T Consensus 45 ~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~i~~~~~~ 124 (274)
T PLN00183 45 ARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPWSKVP 124 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhcCCCHHHHH
Confidence 789999999999999988776543221 1 11 5677889999999999999999999999999999999
Q ss_pred hheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHhhcchh
Q 036381 69 IYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQ 148 (235)
Q Consensus 69 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~~~~~~ 148 (235)
.|+++|++|+++|+.+.+.+++.... .+.+.|. .+..++++.|+++|++|++.++....++++
T Consensus 125 ~Yi~aQ~lGa~~ga~l~~~~~~~~~~-----------~~~~~p~------~~~~~~~~~E~v~T~iLv~~i~~~~~~~~~ 187 (274)
T PLN00183 125 LYITAQTVGSVLATYVGVSVYGVKAD-----------LMTTKPA------QGCSSAFWVEFIATFIVMFLAASLTSQPQS 187 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcc-----------cccCCCc------ccHHHHHHHHHHHHHHHHHhhheeeccccC
Confidence 99999999999999998888865311 1122343 356899999999999999988765444322
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHHHHHHHhc
Q 036381 149 AKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYIKLIP 228 (235)
Q Consensus 149 ~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~ 228 (235)
... ..++.+|+.+...++.. + ++||++|||||+|+|+++.+ .|+++|+||++|++|+++++++||++.
T Consensus 188 ~~~----~~~l~iGl~v~~~v~~~----g--~~TG~~~NPArtlgpai~~~--~~~~~wvy~vapilGailaa~l~~~l~ 255 (274)
T PLN00183 188 LGH----LSGFVIGIAIGLAVLIT----G--PVSGGSMNPARSLGPAIVSW--DFKDIWIYITAPTIGAVAGALMFHLLR 255 (274)
T ss_pred CCC----ceehHHHHHHHHHHHhc----c--CCCCCEeCHHHHHHHHHhCC--ChhheehHHHHHHHHHHHHHHHHHHHh
Confidence 211 23566666666655443 2 88999999999999999864 799999999999999999999999998
Q ss_pred CCCCC
Q 036381 229 SQHLH 233 (235)
Q Consensus 229 ~~~~~ 233 (235)
.++..
T Consensus 256 ~~~~~ 260 (274)
T PLN00183 256 LRTQP 260 (274)
T ss_pred ccCCC
Confidence 76543
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=1.6e-38 Score=265.14 Aligned_cols=198 Identities=29% Similarity=0.471 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHhhhhhcc-------cCC--ch---------hhHhHHHhhcCccccccchHHHHHHHHhccCCccchh
Q 036381 7 TEVLGTALLVFALDTIVISS-------IQT--DT---------IIAILLLATFPISGGHINPLVTFSAALIGHMTVTRAA 68 (235)
Q Consensus 7 ~Ef~gT~~lv~~~~~~~~~~-------~~~--~~---------~~~~~i~~~~~iSGah~NPavTla~~~~g~~~~~~~~ 68 (235)
+||+||++|+|.+++..... ... +. .+.+.+++++++||+|+|||+|++.++.|+++|.+.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 59999999999887665431 111 11 5667788999999999999999999999999999999
Q ss_pred hheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHHHHHHHHHHHHhhcchh
Q 036381 69 IYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCSFVFLFASMWMAFDERQ 148 (235)
Q Consensus 69 ~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T~ilv~~~~~~~~~~~~ 148 (235)
.|+++|++|+++|+.+.+.++++....... . ...++. +.+..++++.|+++|++|+++++... ++++
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~--~------~~~~~~----~~~~~~~~~~E~i~T~~lv~~~~~~~-~~~~ 147 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLFPGNLA--V------NGSGAA----GVSSGQAFFVEFIGTAILVLVIFATT-DPRN 147 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCcc--c------cCCCCC----cccHHHHHHHHHHHHHHHHHHHheee-cCCC
Confidence 999999999999999999988875422111 0 011211 46889999999999999999888654 3332
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHHHHHHHHHH
Q 036381 149 AKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATACVAFALYI 224 (235)
Q Consensus 149 ~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~Ga~~a~~~~ 224 (235)
... .....++.+|+.+...++. .+ ++||+++||||||+|+++++..+|+++|+||++|++|+++++.+|
T Consensus 148 ~~~-~~~~~~~~iG~~v~~~~~~----~g--~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 148 RVP-RGGFAPLAIGLLVFLIHLS----MG--PYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred CCC-CCccHHHHHHHHHHHHHHh----CC--CCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHhC
Confidence 211 1113455566555554443 33 889999999999999999765689999999999999999998865
No 16
>PLN00026 aquaporin NIP; Provisional
Probab=99.68 E-value=1.2e-16 Score=138.26 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=79.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHh
Q 036381 118 GLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFV 197 (235)
Q Consensus 118 ~~~~~~~~~~E~i~T~ilv~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~ 197 (235)
+.+..+.++.|+++|++|+++++.....+++...... .+.+++.+|+.+.+.....+ ++||+|+||||++++++.
T Consensus 67 ~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~---~~~ial~~GlaV~~~i~~~g--~ISGaHlNPAVTla~al~ 141 (298)
T PLN00026 67 DVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAET---LIGNAACAGLAVMIVILSTG--HISGAHLNPSLTIAFAAL 141 (298)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccc---hHHHHHHHHHHHHHHHHHhh--ccCccccCHHHHHHHHHh
Confidence 5678899999999999999998865443222111111 12233444444444444334 899999999999999997
Q ss_pred hCCCCCCceeeeehhHHHHHHHHHHHHHHhcCCC
Q 036381 198 RGGHLWDRHWVFWAGPATACVAFALYIKLIPSQH 231 (235)
Q Consensus 198 ~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~~~ 231 (235)
++..|.+.|+||++|++|+++|+++++.++++.
T Consensus 142 -g~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~ 174 (298)
T PLN00026 142 -RHFPWKHVPAYIAAQVSASICASFALKGVFHPF 174 (298)
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 567899999999999999999999999887653
No 17
>PLN00184 aquaporin NIP1; Provisional
Probab=99.64 E-value=3.3e-16 Score=135.71 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=78.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHh
Q 036381 118 GLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFV 197 (235)
Q Consensus 118 ~~~~~~~~~~E~i~T~ilv~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~ 197 (235)
+.+..+.++.|+++|++|++++++....+..... +.. .+.+++.+|+.+.+.....+ ++||+|+||||++++++.
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~-~~~--~~~iai~~Gl~v~~~i~~~g--~iSGaH~NPAVTla~al~ 124 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDN-VVT--LPGIAIVWGLTIMVLIYSLG--HISGAHINPAVTIAFASC 124 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-ccc--cHHHHHHHHHHHHHHHHHhc--CCCccccCHHHHHHHHHh
Confidence 4567899999999999999999876543221111 111 12233344444444444444 899999999999999996
Q ss_pred hCCCCCCceeeeehhHHHHHHHHHHHHHHhcCC
Q 036381 198 RGGHLWDRHWVFWAGPATACVAFALYIKLIPSQ 230 (235)
Q Consensus 198 ~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~~ 230 (235)
|+.+|.+.|+||++|++|+++|+++++.+++.
T Consensus 125 -g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~ 156 (296)
T PLN00184 125 -GRFPLKQVPAYVISQVIGSTLAAATLRLLFGL 156 (296)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66789999999999999999999888887753
No 18
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.60 E-value=2.6e-15 Score=128.92 Aligned_cols=107 Identities=14% Similarity=0.179 Sum_probs=79.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHh
Q 036381 118 GLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFV 197 (235)
Q Consensus 118 ~~~~~~~~~~E~i~T~ilv~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~ 197 (235)
+.+.+++++.|+++|+++++++++...+++..+. +.. .+.+++.+|+.+.+.....+ ++||+++||||++++++.
T Consensus 41 ~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~-~~~--~~~~al~~Gl~V~~~i~~~g--~vSGah~NPAvTla~~l~ 115 (274)
T PLN00183 41 DLNPARMVLAEMVGTFILMFCVCGIIASTQLSGG-EVG--LLEYAATAGLTVVVVVFSIG--SISGAHVNPSVTIAFATF 115 (274)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-ccc--hHHHHHHHHHHHHHHHHHhh--ccCccccCHHHHHHHHHh
Confidence 5778899999999999999998876654332111 111 11233344444444444444 889999999999999997
Q ss_pred hCCCCCCceeeeehhHHHHHHHHHHHHHHhcCC
Q 036381 198 RGGHLWDRHWVFWAGPATACVAFALYIKLIPSQ 230 (235)
Q Consensus 198 ~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~~ 230 (235)
++..|.+.|+||++|++|+++++.+++.++..
T Consensus 116 -g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~ 147 (274)
T PLN00183 116 -GHFPWSKVPLYITAQTVGSVLATYVGVSVYGV 147 (274)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65689999999999999999999998887653
No 19
>PLN00166 aquaporin TIP2; Provisional
Probab=99.59 E-value=2.2e-15 Score=128.08 Aligned_cols=108 Identities=20% Similarity=0.322 Sum_probs=79.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhcc--hhhh-hhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhH
Q 036381 119 LDTGVALWLEIFCSFVFLFASMWMAFDE--RQAK-ALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPA 195 (235)
Q Consensus 119 ~~~~~~~~~E~i~T~ilv~~~~~~~~~~--~~~~-~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a 195 (235)
.+..++++.|+++|++|++++++...+. +.++ ..+.. ..+.+++.+|+.+++.....+ ++||+|+||||++++.
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~-~~~~ial~~Gl~v~~~i~~~g--~iSGah~NPAvt~~~~ 91 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPA-GLVAVAVAHAFALFVGVSIAA--NISGGHLNPAVTLGLA 91 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCC-ccHHHHHHHHHHHHHHHHHHh--cccccccCHHHHHHHH
Confidence 5678999999999999999998875441 1111 00000 122344445555555544444 8999999999999999
Q ss_pred HhhCCCCCCceeeeehhHHHHHHHHHHHHHHhcCC
Q 036381 196 FVRGGHLWDRHWVFWAGPATACVAFALYIKLIPSQ 230 (235)
Q Consensus 196 ~~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~~ 230 (235)
+. |+..|.+.|+||++|++|+++++.+++.+.++
T Consensus 92 l~-g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 92 IG-GNITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred Hh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 96 66678999999999999999999999887654
No 20
>PLN00167 aquaporin TIP5; Provisional
Probab=99.58 E-value=6.2e-15 Score=125.66 Aligned_cols=109 Identities=21% Similarity=0.309 Sum_probs=80.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhcchh--hhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHH
Q 036381 119 LDTGVALWLEIFCSFVFLFASMWMAFDERQ--AKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAF 196 (235)
Q Consensus 119 ~~~~~~~~~E~i~T~ilv~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~ 196 (235)
.+.++.++.|+++|++|++.+++...+++. .+........+.+++.+|+.+.+.....+ ++||+|+||||++++.+
T Consensus 19 ~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g--~iSGah~NPAvtl~~~~ 96 (256)
T PLN00167 19 RNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAA--NISGGHVNPAVTFGMAV 96 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhh--cccccccCHHHHHHHHH
Confidence 457789999999999999998887654321 11100001123444555555555554444 89999999999999999
Q ss_pred hhCCCCCCceeeeehhHHHHHHHHHHHHHHhcCC
Q 036381 197 VRGGHLWDRHWVFWAGPATACVAFALYIKLIPSQ 230 (235)
Q Consensus 197 ~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~~ 230 (235)
. ++..|.+.|+||++|++|+++++.+++.++++
T Consensus 97 ~-g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 97 G-GHISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred h-CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6 66789999999999999999999888887655
No 21
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.54 E-value=1.4e-14 Score=124.95 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=76.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhcchhh-hhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHh
Q 036381 119 LDTGVALWLEIFCSFVFLFASMWMAFDERQA-KALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFV 197 (235)
Q Consensus 119 ~~~~~~~~~E~i~T~ilv~~~~~~~~~~~~~-~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~ 197 (235)
.+..+.++.|+++|++|++.+++...+.+.. ...+ .+.+.+.+|+.+.+.....+ ++||+|+|||+++++++.
T Consensus 39 ~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~----~~~iala~Gl~v~~~i~~~g--~iSGah~NPAVTla~~~~ 112 (283)
T PLN00182 39 VCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTIT----FPGICVTWGLIVMVMIYSTG--HISGAHFNPAVTVTFAIF 112 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcc----hHHHHHHHHHHHHHHHHHhc--CCCccccCHHHHHHHHHH
Confidence 4567899999999999999988765543221 1111 12233344444444444444 889999999999999997
Q ss_pred hCCCCCCceeeeehhHHHHHHHHHHHHHHhcC
Q 036381 198 RGGHLWDRHWVFWAGPATACVAFALYIKLIPS 229 (235)
Q Consensus 198 ~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~ 229 (235)
++.+|.+.|+||++|++|+++++++.+.+++
T Consensus 113 -~~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~ 143 (283)
T PLN00182 113 -RRFPWYQVPLYIGAQLTGSLLASLTLRLMFN 143 (283)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6678999999999999999999988887664
No 22
>PLN00027 aquaporin TIP; Provisional
Probab=99.53 E-value=2e-14 Score=122.48 Aligned_cols=109 Identities=19% Similarity=0.269 Sum_probs=76.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhc--chhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHH
Q 036381 119 LDTGVALWLEIFCSFVFLFASMWMAFD--ERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAF 196 (235)
Q Consensus 119 ~~~~~~~~~E~i~T~ilv~~~~~~~~~--~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~ 196 (235)
.+..++++.|+++|++|++++++.... +...+........+.+++.+|+.+.+...... ++||+|+||||++++.+
T Consensus 17 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~--~iSGah~NPAvtl~~~~ 94 (252)
T PLN00027 17 PDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGA--NISGGHVNPAVTFGAFI 94 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHc--ccCccccChHHHHHHHH
Confidence 346789999999999999998876431 11111000000122344445554444444444 88999999999999998
Q ss_pred hhCCCCCCceeeeehhHHHHHHHHHHHHHHhcCC
Q 036381 197 VRGGHLWDRHWVFWAGPATACVAFALYIKLIPSQ 230 (235)
Q Consensus 197 ~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~~ 230 (235)
. |+..|.+.|+||++|++|+++++++++.+.+.
T Consensus 95 ~-g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 127 (252)
T PLN00027 95 G-GNITLLRGILYWIAQLLGSVVACLLLKFSTGG 127 (252)
T ss_pred h-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4 66688999999999999999999988877643
No 23
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.53 E-value=1.2e-14 Score=126.28 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=78.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhcchhhh-hhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHh
Q 036381 119 LDTGVALWLEIFCSFVFLFASMWMAFDERQAK-ALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFV 197 (235)
Q Consensus 119 ~~~~~~~~~E~i~T~ilv~~~~~~~~~~~~~~-~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~ 197 (235)
.+..+.++.|+++|++|++++++...+....+ ..+ .+.+++.+|+.+.+.....+ ++||+|+|||+++++++.
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~----~~~ial~~Glav~~~i~~~g--~iSG~h~NPAVTla~~l~ 120 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGD----YLAITIGWGLGVTFGLLVSA--GISGGHLNPAVTLGNAVF 120 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC----cHHHHHHHHHHHHHHHHHhc--ccCcCccCHHHHHHHHHh
Confidence 34568999999999999998887654322111 111 12344445555555444444 889999999999999997
Q ss_pred hCCCCCCceeeeehhHHHHHHHHHHHHHHhcCCC
Q 036381 198 RGGHLWDRHWVFWAGPATACVAFALYIKLIPSQH 231 (235)
Q Consensus 198 ~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~~~ 231 (235)
|+..|.+.|.||++|++|+++++++.+.+++++
T Consensus 121 -g~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~ 153 (294)
T PTZ00016 121 -GKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGF 153 (294)
T ss_pred -ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 666899999999999999999998887776653
No 24
>PRK05420 aquaporin Z; Provisional
Probab=99.52 E-value=3e-14 Score=119.91 Aligned_cols=103 Identities=19% Similarity=0.138 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCC
Q 036381 122 GVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGH 201 (235)
Q Consensus 122 ~~~~~~E~i~T~ilv~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~ 201 (235)
.+.++.|+++|++|++..++.....++.+..+. ..+.+++.+|+.+.+.....+ +.||+|+|||+++++.+. ++.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~--~~~~ial~~Gl~v~~~i~~~g--~iSG~h~NPAvtl~~~~~-~~i 76 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGI--GFLGVALAFGLTVLTMAYAVG--HISGGHFNPAVSVGLWAG-GRF 76 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCC--chHHHHHHHHHHHHHHHHHHh--CcccccCCHHHHHHHHHh-CCC
Confidence 578899999999999988876433211111111 122344555555555444444 899999999999999997 667
Q ss_pred CCCceeeeehhHHHHHHHHHHHHHHhcC
Q 036381 202 LWDRHWVFWAGPATACVAFALYIKLIPS 229 (235)
Q Consensus 202 ~~~~~wvy~v~p~~Ga~~a~~~~~~l~~ 229 (235)
+|.+.|+||++|++|+++++.+.+.+++
T Consensus 77 ~~~~~~~Y~~aQ~lGa~~ga~l~~~~~~ 104 (231)
T PRK05420 77 PAKELVPYIIAQVVGGIAAAAVLYLIAS 104 (231)
T ss_pred CHHHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999966665543
No 25
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.51 E-value=2.1e-14 Score=120.82 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhhh--hhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCC
Q 036381 123 VALWLEIFCSFVFLFASMWMAFDERQAK--ALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGG 200 (235)
Q Consensus 123 ~~~~~E~i~T~ilv~~~~~~~~~~~~~~--~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~ 200 (235)
|.++.|+++|+++++..++...+++..+ ..+....++.+|+.+...++ ... +.||+++|||+++++.+. ++
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~----~~~--~~sga~~NPa~t~~~~~~-~~ 73 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVY----AVG--HISGGHINPAVTLALAVG-GR 73 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHH----Hhc--cCCCCeEcHHHHHHHHHh-CC
Confidence 3578999999999999988766544322 11111223444444444433 333 889999999999999997 56
Q ss_pred CCCCceeeeehhHHHHHHHHHHHHHHhcCCC
Q 036381 201 HLWDRHWVFWAGPATACVAFALYIKLIPSQH 231 (235)
Q Consensus 201 ~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~~~ 231 (235)
.+|.+.|+||++|++|+++++++++.+++++
T Consensus 74 ~~~~~~~~y~~aq~~Ga~~~~~~~~~~~~~~ 104 (228)
T cd00333 74 FPLIRVIPYIIAQLLGAILGAALLYGLYYGL 104 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 6899999999999999999999888877654
No 26
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.46 E-value=1.1e-13 Score=115.57 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhh---hhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCC
Q 036381 127 LEIFCSFVFLFASMWMAFDERQAK---ALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLW 203 (235)
Q Consensus 127 ~E~i~T~ilv~~~~~~~~~~~~~~---~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~ 203 (235)
.|+++|++|+++.+....+.+.++ ..++. ....+++.+++.+........ +.||+|+||||++++.+. ++.+|
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~l~~Gl~v~~~~~~~~--~~sg~h~NPavt~~~~l~-~~~~~ 76 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGG-QFLGVALAFGLAVATLVYCVG--GISGAHLNPAVTIALLLG-RRFPL 76 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCc-chHHHHHHHHHHHHHHHHHHh--cccccccCHHHHHHHHHh-CCCCH
Confidence 499999999999988766522211 11100 122344455554444444433 789999999999999997 56689
Q ss_pred CceeeeehhHHHHHHHHHHHHHHhcCCCC
Q 036381 204 DRHWVFWAGPATACVAFALYIKLIPSQHL 232 (235)
Q Consensus 204 ~~~wvy~v~p~~Ga~~a~~~~~~l~~~~~ 232 (235)
.+.|+||++|++|+++++++++.++++++
T Consensus 77 ~~~~~y~~aQ~~Ga~~~~~~~~~~~~~~~ 105 (216)
T TIGR00861 77 KRVPVYIVAQLIGAILGAALLYGLTSGLF 105 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 99999999999999999998888887654
No 27
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.1e-13 Score=116.02 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=83.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhC
Q 036381 120 DTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRG 199 (235)
Q Consensus 120 ~~~~~~~~E~i~T~ilv~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g 199 (235)
+..+-++.|+++|++|++...+........+..+.......+.+.+|+.+.+.....+ ++||+|+|||.+++.++. |
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g--~iSGaHlNPAVTi~la~~-g 79 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFG--GISGAHLNPAVTIALAVR-G 79 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhcc--CcCccccChHHHHHHHHh-C
Confidence 3456679999999999998877665332211111112234566777777777766666 999999999999999996 7
Q ss_pred CCCCCceeeeehhHHHHHHHHHHHHHHhcCCCCC
Q 036381 200 GHLWDRHWVFWAGPATACVAFALYIKLIPSQHLH 233 (235)
Q Consensus 200 ~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~~~~~ 233 (235)
+.+|.+...||++|++|+++++.+...+++++++
T Consensus 80 ~fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~ 113 (241)
T COG0580 80 RFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKIL 113 (241)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 7899999999999999999999877777766644
No 28
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.34 E-value=2.7e-12 Score=107.72 Aligned_cols=108 Identities=22% Similarity=0.212 Sum_probs=85.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHh
Q 036381 118 GLDTGVALWLEIFCSFVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFV 197 (235)
Q Consensus 118 ~~~~~~~~~~E~i~T~ilv~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~ 197 (235)
..+.+|+++.||++|++++|+.++.+....+.... ..-+.+.++.++.+++.....+ .+||+|+|||.+++..+.
T Consensus 7 ~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~---~~l~~ial~~Gl~v~v~i~~~g--~iSGaH~NPAVT~a~~~~ 81 (238)
T KOG0223|consen 7 SVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGP---VGLLGIALAFGLAVFVLVYSTG--HISGAHFNPAVTLAFAVG 81 (238)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC---chhHHHHHHHHHHHHHHHhhhc--cccccccCHHHHHHHHHh
Confidence 36789999999999999999998776543321111 1124566777777777666665 899999999999999996
Q ss_pred hCCCCCCceeeeehhHHHHHHHHHHHHHHhcCCC
Q 036381 198 RGGHLWDRHWVFWAGPATACVAFALYIKLIPSQH 231 (235)
Q Consensus 198 ~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~~~ 231 (235)
|+..+.+...||++|++|+++++.+.|.+.+++
T Consensus 82 -~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~ 114 (238)
T KOG0223|consen 82 -GKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQ 114 (238)
T ss_pred -CCCcHHHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence 667888999999999999999999999888874
No 29
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.34 E-value=2.2e-13 Score=115.81 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=77.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhcchhhhhh--hhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHH
Q 036381 119 LDTGVALWLEIFCSFVFLFASMWMAFDERQAKAL--ARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAF 196 (235)
Q Consensus 119 ~~~~~~~~~E~i~T~ilv~~~~~~~~~~~~~~~~--~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~ 196 (235)
....+.+++||++|++|++..++...+...++.. +.....+..|+.+.+.++++ + .+||+|+|||.+++..+
T Consensus 29 ~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyva----g--~iSGgHlNPAVS~a~~~ 102 (316)
T KOG0224|consen 29 NELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVA----G--RISGGHLNPAVSLAMCI 102 (316)
T ss_pred HHHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhh----c--cccccccCHHHHHHHHH
Confidence 3578899999999999999888766543333211 11111234455555555554 3 89999999999999999
Q ss_pred hhCCCCCCceeeeehhHHHHHHHHHHHHHHhcCCC
Q 036381 197 VRGGHLWDRHWVFWAGPATACVAFALYIKLIPSQH 231 (235)
Q Consensus 197 ~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~~~ 231 (235)
+ |+.+|.++.+|.++|++||.+++.....++.|.
T Consensus 103 ~-g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~ 136 (316)
T KOG0224|consen 103 L-GRLPWKKFPVYVLAQFIGAFLGAATVYGLYYDA 136 (316)
T ss_pred h-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 778999999999999999999887655555443
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.25 E-value=7.8e-12 Score=104.97 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=76.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhh--cchhhh-hhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhH
Q 036381 119 LDTGVALWLEIFCSFVFLFASMWMAF--DERQAK-ALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPA 195 (235)
Q Consensus 119 ~~~~~~~~~E~i~T~ilv~~~~~~~~--~~~~~~-~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a 195 (235)
.+..|.++.|+++|+++++..+.... ++..++ ..+.......+++..++.+.+...... +.||+|+|||.+++..
T Consensus 5 ~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~--~iSGaH~NPaVTla~~ 82 (227)
T PF00230_consen 5 PSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFG--PISGAHFNPAVTLAFA 82 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHH--HHHTSS-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhh--hccccccccchhhhee
Confidence 46789999999999999998876433 222111 000001123344444444444444333 7899999999999999
Q ss_pred HhhCCCCCCceeeeehhHHHHHHHHHHHHHHhcCC
Q 036381 196 FVRGGHLWDRHWVFWAGPATACVAFALYIKLIPSQ 230 (235)
Q Consensus 196 ~~~g~~~~~~~wvy~v~p~~Ga~~a~~~~~~l~~~ 230 (235)
+. |+.+|.+...|+++|++|+++++.+.+.++++
T Consensus 83 l~-g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~ 116 (227)
T PF00230_consen 83 LT-GRISWKKAIVYIIAQFLGAFLGALLVYALYPD 116 (227)
T ss_dssp HT-TSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTH
T ss_pred ee-eeecccceeeEEeeccccccccccchhhcccC
Confidence 96 77789999999999999999999888887776
No 31
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=56.12 E-value=1e+02 Score=26.54 Aligned_cols=165 Identities=16% Similarity=0.164 Sum_probs=76.3
Q ss_pred HHHHHHhccCCccchhhheeccchhHHHhhhhhhhhcccchhhhhcCCCceEEEeeccCCCCcccCCchhhHHHHHHHHH
Q 036381 53 TFSAALIGHMTVTRAAIYILAQCVGGVFGALAPKAVVSTKIEHAFSLGGRTLIVVEQQPNGPVELGLDTGVALWLEIFCS 132 (235)
Q Consensus 53 Tla~~~~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~E~i~T 132 (235)
...-...+++++++.+--+.-=.+|=++|+.++..++.-........+...... ..-... ..+.+..+.|.--.++-
T Consensus 93 ~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~~~~~~~-~~~a~~--K~~~t~~~~F~~GI~cN 169 (265)
T COG2116 93 LTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANGQWGLFV-LGVAEH--KLHHTFLEAFAKGILCN 169 (265)
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccchhHHHH-HHHHHH--hcCchHHHHHHHHHHHH
Confidence 333456789999998888777777777777776655521110000000000000 000000 01245566666666666
Q ss_pred HHHHHHHHHHhhcchhhhhhhhhhHHHHHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCc-eeeee-
Q 036381 133 FVFLFASMWMAFDERQAKALARVSVCIILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDR-HWVFW- 210 (235)
Q Consensus 133 ~ilv~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~-~wvy~- 210 (235)
++..+.+.. ...-+... + ..+........|+.. ++.=..-|-..-.-.+...+...|.+ .|--+
T Consensus 170 ~lVclAvwm-~~~~k~~~--~-----K~~~m~~pv~~Fv~~------GfeH~VANm~~i~~~~~~~~~~~~~~fi~~Nli 235 (265)
T COG2116 170 WLVCLAVWM-SYSAKDGA--A-----KIFAIILPVMLFVAS------GFEHSVANMFMIPWAAVFSGALTWADFILKNLI 235 (265)
T ss_pred HHHHHHHHH-Hhcccchh--h-----HHHHHHHHHHHHHHc------CCceeeehHHHHHHHHHcCChhhhHHHHHHHHH
Confidence 665555443 32211111 1 122233333334332 22222345332222334334445555 22111
Q ss_pred ---hhHHH-HHHHHHHHHHHhcCCCCCC
Q 036381 211 ---AGPAT-ACVAFALYIKLIPSQHLHT 234 (235)
Q Consensus 211 ---v~p~~-Ga~~a~~~~~~l~~~~~~~ 234 (235)
+|=++ |+++-++.|.++++++-+.
T Consensus 236 pv~lGNivGG~v~vgl~Y~~~~~~~~~~ 263 (265)
T COG2116 236 PVTLGNIVGGAVFVGLMYWYLYRKQNRY 263 (265)
T ss_pred HHHHhchhcchhhhhHHHHHhccccccc
Confidence 33344 4667889999999887543
No 32
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=54.63 E-value=5.2 Score=29.92 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.2
Q ss_pred cCccccccchHHHHHHHHhccC
Q 036381 41 FPISGGHINPLVTFSAALIGHM 62 (235)
Q Consensus 41 ~~iSGah~NPavTla~~~~g~~ 62 (235)
+.-|+||+||.+.++..+.++-
T Consensus 5 ~~Gt~Ghv~P~lala~~L~~rG 26 (139)
T PF03033_consen 5 TGGTRGHVYPFLALARALRRRG 26 (139)
T ss_dssp EESSHHHHHHHHHHHHHHHHTT
T ss_pred EcCChhHHHHHHHHHHHHhccC
Confidence 3447899999999999998753
No 33
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=34.08 E-value=14 Score=32.90 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=18.6
Q ss_pred hhcCccccccchHHHHHHHHhcc
Q 036381 39 ATFPISGGHINPLVTFSAALIGH 61 (235)
Q Consensus 39 ~~~~iSGah~NPavTla~~~~g~ 61 (235)
+.+.-+|||+.||+.++-.+..+
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHhC
Confidence 34555899999999999998753
No 34
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=27.95 E-value=78 Score=18.22 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=16.1
Q ss_pred ehhHHHHHHHHHHHHHHhcCC
Q 036381 210 WAGPATACVAFALYIKLIPSQ 230 (235)
Q Consensus 210 ~v~p~~Ga~~a~~~~~~l~~~ 230 (235)
..+|.+++++++++...+..+
T Consensus 14 LAAP~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 14 LAAPIIAGIIASLIVGWLRNR 34 (35)
T ss_pred hHhHHHHHHHHHHHHHHHHhc
Confidence 368999999999887766543
No 35
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=25.81 E-value=1.7e+02 Score=23.88 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=21.5
Q ss_pred ccCCccchhhheeccchhHHHhhhhhh
Q 036381 60 GHMTVTRAAIYILAQCVGGVFGALAPK 86 (235)
Q Consensus 60 g~~~~~~~~~yi~aQ~~Ga~~g~~~~~ 86 (235)
++++|+....+...-+.|+.+|..+..
T Consensus 59 ~~i~~~~~~~~~~~~~~g~~iG~~l~~ 85 (240)
T PF01925_consen 59 GNIDWKIVLPLIIGALIGVVIGAWLLS 85 (240)
T ss_pred cccchhhhhhhhhHhHHHHHHHHhhhc
Confidence 347999999999998999988875544
No 36
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=24.99 E-value=6.1e+02 Score=24.23 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=22.0
Q ss_pred CCccchhhheeccchhHHHhhhhhhhhccc
Q 036381 62 MTVTRAAIYILAQCVGGVFGALAPKAVVST 91 (235)
Q Consensus 62 ~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~ 91 (235)
.+.+....++.+.++|+.+|......++|.
T Consensus 384 ~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~ 413 (650)
T PF04632_consen 384 NPAPALRLFLIGALLGAVLAFLYLFFVLPH 413 (650)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 355556666666789999998888878774
No 37
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=24.23 E-value=2.3e+02 Score=22.81 Aligned_cols=59 Identities=19% Similarity=0.375 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCcCcchhhhhHHhhCCCCCCceeeeehhHHHH-------HHHHHHHHHHhcCC
Q 036381 160 ILGVVLGLLIFVSTTVTAQKGYGGAGRNPARCLGPAFVRGGHLWDRHWVFWAGPATA-------CVAFALYIKLIPSQ 230 (235)
Q Consensus 160 ~ig~~~~~~v~~~~~~~~~~~~sG~~lNPAr~lg~a~~~g~~~~~~~wvy~v~p~~G-------a~~a~~~~~~l~~~ 230 (235)
.-|+.+++.-+..... ++| ...|..=+-|-.. | +|++-| .|.++| +++++++|+.+.++
T Consensus 29 ~gGliWs~v~yl~y~f----~FT--~v~P~~ll~Pf~~-g--~wk~t~---~G~~igi~~~gv~Si~aAllY~~~l~k 94 (173)
T PF11085_consen 29 FGGLIWSLVRYLAYFF----HFT--EVGPNFLLEPFAL-G--DWKNTW---LGNLIGIVFIGVFSIVAALLYYALLKK 94 (173)
T ss_pred HHHHHHHHHHHHHHHh----ccc--ccccChhhhhhhc-c--chhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554433 333 4677766666554 4 677666 444444 56788888877654
No 38
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=23.56 E-value=1.4e+02 Score=19.90 Aligned_cols=24 Identities=25% Similarity=0.656 Sum_probs=14.9
Q ss_pred chhhhhHHhhCCCCCCceeeeehh
Q 036381 189 ARCLGPAFVRGGHLWDRHWVFWAG 212 (235)
Q Consensus 189 Ar~lg~a~~~g~~~~~~~wvy~v~ 212 (235)
..++|-++.....-+.+-+-||+|
T Consensus 9 ~~tlG~~vL~~rG~~~~~~WyWIg 32 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYWYWIG 32 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcEEeeh
Confidence 478888887633244444558865
Done!