BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036387
(334 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356540980|ref|XP_003538962.1| PREDICTED: photosystem II stability/assembly factor HCF136,
chloroplastic-like [Glycine max]
Length = 352
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/314 (62%), Positives = 227/314 (72%), Gaps = 55/314 (17%)
Query: 68 RRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDL 127
RR+F+++TA LS+S+ A A++E+ALS WERVY+P+DPGVVLLDIAFVPDD
Sbjct: 47 RRRFIAETAALSVSLPQLA--------ARAEDALSEWERVYLPIDPGVVLLDIAFVPDDP 98
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
NHGFLLGTRQT+LETKDGG TWAPRSIPSAE+EDFNYRFNSISFKGKEGWIVGKPAILL+
Sbjct: 99 NHGFLLGTRQTILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLY 158
Query: 188 TSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG-----------WRA------- 229
TSDAG+SWERIPLS++LPGDM + + A + + G WRA
Sbjct: 159 TSDAGDSWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVS 218
Query: 230 ----------------------------DGGLWLLVRGGGLFLSKGTG-ITEEFEEVPVQ 260
DG + G +L+ G +TEEFEEVPVQ
Sbjct: 219 ATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQLTEEFEEVPVQ 278
Query: 261 SRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKG 320
SRGFGILDVGYRS DEAWAAGGSG+LL+TTNGGK+WIR+KAADNIAANLYSVKFI+EKKG
Sbjct: 279 SRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGKSWIRDKAADNIAANLYSVKFIDEKKG 338
Query: 321 FVLGNDGVLLQYLG 334
FVLGNDGVLL+YLG
Sbjct: 339 FVLGNDGVLLRYLG 352
>gi|224096552|ref|XP_002310654.1| predicted protein [Populus trichocarpa]
gi|222853557|gb|EEE91104.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 183/398 (45%), Positives = 220/398 (55%), Gaps = 99/398 (24%)
Query: 31 AQAQQPRFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGL 90
A P F + +R P + S S S LNRR F+SQTA+LS L+
Sbjct: 2 ASLTSPTFTTNTRCLQRPQNSHSPSQQPRLSQRPELNRRHFISQTASLSSLPLLSPLILN 61
Query: 91 YEQP-AKSEEALSAWERVYIPVDPGVVLLDIAFVP------------------------- 124
+Q A +E++LS WERVY+P+DPGVVLLDIAFVP
Sbjct: 62 PQQANAAAEDSLSEWERVYLPIDPGVVLLDIAFVPDDTNHGFLLGTRQTIMETKDGGNTW 121
Query: 125 ----------DDLNH-----------GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
+D N+ G+++G LL T D G+TW + + D
Sbjct: 122 VQRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTADSGETWERIPLSAQLPGDMV 181
Query: 164 YRFNSISFKG-KEGWIVGKPAILLHTSDAGESW--------------------------- 195
Y I G K +V + TS+ G +W
Sbjct: 182 Y----IKATGEKSAEMVTDEGAIYITSNRGYNWRAAVQESVSATLNRTVSSGISGASYYT 237
Query: 196 ------ERIPLSSQL-------------PGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
R P + + PG AFWQPHNRA+ARRIQNMGWRADGGLWLL
Sbjct: 238 GTFNTVNRSPNGNYVAVSSRGNFYLTWEPG-QAFWQPHNRAIARRIQNMGWRADGGLWLL 296
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
VRGGGL+LSKGTGI+EEFEE+PVQSRGFGILDVGYRS++EAWAAGGSGVLL+TTNGGKTW
Sbjct: 297 VRGGGLYLSKGTGISEEFEEIPVQSRGFGILDVGYRSKEEAWAAGGSGVLLRTTNGGKTW 356
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
R+KAADNIAANLYSVKFI++KKGFVLGNDGVLL+YLG
Sbjct: 357 TRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 394
>gi|225423755|ref|XP_002278958.1| PREDICTED: photosystem II stability/assembly factor HCF136,
chloroplastic [Vitis vinifera]
gi|297737938|emb|CBI27139.3| unnamed protein product [Vitis vinifera]
Length = 404
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 188/429 (43%), Positives = 232/429 (54%), Gaps = 123/429 (28%)
Query: 3 SSLRLSE---PMMLVKPSLSSLFAPRLNRTNAQAQQPRFISTSRACSLPSSDSSSSSSSS 59
++L+LS+ P++ +KPSL S F +R A + R + RAC
Sbjct: 2 ATLQLSDYCNPVVALKPSLKSFFIKTDHRNCCGASRVRVVP--RACL------------- 46
Query: 60 SSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEAL-SAWERVYIPVDPGVVLL 118
SL RR +++TA +IS+A E PAKSEE L S WERVY+P+DPGVVLL
Sbjct: 47 --QKPSLTRRHLLAETA----AISVAPLILGIEPPAKSEEPLLSEWERVYLPIDPGVVLL 100
Query: 119 DIAFVP-----------------------------------DDLNH-----------GFL 132
DIAFVP +D N+ G++
Sbjct: 101 DIAFVPDDLSHGFLLGTRQTIMETKDGGNTWVPRSIPSAEDEDFNYRFNSISFKGKEGWI 160
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G LL T D G++W + + D Y I G K +V + TS+
Sbjct: 161 VGKPSILLYTSDAGESWERIPLSAQLPGDIVY----IKATGEKSAEMVTDEGAIYVTSNR 216
Query: 192 GESWE---------------------------------RIPLSSQL-------------P 205
G +W R P S + P
Sbjct: 217 GYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEP 276
Query: 206 GDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFG 265
G +WQPHNRAVARRIQNMGWRADGGLWLLVRGGGL+LSKGTGI+E+FEE+PVQSRGFG
Sbjct: 277 G-QPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGISEDFEEIPVQSRGFG 335
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
ILDVGYRS++EAWAAGGSGVLL+TTNGGKTW R+KAADNIAANLYSVKFI++ KGFVLGN
Sbjct: 336 ILDVGYRSKEEAWAAGGSGVLLRTTNGGKTWTRDKAADNIAANLYSVKFIDDTKGFVLGN 395
Query: 326 DGVLLQYLG 334
DGVLL++LG
Sbjct: 396 DGVLLRFLG 404
>gi|242097170|ref|XP_002439075.1| hypothetical protein SORBIDRAFT_10g031120 [Sorghum bicolor]
gi|241917298|gb|EER90442.1| hypothetical protein SORBIDRAFT_10g031120 [Sorghum bicolor]
Length = 397
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 168/374 (44%), Positives = 211/374 (56%), Gaps = 96/374 (25%)
Query: 53 SSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVD 112
++ S S+ ++S++RR+F++ TA + L A ALS WERV++P+D
Sbjct: 28 AAHSESTPPGAASVDRRRFIAHTAAAAAVSPLVLPRWTPAARADGAPALSEWERVFLPID 87
Query: 113 PGVVLLDIAFVPD-----------------------------------DLNH-------- 129
PGVVLLDIAFVPD D N+
Sbjct: 88 PGVVLLDIAFVPDDPSHGFLLGTRQTILETKDGGNTWFPRSIPSAEDEDFNYRFNSVSFK 147
Query: 130 ---GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILL 186
G+++G LL T D G++W IP + + N + + + + + AI +
Sbjct: 148 GKEGWIIGKPAILLHTSDAGESW--ERIPLSAQLPGNMVYIKATGEQSAEMVTDEGAIYV 205
Query: 187 HTSDAGESWE---------------------------------------RIPLSSQ---- 203
TS+ G +W+ + +SS+
Sbjct: 206 -TSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFY 264
Query: 204 ---LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQ 260
PG FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI+E+FEEV VQ
Sbjct: 265 LTWEPG-QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEDFEEVQVQ 323
Query: 261 SRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKG 320
SRGFGILDVGYRSQ+EAWAAGGSGVLLKTTNGGK W+R+KAADNIAANLYSVKF+++ KG
Sbjct: 324 SRGFGILDVGYRSQEEAWAAGGSGVLLKTTNGGKNWVRDKAADNIAANLYSVKFLDDSKG 383
Query: 321 FVLGNDGVLLQYLG 334
FVLGNDGVLL+YLG
Sbjct: 384 FVLGNDGVLLRYLG 397
>gi|413943044|gb|AFW75693.1| plastid high chlorophyll fluorescence 136 Precursor [Zea mays]
Length = 394
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 166/373 (44%), Positives = 212/373 (56%), Gaps = 96/373 (25%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
++ S S+ ++S++RR+F++ TA + L A ALS WER+++P+D
Sbjct: 26 AAHSESAPPAASVDRRRFIAHTAAAAAVSPLVLPRWTPAARADEAPALSEWERIFLPIDS 85
Query: 114 GVVLLDIAFVPD-----------------------------------DLNH--------- 129
GVVLLDIAFVPD D N+
Sbjct: 86 GVVLLDIAFVPDDPSHGFLLGTRQTILETKDGGNTWFPRSIPSAEDEDFNYRFNSVSFKG 145
Query: 130 --GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
G+++G LL T D G++W IP + + N + + + + + AI +
Sbjct: 146 REGWIIGKPAILLHTSDAGESW--ERIPLSAQLPGNMVYIKATGEQSAEMVTDEGAIYV- 202
Query: 188 TSDAGESWE---------------------------------------RIPLSSQ----- 203
TS+ G +W+ + +SS+
Sbjct: 203 TSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSADGRYVAVSSRGNFYL 262
Query: 204 --LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQS 261
PG FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS+GTGITE+FEEV VQS
Sbjct: 263 TWEPG-QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSRGTGITEDFEEVQVQS 321
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGF 321
RGFGILDVGYRSQ+EAWAAGGSGVLLKTTNGGK+W+R+KAADNIAANLYSVKF++++KGF
Sbjct: 322 RGFGILDVGYRSQEEAWAAGGSGVLLKTTNGGKSWMRDKAADNIAANLYSVKFLDDRKGF 381
Query: 322 VLGNDGVLLQYLG 334
VLGNDGVLL+YLG
Sbjct: 382 VLGNDGVLLRYLG 394
>gi|148251625|gb|ABQ53629.1| plastid high chlorophyll fluorescence 136 precursor [Zea mays]
Length = 394
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 166/373 (44%), Positives = 212/373 (56%), Gaps = 96/373 (25%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
++ S S+ ++S++RR+F++ TA + L A ALS WER+++P+D
Sbjct: 26 AAHSESAPPAASVDRRRFIAHTAAAAAVSPLVLPRWTPAARADEVPALSEWERIFLPIDS 85
Query: 114 GVVLLDIAFVPD-----------------------------------DLNH--------- 129
GVVLLDIAFVPD D N+
Sbjct: 86 GVVLLDIAFVPDDPSHGFLLGTRQTILETKDGGNTWFPRSIPSAEDEDFNYRFNSVSFKG 145
Query: 130 --GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
G+++G LL T D G++W IP + + N + + + + + AI +
Sbjct: 146 REGWIIGKPAILLHTSDAGESW--ERIPLSAQLPGNMVYIKATGEQSAEMVTDEGAIYV- 202
Query: 188 TSDAGESWE---------------------------------------RIPLSSQ----- 203
TS+ G +W+ + +SS+
Sbjct: 203 TSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSADGRYVAVSSRGNFYL 262
Query: 204 --LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQS 261
PG FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS+GTGITE+FEEV VQS
Sbjct: 263 TWEPG-QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSRGTGITEDFEEVQVQS 321
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGF 321
RGFGILDVGYRSQ+EAWAAGGSGVLLKTTNGGK+W+R+KAADNIAANLYSVKF++++KGF
Sbjct: 322 RGFGILDVGYRSQEEAWAAGGSGVLLKTTNGGKSWMRDKAADNIAANLYSVKFLDDRKGF 381
Query: 322 VLGNDGVLLQYLG 334
VLGNDGVLL+YLG
Sbjct: 382 VLGNDGVLLRYLG 394
>gi|218198925|gb|EEC81352.1| hypothetical protein OsI_24541 [Oryza sativa Indica Group]
Length = 1485
Score = 263 bits (672), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 153/325 (47%), Positives = 185/325 (56%), Gaps = 96/325 (29%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVP----------------------------------- 124
+LS WERV +P+DPGVVLLDIAFVP
Sbjct: 72 SLSEWERVLLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAED 131
Query: 125 DDLNH-----------GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
+D N+ G+++G LL T D G +W IP + + N + + +
Sbjct: 132 EDFNYRFNSVSFMGKEGWIIGKPAILLHTSDAGDSW--ERIPLSAQLPGNMVYIKATGEQ 189
Query: 174 KEGWIVGKPAILLHTSDAGESWE------------------------------------- 196
+ + AI + TS+ G +W+
Sbjct: 190 SAEMVTDEGAIYV-TSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPD 248
Query: 197 --RIPLSSQ-------LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG 247
+ +SS+ PG FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG
Sbjct: 249 GRYVAVSSRGNFYLTWEPG-QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG 307
Query: 248 TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAA 307
+GITE+FEE VQSRGFGILDVGYRS+DEAWAAGGSGVLLKTTNGGKTW+R+KAADNIAA
Sbjct: 308 SGITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWVRDKAADNIAA 367
Query: 308 NLYSVKFINEKKGFVLGNDGVLLQY 332
NLYSVKF+ + KG+VLGNDGVLL+Y
Sbjct: 368 NLYSVKFLGDNKGYVLGNDGVLLRY 392
>gi|222636266|gb|EEE66398.1| hypothetical protein OsJ_22738 [Oryza sativa Japonica Group]
Length = 1553
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 153/325 (47%), Positives = 185/325 (56%), Gaps = 96/325 (29%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVP----------------------------------- 124
+LS WERV +P+DPGVVLLDIAFVP
Sbjct: 72 SLSEWERVLLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAED 131
Query: 125 DDLNH-----------GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
+D N+ G+++G LL T D G +W IP + + N + + +
Sbjct: 132 EDFNYRFNSVSFMGKEGWIIGKPAILLHTSDAGDSW--ERIPLSAQLPGNMVYIKATGEQ 189
Query: 174 KEGWIVGKPAILLHTSDAGESWE------------------------------------- 196
+ + AI + TS+ G +W+
Sbjct: 190 SAEMVTDEGAIYV-TSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPD 248
Query: 197 --RIPLSSQ-------LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG 247
+ +SS+ PG FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG
Sbjct: 249 GRYVAVSSRGNFYLTWEPG-QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG 307
Query: 248 TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAA 307
+GITE+FEE VQSRGFGILDVGYRS+DEAWAAGGSGVLLKTTNGGKTW+R+KAADNIAA
Sbjct: 308 SGITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWVRDKAADNIAA 367
Query: 308 NLYSVKFINEKKGFVLGNDGVLLQY 332
NLYSVKF+ + KG+VLGNDGVLL+Y
Sbjct: 368 NLYSVKFLGDNKGYVLGNDGVLLRY 392
>gi|357117071|ref|XP_003560298.1| PREDICTED: photosystem II stability/assembly factor HCF136,
chloroplastic-like [Brachypodium distachyon]
Length = 339
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 191/344 (55%), Gaps = 98/344 (28%)
Query: 84 LAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPD------------------ 125
+AA L PA E LS W+RV +P+DPGVVLLDIAFVPD
Sbjct: 1 MAAAPLLPWTPAARAEDLSEWQRVKLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTILETK 60
Query: 126 -----------------DLNH-----------GFLLGTRQTLLETKDGGKTWAPRSIPSA 157
D N+ G+++G LL TKD G++W + +
Sbjct: 61 DGGNSWFPRSIPSAEDEDFNYRFNSVSFMGKEGWIVGKPAILLHTKDAGESWERIPLSAQ 120
Query: 158 EEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDAGESWE-------------------- 196
D Y I G++ +V + TS+ G +W+
Sbjct: 121 LPGDMVY----IQATGEQSAEMVTDEGAIYVTSNRGYNWKAAVQETVSATLNRTVSSGIS 176
Query: 197 -------------------RIPLSSQ-------LPGDMAFWQPHNRAVARRIQNMGWRAD 230
+ +SS+ PG + +WQPHNRAVARRIQNMGWRAD
Sbjct: 177 GASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQL-YWQPHNRAVARRIQNMGWRAD 235
Query: 231 GGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTT 290
GGLWLLVRGGGLFLSKGTGITEEFEE VQSRGFGILDVGYRS+DEAWAAGGSGVLLKT
Sbjct: 236 GGLWLLVRGGGLFLSKGTGITEEFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTM 295
Query: 291 NGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
NGGK+W+R+KAADNI NLYSVKF+ + +GFVLGNDGVLL+Y+G
Sbjct: 296 NGGKSWVRDKAADNIPGNLYSVKFVGDNQGFVLGNDGVLLRYVG 339
>gi|357473927|ref|XP_003607248.1| Photosystem II stability/assembly factor HCF136 [Medicago
truncatula]
gi|355508303|gb|AES89445.1| Photosystem II stability/assembly factor HCF136 [Medicago
truncatula]
Length = 396
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 174/398 (43%), Positives = 213/398 (53%), Gaps = 115/398 (28%)
Query: 40 STSRAC----SLPSSDSSSSSSS-------SSSSSSSLNRRQFVSQTATLSLSISLAATT 88
ST+ C LPSS S+ S +S S RRQF+++T +S+
Sbjct: 11 STTTLCRPLSQLPSSKSTIIHSPRPRSFVVKASLEPSRTRRQFIAETTAISVL------- 63
Query: 89 GLYEQPAKSEEALSAWERVY--------------IPVDPG--------VVLLDI-----A 121
L Q AKSEE LS WERVY +P DP LL+
Sbjct: 64 -LPSQLAKSEETLSEWERVYLPIDPGVVLLDIAFVPQDPNHGFLLGTRQTLLETKDGGRT 122
Query: 122 FVP--------DDLNH-----------GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
+ P +D N+ G+++G LL T D G++W + + D
Sbjct: 123 WAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTPDAGESWERIPLSAELPGDM 182
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESWE-------------------------- 196
Y + + K E +V + TS+ G +W+
Sbjct: 183 VY-IKATNEKSAE--MVTDEGAIYVTSNRGYNWKAAVQESVSATLNRTVSSGISGASYYT 239
Query: 197 -------------RIPLSSQ-------LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
+ +SS+ PG A+WQPHNRAVARRIQNMGWRADGGLWLL
Sbjct: 240 GTFNTVNRSPDGRYVAVSSRGNFYMTWEPG-QAYWQPHNRAVARRIQNMGWRADGGLWLL 298
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
VRGG LFLSKGTGITEEFEE+PVQSRGFGILDVGYRS DEAWAAGGSG+LL+T NGGK+W
Sbjct: 299 VRGGSLFLSKGTGITEEFEEIPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTNNGGKSW 358
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
IR+KAADNIAANLYSVKFI++KKGFVLGNDGVLL+YLG
Sbjct: 359 IRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 396
>gi|449436353|ref|XP_004135957.1| PREDICTED: photosystem II stability/assembly factor HCF136,
chloroplastic-like [Cucumis sativus]
gi|449488796|ref|XP_004158174.1| PREDICTED: photosystem II stability/assembly factor HCF136,
chloroplastic-like [Cucumis sativus]
Length = 406
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/218 (64%), Positives = 165/218 (75%), Gaps = 19/218 (8%)
Query: 13 LVKPS-LSSLFAPRLNRTNAQAQQPRFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQF 71
L+KPS SSLFA + PR S S+ LP + SS++ +S +SS+NRR F
Sbjct: 8 LLKPSWTSSLFA--------SSTSPRH-SLSQPQLLPRT-LSSTTPKASLHNSSINRRHF 57
Query: 72 VSQTA---TLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
V+ TA +LSLS +A QPAKSEE+LS WER+Y+P+DPGVVLLDIAFVPDD+N
Sbjct: 58 VADTAAAVSLSLSPFIAPV-----QPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDMN 112
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHT 188
HGFLLGTRQT+LETKDGG+TWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILL+T
Sbjct: 113 HGFLLGTRQTILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYT 172
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
SDAGESWERIPLS+QLPGDM + + A + + G
Sbjct: 173 SDAGESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEG 210
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 116/125 (92%), Positives = 124/125 (99%)
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
FWQPHNRA+ARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI+EEFEEVPVQSRGFGILDV
Sbjct: 282 FWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDV 341
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
GYRS++EAWAAGGSGVLLKTTNGG++W R+KAADNIAANLYSVKFIN+KKGFVLGNDGVL
Sbjct: 342 GYRSKEEAWAAGGSGVLLKTTNGGRSWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVL 401
Query: 330 LQYLG 334
LQYLG
Sbjct: 402 LQYLG 406
>gi|356544404|ref|XP_003540641.1| PREDICTED: photosystem II stability/assembly factor HCF136,
chloroplastic-like [Glycine max]
Length = 393
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 115/125 (92%), Positives = 123/125 (98%)
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL+LSKG G+TEEFEEVPVQSRGFGILDV
Sbjct: 269 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGKGLTEEFEEVPVQSRGFGILDV 328
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
GYRS DEAWAAGGSG+LL+TTNGGK+WIR+KAADNIAANLYSVKFI+EKKGFVLGNDGVL
Sbjct: 329 GYRSTDEAWAAGGSGILLRTTNGGKSWIRDKAADNIAANLYSVKFIDEKKGFVLGNDGVL 388
Query: 330 LQYLG 334
L+YLG
Sbjct: 389 LRYLG 393
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/208 (59%), Positives = 151/208 (72%), Gaps = 22/208 (10%)
Query: 19 SSLFAPRLNRTNAQAQQPRFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATL 78
++LF P L T R S +R+ + +S S S SS RR+F+++TA L
Sbjct: 12 TTLFRPSLPST-------RTFSRNRSLIVKASSSEDDFSRSS-------RRRFIAETAAL 57
Query: 79 SLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQT 138
S+S L + A+SE+ALS WERVY+P+DPGVVLLDIAFVPDD NHGFLLGTRQT
Sbjct: 58 SVS--------LPQLTARSEDALSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQT 109
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
+LETKDGG TWAPRSIPSAE+EDFNYRFNSISFKGKEGWIVGKP+ILL+TSDAG+SWERI
Sbjct: 110 ILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPSILLYTSDAGDSWERI 169
Query: 199 PLSSQLPGDMAFWQPHNRAVARRIQNMG 226
PLS++LPGDM + + A + + G
Sbjct: 170 PLSAELPGDMVYIKATGEKSAEMVTDEG 197
>gi|255559812|ref|XP_002520925.1| Photosystem II stability/assembly factor HCF136, chloroplast
precursor, putative [Ricinus communis]
gi|223539891|gb|EEF41470.1| Photosystem II stability/assembly factor HCF136, chloroplast
precursor, putative [Ricinus communis]
Length = 397
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 125/205 (60%), Positives = 152/205 (74%), Gaps = 18/205 (8%)
Query: 24 PRLNRTNAQAQQPRFI--STSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLS 81
P LN++++ +Q RF+ ++ LP S LNRRQF+SQTAT+SL
Sbjct: 13 PFLNKSHSHSQS-RFVPKASLNNVHLPHHHS-------------LNRRQFLSQTATVSLP 58
Query: 82 ISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLE 141
L ++ + +QPA +EE LS WERVY+P DPGVVLLDIAFVPDD+NHGFLLGTRQT+LE
Sbjct: 59 --LLSSPLIIQQPANAEETLSEWERVYLPSDPGVVLLDIAFVPDDMNHGFLLGTRQTILE 116
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLS 201
TKDGG TW RSIPSAE+EDFNYRFNSISFKGKEGWIVGKPAILL+TSDAG+SW+RIPLS
Sbjct: 117 TKDGGNTWVSRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGDSWQRIPLS 176
Query: 202 SQLPGDMAFWQPHNRAVARRIQNMG 226
+QLPGDM + + A + + G
Sbjct: 177 AQLPGDMVYIKATGEKSAEMVTDQG 201
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 111/125 (88%), Positives = 122/125 (97%)
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL+LSKGTGI+E+FEE+ VQSRGFGILDV
Sbjct: 273 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGISEDFEEISVQSRGFGILDV 332
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
GYRS+DEAWAAGGSG+LL+TTNGGKTW R+KAAD+IAANLYSVKFIN+ KGFVLGNDGVL
Sbjct: 333 GYRSKDEAWAAGGSGILLRTTNGGKTWTRDKAADSIAANLYSVKFINDSKGFVLGNDGVL 392
Query: 330 LQYLG 334
L+YLG
Sbjct: 393 LRYLG 397
>gi|75252730|sp|Q5Z5A8.1|P2SAF_ORYSJ RecName: Full=Photosystem II stability/assembly factor HCF136,
chloroplastic; Flags: Precursor
gi|54291349|dbj|BAD62115.1| putative photosystem II stability/assembly factor HCF136,
chloroplast [Oryza sativa Japonica Group]
Length = 416
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 164/392 (41%), Positives = 209/392 (53%), Gaps = 120/392 (30%)
Query: 59 SSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEE--ALSAWERVYIPVDPGVV 116
+ + S S RR+F++ TAT S + ++ A++++ +LS WERV +P+DPGVV
Sbjct: 29 AHTDSISTGRRRFIADTATASAAAAVGPLVLPRTPLARADQPPSLSEWERVLLPIDPGVV 88
Query: 117 LLDIAFVP-----------------------------------DDLNH-----------G 130
LLDIAFVP +D N+ G
Sbjct: 89 LLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDEDFNYRFNSVSFMGKEG 148
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSD 190
+++G LL T D G +W IP + + N + + + + + AI + TS+
Sbjct: 149 WIIGKPAILLHTSDAGDSW--ERIPLSAQLPGNMVYIKATGEQSAEMVTDEGAIYV-TSN 205
Query: 191 AGESWE---------------------------------------RIPLSSQ-------L 204
G +W+ + +SS+
Sbjct: 206 RGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWE 265
Query: 205 PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTG--------------- 249
PG FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG+G
Sbjct: 266 PG-QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGFQFFYRGLNDAHAIS 324
Query: 250 -------ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
ITE+FEE VQSRGFGILDVGYRS+DEAWAAGGSGVLLKTTNGGKTW+R+KAA
Sbjct: 325 YLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWVRDKAA 384
Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
DNIAANLYSVKF+ + KG+VLGNDGVLL+Y+G
Sbjct: 385 DNIAANLYSVKFLGDNKGYVLGNDGVLLRYVG 416
>gi|168008222|ref|XP_001756806.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692044|gb|EDQ78403.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 434
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 154/366 (42%), Positives = 199/366 (54%), Gaps = 108/366 (29%)
Query: 66 LNRRQFVS-QTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVP 124
L+RR ++ TA LSL + G A ++E +S+WE+V +PVDPGVVLLD+AFVP
Sbjct: 80 LSRRSVLAASTAALSLGALSGGSDG--NDAALADETISSWEQVTLPVDPGVVLLDMAFVP 137
Query: 125 -----------------------------------DDLNH-----------GFLLGTRQT 138
+D N+ G+++G
Sbjct: 138 DQPDRGFLLGTRQTLLETKDGGRSWSPRSIPSAEDEDFNYRFNSISFQGQEGWIIGKPAI 197
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRF--NSISFKG---KEGWIVGKPAILLHTSDAGE 193
LL T +GG++W E + R N I+ +G + +V + TS+ G
Sbjct: 198 LLHTSNGGESW--------ERIPLSVRLPGNPITIRGTGPQSAEMVTDEGAIYVTSNNGY 249
Query: 194 SWERI-----------PLSSQLPG----------------------------------DM 208
+W+ +SS + G
Sbjct: 250 NWKAAVEETVSATLNRTVSSGISGASYYTGTLNTVNRSSAGDYVAVVSRGNFFLTWEPGQ 309
Query: 209 AFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILD 268
+WQPHNR ARRIQNMGWRADGGLWL+VRGGGLF+SKGTG+TE+F+E + SRGFGILD
Sbjct: 310 PYWQPHNRTSARRIQNMGWRADGGLWLVVRGGGLFVSKGTGVTEDFDEQKIPSRGFGILD 369
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
VGYRS+DEAWAAGGSG+LL+TT+GGK+WIR+K AD IAANLYSVKFIN+ KGFVLGNDGV
Sbjct: 370 VGYRSKDEAWAAGGSGILLRTTDGGKSWIRDKVADKIAANLYSVKFIND-KGFVLGNDGV 428
Query: 329 LLQYLG 334
LL+YLG
Sbjct: 429 LLRYLG 434
>gi|302800826|ref|XP_002982170.1| hypothetical protein SELMODRAFT_228809 [Selaginella moellendorffii]
gi|300150186|gb|EFJ16838.1| hypothetical protein SELMODRAFT_228809 [Selaginella moellendorffii]
Length = 402
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 164/410 (40%), Positives = 214/410 (52%), Gaps = 111/410 (27%)
Query: 18 LSSLFAPRLNRTNAQAQQPRFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVS-QTA 76
+ L PR NR++ A S+ RA +S SSSS + SS RR F+ A
Sbjct: 9 FAGLALPR-NRSSTAA------SSQRAAFARASCSSSSDQNQGSSVGCGGRRSFLGGAAA 61
Query: 77 TLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPD----------- 125
+ L I+L + + +EE LS WE+V +P+DPGVVLLD++FVPD
Sbjct: 62 SAGLVIALPTL-----RSSAAEEQLSQWEKVPLPIDPGVVLLDLSFVPDEPNRGFLLGTR 116
Query: 126 ------------------------DLNH-----------GFLLGTRQTLLETKDGGKTWA 150
D N+ G+++G LL T + G+TW
Sbjct: 117 QTLLETKDGGRSWAPRSVASAEEEDFNYRFNSISFKGKEGWIIGKPAILLHTSNAGETW- 175
Query: 151 PRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESW-------------- 195
IP + N I G K+ +V + TS+AG +W
Sbjct: 176 -ERIPLSSRLPGNPVV--IQATGDKQAEMVTDEGAIYVTSNAGYNWKAAVEETVSATLNR 232
Query: 196 -------------------------ERIPLSSQ-------LPGDMAFWQPHNRAVARRIQ 223
+ + +SS+ PG +WQPHNR ARRIQ
Sbjct: 233 TVSSGISGASYYTGTFNTVNRSPQGDYVAVSSRGNFYMTWEPG-QPYWQPHNRRSARRIQ 291
Query: 224 NMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS 283
NMGWRADGGLWL+VRGGGL+L K +G+ E+FEE + SRGFGILD+GYRS+DEAWAAGGS
Sbjct: 292 NMGWRADGGLWLVVRGGGLYLGKCSGVCEDFEEASIPSRGFGILDLGYRSKDEAWAAGGS 351
Query: 284 GVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
G+LLKTT+GG TW R++ AD+IAANLYSVKF++ KKGFVLGNDGVLL+YL
Sbjct: 352 GMLLKTTDGGNTWSRDRVADSIAANLYSVKFLDNKKGFVLGNDGVLLRYL 401
>gi|302765419|ref|XP_002966130.1| hypothetical protein SELMODRAFT_227615 [Selaginella moellendorffii]
gi|300165550|gb|EFJ32157.1| hypothetical protein SELMODRAFT_227615 [Selaginella moellendorffii]
Length = 402
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 163/410 (39%), Positives = 211/410 (51%), Gaps = 111/410 (27%)
Query: 18 LSSLFAPRLNRTNAQAQQPRFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVS-QTA 76
+ L PR NR++ A R T +CS SSS + SS RR F+ A
Sbjct: 9 FAGLALPR-NRSSTAASSQRAAFTRASCS------SSSDQNQGSSVGCGGRRSFLGGAAA 61
Query: 77 TLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPD----------- 125
+ L I+L + + +EE LS WE+V +P+DPGVVLLD++FVPD
Sbjct: 62 SAGLVIALPTL-----RSSAAEEQLSQWEKVPLPIDPGVVLLDLSFVPDEPNRGFLLGTR 116
Query: 126 ------------------------DLNH-----------GFLLGTRQTLLETKDGGKTWA 150
D N+ G+++G LL T + G+TW
Sbjct: 117 QTLLETKDGGRSWSPRSVASAEEEDFNYRFNSISFKGKEGWIIGKPAILLHTSNAGETW- 175
Query: 151 PRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESW-------------- 195
IP + N I G K+ +V + TS+AG +W
Sbjct: 176 -ERIPLSSRLPGNPVV--IQATGDKQAEMVTDEGAIYVTSNAGYNWKAAVEETVSATLNR 232
Query: 196 -------------------------ERIPLSSQ-------LPGDMAFWQPHNRAVARRIQ 223
+ + +SS+ PG +WQPHNR ARRIQ
Sbjct: 233 TVSSGISGASYYTGTFNTVNRSPQGDYVAVSSRGNFYMTWEPG-QPYWQPHNRRSARRIQ 291
Query: 224 NMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS 283
NMGWRADGGLWL+VRGGGL+L K G+ E+FEE + SRGFGILD+GYRS+DEAWAAGGS
Sbjct: 292 NMGWRADGGLWLVVRGGGLYLGKCLGVCEDFEEASIPSRGFGILDLGYRSKDEAWAAGGS 351
Query: 284 GVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
G+LLKTT+GG TW R++ AD+IAANLYSVKF++ KKGFVLGNDGVLL+YL
Sbjct: 352 GMLLKTTDGGNTWSRDRVADSIAANLYSVKFLDNKKGFVLGNDGVLLRYL 401
>gi|15237225|ref|NP_197703.1| photosystem II stability/assembly factor HCF136 [Arabidopsis
thaliana]
gi|6016183|sp|O82660.1|P2SAF_ARATH RecName: Full=Photosystem II stability/assembly factor HCF136,
chloroplastic; Flags: Precursor
gi|3559807|emb|CAA75723.1| HCF136 protein [Arabidopsis thaliana]
gi|9759370|dbj|BAB09829.1| photosystem II stability/assembly factor HCF136 [Arabidopsis
thaliana]
gi|15010780|gb|AAK74049.1| AT5g23120/MYJ24_11 [Arabidopsis thaliana]
gi|28416529|gb|AAO42795.1| At5g23120/MYJ24_11 [Arabidopsis thaliana]
gi|332005741|gb|AED93124.1| photosystem II stability/assembly factor HCF136 [Arabidopsis
thaliana]
Length = 403
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 109/125 (87%), Positives = 123/125 (98%)
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
+WQPHNRAVARRIQNMGWRADGGLWLLVRGGGL+LSKGTGITEEFEEVPVQSRGFGILDV
Sbjct: 279 YWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDV 338
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
GYRS++EAWAAGGSG+LL+T NGGK+W R+KAADNIAANLY+VKF+++KKGFVLGNDGVL
Sbjct: 339 GYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVL 398
Query: 330 LQYLG 334
L+Y+G
Sbjct: 399 LRYVG 403
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 131/228 (57%), Positives = 160/228 (70%), Gaps = 26/228 (11%)
Query: 3 SSLRLSEPMMLVKPSLSSLFAPRLNRTNAQAQQPRFISTSRACSL----PSSDSSSSSSS 58
+SL+L + +L KPS+S PRF+S + L SS S S S
Sbjct: 2 ASLQLCDGYLLFKPSVS----------------PRFLSQRISHRLIPKASSSPPPSPSPS 45
Query: 59 SSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLL 118
SSSSS S +RR+ + Q+A +SLS+S PA+++E LS WERV++P+DPGVVLL
Sbjct: 46 SSSSSLSFSRRELLYQSAAVSLSLSSIVG------PARADEQLSEWERVFLPIDPGVVLL 99
Query: 119 DIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWI 178
DIAFVPD+ + GFLLGTRQTLLETKDGG TW PRSIPSAEEEDFNYRFNSISFKGKEGWI
Sbjct: 100 DIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPRSIPSAEEEDFNYRFNSISFKGKEGWI 159
Query: 179 VGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+GKPAILL+T+DAGE+W+RIPLSSQLPGDM F + A + + G
Sbjct: 160 IGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEG 207
>gi|297808307|ref|XP_002872037.1| HCF136 [Arabidopsis lyrata subsp. lyrata]
gi|297317874|gb|EFH48296.1| HCF136 [Arabidopsis lyrata subsp. lyrata]
Length = 393
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/125 (85%), Positives = 123/125 (98%)
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
+WQPHNRAVARRIQNMGWRADGGLWLLVRGGGL+LSKGTG+TE+FEEVPVQSRGFGILDV
Sbjct: 269 YWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGLTEDFEEVPVQSRGFGILDV 328
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
GYRS++EAWAAGGSG+LL+T NGGK+W R+KAADNIAANLY+VKF+++KKGFVLGNDGVL
Sbjct: 329 GYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVL 388
Query: 330 LQYLG 334
L+Y+G
Sbjct: 389 LRYVG 393
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 105/159 (66%), Positives = 127/159 (79%), Gaps = 6/159 (3%)
Query: 68 RRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDL 127
RR+ + Q+A +SLSI + AK++E LS WERV++P+DPGVVLLDIAFVPD+
Sbjct: 45 RRELLYQSAAVSLSIVGPV------KEAKADEQLSEWERVFLPIDPGVVLLDIAFVPDEP 98
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
+ GFLLGTRQTLLETKDGG TW PRSIPSAEEEDFNYRFNSISFKGK+GWI+GKPAILL+
Sbjct: 99 SRGFLLGTRQTLLETKDGGNTWNPRSIPSAEEEDFNYRFNSISFKGKQGWIIGKPAILLY 158
Query: 188 TSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
T+DAG++W+RIPLSSQLPGDM F + A + + G
Sbjct: 159 TADAGDNWDRIPLSSQLPGDMVFIKATGDKSAEMVTDEG 197
>gi|168045659|ref|XP_001775294.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673375|gb|EDQ59899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 353
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 184/354 (51%), Gaps = 124/354 (35%)
Query: 95 AKSEEALSAWERVYIPVDPGVVLLDIAFV---PD-------------------------- 125
A ++E +S+WE+V +PVDPGVVLLD+AFV PD
Sbjct: 10 ALADETISSWEQVVLPVDPGVVLLDMAFVPDQPDRGFLLGTRQTLLETKDAGRSWSPRSI 69
Query: 126 ------DLNH-----------GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRF-- 166
D N+ G+++G LL T +GG++W E + R
Sbjct: 70 PSAEDEDFNYRFNSISFQGQEGWIIGKPAILLHTSNGGESW--------ERIPLSIRLPG 121
Query: 167 NSISFKG---KEGWIVGKPAILLHTSDAGESWE--------------------------- 196
N I+ +G +V + TS+ G +W+
Sbjct: 122 NPITIRGTGPDSAEMVTDEGAIYVTSNKGYNWKAAVEETVSATLNRTVSSGISGASYYTG 181
Query: 197 ------RIPLSSQL-------------PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLV 237
R P + PG +WQPHNR ARRIQNMGWRADGGLWL+V
Sbjct: 182 TLNTVNRSPAGDYVAVVSRGNFFLTWEPG-QPYWQPHNRTSARRIQNMGWRADGGLWLVV 240
Query: 238 RGGGLFLSKGTGI-----------------TEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
RGGGL++SKGTG+ TE+FEE + SRGFGILDVGYRS+DEAWAA
Sbjct: 241 RGGGLYVSKGTGVGISHTLGTRSKLSFLQVTEDFEEQKIPSRGFGILDVGYRSKDEAWAA 300
Query: 281 GGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
GGSG+LL+TT+GGK+WIR+K AD IAANLYSVKFI + KGFVLGNDGVLL+YLG
Sbjct: 301 GGSGILLRTTDGGKSWIRDKVADKIAANLYSVKFI-DNKGFVLGNDGVLLRYLG 353
>gi|414078848|ref|YP_006998166.1| photosystem II stability/assembly factor, HCF136 type [Anabaena sp.
90]
gi|413972264|gb|AFW96353.1| photosystem II stability/assembly factor, HCF136 type [Anabaena sp.
90]
Length = 339
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 165/322 (51%), Gaps = 81/322 (25%)
Query: 82 ISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLE 141
I + A G P+ S + W+ + +P LLDI+F ++ HG+L+G TLLE
Sbjct: 16 IVVIACIGCSSVPSISN---NPWQVINVPTKSK--LLDISFA-NNSQHGYLVGGNATLLE 69
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTS------------ 189
TKDGG TW P + E +D YRFNS+SF G+EGWI G+P++LLHT+
Sbjct: 70 TKDGGDTWQPLKL---ELDDPRYRFNSVSFSGQEGWIAGEPSLLLHTTDEGKSWSRIALS 126
Query: 190 -------------------------------DAGESW--------------ERIP----- 199
D G++W ER P
Sbjct: 127 EKLPGSPIAITAIGQNTAEMATDIGAIYQTTDGGQNWKANLDAAVGVVRTLERSPDGKYI 186
Query: 200 --------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
S+ PG A WQPHNR +RR++NMG+ DG LWLL RGG + S T
Sbjct: 187 AVSAKGSFYSTWEPGQNA-WQPHNRNSSRRLENMGFTNDGQLWLLARGGQIQFSDPTKPE 245
Query: 252 EEFE-EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLY 310
E E E P S +G+LD+ YR+ DE W GGSG LL++T+GGKTW +++ + +AANLY
Sbjct: 246 EWLEVEYPELSTSWGLLDLAYRTPDEIWIGGGSGNLLRSTDGGKTWEKDRDVETVAANLY 305
Query: 311 SVKFINEKKGFVLGNDGVLLQY 332
+ F + +GF++G+ GVLL+Y
Sbjct: 306 KIVFFSPDQGFIIGDRGVLLKY 327
>gi|255076795|ref|XP_002502066.1| predicted protein [Micromonas sp. RCC299]
gi|226517331|gb|ACO63324.1| predicted protein [Micromonas sp. RCC299]
Length = 425
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 161/337 (47%), Gaps = 103/337 (30%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQT----------------- 138
K+EE WE V +P++PGV+LLDIAFVPDD HGFLLGTRQT
Sbjct: 92 KAEEVSKFWEIVDLPLEPGVILLDIAFVPDDPKHGFLLGTRQTILETFDGGKTWDFKSIP 151
Query: 139 -----------------------------LLETKDGGKTW-------------------- 149
LL T DGG TW
Sbjct: 152 AAFDDDVNYRFNSVSFNGKEGWIVGKPAILLHTTDGGDTWERVGLSPRLPGAPVLITATG 211
Query: 150 -------------------APRSIPSAEEEDFNYRFNSISFKGKEG--WIVGKPAILLHT 188
A R+ +A EE + N G +G + G + +
Sbjct: 212 RAGQAEMVTDEGAIYLTTDAARNWKAAVEETISATLNRTVSSGVQGASYYTGTLSTIARN 271
Query: 189 SDAGESWERIPLSSQ-------LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG 241
+D + I LSS+ PG A+WQPHNR+ RR+Q+MGWR DGG+W L RGGG
Sbjct: 272 NDG----DYIGLSSRGNFYMTWSPG-QAYWQPHNRSSGRRVQSMGWRPDGGIWELTRGGG 326
Query: 242 LFLSKGTGITE---EFEEVPVQSRGFGILDVGYRSQ-DEAWAAGGSGVLLKTTNGGKTWI 297
+F S G+ E +F E + SRGFG+LD+ + + W GGSG + + + GK+W
Sbjct: 327 IFFSNTDGLPENDDDFSEGKIGSRGFGLLDLTAKPNGKQFWIVGGSGSVFYSNDAGKSWK 386
Query: 298 REKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
R++ DN+A NLY+VKF ++ GF+LGNDG+LL+Y+G
Sbjct: 387 RDRGTDNVAGNLYNVKFSSDDSGFILGNDGILLRYVG 423
>gi|428306633|ref|YP_007143458.1| Ycf48-like protein [Crinalium epipsammum PCC 9333]
gi|428248168|gb|AFZ13948.1| Ycf48-like protein [Crinalium epipsammum PCC 9333]
Length = 333
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/305 (36%), Positives = 156/305 (51%), Gaps = 80/305 (26%)
Query: 102 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED 161
S W+ + +P L DIAF D NHG+L+G+ TL+ET DGGKTW R + + +
Sbjct: 32 SPWQVINVPTQ--ATLADIAFTADS-NHGWLVGSDSTLVETTDGGKTWQVRRV---DVDS 85
Query: 162 FNYRFNSISFKGKEGWIVGKPAILLH---------------------------------- 187
NYRF S+SF G EGW+ G+PAILLH
Sbjct: 86 QNYRFTSVSFAGDEGWVTGEPAILLHTTDGGTSWSRIPLSNKLPGAPNTILALDSNSAEM 145
Query: 188 ---------TSDAGESWE--------------RIP-------------LSSQLPGDMAFW 211
TSD G +W+ R P S+ PG + W
Sbjct: 146 TTNVGAIYRTSDGGRTWQALVQDALGVVRNISRSPDGKYVAVSTKGNFYSTWEPG-LDAW 204
Query: 212 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDV 269
HNR +RR+QNMG+ DG +W+L RGG + SK I E ++EV P S +G+LD+
Sbjct: 205 VGHNRNSSRRVQNMGFTQDGRMWMLARGGQVQFSKSDDI-ESWDEVQYPEMSTSWGLLDL 263
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
YR+ DE W AGGSG LL + +GGKTW +++ +++A+N Y + F+ ++GF++G G+L
Sbjct: 264 AYRTPDEIWLAGGSGNLLCSLDGGKTWQKDREVEDVASNFYKIVFVTPEQGFIIGQRGIL 323
Query: 330 LQYLG 334
L+Y G
Sbjct: 324 LKYQG 328
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 93 QPAKSEEALSAWERVYIP-VDPGVVLLDIAF-VPDDLNHGFLLGTRQTLLETKDGGKTWA 150
Q +KS++ + +W+ V P + LLD+A+ PD++ +L G LL + DGGKTW
Sbjct: 236 QFSKSDD-IESWDEVQYPEMSTSWGLLDLAYRTPDEI---WLAGGSGNLLCSLDGGKTWQ 291
Query: 151 PRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILL 186
E ED F I F E G+I+G+ ILL
Sbjct: 292 ----KDREVEDVASNFYKIVFVTPEQGFIIGQRGILL 324
>gi|298490486|ref|YP_003720663.1| glycosyl hydrolase family protein ['Nostoc azollae' 0708]
gi|298232404|gb|ADI63540.1| glycosyl hydrolase BNR repeat-containing protein ['Nostoc azollae'
0708]
Length = 340
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 163/322 (50%), Gaps = 81/322 (25%)
Query: 82 ISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLE 141
I + A+ G + P+ S + W + +P D L DIAF D+ NHG+L+G+ TLLE
Sbjct: 16 IVVLASIGCSKVPSVS---YNPWAVINVPTD--AKLFDIAFT-DNPNHGYLVGSNATLLE 69
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH-------------- 187
T DGG TW P + E + RF+S+SF GKEGWIVG+P++LLH
Sbjct: 70 TNDGGNTWQPLQLAVDEPKS---RFDSVSFAGKEGWIVGEPSLLLHTTDEGKSWSSLPLN 126
Query: 188 -----------------------------TSDAGESW--------------ERIPLSSQL 204
T+D G++W ER P +
Sbjct: 127 EKLPGSPILITALGENTAEMATDVGAIYKTTDGGQNWKAQVEAAVGVVRNLERSPDGKYI 186
Query: 205 -------------PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
PG A W PHNR +RR++NMG+ +G LWLL RGG + S T
Sbjct: 187 AVSSKGSFYSVWEPGQAA-WDPHNRNSSRRLENMGFAGNGQLWLLARGGQVKFSDLTKSD 245
Query: 252 EEFE-EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLY 310
E + E P + +G+LD+ YR+ +E W GGSG LL++T+GG+TW +++ + +AAN Y
Sbjct: 246 EWLDVEYPELATSWGLLDLAYRTPEEIWIGGGSGNLLRSTDGGQTWEKDREVEGVAANFY 305
Query: 311 SVKFINEKKGFVLGNDGVLLQY 332
+ F N +GF++G+ G+LL+Y
Sbjct: 306 KIVFFNPDQGFIIGDHGILLKY 327
>gi|443478758|ref|ZP_21068470.1| Ycf48-like protein [Pseudanabaena biceps PCC 7429]
gi|443015908|gb|ELS30690.1| Ycf48-like protein [Pseudanabaena biceps PCC 7429]
Length = 334
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 154/300 (51%), Gaps = 77/300 (25%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W +V +PV + LD+ F +DL+HG+L+GT TLLE+ DGGKTW R + + D
Sbjct: 38 WHKVDLPV--AITPLDLWFDKNDLDHGWLVGTEATLLESIDGGKTWEERKL---DLGDSI 92
Query: 164 YRFNSISFKGKEGWIVGKPAILLH------------------------------------ 187
YRF+SISF GKEGWI G+P++LLH
Sbjct: 93 YRFSSISFSGKEGWITGQPSLLLHTTDGGKSWSRIGLSSKLPGDPFAIVAQGKNSAEMVT 152
Query: 188 -------TSDAGESWERIP---------------------------LSSQLPGDMAFWQP 213
T DAG++W+ + S+ PGD+ W
Sbjct: 153 DLGAIYSTQDAGQNWKALVTQAVGNARNLNRSADGRYVAISANGNFYSTWQPGDVT-WIQ 211
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK-GTGITEEFEEVPVQSRGFGILDVGYR 272
HNR +RR+QNMG+ D LW+L RGG + S+ G E ++ P + GFG+LD+ Y+
Sbjct: 212 HNRNSSRRVQNMGYTPDNRLWMLNRGGQVQFSEVGEFDKWEKKQTPREGGGFGLLDLAYQ 271
Query: 273 SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
++ W +GGS L+ + +GGKTW R+++A N+ ANLY V F + +GFV+G +G LL Y
Sbjct: 272 DENNVWISGGSSRLIHSEDGGKTWTRDRSAANVGANLYQVYFFSHDRGFVIGQNGTLLAY 331
>gi|428221106|ref|YP_007105276.1| putative photosystem II stability/assembly factor-like protein
[Synechococcus sp. PCC 7502]
gi|427994446|gb|AFY73141.1| putative photosystem II stability/assembly factor-like protein
[Synechococcus sp. PCC 7502]
Length = 338
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 148/300 (49%), Gaps = 77/300 (25%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W RV +P LLDIAF + + G+L+GT LLETKDGGKTW PR++ E D
Sbjct: 41 WHRVELPTK--ATLLDIAFSSTNPDSGWLVGTDGALLETKDGGKTWEPRNL---ELGDGI 95
Query: 164 YRFNSISFKGKEGWIVGKPAILLH------------------------------------ 187
YRF S+SF G EGWIVGKP++LLH
Sbjct: 96 YRFISVSFIGDEGWIVGKPSLLLHTEDGGKSWNRIGLSSKLPGDPALIKALAPQTAEMAT 155
Query: 188 -------TSDAGESWERIP---------------------------LSSQLPGDMAFWQP 213
TSD G++W+ + S+ PG+ A W
Sbjct: 156 DVGAIYRTSDRGQNWKALVTQAVGNVRNLYRADDGRYIAVSAKGNFYSTWSPGEAA-WTQ 214
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE-EFEEVPVQSRGFGILDVGYR 272
HNR +RR+Q MG+ DG +W+L RGG L SK T + E + P Q++G G LD+ Y+
Sbjct: 215 HNRNSSRRVQRMGYSPDGRIWMLNRGGQLQFSKSTTVDSWEKPQYPKQAKGIGFLDLAYQ 274
Query: 273 SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
W GG+ +LL + +GGK+W+R+++ AN YS+ F+ +G++LG DG LL Y
Sbjct: 275 DDQNVWVTGGNSILLHSEDGGKSWVRDESLKGTGANFYSILFVGSDRGYILGQDGSLLTY 334
>gi|220907638|ref|YP_002482949.1| hypothetical protein Cyan7425_2227 [Cyanothece sp. PCC 7425]
gi|219864249|gb|ACL44588.1| Ycf48-like protein [Cyanothece sp. PCC 7425]
Length = 333
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/336 (35%), Positives = 162/336 (48%), Gaps = 88/336 (26%)
Query: 70 QFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNH 129
+F+S A L L S L P WE V +P D LLDI F+ + H
Sbjct: 10 RFLSIVAVLILCGSCGFAQALGVNP---------WELVELPSD--ATLLDIGFI--NPQH 56
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH-- 187
G+L+GT TLLET DGGK+W RS+ +++ YR S+SF G+EGW+VGKP+ILLH
Sbjct: 57 GWLVGTHGTLLETLDGGKSWRERSLSLTDQD---YRLTSVSFSGQEGWVVGKPSILLHTT 113
Query: 188 -----------------------------------------TSDAGESW----------- 195
T D G+SW
Sbjct: 114 DGGQSWSKVPLSAKLPGSPNTVFALGNQKAEMTTDVGAIYRTEDGGQSWKALVQEAVGVI 173
Query: 196 ---ERIP-------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG 239
+R P S+ PG A W+PHNR +RR+QNMG+ G LW+LV G
Sbjct: 174 RNIDRSPDGQYVAVSSKGSFYSTWSPGQQA-WEPHNRNSSRRVQNMGFGQHGQLWMLVHG 232
Query: 240 GGLFLSKGTGITEEFEEV-PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G L + + + + P Q+ G+LD+ YR+ E W AGGSG LL + +GGKTW +
Sbjct: 233 GSLQFNDPAQPEQWSKPINPQQAVSVGLLDLAYRTDSELWLAGGSGNLLCSVDGGKTWKK 292
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
+ +NI +N Y + F+N ++GF+LG G LL+Y G
Sbjct: 293 DTELENIPSNFYKIVFLNPEQGFILGQQGNLLRYTG 328
>gi|411118592|ref|ZP_11390973.1| putative photosystem II stability/assembly factor-like protein
[Oscillatoriales cyanobacterium JSC-12]
gi|410712316|gb|EKQ69822.1| putative photosystem II stability/assembly factor-like protein
[Oscillatoriales cyanobacterium JSC-12]
Length = 337
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 157/304 (51%), Gaps = 78/304 (25%)
Query: 101 LSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE 160
+ W+ V +P + LLDIAFV D +HG+++G +L ET D G+TW R++ E
Sbjct: 34 FNPWQVVTVPTESN--LLDIAFVNKDSSHGWVVGANASLFETTDNGETWQERTL----EL 87
Query: 161 DFNYRFNSISFKGKEGWIVGKPAILLHT-------------------------------- 188
D YRF S+SF +EGWIVG+P+ILLHT
Sbjct: 88 DQPYRFTSVSFYEQEGWIVGQPSILLHTEDEGRSWSRIPLSEKLPGAPNTIEALGPQSAE 147
Query: 189 -----------SDAGESW--------------------ERIPLSSQ-------LPGDMAF 210
SD G++W E + +SS+ PG ++
Sbjct: 148 MTTNIGAIYRTSDGGKTWKAMVEEAVGVVRNISRSPNGEYVAVSSRGNFYSTWQPG-LSA 206
Query: 211 WQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV-PVQSRGFGILDV 269
W+PHNR +RR+QNMG+ +DG LW+L RGG + + E + + P + +G+LD+
Sbjct: 207 WEPHNRNSSRRVQNMGFTSDGRLWMLARGGQIQFTSPENSEEWTDPINPEFATSWGLLDL 266
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
YR+ DE W AGGSG LL + +GGKTW +++ +++ +N Y +KF +KGF++G G L
Sbjct: 267 AYRTPDEVWVAGGSGNLLLSRDGGKTWEKDRFVEDVPSNFYRIKFFGTEKGFIIGQQGTL 326
Query: 330 LQYL 333
L+Y+
Sbjct: 327 LKYV 330
>gi|308810543|ref|XP_003082580.1| Sortilin and related receptors (ISS) [Ostreococcus tauri]
gi|116061049|emb|CAL56437.1| Sortilin and related receptors (ISS), partial [Ostreococcus tauri]
Length = 337
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 162/330 (49%), Gaps = 107/330 (32%)
Query: 104 WERVYIPVDPGVVLLDIAFV---------------------------------PDDLNH- 129
WERV +P++PGV+LLDIAFV DD+N+
Sbjct: 12 WERVELPLEPGVILLDIAFVNEQRGFLLGTRQTILETTNGGKTWDARDLTGLLDDDVNYR 71
Query: 130 ----------GFLLGTRQTLLETKDGGKTW-----APRSIPSAEEEDFNYRFNSISFKGK 174
G+++G LL T DGGK W +PR +P A ++ G
Sbjct: 72 FNSVSFAGEEGWIIGKPAVLLHTVDGGKNWERVGLSPR-LPGAP-----LLVTAVKDNGT 125
Query: 175 EGWIVGKPAILLHTSDAGESW--------------------------------------- 195
+ + AI T DA +W
Sbjct: 126 AEMVTDEGAIYF-TKDAARNWKAAVEETVSATLNRTVSSGITGASYYTGTFSTVSRNDKG 184
Query: 196 ERIPLSSQ-------LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT 248
E + LSS+ PG A+WQPHNR ARR+Q+MGWR DGG+W L RGGG+F S+
Sbjct: 185 EYLGLSSRGNFYMTWAPG-QAYWQPHNRTSARRVQSMGWRKDGGVWELTRGGGVFQSQDI 243
Query: 249 GITEE---FEEVPVQSRGFGILDVGYRSQ-DEAWAAGGSGVLLKTTNGGKTWIREKAADN 304
G+ EE F E + SRGFG+LD+G + + WA GGSG + +T+GGK+W R++ DN
Sbjct: 244 GLPEEDSEFVEAKIGSRGFGLLDLGSDPKGNTYWAVGGSGSVFYSTDGGKSWKRDRGTDN 303
Query: 305 IAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
+AANLY+VKF +E +GF+LGNDGVLL+Y+G
Sbjct: 304 VAANLYNVKFQSETQGFILGNDGVLLRYIG 333
>gi|428218035|ref|YP_007102500.1| Ycf48-like protein [Pseudanabaena sp. PCC 7367]
gi|427989817|gb|AFY70072.1| Ycf48-like protein [Pseudanabaena sp. PCC 7367]
Length = 375
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 114/345 (33%), Positives = 164/345 (47%), Gaps = 88/345 (25%)
Query: 70 QFVSQTATLSLSISLAATTGLYEQPAKS----------EEALSAWERVYIPVDPGVVLLD 119
Q Q A +L + + TT + P + ++ L W +V +P D V LLD
Sbjct: 31 QRCCQAAIATLFVMITCTTAIVSHPQMAIAQDQRDQQNQQDLEYWHQVELPTD--VTLLD 88
Query: 120 IAFVPDD-LNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWI 178
+ F + + HG+L+GT TLLET DGG+TW P+ + + NYRF S+SF G EGWI
Sbjct: 89 LDFTDNQKVQHGWLVGTNSTLLETTDGGETWQPKKLDLGK---INYRFVSVSFNGDEGWI 145
Query: 179 VGKPAILLHTSDAGESWERIPLSSQLPGDMAF---------------------------W 211
VG+P++LLHT D G+SW+RI LSS+LPGD A W
Sbjct: 146 VGRPSLLLHTEDGGKSWQRIGLSSRLPGDPAMVTALGPKTLEMATDIGAIYRSEDGARTW 205
Query: 212 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLF---------------------------- 243
Q R +N+ +R+D G ++ V G F
Sbjct: 206 QALVREAVGTTRNL-FRSDDGRYIAVSAKGNFYSTWAPGDRAWTPHNRNNSRRVQNMGYT 264
Query: 244 -------LSKG-------TGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLL 287
L++G + TE +EE P + G+G+LD+ ++ + W +GGS LL
Sbjct: 265 PDGRIWMLNRGGVLQFSESSNTENWEEPQNPKAASGYGMLDMSFQDANNVWVSGGSSRLL 324
Query: 288 KTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+ +GG+TW RE+ N+ AN Y V F N +GF+LG G LL Y
Sbjct: 325 HSEDGGQTWHREEYLSNVGANFYRVFFFNHDRGFILGQFGTLLTY 369
>gi|145353232|ref|XP_001420924.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581160|gb|ABO99217.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 363
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 125/370 (33%), Positives = 176/370 (47%), Gaps = 115/370 (31%)
Query: 68 RRQFVSQTATLSLSISLAATTGLYEQPAKSEEAL--SAWERVYIPVDPGVVLLDIAF--- 122
RR +TATL ++S ++ A +E ++ S WE+V +P++PGV+LLDIAF
Sbjct: 3 RRALAVKTATLVAALSALPM----DKRALAEGSIESSYWEQVELPLEPGVILLDIAFSSN 58
Query: 123 --------------------------------VPDDLNH-----------GFLLGTRQTL 139
+ DD+N+ G+++G L
Sbjct: 59 DPKHGFLLGTRQTVLETKDGGKTWDVRDLSGLLDDDVNYRFNSVSFCGDEGWIIGKPAVL 118
Query: 140 LETKDGGKTW-----APRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGES 194
L T DGG W +PR +P A ++ G + + AI T DA +
Sbjct: 119 LHTTDGGANWERVGLSPR-LPGAP-----VLITAVQDNGTAEMVTDEGAIYF-TKDAARN 171
Query: 195 W---------------------------------------ERIPLSSQ-------LPGDM 208
W E + LSS+ PG
Sbjct: 172 WKAAVEETVSATLNRTVSSGITGASYYTGTFSTISRNDNGEYLGLSSRGNFYMSWAPG-Q 230
Query: 209 AFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEE---FEEVPVQSRGFG 265
A+WQPHNR ARR+Q+MGWR DGG+W L RGGG+F S TG+ EE F E + SRGFG
Sbjct: 231 AYWQPHNRTSARRVQSMGWRPDGGIWELTRGGGIFFSAETGLPEEDSEFNEGRIGSRGFG 290
Query: 266 ILDVGYR-SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
+LD+GY S W GGSG + +T+ GK+W R++ DN+AANLY+VKF +E +GF+LG
Sbjct: 291 LLDLGYTPSGKTFWTVGGSGSVFYSTDAGKSWKRDRGTDNVAANLYNVKFQSEDQGFILG 350
Query: 325 NDGVLLQYLG 334
NDG+LL++ G
Sbjct: 351 NDGILLRFTG 360
>gi|440681581|ref|YP_007156376.1| Ycf48-like protein [Anabaena cylindrica PCC 7122]
gi|428678700|gb|AFZ57466.1| Ycf48-like protein [Anabaena cylindrica PCC 7122]
Length = 332
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 159/318 (50%), Gaps = 81/318 (25%)
Query: 86 ATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDG 145
A G + P+ S + W+ + +P + LLDI F + HG+L+G+ TLLET +G
Sbjct: 20 ACIGCSKVPSISN---NPWQVINVPTE--AKLLDIGFTGNP-QHGYLVGSSATLLETNNG 73
Query: 146 GKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH------------------ 187
G TW P + E +D YRFNS+SF G EGWI G+P++LLH
Sbjct: 74 GDTWQPLKL---ELDDERYRFNSVSFSGNEGWIAGEPSLLLHTTDEGKSWSRIPLTEKLP 130
Query: 188 -------------------------TSDAGESW--------------ERIPLSSQL---- 204
T+D G++W ER P +
Sbjct: 131 GSPITIAALAENTAEMATDVGAIYQTTDGGKNWKAQVEAAVGVVRNLERSPDGKYIAVSA 190
Query: 205 ---------PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFE 255
PG A W+PHNR +RR++NMG+ +G LWLL RGG + S T E +
Sbjct: 191 KGSFYSVWEPGQAA-WEPHNRLSSRRVENMGFADNGQLWLLARGGQVQFSDLTKPDEWLD 249
Query: 256 -EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKF 314
+ P + +G+LD+ YR+ E W GGSG LL++T+ GKTW +++ + +A NLY + F
Sbjct: 250 VQYPELTTSWGLLDLAYRTPTEIWIGGGSGNLLRSTDSGKTWEKDREVEGVAGNLYKIVF 309
Query: 315 INEKKGFVLGNDGVLLQY 332
N ++GFV+G+ GVLL+Y
Sbjct: 310 FNPEQGFVIGDHGVLLKY 327
>gi|434406165|ref|YP_007149050.1| putative photosystem II stability/assembly factor-like protein
[Cylindrospermum stagnale PCC 7417]
gi|428260420|gb|AFZ26370.1| putative photosystem II stability/assembly factor-like protein
[Cylindrospermum stagnale PCC 7417]
Length = 340
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 163/326 (50%), Gaps = 81/326 (24%)
Query: 78 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+L I + A G + P+ S + W+ V +P + LLDIAF D+ HG+L+G+
Sbjct: 12 FALLIVVLACIGCSKVPSISS---NPWQVVNVPTE--AKLLDIAFT-DNPQHGYLVGSNA 65
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV------------------ 179
TLLET DGG TW P ++ E +D YRF+S+SF GKEGWI
Sbjct: 66 TLLETNDGGDTWKPLNL---ELDDARYRFDSVSFAGKEGWIAGEPSLLLHTTDEGRNWSR 122
Query: 180 --------GKPAIL-----------------LHTSDAGESW--------------ERIP- 199
G P ++ T+D G++W ER
Sbjct: 123 IALSEKLPGNPIVIKALAENTAEMATDVGAIYQTTDGGKNWKAQVEAAVGVVRNLERSAD 182
Query: 200 ------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG 247
S+ PG A W PHNR ++R++NMG+ +G LWLL RGG + S
Sbjct: 183 GKYVAVSAKGSFYSTWEPGQNA-WVPHNRLSSKRLENMGFADNGQLWLLARGGQVQFSDT 241
Query: 248 TGITEEFE-EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
T E E + P S +G+LD+ YR+ DE W GGSG LL++T+GGKTW +++ + +A
Sbjct: 242 TKPDEWLEAKYPELSTSWGLLDLAYRTPDEIWIGGGSGNLLRSTDGGKTWEKDREVEEVA 301
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQY 332
AN Y V F+ +GF++G+ GVLL+Y
Sbjct: 302 ANFYKVIFLKPDQGFIIGDRGVLLKY 327
>gi|428206976|ref|YP_007091329.1| Ycf48-like protein [Chroococcidiopsis thermalis PCC 7203]
gi|428008897|gb|AFY87460.1| Ycf48-like protein [Chroococcidiopsis thermalis PCC 7203]
Length = 334
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 158/307 (51%), Gaps = 80/307 (26%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
+ + WE V +P D V L D+ F DD HG+L+G + L ETKDGGKTW +S+
Sbjct: 31 SYNPWEVVTLPTD--VNLQDVGFT-DDTQHGWLVGNKSALFETKDGGKTWQQKSLDLG-- 85
Query: 160 EDFNYRFNSISFKGKEGWIVGKPAI----------------------------------- 184
D N+ +S+SF G+EGWIVG+P++
Sbjct: 86 -DKNFILSSVSFSGQEGWIVGEPSLLLHTNDGGETWSRILLSEKLPGNPNTIVALGQQSA 144
Query: 185 --------LLHTSDAGESWERIP---------------------------LSSQLPGDMA 209
+ T+D G++W+ + S+ PG A
Sbjct: 145 EMTTDVGAIYRTTDGGKNWKAMVQEAVGVLRNVARSEDGKYIAVSAKGNFYSTWEPGQTA 204
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGIL 267
WQ HNR +RR+QNMG+ DG +W+L RGG + +K TEE+EEV P S +G+L
Sbjct: 205 -WQGHNRNSSRRLQNMGFGKDGRVWMLARGGQVQFTKADN-TEEWEEVQNPELSTSWGLL 262
Query: 268 DVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDG 327
D+ YR+ +E W GGSG LL + +GGKTW +++ +++ +NLY + F++ +KGF++G G
Sbjct: 263 DLAYRTPEEIWVTGGSGNLLCSPDGGKTWQKDRGVESVPSNLYKIVFLSPEKGFIIGQRG 322
Query: 328 VLLQYLG 334
+LL+Y G
Sbjct: 323 ILLRYQG 329
>gi|434388879|ref|YP_007099490.1| putative photosystem II stability/assembly factor-like protein
[Chamaesiphon minutus PCC 6605]
gi|428019869|gb|AFY95963.1| putative photosystem II stability/assembly factor-like protein
[Chamaesiphon minutus PCC 6605]
Length = 332
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/338 (32%), Positives = 166/338 (49%), Gaps = 85/338 (25%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
++ + Q ATL L+I + + + QP S W+ + +P + + D+ F +
Sbjct: 5 KKILRQAATL-LAIGILCVSCSHIQPLTD----SPWKPIQLPTESNI--QDLTFTSNP-Q 56
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH- 187
HG+++G+ +LET DGGKTW R + E + YRF SISF G EGWIVG+PAILLH
Sbjct: 57 HGWVVGSDAAILETNDGGKTWENRKL---ELDSSKYRFTSISFAGDEGWIVGEPAILLHT 113
Query: 188 ------------------------------------------TSDAGESWE--------- 196
T DAG++W+
Sbjct: 114 KDAGKSWERIALSSKLPGIPATIKAIGENSAEMTTDIGAIYATQDAGKNWKSLVSGAVGV 173
Query: 197 -----RIP-------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
R P S+ PG + W+PHNR +RR+ NMG+ D LW+L R
Sbjct: 174 FRTINRSPEGKYVAVSAKGNFYSTWAPGQES-WEPHNRNSSRRVSNMGFADDDRLWMLAR 232
Query: 239 GGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
GG L S G T+++EE P Q G+LD+ YR+ E W +GGSG LL +T+ GKTW
Sbjct: 233 GGQLQFSS-PGATDKWEEEVFPAQKTNIGLLDLAYRTPGEVWVSGGSGDLLVSTDSGKTW 291
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
+++ + + +NLY + F + +GF++G G++L+Y G
Sbjct: 292 LKDSNVEQVPSNLYKILFFSPDRGFIIGQRGIILKYQG 329
>gi|354569065|ref|ZP_08988224.1| Ycf48-like protein [Fischerella sp. JSC-11]
gi|353539069|gb|EHC08565.1| Ycf48-like protein [Fischerella sp. JSC-11]
Length = 336
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 155/300 (51%), Gaps = 78/300 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
WE I VD LLDIAF + HGFL+G+ TLLETKDGG+TW P + E++
Sbjct: 31 WE--VISVDTDAKLLDIAFTGNP-QHGFLVGSNATLLETKDGGETWQPIKLQLDEDK--- 84
Query: 164 YRFNSISFKGKEGWIVGKPAI--------------------------------------- 184
YRFNS+SFKG+EGWIVG+PA+
Sbjct: 85 YRFNSVSFKGQEGWIVGEPALLLHSTDEGKSWLRIPLSEKLPGNPISIIAQGANSAEMAT 144
Query: 185 ----LLHTSDAGESW-----ERIPLSSQL----------------------PGDMAFWQP 213
+ T+D G++W E + + L PG A W P
Sbjct: 145 DVGAIYKTTDGGQNWKAQVEEAVGVVRNLERSADGKYVAVSAKGNFYSTWEPGQNA-WVP 203
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFE-EVPVQSRGFGILDVGYR 272
HNR +RR++NMG+ +G LW+L RGG + S+ + E + P + +G+LD+ YR
Sbjct: 204 HNRNSSRRVENMGFDENGRLWMLARGGQIQFSETADGEKWLEPQNPELATSWGLLDMAYR 263
Query: 273 SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+ DE W +GGSG LL++++GGKTW +++ + I AN Y + F + ++GFV+G+ G LL+Y
Sbjct: 264 TPDEIWVSGGSGNLLRSSDGGKTWEKDRDVEGIPANFYKIVFFSPEQGFVIGDRGYLLKY 323
>gi|428308444|ref|YP_007119421.1| photosystem II stability/assembly factor-like protein [Microcoleus
sp. PCC 7113]
gi|428250056|gb|AFZ16015.1| putative photosystem II stability/assembly factor-like protein
[Microcoleus sp. PCC 7113]
Length = 340
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 146/295 (49%), Gaps = 76/295 (25%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
+P L D+ F DLNHG+ +G+ TLLETKDGGKTW + + E NYRF S
Sbjct: 44 VPTSTEATLQDVGFT-GDLNHGWAVGSNATLLETKDGGKTWQEKGLELGET---NYRFTS 99
Query: 169 ISFKGKEGWIVGKPAILLH----------------------------------------- 187
+SF G EGWIVG+P+ILLH
Sbjct: 100 VSFAGDEGWIVGEPSILLHTTDSGASWSRIPLSEKLPGSPNTILALGPKSAEMTTTVGAI 159
Query: 188 --TSDAGESWERIP---------------------------LSSQLPGDMAFWQPHNRAV 218
T D+G++W+ + S+ PG A W HNR
Sbjct: 160 YQTKDSGQTWKAMVEEAVGVVRNISRSEDGKYIAVSARGNFFSTWEPGQNA-WVQHNRNS 218
Query: 219 ARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI-TEEFEEVPVQSRGFGILDVGYRSQDEA 277
+RR+Q+MG+ DG LWLL RGG + S+ T + + P S +G LD+ YR+ +E
Sbjct: 219 SRRLQSMGYGKDGRLWLLARGGQVQFSRPEDPETWDESQNPEFSTSWGFLDLAYRTPEEI 278
Query: 278 WAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
W AGGSG LL + +GGKTW +++ +N+ AN Y + F+ ++GF++G GVLL+Y
Sbjct: 279 WVAGGSGNLLCSFDGGKTWQKDREIENVPANFYKIVFVTAEQGFIIGQKGVLLRY 333
>gi|119511861|ref|ZP_01630961.1| Glycosyl hydrolase, BNR repeat [Nodularia spumigena CCY9414]
gi|119463503|gb|EAW44440.1| Glycosyl hydrolase, BNR repeat [Nodularia spumigena CCY9414]
Length = 339
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 153/301 (50%), Gaps = 80/301 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W + +P D LLDIAF D+ HGFL+G TLLET DGG TW P ++ E +D
Sbjct: 34 WAIISVPTDSK--LLDIAFT-DNSQHGFLVGGDATLLETNDGGDTWKPLTL---ELDDPK 87
Query: 164 YRFNSISFKGKEGWIVGKPAI--------------------------------------- 184
RF+S+SF GKEGWI+G+P++
Sbjct: 88 SRFDSVSFAGKEGWILGEPSLLLHTTDEGSSWSRIALSEKLPGSPIAIYALGENTAEMAT 147
Query: 185 ----LLHTSDAGESW--------------ERIP-------------LSSQLPGDMAFWQP 213
+ T D G +W ER P S+ PG + W+P
Sbjct: 148 DVGAIYRTQDGGINWKAQVEGAVGVVRNIERSPDGKYVAVSAKGSFYSTWEPGQTS-WEP 206
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGY 271
HNR +RR++NMG+ +G LWLL RGG + S+ EE++E P + +G+LD+ Y
Sbjct: 207 HNRNNSRRLENMGFAENGQLWLLARGGQVQFSEPNN-PEEWQEAQNPELATSWGLLDLAY 265
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
R+ DE W GGSG LL + +GG+TW +++ + +AANLY V F N +GFV+G+ GVLL+
Sbjct: 266 RTPDELWIGGGSGNLLSSADGGQTWEKDRDVEGVAANLYKVVFFNSDQGFVIGDRGVLLK 325
Query: 332 Y 332
Y
Sbjct: 326 Y 326
>gi|22299238|ref|NP_682485.1| hypothetical protein tll1695 [Thermosynechococcus elongatus BP-1]
gi|81742811|sp|Q8DI95.1|YC48L_THEEB RecName: Full=Ycf48-like protein; Flags: Precursor
gi|22295420|dbj|BAC09247.1| photosystem II stability/assembly factor [Thermosynechococcus
elongatus BP-1]
Length = 347
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 160/314 (50%), Gaps = 83/314 (26%)
Query: 94 PAKSEEAL--SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP 151
PA + AL + WE + +P +LD++F+ D +HG+L+G TL+ET+DGG+TW P
Sbjct: 35 PALAIPALDYNPWEAIQLPTT--ATILDMSFI--DRHHGWLVGVNATLMETRDGGQTWEP 90
Query: 152 RSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH------------------------ 187
R++ + YRFNS+SF+G EGWIVG+P I+LH
Sbjct: 91 RTLVLDHSD---YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLI 147
Query: 188 -------------------TSDAGESW--------------------ERIPLSSQ----- 203
T D+G++W E + +SS+
Sbjct: 148 KALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS 207
Query: 204 --LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV--PV 259
PG A W+PHNR +RR+ NMG+ DG LW++V GG + S +E + E+ P+
Sbjct: 208 TWEPGQTA-WEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPL 265
Query: 260 QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKK 319
+ G LD+ YR+ +E W AGG+G LL + +GG+TW ++ + +N Y + F + +
Sbjct: 266 RRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ 325
Query: 320 GFVLGNDGVLLQYL 333
GF+LG G+LL+Y+
Sbjct: 326 GFILGQKGILLRYV 339
>gi|443316545|ref|ZP_21045985.1| putative photosystem II stability/assembly factor-like protein
[Leptolyngbya sp. PCC 6406]
gi|442783848|gb|ELR93748.1| putative photosystem II stability/assembly factor-like protein
[Leptolyngbya sp. PCC 6406]
Length = 344
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 155/303 (51%), Gaps = 80/303 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
WE + + + DIAF D +HG+L+G+R TLLET DGGKTW PRS+ ++
Sbjct: 46 WEVISLETE--ATFSDIAFTADP-SHGWLVGSRTTLLETTDGGKTWEPRSLNLGDQR--- 99
Query: 164 YRFNSISFKGKEGWIVGKPAILLH------------------------------------ 187
Y F S+SF +EGW+ G+P+ILLH
Sbjct: 100 YTFTSVSFADQEGWVAGQPSILLHTRDGGGSWEKVPLSEKLPGTPFMVTALKANEVELAT 159
Query: 188 -------TSDAGESWERIPL---------------------------SSQLPGDMAFWQP 213
T D G++W+ + L S+ PG++ W+P
Sbjct: 160 DVGAIYRTKDGGKNWKALVLGAVGVVRNMTRSEDGSYVAVSSRGNFYSTWTPGELD-WEP 218
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGY 271
HNR +RR+QN+G+ GGLWL+ RGG L S TG + +++ P + +G+LD+GY
Sbjct: 219 HNRQNSRRLQNIGFDKSGGLWLIARGGQLQFSP-TGSEDGWQDPLNPELASSWGLLDMGY 277
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
R+ DE W +GGSG LL + +GGKTW ++K + +N Y + F++ ++GF+LG G LL+
Sbjct: 278 RTPDEIWVSGGSGNLLNSQDGGKTWYKDKELSAVPSNFYRILFMSPEQGFILGQRGYLLR 337
Query: 332 YLG 334
Y G
Sbjct: 338 YEG 340
>gi|328877072|pdb|2XBG|A Chain A, Crystal Structure Of Ycf48 From Thermosynechococcus
Elongatus
Length = 327
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 156/304 (51%), Gaps = 81/304 (26%)
Query: 102 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED 161
+ WE + +P +LD++F+ D +HG+L+G TL+ET+DGG+TW PR++ +
Sbjct: 25 NPWEAIQLPTT--ATILDMSFI--DRHHGWLVGVNATLMETRDGGQTWEPRTL---VLDH 77
Query: 162 FNYRFNSISFKGKEGWIVGKPAILLH---------------------------------- 187
+YRFNS+SF+G EGWIVG+P I+LH
Sbjct: 78 SDYRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEM 137
Query: 188 ---------TSDAGESW--------------------ERIPLSSQ-------LPGDMAFW 211
T D+G++W E + +SS+ PG A W
Sbjct: 138 ITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA-W 196
Query: 212 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDV 269
+PHNR +RR+ NMG+ DG LW++V GG + S +E + E+ P++ G LD+
Sbjct: 197 EPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDL 255
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
YR+ +E W AGG+G LL + +GG+TW ++ + +N Y + F + +GF+LG G+L
Sbjct: 256 AYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGIL 315
Query: 330 LQYL 333
L+Y+
Sbjct: 316 LRYV 319
>gi|427712485|ref|YP_007061109.1| putative photosystem II stability/assembly factor-like protein
[Synechococcus sp. PCC 6312]
gi|427376614|gb|AFY60566.1| putative photosystem II stability/assembly factor-like protein
[Synechococcus sp. PCC 6312]
Length = 341
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 154/303 (50%), Gaps = 79/303 (26%)
Query: 101 LSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE 160
+ WE + +P V LD++F+ + HG+L+G+ L+ET DGG+TW PRS+ + + E
Sbjct: 32 FNPWEVLQLPTKSTV--LDLSFI--NSKHGWLVGSNALLMETLDGGRTWEPRSL-ALDTE 86
Query: 161 DFNYRFNSISFKGKEGWIVGKPAILL---------------------------------- 186
D YRF S+SF G EGWI G+P++LL
Sbjct: 87 D--YRFASVSFSGSEGWITGQPSVLLHTTDGGQSWERLALSAKLPGAPNTIFALGNGNAE 144
Query: 187 ---------HTSDAGESWE--------------RIP-------------LSSQLPGDMAF 210
T D G++W+ R P S+ PG A
Sbjct: 145 LTTDIGAIYQTQDQGKTWQALVQEAVGVVRNISRSPEGQYVAVSSRGSFYSTWSPGQPA- 203
Query: 211 WQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV-PVQSRGFGILDV 269
W+PHNR +RR+QNMG+ DG LW+L+ GG L S+G + P + G+LD+
Sbjct: 204 WEPHNRTSSRRVQNMGFGQDGQLWMLINGGNLSFSEGRDWESWTKPTNPQVAVSVGLLDL 263
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
YR+ +E W AGGSG LL +T+GGKTW +++ + +A+NLY V+F +GF+LG G+L
Sbjct: 264 AYRTSEEIWLAGGSGNLLCSTDGGKTWKKDRDINEVASNLYKVRFFGPNQGFILGQQGIL 323
Query: 330 LQY 332
L+Y
Sbjct: 324 LRY 326
>gi|443327415|ref|ZP_21056040.1| putative photosystem II stability/assembly factor-like protein
[Xenococcus sp. PCC 7305]
gi|442792943|gb|ELS02405.1| putative photosystem II stability/assembly factor-like protein
[Xenococcus sp. PCC 7305]
Length = 334
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 151/301 (50%), Gaps = 80/301 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ + +P + + DIAF DD NHG+L+GT+ +L ET DGG +W+ + I E+
Sbjct: 35 WKILTLPTE--AIFADIAFT-DDPNHGWLVGTKASLFETTDGGDSWSEKVIDFGTEK--- 88
Query: 164 YRFNSISFKGKEGWIVGKPAILLH------------------------------------ 187
F+ +SF G EGWIVGKP+ILLH
Sbjct: 89 ISFSGVSFSGDEGWIVGKPSILLHTNDAGANWSRIALSSKLPGSPDGIIALAANSAEMVT 148
Query: 188 -------TSDAGESWERIP---------------------------LSSQLPGDMAFWQP 213
T+D GE+W+ + S+ PG W P
Sbjct: 149 DLGAIYKTTDGGENWKALVEGAVGVARNIERSADGRYVAVSANGNFYSTWKPGQTE-WTP 207
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGY 271
HNR +RR+QNMG+ DG LWLL RGG + S TG E+ E P S +G+LD+GY
Sbjct: 208 HNRNSSRRLQNMGFSLDGDLWLLARGGVVQFSH-TGEEGEWSEAIYPEFSASWGLLDIGY 266
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+ DE W AGGSG LL + +GG+TW +++ ++ +NLY V F + ++GFVLG GVLL+
Sbjct: 267 PTSDEVWVAGGSGELLYSPDGGETWQKDREVEDAPSNLYKVIFQSPEQGFVLGERGVLLK 326
Query: 332 Y 332
Y
Sbjct: 327 Y 327
>gi|113477005|ref|YP_723066.1| Ycf48-like protein [Trichodesmium erythraeum IMS101]
gi|110168053|gb|ABG52593.1| glycosyl hydrolase, BNR repeat [Trichodesmium erythraeum IMS101]
Length = 337
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 149/300 (49%), Gaps = 79/300 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
WE V +P + L DI F D+L HG+++G+ TLLET DGG+TW P++I E+
Sbjct: 37 WEVVKLPTE--ATLFDIEFT-DNLEHGWVVGSDATLLETSDGGETWQPKTIELEEKA--- 90
Query: 164 YRFNSISFKGKEGWIVGKPAI--------------------------------------- 184
R S SF GKEGWIVG+P+I
Sbjct: 91 -RLTSASFYGKEGWIVGQPSILLHTDDEGRSWNRIALSAKLPGAPNTITALGLNSAEMTT 149
Query: 185 ----LLHTSDAGESWE--------------RIP-------------LSSQLPGDMAFWQP 213
+ T D G++W R P S+ PG + W P
Sbjct: 150 DVGAIYRTEDGGQNWHAQVEDAVGVVRNISRSPDGKYIAVSAKGNFYSTWEPGQKS-WVP 208
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV-PVQSRGFGILDVGYR 272
HNR +RR++NMG+ DG LWLL RGG L S E E + P + +G+LD+ YR
Sbjct: 209 HNRQNSRRLENMGFTDDGRLWLLARGGQLRFSDQENPQEWGEAINPEYATSWGLLDLAYR 268
Query: 273 SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+ DE W +GGSG LL++T+GG+TW +++ +N+ N Y++ F+N + GF+LG G +L+Y
Sbjct: 269 TPDEIWVSGGSGNLLRSTDGGETWEKDREVENVPENFYNIVFMNSETGFILGQRGSMLKY 328
>gi|303276346|ref|XP_003057467.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461819|gb|EEH59112.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 340
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 93/113 (82%)
Query: 94 PAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS 153
PA++EE WE+V +P++PG++LLDIAF D NHGFLLGTRQT+LET DGGKTW ++
Sbjct: 5 PARAEEVSKFWEQVDLPLEPGIILLDIAFEEGDPNHGFLLGTRQTILETFDGGKTWDFKA 64
Query: 154 IPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
I +A +ED NYRFNSI+FKGKEGWIVGKPAILLHT D G +WERI LS +LPG
Sbjct: 65 ITAAFDEDVNYRFNSITFKGKEGWIVGKPAILLHTIDGGANWERIGLSPRLPG 117
>gi|119491038|ref|ZP_01623196.1| hypothetical protein L8106_26012 [Lyngbya sp. PCC 8106]
gi|119453583|gb|EAW34743.1| hypothetical protein L8106_26012 [Lyngbya sp. PCC 8106]
Length = 336
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 150/302 (49%), Gaps = 77/302 (25%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
WE IP+ L D+AF D NHG+++G+ TLLET D GK+W +++ EE+
Sbjct: 34 WE--LIPIATDANLFDVAFSEQDPNHGWVVGSNSTLLETTDSGKSWETKALDLGEEK--- 88
Query: 164 YRFNSISFKGKEGWIVGKPAILLH------------------------------------ 187
R S+SF EGW+VG+P++LLH
Sbjct: 89 VRLASVSFSDSEGWVVGEPSVLLHTTDNGNSWTRIQLSSKLPGAPYKIVALGPRSAEMTT 148
Query: 188 -------TSDAGESW--------------------ERIPLSSQ-------LPGDMAFWQP 213
T D GE W E + +S++ PG A W+P
Sbjct: 149 DIGAIYRTEDGGEHWKALVEEAVGVVRNVARSSEGEYMTVSAKGNFYSMWTPGSTA-WEP 207
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV-PVQSRGFGILDVGYR 272
HNR ++R++NMG+ DG LW++ RGG L + E E + P + +G+LD+ YR
Sbjct: 208 HNRYSSKRLENMGFGEDGRLWMIARGGELRFTDPENPEEWGEAIQPEYTTSWGLLDLAYR 267
Query: 273 SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+ E W +GGSG L+ + +GG+TW++++ ++I +N +KFIN +KGF+LG G LL+Y
Sbjct: 268 TSSEIWISGGSGNLVCSLDGGETWLKDREVEDIPSNFNRIKFINPEKGFILGQRGTLLRY 327
Query: 333 LG 334
G
Sbjct: 328 TG 329
>gi|412987552|emb|CCO20387.1| Ycf48-like protein [Bathycoccus prasinos]
Length = 405
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 120/399 (30%), Positives = 183/399 (45%), Gaps = 105/399 (26%)
Query: 37 RFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAK 96
+ I S A + +++ S S +++ L +R+F +T + A+++ + A
Sbjct: 9 KTIIRSAAKNDDANEISFSEKDDEHTTNKLTKREFGMKTFAFTSLSLFASSSSSQTKEAF 68
Query: 97 SEEALSA--WERVYIPVDPGVVLLDIAFVPDDLNHGF----------------------- 131
++++L++ WE+V +P++PGV+LLDIAF ++ HGF
Sbjct: 69 ADDSLNSNFWEKVNLPLEPGVILLDIAFTDENARHGFLLGTRQTILETFDGGKTWDAKDL 128
Query: 132 ------------------------LLGTRQTLLETKDGGKTW------------------ 149
++G LL T D GKTW
Sbjct: 129 GQDVIDDEVNYRFNSVSFNGDEGWIVGKPAILLHTVDAGKTWERVGLSPRLPGIPVLITA 188
Query: 150 ---------------------APRSIPSAEEEDFNYRFNSISFKGKEG--WIVGKPAILL 186
A R+ +A EE + N G +G + G + +
Sbjct: 189 TGDNGVAEMVTDQGAIYLTTDAARNWKAAVEETVDATLNRTVSSGVQGASYYTGSFSTVS 248
Query: 187 HTSDAGESWERIPLSSQ-------LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG 239
+ GE I LSS+ PG A+WQPHNR+ ARRIQ+MGWR DGG+W L RG
Sbjct: 249 RNPETGE---YIGLSSRGNFYMSWAPG-QAYWQPHNRSSARRIQSMGWRKDGGVWQLTRG 304
Query: 240 GGLFLSKGTGITE---EFEEVPVQSRGFGILDVGYR-SQDEAWAAGGSGVLLKTTNGGKT 295
GG++LS + E EF E + SRG+G+LD+G S + + GGSG + + + GKT
Sbjct: 305 GGIYLSDTKALPEEDDEFTEGKIGSRGYGLLDLGSNASGTKYFTVGGSGSVFSSEDKGKT 364
Query: 296 WIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
W R++ D +A NLY V F + GF+LGNDG+LL+Y G
Sbjct: 365 WKRDRGTDEVAGNLYKVAFAKDDVGFILGNDGILLRYRG 403
>gi|307103931|gb|EFN52188.1| hypothetical protein CHLNCDRAFT_37063 [Chlorella variabilis]
Length = 449
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Query: 94 PAKSEEALSA-WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
PA + LSA WE V +P++ V+LLD+AF + NHGFLLG+RQTLLET DGGKTW PR
Sbjct: 75 PAHANRPLSAEWEVVDLPIEKDVLLLDVAFTGTEPNHGFLLGSRQTLLETFDGGKTWEPR 134
Query: 153 SIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
++ +A +E FN+RFNSISF G EGWIVGKPAILLHT+D G+SWER+PLS++LPG
Sbjct: 135 TVAAARDEGFNFRFNSISFNGDEGWIVGKPAILLHTTDGGKSWERVPLSAKLPG 188
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
+W+PHNR RR+QNMG+ D +WL +GG ++ G+G F + + SRGFGILD+
Sbjct: 284 YWRPHNRPSTRRLQNMGFTPDAKIWLTTKGGDVYYVDGSG-EGAFGQAKIASRGFGILDI 342
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ +A GGSG L KT +GG++W RE+AAD++AANLY + F GFVLGNDGVL
Sbjct: 343 KFVDGKIGYACGGSGSLFKTEDGGQSWKRERAADSLAANLYELVFTPGGLGFVLGNDGVL 402
Query: 330 LQYLG 334
L+ G
Sbjct: 403 LRVSG 407
>gi|254417166|ref|ZP_05030911.1| BNR/Asp-box repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196175972|gb|EDX70991.1| BNR/Asp-box repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 336
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 165/340 (48%), Gaps = 90/340 (26%)
Query: 65 SLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVP 124
+L R V A L +S Y +P + + WE V +P L DI F
Sbjct: 7 TLKRILIVFAIACLCISCK-------YAEPL----SYNPWELVSLPTQE--TLRDIGFT- 52
Query: 125 DDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI 184
++ +HG+L+G+ TLLET DGG+TW + + +E YRF S+SF EGWIVG+P+I
Sbjct: 53 NNPSHGWLVGSNSTLLETTDGGETWQEKVLDVGDEN--KYRFTSVSFADDEGWIVGEPSI 110
Query: 185 LL-------------------------------------------HTSDAGESW-----E 196
LL HT D G++W E
Sbjct: 111 LLHTTDGGVSWVRIPLSEKLPGDPNTILALGPKSAEMTTTIGAIYHTQDGGKTWKAQVEE 170
Query: 197 RIPL----------------------SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
+ + S+ PG A W+ H R+ ++R+QNMG+ DG LW
Sbjct: 171 AVGVLRNISRSNDGKYVAVSARGNFYSTWEPGQSA-WEQHERSSSKRLQNMGFTEDGRLW 229
Query: 235 LLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
L RGG L S G+ E +EE P S +G+LD+ YR+ DE W AGGSG LL + +G
Sbjct: 230 GLARGGMLQFS-GSEDLEAWEEPIYPEFSTSWGLLDLAYRTPDEVWLAGGSGNLLCSFDG 288
Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
GKTW++++ +++ +N Y V FI ++GFV+G GVLL+Y
Sbjct: 289 GKTWLKDREVEDVPSNFYKVVFITPEQGFVIGQAGVLLKY 328
>gi|443320499|ref|ZP_21049595.1| putative photosystem II stability/assembly factor-like protein
[Gloeocapsa sp. PCC 73106]
gi|442789781|gb|ELR99418.1| putative photosystem II stability/assembly factor-like protein
[Gloeocapsa sp. PCC 73106]
Length = 330
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 150/301 (49%), Gaps = 80/301 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ + +P + D+AF DD HG+L+GT+ TL ETKD G+TW P I EE+
Sbjct: 31 WKMIQLPTE--ATFADVAFT-DDPKHGWLVGTKATLFETKDAGETWTPVVIDFGEEK--- 84
Query: 164 YRFNSISFKGKEGWIVGKPAI--------------------------------------- 184
F ISF +EGWI G P +
Sbjct: 85 ISFTGISFYQQEGWITGDPLVLLHTTNGGKTWERVRLSAKLPGAPYGIIALGPKSAEMVT 144
Query: 185 ----LLHTSDAGESWE--------------RIP-------------LSSQLPGDMAFWQP 213
+ T D G++W+ R P S+ PG A W P
Sbjct: 145 KLGAIYKTVDGGQNWKALVEGSVGVARTLNRSPNGEYVAVSARGNFYSTWEPG-QAEWTP 203
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGY 271
H+R +RR+QNMG+ DG LWLL RGG L S+ EE+ EV P S +G+LD+GY
Sbjct: 204 HDRTSSRRLQNMGFGKDGRLWLLARGGQLQFSEPEAW-EEWGEVKYPEFSTSWGLLDMGY 262
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
R+ E WAAGGSG LL++ + G+TW +++ +NIA+N Y V FI+ ++GFVLG +G+LL+
Sbjct: 263 RTDTELWAAGGSGNLLRSLDDGETWEKDRDVENIASNFYRVVFISPEQGFVLGQNGILLK 322
Query: 332 Y 332
Y
Sbjct: 323 Y 323
>gi|434393223|ref|YP_007128170.1| Ycf48-like protein [Gloeocapsa sp. PCC 7428]
gi|428265064|gb|AFZ31010.1| Ycf48-like protein [Gloeocapsa sp. PCC 7428]
Length = 333
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 166/333 (49%), Gaps = 85/333 (25%)
Query: 72 VSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGF 131
V Q A + L++ L G P+ S + W+ + +P + L DIAF D HG+
Sbjct: 7 VWQQAAVLLTVILLCI-GCSNTPSISN---NPWKVITVPTESN--LQDIAFTDD--THGW 58
Query: 132 LLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV------------ 179
L+G++ LLET DGG+TW PR++ E+ NY F+SISF G+EGWIV
Sbjct: 59 LVGSKAALLETTDGGETWQPRTLDLGEQ---NYLFSSISFAGQEGWIVGEPALLLHTTDG 115
Query: 180 --------------GKPAILL-----------------HTSDAGESWERIP--------- 199
G P ++ T+D+G++W+ +
Sbjct: 116 GKSWEQIPLSEKLPGNPNTIVALGSHAAEMTTDVGAIYRTTDSGKTWKAMVQEAVGVVRN 175
Query: 200 ------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG 241
S PG A W+ HNR +RR+QNMG+ DG LW+L RGG
Sbjct: 176 IARAADGRYLAVSAKGNFYSIWEPGKEA-WEGHNRNSSRRVQNMGFAPDGRLWMLARGGQ 234
Query: 242 LFLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIRE 299
+ +K +E+EE P S +G+LD+ YR+ +E W AGGSG LL + +GGKTW ++
Sbjct: 235 VQFTKPDN-PDEWEEAQYPEFSTSWGLLDLAYRTPEEIWIAGGSGNLLCSFDGGKTWQKD 293
Query: 300 KAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+ + + +NLY + F+ +KGFV+G G+LL+Y
Sbjct: 294 REVEEVPSNLYKIVFLTPEKGFVVGQRGILLKY 326
>gi|428772636|ref|YP_007164424.1| Ycf48-like protein [Cyanobacterium stanieri PCC 7202]
gi|428686915|gb|AFZ46775.1| Ycf48-like protein [Cyanobacterium stanieri PCC 7202]
Length = 344
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 157/336 (46%), Gaps = 89/336 (26%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QF+ L +S A L P WE + + D D+AF DD +
Sbjct: 13 KQFIITITVGLLCVSCAFAPSLSSNP---------WETITLDTD--ATFADVAFT-DDQS 60
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH- 187
HG+L+GT+ L ET DGG TW + I EE+ FN +SF G+EGWI G+P+ILLH
Sbjct: 61 HGWLVGTKAALFETLDGGNTWQEKIIDLGEEK---ITFNGVSFYGEEGWISGEPSILLHT 117
Query: 188 ------------------------------------------TSDAGESWE--------- 196
TSD G++W+
Sbjct: 118 VDGGQNWERIPLSDQLPGLPYGITAIAPETAEMVTNLGAIYKTSDGGKTWKALVEGAVGV 177
Query: 197 -----RIP-------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
R P S+ +PGD W PH R +RR+QNMG+ D LWL+ R
Sbjct: 178 ARNVSRSPSGKYVAVSARGNFYSTWVPGDTE-WTPHLRNSSRRLQNMGFFDDERLWLIAR 236
Query: 239 GGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
GG + L+ E++EE P S +G LD+ R+++E W AGGSG LL + + G TW
Sbjct: 237 GGQIQLTSSKDF-EDWEEAINPEYSTSWGFLDLATRNEEEVWLAGGSGNLLVSNDEGLTW 295
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+++ +++ +NLY + F N +GFVLG G+LL+Y
Sbjct: 296 FKDREVEDVPSNLYRIVFPNPDQGFVLGQQGILLKY 331
>gi|11467320|ref|NP_043177.1| hypothetical protein CypaCp040 [Cyanophora paradoxa]
gi|1351794|sp|P48325.1|P2SAF_CYAPA RecName: Full=Photosystem II stability/assembly factor HCF136;
AltName: Full=ORF333; AltName: Full=Ycf48-like protein;
Flags: Precursor
gi|1016121|gb|AAA81208.1| putative protein of 333 amino acids [Cyanophora paradoxa]
Length = 333
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 147/305 (48%), Gaps = 81/305 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
WE+ IP++ +LLDI FVPD G+LLGTR TL ET D GKTW RS+ ED
Sbjct: 33 WEQ--IPLNTDEILLDIGFVPDQPQRGWLLGTRSTLFETTDKGKTWELRSL---NLEDDK 87
Query: 164 YRFNSISFKGKEGWIV--------------------------GKPAIL------------ 185
YR NSISF GKEGW+ G PA++
Sbjct: 88 YRLNSISFSGKEGWVTGKPAILLHTTDGGSSWSRIPLSNQLPGDPALITALGTGKAELAT 147
Query: 186 -----LHTSDAGESWE---RIPL------------------------SSQLPGDMAFWQP 213
T ++G++W+ + PL S+ GD W
Sbjct: 148 DIGAIYRTENSGQTWKAQIQEPLGVIRTVARSENGSYVAVSAKGNFYSTWKEGDDK-WIS 206
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG-----FGILD 268
H R +RRIQ+MG+ + LW+L RGG L+ S E E P G G+L+
Sbjct: 207 HPRQSSRRIQSMGFTNNNRLWMLTRGGQLWFSSNDSFDEPNWEGPKTPEGKVGFGLGLLN 266
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
+ +++ E W +GGSG+LL + + G TW +E + DNI +N Y + FI+++ GFVLGN G
Sbjct: 267 LAFKTPTEIWVSGGSGILLSSQDTGNTWKKETSTDNIPSNFYKISFIDKEVGFVLGNQGT 326
Query: 329 LLQYL 333
LL+Y+
Sbjct: 327 LLRYV 331
>gi|425447382|ref|ZP_18827371.1| Ycf48-like protein [Microcystis aeruginosa PCC 9443]
gi|425453413|ref|ZP_18833171.1| Ycf48-like protein [Microcystis aeruginosa PCC 9807]
gi|389732061|emb|CCI03941.1| Ycf48-like protein [Microcystis aeruginosa PCC 9443]
gi|389804479|emb|CCI16480.1| Ycf48-like protein [Microcystis aeruginosa PCC 9807]
Length = 330
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 156/335 (46%), Gaps = 87/335 (25%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QFV A S ++ L P W+ + +D DIAF DDL
Sbjct: 5 KQFVIVLAVAFFCFSCSSVPSLSNSP---------WQ--ILTLDTDSTFADIAFT-DDLQ 52
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI---- 184
HG+L+GT+ TL ET DGG W + + +E+ F+++SF +EGWIVGKP+I
Sbjct: 53 HGWLVGTKSTLFETSDGGNNWQQKVLNLGDEK---VSFSAVSFHNQEGWIVGKPSILLHS 109
Query: 185 ---------------------------------------LLHTSDAGESWERIP------ 199
+ T D G++W+ +
Sbjct: 110 EDGGSSWSRISLSEKLPGSPYGIIALNDKTAEMVTDLGAIYRTKDGGKTWQALVEGAVGV 169
Query: 200 ---------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
S+ PG WQPHNR +RR+Q +G+ +G LW L R
Sbjct: 170 ARTIVRSHDGKYVAVSARGNFYSTWEPGSTE-WQPHNRLSSRRLQKVGYGENGELWALAR 228
Query: 239 GGGL-FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI 297
GG L F S T E + P S +G+LD+ YR+ +E W AGGSG LL + + G++W
Sbjct: 229 GGQLQFTSPNDLDTWEDKVFPEFSTSWGLLDLNYRTPEEIWVAGGSGNLLVSDDNGQSWQ 288
Query: 298 REKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+++A +++ +NLY + FIN KGFVLG +GVLL+Y
Sbjct: 289 KDRAVESVPSNLYRIVFINSDKGFVLGQNGVLLKY 323
>gi|434400867|ref|YP_007134871.1| Ycf48-like protein [Stanieria cyanosphaera PCC 7437]
gi|428271964|gb|AFZ37905.1| Ycf48-like protein [Stanieria cyanosphaera PCC 7437]
Length = 331
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 148/304 (48%), Gaps = 86/304 (28%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ +P + +L DIAF D+ NHG+L+GT+ +L ET DGG TW + + ED
Sbjct: 35 WQIKTLPTE--AILSDIAFT-DNSNHGWLVGTQASLFETTDGGNTWQQKVL---NLEDEK 88
Query: 164 YRFNSISFKGKEGWIVGKPAI--------------------------------------- 184
F++ISF G+EGWIVGKP+I
Sbjct: 89 VSFSAISFAGEEGWIVGKPSILLHTEDGGTTWSRIPLSSKLPGAPDGIVALGTASAEMVT 148
Query: 185 ----LLHTSDAGESWERIP---------------------------LSSQLPGDMAFWQP 213
+ T+D G++W+ + S+ PG W P
Sbjct: 149 DLGAIYKTTDGGKTWKALVEGAVGVARHINRSADGKYVAVSARGNFYSTWEPGQTE-WTP 207
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEE-----VPVQSRGFGILD 268
H R +RR+QNMG+ +D LWLL RGG + S+ E+FE P S +G+LD
Sbjct: 208 HQRTSSRRLQNMGFNSDDSLWLLARGGQIQFSE----PEDFEAWQEPIYPEFSTSWGLLD 263
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
+ YR+ +E W AGGSG LL + + GKTW +++ + + +N Y V F++ ++GFVLG GV
Sbjct: 264 IAYRNPEEIWVAGGSGNLLASFDAGKTWQKDREVEEVPSNFYKVVFLSPEQGFVLGERGV 323
Query: 329 LLQY 332
LL+Y
Sbjct: 324 LLKY 327
>gi|332706507|ref|ZP_08426568.1| putative photosystem II protein [Moorea producens 3L]
gi|332354391|gb|EGJ33870.1| putative photosystem II protein [Moorea producens 3L]
Length = 330
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 151/301 (50%), Gaps = 80/301 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W + +P + + D+ F DL+HG+++G+ T+ ETKDGG TW + + +E N
Sbjct: 31 WAVISLPTE--ATMQDLGFT-GDLSHGWIVGSYATIFETKDGGNTWQQKGLDLGDE---N 84
Query: 164 YRFNSISFKGKEGWIVGKPAI--------------------------------------- 184
YRF+S+SF G EGWIVG+P+I
Sbjct: 85 YRFSSVSFAGDEGWIVGQPSIMLHTTDGGESWSRILLSEKLPGSPNRVLALGPNSAEMTT 144
Query: 185 ----LLHTSDAGESWE--------------------RIPLSSQ-------LPGDMAFWQP 213
+ T DAG++W+ + +S++ PG A W
Sbjct: 145 DVGAIYQTKDAGKTWKAQVAQAVGVTRNISRSEDGKYVAVSARGNFYSTWDPGQSA-WLQ 203
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGY 271
HNR ++R+QNMG+ DG LW+L RGG + S + E+++E P S G+LD+ Y
Sbjct: 204 HNRYSSKRLQNMGFTPDGRLWILARGGQVQFSSAEDL-EDWQEPMYPEVSNSLGLLDLAY 262
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
R+ +E W AGGSG LL + +GGKTW +++ ++ +N Y + F+ ++GFV+G G+LL+
Sbjct: 263 RTPNEIWLAGGSGNLLCSFDGGKTWQKDRDLKDVPSNFYKIVFVTPEQGFVIGQKGILLK 322
Query: 332 Y 332
Y
Sbjct: 323 Y 323
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 97 SEEALSAW-ERVYIPVDPGVVLLDIAF-VPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI 154
S E L W E +Y V + LLD+A+ P+++ +L G LL + DGGKTW
Sbjct: 236 SAEDLEDWQEPMYPEVSNSLGLLDLAYRTPNEI---WLAGGSGNLLCSFDGGKTWQ---- 288
Query: 155 PSAEEEDFNYRFNSISFKGKE-GWIVGKPAILL----HTSDA 191
+ +D F I F E G+++G+ ILL HT +A
Sbjct: 289 KDRDLKDVPSNFYKIVFVTPEQGFVIGQKGILLKYEPHTQEA 330
>gi|254422988|ref|ZP_05036706.1| BNR/Asp-box repeat domain protein [Synechococcus sp. PCC 7335]
gi|196190477|gb|EDX85441.1| BNR/Asp-box repeat domain protein [Synechococcus sp. PCC 7335]
Length = 325
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 147/303 (48%), Gaps = 79/303 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ + +P + + D+AF D HG+L+G+R TLLE+ D GKTW R + E D N
Sbjct: 25 WDVIALPTEASIS--DVAFASDG-EHGWLVGSRTTLLESTDAGKTWDTRIL---ELGDQN 78
Query: 164 YRFNSISFKGKEGWIV--------------------------GKPAI------------- 184
Y F SI F+G EGW+V G+P +
Sbjct: 79 YTFTSIDFEGDEGWLVGQPSIMLHTTDGGTSWSNIPLDPKLPGQPLLVTATGENSAELAT 138
Query: 185 ----LLHTSDAGESWERIP---------------------------LSSQLPGDMAFWQP 213
+ T D G+ W+ + S+ LPG A WQP
Sbjct: 139 DIGAIYVTEDGGQQWKGLVQSAVGVVRNMTRNSDGRYVAVSSRGNFYSTWLPGQEA-WQP 197
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGY 271
HNR ++R+QNMG+ DG LWL+ RGG + E++ + P + +G+LD+ Y
Sbjct: 198 HNRENSKRLQNMGFTKDGLLWLIARGGQIQFGTEQVEYEDWSDPINPEFASSWGLLDIAY 257
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
R+ +E W GGSG LL +T+GG+TW ++KA +N+ N Y KF+ +G++LG G LL+
Sbjct: 258 RTPEELWVTGGSGNLLVSTDGGETWAKDKAVENVPTNFYRAKFLGPDRGYILGQRGYLLR 317
Query: 332 YLG 334
Y+G
Sbjct: 318 YVG 320
>gi|428318110|ref|YP_007115992.1| Ycf48-like protein [Oscillatoria nigro-viridis PCC 7112]
gi|428241790|gb|AFZ07576.1| Ycf48-like protein [Oscillatoria nigro-viridis PCC 7112]
Length = 322
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 152/304 (50%), Gaps = 82/304 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ + +P + L DIAF + HG+++G+ TLLET DGG +W +SI + + +D
Sbjct: 23 WQVISLPTEAN--LQDIAFT-GNPQHGWVVGSEATLLETLDGGTSW--KSI-ALDIDDPR 76
Query: 164 YRFNSISFKGKEGWIVGKPAILLH------------------------------------ 187
RF S+SF G EGWIVG+P++LLH
Sbjct: 77 SRFASVSFSGSEGWIVGQPSVLLHTNDEGKSWTRIALSSQLPGSPSTIAALGPNSAQMTT 136
Query: 188 -------TSDAGESW--------------------ERIPLSSQ-------LPGDMAFWQP 213
TSD G++W + + +SS+ PG A W+P
Sbjct: 137 DVGAIYRTSDGGKNWKAVVQDSFGVVRNINRSEDGQYVAVSSKGNFYSVWKPGQAA-WEP 195
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT---GITEEFEEVPVQSRGFGILDVG 270
HNR +RR+QNMG+ DG LW+L RGG + S G + F P + +G+LD+
Sbjct: 196 HNRNSSRRLQNMGFTKDGRLWMLARGGQIQFSDPESPEGWGKPF--FPDRKASWGLLDMA 253
Query: 271 YRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
YR+ +E W AGG G LL + +GGKTW +++ +++ AN Y + F+ +GFVLG G LL
Sbjct: 254 YRTDNEVWVAGGGGNLLCSFDGGKTWQKDREVEDVPANFYRIVFMGPDRGFVLGASGTLL 313
Query: 331 QYLG 334
+Y G
Sbjct: 314 KYQG 317
>gi|334121114|ref|ZP_08495188.1| Ycf48-like protein [Microcoleus vaginatus FGP-2]
gi|333455400|gb|EGK84049.1| Ycf48-like protein [Microcoleus vaginatus FGP-2]
Length = 322
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 153/304 (50%), Gaps = 82/304 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ + +P + L DIAF + HG+++G+ TLLET DGG +W +SI + + +D
Sbjct: 23 WQVISLPTEAN--LQDIAFT-GNPQHGWVVGSEATLLETLDGGTSW--KSI-ALDIDDPR 76
Query: 164 YRFNSISFKGKEGWIVGKPAILLH------------------------------------ 187
RF S+SF G EGWIVG+P++LLH
Sbjct: 77 SRFASVSFSGSEGWIVGQPSVLLHTKDEGKSWTRIALSSQLPGSPSKVAALGPNSAEMTT 136
Query: 188 -------TSDAGESW--------------------ERIPLSSQ-------LPGDMAFWQP 213
TSD G++W + + +SS+ PG A W+P
Sbjct: 137 DVGAIYRTSDGGKNWKAVVQDSFGVVRNINRSEDGQYVAVSSKGNFYSVWKPGQEA-WEP 195
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT---GITEEFEEVPVQSRGFGILDVG 270
HNR +RR+QNMG+ DG LW+L RGG + S + G + F P + +G+LD+
Sbjct: 196 HNRNSSRRLQNMGFTKDGRLWMLARGGQIQFSDPSNPEGWGKPF--FPDRKASWGLLDMA 253
Query: 271 YRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
YR+ +E W AGG G LL + +GGKTW +++ +++ AN Y + F+ +GFV+G G LL
Sbjct: 254 YRTDNEVWVAGGGGNLLCSLDGGKTWQKDREVEDVPANFYRIVFMGPDRGFVIGASGTLL 313
Query: 331 QYLG 334
+Y G
Sbjct: 314 KYQG 317
>gi|443313335|ref|ZP_21042947.1| putative photosystem II stability/assembly factor-like protein
[Synechocystis sp. PCC 7509]
gi|442776740|gb|ELR87021.1| putative photosystem II stability/assembly factor-like protein
[Synechocystis sp. PCC 7509]
Length = 335
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 149/300 (49%), Gaps = 78/300 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ + +P + DI F +D HG+L+G++ T+LET DGG++W S+ E+ N
Sbjct: 35 WQVLTVPSEAN--FQDITFT-NDSQHGWLVGSKSTILETHDGGESWQQVSLDLDEK---N 88
Query: 164 YRFNSISFKGKEGWIVGKPAI--------------------------------------- 184
F S+SF G EGWI G+P+I
Sbjct: 89 NLFTSVSFDGDEGWITGEPSILLHTTDKGETWSRIPLSEKLPGKPDTIIALGASSAEMTT 148
Query: 185 ----LLHTSDAGESWERIP---------------------------LSSQLPGDMAFWQP 213
+ T+D G++W+ + S+ PG A WQ
Sbjct: 149 DVGAIYRTTDGGKNWKAMVQEAVGVVRNIERSDDGKYLAVSAKGNFYSTWEPGQEA-WQG 207
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFE-EVPVQSRGFGILDVGYR 272
HNR +RR+QNMG+ DG LW+L RGG + S+ + E E + P S +G++D+ YR
Sbjct: 208 HNRNSSRRVQNMGFGKDGRLWMLARGGQIQFSQPNTLDEWDEAQYPELSTSWGLIDLAYR 267
Query: 273 SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+ +E W AGGSG LL + +GGKTW++++ +N+ +NLY + F+ +GF++G GVLL+Y
Sbjct: 268 TPEEIWLAGGSGNLLCSFDGGKTWLKDREIENVPSNLYKIVFVKPDQGFIIGQRGVLLKY 327
>gi|428297562|ref|YP_007135868.1| Ycf48-like protein [Calothrix sp. PCC 6303]
gi|428234106|gb|AFY99895.1| Ycf48-like protein [Calothrix sp. PCC 6303]
Length = 339
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 150/305 (49%), Gaps = 77/305 (25%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
A + W+ + + +D LLDIAF ++ HGF++G+ TLLETKD G+TW + E
Sbjct: 31 AYNPWKVISVDIDADTKLLDIAFA-ENQEHGFMVGSNATLLETKDAGETWEAIKLSLDSE 89
Query: 160 EDFNYRFNSISFKGKEGWIVGKPAILLH-------------------------------- 187
+ RFN +SF GKEGWIVG+PA++LH
Sbjct: 90 KS---RFNGVSFAGKEGWIVGEPALVLHSTDAGKSWLQIPLDEKLPGNPINIAALSGNTA 146
Query: 188 -----------TSDAGESWE--------------RIP-------------LSSQLPGDMA 209
TSD G++W+ R P S+ PG A
Sbjct: 147 EMATDVGAIYQTSDGGKNWKAQVQDAVGVVRNITRSPDGKYVAISAKGNFYSTWEPGTAA 206
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFE-EVPVQSRGFGILD 268
W P NR +RR++NMG+ ++G LW+L RGG + + + + + P + + +LD
Sbjct: 207 -WVPRNRNSSRRLENMGFTSEGKLWMLARGGQIQFTDPEDDEKWLDPQKPEKGYSWALLD 265
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN-DG 327
+ YR+ D+ WA GGSG LL + +GGKTW ++ + + AN + V F + ++GF +G+ G
Sbjct: 266 MAYRNSDDVWATGGSGSLLHSPDGGKTWEKDTEMEEVPANFFKVVFFSPEQGFAIGDRGG 325
Query: 328 VLLQY 332
LL+Y
Sbjct: 326 YLLKY 330
>gi|170076859|ref|YP_001733497.1| Ycf48-like protein [Synechococcus sp. PCC 7002]
gi|75449718|sp|Q8RSW4.1|YC48L_SYNP2 RecName: Full=Ycf48-like protein; Flags: Precursor
gi|18762538|gb|AAL78083.1| HCF136-like protein [Synechococcus sp. PCC 7002]
gi|169884528|gb|ACA98241.1| conserved hypothetical protein, HCF136 like protein [Synechococcus
sp. PCC 7002]
Length = 340
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 158/338 (46%), Gaps = 90/338 (26%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
++ ++ A L L I G + P SE + W+ + + D +IAF DDL
Sbjct: 12 KKAIAAIAVLVLCI------GCVQAPTISE---NPWQEIDLNTDS--TFANIAFT-DDLQ 59
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI---- 184
HG+L+GT++TL ET DGGKTWA R I +E++ F +SF G+EGWI G+P+I
Sbjct: 60 HGWLVGTKETLFETTDGGKTWAERVIDLGDEKE---SFTGVSFSGQEGWITGRPSILLHT 116
Query: 185 ---------------------------------------LLHTSDAGESWERIP------ 199
+ T+D G++W+ +
Sbjct: 117 DDGGEHWSRIALSSQLPGAPYNITALGPNTAEMVTDLGAIYKTTDGGKNWKALVEGAVGV 176
Query: 200 ---------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
S+ PGD W PHNR +RR+Q+MG+ + LWLL R
Sbjct: 177 ARTIERSADGKYVAVSARGNFYSTWSPGDTE-WTPHNRNSSRRLQSMGFNGEDKLWLLAR 235
Query: 239 GGGLFLSKGTGI--TEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGK 294
GG + S T E + E P G+L +GYR+ E WA GGSG ++ + +GG
Sbjct: 236 GGVVQFSDDTNPDNAEAWSEPVTPQYRNSVGLLHIGYRTPAELWAVGGSGSVVVSKDGGD 295
Query: 295 TWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
TW R+ A + I N Y V F+NE KGF+LG GV+L+Y
Sbjct: 296 TWFRDAALEEIPTNFYRVVFLNENKGFILGQQGVILRY 333
>gi|81299987|ref|YP_400195.1| Ycf48-like protein [Synechococcus elongatus PCC 7942]
gi|108861977|sp|Q31P11.1|YC48L_SYNE7 RecName: Full=Ycf48-like protein; Flags: Precursor
gi|81168868|gb|ABB57208.1| photosystem II stability/assembly factor [Synechococcus elongatus
PCC 7942]
Length = 349
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 145/299 (48%), Gaps = 89/299 (29%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LDIAF + HG+L+GT L ET DGG++W+ R++ + D YR NSISFKG E
Sbjct: 52 TILDIAFTSNK-QHGWLVGTDLALYETLDGGQSWSERAL----DLDETYRLNSISFKGDE 106
Query: 176 GWIVGKP-------------------------------------------AILLHTSDAG 192
GW+VG+P A + + D G
Sbjct: 107 GWVVGQPSLMLHTTDGGKNWLRIPLSEKLPGSPLLVTALGKGEAEMATDVAAIYRSRDGG 166
Query: 193 ESWE-RIP--------------------------LSSQLPGDMAFWQPHNRAVARRIQNM 225
+SW+ ++P S+ PGD W PH R +RR+Q M
Sbjct: 167 KSWQAQVPDAAGVARSVSRSRDGRYLAVSARGNFYSTWKPGDTT-WTPHQRTSSRRLQLM 225
Query: 226 GWRADGGLWLLVRGGGLFLSKGTGITEEFEEV------------PVQSRGFGILDVGYRS 273
G+ D WL+ RGG L SK + I + +EE+ P ++ G+G LD+ YRS
Sbjct: 226 GFGPDDRTWLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRS 284
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+ E W +GGSG LL + +GG+ W R++ + +NLY++KF K+GFVLG G+LL+Y
Sbjct: 285 KQEIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLRY 343
>gi|428769079|ref|YP_007160869.1| Ycf48-like protein [Cyanobacterium aponinum PCC 10605]
gi|428683358|gb|AFZ52825.1| Ycf48-like protein [Cyanobacterium aponinum PCC 10605]
Length = 341
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 143/298 (47%), Gaps = 81/298 (27%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
I +D DI F +D NHG+L+GTR TL ETKDGG W + I EE+ F
Sbjct: 38 ISLDAESTFADIDFT-NDSNHGWLVGTRATLFETKDGGDNWQQKIIDLGEEK---VNFTG 93
Query: 169 ISFKGKEGWIVGKPAILLH----------------------------------------- 187
+SF EGWI G P++LLH
Sbjct: 94 VSFYDNEGWITGMPSVLLHTNNGGETWERIPLSEKLPGSPYDITALDDQTAEMVTNLGAI 153
Query: 188 --TSDAGESWERIP---------------------------LSSQLPGDMAFWQPHNRAV 218
T+D G++W+ + S+ PGD W PH R
Sbjct: 154 YKTTDGGKTWKALVEGAVGVARSITRSADGKYVAVSARGNFYSTWQPGDTE-WTPHQRTS 212
Query: 219 ARRIQNMGWRADGG--LWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQ 274
+RR+QNMG+ DGG LWL+ RGG + SK EE+EE P + +G LD+ ++Q
Sbjct: 213 SRRLQNMGF-LDGGDRLWLIARGGQIQFSKPNNF-EEWEEAITPEYATSWGFLDLTVQNQ 270
Query: 275 DEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
++ W AGGSG LL + + G++W +++ +++ +NLY + F+ + KGF+LG GVLL+Y
Sbjct: 271 EQIWLAGGSGNLLLSKDNGQSWFKDREIESVPSNLYKIVFVGDNKGFILGERGVLLKY 328
>gi|428777198|ref|YP_007168985.1| Ycf48-like protein [Halothece sp. PCC 7418]
gi|428691477|gb|AFZ44771.1| Ycf48-like protein [Halothece sp. PCC 7418]
Length = 335
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 157/343 (45%), Gaps = 94/343 (27%)
Query: 67 NRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDD 126
N +Q V +A L++S + P + E L P + ++ +D PD
Sbjct: 7 NIKQIVLWSAIALLTVSCSQVPSTESNPWRVLENL--------PTEQTLLDIDFTGNPD- 57
Query: 127 LNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI-- 184
G+++G + TLL+T+DGG TW + EE+ F S+SFKG+EGWIVG+P+I
Sbjct: 58 --QGWMVGNQATLLKTEDGGDTWQQEELQLGEEK---LDFLSVSFKGEEGWIVGEPSILL 112
Query: 185 -----------------------------------------LLHTSDAGESWERIP---- 199
+ T++ G++WE +
Sbjct: 113 HTTDGGENWSRIQLSEKLPGEPYSIIALGENSAEMTTNVGAIYQTNNGGKNWEALVEEAV 172
Query: 200 -----------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
S+ PGD A WQPH R +RR+QNMG+ DG +WLL
Sbjct: 173 GVARNISRSEDGKYVAVSARGNFYSTWTPGDQA-WQPHERNTSRRVQNMGFTPDGRVWLL 231
Query: 237 VRGGGLFLSKGTGITEEFE-----EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTN 291
RGG + ++ +E+F+ E P S G G+LD+GYR+ DE W +GGSG L +
Sbjct: 232 ARGGQIQFTE----SEDFDSWQDPEYPEFSSGKGLLDIGYRNSDELWVSGGSGDLFLRSE 287
Query: 292 GGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
W +++ + N Y VKF N +KGF+LG+ G +L+Y G
Sbjct: 288 TEGVWKKDRDVQQVPGNFYRVKFFNPEKGFILGDRGTVLKYEG 330
>gi|384244848|gb|EIE18345.1| photosystem II stability/assembly factor HCF136 [Coccomyxa
subellipsoidea C-169]
Length = 301
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Query: 205 PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGF 264
PG +WQPHNR ARR+QNMGW LWL RGG ++LS +GI+E F++ + SRGF
Sbjct: 172 PG-QTYWQPHNRPTARRVQNMGWTPSNSLWLATRGGDVYLSPESGISERFDQAKLGSRGF 230
Query: 265 GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
GILDVG+ +A GGSG LLK+ + G TW R+++ D IA NLY +KF GF+LG
Sbjct: 231 GILDVGFSPSKVGYAVGGSGTLLKSEDNGATWKRDRSTDGIAGNLYEIKFTESGSGFILG 290
Query: 325 NDGVLLQYL 333
NDG+LL+Y+
Sbjct: 291 NDGILLRYI 299
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 72/78 (92%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTS 189
GFLLG+R+TLLETKDGG+TW PRS+ +A++E FNYRFNSISF GKEGWIVGKPAILL T+
Sbjct: 6 GFLLGSRETLLETKDGGRTWEPRSVAAAKDEGFNYRFNSISFNGKEGWIVGKPAILLRTT 65
Query: 190 DAGESWERIPLSSQLPGD 207
D G++WER+PLS++LPG+
Sbjct: 66 DGGDNWERVPLSAKLPGN 83
>gi|56750381|ref|YP_171082.1| Ycf48-like protein [Synechococcus elongatus PCC 6301]
gi|81596703|sp|Q5N557.1|YC48L_SYNP6 RecName: Full=Ycf48-like protein; Flags: Precursor
gi|56685340|dbj|BAD78562.1| photosystem II stability/assembly factor [Synechococcus elongatus
PCC 6301]
Length = 349
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 144/299 (48%), Gaps = 89/299 (29%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LDIAF + HG+L+GT L ET DG ++W+ R++ + D YR NSISFKG E
Sbjct: 52 TILDIAFTSNK-QHGWLVGTDLALYETLDGEQSWSERAL----DLDETYRLNSISFKGDE 106
Query: 176 GWIVGKP-------------------------------------------AILLHTSDAG 192
GW+VG+P A + + D G
Sbjct: 107 GWVVGQPSLMLHTTDGGKNWLRIPLSEKLPGSPLLVTALGKGEAEMATDVAAIYRSRDGG 166
Query: 193 ESWE-RIP--------------------------LSSQLPGDMAFWQPHNRAVARRIQNM 225
+SW+ ++P S+ PGD W PH R +RR+Q M
Sbjct: 167 KSWQAQVPDAAGVARSVSRSRDGRYLAVSARGNFYSTWKPGDTT-WTPHQRTSSRRLQLM 225
Query: 226 GWRADGGLWLLVRGGGLFLSKGTGITEEFEEV------------PVQSRGFGILDVGYRS 273
G+ D WL+ RGG L SK + I + +EE+ P ++ G+G LD+ YRS
Sbjct: 226 GFGPDDRTWLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRS 284
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+ E W +GGSG LL + +GG+ W R++ + +NLY++KF K+GFVLG G+LL+Y
Sbjct: 285 KQEIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLRY 343
>gi|409990500|ref|ZP_11273865.1| photosystem II assembly protein [Arthrospira platensis str. Paraca]
gi|291566376|dbj|BAI88648.1| photosystem II stability/assembly factor [Arthrospira platensis
NIES-39]
gi|409938635|gb|EKN79934.1| photosystem II assembly protein [Arthrospira platensis str. Paraca]
Length = 334
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 147/306 (48%), Gaps = 78/306 (25%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
+ + WE V PV L DI FV D+ +HG+++G+ TLLET+DGGKTW + + E
Sbjct: 30 SYNPWELV--PVATDAKLFDIDFV-DNSDHGWIVGSNATLLETQDGGKTWETKQLDLDEP 86
Query: 160 EDFNYRFNSISFKGKEGWIVGKPAILL--------------------------------- 186
N S+SF G EGW+VG+P++LL
Sbjct: 87 ---NLLLTSVSFSGSEGWVVGEPSVLLHSTDGGKSWTRIALSNKLPGAPNNIVALGPSAA 143
Query: 187 ----------HTSDAGESWERIP---------------------------LSSQLPGDMA 209
T D G++W+ + S+ PG +
Sbjct: 144 EMTTNVGAIYQTKDGGQTWQAMVEDAVGVIRSLSRSEQGEYVTVSAKGNFYSTWEPGQTS 203
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV-PVQSRGFGILD 268
W PH R ++R++ +G+ D LW+L RGG + S E + + P S +G+LD
Sbjct: 204 -WTPHIRYSSKRLEKIGFGQDNRLWMLARGGEIRFSDPNDPEEWSDPIKPEFSTSWGLLD 262
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
+ YR+ +E W GGSG LL + +GG+TW +++ ++I +N Y ++F++ K+GF+LG G
Sbjct: 263 LAYRTPEEIWVTGGSGNLLCSFDGGETWQKDRKVEDIPSNFYRIEFMSPKRGFILGQRGT 322
Query: 329 LLQYLG 334
LL+Y G
Sbjct: 323 LLRYTG 328
>gi|159476190|ref|XP_001696194.1| photosystem II stability/assembly factor HCF136 [Chlamydomonas
reinhardtii]
gi|158282419|gb|EDP08171.1| photosystem II stability/assembly factor HCF136 [Chlamydomonas
reinhardtii]
Length = 302
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 95/131 (72%), Gaps = 2/131 (1%)
Query: 205 PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI-TEEFEEVPVQSRG 263
PG +W PHNR RR+QNMG+ G +W+ RGG + +S+ G+ +E+F++V + SRG
Sbjct: 170 PG-QTYWMPHNRPAPRRLQNMGFTPAGEVWVTTRGGDVLVSEDAGLASEKFKDVTINSRG 228
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
FGILDVG+R A+A GGSG L ++ +GGK W R+++ D++A NLY++KF N + GFVL
Sbjct: 229 FGILDVGFRDDKVAFACGGSGSLYRSEDGGKNWKRDRSTDDVAGNLYAIKFFNPQLGFVL 288
Query: 324 GNDGVLLQYLG 334
GNDG+LL+Y G
Sbjct: 289 GNDGILLRYTG 299
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/77 (85%), Positives = 70/77 (90%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTS 189
GFLLGTRQTLLET DGGKTWAPRSI +A +E FNYRFNSISF GKEGWIVGKPAILLHTS
Sbjct: 6 GFLLGTRQTLLETNDGGKTWAPRSIDAARDEGFNYRFNSISFAGKEGWIVGKPAILLHTS 65
Query: 190 DAGESWERIPLSSQLPG 206
D G +WERIPLSS+LPG
Sbjct: 66 DGGANWERIPLSSKLPG 82
>gi|126658551|ref|ZP_01729698.1| hypothetical protein CY0110_25556 [Cyanothece sp. CCY0110]
gi|126620138|gb|EAZ90860.1| hypothetical protein CY0110_25556 [Cyanothece sp. CCY0110]
Length = 330
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/336 (30%), Positives = 155/336 (46%), Gaps = 89/336 (26%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QFV A IS + P W+ + + D V DIAF DD +
Sbjct: 5 KQFVILIAVSLFCISCSQVPSTLNNP---------WKTLSLETD--VTFADIAFT-DDPD 52
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGK-------------- 174
HG+L+GT+ L ET DGG TW R + +E+ F +SF G
Sbjct: 53 HGWLVGTKAALFETNDGGDTWEARKLDLGDEK---VSFTGVSFNGDEGWITGKPAILLHT 109
Query: 175 ----EGW-------------------------IVGKPAILLHTSDAGESW---------- 195
E W IV + T + G++W
Sbjct: 110 EDGGENWARIPLSEKLPGAPDGVIALGPETAEIVTNLGAIYKTDNGGKTWSALVEGAVGV 169
Query: 196 ----ERIP-------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
+R P S+ PG + W PHNR +RR+Q +G+ GGLWL+ R
Sbjct: 170 ARNIQRSPDGRYVAVSARGNFYSTWEPG-QSEWTPHNRNSSRRLQAVGYSEKGGLWLIAR 228
Query: 239 GGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
GG L + + E+++EV P S +G+LD+ YR+ +E W AGGSG LL +++ G+TW
Sbjct: 229 GGQLQFTPPEDL-EDWQEVVYPEPSTSWGLLDLAYRTPEEVWVAGGSGNLLVSSDSGETW 287
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+++A +++ +NLY + F+N +KGF+LG DG+LL+Y
Sbjct: 288 KKDRAIESVPSNLYKIVFVNREKGFILGQDGILLKY 323
>gi|428780227|ref|YP_007172013.1| photosystem II stability/assembly factor-like protein
[Dactylococcopsis salina PCC 8305]
gi|428694506|gb|AFZ50656.1| putative photosystem II stability/assembly factor-like protein
[Dactylococcopsis salina PCC 8305]
Length = 335
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/341 (30%), Positives = 156/341 (45%), Gaps = 94/341 (27%)
Query: 67 NRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDD 126
N +QFV +A ++S + P + E L E +LD+AF D
Sbjct: 7 NIKQFVLWSAIALFTVSCSQVPSTESNPWRVLENLPTEE----------TMLDLAFTGDP 56
Query: 127 LNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV------- 179
NHG+++G + TLLET DGG+TW + + E E+ F S+SF G+EGWI
Sbjct: 57 -NHGWMVGNQATLLETTDGGETWERKEL---ELENEKLDFLSVSFVGEEGWIAGEPSVLL 112
Query: 180 -------------------GKP-----------------AILLHTSDAGESWE------- 196
G+P + T++ G++W+
Sbjct: 113 HTKDGGEHWSRIPLSKKLPGEPYSIIAKGEDTAEMTTNVGAIYETTNGGKNWQALVQEAV 172
Query: 197 -------RIP-------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
R P S+ PGD A WQ H R +RR+QNMG+ DG +WLL
Sbjct: 173 GVARNISRSPDGKYITVSARGNFYSTWTPGDQA-WQAHERNTSRRVQNMGFTPDGRVWLL 231
Query: 237 VRGGGLFLSKGTGITEEFE-----EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTN 291
RGG + ++ +E+F+ E P S G+LD+GYR++DE W +GGSG L +
Sbjct: 232 ARGGQVQFTE----SEDFDSWQEPEYPEFSSSKGLLDIGYRTEDEFWVSGGSGDLFRYAQ 287
Query: 292 GGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
W +++ N+ N Y VKF + +KGF+LG+ G +L+Y
Sbjct: 288 TKGVWEKDREMQNVPGNFYRVKFFSPEKGFILGDRGTVLKY 328
>gi|423064726|ref|ZP_17053516.1| glycosyl hydrolase BNR repeat protein [Arthrospira platensis C1]
gi|406713969|gb|EKD09137.1| glycosyl hydrolase BNR repeat protein [Arthrospira platensis C1]
Length = 337
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 161/340 (47%), Gaps = 80/340 (23%)
Query: 66 LNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPD 125
+N+ QF L++ I++A + + + + WE V PV L DI FV D
Sbjct: 1 MNQMQFPKFLKKLAILIAVALFCASCDY--LPDVSYNPWELV--PVATDAKLFDIDFV-D 55
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI- 184
+ +HG+++G+ TLLET DGGKTW + + + ++ N S+SF G EGWIVG+P++
Sbjct: 56 NSDHGWIVGSNATLLETYDGGKTWETKQL---DLDEPNLLLTSVSFSGSEGWIVGEPSVL 112
Query: 185 ------------------------------------------LLHTSDAGESWERIP--- 199
+ T D G++W+ +
Sbjct: 113 LHSTDGGKSWTRIALSNKLPGAPNNIVALGPSAAEMTTNVGAIYQTKDGGKTWQAMVEDA 172
Query: 200 ------------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
S+ PG + W PH R ++R++ +G+ D LW+
Sbjct: 173 VGVIRSLSRSEQGEYVTVSAKGNFYSTWEPGQTS-WTPHIRYSSKRLEKIGFGQDNRLWM 231
Query: 236 LVRGGGLFLSKGTGITEEFEEV-PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGK 294
L RGG + S E + + P S +G+LD+ YR+ +E W AGGSG LL + +GG+
Sbjct: 232 LARGGEIRFSDPNDPEEWSDPIKPEFSTSWGLLDLAYRTPEEIWVAGGSGNLLCSFDGGE 291
Query: 295 TWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
W +++ ++I +N Y ++FI+ ++GF+LG G LL+Y G
Sbjct: 292 AWQKDREVEDIPSNFYRIEFISPERGFILGQRGTLLRYTG 331
>gi|427724667|ref|YP_007071944.1| Ycf48-like protein [Leptolyngbya sp. PCC 7376]
gi|427356387|gb|AFY39110.1| Ycf48-like protein [Leptolyngbya sp. PCC 7376]
Length = 341
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 155/330 (46%), Gaps = 78/330 (23%)
Query: 74 QTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLL 133
+T L++++ L+ G E P E + W+ I +D +IAF DDLNHG+L+
Sbjct: 12 RTIILAIAV-LSLCMGCVEAPTMVSE--NPWQE--IDLDTDATFANIAFT-DDLNHGWLV 65
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEE-EDFN-YRFN----------SISFKGKEG---W- 177
GT++TL ET DGG+TW R I EE E F FN SI +G W
Sbjct: 66 GTKETLFETTDGGETWEERIINLGEEKESFTGVSFNGEEGWITGRPSILLHTNDGGANWS 125
Query: 178 ------------------------IVGKPAILLHTSDAGESWERIP-------------- 199
+V + T+D G+ W+ +
Sbjct: 126 RIALSNKLPGAPYNITALAPNTAEMVTDLGAIYKTTDGGKHWKALVEGAVGVARTIERSD 185
Query: 200 -------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK 246
S+ PGD + W PHNR +RR+Q+MG+ + LWLL RGG + S
Sbjct: 186 DGKYVAVSARGNFYSTWSPGD-SEWTPHNRNSSRRLQSMGFDGNDHLWLLARGGVVQFSD 244
Query: 247 GTG--ITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
T E + + P G+L +GYR+ DE WA GGSG L+ + +GG+TW R+
Sbjct: 245 STNPDNAEAWGDAITPQYRNSVGLLHIGYRTPDELWAVGGSGSLVVSEDGGETWFRDAEI 304
Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+++ N Y V F+NE+KGF+LG GV+L+Y
Sbjct: 305 EDVPTNFYRVVFLNEEKGFILGQQGVILRY 334
>gi|67925855|ref|ZP_00519145.1| Glycosyl hydrolase, BNR repeat [Crocosphaera watsonii WH 8501]
gi|67852296|gb|EAM47765.1| Glycosyl hydrolase, BNR repeat [Crocosphaera watsonii WH 8501]
Length = 330
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 154/336 (45%), Gaps = 89/336 (26%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QFV A L IS + + P W+ + + D V DIAF DD +
Sbjct: 5 KQFVILIAISLLCISCSRVPSTLDNP---------WKALSLETD--VTFADIAFT-DDPD 52
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGK-------------- 174
HG+L+GT+ L ET DGG +W R + E D F +SF G+
Sbjct: 53 HGWLVGTKAALFETTDGGDSWEERKL---EIGDDKASFTGVSFNGEEGWITGKPAILLHT 109
Query: 175 ----EGW-------------------------IVGKPAILLHTSDAGESW---------- 195
E W +V + T + G++W
Sbjct: 110 EDGGENWSRIPLSEKLPGAPDGVVALAPETAEMVTNLGAIYRTDNGGKTWNALVEGAVGV 169
Query: 196 ----ERIP-------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
ER P S+ PG W PHNR +RR+Q MG+ +GGLWLL R
Sbjct: 170 ARNIERSPDGRYVAVSARGNFYSTWEPG-QGEWTPHNRNSSRRLQAMGYSGEGGLWLLAR 228
Query: 239 GGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
GG L S + E+++EV P S +G+L + YR+ +E W AGGSG LL + + G+TW
Sbjct: 229 GGQLQFSPPEDL-EDWQEVVYPEPSTSWGLLHLAYRTPEELWVAGGSGNLLVSFDNGETW 287
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+++ +++ +NLY + F+N +KGF+LG DGVLL+Y
Sbjct: 288 EKDRTIESVPSNLYKIVFVNAEKGFILGQDGVLLKY 323
>gi|108861975|sp|Q2JW20.2|YC48L_SYNJA RecName: Full=Ycf48-like protein; Flags: Precursor
Length = 334
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 144/323 (44%), Gaps = 75/323 (23%)
Query: 82 ISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLE 141
+ LAA + L + + W++V +P +LLDIAF + +HG+L+G + TLLE
Sbjct: 11 VLLAAFSLLLMAARMPDMKVVPWQQVEVPTQN--ILLDIAFTGTNPSHGWLVGDKATLLE 68
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLS 201
++DGG W R + + E E + +SISF G EGW+VG+P ILLHT + G W I LS
Sbjct: 69 SQDGGLHWQVRKLTALEPEAY---LSSISFAGAEGWVVGQPRILLHTLNEGSDWTSIRLS 125
Query: 202 SQLPGDMAFWQPHNRAVARRIQNMG-----------W---------------RADGGLWL 235
QLPG+ Q A + N+G W R GG +L
Sbjct: 126 KQLPGEPILIQALGPGAAEMVTNVGAIYRTEDGGQTWHAQVEEPIGAIKNIARGPGGEYL 185
Query: 236 LVRGGGLFLSKGTGITEEFEEVP------VQSRGF------------------------- 264
V G F T + ++ P +Q+ GF
Sbjct: 186 AVSSRGSFYFLYTPESRSWKPYPRESSRRIQNMGFGPNGSAWKLNQGAEIAFTSDFTSGE 245
Query: 265 -------------GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYS 311
G L+ Y++ + W GG G L+ + +GGKTW K NI AN YS
Sbjct: 246 WSKPLRPGRALSFGYLNAAYQNDHDLWVVGGGGTLIHSPDGGKTWEEAKKLSNIPANFYS 305
Query: 312 VKFINEKKGFVLGNDGVLLQYLG 334
++F +GF+LG G LL+Y+G
Sbjct: 306 IEFFGPDRGFILGQRGTLLRYVG 328
>gi|86605552|ref|YP_474315.1| Ycf48-like protein [Synechococcus sp. JA-3-3Ab]
gi|86554094|gb|ABC99052.1| BNR/Asp-box repeat protein [Synechococcus sp. JA-3-3Ab]
Length = 324
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 143/321 (44%), Gaps = 75/321 (23%)
Query: 84 LAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETK 143
LAA + L + + W++V +P +LLDIAF + +HG+L+G + TLLE++
Sbjct: 3 LAAFSLLLMAARMPDMKVVPWQQVEVPTQ--NILLDIAFTGTNPSHGWLVGDKATLLESQ 60
Query: 144 DGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQ 203
DGG W R + + E E + +SISF G EGW+VG+P ILLHT + G W I LS Q
Sbjct: 61 DGGLHWQVRKLTALEPEAY---LSSISFAGAEGWVVGQPRILLHTLNEGSDWTSIRLSKQ 117
Query: 204 LPGDMAFWQPHNRAVARRIQNMG-----------W---------------RADGGLWLLV 237
LPG+ Q A + N+G W R GG +L V
Sbjct: 118 LPGEPILIQALGPGAAEMVTNVGAIYRTEDGGQTWHAQVEEPIGAIKNIARGPGGEYLAV 177
Query: 238 RGGGLFLSKGTGITEEFEEVP------VQSRGF--------------------------- 264
G F T + ++ P +Q+ GF
Sbjct: 178 SSRGSFYFLYTPESRSWKPYPRESSRRIQNMGFGPNGSAWKLNQGAEIAFTSDFTSGEWS 237
Query: 265 -----------GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVK 313
G L+ Y++ + W GG G L+ + +GGKTW K NI AN YS++
Sbjct: 238 KPLRPGRALSFGYLNAAYQNDHDLWVVGGGGTLIHSPDGGKTWEEAKKLSNIPANFYSIE 297
Query: 314 FINEKKGFVLGNDGVLLQYLG 334
F +GF+LG G LL+Y+G
Sbjct: 298 FFGPDRGFILGQRGTLLRYVG 318
>gi|416393476|ref|ZP_11686006.1| Photosystem II stability/assembly factor HCF136/Ycf48 [Crocosphaera
watsonii WH 0003]
gi|357263472|gb|EHJ12475.1| Photosystem II stability/assembly factor HCF136/Ycf48 [Crocosphaera
watsonii WH 0003]
Length = 330
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 153/336 (45%), Gaps = 89/336 (26%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QFV A L IS + + P W+ + + D V DIAF DD +
Sbjct: 5 KQFVILIAISLLCISCSRVPSTLDNP---------WKALSLETD--VTFADIAFT-DDPD 52
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK---------------- 172
HG+L+GT+ L ET DGG +W R + E D F +SF
Sbjct: 53 HGWLVGTKAALFETTDGGDSWEERKL---EIGDDKASFTGVSFNGEEGWITGKPAILLHT 109
Query: 173 --GKEGW-------------------------IVGKPAILLHTSDAGESW---------- 195
G E W +V + T + G++W
Sbjct: 110 EDGGENWSRIPLSEKLPGAPDGVVALAPETAEMVTNLGAIYKTDNGGKTWNALVEGAVGV 169
Query: 196 ----ERIP-------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
ER P S+ PG W PHNR +RR+Q MG+ +GGLWLL R
Sbjct: 170 ARNIERSPDGRYVAVSARGNFYSTWEPG-QGEWTPHNRNSSRRLQAMGYSGEGGLWLLAR 228
Query: 239 GGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
GG L S + E+++EV P S +G+L + YR+ +E W AGGSG LL + + G+TW
Sbjct: 229 GGQLQFSPPEDL-EDWQEVVYPEPSTSWGLLHLAYRTPEELWVAGGSGNLLVSFDNGETW 287
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+++ +++ +NLY + F+N +KGF+LG DGVLL+Y
Sbjct: 288 EKDRTIESVPSNLYKIVFVNAEKGFILGQDGVLLKY 323
>gi|209527586|ref|ZP_03276087.1| glycosyl hydrolase, BNR repeat [Arthrospira maxima CS-328]
gi|376006358|ref|ZP_09783639.1| Ycf48-like protein [Arthrospira sp. PCC 8005]
gi|209492009|gb|EDZ92363.1| glycosyl hydrolase, BNR repeat [Arthrospira maxima CS-328]
gi|375325249|emb|CCE19392.1| Ycf48-like protein [Arthrospira sp. PCC 8005]
Length = 334
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 147/306 (48%), Gaps = 78/306 (25%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
+ + WE V PV L DI FV D+ +HG+++G+ TLLET DGGKTW + + +
Sbjct: 30 SYNPWELV--PVATDAKLFDIDFV-DNSDHGWIVGSNATLLETYDGGKTWETKQL---DL 83
Query: 160 EDFNYRFNSISFKGKEGWIVGKPAI----------------------------------- 184
++ N S+SF G EGWIVG+P++
Sbjct: 84 DEPNLLLTSVSFSGSEGWIVGEPSVLLHSTDGGKSWTRIALSNKLPGAPNNIVALGPSAA 143
Query: 185 --------LLHTSDAGESWERIP---------------------------LSSQLPGDMA 209
+ T D G++W+ + S+ PG +
Sbjct: 144 EMTTNVGAIYQTKDGGKTWQAMVEDAVGVIRSLSRSEQGEYVTVSAKGNFYSTWEPGQTS 203
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV-PVQSRGFGILD 268
W PH R ++R++ +G+ D LW+L RGG + S E + + P S +G+LD
Sbjct: 204 -WTPHIRYSSKRLEKIGFGQDNRLWMLARGGEIRFSDPNDPEEWSDPIKPEFSTSWGLLD 262
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
+ YR+ +E W AGGSG LL + +GG+ W +++ ++I +N Y ++FI+ ++GF+LG G
Sbjct: 263 LAYRTPEEIWVAGGSGNLLCSFDGGEAWQKDREVEDIPSNFYRIEFISPERGFILGQRGT 322
Query: 329 LLQYLG 334
LL+Y G
Sbjct: 323 LLRYTG 328
>gi|422304298|ref|ZP_16391645.1| Ycf48-like protein [Microcystis aeruginosa PCC 9806]
gi|389790618|emb|CCI13522.1| Ycf48-like protein [Microcystis aeruginosa PCC 9806]
Length = 330
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 148/332 (44%), Gaps = 81/332 (24%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QFV A S + L P W+ + + D DIAF DDL
Sbjct: 5 KQFVIVLAVAFFCFSCSNVPSLSNSP---------WQILTLDTDS--TFADIAFT-DDLQ 52
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE------DFNYR----------------- 165
HG+L+GT+ TL ET DGG +W + + +E+ F+ +
Sbjct: 53 HGWLVGTKSTLFETSDGGDSWQQKVLNLGDEKVSFSAVSFHNQEGWIVGKPSILLHSEDG 112
Query: 166 -----------------FNSISFKGKEGWIVGKPAILLHTSDAGESWERIP--------- 199
+ I+ K +V + T D G++W+ +
Sbjct: 113 GSSWSRIPLSEKLPGSPYGIIALNDKTAEMVTDLGAIYRTKDGGKTWQALVEGAVGVART 172
Query: 200 ------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG 241
S+ PG WQPHNR +RR+Q +G+ G LW L RGG
Sbjct: 173 IVRSHDGKYVAVSARGNFYSTWEPGSTE-WQPHNRLSSRRLQKVGYGEKGELWALARGGQ 231
Query: 242 L-FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREK 300
L F S T E + P S +G+LD+ YR+ +E W AGGSG LL + +GG++W +++
Sbjct: 232 LQFTSPNDLDTWEDKVFPEFSTSWGLLDLNYRTPEEIWVAGGSGNLLVSDDGGQSWQKDR 291
Query: 301 AADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
A +++ +NLY + FIN KGFVLG DGVLL+Y
Sbjct: 292 AVESVPSNLYRIVFINSDKGFVLGQDGVLLKY 323
>gi|425439198|ref|ZP_18819529.1| Ycf48-like protein [Microcystis aeruginosa PCC 9717]
gi|389714870|emb|CCI00587.1| Ycf48-like protein [Microcystis aeruginosa PCC 9717]
Length = 330
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 141/294 (47%), Gaps = 74/294 (25%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
+ +D DIAF DDL HG+L+GT+ TL ET DGG +W + + EE+ F++
Sbjct: 34 LTLDTDSTFADIAFT-DDLQHGWLVGTKSTLFETTDGGDSWQQKVLNLGEEK---VSFSA 89
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG-- 226
+SF +EGWIVGKP+ILLH+ D G SW RIPLS +LPG N A + ++G
Sbjct: 90 VSFHDQEGWIVGKPSILLHSEDGGSSWSRIPLSEKLPGSPYGIIALNDKTAEMVTDLGAI 149
Query: 227 WRA-DGG-LWLLVRGGGLFLSKGTGITEEFEEVPVQSRG--------------------- 263
+R DGG W + G + +++ + + + V V +RG
Sbjct: 150 YRTKDGGKTWQALVEGAVGVARTIVRSHDGKYVAVSARGNFYSTWEPGSTEWQPHNRLSS 209
Query: 264 FGILDVGYRSQDEAWA-------------------------------------------- 279
+ VGY + E WA
Sbjct: 210 RRLQKVGYGEKGELWALARGGQLQFTSPNDLDTWEDKVFPEFSTSWGLLDLNYRSPEEIW 269
Query: 280 -AGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
AGGSG LL + + G++W +++A +++ +NLY + FIN KGFVLG DGVLL+Y
Sbjct: 270 VAGGSGNLLVSHDSGQSWQKDRAVESVPSNLYRIVFINSDKGFVLGQDGVLLKY 323
>gi|87300569|ref|ZP_01083411.1| plant photosystem II stability/assembly factor-like protein
[Synechococcus sp. WH 5701]
gi|87284440|gb|EAQ76392.1| plant photosystem II stability/assembly factor-like protein
[Synechococcus sp. WH 5701]
Length = 331
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 78/289 (26%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+AF D HGFL+G+ + +LET+DGG +W R++ A ED N+R SI F GKEGW
Sbjct: 49 LDLAFTDD--RHGFLVGSNRLILETEDGGASWQARAL--ALPEDENFRLLSIDFNGKEGW 104
Query: 178 IVGKPAILLH-------------------------------------------TSDAGES 194
I G+P +LLH TSD G S
Sbjct: 105 IAGQPGLLLHSTDGGQNWERLLLDTKLPGDPYLITALDTGKAELATTVGAIYRTSDGGGS 164
Query: 195 WE--------------RIP-------------LSSQLPGDMAFWQPHNRAVARRIQNMGW 227
W+ R P ++ PG A W+PH R ++R+Q+MG+
Sbjct: 165 WQAEVSDAAGAVRDLRRAPDGRYVSVSSLGNFFATWGPG-QATWEPHQRISSQRLQSMGF 223
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
+ DG LW++ RG L + E + + +P+ + G+G LD+ + WA GGSG
Sbjct: 224 QPDGNLWMVTRGAQLRFNPDAADVEAWSKPVIPI-TNGYGYLDMAWDPNGAIWAGGGSGT 282
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
LL + +GG +W R+ A + N + F + KGF+LG G LL+++G
Sbjct: 283 LLVSEDGGSSWKRDPLAGSQPTNFTRIVFNGDGKGFLLGERGNLLRWVG 331
>gi|33860854|ref|NP_892415.1| hypothetical protein PMM0296 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|81576410|sp|Q7V301.1|YC48L_PROMP RecName: Full=Ycf48-like protein; Flags: Precursor
gi|33633796|emb|CAE18755.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 337
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 154/343 (44%), Gaps = 84/343 (24%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
++FV+ L L+ +L S WE + LDI F+ D N
Sbjct: 2 KKFVTSIPNLLLTFTLCFVLSSCSSTGVKMSESSPWETIQFEDQSNA--LDIDFI--DNN 57
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH- 187
HGFL+G+ + ++E+ DGGK+W RS+ A EE N+R I FKG EGW++G+P++++H
Sbjct: 58 HGFLVGSNRLIMESNDGGKSWEKRSLDIAAEE--NFRLLDIDFKGSEGWLIGQPSLVMHT 115
Query: 188 -----------------------------------------TSDAGESWE---------- 196
TS++GE+WE
Sbjct: 116 IDEGKNWTRLSLGKLPGQPFLVSTVDDGVAELATTSAAIYTTSNSGETWEAKVSDPSEQG 175
Query: 197 ------------RIPLSS------QLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
+ +SS L W H RA ++R+Q +G+ DG LW+L R
Sbjct: 176 GIRDLRRTSNGDYVSVSSLGNFFSTLESGSDTWIAHQRASSKRVQGIGFNPDGNLWMLSR 235
Query: 239 GGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
G + + + E + + VP+ + G+ LD+G+ + WA GG+G L+ + + GKTW
Sbjct: 236 GAEIRFNDDSNDLESWTKPIVPILN-GYNYLDMGWDPEGNIWAGGGNGTLIVSKDDGKTW 294
Query: 297 IREKAADNIAANLYSVKF-----INEKKGFVLGNDGVLLQYLG 334
+ A N+ N ++F ++ KKGF+LG G +L++ G
Sbjct: 295 DSDPVASNLPTNFIKIQFLEKDELDAKKGFILGERGYILRWNG 337
>gi|425466608|ref|ZP_18845906.1| Ycf48-like protein [Microcystis aeruginosa PCC 9809]
gi|190192148|dbj|BAG48283.1| Ycf48-like protein [Microcystis aeruginosa NIES-843]
gi|389830833|emb|CCI26897.1| Ycf48-like protein [Microcystis aeruginosa PCC 9809]
Length = 330
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 141/294 (47%), Gaps = 74/294 (25%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
+ +D DIAF DDL HG+L+GT+ TL ET DGG +W + + EE+ F++
Sbjct: 34 LTLDTDSTFADIAFT-DDLQHGWLVGTKSTLFETTDGGDSWQQKVLNLGEEK---VSFSA 89
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG-- 226
+SF +EGWIVGKP+ILLH+ D G SW RIPLS +LPG N A + ++G
Sbjct: 90 VSFHDQEGWIVGKPSILLHSEDGGSSWSRIPLSEKLPGSPYGIIALNDKTAEMVTDLGAI 149
Query: 227 WRA-DGG-LWLLVRGGGLFLSKGTGITEEFEEVPVQSRG--------------------- 263
+R DGG W + G + +++ + + + V V +RG
Sbjct: 150 YRTKDGGKTWQALVEGAVGVARTIVRSHDGKYVAVSARGNFYSTWEPGSTEWQPHNRLSS 209
Query: 264 FGILDVGYRSQDEAWA-------------------------------------------- 279
+ VGY + E WA
Sbjct: 210 RRLQKVGYGEKGELWALARGGQLQFTSPNDLDTWEDKVFPEFSTSWGLLDLNYRSPEEIW 269
Query: 280 -AGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
AGGSG LL + + G++W +++A +++ +NLY + FIN KGFVLG +GVLL+Y
Sbjct: 270 VAGGSGNLLVSHDSGQSWQKDRAVESVPSNLYRIVFINSDKGFVLGQNGVLLKY 323
>gi|428201315|ref|YP_007079904.1| putative photosystem II stability/assembly factor-like protein
[Pleurocapsa sp. PCC 7327]
gi|427978747|gb|AFY76347.1| putative photosystem II stability/assembly factor-like protein
[Pleurocapsa sp. PCC 7327]
Length = 331
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 71/283 (25%)
Query: 119 DIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE------DFNYRFNSISFK 172
D+AF DD NHG+L+G++ L ET DGGKTW + + EE+ FN + I+ K
Sbjct: 44 DLAFT-DDPNHGWLVGSQAALFETTDGGKTWQEKKLDLGEEKASFTAVSFNGQEGWITGK 102
Query: 173 ---------GKEGW-------------------------IVGKPAILLHTSDAGESWERI 198
G + W +V + TS+ G +W+ +
Sbjct: 103 PSILLHTEDGGQSWSRIPLSEKLPGAPNGIVALGSKMAEMVTDLGAIYKTSNGGRTWQAL 162
Query: 199 P---------------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADG 231
S+ PG W PHNR +RR+Q MG+ DG
Sbjct: 163 VEGAVGVARTIARSADGKYVAVSARGNFYSTWEPGQTE-WTPHNRTSSRRLQTMGYSEDG 221
Query: 232 GLWLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKT 289
LWLL RGG + + G EE+ EV P S +G+LD+ YR+ +E W +GGSG +L +
Sbjct: 222 RLWLLARGGQIQFASTDGQDEEWGEVIYPEPSTSWGLLDLAYRTPEEIWVSGGSGNVLVS 281
Query: 290 TNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+ GKTW +++ ++ +NLY + F+ +KGF+LG GVLL+Y
Sbjct: 282 FDNGKTWQKDREIEDTPSNLYKIVFVTPEKGFILGQKGVLLRY 324
>gi|317968576|ref|ZP_07969966.1| Ycf48-like protein [Synechococcus sp. CB0205]
Length = 327
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 138/289 (47%), Gaps = 78/289 (26%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+AF D +HGFL+G+ + +LET D G +W ++ EEE N+R S+ F G EGW
Sbjct: 45 LDLAFT--DSSHGFLVGSNRLILETNDAGASWTEMALDLPEEE--NFRLISVDFSGDEGW 100
Query: 178 IVGKPAILLH-------------------------------------------TSDAGES 194
IVG+P +LLH T+DAG S
Sbjct: 101 IVGQPGLLLHSEDAGQNWSRLFLDTKLPGEPYMVTALGKRSAELATNVGAVYRTNDAGGS 160
Query: 195 WE--------------RIPLSSQL-------------PGDMAFWQPHNRAVARRIQNMGW 227
W+ R P + + PG+ W PH R ++R+Q+MG+
Sbjct: 161 WQAQVEDAVGAVRDLRRSPEGNYISVSSLGNFFATWSPGE-PRWTPHQRESSQRLQSMGF 219
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
+ +G LW+L RG L ++ EE+ + VP+ + G+G LD+ + WA GGSG
Sbjct: 220 QPNGNLWMLARGAQLRFNEDASTPEEWSKPVVPI-TNGYGYLDMAWDPSGTIWAGGGSGT 278
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
LL +++ G++W ++ + N + F ++ KGFVLG G LL+++G
Sbjct: 279 LLVSSDNGQSWQKDPVGEKQPTNFSHIAFFSDGKGFVLGERGSLLRWVG 327
>gi|318042793|ref|ZP_07974749.1| Ycf48-like protein [Synechococcus sp. CB0101]
Length = 331
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 135/289 (46%), Gaps = 78/289 (26%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+AF D HGFL+G+ + +LET DGG +W R++ EEE N+R S+ F G EGW
Sbjct: 49 LDLAFT--DSRHGFLVGSNRLILETNDGGSSWQERALDLPEEE--NFRLISVDFAGDEGW 104
Query: 178 IVGKPAI-------------------------------------------LLHTSDAGES 194
IVG+P + + T+D G S
Sbjct: 105 IVGQPGLLLHSTDGGQNWSRLFLDTKLPGEPYLVTAQGGNRAELATNVGAVYRTNDGGNS 164
Query: 195 WE--------------RIP-------------LSSQLPGDMAFWQPHNRAVARRIQNMGW 227
W+ R P ++ PG+ W PH R ++R+Q MG+
Sbjct: 165 WQAEVEDAAGAVRDLRRSPDGRYVSVSSLGNFFATWNPGE-PRWTPHQRVSSQRLQAMGF 223
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
+ DG LW+L RG L S +E+ + VP+ + G+G LD+ + Q + W GGSG
Sbjct: 224 QPDGALWMLARGAQLRFSPEADTPDEWSKPVVPIVN-GYGYLDMAWDPQGDIWTGGGSGT 282
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
LL +++GGK+W ++ N + F ++ KGFVLG G LL+++G
Sbjct: 283 LLVSSDGGKSWQKDPVGAQQPTNFIRIAFFDDGKGFVLGERGSLLRWVG 331
>gi|427734530|ref|YP_007054074.1| putative photosystem II stability/assembly factor-like protein
[Rivularia sp. PCC 7116]
gi|427369571|gb|AFY53527.1| putative photosystem II stability/assembly factor-like protein
[Rivularia sp. PCC 7116]
Length = 340
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 142/298 (47%), Gaps = 74/298 (24%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP------------ 151
WE + +P D L DIAF DD NHGF++G + TLLETKD G+TW P
Sbjct: 35 WEVISLPTDSK--LFDIAFT-DDPNHGFIVGNKATLLETKDAGETWNPIVLQVGDENYRF 91
Query: 152 -----------------------------RSIPSAEEEDFNYRFNSISFKGKEGWIVGKP 182
SIP +E+ N N ++F + +
Sbjct: 92 NAIDFHGNEGWIAAEPSILLHTSDEGKTWTSIPLSEKLPGN-PVNIVAFGDNKAEMATDV 150
Query: 183 AILLHTSDAGESW--------------ERIP-------------LSSQLPGDMAFWQPHN 215
+ T D G++W ER S+ PG A W HN
Sbjct: 151 GAIYKTEDGGKNWKAQVAESVGVVRNIERSEDGKYIAVSGKGNFYSTWEPGQNA-WVQHN 209
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFE-EVPVQSRGFGILDVGYRSQ 274
R +R+++NMG+ +G +W+L RGG + S+ + E + + P S +G+LD+ YR+
Sbjct: 210 RNSSRKVENMGFAQNGQMWMLARGGQVQFSEPNSLEEWLDAQYPELSTSWGLLDLAYRTP 269
Query: 275 DEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
E W +GGS LL +++GG+TW +++ +++A N Y V F++ +KGFV+G+ G LL+Y
Sbjct: 270 SEIWLSGGSANLLHSSDGGQTWEKDRDVEDVATNFYKVVFLSPEKGFVIGDRGFLLKY 327
>gi|390440288|ref|ZP_10228631.1| Ycf48-like protein [Microcystis sp. T1-4]
gi|389836298|emb|CCI32757.1| Ycf48-like protein [Microcystis sp. T1-4]
Length = 330
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 147/332 (44%), Gaps = 81/332 (24%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QFV A S + L P W+ + + D DIAF DD
Sbjct: 5 KQFVIVLAVAFFCFSCSNVPSLSSSP---------WQILTLDTDS--TFADIAFT-DDSQ 52
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE------DFNYR----------------- 165
HG+L+GT+ TL ET DGG +W + + +E+ F+ +
Sbjct: 53 HGWLVGTKSTLFETTDGGDSWQQKVLNLGDEKVSFSAVSFHDQEGWIVGKPSILLHSEDG 112
Query: 166 -----------------FNSISFKGKEGWIVGKPAILLHTSDAGESWERIP--------- 199
+ I+ K +V + T D G++W+ +
Sbjct: 113 GSSWSRIPLSEKLPGSPYGIIALNDKTAEMVTDLGAIYRTKDGGKTWQALVEGAVGVART 172
Query: 200 ------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG 241
S+ PG WQPHNR +RR+Q +G+ G LW L RGG
Sbjct: 173 IVRSHDGKYVAVSARGNFYSTWEPGSTE-WQPHNRLSSRRLQKVGYGEKGELWALARGGQ 231
Query: 242 L-FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREK 300
L F S T E + P S +G+LD+ YR+ +E W AGGSG LL + +GG++W +++
Sbjct: 232 LQFTSPNDLDTWEDKVFPEFSTSWGLLDLNYRTPEEIWVAGGSGNLLVSDDGGQSWQKDR 291
Query: 301 AADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
A +++ +NLY + FIN KGFVLG DGVLL+Y
Sbjct: 292 AVESVPSNLYRIVFINSDKGFVLGQDGVLLKY 323
>gi|425435203|ref|ZP_18815661.1| Ycf48-like protein [Microcystis aeruginosa PCC 9432]
gi|425449650|ref|ZP_18829486.1| Ycf48-like protein [Microcystis aeruginosa PCC 7941]
gi|440754708|ref|ZP_20933910.1| photosystem II stability/assembly factor [Microcystis aeruginosa
TAIHU98]
gi|389680279|emb|CCH91013.1| Ycf48-like protein [Microcystis aeruginosa PCC 9432]
gi|389763571|emb|CCI09923.1| Ycf48-like protein [Microcystis aeruginosa PCC 7941]
gi|440174914|gb|ELP54283.1| photosystem II stability/assembly factor [Microcystis aeruginosa
TAIHU98]
Length = 330
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 148/332 (44%), Gaps = 81/332 (24%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QFV A S ++ L P W+ + +D DIAF DDL
Sbjct: 5 KQFVIVLAVAFFCFSCSSVPSLSNSP---------WQ--ILTLDTDSTFADIAFT-DDLQ 52
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE------DFNYR----------------- 165
HG+L+GT+ TL ET DGG +W + + +E+ F+ +
Sbjct: 53 HGWLVGTKSTLFETSDGGNSWQQKVLNLGDEKVSFSAVSFHDQEGWIVGKPSILLHSEDG 112
Query: 166 -----------------FNSISFKGKEGWIVGKPAILLHTSDAGESWERIP--------- 199
+ I+ K +V + T D G++W+ +
Sbjct: 113 GSSWSRISLSEKLPGSPYGIIALNDKTAEMVTDLGAIYRTKDGGKTWQALVEGAVGVART 172
Query: 200 ------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG 241
S+ PG WQPHNR +RR+Q +G+ G LW L RGG
Sbjct: 173 IVRSHDGKYVAVSARGNFYSTWEPGSTE-WQPHNRLSSRRLQKVGYGEKGELWALARGGQ 231
Query: 242 L-FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREK 300
L F S T E + P S +G+LD+ YR+ +E W AGGSG LL + + G++W +++
Sbjct: 232 LQFTSPNDLDTWEDKVFPEFSTSWGLLDLNYRTPEEIWVAGGSGNLLVSHDNGQSWQKDR 291
Query: 301 AADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
A +++ +NLY + FIN KGFVLG +GVLL+Y
Sbjct: 292 AVESVPSNLYRIVFINSDKGFVLGQNGVLLKY 323
>gi|443669555|ref|ZP_21134763.1| BNR/Asp-box repeat family protein [Microcystis aeruginosa
DIANCHI905]
gi|443330160|gb|ELS44900.1| BNR/Asp-box repeat family protein [Microcystis aeruginosa
DIANCHI905]
Length = 308
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 141/294 (47%), Gaps = 74/294 (25%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
+ +D DIAF DL HG+L+GT+ TL ET DGG +W + + +E+ F++
Sbjct: 12 LTLDTDSTFADIAFT-SDLQHGWLVGTKSTLFETSDGGDSWQQKVLNLGDEK---VSFSA 67
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG-- 226
+SF +EGWIVGKP+ILLH+ D G SW RIPLS +LPG N A + ++G
Sbjct: 68 VSFHDQEGWIVGKPSILLHSEDGGSSWSRIPLSEKLPGSPYGIIALNDKTAEMVTDLGAI 127
Query: 227 WRA-DGG-LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGF-------------------- 264
+R DGG W + G + +++ + + + V V +RG
Sbjct: 128 YRTKDGGKTWQALVEGAVGVARTIVRSHDGKYVAVSARGNFYSTWEPGSTEWQPHNRLSS 187
Query: 265 -GILDVGYRSQDEAWA-------------------------------------------- 279
+ VGY + E WA
Sbjct: 188 RRLQKVGYGEKGELWALARGGQLQFTSPNDLDTWEDKVFPEFSTSWGLLDLNYRTPEEIW 247
Query: 280 -AGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
AGGSG LL + +GG++W +++A +++ +NLY + FIN KGFVLG +GVLL+Y
Sbjct: 248 VAGGSGNLLVSDDGGQSWQKDRAVESVPSNLYRIVFINSDKGFVLGQNGVLLKY 301
>gi|307154239|ref|YP_003889623.1| hypothetical protein Cyan7822_4434 [Cyanothece sp. PCC 7822]
gi|306984467|gb|ADN16348.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
Length = 334
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 135/286 (47%), Gaps = 78/286 (27%)
Query: 119 DIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK------ 172
D+AF D NHG+++GT+ TL ET DGG W R + EE+ F+ +SF
Sbjct: 48 DVAFTSDP-NHGWIVGTQATLFETTDGGDNWEERKLDLGEEK---VSFDGVSFNGDEGWI 103
Query: 173 ------------GKEGW-------------------------IVGKPAILLHTSDAGESW 195
G + W +V + T+D G +W
Sbjct: 104 TGKPAILLHTEDGGQTWSRIPLSEKLPGAPYNIVALAPQTAEMVTDLGAIYRTTDGGRTW 163
Query: 196 ERIP---------------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWR 228
+ + S+ PG + W PHNR +RR+Q MG+
Sbjct: 164 KALVEGAVGVARNIRRSSDGKYVAVSARGNFYSTWEPG-QSEWTPHNRNSSRRLQTMGYA 222
Query: 229 ADGGLWLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
+GGLWL+ RGG L + + E ++E P S +G+LD+ YR+ +E W AGGSG L
Sbjct: 223 DNGGLWLIARGGQLQFTSPEDL-ETWDEALYPEFSTSWGLLDLSYRTPEEMWIAGGSGNL 281
Query: 287 LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
L + + GKTW +++ +N+ +NLY + F+N +KGFVLG GVLL+Y
Sbjct: 282 LVSFDNGKTWEKDREVENVPSNLYKIVFVNSEKGFVLGQKGVLLKY 327
>gi|300869234|ref|ZP_07113828.1| Ycf48-like protein [Oscillatoria sp. PCC 6506]
gi|300332779|emb|CBN59026.1| Ycf48-like protein [Oscillatoria sp. PCC 6506]
Length = 330
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 147/297 (49%), Gaps = 76/297 (25%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
+P+ L D+AF + HG+++G+ TLLETKDGG+ W ++ ED RF+S
Sbjct: 34 VPLPTKANLQDVAFT-GNPQHGWIVGSDTTLLETKDGGENWQAIAL---NLEDARSRFSS 89
Query: 169 ISFKGKEGWIVGKPAILLH----------------------------------------- 187
+SF G EGWIVG+P++LLH
Sbjct: 90 VSFSGSEGWIVGQPSVLLHTEDEGKSWTRIALSSQLPGSPSTIVALGPQSAEMTTDVGAI 149
Query: 188 --TSDAGESW--------------------ERIPLSSQ-------LPGDMAFWQPHNRAV 218
T+D G++W + + +SS+ PG A W P+NR
Sbjct: 150 YQTADGGKTWKALVQEAFGVVRNINRSPDGQYVAVSSKGNFYSIWQPGQDA-WTPYNRNS 208
Query: 219 ARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV-PVQSRGFGILDVGYRSQDEA 277
+RR+QNMG+ DG LW+L RGG + S E E P + +G+LD+ YR+ DE
Sbjct: 209 SRRLQNMGFGKDGRLWMLERGGQIQFSDPQNRDEWGEPFSPDRKASWGLLDLVYRTNDEI 268
Query: 278 WAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
W AGG G LL + +GGKTW +++ +++ AN Y + F+ +KGF++G G LL+Y G
Sbjct: 269 WLAGGGGNLLCSFDGGKTWQKDREVEDVPANFYKIVFMTPEKGFIIGATGTLLKYQG 325
>gi|427703375|ref|YP_007046597.1| photosystem II stability/assembly factor-like protein [Cyanobium
gracile PCC 6307]
gi|427346543|gb|AFY29256.1| putative photosystem II stability/assembly factor-like protein
[Cyanobium gracile PCC 6307]
Length = 346
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 138/311 (44%), Gaps = 83/311 (26%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
A S W+ V P+D LD+AF D HGFL+G+ + ++ET DGG +W R++ EE
Sbjct: 43 AASPWQAV--PLDTRSNPLDVAFSSAD--HGFLVGSNRLIMETDDGGASWQERALDLPEE 98
Query: 160 EDFNYRFNSISFKGKEGWIVGKPAILLH-------------------------------- 187
E N+R SI F G EGWIVG+P +LLH
Sbjct: 99 E--NFRLISIDFSGPEGWIVGQPGLLLHSDDAGSSWSRLLLDTKLPGEPYVVTALGPKTA 156
Query: 188 -----------TSDAGESWERI---------PLSSQLPGD-----------------MAF 210
T+DAG SW+ + L GD +
Sbjct: 157 ELATNVGAVYRTTDAGSSWQALVGDAAGAIRDLRRSADGDYVSVSSLGNFFATWEPGLPA 216
Query: 211 WQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEE-------VPVQSRG 263
WQ H R ++R+Q+MG++ DG LW++ RG L E E +P+ + G
Sbjct: 217 WQVHQRVSSQRLQSMGFQPDGHLWMVARGAQLRFDGDPSTAESTESGDWSKPVIPI-TNG 275
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
+G LD+ + + W GG+G LL + + G +W R+ N + F + KGFVL
Sbjct: 276 YGYLDMAWDPRGAIWTGGGNGTLLVSNDAGASWQRDPVGSEQPTNFSRIVFAPDGKGFVL 335
Query: 324 GNDGVLLQYLG 334
G GVLL+++G
Sbjct: 336 GERGVLLRWVG 346
>gi|159026415|emb|CAO87924.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 330
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 147/332 (44%), Gaps = 81/332 (24%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QFV A S + L P W+ + + D DIAF DL
Sbjct: 5 KQFVIVLAVAFFCFSCSNVPSLSNSP---------WQILTLDTDS--TFADIAFT-SDLQ 52
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE------DFNYR----------------- 165
HG+L+GT+ TL ET DGG +W + + +E+ F+ +
Sbjct: 53 HGWLVGTKSTLFETSDGGDSWQQKVLNLGDEKVSFSAVSFHDQEGWIVGKPSILLHSEDG 112
Query: 166 -----------------FNSISFKGKEGWIVGKPAILLHTSDAGESWERIP--------- 199
+ I+ K +V + T D G++W+ +
Sbjct: 113 GSSWSRIPLSEKLPGSPYGIIALNDKTAEMVTDLGAIYRTKDGGKTWQALVEGAVGVART 172
Query: 200 ------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG 241
S+ PG WQPHNR +RR+Q +G+ G LW L RGG
Sbjct: 173 IVRSHDGKYVAVSARGNFYSTWEPGSTE-WQPHNRLSSRRLQKVGYGEKGELWALARGGQ 231
Query: 242 L-FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREK 300
L F S T E + P S +G+LD+ YR+ +E W AGGSG LL + +GG++W +++
Sbjct: 232 LQFTSPNDLDTWEDKVFPEFSTSWGLLDLNYRTPEEIWVAGGSGNLLVSDDGGQSWQKDR 291
Query: 301 AADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
A +++ +NLY + FIN KGFVLG +GVLL+Y
Sbjct: 292 AVESVPSNLYRIVFINSDKGFVLGQNGVLLKY 323
>gi|425460834|ref|ZP_18840314.1| Ycf48-like protein [Microcystis aeruginosa PCC 9808]
gi|389826442|emb|CCI23044.1| Ycf48-like protein [Microcystis aeruginosa PCC 9808]
Length = 330
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 146/332 (43%), Gaps = 81/332 (24%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QFV A S + L P W+ + + D DIAF DL
Sbjct: 5 KQFVIVLAVAFFCFSCSNVPSLSNSP---------WQILTLDTDS--TFADIAFT-SDLQ 52
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE------DFNYR----------------- 165
HG+L+GT+ TL ET DGG +W + + +E+ F+ +
Sbjct: 53 HGWLVGTKSTLFETSDGGDSWQQKVLNLGDEKVSFSAVSFHDQEGWIVGKPSILLHSEDG 112
Query: 166 -----------------FNSISFKGKEGWIVGKPAILLHTSDAGESWERIP--------- 199
+ I+ K +V + T D G++W+ +
Sbjct: 113 GSSWSRISLSEKLPGSPYGIIALNDKTAEMVTDLGAIYRTKDGGKTWQALVEGAVGVART 172
Query: 200 ------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG 241
S+ PG WQPHNR +RR+Q +G+ G LW L RGG
Sbjct: 173 IVRSHDGKYVAVSARGNFYSTWEPGSTE-WQPHNRLSSRRLQKVGYGEKGELWALARGGQ 231
Query: 242 L-FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREK 300
L F S T E + P S +G+LD+ YR+ +E W AGGSG LL + + G++W +++
Sbjct: 232 LQFTSPNDLDTWEDKVFPEFSTSWGLLDLNYRTPEEIWVAGGSGNLLVSHDNGQSWQKDR 291
Query: 301 AADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
A +++ +NLY + FIN KGFVLG DGVLL+Y
Sbjct: 292 AVESVPSNLYRIVFINSDKGFVLGQDGVLLKY 323
>gi|425470771|ref|ZP_18849631.1| Ycf48-like protein [Microcystis aeruginosa PCC 9701]
gi|389883467|emb|CCI36139.1| Ycf48-like protein [Microcystis aeruginosa PCC 9701]
Length = 330
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 146/332 (43%), Gaps = 81/332 (24%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QFV A S + L P W+ + +D DIAF DD
Sbjct: 5 KQFVIVLAVAFFCFSCSNVPSLSSSP---------WQ--ILTLDTDSTFADIAFT-DDPQ 52
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE------DFNYR----------------- 165
HG+L+GT+ TL ET DGG +W + + +E+ F+ +
Sbjct: 53 HGWLVGTKSTLFETSDGGDSWQQKVLNLGDEKVSFSAVSFHDQEGWIVGKPSILLHSEDG 112
Query: 166 -----------------FNSISFKGKEGWIVGKPAILLHTSDAGESWERIP--------- 199
+ I+ K +V + T D G++W+ +
Sbjct: 113 GSSWSRIPLSEKLPGSPYGIIALNDKTAEMVTDLGAIYRTKDGGKTWQALVEGAVGVART 172
Query: 200 ------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG 241
S+ PG WQPHNR +RR+Q +G+ G LW L RGG
Sbjct: 173 IVRSHDGKYVAVSARGNFYSTWEPGSTE-WQPHNRLSSRRLQKVGYGEKGELWALARGGQ 231
Query: 242 L-FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREK 300
L F S T E + P S +G+LD+ YRS +E W AGGSG LL + + G++W +++
Sbjct: 232 LQFTSPNDLDTWEDKVFPEFSTSWGLLDLNYRSPEEIWVAGGSGNLLVSHDNGQSWQKDR 291
Query: 301 AADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
A +++ +NLY + FIN KGFVLG +GVLL+Y
Sbjct: 292 AVESVPSNLYRIVFINSDKGFVLGQNGVLLKY 323
>gi|86609600|ref|YP_478362.1| Ycf48-like protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|108861976|sp|Q2JJR3.1|YC48L_SYNJB RecName: Full=Ycf48-like protein; Flags: Precursor
gi|86558142|gb|ABD03099.1| BNR/Asp-box repeat protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 333
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 133/300 (44%), Gaps = 75/300 (25%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W++V +P +LLDIAF +HG+L+G + TLLE++DGG W R +P E E +
Sbjct: 34 WQQVEVPTQ--NILLDIAFTGTTPSHGWLVGDKATLLESRDGGLHWQVRELPGLEPEAY- 90
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQ 223
SISF G EGW+ G+P ILLHT + G W I L++QLPG+ Q A +
Sbjct: 91 --LASISFAGAEGWVAGQPKILLHTLNEGSDWTSIRLNNQLPGEPLLIQALGPGAAEMVT 148
Query: 224 NMG-----------W---------------RADGGLWLLVRGGGLFLSKGTGITEEFEEV 257
N+G W R G +L V G F T + ++
Sbjct: 149 NVGAIYRTEDGGQTWHAQVDEPIGAIKNIARGPEGEYLAVSSRGSFYFLYTPESRTWKPY 208
Query: 258 P------VQSRGFG---------------------------------ILDVGY-----RS 273
P +Q+ GFG L GY ++
Sbjct: 209 PRESSRRIQNMGFGPHGSAWKLNQGAEIAFTDDFTSGQWSSPLRPGRALSFGYLNAAYQN 268
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
+ W GG L+ + +GGKTW + K NI AN YS++F ++GF+LG G LL+Y+
Sbjct: 269 DHDLWVVGGGATLIHSPDGGKTWEQAKKLSNIPANFYSIEFFGPEQGFILGQRGTLLRYV 328
>gi|16329683|ref|NP_440411.1| hypothetical protein slr2034 [Synechocystis sp. PCC 6803]
gi|383321425|ref|YP_005382278.1| hypothetical protein SYNGTI_0516 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383324595|ref|YP_005385448.1| hypothetical protein SYNPCCP_0516 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383490479|ref|YP_005408155.1| hypothetical protein SYNPCCN_0516 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384435745|ref|YP_005650469.1| hypothetical protein SYNGTS_0516 [Synechocystis sp. PCC 6803]
gi|451813843|ref|YP_007450295.1| hypothetical protein MYO_15210 [Synechocystis sp. PCC 6803]
gi|6136531|sp|P73069.1|YC48L_SYNY3 RecName: Full=Ycf48-like protein; Flags: Precursor
gi|1652167|dbj|BAA17091.1| slr2034 [Synechocystis sp. PCC 6803]
gi|339272777|dbj|BAK49264.1| conserved hypothetical protein Ycf48 [Synechocystis sp. PCC 6803]
gi|359270744|dbj|BAL28263.1| conserved hypothetical protein Ycf48 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359273915|dbj|BAL31433.1| conserved hypothetical protein Ycf48 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359277085|dbj|BAL34602.1| conserved hypothetical protein Ycf48 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407957567|dbj|BAM50807.1| hypothetical protein BEST7613_1876 [Synechocystis sp. PCC 6803]
gi|451779812|gb|AGF50781.1| hypothetical protein MYO_15210 [Synechocystis sp. PCC 6803]
Length = 342
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 32/233 (13%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
N G++ G LL T DGG+TWA IP +E+ ++ I+ + ++ +
Sbjct: 104 NEGWITGKPSILLHTTDGGQTWA--RIPLSEKLP-GAPYSIIALGPQTAEMITDLGAIYK 160
Query: 188 TSDAGESWERIP---------------------------LSSQLPGDMAFWQPHNRAVAR 220
T++ G++W+ + S+ PG W PHNR +R
Sbjct: 161 TTNGGKNWKALVEGAVGVARTIQRSTDGRYVAVSARGNFYSTWAPGQTE-WTPHNRNSSR 219
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG-FGILDVGYRSQDEAWA 279
R+Q MG+ DG LWLL RGG L S E + + Q +G +G+LD+ +R+ +E W
Sbjct: 220 RLQTMGYGKDGQLWLLARGGQLQFSTDPDAEEWSDVIAPQDKGSWGLLDLSFRTPEEVWV 279
Query: 280 AGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
AG SG LL + +GG+TW ++ ++I ANLY V F++ +KGFVLG DG+LL+Y
Sbjct: 280 AGASGNLLMSQDGGQTWAKDTGVEDIPANLYRVVFLSPEKGFVLGQDGILLKY 332
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 72/107 (67%), Gaps = 6/107 (5%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
A + W+ + + D DIAF +D NHG+L+GT++T+ ET DGG TW + I EE
Sbjct: 36 AFNPWQEIALETDS--TFADIAFT-EDPNHGWLVGTKETIFETTDGGDTWEQKLIDLGEE 92
Query: 160 EDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
+ F+++SF G EGWI GKP+ILLHT+D G++W RIPLS +LPG
Sbjct: 93 K---ASFSAVSFSGNEGWITGKPSILLHTTDGGQTWARIPLSEKLPG 136
>gi|157412658|ref|YP_001483524.1| Ycf48-like protein [Prochlorococcus marinus str. MIT 9215]
gi|157387233|gb|ABV49938.1| Uncharacterized photosystem II stability/assembly factor-like
protein [Prochlorococcus marinus str. MIT 9215]
Length = 337
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 158/341 (46%), Gaps = 84/341 (24%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
++F+++ L LS+ L S W+ I + LD+ F+ D N
Sbjct: 2 KKFLTRIPNLLLSVVLCFVLSSCSSTGVKMNESSPWK--MIQFEDQANALDVDFIDD--N 57
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH- 187
HGFL+G+ + ++E+ DGG+TW RS+ + EE N+R I FKG EGW++G+P++++H
Sbjct: 58 HGFLVGSNRLIMESTDGGETWEKRSLDISAEE--NFRLLDIDFKGSEGWLIGQPSLVMHT 115
Query: 188 -----------------------------------------TSDAGESWE---------- 196
TS++GE+WE
Sbjct: 116 VDEGKHWTRLSLGKLPGQPFLVTTINEGVAQLATTSAAIYETSNSGETWEAKVSDPSEQG 175
Query: 197 ------------RIPLSS------QLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
+ +SS L D W H RA ++R+Q++G+ +G LW+L R
Sbjct: 176 GIRDLRRTSSGDYVSVSSLGNFFSTLDSDSNTWIAHQRASSKRVQSIGFNPEGSLWMLSR 235
Query: 239 GGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
G + ++ E + + +P+ + G+ LD+G+ + WA GG+G L+ + + G+TW
Sbjct: 236 GAEIRFNEDNNDLENWSKPIIPILN-GYNYLDMGWDPNGDIWAGGGNGTLIVSKDQGETW 294
Query: 297 IREKAADNIAANLYSVKFINE-----KKGFVLGNDGVLLQY 332
++ A ++ N + F+++ +KGFVLG G +L++
Sbjct: 295 NKDPIASSLPTNYIKIVFLDKDSLDTQKGFVLGERGYILKW 335
>gi|298707281|emb|CBJ25908.1| photosystem II stability/assembly factor HCF136 [Ectocarpus
siliculosus]
Length = 424
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 145/340 (42%), Gaps = 107/340 (31%)
Query: 94 PAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHG----------------------- 130
PA +SAWE++ +PV VL DIAF P+ +HG
Sbjct: 88 PAAEAATVSAWEQIQLPV--ASVLYDIAFDPEHPDHGLVVGAQGTFLETFDGGYKWSVRT 145
Query: 131 ------------------------FLLGTRQTLLETKDGGKTW--APRSIPSAEEEDFNY 164
F++G LL +KD GKTW P S E
Sbjct: 146 FGNLDEEEEINYRFQKVSMYNDEIFIIGKPPILLHSKDAGKTWERVPLSPKLPGEPS--- 202
Query: 165 RFNSISFKGKEGWIVGKPAILLHTSDAGESW------------ERIPLS-----SQLPGD 207
N ++ G + + + +T +AG +W RI S S G
Sbjct: 203 --NIVALGGAKAEMTTSSGAIYYTKNAGMNWSAQVKETVDATLNRISSSGVSGASYFTGS 260
Query: 208 MA----------------------------FWQPHNRAVARRIQNMGW---RADGGLWLL 236
+ FW PHNR +RRIQNMG+ RA GLW+
Sbjct: 261 IIGTTRAEDGSYLAVSSRGNFYLTWSPGQDFWIPHNRGTSRRIQNMGFVRDRAAEGLWMT 320
Query: 237 VRGGGLFLSKG--TGITEE-FEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGG 293
+ GG + +S G ++ F E ++S G+GI+DV +++ +EAWA GG G L +T+GG
Sbjct: 321 LNGGAMQMSTTLPEGTSDPLFSETAIKSGGYGIIDVAWKNDNEAWAVGGGGSLWYSTDGG 380
Query: 294 KTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
+T+ A NI ANLY VKF KGF +G+DGVLL+Y+
Sbjct: 381 ETFKFSSGATNIGANLYDVKFFGGDKGFAIGSDGVLLKYI 420
>gi|148241310|ref|YP_001226467.1| Ycf48-like protein [Synechococcus sp. RCC307]
gi|226710561|sp|A5GQF5.1|YC48L_SYNR3 RecName: Full=Ycf48-like protein; Flags: Precursor
gi|147849620|emb|CAK27114.1| Uncharacterized protein related to plant photosystem II
stability/assembly factor [Synechococcus sp. RCC307]
Length = 331
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 155/342 (45%), Gaps = 92/342 (26%)
Query: 69 RQFVSQTATLSLSISL--AATTGLYEQPAKSEEALSAW--ERVYIPVDPGVVLLDIAFVP 124
R F+S + L+ L TT L A S W +++ I +P LD+AF
Sbjct: 6 RSFLSLLLCVGLTFGLGGCVTTSL------PMAAASPWNSQKLGIESNP----LDVAFTN 55
Query: 125 DDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI 184
+ +HGFL+G+ + ++ET DGG+TW R I +E N+R SI F G EGWI G+P +
Sbjct: 56 E--SHGFLVGSNRLVMETSDGGETWEEREIDLPADE--NFRLISIDFNGDEGWIAGQPGL 111
Query: 185 LLH-------------------------------------------TSDAGESWE----- 196
LLH +SDAG+SW+
Sbjct: 112 LLHSDDAGQSWSRLLLDTKLPGDPYLITALGSKKAELATNVGAIYQSSDAGKSWQAEVVD 171
Query: 197 --------------RIPLSSQL--------PGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
R S L PG + WQ H R ++R+Q+MG++ DG +W
Sbjct: 172 AAGSVRDLRRGDDGRYVSVSSLGNFFSTWDPG-QSNWQVHQRVSSQRLQSMGYQPDGQMW 230
Query: 235 LLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
++ RG L + G EE+ + +P+ + G+G LD+ + Q WA GG+G LL +++G
Sbjct: 231 MVTRGAQLRFNPEGGDYEEWSKPVIPI-TNGYGYLDMAWDPQGNIWAGGGNGTLLVSSDG 289
Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
GK W ++ +N F+ K F LG G +L+++G
Sbjct: 290 GKEWEKDPVGTATPSNFTRFVFLGGNKAFALGERGAILRWVG 331
>gi|218248865|ref|YP_002374236.1| hypothetical protein PCC8801_4148 [Cyanothece sp. PCC 8801]
gi|257061927|ref|YP_003139815.1| Ycf48-like protein [Cyanothece sp. PCC 8802]
gi|218169343|gb|ACK68080.1| putative photosystem II protein [Cyanothece sp. PCC 8801]
gi|256592093|gb|ACV02980.1| conserved hypothetical protein [Cyanothece sp. PCC 8802]
Length = 336
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 32/233 (13%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
N G++ G LL T DGG+ W+ IP +E+ + I+ + +V +
Sbjct: 101 NEGWVTGKPAILLHTDDGGQNWS--RIPLSEKLP-GAPYGIIALGSQTAEMVTDLGAIYK 157
Query: 188 TSDAGESWERIP---------------------------LSSQLPGDMAFWQPHNRAVAR 220
T++ G++W+ + S+ PG W PHNR +R
Sbjct: 158 TTNGGKTWQALVEGSVGVARNITRSSDGRYVAVSARGNFYSTWEPGQRE-WTPHNRNSSR 216
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV-PVQSRGFGILDVGYRSQDEAWA 279
R+Q MG+ GGLWLL RGG L S + + EE+ P S +G+LD+ YR+ DE W
Sbjct: 217 RLQKMGYSDKGGLWLLARGGQLQFSSADDLEDWQEEIYPEFSTSWGLLDLAYRTPDELWV 276
Query: 280 AGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
AGGSG LL + + G+TW +++A +++ +NLY + FI ++GFVLG +GVLL+Y
Sbjct: 277 AGGSGNLLFSPDQGETWEKDRAIESVPSNLYKIVFITPEQGFVLGQNGVLLKY 329
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
I ++ D+AF DLNHG+L+G++ L ET DGG TW R + ++E+ F
Sbjct: 40 ITLETESTFADVAFT-GDLNHGWLVGSQAALFETTDGGNTWEERKLDLSDEK---VSFTG 95
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
+SF EGW+ GKPAILLHT D G++W RIPLS +LPG
Sbjct: 96 VSFHENEGWVTGKPAILLHTDDGGQNWSRIPLSEKLPG 133
>gi|254432430|ref|ZP_05046133.1| photosystem II stability/assembly factor [Cyanobium sp. PCC 7001]
gi|197626883|gb|EDY39442.1| photosystem II stability/assembly factor [Cyanobium sp. PCC 7001]
Length = 355
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 140/322 (43%), Gaps = 86/322 (26%)
Query: 85 AATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKD 144
TTGL E A S WE V P+ L +AF D HGFL+G+ + +LET D
Sbjct: 48 CVTTGL------PEAAASPWEAV--PLATTANPLSVAF--SDARHGFLVGSNRLILETDD 97
Query: 145 GGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI-------------------- 184
GG W PR++ EE N+R SI F G EGWIVG+P +
Sbjct: 98 GGAHWEPRALDLPVEE--NFRLISIDFNGDEGWIVGQPGLLLHSTDAGRNWSRLFLDTKL 155
Query: 185 -----------------------LLHTSDAGESWE--------------RIP-------- 199
+ T D G SW+ R P
Sbjct: 156 PGEPYLVTALGRNSAELATNVGAIYDTRDGGNSWQARVGDAAGAVRELRRSPDGRYVSVS 215
Query: 200 -----LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEF 254
S+ PG WQ H R ++R+Q +G++ DG LW+L RG + E++
Sbjct: 216 SLGNFFSTWDPG-QDVWQVHQRVSSQRLQTIGFQPDGNLWMLARGAQIRFGSDAADPEQW 274
Query: 255 EE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSV 312
+ +P+ + G+G LD+ + + W GGSG LL + +GG++W ++ +N +
Sbjct: 275 SKPVIPI-TNGYGYLDMAWDPRGAIWTGGGSGTLLVSDDGGRSWQKDPVGAEQPSNFTRI 333
Query: 313 KFINEKKGFVLGNDGVLLQYLG 334
F + KGFVLG G LL+++G
Sbjct: 334 VFTPDGKGFVLGERGSLLRWVG 355
>gi|194476960|ref|YP_002049139.1| plant photosystem II stability/assembly factor- like protein
[Paulinella chromatophora]
gi|171191967|gb|ACB42929.1| plant photosystem II stability/assembly factor- like protein
[Paulinella chromatophora]
Length = 336
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 147/329 (44%), Gaps = 86/329 (26%)
Query: 77 TLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTR 136
LS+ + TTGL P S W+ V + + LD++F+ D HGFL+G+
Sbjct: 19 CLSIGLGGCITTGL---PVAVS---SPWKAVNLNTNASP--LDVSFI--DSEHGFLVGSN 68
Query: 137 QTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI------------ 184
+ +LET DGG TWA R++ EEE N+R S+SFK +EGWI G+P +
Sbjct: 69 RLILETNDGGVTWAKRALDLPEEE--NFRLISVSFKNEEGWIAGQPGLILHTINNGKDWT 126
Query: 185 -------------------------------LLHTSDAGESWE--------------RIP 199
+ T D G SW+ R P
Sbjct: 127 RLFLDTKLPGEPYLITSLGGNHAELATNVGAIYETRDGGSSWQASVNDAAGAVRDLRRGP 186
Query: 200 LSSQL-------------PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK 246
S + PG WQ H R ++R+Q++G++ D LW++ RG + +
Sbjct: 187 DGSYVSVSSLGNFFATWTPG-QDVWQVHQRVSSQRLQSIGYQPDANLWMITRGAQIRFNN 245
Query: 247 GTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADN 304
G E + +P+ + G+G LD+ + + W GG+G LLK+++ GKTW R+
Sbjct: 246 SPGDLENWSNPLIPI-TNGYGYLDMAWDPEGTIWIGGGNGTLLKSSDDGKTWERDPIGSG 304
Query: 305 IAANLYSVKFINEKKGFVLGNDGVLLQYL 333
A N + F + KGFVLG G LL ++
Sbjct: 305 EATNFTRILFPRKNKGFVLGERGHLLSWI 333
>gi|77024199|gb|ABA55570.1| chloroplast stability factor hcf136 [Pavlova lutheri]
Length = 201
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 103/162 (63%), Gaps = 13/162 (8%)
Query: 52 SSSSSSSSSSSSSSLNRRQFVSQTATLSLSISL-----AATTGLYEQPAKSEEALSAWER 106
S++ SS + ++ RR+ ++ T + +L++SL A+ GL+ AK SAW +
Sbjct: 30 SATGSSRIVAIAAEPGRRELLA-TGSAALAVSLLASPSPASAGLFGGSAKK----SAWTQ 84
Query: 107 VYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED-FNYR 165
V IPVD +L D+ F + HG+++G + T LETKDGGK W ++ + + ED NYR
Sbjct: 85 VDIPVDS--ILFDVEFDTNQPEHGWIVGNKGTFLETKDGGKRWEQKAFANLDTEDEINYR 142
Query: 166 FNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
F +SFK EGW++GKP+ILLHT D G SWERIPLS +LPG+
Sbjct: 143 FTKVSFKDGEGWVIGKPSILLHTKDGGTSWERIPLSPKLPGE 184
>gi|123965564|ref|YP_001010645.1| Ycf48-like protein [Prochlorococcus marinus str. MIT 9515]
gi|123199930|gb|ABM71538.1| Uncharacterized protein plant photosystem II stability/assembly
factor-like protein [Prochlorococcus marinus str. MIT
9515]
Length = 337
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 156/344 (45%), Gaps = 86/344 (25%)
Query: 69 RQFVSQTATLSLSISLA-ATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDL 127
+ F+ L LS++L T K E+ S WE + LD+ F+ D
Sbjct: 2 KNFLISIPNLILSLTLCLVLTSCSSNGVKMSES-SPWETIQFEDQSNA--LDVDFI--DN 56
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
NHGFL+G+ + ++E+KDGG++W RS+ EE N+R I FKG EGW++G+P++++H
Sbjct: 57 NHGFLVGSNRLIMESKDGGRSWEKRSLDIPAEE--NFRLLDIDFKGSEGWLIGQPSLVMH 114
Query: 188 ------------------------------------------TSDAGESWE--------- 196
TS++GE+WE
Sbjct: 115 TIDEGKNWTRLSLGKLPGQPFLVSTINEGVAQLATTSAAIYETSNSGETWEAKVSDPSEQ 174
Query: 197 -------------RIPLSS------QLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLV 237
+ +SS L W H RA ++R+Q++G+ G LW+L
Sbjct: 175 GGIRDLRRTSKGDYVSVSSLGNFFSTLDSGSDTWIAHQRASSKRVQSIGFNPSGNLWMLS 234
Query: 238 RGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
RG + ++ E++ + VP+ + G+ LD+G+ WA GG+G L+ + + GKT
Sbjct: 235 RGAEIRFNEDINDVEKWSKPIVPILN-GYNYLDMGWDPDGNIWAGGGNGTLIVSKDDGKT 293
Query: 296 WIREKAADNIAANLYSVKF-----INEKKGFVLGNDGVLLQYLG 334
W + A ++ N ++F ++ KGF+LG G +L++ G
Sbjct: 294 WNSDPIASDLPTNFIKIQFLAKDELDSPKGFILGERGYILKWNG 337
>gi|91069921|gb|ABE10850.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone ASNC2150]
Length = 337
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 153/343 (44%), Gaps = 84/343 (24%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
++F + L LSI + S W+ I + LD+ F+ D N
Sbjct: 2 KKFFTSIPNLLLSIVICFVLSSCSSTGVKMNESSPWKT--IQFEDQANALDVDFIDD--N 57
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH- 187
HGFL+G+ + ++E+ DGG+TW RS+ EE N+R I F G EGW++G+P++++H
Sbjct: 58 HGFLVGSNRLIMESTDGGETWEKRSLDITAEE--NFRLLDIDFNGSEGWLIGQPSLVMHT 115
Query: 188 -----------------------------------------TSDAGESWE---------- 196
TS++GE+WE
Sbjct: 116 VDEGQNWTRLSLGKLPGQPFLVTTIDDGVAQLATTSAAIYETSNSGETWEAKVSDPSEQG 175
Query: 197 ------------RIPLSS------QLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
+ +SS L D W H RA ++R+Q++G+ +G LW+L R
Sbjct: 176 GIRDLRRTSNGDYVSVSSLGNFFSTLDSDSNTWIAHQRASSKRVQSIGFNPEGSLWMLSR 235
Query: 239 GGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
G + ++ T E + + +P+ + G+ LD+G+ WA GG+G L+ + + GKTW
Sbjct: 236 GAEIRFNEDTNDLENWSKPIIPILN-GYNYLDMGWDPNGHIWAGGGNGTLIVSEDQGKTW 294
Query: 297 IREKAADNIAANLYSVKFINE-----KKGFVLGNDGVLLQYLG 334
+ A + N + F+++ +KGF+LG G +L++ G
Sbjct: 295 NSDPIATALPTNYIKIVFLDKDNLDNQKGFILGERGYVLKWNG 337
>gi|254526934|ref|ZP_05138986.1| photosystem II stability/assembly factor [Prochlorococcus marinus
str. MIT 9202]
gi|221538358|gb|EEE40811.1| photosystem II stability/assembly factor [Prochlorococcus marinus
str. MIT 9202]
Length = 337
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 141/292 (48%), Gaps = 82/292 (28%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+ F+ D NHGFL+G+ + ++E+ DGG+TW R++ EE N+R I FKG EGW
Sbjct: 49 LDVDFIDD--NHGFLVGSNRLIMESTDGGETWEKRTLDITAEE--NFRLLDIDFKGSEGW 104
Query: 178 IVGKPAILLH------------------------------------------TSDAGESW 195
++G+P++++H TS++GE+W
Sbjct: 105 LIGQPSLVMHTVDEGQHWTRLSLGKLPGQPFLVTTVDKGVAQLATTSAAIYETSNSGETW 164
Query: 196 E----------------------RIPLSS------QLPGDMAFWQPHNRAVARRIQNMGW 227
E + +SS L D W H RA ++R+Q++G+
Sbjct: 165 EAKVSDPSEQGGIRDLRRTNSGDYVSVSSLGNFFSTLASDSNTWIAHQRASSKRVQSIGF 224
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
+G LW+L RG + ++ E + + +P+ + G+ LD+G+ + WA GG+G
Sbjct: 225 NPEGSLWMLSRGAEIRFNEDNNDLENWSKPIIPILN-GYNYLDMGWDPNGDIWAGGGNGT 283
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINE-----KKGFVLGNDGVLLQY 332
L+ + + G+TW ++ A ++ N + F+++ +KGF+LG G +L++
Sbjct: 284 LIVSKDQGETWNKDPIASSLPTNYIKIVFLDKDSLDSQKGFILGERGYILKW 335
>gi|427420669|ref|ZP_18910852.1| putative photosystem II stability/assembly factor-like protein
[Leptolyngbya sp. PCC 7375]
gi|425756546|gb|EKU97400.1| putative photosystem II stability/assembly factor-like protein
[Leptolyngbya sp. PCC 7375]
Length = 349
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 146/299 (48%), Gaps = 52/299 (17%)
Query: 72 VSQTATLSLSISLAATTGLYEQPAKSEEALSAW-ERVYIPVDPGVVLLDIAFVPDDLNHG 130
V+ TA S + + T L+E E W +R D ++FV D+ G
Sbjct: 59 VAFTADASHGWLVGSRTSLFETNDGGE----TWGQRTLDLGDQRYTFTSVSFVGDE---G 111
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSD 190
++ G LL T DGGK+WA ++P + + + + KG AI T D
Sbjct: 112 WVSGLPSVLLHTTDGGKSWA--NVPLSNQLPGSPLMVTALAKGAVELATDVGAIY-RTED 168
Query: 191 AGESWERIP---------------------------LSSQLPGDMAFWQPHNRAVARRIQ 223
+G W + S+ PG + WQPHNR ++R+Q
Sbjct: 169 SGRHWSALVQAAVGVVRNMTRSEDGRYVAVSSRGNFYSTWEPGQDS-WQPHNRENSKRLQ 227
Query: 224 NMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----------FGILDVGYRS 273
NMG+ +DG LWL+ RGG + S+ E+ + V +S G +G LDVGYR+
Sbjct: 228 NMGFTSDGDLWLIARGGQMQFSQ---TDEDPDAVKYESWGEPLRPEIGTSWGFLDVGYRT 284
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+E W +GGSG LL + +GG+TW++++ A ++ +NLY VKF N+ +GF+LG G LL+Y
Sbjct: 285 DNELWVSGGSGTLLMSPDGGETWLKDEPAGDVPSNLYRVKFFNQDQGFILGQRGYLLRY 343
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 6/103 (5%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ + + D D+AF D +HG+L+G+R +L ET DGG+TW R++ ++
Sbjct: 45 WQMIALETD--ATFSDVAFTAD-ASHGWLVGSRTSLFETNDGGETWGQRTLDLGDQR--- 98
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
Y F S+SF G EGW+ G P++LLHT+D G+SW +PLS+QLPG
Sbjct: 99 YTFTSVSFVGDEGWVSGLPSVLLHTTDGGKSWANVPLSNQLPG 141
>gi|160331119|ref|XP_001712267.1| hfc136 [Hemiselmis andersenii]
gi|159765714|gb|ABW97942.1| hfc136 [Hemiselmis andersenii]
Length = 409
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 102/175 (58%), Gaps = 7/175 (4%)
Query: 38 FISTSRACSLPSSDSSSSSSSSSSSSSSLNR--RQFVSQTATLSLSISLAATTGL--YEQ 93
F++T + ++ + +S +++N F +Q I A +T L +
Sbjct: 15 FVNTKTNLFFNKNSNNKTKQNSKKWVANINEPFFNFKTQNRRKIFQILTAGSTLLTPFFS 74
Query: 94 PAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS 153
E+ WE+V IPVD VL D+ FV DD HG+L+G++ T LET D GKTW PR+
Sbjct: 75 AQSKEKKGKKWEQVEIPVD--TVLFDLDFVKDDPQHGWLVGSKGTFLETTDAGKTWIPRT 132
Query: 154 IPSAE-EEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
+ + +E+ YRF +ISF +GW++GKPAILLHT D G++W R+P+S +LPG+
Sbjct: 133 FANLDPDEELTYRFENISFFQNDGWVIGKPAILLHTKDGGKTWLRVPVSPKLPGE 187
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 86/137 (62%), Gaps = 10/137 (7%)
Query: 205 PGDMAFWQPHNRAVARRIQNMGWRADG---GLWLLVRGGGLFLSKGTGITE-----EFEE 256
PG FW P R +RRIQ+MG+ + GLW+ RGGGL +K + +F
Sbjct: 274 PG-QEFWIPRARDTSRRIQSMGFIENDLEQGLWMSTRGGGLSFTKSQPDFDSINNFDFSS 332
Query: 257 VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFIN 316
+++ G+GILDV ++++DE WAA G G+L + +GGK+W ++ D + +LY +KF N
Sbjct: 333 SDIKTGGYGILDVNFKNKDELWAACGGGILYSSIDGGKSW-KKDDEDKVIGSLYKIKFFN 391
Query: 317 EKKGFVLGNDGVLLQYL 333
K GFVLG++GVLL+Y+
Sbjct: 392 SKLGFVLGSNGVLLRYV 408
>gi|78778683|ref|YP_396795.1| Ycf48-like protein [Prochlorococcus marinus str. MIT 9312]
gi|108861973|sp|Q31CN6.1|YC48L_PROM9 RecName: Full=Ycf48-like protein; Flags: Precursor
gi|78712182|gb|ABB49359.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9312]
Length = 338
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 83/293 (28%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+ F+ D N+GFL+G+ + ++E+ DGG+TW R++ EE N+R I FKG+EGW
Sbjct: 49 LDVDFI--DNNNGFLVGSNRLIMESNDGGETWEKRNLDLPSEE--NFRLIDIDFKGQEGW 104
Query: 178 IVGKPAILLHT-------------------------------------------SDAGES 194
++G+P++++HT SD+GES
Sbjct: 105 LIGQPSLVMHTLDAGKNWTRLSLGNKLPGQPYLITTVDDGVAELATTAGAIYQTSDSGES 164
Query: 195 WERIPLS----------------------------SQLPGDMAFWQPHNRAVARRIQNMG 226
W L S L D W H RA ++R+Q++G
Sbjct: 165 WNAKVLDASGSGGVRDLRRTDKGDYVSVSSLGNFFSTLENDSNSWIAHQRASSKRVQSIG 224
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSG 284
+ +G LW+L RG + ++ T E + + +P+ + G+ LD+G+ + WA GG+G
Sbjct: 225 FNPEGSLWMLSRGAEIRFNEDTNDLENWSKPIIPILN-GYNYLDMGWDPNGDIWAGGGNG 283
Query: 285 VLLKTTNGGKTWIREKAADNIAANLYSVKFINE-----KKGFVLGNDGVLLQY 332
L+ + + GKTW + A + N + F+++ +KGFVLG G +L++
Sbjct: 284 TLIVSKDQGKTWNKYPIAAELPTNYIKIVFLDKEALDNQKGFVLGERGYILKW 336
>gi|282897136|ref|ZP_06305138.1| Glycosyl hydrolase, BNR repeat protein [Raphidiopsis brookii D9]
gi|281197788|gb|EFA72682.1| Glycosyl hydrolase, BNR repeat protein [Raphidiopsis brookii D9]
Length = 330
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 135/262 (51%), Gaps = 44/262 (16%)
Query: 104 WERVYIPVD-PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP----RSIPSAE 158
W+R+ + V+ P I+F + G+++G LL T DGGK+W+ + +P +
Sbjct: 64 WQRLELAVEEPKSRFDSISFAGQE---GWIVGEPSVLLHTTDGGKSWSSLPLSQKLPGSP 120
Query: 159 EEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESW--------------ER------I 198
N+ G I G T+D G +W ER I
Sbjct: 121 ILVKALGENAAEMATDVGAIYG-------TTDGGLNWKAQVETAVGVVRNLERSSDGKYI 173
Query: 199 PLSSQ-------LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
+S++ PG M W+PHNR +RR++NMG+ +G LWLL RGG + S
Sbjct: 174 AVSAKGSFYSVWEPG-MTAWEPHNRNSSRRLENMGFADNGQLWLLARGGQVQFSDPAKSD 232
Query: 252 EEFEEV-PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLY 310
E E P S +G+LD+ YR+ +E W GGSG LL++T+GG+TW +++ + +AANLY
Sbjct: 233 EWLEATYPELSTSWGLLDLAYRTPEEIWIGGGSGNLLRSTDGGQTWEKDRDVEEVAANLY 292
Query: 311 SVKFINEKKGFVLGNDGVLLQY 332
V F N +GF++G+ GVLL+Y
Sbjct: 293 KVVFFNPDQGFIIGDHGVLLKY 314
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 6/107 (5%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
+ + WE + +P + L DIAF D+ NHG+L+G+ TLLETKDGG W + E
Sbjct: 18 SFNPWEIISVPTEEK--LFDIAFT-DEPNHGYLVGSNATLLETKDGGNNWQRLELAVEEP 74
Query: 160 EDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
+ RF+SISF G+EGWIVG+P++LLHT+D G+SW +PLS +LPG
Sbjct: 75 KS---RFDSISFAGQEGWIVGEPSVLLHTTDGGKSWSSLPLSQKLPG 118
>gi|354553018|ref|ZP_08972325.1| Ycf48-like protein [Cyanothece sp. ATCC 51472]
gi|353554848|gb|EHC24237.1| Ycf48-like protein [Cyanothece sp. ATCC 51472]
Length = 330
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 152/340 (44%), Gaps = 97/340 (28%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QFV A IS + + P W+ + + D V DIAF DD +
Sbjct: 5 KQFVILIAVSLFCISCSQVPSTLDNP---------WKTLSLETD--VTFADIAFT-DDAD 52
Query: 129 HGFLLGTRQTLLE-------------------------------------------TKDG 145
HG+L+GT+ L E T+DG
Sbjct: 53 HGWLVGTKAALFETTDGGDTWEERKLDLGDEKVSFTAVSFNGDEGWITGKPAILLHTEDG 112
Query: 146 GKTWA----PRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESW------ 195
GK W+ +P A + ++ + +V + T + G++W
Sbjct: 113 GKNWSRIPLSEKLPGAPD-------GVVALGPETAEMVTNLGAIYKTDNGGKTWNALVEG 165
Query: 196 --------ERIP-------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
+R P S+ PG + W PHNR +RR+Q MG+ +GGLW
Sbjct: 166 AVGVARNIQRSPDGRYVAVSARGNFYSTWEPG-QSEWTPHNRNSSRRLQAMGYSEEGGLW 224
Query: 235 LLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
LL RGG L + + E++++V P S +G+LD+ YR+ +E W AGGS LL + +
Sbjct: 225 LLARGGQLQFTSPEDL-EDWQDVVYPEPSTSWGLLDLAYRTPEEIWVAGGSANLLVSPDN 283
Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
G+TW ++++ +++ +N Y + F+N++KGF+LG DG+LL+Y
Sbjct: 284 GETWKKDRSVESVPSNFYKIVFVNQEKGFILGQDGILLKY 323
>gi|172036223|ref|YP_001802724.1| Ycf48-like protein [Cyanothece sp. ATCC 51142]
gi|171697677|gb|ACB50658.1| probable photosystem II stability/assembly factor [Cyanothece sp.
ATCC 51142]
Length = 332
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 152/340 (44%), Gaps = 97/340 (28%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
+QFV A IS + + P W+ + + D V DIAF DD +
Sbjct: 7 KQFVILIAVSLFCISCSQVPSTLDNP---------WKTLSLETD--VTFADIAFT-DDAD 54
Query: 129 HGFLLGTRQTLLE-------------------------------------------TKDG 145
HG+L+GT+ L E T+DG
Sbjct: 55 HGWLVGTKAALFETTDGGDTWEERKLDLGDEKVSFTAVSFNGDEGWITGKPAILLHTEDG 114
Query: 146 GKTWA----PRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESW------ 195
GK W+ +P A + ++ + +V + T + G++W
Sbjct: 115 GKNWSRIPLSEKLPGAPD-------GVVALGPETAEMVTNLGAIYKTDNGGKTWNALVEG 167
Query: 196 --------ERIP-------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
+R P S+ PG + W PHNR +RR+Q MG+ +GGLW
Sbjct: 168 AVGVARNIQRSPDGRYVAVSARGNFYSTWEPG-QSEWTPHNRNSSRRLQAMGYSEEGGLW 226
Query: 235 LLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
LL RGG L + + E++++V P S +G+LD+ YR+ +E W AGGS LL + +
Sbjct: 227 LLARGGQLQFTSPEDL-EDWQDVVYPEPSTSWGLLDLAYRTPEEIWVAGGSANLLVSPDN 285
Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
G+TW ++++ +++ +N Y + F+N++KGF+LG DG+LL+Y
Sbjct: 286 GETWKKDRSVESVPSNFYKIVFVNQEKGFILGQDGILLKY 325
>gi|162606416|ref|XP_001713238.1| photosystem II stability/assembly factor HCF136 [Guillardia theta]
gi|75272890|sp|Q9AW48.1|P2SAF_GUITH RecName: Full=Photosystem II stability/assembly factor HCF136,
chloroplastic; Flags: Precursor
gi|12580704|emb|CAC27022.1| photosystem II stability/assembly factor HCF136 [Guillardia theta]
Length = 395
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 12/156 (7%)
Query: 53 SSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVD 112
S++ + S+ +NR +F++ +L T LY P + ++W +V +PVD
Sbjct: 29 SNNKFENHSNFFKINRTKFINYLLYPTL-------TSLY--PKFTHANTTSWTKVDLPVD 79
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAE-EEDFNYRFNSISF 171
VL DI F + HG+L+G++ T LET DGG TW PR+ + + +E+ YRF +ISF
Sbjct: 80 S--VLFDIEFTDPECKHGWLVGSKGTFLETDDGGNTWVPRTFANLDPDEELTYRFENISF 137
Query: 172 KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
+G+EGW++GKPAI+L+T D G++W R+P+S +LPG+
Sbjct: 138 EGQEGWVIGKPAIILYTKDGGKTWFRVPVSPKLPGE 173
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 8/131 (6%)
Query: 210 FWQPHNRAVARRIQNMGWRADG---GLWLLVRGGGLFLSKGTGITE-----EFEEVPVQS 261
FW P R +RRIQ+MG+ + G+W+ RGGGL +S E FE + +++
Sbjct: 264 FWIPRARETSRRIQSMGFIQNDNQKGIWMSTRGGGLSVSTKNFDFESISSFNFENIDIKT 323
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGF 321
G+GILD + + + W G G++ +T+ GK W + D ++ NLY +KF+N KGF
Sbjct: 324 GGYGILDAAFVNDKDIWIICGGGIVYNSTDKGKNWTKVDGIDKLSGNLYKIKFVNNNKGF 383
Query: 322 VLGNDGVLLQY 332
+LG++G+LL+Y
Sbjct: 384 ILGSNGLLLRY 394
>gi|159902863|ref|YP_001550207.1| hypothetical protein P9211_03221 [Prochlorococcus marinus str. MIT
9211]
gi|159888039|gb|ABX08253.1| Uncharacterized protein plant photosystem II stability/assembly
factor-like protein [Prochlorococcus marinus str. MIT
9211]
Length = 339
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 139/309 (44%), Gaps = 83/309 (26%)
Query: 102 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED 161
+ WE++ + D LDIAFV D NHGFL+G + + ET DGG TW R + EE
Sbjct: 36 TPWEQIQLASDDNP--LDIAFV--DKNHGFLVGANRLIRETSDGGATWQNRELDLGSEE- 90
Query: 162 FNYRFNSISFKGKEGWIV--------------------------GKPAIL---------- 185
N+R SI F G EGWIV G P ++
Sbjct: 91 -NFRLISIDFLGNEGWIVGQPGLVMHSNDGGQSWVRLVLGNKLPGDPYLITTLGNDSAEL 149
Query: 186 -------LHTSDAGESWE--------------------RIPLSS------QLPGDMAFWQ 212
T+D G +WE + +SS L WQ
Sbjct: 150 ATTAGAVYRTNDGGSNWESKVAEASGGARDLRRSNDGDYVSVSSLGNFFNTLEQGQGNWQ 209
Query: 213 PHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFE--EVPVQSRGFGILDVG 270
PH RA ++R+Q +G++ +G LW+L RG + + TG E + +VP+ + G+ LD+
Sbjct: 210 PHQRASSKRVQTLGYQPNGSLWMLSRGAEIRFNDSTGNYESWSKPKVPIVN-GYNYLDMA 268
Query: 271 YRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEK-----KGFVLGN 325
+ + WA GG+G LL + +GG+ W ++ + I N + FI+ + KGF +G
Sbjct: 269 WDPNGDIWAGGGNGTLLVSKDGGENWEKDPIGELIPTNFIRILFIDNEMSDQPKGFAIGE 328
Query: 326 DGVLLQYLG 334
G LL+++G
Sbjct: 329 RGHLLRWVG 337
>gi|126695658|ref|YP_001090544.1| Ycf48-like protein [Prochlorococcus marinus str. MIT 9301]
gi|126542701|gb|ABO16943.1| Uncharacterized photosystem II stability/assembly factor-like
protein [Prochlorococcus marinus str. MIT 9301]
Length = 338
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 154/342 (45%), Gaps = 85/342 (24%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
++ ++ L LSI L S W+ I + LD+ F+ D
Sbjct: 2 KKIITSIPNLLLSILLCFVLSSCSSTGVKMSDSSPWKT--IQFEDQANALDVDFI--DNK 57
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHT 188
+GFL+G+ + ++E+ DGG+TW R++ EE N+R I FKG EGW++G+P++++HT
Sbjct: 58 NGFLVGSNRLIMESNDGGETWEKRNLDLPSEE--NFRLLDIDFKGPEGWLIGQPSLVMHT 115
Query: 189 -------------------------------------------SDAGESW---------- 195
SD+GESW
Sbjct: 116 LDAGKNWTRLSLGNKLPGQPFLITTVDAGVAELATTAGAIYETSDSGESWNAKVVDASGS 175
Query: 196 ------------ERIPLSS------QLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLV 237
+ + +SS L D W H RA ++R+Q++G+ +G LW+L
Sbjct: 176 GGVRDLRRTSKGDYVSVSSLGNFFSTLENDSDAWIAHQRASSKRVQSIGFNPEGSLWMLS 235
Query: 238 RGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
RG + ++ T E + + +P+ + G+ LD+G+ + WA GG+G L+ + + GKT
Sbjct: 236 RGAEIRFNEDTNDLENWSKPIIPILN-GYNYLDMGWDPNGDIWAGGGNGTLIVSKDQGKT 294
Query: 296 WIREKAADNIAANLYSVKFINE-----KKGFVLGNDGVLLQY 332
W ++ A + N + F+++ +KGFVLG G +L++
Sbjct: 295 WNKDPIASELPTNYIKIVFLDKDALDNQKGFVLGERGYILKW 336
>gi|123967856|ref|YP_001008714.1| hypothetical protein A9601_03191 [Prochlorococcus marinus str.
AS9601]
gi|123197966|gb|ABM69607.1| Uncharacterized plant photosystem II stability/assembly factor-like
protein [Prochlorococcus marinus str. AS9601]
Length = 338
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 141/293 (48%), Gaps = 83/293 (28%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+ F+ D +GFL+G+ + ++E+ DGG+TW R++ EE N+R I FKG+EGW
Sbjct: 49 LDVDFI--DNKNGFLVGSNRLIMESNDGGETWEKRNLDLPSEE--NFRLLDIDFKGEEGW 104
Query: 178 IVGKPAILLHT-------------------------------------------SDAGES 194
++G+P++++HT SD+GES
Sbjct: 105 LIGQPSLVMHTLDAGKNWTRLSLGNKLPGQPFLITTVDAGVAELATTAGAIYETSDSGES 164
Query: 195 W----------------------ERIPLSS------QLPGDMAFWQPHNRAVARRIQNMG 226
W + + +SS L D W H RA ++R+Q++G
Sbjct: 165 WNAKVVDASGSGGVRDLRRTNKGDYVSVSSLGNFFSTLEKDSDAWIAHQRASSKRVQSIG 224
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSG 284
+ +G LW+L RG + ++ T E + + +P+ + G+ LD+G+ + WA GG+G
Sbjct: 225 FNPEGSLWMLSRGAEIRFNEDTNDLENWSKPIIPILN-GYNYLDMGWDPNGDIWAGGGNG 283
Query: 285 VLLKTTNGGKTWIREKAADNIAANLYSVKFINE-----KKGFVLGNDGVLLQY 332
L+ + + GKTW ++ A + N + F+++ +KGFVLG G +L++
Sbjct: 284 TLIVSKDQGKTWNKDPIASELPTNYIKIVFLDKEALDNQKGFVLGERGYILKW 336
>gi|33239779|ref|NP_874721.1| hypothetical protein Pro0327 [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|81664980|sp|Q7VDP1.1|YC48L_PROMA RecName: Full=Ycf48-like protein; Flags: Precursor
gi|33237305|gb|AAP99373.1| Photosystem II stability/assembly factor [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 339
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 146/331 (44%), Gaps = 86/331 (25%)
Query: 80 LSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTL 139
L + L+ P +S S WE + + D LDIAFV D NHGFL+G + +
Sbjct: 17 LGLGLSGCVTTTRIPVQSS---SPWEEIELANDDNP--LDIAFVDD--NHGFLVGANRLI 69
Query: 140 LETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI--------------- 184
LET DGG TW R + EE N+R SI FK EGWIVG+P +
Sbjct: 70 LETTDGGSTWEERDLDIPAEE--NFRLMSIDFKEDEGWIVGQPNLVLHSEDAGKNWTRLS 127
Query: 185 ----------------------------LLHTSDAGESWE-RIPLSSQLPGDM------- 208
+ T+D G++WE R+ +S D+
Sbjct: 128 LGSQLPGNPYLITTLDTSSAELATTAGAVYRTTDGGKNWEGRVAEASGGVRDLRRKEDGT 187
Query: 209 ------------------AFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
WQ H RA ++R+Q +G++ DG LW+L RG + L+ +G
Sbjct: 188 YVSVSSLGNFFVTLDKTDQAWQSHQRASSKRVQTLGFKPDGQLWMLSRGAEIRLNDASGD 247
Query: 251 TEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAAN 308
E + + +P+ + G+ +D+ + + WA GG+G LL + + G +W ++ N
Sbjct: 248 YESWSKPIIPLVN-GYNYMDMAWDPEGNIWAGGGNGTLLVSKDDGNSWEKDPIGYATPTN 306
Query: 309 LYSVKFI-----NEKKGFVLGNDGVLLQYLG 334
+ F+ N KGFVLG G +L+++G
Sbjct: 307 FIRIFFLKNPNGNPPKGFVLGERGHVLRWVG 337
>gi|428214432|ref|YP_007087576.1| putative photosystem II stability/assembly factor-like protein
[Oscillatoria acuminata PCC 6304]
gi|428002813|gb|AFY83656.1| putative photosystem II stability/assembly factor-like protein
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 119/236 (50%), Gaps = 34/236 (14%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
+ G+++G LL T D GK+W ++ ++ ++ K + +
Sbjct: 99 SEGWIVGEPSILLHTTDTGKSWEQIAL---SDKLPGSPLTIVALGSKSAEMTTNVGAIYR 155
Query: 188 TSDAGESWERIP---------------------------LSSQLPGDMAFWQPHNRAVAR 220
T D G++W+ + S PG A W PHNR +R
Sbjct: 156 TQDGGKTWKAMVEEAVGVIRNLDRSADGKYIAVSAKGNFFSMWEPGQSA-WVPHNRNSSR 214
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAW 278
RIQNMG+ ADG LW+L RGG L S E ++E P S +G+LD+ YR+ DE W
Sbjct: 215 RIQNMGFSADGRLWMLARGGQLQFSTPED-PENWDEAIYPEFSTSWGLLDLAYRTPDELW 273
Query: 279 AAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
GGSG LL++T+GG TW +++ +++ +N Y V F+NE+ GF +G G+LL+Y G
Sbjct: 274 IGGGSGNLLQSTDGGITWKKDREVEDVPSNFYKVLFLNEETGFAIGQRGILLKYQG 329
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 15/138 (10%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
++ V+ A + L +S + + P W V +P + L DI+F +DL
Sbjct: 9 KRIVALLAVVLLCVSCSKVPSVSYNP---------WNVVPLPTEAN--LNDISFT-NDLQ 56
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHT 188
HG+L+G+ TLLET DGG+TW + + +E R NS+SF G EGWIVG+P+ILLHT
Sbjct: 57 HGWLVGSEATLLETADGGETWELKQLGLDDERS---RLNSVSFAGSEGWIVGEPSILLHT 113
Query: 189 SDAGESWERIPLSSQLPG 206
+D G+SWE+I LS +LPG
Sbjct: 114 TDTGKSWEQIALSDKLPG 131
>gi|427709861|ref|YP_007052238.1| Ycf48-like protein [Nostoc sp. PCC 7107]
gi|427362366|gb|AFY45088.1| Ycf48-like protein [Nostoc sp. PCC 7107]
Length = 340
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 151/327 (46%), Gaps = 83/327 (25%)
Query: 78 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
++ I + G + P+ S + WE + +P + LLDIAF D HGFL+G+
Sbjct: 12 IAFLIVIVLCIGCSKVPSTS---FNPWEIIAVPSNEK--LLDIAFTQDS-QHGFLVGSNA 65
Query: 138 T-------------------------------------------LLETKDGGKTWAPRSI 154
T LL T D G++W+ I
Sbjct: 66 TLLETKDGGKNWQPLSLALDDSRYRFDSVSFSGEEGWIVGEPSLLLHTTDEGRSWS--RI 123
Query: 155 PSAEEEDFN-YRFNSISFKGKEGWIVGKPAILLHTSDAGESWE----------------- 196
P +E+ N +++ E + + T D G++W+
Sbjct: 124 PLSEKLPGNPITVHALGSDSAE--MATDVGAIYKTIDGGKNWKAQVEAAVGVVRNMQRSA 181
Query: 197 ---RIPLSSQ-------LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK 246
+ +S++ PG A W PHNR +RR++NMG+ +G LWLL RGG + S+
Sbjct: 182 DGKYVAVSAKGSFYSTWEPGQNA-WVPHNRNSSRRVENMGFNNNGQLWLLARGGQIQFSE 240
Query: 247 GTGITEEFEEV-PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNI 305
E E V P S +G+LD+ YR+ +E W GGSG LL++T+GGKTW +++ + +
Sbjct: 241 PNNAEEWQEAVYPELSTSWGLLDLAYRTPEELWIGGGSGNLLRSTDGGKTWEKDRDVEQV 300
Query: 306 AANLYSVKFINEKKGFVLGNDGVLLQY 332
AANLY + F+ +GF++G+ GVLL+Y
Sbjct: 301 AANLYKIVFLKPDQGFIIGDRGVLLKY 327
>gi|323450718|gb|EGB06598.1| hypothetical protein AURANDRAFT_29089 [Aureococcus anophagefferens]
Length = 387
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 75/108 (69%), Gaps = 5/108 (4%)
Query: 101 LSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS-AEE 159
+ WERV +PV L DIAF D HG+L+G + T LET DGGK W PR+ + EE
Sbjct: 63 IKNWERVSLPVS--TTLFDIAFDTD--THGYLVGAKGTFLETVDGGKNWKPRTFANLDEE 118
Query: 160 EDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
E+ YRF +SF+ EGW+VGKP ILLHT DAG+SWERIPLS +LPG+
Sbjct: 119 EEVGYRFEKVSFQDGEGWVVGKPPILLHTVDAGKSWERIPLSPKLPGE 166
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 6/129 (4%)
Query: 210 FWQPHNRAVARRIQNMGW---RADGGLWLLVRGGGLFLSKGTGITE---EFEEVPVQSRG 263
FW PHNR RRIQ MG+ + G+W+ + GG + L + + + F + + S G
Sbjct: 257 FWLPHNRGTPRRIQAMGFVEGDSSKGVWMTLNGGQMALGGKSAVDDAEPTFNVINLNSGG 316
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
+GILD +R EAWA GG + + +GGK + + +AD I NLY++KF GF L
Sbjct: 317 YGILDAAWRDSKEAWAVGGGNTMYVSKDGGKNFKFDDSADKIPGNLYAIKFFGPNTGFAL 376
Query: 324 GNDGVLLQY 332
G+DGVL+++
Sbjct: 377 GSDGVLMKF 385
>gi|218437811|ref|YP_002376140.1| Ycf48-like protein [Cyanothece sp. PCC 7424]
gi|218170539|gb|ACK69272.1| putative photosystem II protein [Cyanothece sp. PCC 7424]
Length = 334
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 121/234 (51%), Gaps = 34/234 (14%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
+ G++ G LL T+DGGKTW+ IP +E+ + I+ + +V +
Sbjct: 99 DEGWVTGKPAILLHTEDGGKTWS--RIPLSEKLP-GAPYGIIALAPQTAEMVTDLGGIYK 155
Query: 188 TSDAGESWERIP---------------------------LSSQLPGDMAFWQPHNRAVAR 220
T+D G +W+ + S+ PG W PHNR +R
Sbjct: 156 TTDGGRTWKALVEAAVGVARNIQRSEDGKYVAVSARGNFYSTWEPGQTE-WTPHNRNSSR 214
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAW 278
R+Q MG+ D LWL+ RGG L S E ++E P S +G+LD+ YR+ +E W
Sbjct: 215 RLQTMGYTEDDRLWLIARGGQLQFSAPED-PETWDESIYPEFSTSWGLLDLAYRTPEEMW 273
Query: 279 AAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
AGGSG LL + + GKTW +++ +++ ANLY + F+N +KGFVLG GVLL+Y
Sbjct: 274 VAGGSGNLLVSFDNGKTWEKDRQIEDVPANLYKIVFMNPEKGFVLGQKGVLLKY 327
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
I +D D+AF D NHG+++GT+ +L ET DGG TW R + +E+ F+
Sbjct: 38 INLDTESTFADVAFTSDP-NHGWIVGTQASLFETTDGGDTWQERKLDLGDEK---ISFDG 93
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
ISF G EGW+ GKPAILLHT D G++W RIPLS +LPG
Sbjct: 94 ISFNGDEGWVTGKPAILLHTEDGGKTWSRIPLSEKLPG 131
>gi|116075552|ref|ZP_01472811.1| photosystem II stability/assembly factor-like protein
[Synechococcus sp. RS9916]
gi|116066867|gb|EAU72622.1| photosystem II stability/assembly factor-like protein
[Synechococcus sp. RS9916]
Length = 334
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 152/331 (45%), Gaps = 87/331 (26%)
Query: 75 TATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLG 134
A L LS+ T L PA + S W+ I +D LD+AF D NHGFL+G
Sbjct: 18 VACLGLSLGGCVATRL---PAATT---SPWQA--IDLDTQSNPLDVAFT--DANHGFLVG 67
Query: 135 TRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV--------------- 179
+ + +LET DGG +W+ RS+ EEE N+R SI F G++GWI
Sbjct: 68 SNRMILETSDGGSSWSERSLDLPEEE--NFRLISIDFDGQDGWIAGQPGLLMHTTDGGNN 125
Query: 180 -----------GKPAIL-----------------LHTSDAGESWE--------------- 196
G+P ++ TSD G SW+
Sbjct: 126 WTRLFLDTKLPGEPYLITALGRDSAELATNVGAVYSTSDGGGSWDAKVTDAAGAVRDLRR 185
Query: 197 ----RIPLSSQL--------PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
R S L PG + WQ H R ++R+Q++G++ DG LW+L RG + L
Sbjct: 186 SDDGRYVSVSSLGNFYASWDPG-QSVWQVHQRVSSQRLQSIGYQPDGRLWMLARGAQIRL 244
Query: 245 SKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
+ E + + VP+ + G+G LD+ + WAAGG+G LL + +GG +W+++
Sbjct: 245 NDDASNNESWSKPIVPI-TNGYGYLDLAWTPDGSLWAAGGNGTLLVSNDGGDSWLKDPVG 303
Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
+N + + + KGF+LG G+LL+++
Sbjct: 304 SEQPSNFTRFELV-DGKGFLLGERGILLRWV 333
>gi|62319545|dbj|BAD94976.1| photosystem II stability/assembly factor HCF136 [Arabidopsis
thaliana]
Length = 71
Score = 124 bits (312), Expect = 5e-26, Method: Composition-based stats.
Identities = 57/71 (80%), Positives = 69/71 (97%)
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
FGILDVGYRS++EAWAAGGSG+LL+T NGGK+W R+KAADNIAANLY+VKF+++KKGFVL
Sbjct: 1 FGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVL 60
Query: 324 GNDGVLLQYLG 334
GNDGVLL+Y+G
Sbjct: 61 GNDGVLLRYVG 71
>gi|282901525|ref|ZP_06309447.1| Glycosyl hydrolase, BNR repeat protein [Cylindrospermopsis
raciborskii CS-505]
gi|281193568|gb|EFA68543.1| Glycosyl hydrolase, BNR repeat protein [Cylindrospermopsis
raciborskii CS-505]
Length = 340
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 133/262 (50%), Gaps = 44/262 (16%)
Query: 104 WERVYIPVD-PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP----RSIPSAE 158
W+R+ + V+ P I+F + G+++G LL T DGGK+W+ + +P +
Sbjct: 77 WQRLELAVEEPRSRFDSISFAGQE---GWIVGEPSVLLHTTDGGKSWSSLPLSQKLPGSP 133
Query: 159 EEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESW--------------ER------I 198
N+ G I G T+D G +W ER I
Sbjct: 134 ILVKALGENAAEMATDVGAIYG-------TTDGGLNWKAQVETAVGVVRNLERSSDGKYI 186
Query: 199 PLSSQ-------LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
+S++ PG M W+PHNR +RR++NMG+ +G LWLL RGG + S
Sbjct: 187 AVSAKGSFYSVWEPG-MTAWEPHNRNSSRRLENMGFADNGQLWLLARGGQVQFSDPAKSD 245
Query: 252 EEFE-EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLY 310
E E P S +G+LD+ YR+ E W GGSG LL++T+GG+TW +++ + +AANLY
Sbjct: 246 EWLEARYPELSTSWGLLDLAYRTPQEIWIGGGSGNLLRSTDGGQTWEKDREVEEVAANLY 305
Query: 311 SVKFINEKKGFVLGNDGVLLQY 332
V F N +GF++ + GVLL+Y
Sbjct: 306 KVVFFNPDQGFIIADHGVLLKY 327
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 74/107 (69%), Gaps = 6/107 (5%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
+ + WE + +P + L DIAF D+ NHG+L+G+ TLLETKDGGKTW + E
Sbjct: 31 SFNPWEIISVPTEEK--LFDIAFT-DEPNHGYLVGSNATLLETKDGGKTWQRLELAVEEP 87
Query: 160 EDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
RF+SISF G+EGWIVG+P++LLHT+D G+SW +PLS +LPG
Sbjct: 88 RS---RFDSISFAGQEGWIVGEPSVLLHTTDGGKSWSSLPLSQKLPG 131
>gi|428223781|ref|YP_007107878.1| Ycf48-like protein [Geitlerinema sp. PCC 7407]
gi|427983682|gb|AFY64826.1| Ycf48-like protein [Geitlerinema sp. PCC 7407]
Length = 338
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 133/308 (43%), Gaps = 83/308 (26%)
Query: 102 SAWERVYIPVD-PGVVLLDIAFVPDDLNHGFLLGTRQT---------------------- 138
S W V +P++ + LLDIAF + HG+L+G+R T
Sbjct: 34 SPWRSVSLPLEVEDITLLDIAFAESNSQHGWLVGSRSTLLETQDGGTTWDAKVLDLDEAK 93
Query: 139 ---------------------LLETKDGGKTWA----PRSIPSAEEEDFNYRFNSISFKG 173
LL T D GK+W+ +P A + NS
Sbjct: 94 YSLTSVSFAGKEGWVVGQPSLLLHTTDEGKSWSQVPLSEKLPGAPQVITALGPNSAELTT 153
Query: 174 KEGWIVGKPAILLHTSDAGESWERIP---------------------------LSSQLPG 206
G + T D G++W+ + S+ PG
Sbjct: 154 NVG-------AIYRTQDGGKNWKALVQEAVGVFRNISRSSDGKYVTVSARGNFYSTWEPG 206
Query: 207 DMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGI 266
W HNR +RR+QNMG+ ADG LWL+ RGG L ++G + P S +G+
Sbjct: 207 -ADRWVQHNRNSSRRLQNMGFTADGNLWLIARGGELQFTQGDYEAWDEPVNPEFSTSWGL 265
Query: 267 LDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGND 326
LD+ YR+ DE W GGS LL++ +GGKTW ++++ ++I +N Y V F + KGFVLG
Sbjct: 266 LDLAYRTPDELWVTGGSANLLRSVDGGKTWEKDRSVEDIPSNFYRVVFFDGDKGFVLGQR 325
Query: 327 GVLLQYLG 334
G LL+Y G
Sbjct: 326 GTLLKYEG 333
>gi|186685602|ref|YP_001868798.1| Ycf48-like protein [Nostoc punctiforme PCC 73102]
gi|186468054|gb|ACC83855.1| glycosyl hydrolase, BNR repeat-containing protein [Nostoc
punctiforme PCC 73102]
Length = 320
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 92/135 (68%), Gaps = 4/135 (2%)
Query: 201 SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV--P 258
S+ PG A W PHNR +RR++NMG+ +G LWLL RGG + S T EE++E P
Sbjct: 177 STWEPGQDA-WVPHNRNSSRRVENMGFGDNGQLWLLARGGQVQFSDPTK-PEEWQEAKYP 234
Query: 259 VQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEK 318
S +G+LD+ YR+ +E W GGSG LL++ +GGKTW +++ + +AANLY + F+ +
Sbjct: 235 ELSTSWGLLDLAYRTPEEIWVGGGSGNLLRSADGGKTWEKDRDIEEVAANLYKIVFLEPE 294
Query: 319 KGFVLGNDGVLLQYL 333
+GF++G+ GVLL+YL
Sbjct: 295 RGFIIGDRGVLLKYL 309
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 75/107 (70%), Gaps = 6/107 (5%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
+ + W+ + +P D LLDIAF ++ HG+L+G+ TLLET DGG +W P ++ E+
Sbjct: 12 SYNPWKVISVPTDSN--LLDIAFT-NNPEHGYLVGSNATLLETNDGGNSWKPITLQLDEQ 68
Query: 160 EDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
+ YRF+S+SF GKEGWI G+P +LLHT+D G SW RIPLS +LPG
Sbjct: 69 K---YRFDSVSFAGKEGWIAGEPGLLLHTTDEGASWSRIPLSEKLPG 112
>gi|399949767|gb|AFP65424.1| hfc136 [Chroomonas mesostigmatica CCMP1168]
Length = 405
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 76/105 (72%), Gaps = 3/105 (2%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE-EDF 162
WE++ IPVD VL D+ FV D HG+L+G++ T LET DGGK W PR+ + ++ E+
Sbjct: 80 WEQIEIPVDN--VLFDLDFVKDSPMHGWLVGSKGTFLETIDGGKNWIPRTFANLDQDEEL 137
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
YRF +ISF G +GW++GKP ILLHT D G++W R+P+S +LPG+
Sbjct: 138 TYRFENISFSGNDGWVIGKPVILLHTKDGGKTWLRVPVSPKLPGE 182
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 79/131 (60%), Gaps = 8/131 (6%)
Query: 210 FWQPHNRAVARRIQNMGW---RADGGLWLLVRGGGLFLSKGT---GITEEFEEVP--VQS 261
FW P R +RRIQ+MG+ + G+W+ RGGGL + FE P +++
Sbjct: 273 FWIPRARETSRRIQSMGFIENDLEKGIWMSTRGGGLSFTNTKPDFDSINNFEFFPSDIKT 332
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGF 321
G+GILDV +R+Q+E WAA G G+L + +G KTW RE I +LY +KF + GF
Sbjct: 333 GGYGILDVTFRNQNELWAACGGGILYSSFDGHKTWKREDEIGKIIGSLYKIKFFDSNSGF 392
Query: 322 VLGNDGVLLQY 332
VLG++GVLL+Y
Sbjct: 393 VLGSNGVLLRY 403
>gi|124025089|ref|YP_001014205.1| Ycf48-like protein [Prochlorococcus marinus str. NATL1A]
gi|123960157|gb|ABM74940.1| Uncharacterized protein plant photosystem II stability/assembly
factor-like protein [Prochlorococcus marinus str.
NATL1A]
Length = 338
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 133/295 (45%), Gaps = 83/295 (28%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+ FV D +GFL+GT + +LET DGG TW R++ E N+R S+ FKG+EGW
Sbjct: 49 LDVDFVDD--KNGFLVGTNRLILETNDGGITWKERNLDIPSEG--NFRLISVDFKGQEGW 104
Query: 178 IVGKPAILLHTS-------------------------------------------DAGES 194
I G+P ++LHT+ DAG +
Sbjct: 105 IAGQPGLILHTTDGGKNWTRLDLGNKLPGDPYLITTIDTDTAELATTAGAIYKTTDAGTN 164
Query: 195 WERIPLSSQLPGDM----------------------------AFWQPHNRAVARRIQNMG 226
WE I + + G + W PH RA ++R+Q++G
Sbjct: 165 WEAIVVDTSGSGGIRELRRTNNGGYISVSSLGNFFSVLRPGEEIWSPHQRASSKRVQSVG 224
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSG 284
+ +G LW+L RG + + + + + +P+ + G+ D+ + WAAGG+G
Sbjct: 225 EQPNGDLWMLSRGAEIRFNADPDDIDSWSKPIIPIVN-GYNYQDLVWDPSKSIWAAGGNG 283
Query: 285 VLLKTTNGGKTWIREKAADNIAANLYSVKFINE-----KKGFVLGNDGVLLQYLG 334
LL + + GKTW ++ +++ N + F+++ KGFV G G LL++ G
Sbjct: 284 TLLVSNDQGKTWEKDPVGESVPTNFIRILFLDDLNSDSPKGFVFGERGNLLRWQG 338
>gi|72383498|ref|YP_292853.1| Ycf48-like protein [Prochlorococcus marinus str. NATL2A]
gi|108861974|sp|Q46M02.1|YC48L_PROMT RecName: Full=Ycf48-like protein; Flags: Precursor
gi|72003348|gb|AAZ59150.1| photosystem II stability/assembly factor [Prochlorococcus marinus
str. NATL2A]
Length = 338
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 133/295 (45%), Gaps = 83/295 (28%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+ FV D +GFL+GT + +LET DGG TW R++ E N+R S+ FKG+EGW
Sbjct: 49 LDVDFVDD--KNGFLVGTNRLILETNDGGITWKERNLDIPSEG--NFRLISVDFKGQEGW 104
Query: 178 IVGKPAILLHTS-------------------------------------------DAGES 194
I G+P ++LHT+ DAG +
Sbjct: 105 IAGQPGLILHTTDGGKNWTRLDLGNKLPGDPYLITTIDTDIAELATTAGAIYKTTDAGTN 164
Query: 195 WERIPLSSQLPGDM----------------------------AFWQPHNRAVARRIQNMG 226
WE I + + G + W PH RA ++R+Q++G
Sbjct: 165 WEAIVVDTSGSGGIRELRRTNNGGYISVSSLGNFFSVLRPGEEIWSPHQRASSKRVQSVG 224
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSG 284
+ +G LW+L RG + + + + + +P+ + G+ D+ + WAAGG+G
Sbjct: 225 EQPNGDLWMLSRGAEIRFNADPDDIDSWSKPIIPIVN-GYNYQDLVWDPSKSIWAAGGNG 283
Query: 285 VLLKTTNGGKTWIREKAADNIAANLYSVKFINE-----KKGFVLGNDGVLLQYLG 334
LL + + GKTW ++ +++ N + F+++ KGFV G G LL++ G
Sbjct: 284 TLLVSNDEGKTWEKDPVGESVPTNFIRILFLDDLNSESPKGFVFGERGNLLRWQG 338
>gi|427730715|ref|YP_007076952.1| putative photosystem II stability/assembly factor-like protein
[Nostoc sp. PCC 7524]
gi|427366634|gb|AFY49355.1| putative photosystem II stability/assembly factor-like protein
[Nostoc sp. PCC 7524]
Length = 340
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 34/233 (14%)
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN-YRFNSISFKGKEGWIVGKPAILLH 187
G+++G LL T D G++W+ IP +E+ N ++++ E + +
Sbjct: 99 EGWIVGEPSLLLHTTDEGRSWS--RIPLSEKLPGNPISIHALAENQAE--MATDVGAIYT 154
Query: 188 TSDAGESWE--------------------RIPLSSQ-------LPGDMAFWQPHNRAVAR 220
T+D G++W+ + +S++ PG A W PHNR +R
Sbjct: 155 TTDGGKNWKAQVEAAVGVVRNLKRSADGKYVAVSAKGSFYSTWEPGQNA-WVPHNRNSSR 213
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFE-EVPVQSRGFGILDVGYRSQDEAWA 279
R++NMG+ DG LWLL RGG + S E E + P S +G+LD+ YR+ E W
Sbjct: 214 RLENMGFSQDGQLWLLARGGQVQFSDPAKPDEWQEAQTPELSTSWGLLDLAYRTPQEIWV 273
Query: 280 AGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
GGSG LL +T+GGKTW +++ + +AAN Y + F+ +GF++G+ GVLL+Y
Sbjct: 274 GGGSGNLLLSTDGGKTWEKDRDVEAVAANFYKIVFLQPDQGFIIGDRGVLLKY 326
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 74/104 (71%), Gaps = 6/104 (5%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W + +P + LLDIAF +D HGFL+G+ TLLE+ DGG TW P ++ ED
Sbjct: 34 WAVISLPTEAN--LLDIAFT-NDPQHGFLVGSNATLLESHDGGDTWQPLTLAL---EDDR 87
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
YRF+S+SF GKEGWIVG+P++LLHT+D G SW RIPLS +LPG+
Sbjct: 88 YRFDSVSFAGKEGWIVGEPSLLLHTTDEGRSWSRIPLSEKLPGN 131
>gi|427716996|ref|YP_007064990.1| Ycf48-like protein [Calothrix sp. PCC 7507]
gi|427349432|gb|AFY32156.1| Ycf48-like protein [Calothrix sp. PCC 7507]
Length = 340
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 135/260 (51%), Gaps = 38/260 (14%)
Query: 103 AWERVYIPVDPGVVLLD-IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED 161
+W+ + + +D D I+FV + G+++G LL T D G++W+ IP + +
Sbjct: 76 SWKPLKLELDDSRYRFDSISFVGQE---GWIVGEPSVLLHTTDEGRSWS--RIPLSSKLP 130
Query: 162 FN-YRFNSISFKGKEGWIVGKPAILLHTSDAGESWE--------------------RIPL 200
N + +++ E + + T+D G++W+ + +
Sbjct: 131 GNPIKIAALAANSAE--LATDVGAIYQTADGGKNWKAQVDAAVGVVRNLNRSADGKYVAV 188
Query: 201 SSQ-------LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEE 253
S++ PG A W PHNR +RR++N+G+ +G LWLL RGG + S T E
Sbjct: 189 SAKGSFYSVWEPGQNA-WTPHNRTSSRRLENVGFGENGQLWLLARGGQVQFSDPTKPDEW 247
Query: 254 FE-EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSV 312
E + P + +G+LD+ YR+ D+ W GGSG LL + +GGKTW +++ + +AAN Y V
Sbjct: 248 LEAQNPEMATSWGLLDLAYRTPDDIWIGGGSGNLLHSADGGKTWQKDRDVEEVAANFYKV 307
Query: 313 KFINEKKGFVLGNDGVLLQY 332
F+ +GF++G+ G LL+Y
Sbjct: 308 VFLKPDQGFIIGDRGTLLKY 327
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 9/130 (6%)
Query: 78 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+L I + G + P+ + W V +P D LLDIAF + HG+L+G+
Sbjct: 12 FALLIVVLVCIGCSKVPST---GYNPWAVVSVPTD--AKLLDIAFTGNP-QHGYLVGSNT 65
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
TLLET DGG +W P + E +D YRF+SISF G+EGWIVG+P++LLHT+D G SW R
Sbjct: 66 TLLETNDGGDSWKPLKL---ELDDSRYRFDSISFVGQEGWIVGEPSVLLHTTDEGRSWSR 122
Query: 198 IPLSSQLPGD 207
IPLSS+LPG+
Sbjct: 123 IPLSSKLPGN 132
>gi|449018241|dbj|BAM81643.1| photosystem II stability/assembly factor HCF136 [Cyanidioschyzon
merolae strain 10D]
Length = 437
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 78/107 (72%), Gaps = 3/107 (2%)
Query: 102 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAE-EE 160
+AW++V +P + VL DI F D NHG+L+GTR +LET+DGG+TW PR+ E EE
Sbjct: 107 AAWKQVPLPTES--VLFDIDFSQKDPNHGWLVGTRGLVLETRDGGETWEPRAFEDVEREE 164
Query: 161 DFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
+ NYRF+++SF G E W++GKP ++L ++D G++W RI LS +LPG+
Sbjct: 165 ELNYRFSNVSFSGDEAWVIGKPPVMLRSTDGGKNWSRILLSPKLPGE 211
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 123/251 (49%), Gaps = 23/251 (9%)
Query: 96 KSEEALSAWERVYI-PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI 154
+S + W R+ + P PG LL A P N ++ + + T++GG W
Sbjct: 191 RSTDGGKNWSRILLSPKLPGEPLLVTALGP---NCAEMVTSSGAIYVTENGGINWK---- 243
Query: 155 PSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP-----LSSQLPGDMA 209
+ E + N G G +I+ + D ++ IP + +PG
Sbjct: 244 -ALVRETIDATLNRTISSGITGASYFTGSIVSVSRDVHGNYIAIPSRGNFFLTWVPGS-D 301
Query: 210 FWQPHNRAVARRIQNMGW---RADGGLWLLVRGGGLFLSK-----GTGITEEFEEVPVQS 261
FW PH R+ +RRI +G+ A G+W +RGGGL +K + T F+ V ++
Sbjct: 302 FWTPHARSTSRRISAIGFIQNDATKGIWETIRGGGLGFTKPNVNLNSTETIAFDMVDSKT 361
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGF 321
G+GILDV ++ WAA G G + ++ +GGKTW R+ + ANLY +KF ++GF
Sbjct: 362 GGYGILDVAFQDDRHVWAAVGGGSMYRSDDGGKTWRRDPLVSKVGANLYKIKFFGSQRGF 421
Query: 322 VLGNDGVLLQY 332
VLG DGVLL++
Sbjct: 422 VLGADGVLLKF 432
>gi|219122857|ref|XP_002181754.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407030|gb|EEC46968.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 408
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 91/147 (61%), Gaps = 6/147 (4%)
Query: 62 SSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIA 121
S SS RR FV QT + + +S+A+ +GL P + W +V +P + L DI
Sbjct: 43 SESSGARRAFV-QTTSAAAVVSVASASGLVTPPPAEAASSQLWSKVPLPFED--TLFDID 99
Query: 122 FVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAE-EEDFNYRFNSISFKGKEGWIVG 180
F D HG+L+G R ET DGGKTW RS + + EE+ YRF +SFK EGW++G
Sbjct: 100 F--DSPTHGYLVGARGAFAETNDGGKTWEARSFSNLDPEEEVTYRFQVLSFKDGEGWVLG 157
Query: 181 KPAILLHTSDAGESWERIPLSSQLPGD 207
KP +LLHT D+G++WERIPLS +LPG+
Sbjct: 158 KPTLLLHTKDSGKTWERIPLSPKLPGE 184
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 116/258 (44%), Gaps = 53/258 (20%)
Query: 129 HGFLLGTRQTLLETKDGGKTWA-----------PRSI----PSAEE-------------- 159
G++LG LL TKD GKTW P +I PS E
Sbjct: 152 EGWVLGKPTLLLHTKDSGKTWERIPLSPKLPGEPTAIVALGPSRAEMTTSSGAVYVTDNA 211
Query: 160 ---------EDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQL-----P 205
E + N IS G G +I+ D ++ + P
Sbjct: 212 GRNWKAQVKETIDATLNRISSSGVSGASYFTGSIINQVRDDLGAYLAVSSRGNFFLTWEP 271
Query: 206 GDMAFWQPHNRAVARRIQNMGW---RADGGLWLLVRGGGLFLSKG----TGITEEFEEVP 258
G FW PHNR RRIQNMG+ GLW+ + GG LF+S T +F+E
Sbjct: 272 G-QDFWIPHNRGTPRRIQNMGFVEGDIKKGLWMTLNGGKLFISSEEPDLTKDVFDFQEAD 330
Query: 259 VQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE- 317
+++ G+GI DV +R+ E WA GGS + + +GGK + +K+ + NLY+VKF +
Sbjct: 331 IKTGGYGITDVAWRNPKEVWAVGGSNTMYVSFDGGKKFQFDKSGNAYPGNLYNVKFFPQY 390
Query: 318 -KKGFVLGNDGVLLQYLG 334
G+ LG++G+LL+Y G
Sbjct: 391 GNAGWALGSNGLLLRYTG 408
>gi|75908077|ref|YP_322373.1| Ycf48-like protein [Anabaena variabilis ATCC 29413]
gi|108861972|sp|Q3MC08.1|YC48L_ANAVT RecName: Full=Ycf48-like protein; Flags: Precursor
gi|75701802|gb|ABA21478.1| Glycosyl hydrolase, BNR repeat protein [Anabaena variabilis ATCC
29413]
Length = 339
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 85/129 (65%), Gaps = 3/129 (2%)
Query: 205 PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFE-EVPVQSRG 263
PG A W PHNR +RR++NMG+ DG LWLL RGG + S T E + + P +
Sbjct: 199 PGQNA-WVPHNRNSSRRVENMGFSQDG-LWLLARGGQVQFSDPTKPDEWLDAQTPELATS 256
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
+G+LD+ YR+ +E W GGSG LL +T+GGKTW +++ + +AAN Y V F+ +GFV+
Sbjct: 257 WGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVI 316
Query: 324 GNDGVLLQY 332
G+ GVLL+Y
Sbjct: 317 GDRGVLLKY 325
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 88/149 (59%), Gaps = 9/149 (6%)
Query: 78 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+L + L G + P+ S + W V +P + LLDIAF ++ HGFL+G+
Sbjct: 11 FALLVVLLLCIGCSKVPSTS---YNPWAVVSLPTE--AKLLDIAFT-ENPQHGFLVGSNA 64
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
TLLET DGG W P ++ +D YRF+S+SF GKEGWI G+P++LLHT+D G SW R
Sbjct: 65 TLLETNDGGNNWQPLNLAL---DDDRYRFDSVSFAGKEGWIAGEPSLLLHTTDEGRSWSR 121
Query: 198 IPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
IPLS +LPG+ Q +A ++G
Sbjct: 122 IPLSEKLPGNPIAIQALGTDIAEMATDVG 150
>gi|17231336|ref|NP_487884.1| hypothetical protein alr3844 [Nostoc sp. PCC 7120]
gi|81770457|sp|Q8YQI3.1|YC48L_ANASP RecName: Full=Ycf48-like protein; Flags: Precursor
gi|17132978|dbj|BAB75543.1| alr3844 [Nostoc sp. PCC 7120]
Length = 339
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 106/200 (53%), Gaps = 32/200 (16%)
Query: 139 LLETKDGGKTW-----APRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGE 193
+ +T DGGK W A + E + ++ ++S KG T +AG+
Sbjct: 152 IYKTTDGGKNWKAQVEAAVGVVRNLERSVDGKYVAVSAKGS----------FYSTWEAGQ 201
Query: 194 SWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEE 253
+ W PHNR +RR++NMG+ DG LWLL RGG + S E
Sbjct: 202 N---------------AWVPHNRNSSRRVENMGFSQDG-LWLLARGGQVQFSDPANPDEW 245
Query: 254 FE-EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSV 312
+ E P + +G+LD+ YR+ +E W GGSG LL +T+GGKTW +++ + +AAN Y V
Sbjct: 246 LDAETPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKV 305
Query: 313 KFINEKKGFVLGNDGVLLQY 332
F+ +GFV+G+ GVLL+Y
Sbjct: 306 VFLKPDQGFVIGDRGVLLKY 325
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 89/149 (59%), Gaps = 9/149 (6%)
Query: 78 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+L + L G + P+ S + W V +P + LLDIAF ++ HGFL+G+
Sbjct: 11 FTLLVVLLLCIGCSKVPSTS---YNPWAVVSLPTE--AKLLDIAFT-ENPQHGFLVGSSA 64
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
TLLET DGG W P ++ +D YRF+S+SF GKEGWIVG+P++LLHT+D G SW R
Sbjct: 65 TLLETNDGGNNWQPLNLAL---DDDRYRFDSVSFAGKEGWIVGEPSLLLHTTDEGRSWSR 121
Query: 198 IPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
IPLS +LPG+ Q +A ++G
Sbjct: 122 IPLSEKLPGNPIAIQALGTDIAEMATDVG 150
>gi|352095158|ref|ZP_08956261.1| Ycf48-like protein [Synechococcus sp. WH 8016]
gi|351679169|gb|EHA62311.1| Ycf48-like protein [Synechococcus sp. WH 8016]
Length = 336
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 129/290 (44%), Gaps = 81/290 (27%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+AF D HGFL+G+ + +LET DGG TW RS+ +EE N+R SI+F G +GW
Sbjct: 49 LDVAFTNAD--HGFLVGSNRLILETNDGGATWNERSLDLPQEE--NFRLISIAFDGDDGW 104
Query: 178 IVGKPAILLH-------------------------------------------TSDAGES 194
I G+P +L+H TSD G S
Sbjct: 105 IAGQPGLLMHTTDGGNNWTRLFLDTKLPGEPYLITALGPNTAELATNVGAVYRTSDGGGS 164
Query: 195 WE--------------RIPLSSQL-------------PGDMAFWQPHNRAVARRIQNMGW 227
WE R P + PG WQ H R ++R+Q++G+
Sbjct: 165 WEAEVSDAAGAIRDLRRGPEGGYVSVSSLGNFYAGWAPG-QDVWQVHQRVSSQRLQSIGY 223
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
+ DG LW++ RG + ++ E + + +P+ + G+G +D+ + WA GG+G
Sbjct: 224 QPDGKLWMVARGAQIRFNEDDVDNENWSKAIIPI-TNGYGYMDMAWSDDGAIWAGGGNGT 282
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFI---NEKKGFVLGNDGVLLQY 332
LL + + G +W R+ A+ N F N+ F+LG G LL++
Sbjct: 283 LLVSRDNGDSWERDPEANQTPTNFNRFVFDHSGNQLHAFLLGERGNLLRW 332
>gi|452820408|gb|EME27451.1| photosystem II stability/assembly factor HCF136 [Galdieria
sulphuraria]
Length = 438
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 86/139 (61%), Gaps = 7/139 (5%)
Query: 70 QFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNH 129
Q V+ + S+ S+ A G P+ S EA AW+ + +P +L D+ D +H
Sbjct: 82 QVVAALSLQSIGSSVEAAMGSTVDPSSSHEA--AWKPLSVPTQS--LLFDVDM--DSKSH 135
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAE-EEDFNYRFNSISFKGKEGWIVGKPAILLHT 188
G+L+G T+LET DGG+ W PR+ +E+ NYRF SIS G EGWIVGKP ILLHT
Sbjct: 136 GWLIGANGTILETHDGGEHWEPRTFDFLRMDEEINYRFESISCYGNEGWIVGKPPILLHT 195
Query: 189 SDAGESWERIPLSSQLPGD 207
+ G+ WERIPLSS+LPG+
Sbjct: 196 QNGGKDWERIPLSSKLPGE 214
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 119/249 (47%), Gaps = 30/249 (12%)
Query: 104 WERVYIPVD---PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE 160
WER IP+ PG +L A P N L T + T +GGK W + +E
Sbjct: 202 WER--IPLSSKLPGEPVLITALGP---NRAELATTAGAIYTTDNGGKNWK-----ALVKE 251
Query: 161 DFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQL-----PGDMAFWQPHN 215
+ N + G G ++ T D + I PG +W PH
Sbjct: 252 TIDATLNRTTSSGVTGASYYTGTVISITRDCNGYYLAISSRGNFYVTWHPGQ-EYWTPHP 310
Query: 216 RAVARRIQNMGWRADG---GLWLLVRGGGLFLSK-----GTGITEEFEEVPVQSRGFGIL 267
R +RRIQ+MG+ + GLW+ GG L S T + F+ V +++ G+GIL
Sbjct: 311 RDSSRRIQSMGFVQNDIHKGLWMANNGGFLGFSPPNPSLDTVSSIPFQRVDIRTGGYGIL 370
Query: 268 DVGYRSQ--DEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
DV + Q +E WA+ GSG+L ++ +GGK W ++ D++ + LY +KF+ E GF+LG
Sbjct: 371 DVAFHQQKRNEVWASVGSGILYRSFDGGKHWEKDPWLDHLGSVLYRIKFV-ENSGFILGA 429
Query: 326 DGVLLQYLG 334
G LL+Y G
Sbjct: 430 KGTLLRYNG 438
>gi|116071578|ref|ZP_01468846.1| photosystem II stability/assembly factor-like protein
[Synechococcus sp. BL107]
gi|116065201|gb|EAU70959.1| photosystem II stability/assembly factor-like protein
[Synechococcus sp. BL107]
Length = 333
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 134/288 (46%), Gaps = 77/288 (26%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD++F D NHGFL+G+ + + ET DGG W RS+ +EE N+R SI F+G+EGW
Sbjct: 49 LDVSFT--DPNHGFLVGSNRMIRETDDGGSHWNDRSLDLPDEE--NFRLISIDFEGQEGW 104
Query: 178 IVGKPAILLH-------------------------------------------TSDAGES 194
I G+P +L+H T+D GES
Sbjct: 105 IAGQPGLLMHSTDGGQNWTRLFLDTKLPGEPYLITALGKDTAELATNVGAVYKTNDGGES 164
Query: 195 WERIPLS-------------------SQLPGDMAFWQP-------HNRAVARRIQNMGWR 228
WE S L A W+P H R ++R+Q++G++
Sbjct: 165 WEASVTDAAGAVRDLRRSSNGSYVSVSGLGNFYATWEPGETVWKVHQRVSSQRLQSIGYQ 224
Query: 229 ADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
DG LW++ RG + L+ G G EE+ + +P+ + G+G +D+ + WA GG+G L
Sbjct: 225 PDGNLWMVARGAQIRLNDGDGNVEEWSKAIIPI-TNGYGYMDLAWDDDGGIWAGGGNGTL 283
Query: 287 LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
L + +GG +W + D +N F ++ FVLG G LL+++G
Sbjct: 284 LVSHDGGDSWETDPVGDQQPSNFTRFVF-DDDHAFVLGERGNLLRWVG 330
>gi|33864161|ref|NP_895721.1| hypothetical protein PMT1895 [Prochlorococcus marinus str. MIT
9313]
gi|81576852|sp|Q7V4Q3.1|YC48L_PROMM RecName: Full=Ycf48-like protein; Flags: Precursor
gi|33635745|emb|CAE22070.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 335
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 137/291 (47%), Gaps = 78/291 (26%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LDI+F D NHGF++GT + ++E+ DGG +W RS+ EED N+R SI F G EGW
Sbjct: 49 LDISF--SDANHGFVVGTNRLIMESNDGGVSWKKRSLDL--EEDENFRLISIDFNGNEGW 104
Query: 178 IVGKPAILLHTSDAGESWERIPLSSQLPGD---MAFWQPHNRAVARRIQNMGWRADGGL- 233
I G+P +++H++DAG++W R+ L ++LPGD + P+N +A + +DGG
Sbjct: 105 IAGQPGLVMHSTDAGKNWSRLKLENKLPGDPYLITNLGPNNAELATNAGAIYRTSDGGTT 164
Query: 234 ----------------------WLLVRGGGLFLSK---GTGITEEFEEVP---VQSRGF- 264
++ V G F S G + + E V VQS G+
Sbjct: 165 WKATVSEAAGAVRDLRRSAAGNYVSVSSLGNFFSTLDLGQDVWQNHERVSSKRVQSLGYQ 224
Query: 265 --------------------GILDV----------GYRSQDEAW-------AAGGSGVLL 287
G +D GY D +W AAGG+G L+
Sbjct: 225 PNGELWMVARGAEIRLNDQPGNVDSWGKAMIPITNGYNYLDLSWDPNGGIWAAGGNGTLI 284
Query: 288 KTTNGGKTWIREKAADNIAANLYSVKFI----NEKKGFVLGNDGVLLQYLG 334
KT + GK+W + D +NL + F ++ KGFVLG G LL+++G
Sbjct: 285 KTLDDGKSWQIDPMGDTQPSNLIRILFDTSSESQAKGFVLGERGHLLRWVG 335
>gi|224012791|ref|XP_002295048.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969487|gb|EED87828.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 406
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 96/160 (60%), Gaps = 5/160 (3%)
Query: 49 SSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVY 108
SS + + +SS S S+S +RR FV+++AT + + +LA S A W +V
Sbjct: 23 SSCTVTRTSSLSMSASEEDRRSFVTKSATTAAAATLATLGSASAPLPASAAASRQWRQVK 82
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAE-EEDFNYRFN 167
+P + V +D D HG+++G R + ET DGG TW PRS + + EE+ YRF
Sbjct: 83 VPFEDTVYDIDF----DSPTHGYIVGARGSFAETNDGGATWEPRSFSNLDAEEEITYRFQ 138
Query: 168 SISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
+SF EGW++GKP +LLHT D G++WERIPLS +LPG+
Sbjct: 139 VVSFNNGEGWVLGKPTLLLHTKDGGKTWERIPLSPKLPGE 178
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 125/261 (47%), Gaps = 58/261 (22%)
Query: 129 HGFLLGTRQTLLETKDGGKTW--------------------------------------A 150
G++LG LL TKDGGKTW A
Sbjct: 146 EGWVLGKPTLLLHTKDGGKTWERIPLSPKLPGEPTGILATGPNSAEMITSSGAVYTTENA 205
Query: 151 PRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQ------- 203
R+ + +E + N IS G G +I+ D+ ++ I +SS+
Sbjct: 206 GRNWKAQVKETIDATLNRISSSGVSGASYFTGSIVNEQRDSKGAY--IAVSSRGNFFLTW 263
Query: 204 LPGDMAFWQPHNRAVARRIQNMGW-RAD--GGLWLLVRGGGLFLSKGTGITEEFEEVP-- 258
PG FW PHNR RRIQNMG+ R D GLW+ + GG L +S + EE P
Sbjct: 264 EPG-QDFWIPHNRGTPRRIQNMGFVRGDIKNGLWMTLNGGKLLVSSSDSVDLSSEEFPFD 322
Query: 259 ---VQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI 315
+++ G+G+ DV +R +E WA GGS + + + G+ ++ +K+A++I NLY+VKF
Sbjct: 323 EANIKTGGYGLTDVAWRDDNEVWAVGGSNTMYVSKDNGRNFVFDKSANDIPGNLYNVKFF 382
Query: 316 NE--KKGFVLGNDGVLLQYLG 334
E G+ LG++G+LL+Y+G
Sbjct: 383 REFGNAGWALGSNGLLLKYVG 403
>gi|113954859|ref|YP_729476.1| hypothetical protein sync_0240 [Synechococcus sp. CC9311]
gi|113882210|gb|ABI47168.1| photosystem II stability/assembly factor HCF136 [Synechococcus sp.
CC9311]
Length = 336
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 127/290 (43%), Gaps = 81/290 (27%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+AF D HGFL+G+ + +LET DGG W RS+ EEE N+R SI+F G +GW
Sbjct: 49 LDVAFTSAD--HGFLVGSNRLILETNDGGANWNERSLDLPEEE--NFRLISIAFDGDDGW 104
Query: 178 IVGKPAILLH-------------------------------------------TSDAGES 194
I G+P +L+H TSD G S
Sbjct: 105 IAGQPGLLMHTTDGGNNWTRLFLDTKLPGEPYLITALGPNTAELATNVGAVYRTSDGGGS 164
Query: 195 WE--------------RIPLSSQL-------------PGDMAFWQPHNRAVARRIQNMGW 227
WE R P + PG WQ H R ++R+Q++G+
Sbjct: 165 WEAEVSDAAGAIRDLRRGPEGGYVSVSSLGNFYAGWAPG-QDVWQVHQRVSSQRLQSIGY 223
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
+ DG LW++ RG + ++ E + + +P+ + G+G +D+ + WA GG+G
Sbjct: 224 QPDGKLWMVARGAQIRFNEDDVDNENWGKAIIPI-TNGYGYMDMAWSDDGAIWAGGGNGT 282
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFI---NEKKGFVLGNDGVLLQY 332
LL + + G +W R+ A+ N F N F+LG G LL++
Sbjct: 283 LLVSRDNGDSWERDPEANQTPTNFNRFVFDHSGNRLHAFLLGERGNLLRW 332
>gi|158335780|ref|YP_001516953.1| Ycf48-like protein [Acaryochloris marina MBIC11017]
gi|158306021|gb|ABW27638.1| photosystem II stability/assembly factor Ycf48-like protein
precursor [Acaryochloris marina MBIC11017]
Length = 337
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 34/236 (14%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
+ G+++G LL T DGGK+W+ S+ S + Y+ ++ K E ++ +
Sbjct: 99 DEGWIVGEPSILLHTTDGGKSWSRVSL-STQLPGTPYQVTALGPKSVE--MITDLGAIYR 155
Query: 188 TSDAGESW--------------------ERIPLSSQ-------LPGDMAFWQPHNRAVAR 220
T D + W + + +SS+ PG+ + WQ H+R AR
Sbjct: 156 TQDEAQHWTALVEEATGATRNINRSEDGKYVAISSRGSFYTTFYPGETS-WQSHDRNGAR 214
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEF---EEVPVQSRGFGILDVGYRSQDEA 277
RIQ MG+ +G W+L +GG + S G ++ E + G+LD+ YR+ DE
Sbjct: 215 RIQTMGFDPNGNPWILNKGGQVQFSNGFLEDGDYAWDEAFTPGTNKIGLLDLAYRTPDEV 274
Query: 278 WAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
W +GGSG LL + +GG+TW ++ +++ +NLY + F++ +GF++G G LL+++
Sbjct: 275 WISGGSGTLLCSLDGGQTWQKDSTVEDVPSNLYKIIFVSSDQGFIIGQSGTLLRFI 330
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 72/104 (69%), Gaps = 7/104 (6%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
+WE V +P D V LD+ F D HG+L+GT LLET DGGK+W R + D
Sbjct: 35 SWETVALPTDSTV--LDVDFASPD--HGWLVGTSSALLETFDGGKSWEQRPLALG---DL 87
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
+YRF+SISF G EGWIVG+P+ILLHT+D G+SW R+ LS+QLPG
Sbjct: 88 DYRFSSISFSGDEGWIVGEPSILLHTTDGGKSWSRVSLSTQLPG 131
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW-IREKAADNIAANLYSVKFINEKKGFVLG 324
+LDV + S D W G S LL+T +GGK+W R A ++ S+ F + +G+++G
Sbjct: 47 VLDVDFASPDHGWLVGTSSALLETFDGGKSWEQRPLALGDLDYRFSSISFSGD-EGWIVG 105
Query: 325 NDGVLLQ 331
+LL
Sbjct: 106 EPSILLH 112
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 98 EEALSAWERVYIPVDPGVVLLDIAF-VPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
E+ AW+ + P + LLD+A+ PD++ ++ G TLL + DGG+TW S +
Sbjct: 244 EDGDYAWDEAFTPGTNKIGLLDLAYRTPDEV---WISGGSGTLLCSLDGGQTWQKDS--T 298
Query: 157 AEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
E+ N + I +G+I+G+ LL
Sbjct: 299 VEDVPSNL-YKIIFVSSDQGFIIGQSGTLLR 328
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 260 QSRGFGILDVGYR------SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVK 313
+ R + D+ YR S DE W G +LL TT+GGK+W R + + Y V
Sbjct: 78 EQRPLALGDLDYRFSSISFSGDEGWIVGEPSILLHTTDGGKSWSRVSLSTQLPGTPYQVT 137
Query: 314 FINEK 318
+ K
Sbjct: 138 ALGPK 142
>gi|124024217|ref|YP_001018524.1| hypothetical protein P9303_25281 [Prochlorococcus marinus str. MIT
9303]
gi|123964503|gb|ABM79259.1| Uncharacterized plant photosystem II stability/assembly factor-like
protein [Prochlorococcus marinus str. MIT 9303]
Length = 335
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 136/291 (46%), Gaps = 78/291 (26%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LDI+F D HGF++GT + ++E+ DGG +W RS+ EED N+R SI F G EGW
Sbjct: 49 LDISF--SDAKHGFVVGTNRLIMESNDGGVSWKKRSLDL--EEDENFRLISIDFNGDEGW 104
Query: 178 IVGKPAILLHTSDAGESWERIPLSSQLPGD---MAFWQPHNRAVARRIQNMGWRADGGL- 233
I G+P +++H++DAG++W R+ L ++LPGD + P+N +A + +DGG
Sbjct: 105 IAGQPGLVMHSTDAGKNWSRLKLENKLPGDPYLITNLGPNNAELATNAGAIYRTSDGGTT 164
Query: 234 ----------------------WLLVRGGGLFLSK---GTGITEEFEEVP---VQSRGF- 264
++ V G F S G + + E V VQS G+
Sbjct: 165 WQATVSEAAGAVRDLRRSAAGNYVSVSSLGNFFSTLDIGQDVWQNHERVSSKRVQSLGYQ 224
Query: 265 --------------------GILDV----------GYRSQDEAW-------AAGGSGVLL 287
G +D GY D +W AAGG+G L+
Sbjct: 225 PNGELWMVARGAEIRLNDQPGNVDSWGKAIIPITNGYNYLDLSWDPNGGIWAAGGNGTLI 284
Query: 288 KTTNGGKTWIREKAADNIAANLYSVKFI----NEKKGFVLGNDGVLLQYLG 334
KT + GK+W + D +NL + F ++ KGFVLG G LL+++G
Sbjct: 285 KTLDDGKSWQIDPMGDTQPSNLIRILFDTSSESQAKGFVLGERGHLLRWVG 335
>gi|78183812|ref|YP_376246.1| Ycf48-like protein [Synechococcus sp. CC9902]
gi|108861978|sp|Q3B0C5.1|YC48L_SYNS9 RecName: Full=Ycf48-like protein; Flags: Precursor
gi|78168106|gb|ABB25203.1| photosystem II stability/assembly factor-like [Synechococcus sp.
CC9902]
Length = 333
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 134/288 (46%), Gaps = 77/288 (26%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD++F D +HGFL+G+ + + ET DGG W RS+ +EE N+R SI F+G+EGW
Sbjct: 49 LDVSFT--DPSHGFLVGSNRMIRETDDGGAHWNDRSLDLPDEE--NFRLISIDFEGQEGW 104
Query: 178 IVGKPAILLH-------------------------------------------TSDAGES 194
I G+P +L+H T+D GES
Sbjct: 105 IAGQPGLLMHSTDGGQNWTRLFLDTKLPGEPYLITALGKSSAELATNVGAVYKTNDGGES 164
Query: 195 WERIPLS-------------------SQLPGDMAFWQP-------HNRAVARRIQNMGWR 228
WE S L A W+P H R ++R+Q++G++
Sbjct: 165 WEASVTDAAGAVRDLRRSSNGSYVSVSGLGNFYATWEPGETVWKVHQRVSSQRLQSIGYQ 224
Query: 229 ADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
DG LW++ RG + L+ G G E++ + +P+ + G+G +D+ + WA GG+G L
Sbjct: 225 PDGNLWMVARGAQIRLNDGDGNVEDWSKAIIPI-TNGYGYMDMAWDDDGGIWAGGGNGTL 283
Query: 287 LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
L + +GG +W + D +N F ++ FVLG G LL+++G
Sbjct: 284 LVSHDGGDSWETDPVGDQQPSNFTRFVF-DDDHAFVLGERGNLLRWVG 330
>gi|359461322|ref|ZP_09249885.1| Ycf48-like protein [Acaryochloris sp. CCMEE 5410]
Length = 307
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 73/104 (70%), Gaps = 7/104 (6%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
+WE V +P D V LD++F D HG+L+GT LLET DGGK+W R + D
Sbjct: 5 SWETVALPTDSTV--LDVSFASPD--HGWLVGTNSALLETFDGGKSWEQRPLALG---DL 57
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
+YRF+SISF G EGWIVG+P+ILLHT+D G+SW R+ LS+QLPG
Sbjct: 58 DYRFSSISFSGDEGWIVGEPSILLHTTDGGKSWSRVSLSTQLPG 101
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 32/235 (13%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
+ G+++G LL T DGGK+W+ S+ S + Y+ ++ K E ++ +
Sbjct: 69 DEGWIVGEPSILLHTTDGGKSWSRVSL-STQLPGTPYQVTALGPKSVE--MITDLGAIYR 125
Query: 188 TSDAGESW--------------------ERIPLSSQLPGDMAF------WQPHNRAVARR 221
T D + W + + +SS+ F WQ H+R ARR
Sbjct: 126 TQDEAQHWTALVEEATGATRNINRSEDGKYVAISSRGSFYTTFDPSETSWQSHDRNGARR 185
Query: 222 IQNMGWRADGGLWLLVRGGGLFLSKG---TGITEEFEEVPVQSRGFGILDVGYRSQDEAW 278
IQ MG+ +G W+L +GG + S G G E + G+LD+ YR+ DE W
Sbjct: 186 IQTMGFDPNGNPWILNKGGQVQFSTGFLENGDYAWDEAFTPGTNKIGLLDLAYRTPDEVW 245
Query: 279 AAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
+GGSG LL + +GG+TW ++ +++ +NLY + F++ +GF++G G LL+++
Sbjct: 246 ISGGSGTLLCSLDGGQTWQKDSTVEDVPSNLYKIIFVSSDQGFIIGQSGTLLRFI 300
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW-IREKAADNIAANLYSVKFINEKKGFVLG 324
+LDV + S D W G + LL+T +GGK+W R A ++ S+ F + +G+++G
Sbjct: 17 VLDVSFASPDHGWLVGTNSALLETFDGGKSWEQRPLALGDLDYRFSSISFSGD-EGWIVG 75
Query: 325 NDGVLLQ 331
+LL
Sbjct: 76 EPSILLH 82
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 98 EEALSAWERVYIPVDPGVVLLDIAF-VPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
E AW+ + P + LLD+A+ PD++ ++ G TLL + DGG+TW S
Sbjct: 214 ENGDYAWDEAFTPGTNKIGLLDLAYRTPDEV---WISGGSGTLLCSLDGGQTWQKDST-- 268
Query: 157 AEEEDFNYRFNSISF-KGKEGWIVGKPAILL 186
ED I F +G+I+G+ LL
Sbjct: 269 --VEDVPSNLYKIIFVSSDQGFIIGQSGTLL 297
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 260 QSRGFGILDVGYR------SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVK 313
+ R + D+ YR S DE W G +LL TT+GGK+W R + + Y V
Sbjct: 48 EQRPLALGDLDYRFSSISFSGDEGWIVGEPSILLHTTDGGKSWSRVSLSTQLPGTPYQVT 107
Query: 314 FINEK 318
+ K
Sbjct: 108 ALGPK 112
>gi|33864741|ref|NP_896300.1| Ycf48-like protein [Synechococcus sp. WH 8102]
gi|81575358|sp|Q7U9P8.1|YC48L_SYNPX RecName: Full=Ycf48-like protein; Flags: Precursor
gi|33632264|emb|CAE06720.1| similar to plant photosystem II stability/assembly factor
[Synechococcus sp. WH 8102]
Length = 333
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 79/289 (27%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+AF D HG+L+G+ + + ET DGG TW RS+ EEE N+R SI F G EGW
Sbjct: 49 LDVAFT--DSRHGYLVGSNRMIRETNDGGATWNDRSLDLPEEE--NFRLISIDFNGDEGW 104
Query: 178 IV--------------------------GKPAIL-----------------LHTSDAGES 194
I G+P ++ T D G S
Sbjct: 105 IAGQPGLLMHTSDGGQNWTRLFLDTKLPGEPYLITALGSHSAEMATNVGAVYETHDDGGS 164
Query: 195 WERIP---------------------------LSSQLPGDMAFWQPHNRAVARRIQNMGW 227
WE + ++ PGD + WQ H R ++R+Q++G+
Sbjct: 165 WEALVTDAAGAVRDLRRGDDGSYVSVSSLGNFYATWQPGD-SVWQVHQRVSSQRLQSIGY 223
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
+ DG LW++ RG + L+ +G E + + +P+ + G+G +D+ + WA GG+G
Sbjct: 224 QPDGNLWMVARGAQIRLNDESGNLESWTKAIIPI-TNGYGYMDMAWDEDGAIWAGGGNGT 282
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
LL + +G +W + D +N + F + FVLG G LL+++G
Sbjct: 283 LLVSRDGADSWEIDPVGDRQPSNFTRMVF-DWDHAFVLGERGNLLRWVG 330
>gi|5139339|emb|CAB45644.1| hypothetical protein [Anabaena variabilis]
Length = 134
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 78 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+L + L G + P+ S + W V +P + LLDIAF ++ HGFL+G+
Sbjct: 8 FALLVVLLLCIGCSKVPSTS---YNPWAVVSLPTE--AKLLDIAFT-ENPQHGFLVGSNA 61
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
TLLET DGG W P ++ +D YRF+S+SF GKEGWI G+P++LLHT+D G SW R
Sbjct: 62 TLLETNDGGNNWQPLNL---ALDDDRYRFDSVSFAGKEGWIAGEPSLLLHTTDEGRSWSR 118
Query: 198 IPLSSQLPGD 207
IPLS +LPG+
Sbjct: 119 IPLSEKLPGN 128
>gi|88808085|ref|ZP_01123596.1| photosystem II stability/assembly factor-like protein
[Synechococcus sp. WH 7805]
gi|88788124|gb|EAR19280.1| photosystem II stability/assembly factor-like protein
[Synechococcus sp. WH 7805]
Length = 336
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 135/306 (44%), Gaps = 83/306 (27%)
Query: 102 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED 161
S W+ V + D LD+AF D HGFL+G+ + +LET DGG +W RS+ +EE
Sbjct: 35 SPWQVVDLNTDANP--LDVAFTSAD--HGFLVGSNRLILETNDGGSSWNERSLDLPDEE- 89
Query: 162 FNYRFNSISFKGKEGWIV--------------------------GKPAIL---------- 185
N+R SI+F+G +GWI G+P ++
Sbjct: 90 -NFRLLSIAFEGDDGWIAGQPGLLMHTTDGGQNWTRLFLDTKLPGEPYLITALGADSAEL 148
Query: 186 -------LHTSDAGESWE--------------------RIPLSS-------QLPGDMAFW 211
T D G SWE + +SS +PG W
Sbjct: 149 ATNVGAVYRTRDGGGSWEAEVSDAAGAVRDLRRSADGGYVSVSSLGNFYATWIPG-QEVW 207
Query: 212 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDV 269
Q H R ++R+Q++G++ DG LW++ RG + L+ E + + +P+ + G+G +D+
Sbjct: 208 QVHQRVSSQRLQSIGYQPDGNLWMVARGAQIRLNDNAEDPESWNKPIIPI-TNGYGYMDM 266
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFIN---EKKGFVLGND 326
+ WA GG+G LL + +GG +W R+ + N F + + F+LG
Sbjct: 267 AWSKDGAIWAGGGNGTLLVSRDGGDSWERDPESRQAPTNFNRFVFDDSEGQDHAFLLGER 326
Query: 327 GVLLQY 332
G++L +
Sbjct: 327 GLMLHW 332
>gi|148238586|ref|YP_001223973.1| Ycf48-like protein [Synechococcus sp. WH 7803]
gi|147847125|emb|CAK22676.1| Uncharacterized protein related to plant photosystem II
stability/assembly factor [Synechococcus sp. WH 7803]
Length = 339
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 136/309 (44%), Gaps = 89/309 (28%)
Query: 102 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED 161
S W+ V + D LD+AF D HGFL+G+ + +LET DGG +W RS+ +EE
Sbjct: 38 SPWQVVDLNTDANP--LDVAFTSAD--HGFLVGSNRLILETNDGGSSWNERSLDLPDEE- 92
Query: 162 FNYRFNSISFKGKEGWIV--------------------------GKPAIL---------- 185
N+R SI+F+G +GWI G+P ++
Sbjct: 93 -NFRLLSIAFEGDDGWIAGQPGLLMHTTDGGQNWTRLFLDTKLPGEPYLITALGPDSAEL 151
Query: 186 -------LHTSDAGESWE--------------------RIPLSS-------QLPGDMAFW 211
T D G SWE + +SS PG W
Sbjct: 152 ATNVGAVYRTRDGGGSWEAKVSDAAGAVRDLRRGADGSYVSVSSLGNFYATWTPG-QDVW 210
Query: 212 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEE-----VPVQSRGFGI 266
Q H R ++R+Q++G++ DG LW++ RG + L+ E+FE +P+ + G+G
Sbjct: 211 QVHQRVSSQRLQSIGYQPDGNLWMVARGAQIRLND---TAEDFESWSKPIIPI-TNGYGY 266
Query: 267 LDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFIN---EKKGFVL 323
+D+ + WA GG+G LL + +GG +W R+ + N F + ++ F+L
Sbjct: 267 MDMAWSKDGAIWAGGGNGTLLVSRDGGDSWERDPESRQAPTNFNRFVFNDSQGQEHAFLL 326
Query: 324 GNDGVLLQY 332
G G++L +
Sbjct: 327 GERGLMLHW 335
>gi|37520424|ref|NP_923801.1| hypothetical protein gvip108 [Gloeobacter violaceus PCC 7421]
gi|81710889|sp|Q7NMB1.1|YC48L_GLOVI RecName: Full=Ycf48-like protein; Flags: Precursor
gi|35211418|dbj|BAC88796.1| ycf48 [Gloeobacter violaceus PCC 7421]
Length = 323
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 129/287 (44%), Gaps = 77/287 (26%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLDIAFV D +G+ +G+R TLL T DGG++W ++P + D RF S+SF GK G
Sbjct: 42 LLDIAFVDD--KNGWAVGSRSTLLRTADGGESWT--AVPVKLDSD--SRFLSVSFDGKNG 95
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLPG----------DMA----------------- 209
WI G+P LL T + G SW I L +LPG D A
Sbjct: 96 WIGGEPKRLLRTVNGGASWTSITLDQRLPGSPLKVYALGADTAEVVLNSGLVIKTVNGGK 155
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE--EFEEVP---VQSRGF 264
WQ A A I++ ADG W++ GG +L G + +E +Q+ GF
Sbjct: 156 NWQVVTPASAGGIRSAERVADGSYWVVSTRGGSYLQWKPGDPQWTNYERTSSRRIQAMGF 215
Query: 265 ------------------------------------GILDVGYRSQDEA-WAAGGSGVLL 287
+LD Y + D+ WAAGG G L+
Sbjct: 216 SSGKAGWMINQGGEMQFTANQGETWTPGRSVILNGLSLLDADYTAADKKIWAAGGGGTLI 275
Query: 288 KTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
+ + G+ W E+ I +L +V+FI KGFVLG +GVLL+Y G
Sbjct: 276 VSADDGQNWKAEEVP-GIKGSLLNVEFIGN-KGFVLGQNGVLLKYRG 320
>gi|397629785|gb|EJK69505.1| hypothetical protein THAOC_09231, partial [Thalassiosira oceanica]
Length = 489
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 25/229 (10%)
Query: 103 AWERVYI-PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED 161
+WER+ + P PG +A P N ++ + + T++ G+ W + +E
Sbjct: 55 SWERIPLSPKLPGEPTGILALGP---NQAEMITSSGAVYTTENAGRNWKAQV-----KET 106
Query: 162 FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQ-------LPGDMAFWQPH 214
+ N IS G G +I+ D+ S+ + +SS+ PG FW PH
Sbjct: 107 IDATLNRISSSGVSGASYFTGSIVNEQRDSDGSY--LAVSSRGNFFLTWQPG-QEFWIPH 163
Query: 215 NRAVARRIQNMGW-RAD--GGLWLLVRGGGLFLSKGTGITEE---FEEVPVQSRGFGILD 268
NR RRIQNMG+ R D G+W+ + GG L +S+ ++ E F E +++ G+GI D
Sbjct: 164 NRGTPRRIQNMGFVRGDIKNGVWMTLNGGKLLVSEKADLSSEEFPFNEAAIKTGGYGITD 223
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE 317
V +R+ +E WA GGS + +T+ GK + +K+A++I NLY+VKF E
Sbjct: 224 VAWRNDNEVWAVGGSNTMFYSTDNGKNFSFDKSANDIPGNLYNVKFFPE 272
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 141 ETKDGGKTWAPRSIPSAE-EEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP 199
ET DGG+TW PRS + + EE+ +YRF +SFK EGW++GKP +LLHT D G+SWERIP
Sbjct: 1 ETSDGGQTWEPRSFSNLDAEEEISYRFQVVSFKDGEGWVLGKPTLLLHTKDGGKSWERIP 60
Query: 200 LSSQLPGD 207
LS +LPG+
Sbjct: 61 LSPKLPGE 68
>gi|338746106|emb|CCC15102.1| photosystem II stability/assembly factor HCF136 [Lepidodinium
chlorophorum]
Length = 443
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 32/220 (14%)
Query: 17 SLSSLFA-PRLNRTN---AQAQQPRF------------ISTSRACSLP-------SSDSS 53
S+SS+++ P L+ T+ A+A QP ++ S + SLP +++
Sbjct: 54 SMSSIYSQPALSPTHGRLAKAPQPTQAWTRQLGPSFWQLTKSASMSLPFLQPVRAEGEAA 113
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S S+SS + R+ V +TA L+++I G + AK+E + +W ++ +P+D
Sbjct: 114 EDSVPLSASSEFTHGRRDVLRTAGLAMAIE----AGSLGRSAKAER-IESWRKLEVPLDA 168
Query: 114 G---VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN-YRFNSI 169
++L +I F D G+L+ ++ T LET GGKTW P+S+ ++ +RF
Sbjct: 169 EPKEIILYNITFDNKDPARGYLVRSKGTFLETTHGGKTWTPQSVGGLSRDELQGFRFTEC 228
Query: 170 SFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMA 209
S K EG+I+G+P ILLH DA SW+R+PLS +LPG+ A
Sbjct: 229 SLKDGEGFIIGQPPILLHKKDASASWQRVPLSVKLPGNPA 268
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 39/212 (18%)
Query: 98 EEALSAWERV----YIPVDPGVVLLDIAFVPDDLNHGFLLGTRQT--LLETKDGGKTWAP 151
++A ++W+RV +P +P + D L +G + T + +++ GK W
Sbjct: 248 KDASASWQRVPLSVKLPGNPAAI--------DALGNGKVELATDTGAIYASENAGKKWKA 299
Query: 152 RSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQ-------L 204
+ + E N +S G +G I+ + G RI +SS+
Sbjct: 300 QVL-----EPIADTLNRVSSSGVQGASFYTGNIV--SIQRGVDGSRIAVSSRGNFYLTWK 352
Query: 205 PGDMAFWQPHNRAVARRIQNMGWRADG---GLWLLVRGGGLFLSKGTGITEE------FE 255
PGD A W PHNR V RRI +MG R + G W+ GG LF ++ E FE
Sbjct: 353 PGDSA-WLPHNRLVRRRIMSMGLRTENPSDGFWMTTAGGELFKTQADLDMAELPLDLPFE 411
Query: 256 EVPVQSRGFGILDVGY-RSQDEAWAAGGSGVL 286
E+P+ + G I+DV Y + WA GG G++
Sbjct: 412 EIPINAGGRSIIDVNYLPDRKNVWAVGGGGII 443
>gi|87123077|ref|ZP_01078928.1| photosystem II stability/assembly factor-like [Synechococcus sp.
RS9917]
gi|86168797|gb|EAQ70053.1| photosystem II stability/assembly factor-like [Synechococcus sp.
RS9917]
Length = 330
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 126/288 (43%), Gaps = 77/288 (26%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI-------- 169
LD+AF D HGFL+G+ + +LET DGG +W+ RS+ EEE N+R SI
Sbjct: 49 LDVAFT--DAEHGFLVGSNRMILETNDGGSSWSERSLDLPEEE--NFRLISIDFDGKDGW 104
Query: 170 ----------SFKGKEGW--------IVGKPAIL-----------------LHTSDAGES 194
S G W + G+P ++ + D G S
Sbjct: 105 IAGQPGLLMHSTDGGNNWTRLFLDTKLPGEPYLITALGPNTAELATNVGAVYRSRDGGGS 164
Query: 195 WE-------------------RIPLSSQLPGDMAFWQP-------HNRAVARRIQNMGWR 228
WE R S L A W P H R ++R+Q++G++
Sbjct: 165 WEAEVSDAAGAVRDLRRSDDGRYVSVSSLGNFYASWDPGQDVWQVHQRVSSQRLQSIGYQ 224
Query: 229 ADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
DG LW+L RG + + G E + + +P+ + G+G +D+ + WA GG+G L
Sbjct: 225 PDGNLWMLARGAQIRFNTERGNNESWSKPIIPI-TNGYGYMDLAWTPDGAIWAGGGNGTL 283
Query: 287 LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
L + +GG++W R+ N + ++ K F+LG GVLL++ G
Sbjct: 284 LMSRDGGESWQRDPVGAEQPTNFTRFE-ESDGKIFLLGERGVLLRWQG 330
>gi|260436439|ref|ZP_05790409.1| photosystem II stability/assembly factor [Synechococcus sp. WH
8109]
gi|260414313|gb|EEX07609.1| photosystem II stability/assembly factor [Synechococcus sp. WH
8109]
Length = 333
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 141/328 (42%), Gaps = 81/328 (24%)
Query: 77 TLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTR 136
L L ISL+ + A + S W+ I +D LD+AF D HG+L+G+
Sbjct: 14 VLVLGISLSGCVTTHVPTAST----SPWQA--IDLDTQANPLDVAFT--DSRHGYLVGSN 65
Query: 137 QTLLETKDGGKTWAPRSIPSAEEE-------DFNYRFNSI---------SFKGKEGW--- 177
+ + ET DGG W RS+ +EE DFN I S G + W
Sbjct: 66 RMIRETNDGGAHWNERSLDLPDEENFRLISIDFNGDEGWIAGQPGLLMHSDDGGQNWTRL 125
Query: 178 -----IVGKPAIL-----------------LHTSDAGESWE--------------RIPLS 201
+ G+P ++ T + G SWE R
Sbjct: 126 FLDTKLPGEPYLITALGSHSAELATNVGAVYETHNDGSSWEAKVTDAAGAVRDLRRSKDG 185
Query: 202 SQL-------------PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT 248
S + PGD + WQ H R ++R+Q++G++ DG LW++ RG + L+
Sbjct: 186 SYVSVSGLGNFYATWEPGD-SIWQVHQRVSSQRLQSIGFQPDGNLWMVARGAQIRLNDEP 244
Query: 249 GITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
G + + + +P+ + G+G +D+ + WA GG+G LL + +GG +W + D
Sbjct: 245 GNFDSWSKAIIPI-TNGYGYMDLAWDDDGAIWAGGGNGTLLVSRDGGDSWENDPVGDRQP 303
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQYLG 334
+N + F E FVLG G LL+++G
Sbjct: 304 SNFTRMVFDGEHA-FVLGERGNLLRWVG 330
>gi|78211753|ref|YP_380532.1| Ycf48-like protein [Synechococcus sp. CC9605]
gi|108861979|sp|Q3AN55.1|YC48L_SYNSC RecName: Full=Ycf48-like protein; Flags: Precursor
gi|78196212|gb|ABB33977.1| photosystem II stability/assembly factor-like [Synechococcus sp.
CC9605]
Length = 333
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 10/131 (7%)
Query: 77 TLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTR 136
L L ISL+ + A + S W+ + +D LD+AF D +HG+L+G+
Sbjct: 14 VLVLGISLSGCVTTHVPTATT----SPWQA--MDLDTQANPLDVAFT--DSSHGYLVGSN 65
Query: 137 QTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWE 196
+ + ET DGG W RS+ +EE N+R SI F G EGWI G+P +L+H+ D G++W
Sbjct: 66 RMIRETNDGGAHWNERSLDLPDEE--NFRLISIDFSGDEGWIAGQPGLLMHSDDGGQNWT 123
Query: 197 RIPLSSQLPGD 207
R+ L ++LPG+
Sbjct: 124 RLFLDTKLPGE 134
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 205 PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSR 262
PGD + WQ H R ++R+Q++G++ DG LW++ RG + L+ G + + + +P+ +
Sbjct: 202 PGD-SVWQVHQRVSSQRLQSIGFQPDGNLWMVARGAQIRLNDEPGDFDSWSKAIIPI-TN 259
Query: 263 GFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFV 322
G+G +D+ + WA GG+G LL + +GG +W + D +N + F E FV
Sbjct: 260 GYGYMDLAWDDDGAIWAGGGNGTLLVSRDGGDSWENDPVGDRQPSNFTRMVFDGEHA-FV 318
Query: 323 LGNDGVLLQYL 333
LG G LL+++
Sbjct: 319 LGERGNLLRWV 329
>gi|22002575|gb|AAM82726.1| unknown [Synechococcus elongatus PCC 7942]
Length = 348
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 123/299 (41%), Gaps = 90/299 (30%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LDIAF + HG+L+GT L E D G W + A + D YR NSISFKG E
Sbjct: 52 TILDIAFTSNK-QHGWLVGTDLALYE--DSG--WWTKLSERALDLDETYRLNSISFKGDE 106
Query: 176 GWIVGKP-------------------------------------------AILLHTSDAG 192
GW+VG+P A + + D G
Sbjct: 107 GWVVGQPSLMLHTTDGGKNWLRIPLSEKLPGSPLLVTALGKGEAEMATDVAAIYRSRDGG 166
Query: 193 ESWE-RIP--------------------------LSSQLPGDMAFWQPHNRAVARRIQNM 225
+SW+ ++P S+ PGD W P R +RR+Q M
Sbjct: 167 KSWQAQVPDAAGVARSVSRSRDGRYLAVSARGNFYSTWKPGDTT-WTPAQRTSSRRLQLM 225
Query: 226 GWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEA---WAAGG 282
G+ D WL+ RGG L SK + I + +EE+ +S +G R+Q A W
Sbjct: 226 GFGPDDRTWLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERTQAGASLIWPTAP 284
Query: 283 SGVLL---------KTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
S L + G T R + + +NLY++KF K+GFVLG G+LL+Y
Sbjct: 285 SRNLAVGWQWHPVGERGWRGTTGTRSRDC-KLPSNLYTIKFFAPKQGFVLGQRGLLLRY 342
>gi|424866704|ref|ZP_18290534.1| Putative BNR-repeat containing glycosyl hydrolase [Leptospirillum
sp. Group II 'C75']
gi|206603007|gb|EDZ39487.1| Putative glycosyl hydrolase, BNR repeat [Leptospirillum sp. Group
II '5-way CG']
gi|387222633|gb|EIJ77056.1| Putative BNR-repeat containing glycosyl hydrolase [Leptospirillum
sp. Group II 'C75']
Length = 352
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 40/221 (18%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAI 184
D +HG++ G T+L T DGG+TW+P ++ + +I+F +EGW G
Sbjct: 113 DASHGWIAGNDGTILATSDGGQTWSP------QDSGVKFDLYTITFLNSREGWAGGFAGT 166
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR-ADGGLWLLVR-GGGL 242
LLHT+D G +W ++ + A W + + QN GW GL L+ R GG
Sbjct: 167 LLHTTDGGATWNKVST------ETAQWIMNIYFLKSNPQN-GWAVGQDGLVLVTRDGGAT 219
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
+ K I ++ +G+ +R + WA G GV+ T NGG TW +
Sbjct: 220 WTKKNNSIAKDL---------YGVY---FRDANNGWAVGTHGVIQFTANGGDTWTIQNGL 267
Query: 303 DNIAA------------NLYSVKFINEKKGFVLGNDGVLLQ 331
+L+++ FI++K G+ +G G++++
Sbjct: 268 GRGPLGRGVEGRERELNDLHAISFIDDKTGYAVGVLGLVMK 308
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 30/203 (14%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHT 188
G++ G T+L T DGGK W A+ + S+SF GWI G +L T
Sbjct: 76 GWVTGASGTILHTTDGGKNWV------AQNSGTTHWLQSVSFSDASHGWIAGNDGTILAT 129
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT 248
SD G++W P S + D+ + GW GG G L +
Sbjct: 130 SDGGQTWS--PQDSGVKFDL-------YTITFLNSREGWA--GGF-----AGTLLHTTDG 173
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQD--EAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
G T + +V ++ + I+++ + + WA G G++L T +GG TW ++ ++IA
Sbjct: 174 GAT--WNKVSTETAQW-IMNIYFLKSNPQNGWAVGQDGLVLVTRDGGATWTKKN--NSIA 228
Query: 307 ANLYSVKFINEKKGFVLGNDGVL 329
+LY V F + G+ +G GV+
Sbjct: 229 KDLYGVYFRDANNGWAVGTHGVI 251
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 24/168 (14%)
Query: 166 FNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQN 224
FN +SF EGW+ G +LHT+D G++W N +Q+
Sbjct: 65 FNGLSFVSPTEGWVTGASGTILHTTDGGKNWV----------------AQNSGTTHWLQS 108
Query: 225 MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSG 284
+ + W+ G + + G T ++ V+ F + + + + E WA G +G
Sbjct: 109 VSFSDASHGWIAGNDGTILATSDGGQTWSPQDSGVK---FDLYTITFLNSREGWAGGFAG 165
Query: 285 VLLKTTNGGKTWIREKAADNIAANLYSVKFI--NEKKGFVLGNDGVLL 330
LL TT+GG TW K + A + ++ F+ N + G+ +G DG++L
Sbjct: 166 TLLHTTDGGATW--NKVSTETAQWIMNIYFLKSNPQNGWAVGQDGLVL 211
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK-GKE 175
+++I F+ + +G+ +G +L T+DGG TW ++ A++ + F+
Sbjct: 188 IMNIYFLKSNPQNGWAVGQDGLVLVTRDGGATWTKKNNSIAKD------LYGVYFRDANN 241
Query: 176 GWIVGKPAILLHTSDAGESW 195
GW VG ++ T++ G++W
Sbjct: 242 GWAVGTHGVIQFTANGGDTW 261
>gi|124516208|gb|EAY57716.1| putative glycosyl hydrolase, BNR repeat [Leptospirillum rubarum]
Length = 352
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 40/221 (18%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAI 184
D +HG++ G T+L T DGG+TW+P ++ + +I+F +EGW G
Sbjct: 113 DSSHGWIAGNDGTILATSDGGQTWSP------QDSGVKFDLYTITFLNSREGWAGGFAGT 166
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR-ADGGLWLLVR-GGGL 242
LLHT+D G +W ++ + A W + + QN GW GL L+ R GG
Sbjct: 167 LLHTTDGGATWNKVST------ETAQWIMNIYFLKSNPQN-GWAVGQDGLVLVTRDGGAT 219
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
+ K I ++ +G+ +R + WA G GV+ T NGG TW +
Sbjct: 220 WTKKNNSIAKDL---------YGVY---FRDANNGWAVGTHGVIQFTANGGDTWTIQNGL 267
Query: 303 DNIAA------------NLYSVKFINEKKGFVLGNDGVLLQ 331
+L+++ FI++K G+ +G G++++
Sbjct: 268 GRGPLGRGVEGRERELNDLHAISFIDDKTGYAVGVLGLVMK 308
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 32/213 (15%)
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWI 178
+AFV G++ G T+L T DGGKTW A+ + S+SF GWI
Sbjct: 68 LAFVSP--TEGWVTGASGTILHTTDGGKTWV------AQSSGTTHWLQSVSFSDSSHGWI 119
Query: 179 VGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
G +L TSD G++W P S + D+ + GW GG
Sbjct: 120 AGNDGTILATSDGGQTWS--PQDSGVKFDL-------YTITFLNSREGWA--GGF----- 163
Query: 239 GGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD--EAWAAGGSGVLLKTTNGGKTW 296
G L + G T + +V ++ + I+++ + + WA G G++L T +GG TW
Sbjct: 164 AGTLLHTTDGGAT--WNKVSTETAQW-IMNIYFLKSNPQNGWAVGQDGLVLVTRDGGATW 220
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
++ ++IA +LY V F + G+ +G GV+
Sbjct: 221 TKKN--NSIAKDLYGVYFRDANNGWAVGTHGVI 251
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 28/170 (16%)
Query: 166 FNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQN 224
FN ++F EGW+ G +LHT+D G++W +Q G + Q +V+ +
Sbjct: 65 FNGLAFVSPTEGWVTGASGTILHTTDGGKTWV-----AQSSGTTHWLQ----SVSFSDSS 115
Query: 225 MGWRA--DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG 282
GW A DG + GG + + +G+ F + + + + E WA G
Sbjct: 116 HGWIAGNDGTILATSDGGQTWSPQDSGVK------------FDLYTITFLNSREGWAGGF 163
Query: 283 SGVLLKTTNGGKTWIREKAADNIAANLYSVKFI--NEKKGFVLGNDGVLL 330
+G LL TT+GG TW K + A + ++ F+ N + G+ +G DG++L
Sbjct: 164 AGTLLHTTDGGATW--NKVSTETAQWIMNIYFLKSNPQNGWAVGQDGLVL 211
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK-GKE 175
+++I F+ + +G+ +G +L T+DGG TW ++ A++ + F+
Sbjct: 188 IMNIYFLKSNPQNGWAVGQDGLVLVTRDGGATWTKKNNSIAKD------LYGVYFRDANN 241
Query: 176 GWIVGKPAILLHTSDAGESW 195
GW VG ++ T++ G++W
Sbjct: 242 GWAVGTHGVIQFTANGGDTW 261
>gi|410477919|ref|YP_006765556.1| glycosyl hydrolase family protein [Leptospirillum ferriphilum
ML-04]
gi|406773171|gb|AFS52596.1| putative glycosyl hydrolase, BNR repeat protein [Leptospirillum
ferriphilum ML-04]
Length = 350
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 40/221 (18%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAI 184
D +HG++ G T+L T DGG+TW+P ++ + +I+F +EGW G
Sbjct: 111 DSSHGWIAGNDGTILATSDGGQTWSP------QDSGVKFDLYTITFLNSREGWAGGFAGT 164
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR-ADGGLWLLVR-GGGL 242
LLHT+D G +W ++ + A W + + QN GW GL L+ R GG
Sbjct: 165 LLHTTDGGATWNKVST------ETAQWIMNIYFLKSNPQN-GWAVGQDGLVLVTRDGGAT 217
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
+ K I ++ +G+ +R + WA G GV+ T NGG TW +
Sbjct: 218 WTKKNNSIAKDL---------YGVY---FRDANNGWAVGTHGVIQFTANGGDTWTIQNGL 265
Query: 303 DNIAA------------NLYSVKFINEKKGFVLGNDGVLLQ 331
+L+++ FI++K G+ +G G++++
Sbjct: 266 GRGPLGRGVEGRERELNDLHAISFIDDKTGYAVGVLGLVMK 306
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 30/203 (14%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHT 188
G++ G T+L T DGGK W A+ + S+SF GWI G +L T
Sbjct: 74 GWVTGASGTILHTTDGGKNWV------AQNSGTTHWLQSVSFSDSSHGWIAGNDGTILAT 127
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT 248
SD G++W P S + D+ + GW GG G L +
Sbjct: 128 SDGGQTWS--PQDSGVKFDL-------YTITFLNSREGWA--GGF-----AGTLLHTTDG 171
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQD--EAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
G T + +V ++ + I+++ + + WA G G++L T +GG TW ++ ++IA
Sbjct: 172 GAT--WNKVSTETAQW-IMNIYFLKSNPQNGWAVGQDGLVLVTRDGGATWTKKN--NSIA 226
Query: 307 ANLYSVKFINEKKGFVLGNDGVL 329
+LY V F + G+ +G GV+
Sbjct: 227 KDLYGVYFRDANNGWAVGTHGVI 249
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 24/168 (14%)
Query: 166 FNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQN 224
FN ++F EGW+ G +LHT+D G++W N +Q+
Sbjct: 63 FNGLAFVSPTEGWVTGASGTILHTTDGGKNWV----------------AQNSGTTHWLQS 106
Query: 225 MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSG 284
+ + W+ G + + G T ++ V+ F + + + + E WA G +G
Sbjct: 107 VSFSDSSHGWIAGNDGTILATSDGGQTWSPQDSGVK---FDLYTITFLNSREGWAGGFAG 163
Query: 285 VLLKTTNGGKTWIREKAADNIAANLYSVKFI--NEKKGFVLGNDGVLL 330
LL TT+GG TW K + A + ++ F+ N + G+ +G DG++L
Sbjct: 164 TLLHTTDGGATW--NKVSTETAQWIMNIYFLKSNPQNGWAVGQDGLVL 209
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK-GKE 175
+++I F+ + +G+ +G +L T+DGG TW ++ A++ + F+
Sbjct: 186 IMNIYFLKSNPQNGWAVGQDGLVLVTRDGGATWTKKNNSIAKD------LYGVYFRDANN 239
Query: 176 GWIVGKPAILLHTSDAGESW 195
GW VG ++ T++ G++W
Sbjct: 240 GWAVGTHGVIQFTANGGDTW 259
>gi|116620987|ref|YP_823143.1| BNR repeat-containing glycosyl hydrolase [Candidatus Solibacter
usitatus Ellin6076]
gi|116224149|gb|ABJ82858.1| glycosyl hydrolase, BNR repeat-containing protein [Candidatus
Solibacter usitatus Ellin6076]
Length = 325
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 40/232 (17%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W + IP G L +AF D N G +G ++ T D G+TW R PSA E+
Sbjct: 62 WAQRKIPNVSG--LRALAF--GDENRGLAIGEGGVIVATSDAGRTWQKR--PSATTENLT 115
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESWER----IPLSSQLPGDMAFWQPHNRAVA 219
I G EGWI G ++LHTSD G++W + + LS + + F P N
Sbjct: 116 ----DIQMIGDEGWIAGFDGVILHTSDGGKTWSKQESGVTLSLET---LYFLDPQN---- 164
Query: 220 RRIQNMGWRAD-GGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAW 278
GW A GL L GG ++++ V V + + + +R + W
Sbjct: 165 ------GWAAGWAGLVLHTVDGG----------KKWQIVKVPGASWSLSSIAFRDAKDGW 208
Query: 279 AAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+G +G L T +GG TW E + L S+ F +G++ +DG L+
Sbjct: 209 ISGFAGQLFHTRDGGATW--ESKTTPYSGWLTSIGFDGANRGWITTDDGFLM 258
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ V +P L IAF D G++ G L T+DGG TW ++ P ++
Sbjct: 184 WQIVKVP-GASWSLSSIAF--RDAKDGWISGFAGQLFHTRDGGATWESKTTP------YS 234
Query: 164 YRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQL 204
SI F G GWI L+ T DAGE+W+ P +Q
Sbjct: 235 GWLTSIGFDGANRGWITTDDGFLMST-DAGETWKPQPTETQF 275
>gi|431796686|ref|YP_007223590.1| photosystem II stability/assembly factor-like protein [Echinicola
vietnamensis DSM 17526]
gi|430787451|gb|AGA77580.1| putative photosystem II stability/assembly factor-like protein
[Echinicola vietnamensis DSM 17526]
Length = 933
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 34/230 (14%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
+W+R+ D G L DI +V DDL F G Q +L+T DGG+ W ++P A +
Sbjct: 22 SWQRI---TDRGNALTDIHWVNDDL--AFASG-NQIMLKTTDGGEGWTELAMPIAAD--- 72
Query: 163 NYRFNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARR 221
++ F + G + GK LL T D G+SW I L++
Sbjct: 73 ---LLAVDFHDHQIGAMAGKNGTLLQTKDGGQSWNIINLNT----------------TSD 113
Query: 222 IQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAG 281
I + +R+ +W+ G L S G T E+ + I + + S D+ + A
Sbjct: 114 ILTVNYRSSEEIWISGTSGTLKYSSNGGETWTSVELGTTA---AINTLVFTSGDQGFLAT 170
Query: 282 GSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
SG + KTTN G++W ++ +++ L + F N+ G+ +G++G +L+
Sbjct: 171 SSGAIYKTTNNGQSW--QQLTSSVSTALNDLYFTNDTTGYAVGDEGTILK 218
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/303 (19%), Positives = 114/303 (37%), Gaps = 79/303 (26%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
K+ + W + +P+ ++ +D D G + G TLL+TKDGG++W ++
Sbjct: 54 KTTDGGEGWTELAMPIAADLLAVDFH----DHQIGAMAGKNGTLLQTKDGGQSWNIINLN 109
Query: 156 SAEEE-DFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQ--------LPG 206
+ + NYR +E WI G L ++S+ GE+W + L + G
Sbjct: 110 TTSDILTVNYR------SSEEIWISGTSGTLKYSSNGGETWTSVELGTTAAINTLVFTSG 163
Query: 207 DMAF-----------------WQPHNRAVARRIQNMGWRAD------------------G 231
D F WQ +V+ + ++ + D G
Sbjct: 164 DQGFLATSSGAIYKTTNNGQSWQQLTSSVSTALNDLYFTNDTTGYAVGDEGTILKTVDSG 223
Query: 232 GLWLLVRGGGLFLSK-----------GTGITEEFEEVPVQSRGFGIL-----------DV 269
W ++ G + K G + EE + + G L +
Sbjct: 224 NHWAFIQSGTNYDYKRVAFHRDRPDIGIIVGEEGTVLYTNNAGLTFLVRNSRTTEDIHGI 283
Query: 270 GYR-SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
Y+ S + A G +L++TN G +WI + ++ + F+N+ +G++ G + V
Sbjct: 284 DYKQSTNTVVAVADGGTILRSTNAGSSWISLLSGH--PSDFLATDFVNDSRGYIAGKEAV 341
Query: 329 LLQ 331
+ +
Sbjct: 342 IFR 344
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 35/220 (15%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE- 175
L D+ F D G+ +G T+L+T D G WA I S NY + ++F
Sbjct: 196 LNDLYFTND--TTGYAVGDEGTILKTVDSGNHWA--FIQSGT----NYDYKRVAFHRDRP 247
Query: 176 --GWIVGKPAILLHTSDAGESW-ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGG 232
G IVG+ +L+T++AG ++ R +++ + + Q N VA ADGG
Sbjct: 248 DIGIIVGEEGTVLYTNNAGLTFLVRNSRTTEDIHGIDYKQSTNTVVAV--------ADGG 299
Query: 233 LWLL-VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTN 291
L G ++S +G +F L + + + AG V+ +TTN
Sbjct: 300 TILRSTNAGSSWISLLSGHPSDF------------LATDFVNDSRGYIAGKEAVIFRTTN 347
Query: 292 GGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
GG ++ NI + +++ F + G+V+G+DG +L
Sbjct: 348 GGDSFNDYSRPLNI--DFHAIAFQSPAFGYVVGDDGTMLN 385
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 117/298 (39%), Gaps = 46/298 (15%)
Query: 38 FISTSRACSLPSSDSSSS-SSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAK 96
F++TS ++++ S +SS S++LN F + T ++ G K
Sbjct: 167 FLATSSGAIYKTTNNGQSWQQLTSSVSTALNDLYFTNDTTGYAV--------GDEGTILK 218
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
+ ++ + W +I +AF D + G ++G T+L T + G T+ R+ +
Sbjct: 219 TVDSGNHW--AFIQSGTNYDYKRVAFHRDRPDIGIIVGEEGTVLYTNNAGLTFLVRNSRT 276
Query: 157 AEEEDFNYRFNSISFKGKEGWIVG--KPAILLHTSDAGESWERIPLSSQLPGDM---AFW 211
E+ + I +K +V +L +++AG SW I L S P D F
Sbjct: 277 TED------IHGIDYKQSTNTVVAVADGGTILRSTNAGSSW--ISLLSGHPSDFLATDFV 328
Query: 212 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGY 271
+A + + ++ GG F + +F + QS FG
Sbjct: 329 NDSRGYIAGK--------EAVIFRTTNGGDSFNDYSRPLNIDFHAIAFQSPAFG------ 374
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L TTN G +W + +LY + F + G+++G G L
Sbjct: 375 ------YVVGDDGTMLNTTNSGGSWTALNPKTEL--DLYGLYFADADTGYIVGESGYL 424
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 53/248 (21%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE- 175
L FV D + G++ G + T +GG ++ S P N F++I+F+
Sbjct: 322 FLATDFVND--SRGYIAGKEAVIFRTTNGGDSFNDYSRP------LNIDFHAIAFQSPAF 373
Query: 176 GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD----G 231
G++VG +L+T+++G SW + ++L D+ + + G+ A G
Sbjct: 374 GYVVGDDGTMLNTTNSGGSWTALNPKTEL--DLYGLYFADADTGYIVGESGYLASTVNRG 431
Query: 232 GLWLLVRGGG------------------------LFLSKGTGITEEFEEVPVQS----RG 263
W + G + S G +++E+ + + G
Sbjct: 432 VNWSTIHAGDKGYDYHDIDFFESGPGIIIGEGGHVLKSNSNG---DWQEISIGTSDDLHG 488
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
++D + A G +G T N ++W E N A NL V F++ GF++
Sbjct: 489 MFMID-----ESAAIIVGDNGQAFFTQNQFESW--EPLNTNTAQNLRDVAFLDSLTGFIV 541
Query: 324 GNDGVLLQ 331
G+ G++LQ
Sbjct: 542 GDKGLILQ 549
>gi|91776610|ref|YP_546366.1| hypothetical protein Mfla_2258 [Methylobacillus flagellatus KT]
gi|91710597|gb|ABE50525.1| conserved hypothetical protein [Methylobacillus flagellatus KT]
Length = 329
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 35/233 (15%)
Query: 105 ERVYIPVDPGVV--LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
E++++ D G L ++F D HGF +G T+L T +GG+TW + + E
Sbjct: 36 EQIWMQQDSGTSHELRSVSFASDG-QHGFAVGFGGTILATSNGGETWVAQDSGTFSE--- 91
Query: 163 NYRFNSISFK--GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVAR 220
NS+S G++GW VG +L TS+ G +W + S P ++ + +VA
Sbjct: 92 ---LNSVSISRDGRQGWAVGFGGAILTTSNGGTTW--VQQESGTP-----YELRSVSVAS 141
Query: 221 RIQNMGWRAD-GGLWLLVRGGGL-FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAW 278
Q+ GW GG L GGL + + +G E V + G W
Sbjct: 142 DGQH-GWAVGFGGTILATTNGGLAWEPQASGTMNELRSVTFTADG-----------RTGW 189
Query: 279 AAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE-KKGFVLGNDGVLL 330
A G +G +L T +GG+TWIR+ + + LYS+ ++ + G+V+G G +L
Sbjct: 190 AVGFNGTILSTVDGGETWIRQDSG--TSNELYSISITSDGRHGWVVGFGGTIL 240
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 34/216 (15%)
Query: 123 VPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKP 182
V D HG+ +G T+L T +GG W P++ + E R + + G+ GW VG
Sbjct: 139 VASDGQHGWAVGFGGTILATTNGGLAWEPQASGTMNE----LRSVTFTADGRTGWAVGFN 194
Query: 183 AILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQN---MGWRADGGLWLLVRG 239
+L T D GE+W R Q G N + I + GW G +L
Sbjct: 195 GTILSTVDGGETWIR-----QDSG------TSNELYSISITSDGRHGWVVGFGGTILTTS 243
Query: 240 --GGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI 297
GG++ + +G E V V G WA G +G++L T+NGG+ W
Sbjct: 244 DSGGVWKMQSSGTQHELHSVSVVPDG-----------GSGWAVGFNGIILATSNGGQAWT 292
Query: 298 REKAADNIAANLYSVKFINE-KKGFVLGNDGVLLQY 332
+ + + L SV + + G+ +G G +L +
Sbjct: 293 VQSSG--TSNELRSVHVTADGRTGWAVGFAGTILAF 326
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 103 AWERVYIPVDPGVV--LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE 160
AWE P G + L + F D G+ +G T+L T DGG+TW + ++ E
Sbjct: 164 AWE----PQASGTMNELRSVTFTADGRT-GWAVGFNGTILSTVDGGETWIRQDSGTSNEL 218
Query: 161 DFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWE 196
Y SI+ G+ GW+VG +L TSD+G W+
Sbjct: 219 ---YSI-SITSDGRHGWVVGFGGTILTTSDSGGVWK 250
>gi|374851683|dbj|BAL54636.1| glycosyl hydrolase [uncultured Acidobacteria bacterium]
Length = 304
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 35/218 (16%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KE 175
L D+ F+ + G+++G +L T DGG+ WA S+ S EED S+ F K
Sbjct: 74 LNDVFFI--NRRRGWIVGDGGVILMTTDGGQRWA--SVASVVEEDLY----SVWFHNEKR 125
Query: 176 GWIVGKPAILLHTSDAGESWERIPLSSQLPG-DMAFWQPHNRAVARRIQNMGWRADG-GL 233
GWIVG ++L T D G SW R Q+ G D + H + +N+GW G
Sbjct: 126 GWIVGADGVILFTDDGGRSWVR-----QISGTDEYLYHLHFKT-----ENLGWIVGSRGT 175
Query: 234 WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGG 293
L GG +K + T+ + V +R + W G G++L TT+GG
Sbjct: 176 ILHTENGGRNWTKQSSGTQN-----------DLFRVYFRDKKRGWITGSRGLILHTTDGG 224
Query: 294 KTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
KTW+ + L V F +K+G+++G +G +L
Sbjct: 225 KTWV--PLPSGVEQILLGVTF-RKKEGWIVGWEGTILH 259
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 24/172 (13%)
Query: 162 FNYRFNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVAR 220
F FN+I F KE GWIVG ++LHTSD G SW+ S + + F+ R
Sbjct: 29 FTQNFNAIYFPTKEHGWIVGDGGLILHTSDRGVSWQVQTSSVRTNLNDVFFINRRR---- 84
Query: 221 RIQNMGW-RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
GW DGG+ L+ GG + + EE + V + ++ W
Sbjct: 85 -----GWIVGDGGVILMTTDGGQRWASVASVVEE-----------DLYSVWFHNEKRGWI 128
Query: 280 AGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G GV+L T +GG++W+R+ + + LY + F E G+++G+ G +L
Sbjct: 129 VGADGVILFTDDGGRSWVRQISGTD--EYLYHLHFKTENLGWIVGSRGTILH 178
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 32/206 (15%)
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLH 187
HG+++G +L T D G +W + N + F + GWIVG ++L
Sbjct: 43 HGWIVGDGGLILHTSDRGVSW------QVQTSSVRTNLNDVFFINRRRGWIVGDGGVILM 96
Query: 188 TSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW--RADGGLWLLVRGGGLFLS 245
T+D G+ W + +S + D+ HN + GW ADG + GG ++
Sbjct: 97 TTDGGQRWASV--ASVVEEDLYSVWFHN-------EKRGWIVGADGVILFTDDGGRSWVR 147
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNI 305
+ +G T+E+ + + +++++ W G G +L T NGG+ W ++ +
Sbjct: 148 QISG-TDEY-----------LYHLHFKTENLGWIVGSRGTILHTENGGRNWTKQSSGTQ- 194
Query: 306 AANLYSVKFINEKKGFVLGNDGVLLQ 331
+L+ V F ++K+G++ G+ G++L
Sbjct: 195 -NDLFRVYFRDKKRGWITGSRGLILH 219
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D G++ G+R +L T DGGKTW P +PS E+ ++F+ KEGWIVG +
Sbjct: 204 DKKRGWITGSRGLILHTTDGGKTWVP--LPSGVEQILL----GVTFRKKEGWIVGWEGTI 257
Query: 186 LHTSDAGESWERIP 199
LH+ D G +W R+P
Sbjct: 258 LHSPDEGRTWRRVP 271
>gi|284097400|ref|ZP_06385514.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
gi|283831087|gb|EFC35083.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
Length = 1267
Score = 73.2 bits (178), Expect = 1e-10, Method: Composition-based stats.
Identities = 67/219 (30%), Positives = 99/219 (45%), Gaps = 31/219 (14%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKE 175
L +AF D + +G + T+ + D GKTW + E D +R ++SF +E
Sbjct: 329 LQSVAFA--DADRAVAVGEKGTITTSDDSGKTW------TNIEMDTWHRIRNLSFVTDRE 380
Query: 176 GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW-RADGGLW 234
GW VG ++LHT+DAG++WER Q G +W N A+ GW D G
Sbjct: 381 GWAVGDGGLILHTTDAGQTWER-----QTSG---WWYTLN-ALHFINPQKGWIVGDLGTV 431
Query: 235 LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGK 294
L GG T + + +G LD + E W G G++ T NGG
Sbjct: 432 LHTTDGG-----ETWVQQAPRYFHEMIKGIFFLD-----ETEGWVVGWPGIVFHTENGGL 481
Query: 295 TWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
TW R+ + N LY+ FI+ G+++G G +L L
Sbjct: 482 TWKRQNS--NSYNELYAAYFIDRHTGWIVGQFGEILHTL 518
Score = 64.3 bits (155), Expect = 7e-08, Method: Composition-based stats.
Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 24/213 (11%)
Query: 119 DIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF-NYRFNSISFKGKEGW 177
D+ F+ D +G++ G LL T+DGG+ W R + S + N F IS + K GW
Sbjct: 990 DVLFL--DEQNGWIAGDNGILLSTEDGGENW--RRLKSGTTDRIVNVHF--ISLEPKWGW 1043
Query: 178 IVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLV 237
+ + +L+T+D GE W I + +LP D I + + W +
Sbjct: 1044 AMKRDGSMLYTTD-GEDWS-IENNQELPPDFEL----------SINEVAFGNFSEGWAVG 1091
Query: 238 RGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI 297
G + + G +F+ S G + + + WA G +GV+ +T NGG+ W
Sbjct: 1092 ENGDILHNLDGGPIWKFQRT---STGKTLTGIDMKFAPLGWAVGTNGVIQRTVNGGEYWK 1148
Query: 298 REKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+ + +LY V FI ++KG+ +G G++L
Sbjct: 1149 FHET--HAGYDLYGVSFITKRKGWAVGRAGIIL 1179
Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats.
Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 38/221 (17%)
Query: 119 DIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGW 177
DI F D HG+++G + +L T DGG +W +++ + E+ F ++ F + GW
Sbjct: 31 DIHFA--DAKHGWIVGHQGWILHTADGGVSWEKQTVNTNED------FKAVYFTNLRNGW 82
Query: 178 IVGKPAILLHTSDAGESWE-RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
VG ++ T D G W + + L D+ F GW A
Sbjct: 83 AVGDKGVIATTDDGGRHWALQKNQAPTLLLDVFFTN----------SKTGWIAG------ 126
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
GL +K G T + +E + FG+ V + + W G + TT+G +TW
Sbjct: 127 --QDGLLHTKNGGKTWQHQE----ASEFGLGGVHFVDKHRGWIVGDYDRIFVTTDGSQTW 180
Query: 297 ------IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+R + + NL++V F N KG+ G DG +
Sbjct: 181 RKQNELVRMEHDTSEVCNLHTVFFANPYKGWSGGTDGTIFH 221
Score = 60.5 bits (145), Expect = 1e-06, Method: Composition-based stats.
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 38/223 (17%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE--EDFNYRFNSISFKG- 173
++++ F+ + G+ + ++L T DG + W SI + +E DF N ++F
Sbjct: 1029 IVNVHFISLEPKWGWAMKRDGSMLYTTDG-EDW---SIENNQELPPDFELSINEVAFGNF 1084
Query: 174 KEGWIVGKPAILLHTSDAGESW--ERIPLSSQLPG-DMAFWQPHNRAVARRIQNMGWR-- 228
EGW VG+ +LH D G W +R L G DM F +GW
Sbjct: 1085 SEGWAVGENGDILHNLDGGPIWKFQRTSTGKTLTGIDMKF------------APLGWAVG 1132
Query: 229 ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLK 288
+G + V GG E+ + G+ + V + ++ + WA G +G++L
Sbjct: 1133 TNGVIQRTVNGG------------EYWKFHETHAGYDLYGVSFITKRKGWAVGRAGIILS 1180
Query: 289 TTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
TT+GG TW E ++ LY + ++E++ + +G G ++
Sbjct: 1181 TTDGGFTW--ESKLSGMSETLYDILALSEQELYAVGAAGTIIH 1221
Score = 58.2 bits (139), Expect = 6e-06, Method: Composition-based stats.
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 42/204 (20%)
Query: 130 GFLLGTRQTLLETKDGGKTW---APRSIPSAEEEDFNYRFNSISFKGK-EGWIVGKPAIL 185
G+++G T+L T DGG+TW APR F+ I F + EGW+VG P I+
Sbjct: 422 GWIVGDLGTVLHTTDGGETWVQQAPRY--------FHEMIKGIFFLDETEGWVVGWPGIV 473
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS 245
HT + G +W+R +S +N A + R G W++ + G + +
Sbjct: 474 FHTENGGLTWKRQNSNS-----------YNELYAAYFID---RHTG--WIVGQFGEILHT 517
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNI 305
G T +F+ Q+ + V + + G GV+L T NGG TW +K+
Sbjct: 518 LDGGKTWKFQRSGTQAN---LNKVYFADANHGLIVGDEGVILTTLNGGVTWELQKSG--T 572
Query: 306 AANLYSVKFINEKKGFVLGNDGVL 329
+ +LYS F L DG+L
Sbjct: 573 SNDLYS---------FSLSPDGIL 587
Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 30/169 (17%)
Query: 161 DFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVA 219
D+ F I F K GWIVG +LHT+D G SWE+ +++ +AV
Sbjct: 24 DWQTHFTDIHFADAKHGWIVGHQGWILHTADGGVSWEKQTVNT---------NEDFKAVY 74
Query: 220 RRIQNMGWR-ADGGLWLLVRGGGLF--LSKGTGITEEFEEVPVQSRGFGILDVGYRSQDE 276
GW D G+ GG L K T +LDV + +
Sbjct: 75 FTNLRNGWAVGDKGVIATTDDGGRHWALQKNQAPTL-------------LLDVFFTNSKT 121
Query: 277 AWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
W AG G LL T NGGKTW ++A++ L V F+++ +G+++G+
Sbjct: 122 GWIAGQDG-LLHTKNGGKTWQHQEASE---FGLGGVHFVDKHRGWIVGD 166
Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats.
Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 67/259 (25%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D G+++G + T++GG TW ++ S +N + + GWIVG+ +
Sbjct: 460 DETEGWVVGWPGIVFHTENGGLTWKRQNSNS-----YNELYAAYFIDRHTGWIVGQFGEI 514
Query: 186 LHTSDAGESWERIPLSSQ---------------LPGDMAF----------WQPHNRAVAR 220
LHT D G++W+ +Q + GD W+ +
Sbjct: 515 LHTLDGGKTWKFQRSGTQANLNKVYFADANHGLIVGDEGVILTTLNGGVTWELQKSGTSN 574
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEF-------------EEVPV-------- 259
+ + DG +L G G + + TE+F E P+
Sbjct: 575 DLYSFSLSPDG---ILAVGEGGIAMRYSVDTEQFIVELPPAAQDIETVEKPIEPIEYHWE 631
Query: 260 -------QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSV 312
QSR D + S W G G +L+TT+GG TW +++ + L +
Sbjct: 632 IIRQGSWQSR---FTDTYFFSTRTGWTVGDGGTILRTTDGGATWQTQRSG--VTETLQRI 686
Query: 313 KFINEKKGFVLGNDGVLLQ 331
FI+E G++ G GVLL+
Sbjct: 687 VFIDENYGWITGQ-GVLLR 704
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 17/207 (8%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFN--SISFKGK-EGWIVGKP 182
D + G+++G + T DG +TW ++ E D + N ++ F +GW G
Sbjct: 157 DKHRGWIVGDYDRIFVTTDGSQTWRKQNELVRMEHDTSEVCNLHTVFFANPYKGWSGGTD 216
Query: 183 AILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 242
+ HT++ G W+ S+LP +P + + + D + +GG +
Sbjct: 217 GTIFHTTNGGAEWQ--TQYSRLPMIYGHIRP-------TVYDFHFINDDYGVAVAQGGFI 267
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
++ G E ++ Q++ ++ V + + EAWA G +G LL +T+ G TW +
Sbjct: 268 IRTEDGG--ENWKLTENQTKN-DLMGVHFATPKEAWAVGWNGTLLHSTDSGVTW--SMRS 322
Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVL 329
A +L SV F + + +G G +
Sbjct: 323 GTTADDLQSVAFADADRAVAVGEKGTI 349
Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 26/219 (11%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDFNYRFNSISFKGKEG----WIVG 180
D NHG ++G +L T +GG TW +S S + F+ + I G+ G + V
Sbjct: 542 DANHGLIVGDEGVILTTLNGGVTWELQKSGTSNDLYSFSLSPDGILAVGEGGIAMRYSVD 601
Query: 181 KPAILLHTSDAGESWERI-----PLSSQLPG-DMAFWQPHNRAVARRIQNMGWR-ADGGL 233
++ A + E + P+ WQ GW DGG
Sbjct: 602 TEQFIVELPPAAQDIETVEKPIEPIEYHWEIIRQGSWQSRFTDTYFFSTRTGWTVGDGGT 661
Query: 234 WL-LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
L GG + ++ +G+TE + + +G W G GVLL+T NG
Sbjct: 662 ILRTTDGGATWQTQRSGVTETLQRIVFIDENYG------------WITG-QGVLLRTENG 708
Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G+TW + N+ ++ FIN K+G++ + G +L+
Sbjct: 709 GETWHVVREGLKNFRNIRAIHFINPKEGWIGVDRGQILR 747
Score = 48.1 bits (113), Expect = 0.005, Method: Composition-based stats.
Identities = 58/230 (25%), Positives = 90/230 (39%), Gaps = 49/230 (21%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWER 197
+L T DGG W ++ + R + + F K GW+V + L T+D GE+W+R
Sbjct: 791 ILHTIDGGDYWEIQATT-------HQRCSGVHFLNAKSGWVVMEDGTSLLTTDGGENWKR 843
Query: 198 -IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLV---RGG-----GLFLSKGT 248
+ + + G A + V R W D G +L RG L KG
Sbjct: 844 DLEAARDIKG--ANFDIQLLTVKFRNHTEAWAVDSGHTILTTENRGKRWEAMDFLLDKGI 901
Query: 249 --GITEEFEEVPVQSRGFG----ILDVGYRSQDEAWAAGG-------------------- 282
G + + E V+ R FG I + W G
Sbjct: 902 TDGEAKSWTERMVEERPFGFSMRITNAHLLGDGHCWVVSGEQIFDRELSSADIGGSNESG 961
Query: 283 --SGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+G + TT+GGKTW + N V F++E+ G++ G++G+LL
Sbjct: 962 VSTGQIYATTDGGKTWHHQLGEQ--LDNFRDVLFLDEQNGWIAGDNGILL 1009
Score = 39.7 bits (91), Expect = 1.9, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 22/172 (12%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKP----AIL 185
G++ R +L T DGG TW + + ++ + F G+EGW V +
Sbjct: 736 GWIGVDRGQILRTSDGGITWTLQQTGTTQQPITHLHF----INGQEGWAVAPQRRSGGFI 791
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA-DGGLWLLVRGGGLFL 244
LHT D G+ WE + Q + F + GW + G LL GG
Sbjct: 792 LHTIDGGDYWEIQATTHQRCSGVHFLNAKS----------GWVVMEDGTSLLTTDGGENW 841
Query: 245 SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ E ++ + +L V +R+ EAWA +L T N GK W
Sbjct: 842 KRDL---EAARDIKGANFDIQLLTVKFRNHTEAWAVDSGHTILTTENRGKRW 890
Score = 37.7 bits (86), Expect = 6.7, Method: Composition-based stats.
Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 31/206 (15%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHT 188
G+ +G T+L T DGG TW + E I F + GWI G+ +LL T
Sbjct: 653 GWTVGDGGTILRTTDGGATWQTQRSGVTET------LQRIVFIDENYGWITGQ-GVLLRT 705
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT 248
+ GE+W + G F R I+ + + W+ V G + +
Sbjct: 706 ENGGETWHVVR-----EGLKNF---------RNIRAIHFINPKEGWIGVDRGQILRTSDG 751
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAG----GSGVLLKTTNGGKTWIREKAADN 304
GIT ++ + L + + E WA G +L T +GG W +
Sbjct: 752 GITWTLQQTGTTQQPITHLH--FINGQEGWAVAPQRRSGGFILHTIDGGDYWEIQATTHQ 809
Query: 305 IAANLYSVKFINEKKGFVLGNDGVLL 330
+ V F+N K G+V+ DG L
Sbjct: 810 RCS---GVHFLNAKSGWVVMEDGTSL 832
>gi|385811684|ref|YP_005848080.1| hypothetical protein IALB_3109 [Ignavibacterium album JCM 16511]
gi|383803732|gb|AFH50812.1| Hypothetical protein IALB_3109 [Ignavibacterium album JCM 16511]
Length = 430
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 102/233 (43%), Gaps = 50/233 (21%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
L+T DGG TW IP E F S+ F ++ ++G +T++ G +W
Sbjct: 101 FLKTVDGGATWVKELIPIESE-----FFRSVFFLNEQVGLIGD-RFTYYTTNGGINWNLS 154
Query: 199 PLSSQLPGDMAFWQPH------NRAVARRIQNMG--WRA-DGG---------------LW 234
S + ++ F Q A + N G W+ DGG ++
Sbjct: 155 QRDSDIVANLPFLQIQMLNDSLGFACGGVLDNAGIIWKTTDGGRNWKTNGISPDEIFEIF 214
Query: 235 LL--------------VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
+ + G GL S G T +EE+P+ + FGI +R++ E W+A
Sbjct: 215 IFDSLNILALSGDPEYLYGVGLIKSTDGGETWSYEELPINAVCFGI---DFRNELEGWSA 271
Query: 281 GGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
G L T +GG +W A D ++ +Y V+F+N+K GF G DGVLL+Y+
Sbjct: 272 AGFK-FLYTLDGGISWSEMNAPD--SSVVYDVQFVNDKNGFACGQDGVLLKYI 321
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 30/200 (15%)
Query: 117 LLDIAFVPDDLNH--GFLLGTRQTLLETKDGGKTWAPRSI-PSAEEEDFNY-RFNSISFK 172
L I + D L G +L + +T DGG+ W I P E F + N ++
Sbjct: 166 FLQIQMLNDSLGFACGGVLDNAGIIWKTTDGGRNWKTNGISPDEIFEIFIFDSLNILALS 225
Query: 173 GKEGWIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD 230
G ++ G L+ ++D GE+W E +P+++ G + R + GW A
Sbjct: 226 GDPEYLYGVG--LIKSTDGGETWSYEELPINAVCFG-----------IDFRNELEGWSAA 272
Query: 231 GGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTT 290
G +L GG+ S+ P S + DV + + +A G GVLLK
Sbjct: 273 GFKFLYTLDGGISWSE--------MNAPDSSV---VYDVQFVNDKNGFACGQDGVLLKYI 321
Query: 291 NGGKTWIREKAADNIAANLY 310
+E++++ + L+
Sbjct: 322 PDPNGIDKEESSNGMGYQLF 341
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 58/231 (25%)
Query: 84 LAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETK 143
L + G+Y QP W R+ P + L I F D LN G+ G T++ T
Sbjct: 10 LIFSIGIYSQPQ--------WVRIDSPTNN--FLRKIVFT-DSLN-GWACGLNGTIIHTS 57
Query: 144 DGGKTWAPRSIPSAEE-EDFNYRFNSISFKGKEGWI----VGKP---AILLHTSDAGESW 195
DGG W ++ +++ D ++ N ++GW + P + L T D G +W
Sbjct: 58 DGGDNWFIQNTNTSDPIIDIHFIDN------QKGWALIWELNTPPFGSYFLKTVDGGATW 111
Query: 196 --ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WLLVRGGGLFLSKGTGITE 252
E IP+ S+ + F + R + +GG+ W L + + + I
Sbjct: 112 VKELIPIESEFFRSVFFLNEQVGLIGDRFTY--YTTNGGINWNLSQ-------RDSDIVA 162
Query: 253 EFEEVPVQ----SRGF---GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ +Q S GF G+LD +G++ KTT+GG+ W
Sbjct: 163 NLPFLQIQMLNDSLGFACGGVLD-------------NAGIIWKTTDGGRNW 200
>gi|251772116|gb|EES52686.1| putative glycosyl hydrolase, BNR repeat [Leptospirillum
ferrodiazotrophum]
Length = 312
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 111/241 (46%), Gaps = 44/241 (18%)
Query: 108 YIPVDPGVV--LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS--IPSAEEEDFN 163
+ P++ G + +AFV D N G+ +G +L T DGGK+W+ +S IP
Sbjct: 57 WAPLNTGTTHWIHSVAFV--DPNRGWAVGNNGLILATTDGGKSWSTQSAGIP-------- 106
Query: 164 YRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRI 222
+ S++F + GW G LLHT+D GE+W ++ D A W + +
Sbjct: 107 FDLYSVTFLDDRNGWASGFAGTLLHTTDGGETWSKVST------DTAQW------IMKVF 154
Query: 223 QNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG 282
G + G W + + G + + G T + + PV+ +G+ + + W G
Sbjct: 155 FLKGDPSHG--WAVGQDGLILTTTDGGSTWKKQNNPVRKDLYGVT---FIDANRGWVVGT 209
Query: 283 SGVLLKTTNGGKTWIREK------------AADNIAANLYSVKFINEKKGFVLGNDGVLL 330
GV+ T NGG++WI + + + +L+SV F+N+K G+V G G+ L
Sbjct: 210 HGVIEFTANGGQSWIIQNGPGRPPLSWGVAGMERESNDLHSVVFVNDKVGYVTGVLGIFL 269
Query: 331 Q 331
+
Sbjct: 270 K 270
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 32/204 (15%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHT 188
G++ G +L T D GK WAP + + + +S++F GW VG ++L T
Sbjct: 38 GWVTGASGVILHTTDAGKNWAPLNTGTT------HWIHSVAFVDPNRGWAVGNNGLILAT 91
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD-GGLWLLVRGGGLFLSKG 247
+D G+SW S+ +P D+ +V GW + G L GG SK
Sbjct: 92 TDGGKSWST--QSAGIPFDL-------YSVTFLDDRNGWASGFAGTLLHTTDGGETWSKV 142
Query: 248 TGITEEFEEVPVQSRGFGILDVGYRSQD--EAWAAGGSGVLLKTTNGGKTWIREKAADNI 305
+ T ++ I+ V + D WA G G++L TT+GG TW +K + +
Sbjct: 143 STDTAQW-----------IMKVFFLKGDPSHGWAVGQDGLILTTTDGGSTW--KKQNNPV 189
Query: 306 AANLYSVKFINEKKGFVLGNDGVL 329
+LY V FI+ +G+V+G GV+
Sbjct: 190 RKDLYGVTFIDANRGWVVGTHGVI 213
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 108/229 (47%), Gaps = 28/229 (12%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
IP D L + F+ DD N G+ G TLL T DGG+TW+ S +A+ +
Sbjct: 105 IPFD----LYSVTFL-DDRN-GWASGFAGTLLHTTDGGETWSKVSTDTAQ-----WIMKV 153
Query: 169 ISFKGK--EGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQN 224
KG GW VG+ ++L T+D G +W++ P+ L G + F + V
Sbjct: 154 FFLKGDPSHGWAVGQDGLILTTTDGGSTWKKQNNPVRKDLYG-VTFIDANRGWVVGTHGV 212
Query: 225 MGWRADGGL-WLLVRGGGLF-LSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG 282
+ + A+GG W++ G G LS G E E + S F VGY G
Sbjct: 213 IEFTANGGQSWIIQNGPGRPPLSWGVAGMER-ESNDLHSVVFVNDKVGY-------VTGV 264
Query: 283 SGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G+ LKTT+GG TW R K+ N+ +LY + F + G+ +G G++L
Sbjct: 265 LGIFLKTTDGGNTWTRIKSGTNL--DLYGLTFPDNTHGWAVGVGGMILH 311
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 28/170 (16%)
Query: 166 FNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQN 224
F+ + F EGW+ G ++LHT+DAG++W PL++ W +VA N
Sbjct: 27 FDGVCFLTATEGWVTGASGVILHTTDAGKNWA--PLNTG----TTHWI---HSVAFVDPN 77
Query: 225 MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG--FGILDVGYRSQDEAWAAGG 282
GW V GL L+ T+ + QS G F + V + WA+G
Sbjct: 78 RGWA--------VGNNGLILAT----TDGGKSWSTQSAGIPFDLYSVTFLDDRNGWASGF 125
Query: 283 SGVLLKTTNGGKTWIREKAADNIAANLYSVKFI--NEKKGFVLGNDGVLL 330
+G LL TT+GG+TW K + + A + V F+ + G+ +G DG++L
Sbjct: 126 AGTLLHTTDGGETW--SKVSTDTAQWIMKVFFLKGDPSHGWAVGQDGLIL 173
>gi|5139322|emb|CAB45637.1| hypothetical protein [Nostoc sp. PCC 7120]
Length = 100
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 9/102 (8%)
Query: 78 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+L + L G + P+ S + W V +P + LLDIAF ++ HGFL+G+
Sbjct: 8 FTLLVVLLLCIGCSKVPSTS---YNPWAVVSLPTEAK--LLDIAFT-ENPQHGFLVGSSA 61
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV 179
T LET DGG W P ++ +D YRF+S+SF GKEGWIV
Sbjct: 62 TCLETNDGGNNWQPLNL---ALDDDRYRFDSVSFAGKEGWIV 100
>gi|325102759|ref|YP_004272413.1| hypothetical protein [Pedobacter saltans DSM 12145]
gi|324971607|gb|ADY50591.1| hypothetical protein Pedsa_0002 [Pedobacter saltans DSM 12145]
Length = 364
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 23/224 (10%)
Query: 106 RVYIPVDPGV--VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
+ Y+ ++ G L I F+ D G+ +G +T+L+T +GG TW+ ++ E+
Sbjct: 107 KTYLNLNSGTNQYLYHIKFINDLT--GYAVGNNKTILKTTNGGNTWSAINVSFYED---- 160
Query: 164 YRFNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPG--DMAFWQPHNRAVAR 220
F S+ F +E G+I G I+L TSD+G++W R+ + G M F +
Sbjct: 161 --FRSVYFVNEEMGFITGSNGIILRTSDSGKTWLRVYSGTYGEGVYGMCFLDNKKGYASG 218
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
R GGL L GG+ + + E+ + F D GY
Sbjct: 219 R---------GGLILKTIDGGISWNAQPNLPFLDEQHILTFIHFTDKDNGYIVGGIPTGY 269
Query: 281 GGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
GS VLL+T NGG++W R + +I L ++KF ++ G+++G
Sbjct: 270 NGSSVLLRTFNGGESWQRVQLPISIDY-LTAIKFADKNVGYIIG 312
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
V + +Q + G +G++LKTT+GGKT++ + N LY +KFIN+ G+ +GN+
Sbjct: 82 VYFVNQQTGYICGENGIILKTTDGGKTYLNLNSGTN--QYLYHIKFINDLTGYAVGNNKT 139
Query: 329 LLQ 331
+L+
Sbjct: 140 ILK 142
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 35/174 (20%)
Query: 166 FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSS-------QLPGDMAFWQPHNRA 217
F S+ F ++ G+I G+ I+L T+D G+++ + + + D+ + N
Sbjct: 79 FTSVYFVNQQTGYICGENGIILKTTDGGKTYLNLNSGTNQYLYHIKFINDLTGYAVGNNK 138
Query: 218 VARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEA 277
+ N GG + + E+F V + +++
Sbjct: 139 TILKTTN--------------GGNTWSAINVSFYEDFRSVY------------FVNEEMG 172
Query: 278 WAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+ G +G++L+T++ GKTW+R + +Y + F++ KKG+ G G++L+
Sbjct: 173 FITGSNGIILRTSDSGKTWLRVYSG-TYGEGVYGMCFLDNKKGYASGRGGLILK 225
>gi|159898546|ref|YP_001544793.1| hypothetical protein Haur_2022 [Herpetosiphon aurantiacus DSM 785]
gi|159891585|gb|ABX04665.1| conserved hypothetical protein [Herpetosiphon aurantiacus DSM 785]
Length = 897
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 33/218 (15%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
L +AF P+ +HG+ +G +L T++GG+TW +S ++ + G G
Sbjct: 103 LYGVAFAPN-ASHGWAVGDDGIILTTQNGGETWQTQSSGLHQQ-----LARCSTADGVHG 156
Query: 177 WIVGKPAILLHTSDAGESWER--IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
W VG ++L T+DAG++W++ P S+ L A N+ VA W
Sbjct: 157 WAVGHGGVILVTNDAGQTWQQQTSPTSNDLRSVFAV----NQQVA--------------W 198
Query: 235 LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGK 294
++ R G + ++ G T P +GI V S+ AW +G G +T + G+
Sbjct: 199 IVGRAGTVLITNDAGQTWNPVHTPSNKDFYGI--VADASECAAWISGDDGSFYRTHDAGQ 256
Query: 295 TW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
TW + K + ++ A S ++ G+ +G+DG+++
Sbjct: 257 TWQAQQSKTSKDLVALASSRDLLH---GWAVGDDGIII 291
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 31/233 (13%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
DL HG+ +G ++ T D G W + + A+++ F+ G+ GW VG +
Sbjct: 277 DLLHGWAVGDDGIIISTNDHGNHWQIQ-LNGADQQLMALTFDQ---HGQTGWAVGHAGTI 332
Query: 186 LHTSDAGESWERI------PLSSQL--PGDMAFWQ--PHNRAVARRIQNMGWRADG---- 231
+HT+D G SW PL + P W H +A W+
Sbjct: 333 IHTTDYGRSWRTQTSGVAQPLWAVCSNPTGTIGWAVGSHGTILATTDAGKSWQQQRSPSS 392
Query: 232 ----GLWLLVRGGGLFL-SKGTGITEEFEEVPVQSR--GFGILD---VGYRSQDEA-WAA 280
G+W + + G + + GT ++ + + GFG+ D + + + +A W
Sbjct: 393 VNYYGMWFINQQVGWIVGAAGTVLSTHNAGRDWRQKLLGFGVADYYAISFSADGQAGWIV 452
Query: 281 GGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
G G +L T N G+TW ++ +A + A L +++ +N+++ ++ G++G LLQ +
Sbjct: 453 GAHGTILATNNAGQTWHQQPSACDAA--LLAIQIVNQQEVWICGSNGTLLQTI 503
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 28/196 (14%)
Query: 102 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED 161
++W++ D + LD A D HG+ +G T+L T DGG +W + A D
Sbjct: 714 ASWQQAPFATDQILWGLDFA----DAQHGWAVGDHGTILATTDGGASWQIQ----ASGCD 765
Query: 162 FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARR 221
N+ WI G +LH+ DAG SW+ P +Q +
Sbjct: 766 KNFAAIHCQPTSTHSWIAGDRGTILHSRDAGGSWQLQPTPTQ----------------KH 809
Query: 222 IQNMGWRADGGL-WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
+ + + DG W + R + +++ G T + + G + V S W
Sbjct: 810 LAAVHFLPDGQTGWAVGRSDTILMTRDAGNTWHQQST---TTGMSLWGVHGLSSSHYWVI 866
Query: 281 GGSGVLLKTTNGGKTW 296
G G + T + G +W
Sbjct: 867 GDEGTICATNDAGLSW 882
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 25/175 (14%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTS 189
G+ +G+ T+L T D GK+W + PS+ NY + + GWIVG +L T
Sbjct: 365 GWAVGSHGTILATTDAGKSWQQQRSPSS----VNY-YGMWFINQQVGWIVGAAGTVLSTH 419
Query: 190 DAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WLLVRGGGLFLSKGT 248
+AG W + L + A + + ADG W++ G + +
Sbjct: 420 NAGRDWRQKLLGFGVADYYA---------------ISFSADGQAGWIVGAHGTILATNNA 464
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAAD 303
G T + + +L + +Q E W G +G LL+T + G +W ++ A D
Sbjct: 465 GQTWHQQPSACDA---ALLAIQIVNQQEVWICGSNGTLLQTIDAGNSW-QQHACD 515
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 40/221 (18%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE-----DFNYRFNSISF 171
LL + F D G+ +G T+L T DGG +W + P A ++ DF
Sbjct: 686 LLAVYFA--DAQRGWAVGDHGTILATTDGGASW--QQAPFATDQILWGLDF--------A 733
Query: 172 KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG-DMAFWQPHNRAVARRIQNMGWRAD 230
+ GW VG +L T+D G SW+ Q G D F H + +
Sbjct: 734 DAQHGWAVGDHGTILATTDGGASWQI-----QASGCDKNFAAIHCQPTSTH--------- 779
Query: 231 GGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDE-AWAAGGSGVLLKT 289
W+ G + S+ G + + + P Q + V + + WA G S +L T
Sbjct: 780 --SWIAGDRGTILHSRDAGGSWQLQPTPTQKH---LAAVHFLPDGQTGWAVGRSDTILMT 834
Query: 290 TNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+ G TW ++ ++ L+ V ++ +V+G++G +
Sbjct: 835 RDAGNTWHQQSTTTGMS--LWGVHGLSSSHYWVIGDEGTIC 873
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 21/155 (13%)
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WL 235
WIVG +L + D G +W ++Q+ A + + + + DG + W+
Sbjct: 573 WIVGDGGTVLTSPDRGTTW-----TAQVS-----------ATGKNLYGIDFVPDGQIGWI 616
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
+ GG LF + + + P+ + I +G + +AWA G G ++ T++ G +
Sbjct: 617 VGDGGSLFSKQASATSLRVHSSPIIKNLYAIHSLGDGT--KAWAVGREGSIIHTSDAGHS 674
Query: 296 WIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
WI + + +++L +V F + ++G+ +G+ G +L
Sbjct: 675 WIVQP--NPCSSDLLAVYFADAQRGWAVGDHGTIL 707
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 86/219 (39%), Gaps = 33/219 (15%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
L I FVPD G+++G +L + + S P + Y +S+ G +
Sbjct: 602 LYGIDFVPDG-QIGWIVGDGGSLFSKQASATSLRVHSSPIIKNL---YAIHSLG-DGTKA 656
Query: 177 WIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR-ADGGL 233
W VG+ ++HTSDAG SW + P SS L AV GW D G
Sbjct: 657 WAVGREGSIIHTSDAGHSWIVQPNPCSSDL-----------LAVYFADAQRGWAVGDHGT 705
Query: 234 WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGG 293
L GG +++ P + + + + WA G G +L TT+GG
Sbjct: 706 ILATTDGG----------ASWQQAPFATDQI-LWGLDFADAQHGWAVGDHGTILATTDGG 754
Query: 294 KTW-IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+W I+ D A ++ ++ G+ G +L
Sbjct: 755 ASWQIQASGCDKNFAAIHCQP--TSTHSWIAGDRGTILH 791
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 25/157 (15%)
Query: 176 GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVA--RRIQNMGWRADGGL 233
GW VG +++ T++ G SW++ ++ + D+ RAV R+
Sbjct: 33 GWAVGDGGLIVSTNNGGTSWQQHEVTEK---DL-------RAVTFINRLHG--------- 73
Query: 234 WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGG 293
W + R G + + G++ + + + +G+ S WA G G++L T NGG
Sbjct: 74 WAVGRDGIIIATNDAGVSWQQQASGSEHNLYGVAFAPNAS--HGWAVGDDGIILTTQNGG 131
Query: 294 KTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+TW + + + L + G+ +G+ GV+L
Sbjct: 132 ETW--QTQSSGLHQQLARCSTADGVHGWAVGHGGVIL 166
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
S +A +W+ P L + F+PD G+ +G T+L T+D G TW +S
Sbjct: 791 HSRDAGGSWQLQPTPTQKH--LAAVHFLPDGQT-GWAVGRSDTILMTRDAGNTWHQQSTT 847
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWE 196
+ + +S + W++G + T+DAG SW+
Sbjct: 848 TGMSLWGVHGLSSSHY-----WVIGDEGTICATNDAGLSWQ 883
>gi|284097458|ref|ZP_06385557.1| glycosyl hydrolase, BNR repeat [Candidatus Poribacteria sp. WGA-A3]
gi|283831035|gb|EFC35046.1| glycosyl hydrolase, BNR repeat [Candidatus Poribacteria sp. WGA-A3]
Length = 359
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 33/219 (15%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS----IPSAEEEDFNYRFNSISFK 172
L +I FV D N G++ G R T+L+T+DGGKTW+ ++ P + R N + +
Sbjct: 111 LYNIYFV--DENVGYITGGRATILKTEDGGKTWSRKTAMSDTPGRDGRPGRLRANLMGIQ 168
Query: 173 ---GKEGWIVGKPAILLHTSDAGESW----ERIPLSSQLPGDMAFWQPHNRAVARRIQNM 225
G+I G +L T+D GE+W ER + ++N+
Sbjct: 169 MISETTGFIAGSENTILKTTDGGETWIGSSERARVGE---------------TRNNLENI 213
Query: 226 GWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
+ +D W++ G L + G T E + + FGI + ++ W +G G+
Sbjct: 214 WFVSDTTGWVIGSFGTLLHTADGGETWEKRDPGFDNNLFGIY---FHDENTGWISGQEGL 270
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
+L TT+GG TW ++K +L+ + F++ G+ +G
Sbjct: 271 ILHTTDGGATWNQQKTES--YDDLHDIIFVDAMVGWAVG 307
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 27/206 (13%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTS 189
GF+ G+ T+L+T DGG+TW S + E N N GW++G LLHT+
Sbjct: 175 GFIAGSENTILKTTDGGETWIGSSERARVGETRNNLENIWFVSDTTGWVIGSFGTLLHTA 234
Query: 190 DAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW-RADGGLWLLVRGGGLFLSKGT 248
D GE+WE+ + PG + + + +N GW GL L GG ++
Sbjct: 235 DGGETWEK-----RDPG----FDNNLFGIYFHDENTGWISGQEGLILHTTDGGATWNQQK 285
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNI--A 306
TE ++++ D+ + WA GG +L TT+GG+TW NI +
Sbjct: 286 --TESYDDLH---------DIIFVDAMVGWAVGGFNSVLHTTDGGQTW----TVSNIPGS 330
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQY 332
ANL V + + + + GV+ Y
Sbjct: 331 ANLKGVHATDANNCWTVNDWGVIAGY 356
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 43/168 (25%)
Query: 174 KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL 233
+ G +VG ++L TSD G +WE++ + + PG AR+ A G
Sbjct: 52 QNGLVVGDNGLMLMTSDGGTTWEKMEVDMRPPG------------ARQRPGGPPGAGGPP 99
Query: 234 WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGG 293
+ GGG P+ + F +VGY GG +LKT +GG
Sbjct: 100 AGMFGGGG--------------ASPLYNIYFVDENVGY-------ITGGRATILKTEDGG 138
Query: 294 KTWIREKAADN----------IAANLYSVKFINEKKGFVLGNDGVLLQ 331
KTW R+ A + + ANL ++ I+E GF+ G++ +L+
Sbjct: 139 KTWSRKTAMSDTPGRDGRPGRLRANLMGIQMISETTGFIAGSENTILK 186
>gi|408421597|ref|YP_006763011.1| hypothetical protein TOL2_C41510 [Desulfobacula toluolica Tol2]
gi|405108810|emb|CCK82307.1| uncharacterized protein, BNR repeat [Desulfobacula toluolica Tol2]
Length = 325
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 24/173 (13%)
Query: 125 DDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI 184
+D HG+++G T+L T+DGG W + P E+ F+ FN + GWI G
Sbjct: 169 NDTEHGWIVGEFGTILYTEDGGLNWMEQKNPLGEKTLFSVCFNDRT----NGWIAGMDGS 224
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
+L T D+G++W I S N + ++N GW + ++G L
Sbjct: 225 ILKTVDSGKTWTAIKSSI----------TENLMCIQVVRNNGWV------IGLKGAYGML 268
Query: 245 SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI 297
KG +E VP ++ + D + + W G G LL T +GGKTW
Sbjct: 269 GKGM-WNDETHRVPTRAW---LNDCVFVDEKTGWLVGSVGTLLHTLDGGKTWF 317
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 30/212 (14%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE- 175
L ++FV + G++ G + T+DGGKTW ++ + + S++FK E
Sbjct: 81 LYSVSFV--NAQKGWVCGQNGQIAHTRDGGKTWQVQTSGTKQ------HLFSLTFKNAEK 132
Query: 176 GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
GW VG +LHTSD G +W N + N+ + W+
Sbjct: 133 GWAVGDFGTILHTSDGGRNW----------------HVQNEKTDKIYNNIYFNDTEHGWI 176
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
+ G + ++ G+ ++ P+ + + V + + W AG G +LKT + GKT
Sbjct: 177 VGEFGTILYTEDGGLNWMEQKNPLGEKT--LFSVCFNDRTNGWIAGMDGSILKTVDSGKT 234
Query: 296 WIREKAADNIAANLYSVKFINEKKGFVLGNDG 327
W K++ I NL ++ + G+V+G G
Sbjct: 235 WTAIKSS--ITENLMCIQVV-RNNGWVIGLKG 263
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
+ V + + + W G +G + T +GGKTW + + +L+S+ F N +KG+ +G+
Sbjct: 81 LYSVSFVNAQKGWVCGQNGQIAHTRDGGKTWQVQTSG--TKQHLFSLTFKNAEKGWAVGD 138
Query: 326 DGVLLQ 331
G +L
Sbjct: 139 FGTILH 144
>gi|440749951|ref|ZP_20929196.1| CHU large protein [Mariniradius saccharolyticus AK6]
gi|436481671|gb|ELP37833.1| CHU large protein [Mariniradius saccharolyticus AK6]
Length = 936
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 119 DIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWI 178
DIAF + G++ G T+L T + G W + P + F F G+
Sbjct: 365 DIAFTTNAF--GYISGDEGTILRTSNSGANWTSLN-PGTTDPILGLFF----FNNTNGFA 417
Query: 179 VGKPAILLHTSDAGESWERIPL--SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WL 235
VG + T D+G SW++I + +++L D+ F+ + V + W DGGL W
Sbjct: 418 VGNNGFMARTVDSGVSWQKISVNNTTRLLRDVHFFDLNEGFVFGESGFIAWTNDGGLTW- 476
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
+ RGF +LD A G +G +LK+T+ GK+
Sbjct: 477 ---------------QNAVNPIAQNLRGFSVLDT-----QTALVVGDNGTVLKSTDRGKS 516
Query: 296 WIREKAADNIA--ANLYSVKFINEKKGFVLGNDGVLLQ 331
W +A NI NL S F++E GF+ G +G+++
Sbjct: 517 W----SAINIGETTNLRSAHFLDESIGFLAGENGLMMN 550
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 32/233 (13%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
+W PV + LD F ++L G ++G + T +GG+TW+ +P+ +
Sbjct: 61 SWTEQLAPVKTHMHGLD--FFNENL--GLMVGENGQVFRTTNGGETWSLIKLPTDKT--- 113
Query: 163 NYRFNSISFKGK-EGWIVGKPAILLHTSDAGESWERIPLSSQLP-GDMAFWQPHNRAVAR 220
S+ F + +IVG+ + ++++G SW + + S + M F VA
Sbjct: 114 ---LRSVQFLNQTRVYIVGESGEVYRSTNSGSSWAKQSVGSTVNLNGMHFANADTGYVAA 170
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
ADG + G + TG QS G DV + + +A
Sbjct: 171 --------ADGRILRTFNSGNNWAFVNTG----------QSNGLN--DVYFTNAKNGYAI 210
Query: 281 GGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
G G +L++T+ G+TW + + N + N G VLG+ G L+ +
Sbjct: 211 GQLGTILRSTDAGQTWTQVTSGTERNLNTVAFNRTNPLLGVVLGDTGTSLRTI 263
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 44/240 (18%)
Query: 95 AKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI 154
A+S + + AW +D V I FV D Q +L+T DGG +W +
Sbjct: 20 AQSWKRVGAWGNRLTGID--WVTEQIGFVSGD----------QIILKTIDGGLSWTEQLA 67
Query: 155 PSAEEE---DFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFW 211
P DF F G +VG+ + T++ GE+W I +LP D
Sbjct: 68 PVKTHMHGLDF--------FNENLGLMVGENGQVFRTTNGGETWSLI----KLPTDKTL- 114
Query: 212 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGY 271
R +Q + ++++ G ++ S +G + + V G+ +
Sbjct: 115 --------RSVQFLNQTR---VYIVGESGEVYRSTNSGSSWAKQSVGSTVNLNGMH---F 160
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+ D + A G +L+T N G W + L V F N K G+ +G G +L+
Sbjct: 161 ANADTGYVAAADGRILRTFNSGNNWAFVNTGQ--SNGLNDVYFTNAKNGYAIGQLGTILR 218
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 95 AKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI 154
A++ ++ +W+++ + + +L D+ F DLN GF+ G + T DGG TW
Sbjct: 425 ARTVDSGVSWQKISVN-NTTRLLRDVHFF--DLNEGFVFGESGFIAWTNDGGLTWQNAVN 481
Query: 155 PSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPL 200
P A+ N R S+ + +VG +L ++D G+SW I +
Sbjct: 482 PIAQ----NLRGFSV-LDTQTALVVGDNGTVLKSTDRGKSWSAINI 522
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 89/206 (43%), Gaps = 33/206 (16%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTS 189
G++ +L T + G WA + + + Y N+ K G+ +G+ +L ++
Sbjct: 166 GYVAAADGRILRTFNSGNNWAFVNTGQSNGLNDVYFTNA-----KNGYAIGQLGTILRST 220
Query: 190 DAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKG 247
DAG++W ++ ++ R + + + L +V G G +
Sbjct: 221 DAGQTWTQVTSGTE----------------RNLNTVAFNRTNPLLGVVLGDTGTSLRTIN 264
Query: 248 TGITEEFEEVPVQSRGFGILDVGYR-SQDEAWAAGGSGVLLKTTNGGKTWIREKA--ADN 304
G T + +P +L V +R + + +A G +GV++ +TN G +W + A +
Sbjct: 265 GGTTFDGINIPTTQT---LLSVDFRFTSNIVYAVGTNGVIISSTNSGGSWTVRLSGFAKD 321
Query: 305 IAANLYSVKFINEKKGFVLGNDGVLL 330
A L+ + G+++G DG++L
Sbjct: 322 YTATLFRTGVL----GYIIGEDGLVL 343
>gi|302037060|ref|YP_003797382.1| hypothetical protein NIDE1725 [Candidatus Nitrospira defluvii]
gi|300605124|emb|CBK41457.1| conserved exported protein of unknown function, contains BNR
repeats [Candidatus Nitrospira defluvii]
Length = 322
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 28/230 (12%)
Query: 106 RVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYR 165
R + V G L A D G+++G T+ ++DGG+TW+ + S + +
Sbjct: 70 RKWKKVSSGTTSLLTAVYFQDARRGWVVGANGTVRTSRDGGETWSVVFV-STQAPLYGIA 128
Query: 166 FNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNM 225
F ++GW+VG +L T+D GE+W + Q G A H+ + +
Sbjct: 129 F----VTPQKGWLVGGNGTILRTTDGGENW-----TDQASGTSA--ALHSIVLTNQQHGA 177
Query: 226 GWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
+V G L+ G +V S F DV + + WA G +G
Sbjct: 178 ----------IVGALGTILTTSDGGATWTPQVSQSSATF--FDVAFADEVNGWAVGNAGA 225
Query: 286 LLKTTNGGKTWIREKA----ADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L +TT+GG WI N +L V+F + ++G+++G G +L+
Sbjct: 226 LFQTTDGGTHWIDRTLPCGRTCNKLTDLIRVRFTDAQQGWIVGEHGQILR 275
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 21/155 (13%)
Query: 176 GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
GW VG +L T+D G W+++ + ++Q R W+
Sbjct: 53 GWAVGSGGTILKTTDGGRKWKKVSSGTTSLLTAVYFQDARRG----------------WV 96
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
+ G + S+ G T V Q+ +GI + + + W GG+G +L+TT+GG+
Sbjct: 97 VGANGTVRTSRDGGETWSVVFVSTQAPLYGI---AFVTPQKGWLVGGNGTILRTTDGGEN 153
Query: 296 WIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
W + A +A L+S+ N++ G ++G G +L
Sbjct: 154 WTDQ--ASGTSAALHSIVLTNQQHGAIVGALGTIL 186
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK-GKE 175
D+AF D++N G+ +G L +T DGG W R++P + + F ++
Sbjct: 206 FFDVAFA-DEVN-GWAVGNAGALFQTTDGGTHWIDRTLPCGRTCNKLTDLIRVRFTDAQQ 263
Query: 176 GWIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGG 232
GWIVG+ +L T+DAG +W E P+ L MA PH +GW A G
Sbjct: 264 GWIVGEHGQILRTTDAGFNWVEEASPVKRSL---MALSFPHT--------TVGWAAGEG 311
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
+L + + WA G G +LKTT+GG+ W +K + + L +V F + ++G+V+G
Sbjct: 42 LLGMFFHDPQLGWAVGSGGTILKTTDGGRKW--KKVSSGTTSLLTAVYFQDARRGWVVGA 99
Query: 326 DGVL 329
+G +
Sbjct: 100 NGTV 103
>gi|427401876|ref|ZP_18892948.1| hypothetical protein HMPREF9710_02544 [Massilia timonae CCUG 45783]
gi|425719298|gb|EKU82233.1| hypothetical protein HMPREF9710_02544 [Massilia timonae CCUG 45783]
Length = 385
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 38/205 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G T+L ++D GKTW +P + + ++ F G K W VG ++L + DA
Sbjct: 74 VGVHGTILVSQDAGKTWKQAVVPVSSD------LTNVRFSGPKLAWAVGHDGVVLRSLDA 127
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G++W R+ L +A H RA MG ++ I
Sbjct: 128 GQTWTRVLDGRTL---LAVLDKHYRAQV----AMG-----------------VADAAAIV 163
Query: 252 EEFEEVPVQSRGFGIL-----DVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADN 304
+E S G+L D+ + E + AG G+LL+T +GGKTW EKA ++
Sbjct: 164 DEVARAAALSATPGVLPYPFLDIRIGADGEGFVAGAFGLLLRTGDGGKTWEPWLEKAGND 223
Query: 305 IAANLYSVKFINEKKGFVLGNDGVL 329
+LY+++ + K ++ G G+L
Sbjct: 224 RRMHLYALEQTADGKLYLAGEQGLL 248
>gi|383783677|ref|YP_005468244.1| glycosyl hydrolase [Leptospirillum ferrooxidans C2-3]
gi|383082587|dbj|BAM06114.1| glycosyl hydrolase, BNR repeat [Leptospirillum ferrooxidans C2-3]
Length = 334
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 38/216 (17%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHT 188
G+++G + T+L T DGGKTW P + + +++F EG+ G LLHT
Sbjct: 98 GWIVGNQGTILTTDDGGKTWVP------QNSGVRFDLYTVTFLNPTEGFAGGFAGTLLHT 151
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR-ADGGLWLLVRGGGLFLSKG 247
+D G +W+++ D A W + N GW GL L+ GG SK
Sbjct: 152 TDGGATWKKVST------DTAQWIMSIFFLKSNPSN-GWAVGQDGLVLVTTDGGATWSK- 203
Query: 248 TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI---------- 297
+ PV +G+ + WA G G++ ++NGG +W
Sbjct: 204 -------KRNPVGKDLYGVY---FSDATHGWAVGTHGIIEFSSNGGISWSIQNGMGVGPL 253
Query: 298 -REKAADNIAAN-LYSVKFINEKKGFVLGNDGVLLQ 331
R D N L+++ F+++K G+ +G G+LL+
Sbjct: 254 GRGIEGDERELNDLHAITFVDDKTGYAVGVMGILLK 289
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 22/232 (9%)
Query: 106 RVYIPVDPGVV--LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAE--EED 161
+ ++P + GV L + F+ + GF G TLL T DGG TW S +A+
Sbjct: 115 KTWVPQNSGVRFDLYTVTFL--NPTEGFAGGFAGTLLHTTDGGATWKKVSTDTAQWIMSI 172
Query: 162 FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVA 219
F + N GW VG+ ++L T+D G +W +R P+ L G H AV
Sbjct: 173 FFLKSNP-----SNGWAVGQDGLVLVTTDGGATWSKKRNPVGKDLYGVYFSDATHGWAVG 227
Query: 220 RRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
+ + ++GG+ ++ G G GI + E+ + + + +A
Sbjct: 228 TH-GIIEFSSNGGISWSIQNGMGVGPLGRGIEGDERELN------DLHAITFVDDKTGYA 280
Query: 280 AGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G+LLKTT+GG W + + +LY++ F G+++G G++L
Sbjct: 281 VGVMGILLKTTDGGNHWSLIPSGTGL--DLYNISFQGPGSGWIVGVGGMILH 330
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 24/176 (13%)
Query: 158 EEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNR 216
+ D + FN +SF EGW+ G +LHTSD+G++W ++Q+ G
Sbjct: 38 DSLDISIPFNGLSFVSPSEGWVTGASGSILHTSDSGKTW-----TAQVSG---------- 82
Query: 217 AVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDE 276
+Q+ + + W++ G + + G T + V+ F + V + + E
Sbjct: 83 -TTHWLQSAAFVSPTKGWIVGNQGTILTTDDGGKTWVPQNSGVR---FDLYTVTFLNPTE 138
Query: 277 AWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI--NEKKGFVLGNDGVLL 330
+A G +G LL TT+GG TW +K + + A + S+ F+ N G+ +G DG++L
Sbjct: 139 GFAGGFAGTLLHTTDGGATW--KKVSTDTAQWIMSIFFLKSNPSNGWAVGQDGLVL 192
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 36/206 (17%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHT 188
G++ G ++L T D GKTW +A+ + S +F +GWIVG +L T
Sbjct: 57 GWVTGASGSILHTSDSGKTW------TAQVSGTTHWLQSAAFVSPTKGWIVGNQGTILTT 110
Query: 189 SDAGESWERIPLSSQLPGDM---AFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS 245
D G++W +P +S + D+ F P + DGG
Sbjct: 111 DDGGKTW--VPQNSGVRFDLYTVTFLNPTEGFAGGFAGTLLHTTDGG------------- 155
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQD--EAWAAGGSGVLLKTTNGGKTWIREKAAD 303
+++V + + I+ + + + WA G G++L TT+GG TW +++ +
Sbjct: 156 ------ATWKKVSTDTAQW-IMSIFFLKSNPSNGWAVGQDGLVLVTTDGGATWSKKR--N 206
Query: 304 NIAANLYSVKFINEKKGFVLGNDGVL 329
+ +LY V F + G+ +G G++
Sbjct: 207 PVGKDLYGVYFSDATHGWAVGTHGII 232
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA------ 150
+ + + W + PV G L + F D HG+ +GT + + +GG +W+
Sbjct: 194 TTDGGATWSKKRNPV--GKDLYGVYF--SDATHGWAVGTHGIIEFSSNGGISWSIQNGMG 249
Query: 151 ----PRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPLSSQL 204
R I +E + N ++I+F K G+ VG ILL T+D G W IP + L
Sbjct: 250 VGPLGRGI-EGDERELN-DLHAITFVDDKTGYAVGVMGILLKTTDGGNHWSLIPSGTGL 306
>gi|308273929|emb|CBX30529.1| hypothetical protein N47_K27690 [uncultured Desulfobacterium sp.]
Length = 260
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 40/219 (18%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D HG+++G+ T+L T DGG+TW P+ ++ NY F ++GWIVG+ +
Sbjct: 16 DAGHGWVVGSNGTILATSDGGRTWKPQVSGTS-----NYLFGVCFVNPQKGWIVGEAGTI 70
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS 245
LHT D G W+ +Q G+ A+ ++ + + G + G L S
Sbjct: 71 LHTQDGGAHWQ-----AQQSGE-------TEALLEAVKFLDEKR--GFIVGEFGSILVTS 116
Query: 246 KGTGITEEFEEVPVQSRGFGILDVG-------------YRSQDEAWAAGGSGVLLKTTNG 292
G I + + R ILD+G ++ A G G +L+T +G
Sbjct: 117 DGGAIWK-----CITKREADILDIGSLGKTRPTLYSLDFQDDKTGVAVGVGGCILRTQDG 171
Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G+TW + +LY VK ++ + + G G LL+
Sbjct: 172 GETW--QDVPSPTVNHLYRVKVLDGEI-YATGLRGTLLK 207
>gi|150025537|ref|YP_001296363.1| hypothetical protein FP1481 [Flavobacterium psychrophilum JIP02/86]
gi|149772078|emb|CAL43554.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 334
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 31/203 (15%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRS--IPSAEEEDFNYRFNSISFKGKEGWIVGKPA 183
D N+G +G + L T +GG TW ++ + S+ + Y +N+ + + G
Sbjct: 149 DANNGVCVGAKGILRTTTNGGATWEVKNSGLTSSTDLRAVYIYNATTI-----IVCGSNG 203
Query: 184 ILLHTSDAGESWERIPLSSQLP-GDMAFWQPHNRAVARRIQNMGWRA-DGGLWLLVRGGG 241
+L ++D G +W I + DM F I N+G+ G+ L +
Sbjct: 204 VLRRSNDFGLTWGVITTQETVRLQDMHF----------PIANIGYICGQEGVVLKIN--- 250
Query: 242 LFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKA 301
L+ T +T+++ V Q R + + ++ + +G G LLKTTNGG+ W + +
Sbjct: 251 --LTDNT-VTKQYLPVDEQMRA-----IYFVNEQIGYTSGSYGDLLKTTNGGQNW-KLQN 301
Query: 302 ADNIAANLYSVKFINEKKGFVLG 324
D IA NLYS+ F EK+G++ G
Sbjct: 302 IDPIAYNLYSIDFPTEKQGYIAG 324
>gi|386821653|ref|ZP_10108869.1| BNR/Asp-box repeat protein [Joostella marina DSM 19592]
gi|386426759|gb|EIJ40589.1| BNR/Asp-box repeat protein [Joostella marina DSM 19592]
Length = 1238
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 45/236 (19%)
Query: 100 ALSAWERVYIPVDPGVVLLD---IAFVPDDLNHGFLLGTRQTLLETKDGGKTW-APRSIP 155
A S+WE + +P +LD I F D +G++L + LL T DGG+TW ++I
Sbjct: 19 AQSSWELL----NPKPTILDGEGITFSSD--TNGYILNNEE-LLHTDDGGETWNIKQNID 71
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
S N I+ K G+IVG +L T+D G +W +I ++S
Sbjct: 72 SG---------NDIAIKNTTGYIVGDYGYVLKTTDGGVNWSKININSG------------ 110
Query: 216 RAVARRIQNMG--WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGF-GILDVGYR 272
QN+G + D +V G +L K +E V + I D+ +
Sbjct: 111 -------QNLGKVYIVDDN--TVVISGERYLYKTLNNGNTWESYSVNPDNYNSIQDLFFI 161
Query: 273 SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
+ G++ KT +GG TW A DN +N + + F N+ G V +G+
Sbjct: 162 DSLTGYVVFRDGIVYKTIDGGTTWTESLAMDNYNSNAF-IHFFNDLSGVVSNGNGI 216
Score = 45.4 bits (106), Expect = 0.041, Method: Composition-based stats.
Identities = 63/272 (23%), Positives = 112/272 (41%), Gaps = 40/272 (14%)
Query: 67 NRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDD 126
N +Q + +++ + G Y K+ + W + I ++ G L + V D+
Sbjct: 65 NIKQNIDSGNDIAIKNTTGYIVGDYGYVLKTTDGGVNWSK--ININSGQNLGKVYIVDDN 122
Query: 127 LNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILL 186
++ + L +T + G TW S+ +++N + G++V + I+
Sbjct: 123 T---VVISGERYLYKTLNNGNTWESYSV---NPDNYNSIQDLFFIDSLTGYVVFRDGIVY 176
Query: 187 HTSDAGESWERIPLSSQLPGDMAFWQPHN--RAVARRIQNMGWRADGGL-WLLVRGGGLF 243
T D G +W L+ AF N V + DGG W LV ++
Sbjct: 177 KTIDGGTTWTE-SLAMDNYNSNAFIHFFNDLSGVVSNGNGIYKTTDGGTSWTLV-NNSVY 234
Query: 244 LSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKA 301
+ + I E S G+G Y S +G++ +T +GG++W I E
Sbjct: 235 IESISFINE--------STGYG-----YDS---------NGMIYRTDDGGESWLFITEIE 272
Query: 302 ADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
++ I +LY F +E GFV+G DGV+ + L
Sbjct: 273 SNIIPRDLY---FFDEAHGFVIGRDGVIFETL 301
Score = 43.1 bits (100), Expect = 0.16, Method: Composition-based stats.
Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 58/228 (25%)
Query: 111 VDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS 170
++ ++ D+ F D HGF++G + ET DGG W + +NSIS
Sbjct: 271 IESNIIPRDLYFF--DEAHGFVIGRDGVIFETLDGGVNWKGYTF-----------YNSIS 317
Query: 171 ---FKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
F V + T D+G++W+ + ++ + + N +
Sbjct: 318 QLQFLTSTTAFVAAGKDIYTTIDSGDTWQ-----------------YQSSLEQEVINFKF 360
Query: 228 RADGGLWLL--------VRGGGLFLSKGTGITEEFEE----VPVQSRGFGILDVGYRSQD 275
++ +L+ + GG ++ K GIT F + V GI+ G
Sbjct: 361 LSETTGYLITTNFVYKSIDGGMSWIKKDNGITTNFLDDLFSVDFIDENIGIISGG----- 415
Query: 276 EAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
A+ + V+ KTT+GG+TW +++ + + ++FIN + + L
Sbjct: 416 ---ASENNKVVYKTTDGGETWNKQE-----SISFKQIEFINSETVYAL 455
>gi|387893690|ref|YP_006323987.1| BNR/Asp-box repeat domain-containing protein [Pseudomonas
fluorescens A506]
gi|387160471|gb|AFJ55670.1| BNR/Asp-box repeat domain protein [Pseudomonas fluorescens A506]
Length = 345
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + + W + Y + LLD+ F +D NHG +G L+ET DGGKTW
Sbjct: 116 QILASTDGGATWTQQYQDLKREAPLLDVWF--NDANHGLAVGAYGALIETTDGGKTWNDV 173
Query: 153 SIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N+I+ KG +IVG+ + +SD G++WE++ P L G ++
Sbjct: 174 S-ERLDNED-QYHLNAIAQIKGAGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGVIS 231
Query: 210 FWQPH 214
QP
Sbjct: 232 TAQPQ 236
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 23/201 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L + DGG TW +
Sbjct: 79 SDDQGNTWTQAKVPTRQ---LLTAVFFVDD-QHGWAVGHDAQILASTDGGATWTQQYQDL 134
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + FN G VG L+ T+D G++W + S +L + Q H
Sbjct: 135 KREAPLLDVWFN----DANHGLAVGAYGALIETTDGGKTWNDV--SERLDNED---QYHL 185
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A +I+ GL+++ G +F S G T E E P + FG++
Sbjct: 186 NAIA-QIKG------AGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGVISTAQPQTL 238
Query: 276 EAWAAGGSGVLLKTTNGGKTW 296
A+ G G L ++T+ G TW
Sbjct: 239 LAY--GLRGNLYRSTDFGSTW 257
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P L H AV Q +
Sbjct: 60 VVHAGKRLVAVGDRGHILYSDDQGNTWTQAKVPTRQLLTAVFFVDDQHGWAVGHDAQILA 119
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++++++ ++ +LDV + + A G G L
Sbjct: 120 STDGGATW----------------TQQYQDLKREAP---LLDVWFNDANHGLAVGAYGAL 160
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++TT+GGKTW + E+ + +L ++ I F++G G + +
Sbjct: 161 IETTDGGKTWNDVSERLDNEDQYHLNAIAQIKGAGLFIVGEQGSMFR 207
>gi|375148254|ref|YP_005010695.1| hypothetical protein [Niastella koreensis GR20-10]
gi|361062300|gb|AEW01292.1| hypothetical protein Niako_5053 [Niastella koreensis GR20-10]
Length = 774
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 97/265 (36%), Gaps = 70/265 (26%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
N+GF +G T++ T+DGG TW ++ + + +GWIVG +L
Sbjct: 255 NNGFAIGNNGTIMITQDGGTTWGYQT-----SNNGVIMYTIFMLSSTQGWIVGDNGTMLK 309
Query: 188 TSDAGE-------------SWERIPLSSQLPGDMA--------------FWQPHNRAVAR 220
T +AG +W I ++ G + W +
Sbjct: 310 TINAGGYTWTALNSGSTTITWRDIFFTNTSTGWICGDGGNIRKSTNSGNTWTSQSSGTTN 369
Query: 221 RIQNM-------GWR--ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFG------ 265
+ ++ GW A G + GG + ++ +G + V +QS G
Sbjct: 370 NLWSLQFVNASSGWAIGASGTICTTSNGGTNWATQTSGTSNTLHGVYMQSISLGWAAGDN 429
Query: 266 ---------------------ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADN 304
+ DV + + WA G G +LKTTNGG +W + +
Sbjct: 430 GTILKYNGTSWSALPSGVTNNLYDVQFIDANTGWAVGFGGTILKTTNGGSSWTAQSSG-- 487
Query: 305 IAANLYSVKFINEKKGFVLGNDGVL 329
NL F++ GFV+G +GV+
Sbjct: 488 TTTNLLGSYFVDANTGFVVGENGVM 512
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 36/223 (16%)
Query: 113 PGVVLL-DIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF 171
PG L + F+ D N G+ +G + +T DGG +W ++ + + F S+ F
Sbjct: 37 PGTAFLAGVQFI--DANTGWFVGQNGLIRKTTDGGTSWTTQASGTTNQ------FYSLKF 88
Query: 172 -KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA- 229
GW G I+ T+D G +W +S + D+ R+ + N GW
Sbjct: 89 VNSTTGWAAGVGGIIRKTAD-GTTWT--SQTSGVTSDLY------RSDFLDV-NTGWIVG 138
Query: 230 -DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLK 288
G + V GG + ++ +G+T + + D+ + + W G +GV+ K
Sbjct: 139 KSGVIRKTVNGGTNWNAQTSGVTTD------------LYDIKFTDANTGWTVGANGVIRK 186
Query: 289 TTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
TTN G TW + + + LYS+ +N G+ G G +L+
Sbjct: 187 TTNAGGTWTAQTSG--TSQTLYSIFMLNSTTGWAAGTTGTILK 227
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 31/203 (15%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTS 189
G+ G + +T DG TW ++ S D YR + + GWIVGK ++ T
Sbjct: 94 GWAAGVGGIIRKTADG-TTWTSQT--SGVTSDL-YRSDFLDVN--TGWIVGKSGVIRKTV 147
Query: 190 DAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR--ADGGLWLLVRGGGLFLSKG 247
+ G +W +S + D+ + N GW A+G + GG + ++
Sbjct: 148 NGGTNWN--AQTSGVTTDL-------YDIKFTDANTGWTVGANGVIRKTTNAGGTWTAQT 198
Query: 248 TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAA 307
+G ++ + + + G WAAG +G +LKTTNGG T
Sbjct: 199 SGTSQTLYSIFMLNSTTG------------WAAGTTGTILKTTNGGTT--WTVQTTPTTD 244
Query: 308 NLYSVKFINEKKGFVLGNDGVLL 330
L+ + F + GF +GN+G ++
Sbjct: 245 PLFCIWFSSANNGFAIGNNGTIM 267
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 94/209 (44%), Gaps = 28/209 (13%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D+N G+++G + +T +GG W ++ + ++ +F GW VG ++
Sbjct: 130 DVNTGWIVGKSGVIRKTVNGGTNWNAQT-SGVTTDLYDIKFT----DANTGWTVGANGVI 184
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA-DGGLWLLVRGGGLFL 244
T++AG +W ++Q G ++ GW A G L GG
Sbjct: 185 RKTTNAGGTW-----TAQTSGT----SQTLYSIFMLNSTTGWAAGTTGTILKTTNGGTTW 235
Query: 245 SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADN 304
+ T T + P + + + S + +A G +G ++ T +GG TW + + +
Sbjct: 236 TVQTTPTTD----P-------LFCIWFSSANNGFAIGNNGTIMITQDGGTTWGYQTSNNG 284
Query: 305 IAANLYSVKFINEKKGFVLGNDGVLLQYL 333
+ +Y++ ++ +G+++G++G +L+ +
Sbjct: 285 VI--MYTIFMLSSTQGWIVGDNGTMLKTI 311
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
L D+ F+ D N G+ +G T+L+T +GG +W +S + +Y ++ G
Sbjct: 451 LYDVQFI--DANTGWAVGFGGTILKTTNGGSSWTAQSSGTTTNLLGSYFVDA-----NTG 503
Query: 177 WIVGKPAILLHTSDAGESWERI-PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL 233
++VG+ ++ T + G +W + ++ D+ F +N + + + ADGG+
Sbjct: 504 FVVGENGVMRKTINGGSTWTSLGSGTTNHLNDVMFVDANNGYTVGVNKTIRYTADGGV 561
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 38/212 (17%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
L + FV + + G+ +G T+ T +GG WA ++ ++ Y SIS G
Sbjct: 371 LWSLQFV--NASSGWAIGASGTICTTSNGGTNWATQTSGTSNTLHGVY-MQSISL----G 423
Query: 177 WIVGKPAILLHTSDAGESWERIP--LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
W G +L + G SW +P +++ L D+ F N GW G
Sbjct: 424 WAAGDNGTILKYN--GTSWSALPSGVTNNLY-DVQFIDA----------NTGWAVGFGGT 470
Query: 235 LL--VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
+L GG + ++ +G T +L + + + G +GV+ KT NG
Sbjct: 471 ILKTTNGGSSWTAQSSGTTTN------------LLGSYFVDANTGFVVGENGVMRKTING 518
Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
G TW +L V F++ G+ +G
Sbjct: 519 GSTW--TSLGSGTTNHLNDVMFVDANNGYTVG 548
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 23/127 (18%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
L D+ FV D N+G+ +G +T+ T DGG TW ++ + E Y NS G
Sbjct: 533 LNDVMFV--DANNGYTVGVNKTIRYTADGGVTWTTQASSNPSEIRSVYFVNS-----NMG 585
Query: 177 WIVG-----KPAIL----LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
W VG + +L LH S E+ +++L WQ A A R + + W
Sbjct: 586 WTVGLNGEVQTYLLVTLPLHISSI-EAASTDCSTARLQ-----WQTTGDAAADRYE-VEW 638
Query: 228 RADGGLW 234
ADG W
Sbjct: 639 SADGNNW 645
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 34/207 (16%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEED-FNYRFNSISFKGKEGWIVGKPAILLHT 188
G+ G T+L K G +W+ ++PS + ++ +F GW VG +L T
Sbjct: 423 GWAAGDNGTIL--KYNGTSWS--ALPSGVTNNLYDVQF----IDANTGWAVGFGGTILKT 474
Query: 189 SDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK 246
++ G SW + ++ L G F + V +G + + GG + S
Sbjct: 475 TNGGSSWTAQSSGTTTNLLGSY-FVDANTGFVVGE--------NGVMRKTINGGSTWTSL 525
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
G+G T DV + + + G + + T +GG TW + +++
Sbjct: 526 GSGTTNHLN------------DVMFVDANNGYTVGVNKTIRYTADGGVTWTTQASSN--P 571
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQYL 333
+ + SV F+N G+ +G +G + YL
Sbjct: 572 SEIRSVYFVNSNMGWTVGLNGEVQTYL 598
>gi|410477695|ref|YP_006765332.1| glycosyl hydrolase family protein [Leptospirillum ferriphilum
ML-04]
gi|424868360|ref|ZP_18292109.1| putative BNR repeat containing glycosyl hydrolase [Leptospirillum
sp. Group II 'C75']
gi|124516413|gb|EAY57921.1| conserved protein of unknown function [Leptospirillum rubarum]
gi|387221383|gb|EIJ75954.1| putative BNR repeat containing glycosyl hydrolase [Leptospirillum
sp. Group II 'C75']
gi|406772947|gb|AFS52372.1| putative glycosyl hydrolase, BNR repeat protein [Leptospirillum
ferriphilum ML-04]
Length = 352
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 45/222 (20%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A +W V PV L DI F PD L HGF++G R T L+T+DGG +W+ S+P+
Sbjct: 140 SQDAGMSWSVVSTPVH-DRFLEDIDF-PDPL-HGFIVGERGTFLKTRDGGHSWSRMSLPT 196
Query: 157 AEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPL-----SSQLPGDMAFW 211
+ + N +EGW+ G L T D G +W + L + Q P A W
Sbjct: 197 TQNLYAVHFLNR-----REGWVAGWHQTLFSTRDGGRTWSPVALAVPRVTRQKPSFNAIW 251
Query: 212 QPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
G + D LLV G G ++ S G + + +PV++ +G+
Sbjct: 252 --------------GNKKD----LLVAGDHGLVYFSSDKGESFQRISLPVETDLYGVCQT 293
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYS 311
GSG ++ G W ++ I + L S
Sbjct: 294 ------------GSGTIILVGEKGALWSLDEKGKKIRSVLPS 323
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 234 WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGG 293
W+ G L S+ G++ PV R + D+ + + G G LKT +GG
Sbjct: 129 WIAGDSGTLLFSQDAGMSWSVVSTPVHDRF--LEDIDFPDPLHGFIVGERGTFLKTRDGG 186
Query: 294 KTWIREKAADNIAANLYSVKFINEKKGFVLG 324
+W R NLY+V F+N ++G+V G
Sbjct: 187 HSWSRMSLPTT--QNLYAVHFLNRREGWVAG 215
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 65/175 (37%), Gaps = 31/175 (17%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAI 184
D H +G + + + W P E F + F + GWI G
Sbjct: 83 DPGHVIAVGAQSIIWRIDEASGKWEKVRSPVKSE------FYRVLFPDPRHGWIAGDSGT 136
Query: 185 LLHTSDAGESWERI--PLSSQLPGDMAFWQP-HNRAVARRIQNMGWRADGGLWLLVRGGG 241
LL + DAG SW + P+ + D+ F P H V R G +L R GG
Sbjct: 137 LLFSQDAGMSWSVVSTPVHDRFLEDIDFPDPLHGFIVGER----------GTFLKTRDGG 186
Query: 242 LFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
S+ + T + + V + ++ E W AG L T +GG+TW
Sbjct: 187 HSWSRMSLPTTQ-----------NLYAVHFLNRREGWVAGWHQTLFSTRDGGRTW 230
>gi|375143847|ref|YP_005006288.1| hypothetical protein [Niastella koreensis GR20-10]
gi|361057893|gb|AEV96884.1| hypothetical protein Niako_0486 [Niastella koreensis GR20-10]
Length = 779
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 32/209 (15%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED-FNYRFNSISFKGKEGWIVGKPAI 184
+ N G++ L +T DGG TWA S+ S D F+ +F GWIVG
Sbjct: 128 NANTGWVAANNGNLQKTTDGGGTWA--SLNSGISNDLFDVKF----VTATTGWIVGDNGR 181
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW-RADGGLWLLVRGGGLF 243
+ T+D G +W S+Q G ++ N GW D G+ L GG
Sbjct: 182 IRKTTDGGNTW-----STQTSGTT----QRLLSIYFMNANTGWISGDNGVVLKTTDGGTT 232
Query: 244 LSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
S T T ++F + + GI A G +G ++ T +GG TW + +
Sbjct: 233 WSMQTTPTNDDFYSITFVNANVGI------------AVGQNGTIIATADGGATWGIQTS- 279
Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
N + LY V F+N+ G+ +G++G +++
Sbjct: 280 -NTGSRLYGVYFVNQGLGWAVGDNGTIIK 307
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 27/159 (16%)
Query: 176 GWIVGKPAILLHTSDAGESWE-RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA--DGG 232
GWI G + TSD G +W + ++Q + F+ N GW A +G
Sbjct: 91 GWIAGNGGAVRKTSDGGTTWSAQTSNTTQNINSIFFFNA----------NTGWVAANNGN 140
Query: 233 LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
L GGG + S +GI+ + + DV + + W G +G + KTT+G
Sbjct: 141 LQKTTDGGGTWASLNSGISND------------LFDVKFVTATTGWIVGDNGRIRKTTDG 188
Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G TW + + L S+ F+N G++ G++GV+L+
Sbjct: 189 GNTWSTQTSG--TTQRLLSIYFMNANTGWISGDNGVVLK 225
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 56/249 (22%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKE 175
LL I F+ + N G++ G +L+T DGG TW+ ++ P+ ++ F SI+F
Sbjct: 203 LLSIYFM--NANTGWISGDNGVVLKTTDGGTTWSMQTTPTNDD------FYSITFVNANV 254
Query: 176 GWIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR-ADGG 232
G VG+ ++ T+D G +W + S+L G V Q +GW D G
Sbjct: 255 GIAVGQNGTIIATADGGATWGIQTSNTGSRLYG-----------VYFVNQGLGWAVGDNG 303
Query: 233 LWL--LVRGGGLFLSKGTGITEEFEEVPV--QSRGFGILDVG------------------ 270
+ GG + + + T+ ++ Q+ G+ D G
Sbjct: 304 TIIKTTAAGGHTWTEQNSNSTQTLRDIFFINQTNGWLAGDNGTIRKTTNGGNTWTTVTSG 363
Query: 271 ---------YRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGF 321
+ + W G +G + K+TNGG TW + ++ L SV FI+ G+
Sbjct: 364 TPEDLRSIFFADANTGWVVGSNGTIRKSTNGGTTWTNQTNPG--SSTLRSVFFISSTTGW 421
Query: 322 VLGNDGVLL 330
V GN+G +L
Sbjct: 422 VAGNNGQVL 430
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKE 175
LL + FV D + G+ +G T+++T +GG TW+ + + + R N + F
Sbjct: 492 LLGVYFV--DASIGYAVGDNGTIIKTTNGGATWSQLNSGTGD------RLNEVYFTSAAT 543
Query: 176 GWIVGKPAILLHTSDAGESW--ERIPLSSQL 204
GW VG+ +L+T+D G +W E SS++
Sbjct: 544 GWAVGQGGTILYTNDGGATWSAENSATSSEI 574
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 58/245 (23%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIP------------------------------ 155
D N G+++G+ T+ ++ +GG TW ++ P
Sbjct: 375 DANTGWVVGSNGTIRKSTNGGTTWTNQTNPGSSTLRSVFFISSTTGWVAGNNGQVLTTTD 434
Query: 156 ------SAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDM 208
S N + I F GW+VG+ + ++D G +W +S + D+
Sbjct: 435 GGTTWTSRNTGITNRDYYDIQFVSASTGWVVGENGTIRKSTDGGINWS--AQNSTVNDDL 492
Query: 209 AFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILD 268
+ ++ + + +G + GG + +G + EV
Sbjct: 493 LGVYFVDASIGYAVGD-----NGTIIKTTNGGATWSQLNSGTGDRLNEVY---------- 537
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
+ S WA G G +L T +GG TW E +A ++ + SV F+ G+ +G++G
Sbjct: 538 --FTSAATGWAVGQGGTILYTNDGGATWSAENSA--TSSEIRSVHFVAGGVGWSVGSNGD 593
Query: 329 LLQYL 333
+ Y+
Sbjct: 594 VQTYI 598
>gi|374701905|ref|ZP_09708775.1| hypothetical protein PseS9_00655 [Pseudomonas sp. S9]
Length = 358
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 95/220 (43%), Gaps = 32/220 (14%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS-ISFKGKE 175
LLDI F DD GF +G LLET DGG W S E+ Y NS I+ K
Sbjct: 150 LLDIWF-KDDAKTGFAVGAYGALLETTDGGANWEDVSDRMNNED--GYHLNSIIAVKDSG 206
Query: 176 GWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL 233
++VG+ ++ ++D G++WE + P L G +A +P
Sbjct: 207 LFVVGELGVMFRSADWGQTWETVESPYDGSLFGAVATKEPAT------------------ 248
Query: 234 WLLVRG--GGLFLSKGTGITEEFEEVPVQSRG---FGILDVGYRSQDEAWAAGGSGVLLK 288
LLV G G LF S G T + E+ + G FG+ D + G G +LK
Sbjct: 249 -LLVYGLRGHLFRSSDFGDTWQQIEINTPNNGPLEFGLADGELLADGSIVVVGHGGTVLK 307
Query: 289 TTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
+T+ G+ + AD ++ L S + K ++G GV
Sbjct: 308 STDDGRNFSLVNRADRVS--LSSAATTDNGKLILVGQGGV 345
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ S W + +P +L + FV D HG+ +G +L T DGG+TW +
Sbjct: 89 SDDNGSTWTQGKVPTRQ--LLTAVYFVDD--KHGWAVGHDAQILATTDGGQTW----VKQ 140
Query: 157 AEEEDFNYRFNSISFK--GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPH 214
E+ I FK K G+ VG LL T+D G +WE + S ++ + +
Sbjct: 141 FEDLSREAPLLDIWFKDDAKTGFAVGAYGALLETTDGGANWEDV--SDRMNNEDGY--HL 196
Query: 215 NRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQ 274
N +A + D GL+++ G +F S G T E E P FG V +
Sbjct: 197 NSIIAVK--------DSGLFVVGELGVMFRSADWGQTWETVESPYDGSLFGA--VATKEP 246
Query: 275 DEAWAAGGSGVLLKTTNGGKTW 296
G G L ++++ G TW
Sbjct: 247 ATLLVYGLRGHLFRSSDFGDTW 268
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLDI L +G R +L + D G TW +P+ + Y + K
Sbjct: 66 LLLDITAAGKRL---VAVGDRGHILYSDDNGSTWTQGKVPTRQLLTAVYFVDD-----KH 117
Query: 176 GWIVGKPAILLHTSDAGESWER 197
GW VG A +L T+D G++W +
Sbjct: 118 GWAVGHDAQILATTDGGQTWVK 139
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE-KKGFVLGNDG 327
V + WA G +L TT+GG+TW+++ + A L + F ++ K GF +G G
Sbjct: 110 VYFVDDKHGWAVGHDAQILATTDGGQTWVKQFEDLSREAPLLDIWFKDDAKTGFAVGAYG 169
Query: 328 VLLQ 331
LL+
Sbjct: 170 ALLE 173
>gi|406661876|ref|ZP_11069986.1| Ycf48-like protein precursor [Cecembia lonarensis LW9]
gi|405554234|gb|EKB49344.1| Ycf48-like protein precursor [Cecembia lonarensis LW9]
Length = 935
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 28/223 (12%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTS 189
G+++G T +GG ++ RS P + + FN+ F + + G+I G+ ILL T+
Sbjct: 333 GYIIGENGRFFFTNNGGSSFNDRSRPVSNQ--FNHLFFTTN---SLGYICGEEGILLRTT 387
Query: 190 DAGESWERI-PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WLLVRGGGL----- 242
++G +W + P +++ + F+ + V M + ADGG+ W + G
Sbjct: 388 NSGSNWTSLNPGTTEDLNGLFFFNNNVGYVVGNKGFMAFTADGGITWEKIELGNTSVNFK 447
Query: 243 ---FLSKGTGI---------TEEFEEVPVQSRGFGIL--DVGYRSQDEAWAAGGSGVLLK 288
F++ +GI E EE + G GI D+ ++ A G SG K
Sbjct: 448 RLAFINTESGILIGDNGFVSIYENEEWRTINLGTGIQFNDISILDENSAVIVGQSGNAYK 507
Query: 289 TTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
T + G +W E+ N + N +V F++++ GF+ G G+++Q
Sbjct: 508 TEDKGLSW--ERLNLNFSENFNAVTFLDDEIGFIAGEKGLMIQ 548
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 112/274 (40%), Gaps = 43/274 (15%)
Query: 58 SSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVL 117
S+ S +LN+ +++SQ I + A G + +S A +W R + + L
Sbjct: 106 SNIGSDVNLNKVKYLSQQ-----RIYVVADNG---EIYRSNNAGESWTRQNLGTNAD--L 155
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEG 176
+ FV D G++ + + T +GG W R+ N N + F G G
Sbjct: 156 RGLFFVNSDT--GYVAASNGQIFRTFNGGNNWTTRNTGQ------NRALNDVHFVNGTTG 207
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
+ VG +L TSD G+SW +SS D+ + + R +N+G LL
Sbjct: 208 YAVGNRGTILRTSDTGDSW--TAVSSGTERDL-----YAVSFNRSNRNLGVVTGENATLL 260
Query: 237 --VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYR-SQDEAWAAGGSGVLLKTTNGG 293
V GG F + E + LD +R + + +A G +G L+ + N G
Sbjct: 261 RTVNGGSTFEGRNVNNQETY------------LDAAFRDNSNNVFALGTNGFLISSGNSG 308
Query: 294 KTWIREKAADNIAANLYSVKFINEKKGFVLGNDG 327
+W + I + F ++ G+++G +G
Sbjct: 309 ASWGTRLSGREI--DYTGTSFRTDRIGYIIGENG 340
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 35/215 (16%)
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE---DFNYRFNSISFKGKEG 176
I +V +++ G++ G Q +L++ DGG +W + P + DF F G
Sbjct: 36 IVWVNEEV--GYISG-NQIILKSIDGGLSWVEQETPLKTKMLAVDF--------FSESVG 84
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
+VG+ + T++ G +W + S + + + R ++++
Sbjct: 85 MMVGENGNIFKTNNGGNTWTLSNIGSDVNLNKVKYLSQQR----------------IYVV 128
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
G ++ S G + + + + G+ + + D + A +G + +T NGG W
Sbjct: 129 ADNGEIYRSNNAGESWTRQNLGTNADLRGLF---FVNSDTGYVAASNGQIFRTFNGGNNW 185
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
N A N V F+N G+ +GN G +L+
Sbjct: 186 TTRNTGQNRALN--DVHFVNGTTGYAVGNRGTILR 218
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
I + G+ DI+ + D N ++G +T+D G +W ++ +F+ FN+
Sbjct: 477 INLGTGIQFNDISIL--DENSAVIVGQSGNAYKTEDKGLSWERLNL------NFSENFNA 528
Query: 169 ISFKGKE-GWIVGKPAILLHTSDAGESWERI 198
++F E G+I G+ +++ T D G +WE+
Sbjct: 529 VTFLDDEIGFIAGEKGLMIQTKDGGMTWEKF 559
>gi|407717496|ref|YP_006838776.1| glycosyl hydrolase family protein [Cycloclasticus sp. P1]
gi|407257832|gb|AFT68273.1| Glycosyl hydrolase, BNR repeat protein [Cycloclasticus sp. P1]
Length = 409
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 11/107 (10%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
K+E+ W +YI V+ ++ ++FV D N+G+ +G R ++L T DGG TW +
Sbjct: 57 KTEDGGETWSAIYIGVNE--LIRHLSFV--DANNGWAVGHRGSILHTADGGFTWVVQ--- 109
Query: 156 SAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLS 201
++++ NY ISF GW VG A + HTSD G++WE+ L+
Sbjct: 110 --KQDEGNY-LRDISFADVNNGWAVGHGAAIWHTSDGGKNWEKQTLT 153
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 33/187 (17%)
Query: 122 FVPDDL--------NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-K 172
F PD+L N GF+ G ++ +T+DGG+TW+ I N +SF
Sbjct: 30 FWPDNLYAVEFVNENIGFIAGYSGSVFKTEDGGETWSAIYIG------VNELIRHLSFVD 83
Query: 173 GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGG 232
GW VG +LHT+D G +W + Q G+ + R ++ N GW G
Sbjct: 84 ANNGWAVGHRGSILHTADGGFTW---VVQKQDEGN------YLRDISFADVNNGWAVGHG 134
Query: 233 --LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTT 290
+W GG + K T + ++P R G++ + D A G G++ T
Sbjct: 135 AAIWHTSDGGKNW-EKQTLTGFDGRDLP---RLHGVV---AKDADSAILVGEFGMIAHTE 187
Query: 291 NGGKTWI 297
N G W+
Sbjct: 188 NKGDLWL 194
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 112 DPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF 171
D G L DI+F D+N+G+ +G + T DGGK W +++ + D ++
Sbjct: 112 DEGNYLRDISFA--DVNNGWAVGHGAAIWHTSDGGKNWEKQTLTGFDGRDLPRLHGVVAK 169
Query: 172 KGKEGWIVGKPAILLHTSDAGESW 195
+VG+ ++ HT + G+ W
Sbjct: 170 DADSAILVGEFGMIAHTENKGDLW 193
>gi|408481573|ref|ZP_11187792.1| hypothetical protein PsR81_13519 [Pseudomonas sp. R81]
Length = 327
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 9/163 (5%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S S+ + + + RQ + TA + G Q S + + W + Y +
Sbjct: 60 SDDQGSTWTQAKVPTRQLL--TAVFFIDDKQGWAVGHDAQILSSSDGGATWTQQYQDLKR 117
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI-SFK 172
LLD+ F +D NHG +G L+ET DGGKTW S + ED Y N+I S K
Sbjct: 118 EAPLLDVWF--NDANHGLAVGAYGALIETTDGGKTWEDVS-DRLDNED-QYHLNAIASIK 173
Query: 173 GKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
+IVG+ + +SD G++WE++ P L G ++ QP
Sbjct: 174 DAGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGVISTAQP 216
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 67/202 (33%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G TW +P+ + ++ F K+GW VG A +L +SD
Sbjct: 51 VGDRGHILYSDDQGSTWTQAKVPTRQ------LLTAVFFIDDKQGWAVGHDAQILSSSDG 104
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G A W + + R
Sbjct: 105 G----------------ATWTQQYQDLKR------------------------------- 117
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANL 309
E P +LDV + + A G G L++TT+GGKTW + ++ + +L
Sbjct: 118 ----EAP-------LLDVWFNDANHGLAVGAYGALIETTDGGKTWEDVSDRLDNEDQYHL 166
Query: 310 YSVKFINEKKGFVLGNDGVLLQ 331
++ I + F++G G + +
Sbjct: 167 NAIASIKDAGLFIVGEQGSMFR 188
>gi|300312824|ref|YP_003776916.1| plant photosystem II stability/assembly factor protein
[Herbaspirillum seropedicae SmR1]
gi|300075609|gb|ADJ65008.1| plant photosystem II stability/assembly factor protein
[Herbaspirillum seropedicae SmR1]
Length = 331
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 23/190 (12%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDFNYRFN 167
+PVD L ++F D + G+ G +L T DGGKTWA RS S ++ F+ F
Sbjct: 83 VPVD--TTLTSVSFA--DASQGWAAGHGGVILHTADGGKTWALQRSDTSVDQPLFSIWFA 138
Query: 168 SISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
+ + EGW G ++LLHT D G+SW+++ L + PG RA +
Sbjct: 139 NAN----EGWAAGLWSLLLHTQDGGKSWQQVKLPAA-PG-------QQRADLNLLHIFPG 186
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-SGVL 286
R DG L++ G L+ S+ G + +E + ++ L G + A GG G L
Sbjct: 187 R-DGALFVAAEQGVLYRSRDGG--QHWEALATGTKAS--LWSGVSTASGAIVVGGLGGKL 241
Query: 287 LKTTNGGKTW 296
L++ +GG+ W
Sbjct: 242 LRSDDGGQHW 251
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G + + ++VPV + + V + + WAAG GV+L T +GGKTW
Sbjct: 65 GYIILSDDGGASYRQADQVPVDTT---LTSVSFADASQGWAAGHGGVILHTADGGKTWAL 121
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+++ ++ L+S+ F N +G+ G +LL
Sbjct: 122 QRSDTSVDQPLFSIWFANANEGWAAGLWSLLLH 154
>gi|421619362|ref|ZP_16060319.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri KOS6]
gi|409778628|gb|EKN58321.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri KOS6]
Length = 363
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 27/239 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ +W + +P +L I FV D HG+ +G +L T DGG++W+ +
Sbjct: 94 SDDQADSWTQAKVPTRQ--MLTAIDFVDD--KHGWAVGHDALVLATADGGESWSVQY--- 146
Query: 157 AEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E+ + + F+ + G VG L+ T D G+SW+ I S +L + F H
Sbjct: 147 -EDREREAPLLDVWFEDTRHGIAVGAYGALIETVDGGQSWDDI--SERLDNEDGF---HL 200
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A I+ G L+L+ GG+F S G T E E P Q FG+ VG
Sbjct: 201 NAIAH-IEGAG------LFLVGEMGGMFRSADLGATWERVESPYQGSFFGV--VGGSEPG 251
Query: 276 EAWAAGGSGVLLKTTNGGKTWIREKAADN----IAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++T+ G +W + D + + L + + + + V+G+ G +L
Sbjct: 252 FVIAFGLRGHLFRSTDFGDSWETIELGDGDGQALESGLAAGSLLGDGRIVVVGHGGSVL 310
>gi|308271565|emb|CBX28173.1| hypothetical protein N47_G34970 [uncultured Desulfobacterium sp.]
Length = 187
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D HG+++G+ T+L T DGG+TW P+ ++ NY F ++GWIVG+ +
Sbjct: 16 DAGHGWVVGSNGTILATSDGGRTWKPQVSGTS-----NYLFGVCFVNPQKGWIVGEAGTI 70
Query: 186 LHTSDAGESWERIPLSSQLPGDM 208
LHT D G W+ +Q G+M
Sbjct: 71 LHTQDGGAHWQ-----AQQSGEM 88
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
+ V + + + W G +G +L T +GG W +++ + + A L +VKF++EK+GF++G
Sbjct: 50 LFGVCFVNPQKGWIVGEAGTILHTQDGGAHWQAQQSGE-MEALLEAVKFLDEKRGFIVGE 108
Query: 326 DGVLL 330
G +L
Sbjct: 109 FGSIL 113
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 276 EAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W G +G +L T++GG+TW + + L+ V F+N +KG+++G G +L
Sbjct: 19 HGWVVGSNGTILATSDGGRTW--KPQVSGTSNYLFGVCFVNPQKGWIVGEAGTILH 72
>gi|229590966|ref|YP_002873085.1| hypothetical protein PFLU3522 [Pseudomonas fluorescens SBW25]
gi|229362832|emb|CAY49742.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
Length = 331
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S S+ + + + RQ + TA + G Q S + + W + Y +
Sbjct: 64 SDDQGSTWTQAKVPTRQLL--TAVFFIDDKQGWAVGHDAQILASSDGGATWTQQYQDLKR 121
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
LLD+ F +D NHG +G L+ET DGGKTW S E+ F+ N+I+
Sbjct: 122 EAPLLDVWF--NDANHGLAVGAYGALIETTDGGKTWQDVSDRLDNEDQFH--LNAIAHIK 177
Query: 174 KEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHN 215
G +IVG+ + +SD G++WE++ P L G ++ QP
Sbjct: 178 DAGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGVISTAQPQT 222
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P L AV Q +
Sbjct: 45 VVHAGKRLVAVGDRGHILYSDDQGSTWTQAKVPTRQLLTAVFFIDDKQGWAVGHDAQILA 104
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++++++ R +LDV + + A G G L
Sbjct: 105 SSDGGATW----------------TQQYQDL---KREAPLLDVWFNDANHGLAVGAYGAL 145
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++TT+GGKTW + ++ + +L ++ I + F++G G + +
Sbjct: 146 IETTDGGKTWQDVSDRLDNEDQFHLNAIAHIKDAGLFIVGEQGSMFR 192
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 40/196 (20%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G TW +P+ + ++ F K+GW VG A +L +SD
Sbjct: 55 VGDRGHILYSDDQGSTWTQAKVPTRQ------LLTAVFFIDDKQGWAVGHDAQILASSDG 108
Query: 192 GESW--ERIPLSSQLPGDMAFWQPHNRA---------------------VARRIQN---- 224
G +W + L + P ++ N V+ R+ N
Sbjct: 109 GATWTQQYQDLKREAPLLDVWFNDANHGLAVGAYGALIETTDGGKTWQDVSDRLDNEDQF 168
Query: 225 ----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
+ D GL+++ G +F S G T E E P + FG++ A+
Sbjct: 169 HLNAIAHIKDAGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGVISTAQPQTLLAY-- 226
Query: 281 GGSGVLLKTTNGGKTW 296
G G L ++T+ G TW
Sbjct: 227 GLRGNLYRSTDFGSTW 242
>gi|392983195|ref|YP_006481782.1| hypothetical protein PADK2_08935 [Pseudomonas aeruginosa DK2]
gi|418586352|ref|ZP_13150394.1| hypothetical protein O1O_16761 [Pseudomonas aeruginosa MPAO1/P1]
gi|418593519|ref|ZP_13157363.1| hypothetical protein O1Q_22708 [Pseudomonas aeruginosa MPAO1/P2]
gi|419752592|ref|ZP_14278999.1| hypothetical protein CF510_06250 [Pseudomonas aeruginosa
PADK2_CF510]
gi|421517610|ref|ZP_15964284.1| hypothetical protein A161_15065 [Pseudomonas aeruginosa PAO579]
gi|375043095|gb|EHS35726.1| hypothetical protein O1O_16761 [Pseudomonas aeruginosa MPAO1/P1]
gi|375047527|gb|EHS40072.1| hypothetical protein O1Q_22708 [Pseudomonas aeruginosa MPAO1/P2]
gi|384401132|gb|EIE47488.1| hypothetical protein CF510_06250 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392318700|gb|AFM64080.1| hypothetical protein PADK2_08935 [Pseudomonas aeruginosa DK2]
gi|404347092|gb|EJZ73441.1| hypothetical protein A161_15065 [Pseudomonas aeruginosa PAO579]
Length = 361
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 134 SDDAGSTWARQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDVSERL 191
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 192 DNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG------- 242
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +EE+P+++ FG+ D
Sbjct: 243 ----------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFGLSDG 290
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++T+GG+++ D + +L V + ++G GV
Sbjct: 291 ALLADGRIVVVGHGGSVLESTDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQGGVH 348
Query: 330 L 330
L
Sbjct: 349 L 349
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 65/201 (32%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GKTW +P+ + + N ++GW VG A +L + DAG
Sbjct: 84 VGDRGHILLSDDDGKTWTQAKVPTRQLLTSVFFVNE-----RKGWAVGHDAQILVSDDAG 138
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
+W AR+ +++G
Sbjct: 139 STW-----------------------ARQFEDLG-------------------------- 149
Query: 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANLY 310
E P +LD+ + + A G G LL+T +GG+ W + E+ + +L
Sbjct: 150 --REAP-------LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQFHLN 200
Query: 311 SVKFINEKKGFVLGNDGVLLQ 331
++ + + V+G G L +
Sbjct: 201 AIAAVKDNGLLVVGEAGSLFR 221
>gi|386057949|ref|YP_005974471.1| putative BNR/Asp-box repeat protein [Pseudomonas aeruginosa M18]
gi|347304255|gb|AEO74369.1| putative BNR/Asp-box repeat protein [Pseudomonas aeruginosa M18]
Length = 361
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 134 SDDAGSTWTRQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDVSERL 191
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 192 DNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG------- 242
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +EE+P+++ FG+ D
Sbjct: 243 ----------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFGLSDG 290
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++T+GG+++ D + +L V + ++G GV
Sbjct: 291 ALLADGRIVVVGHGGSVLESTDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQGGVH 348
Query: 330 L 330
L
Sbjct: 349 L 349
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 126/319 (39%), Gaps = 51/319 (15%)
Query: 48 PSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERV 107
P + +S + S S L R +S LSL ++ AAT L E + A S V
Sbjct: 7 PGQSADASRHPAIPSRSPLTSRA-LSFLGALSL-LTFAATPVLAE---STPTAASPQFAV 61
Query: 108 YIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFN 167
P +LL +A L +G R +L + D GKTW +P+ + + N
Sbjct: 62 ESPKAASSLLLSVAHAGKRL---VAVGDRGHILLSDDDGKTWTQAKVPTRQLLTSVFFVN 118
Query: 168 SISFKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFW---QPHNRA----- 217
++GW VG A +L + DAG +W R L + P + W + H A
Sbjct: 119 E-----RKGWAVGHDAQILVSDDAGSTWTRQFEDLGREAP-LLDIWFADEQHGLAVGAYG 172
Query: 218 --------------VARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFE 255
V+ R+ N + D GL ++ G LF SK G T E
Sbjct: 173 ALLETRDGGQHWEDVSERLDNEDQFHLNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKL 232
Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAAD-NIAANLYSV 312
E P + FG +G G G L ++ + G +W I KAA ++ L
Sbjct: 233 EGPYEGSLFGA--IGTADAGGVLVYGLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDG 290
Query: 313 KFINEKKGFVLGNDGVLLQ 331
+ + + V+G+ G +L+
Sbjct: 291 ALLADGRIVVVGHGGSVLE 309
>gi|15598276|ref|NP_251770.1| hypothetical protein PA3080 [Pseudomonas aeruginosa PAO1]
gi|254241780|ref|ZP_04935102.1| hypothetical protein PA2G_02491 [Pseudomonas aeruginosa 2192]
gi|9949188|gb|AAG06468.1|AE004732_2 hypothetical protein PA3080 [Pseudomonas aeruginosa PAO1]
gi|126195158|gb|EAZ59221.1| hypothetical protein PA2G_02491 [Pseudomonas aeruginosa 2192]
Length = 365
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 138 SDDAGSTWARQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDVSERL 195
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 196 DNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG------- 246
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +EE+P+++ FG+ D
Sbjct: 247 ----------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFGLSDG 294
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++T+GG+++ D + +L V + ++G GV
Sbjct: 295 ALLADGRIVVVGHGGSVLESTDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQGGVH 352
Query: 330 L 330
L
Sbjct: 353 L 353
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 65/201 (32%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GKTW +P+ + + N ++GW VG A +L + DAG
Sbjct: 88 VGDRGHILLSDDDGKTWTQAKVPTRQLLTSVFFVNE-----RKGWAVGHDAQILVSDDAG 142
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
+W AR+ +++G
Sbjct: 143 STW-----------------------ARQFEDLG-------------------------- 153
Query: 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANLY 310
E P +LD+ + + A G G LL+T +GG+ W + E+ + +L
Sbjct: 154 --REAP-------LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQFHLN 204
Query: 311 SVKFINEKKGFVLGNDGVLLQ 331
++ + + V+G G L +
Sbjct: 205 AIAAVKDNGLLVVGEAGSLFR 225
>gi|420139091|ref|ZP_14646951.1| hypothetical protein PACIG1_2455 [Pseudomonas aeruginosa CIG1]
gi|421159550|ref|ZP_15618674.1| hypothetical protein PABE173_2272 [Pseudomonas aeruginosa ATCC
25324]
gi|421179756|ref|ZP_15637332.1| hypothetical protein PAE2_1787 [Pseudomonas aeruginosa E2]
gi|403248102|gb|EJY61698.1| hypothetical protein PACIG1_2455 [Pseudomonas aeruginosa CIG1]
gi|404546636|gb|EKA55685.1| hypothetical protein PAE2_1787 [Pseudomonas aeruginosa E2]
gi|404546842|gb|EKA55875.1| hypothetical protein PABE173_2272 [Pseudomonas aeruginosa ATCC
25324]
Length = 365
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 138 SDDAGSTWTRQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDVSERL 195
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 196 DNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG------- 246
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +EE+P+++ FG+ D
Sbjct: 247 ----------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFGLSDG 294
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++T+GG+++ D + +L V + ++G GV
Sbjct: 295 ALLADGRIVVVGHGGSVLESTDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQGGVH 352
Query: 330 L 330
L
Sbjct: 353 L 353
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 43/234 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GKTW +P+ + + N ++GW VG A +L + DAG
Sbjct: 88 VGDRGHILLSDDDGKTWTQAKVPTRQLLTSVFFVNE-----RKGWAVGHDAQILVSDDAG 142
Query: 193 ESWERI--PLSSQLPGDMAFW---QPHNRA-------------------VARRIQN---- 224
+W R L + P + W + H A V+ R+ N
Sbjct: 143 STWTRQFEDLGREAP-LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQF 201
Query: 225 ----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
+ D GL ++ G LF SK G T E E P + FG +G
Sbjct: 202 HLNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGA--IGTADAGGVLVY 259
Query: 281 GGSGVLLKTTNGGKTW--IREKAAD-NIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++ + G +W I KAA ++ L + + + V+G+ G +L+
Sbjct: 260 GLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLE 313
>gi|355641123|ref|ZP_09052071.1| hypothetical protein HMPREF1030_01157 [Pseudomonas sp. 2_1_26]
gi|354830986|gb|EHF15016.1| hypothetical protein HMPREF1030_01157 [Pseudomonas sp. 2_1_26]
Length = 365
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 138 SDDAGSTWTRQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDVSERL 195
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 196 DNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG------- 246
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +EE+P+++ FG+ D
Sbjct: 247 ----------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFGLSDG 294
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++T+GG+++ D + +L V + ++G GV
Sbjct: 295 ALLADGRIVVVGHGGSVLESTDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQGGVH 352
Query: 330 L 330
L
Sbjct: 353 L 353
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 43/234 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GKTW +P+ + + N ++GW VG A +L + DAG
Sbjct: 88 VGDRGHILLSDDDGKTWTQAKVPTRQLLTSVFFVNE-----RKGWAVGHDAQILVSDDAG 142
Query: 193 ESWERI--PLSSQLPGDMAFW---QPHNRA-------------------VARRIQN---- 224
+W R L + P + W + H A V+ R+ N
Sbjct: 143 STWTRQFEDLGREAP-LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQF 201
Query: 225 ----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
+ D GL ++ G LF SK G T E E P + FG +G
Sbjct: 202 HLNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGA--IGTADAGGVLVY 259
Query: 281 GGSGVLLKTTNGGKTW--IREKAAD-NIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++ + G +W I KAA ++ L + + + V+G+ G +L+
Sbjct: 260 GLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLE 313
>gi|206603253|gb|EDZ39733.1| Probable glycosyl hydrolase, BNR repeat [Leptospirillum sp. Group
II '5-way CG']
Length = 352
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 33/216 (15%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ +W V PV L DI F PD L HGF++G R T L+T+DGG +W+ S+P+
Sbjct: 140 SQDEGMSWSVVPTPVH-DRFLEDIDF-PDPL-HGFIVGERGTFLKTRDGGHSWSKISLPT 196
Query: 157 AEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
+ ++ F +EGW+ G L T D G +W P++ +P + +P
Sbjct: 197 TQN------LYAVHFLDRREGWVAGWHQTLFSTHDGGRTWS--PVTLAVP-RVTRQKPSF 247
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+ +++ D GL ++ S G + + +PV++ +G+
Sbjct: 248 NAIWGNQKDLLVAGDHGL--------VYFSSDKGESFQRISLPVETDLYGVCQT------ 293
Query: 276 EAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYS 311
GSG ++ G W +K I + L S
Sbjct: 294 ------GSGTIILVGEKGALWSLDKKGKKIRSVLPS 323
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 67/174 (38%), Gaps = 29/174 (16%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D H +G + + + W + +PS + +F + I + GWI G L
Sbjct: 83 DPGHVIAVGAQSIIWRIDEASGKW--KKVPSPVKSEF---YRVIFPDPRHGWIAGDSGTL 137
Query: 186 LHTSDAGESWERI--PLSSQLPGDMAFWQP-HNRAVARRIQNMGWRADGGLWLLVRGGGL 242
L + D G SW + P+ + D+ F P H V R G +L R GG
Sbjct: 138 LFSQDEGMSWSVVPTPVHDRFLEDIDFPDPLHGFIVGER----------GTFLKTRDGGH 187
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
SK + T + + V + + E W AG L T +GG+TW
Sbjct: 188 SWSKISLPTTQ-----------NLYAVHFLDRREGWVAGWHQTLFSTHDGGRTW 230
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 234 WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGG 293
W+ G L S+ G++ PV R + D+ + + G G LKT +GG
Sbjct: 129 WIAGDSGTLLFSQDEGMSWSVVPTPVHDRF--LEDIDFPDPLHGFIVGERGTFLKTRDGG 186
Query: 294 KTWIREKAADNIAANLYSVKFINEKKGFVLG 324
+W K + NLY+V F++ ++G+V G
Sbjct: 187 HSW--SKISLPTTQNLYAVHFLDRREGWVAG 215
>gi|453043813|gb|EME91541.1| hypothetical protein H123_24382 [Pseudomonas aeruginosa PA21_ST175]
Length = 365
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 138 SDDAGSTWARQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDVSERL 195
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 196 DNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG------- 246
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +EE+P+++ FG+ D
Sbjct: 247 ----------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFGLSDG 294
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++T+GG+++ D + +L V + ++G GV
Sbjct: 295 ALLADGRIVVVGHGGSVLESTDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQGGVH 352
Query: 330 L 330
L
Sbjct: 353 L 353
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 65/201 (32%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GKTW +P+ + + N ++GW VG A +L + DAG
Sbjct: 88 VGDRGHILLSDDDGKTWTQAKVPTRQLLTSVFFVNE-----RKGWAVGHDAQILVSDDAG 142
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
+W AR+ +++G
Sbjct: 143 STW-----------------------ARQFEDLG-------------------------- 153
Query: 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANLY 310
E P +LD+ + + A G G LL+T +GG+ W + E+ + +L
Sbjct: 154 --REAP-------LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQFHLN 204
Query: 311 SVKFINEKKGFVLGNDGVLLQ 331
++ + + V+G G L +
Sbjct: 205 AIAAVKDNGLLVVGEAGSLFR 225
>gi|421153474|ref|ZP_15613018.1| hypothetical protein PABE171_2367 [Pseudomonas aeruginosa ATCC
14886]
gi|404523588|gb|EKA34000.1| hypothetical protein PABE171_2367 [Pseudomonas aeruginosa ATCC
14886]
Length = 365
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 138 SDDAGSTWTRQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDVSERL 195
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 196 DNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG------- 246
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +EE+P+++ FG+ D
Sbjct: 247 ----------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFGLSDG 294
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++T+GG+++ D + +L V + ++G GV
Sbjct: 295 ALLADGRIVVVGHGGSVLESTDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQGGVH 352
Query: 330 L 330
L
Sbjct: 353 L 353
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 43/234 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GKTW +P+ + + N ++GW VG A +L + DAG
Sbjct: 88 VGDRGHILLSDDDGKTWTQAKVPTRQLLTSVFFVNE-----RKGWAVGHDAQILVSDDAG 142
Query: 193 ESWERI--PLSSQLPGDMAFW---QPHNRA-------------------VARRIQN---- 224
+W R L + P + W + H A V+ R+ N
Sbjct: 143 STWTRQFEDLGREAP-LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQF 201
Query: 225 ----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
+ D GL ++ G LF SK G T E E P + FG +G
Sbjct: 202 HLNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGA--IGTADAGGVLVY 259
Query: 281 GGSGVLLKTTNGGKTW--IREKAAD-NIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++ + G +W I KAA ++ L + + + V+G+ G +L+
Sbjct: 260 GLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLE 313
>gi|218890720|ref|YP_002439584.1| putative BNR/Asp-box repeat protein [Pseudomonas aeruginosa LESB58]
gi|218770943|emb|CAW26708.1| putative BNR/Asp-box repeat protein [Pseudomonas aeruginosa LESB58]
Length = 365
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 138 SDDAGSTWTRQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDVSERL 195
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 196 DNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG------- 246
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +EE+P+++ FG+ D
Sbjct: 247 ----------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFGLSDG 294
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++T+GG+++ D + +L V + ++G GV
Sbjct: 295 ALLADGRIVVVGHGGSVLESTDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQGGVH 352
Query: 330 L 330
L
Sbjct: 353 L 353
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 45/235 (19%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D GKTW +P+ + S+ F ++GW VG A +L + DA
Sbjct: 88 VGDRGHILLSDDDGKTWTQAKVPTRQ------LLTSVFFVNERKGWAVGHDAQILVSDDA 141
Query: 192 GESWERI--PLSSQLPGDMAFW---QPHNRA-------------------VARRIQN--- 224
G +W R L + P + W + H A V+ R+ N
Sbjct: 142 GSTWTRQFEDLGREAP-LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQ 200
Query: 225 -----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
+ D GL ++ G LF SK G T E E P + FG +G
Sbjct: 201 FHLNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGA--IGTADAGGVLV 258
Query: 280 AGGSGVLLKTTNGGKTW--IREKAAD-NIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++ + G +W I KAA ++ L + + + V+G+ G +L+
Sbjct: 259 YGLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLE 313
>gi|71278627|ref|YP_269516.1| BNR repeat-containing protein [Colwellia psychrerythraea 34H]
gi|71144367|gb|AAZ24840.1| BNR repeat protein [Colwellia psychrerythraea 34H]
Length = 344
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 135/320 (42%), Gaps = 60/320 (18%)
Query: 38 FISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKS 97
FIS S C+ + +S+ + + + S L + +L L ISL L
Sbjct: 12 FISISPVCA--ENTASTINIPTPAIESPLASK-------SLLLDISLIGQEKLVTVGQHG 62
Query: 98 EEALS----AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW-APR 152
LS W++ +PV V L ++ F+ + L G+ +G T+L ++DGG W +
Sbjct: 63 HILLSNDGKKWQQANVPVQ--VTLTNVFFLNEQL--GWAVGHDATILHSQDGGLNWQVQQ 118
Query: 153 SIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESW-----ERIPLSSQLP-- 205
+P E+ F+ F + ++G VG + T+D G +W + I L+ +
Sbjct: 119 YLPLLEKPLFDIYFKN----PQQGIAVGAYGQVFRTNDGGSTWQNEFHQEILLADDVEYL 174
Query: 206 ------------GDMAFWQPH-NRAVARRIQNMGWRADGG-LWLLVRGGGLFLSKGTGIT 251
++ F PH NR V DGG L+LL G L S G+T
Sbjct: 175 NELKAEDEAAYLDEITFILPHFNRLV----------QDGGSLFLLGETGLLAKSDDFGLT 224
Query: 252 -EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLY 310
++F+ S + AG G + ++ N G W ++ N A L
Sbjct: 225 WQQFDNFYQGS----FFSLARTKTGNVLVAGLRGHVFRSLNHGSQW--DEVPTNTTALLN 278
Query: 311 SVKFINEKKGFVLGNDGVLL 330
+ F N+++ F+LGN+G+LL
Sbjct: 279 DIVFANDERIFILGNNGMLL 298
>gi|388470682|ref|ZP_10144891.1| BNR/Asp-box repeat domain protein [Pseudomonas synxantha BG33R]
gi|388007379|gb|EIK68645.1| BNR/Asp-box repeat domain protein [Pseudomonas synxantha BG33R]
Length = 346
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + + W + Y + LLD+ F +D HG +G L+ET DGG TWA
Sbjct: 116 QILASSDGGATWTQQYEDLKREAPLLDVWF--NDARHGLAVGAYGALIETTDGGTTWADV 173
Query: 153 SIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ F+ N+I+ KG +IVG+ + +SD G++WE++ P L G ++
Sbjct: 174 SDRLDNEDQFH--LNAIARIKGAGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGVIS 231
Query: 210 FWQPHN 215
QP
Sbjct: 232 TAQPQT 237
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 23/201 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD G+ +G +L + DGG TW +
Sbjct: 79 SDDQGNTWTQAKVPTRQ---LLTAVFFVDD-KQGWAVGHDAQILASSDGGATWTQQYEDL 134
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + FN + G VG L+ T+D G +W + S +L + F H
Sbjct: 135 KREAPLLDVWFND----ARHGLAVGAYGALIETTDGGTTWADV--SDRLDNEDQF---HL 185
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A RI+ GL+++ G +F S G T E E P + FG++
Sbjct: 186 NAIA-RIKG------AGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGVISTAQPQTL 238
Query: 276 EAWAAGGSGVLLKTTNGGKTW 296
A+ G G L ++T+ G TW
Sbjct: 239 LAY--GLRGNLYRSTDFGSTW 257
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P L AV Q +
Sbjct: 60 VVHAGKRLVAVGDRGHILYSDDQGNTWTQAKVPTRQLLTAVFFVDDKQGWAVGHDAQILA 119
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T+++E++ R +LDV + A G G L
Sbjct: 120 SSDGGATW----------------TQQYEDL---KREAPLLDVWFNDARHGLAVGAYGAL 160
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++TT+GG TW + ++ + +L ++ I F++G G + +
Sbjct: 161 IETTDGGTTWADVSDRLDNEDQFHLNAIARIKGAGLFIVGEQGSMFR 207
>gi|150025538|ref|YP_001296364.1| hypothetical protein FP1482 [Flavobacterium psychrophilum JIP02/86]
gi|149772079|emb|CAL43555.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 334
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILL 186
N G +L T+DGG+ W + +A D SI K ++VG I+L
Sbjct: 143 NIGVCTTATGKILMTQDGGENWTIKVAKNAIGADIVTALRSIYIKDTTTFYLVGSAGIIL 202
Query: 187 HTSDAGESWERIPLSSQLPGDMAFWQPHNRA--VARRIQNMGWRADGGLWLLVRGGGLFL 244
T+D G ++ +P + Q N A + RI++ + GG+ L
Sbjct: 203 KTTDFGTTFTVLPTA----------QATNSATTILYRIKS----PSNKVAYTCGSGGMVL 248
Query: 245 SKGTGITEEFEEV-----PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIRE 299
I E + + P+ FGI + + + + G G++ KTT+ G +WIRE
Sbjct: 249 K----INLENDAITSVKPPMTETMFGI---SFINDNVGYVVGKFGLIFKTTDAGTSWIRE 301
Query: 300 KAADNIAANLYSVKFINEKKGFVLGNDGVL 329
K+ +++ L V + +E G+++GN +L
Sbjct: 302 KSG--VSSTLTDVAYWDENLGYIVGNKLIL 329
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 103/264 (39%), Gaps = 40/264 (15%)
Query: 80 LSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVV--LLDIAFVPDDLNHGFLLGTRQ 137
+S + A G Q K+ + W+++ D G L D+ F D + G+++G
Sbjct: 55 ISRTTAMAVGDMGQVIKTTDQGVTWDKL----DLGTTNYLNDVDFTSDQI--GWIVGESS 108
Query: 138 TLLETKDGGKTWA---PRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDAGE 193
+ +T + G W P ++PS E ++ F + G +L T D GE
Sbjct: 109 VIKKTTNQGLNWTDKKPATLPSTE------NVLAVKFLNENIGVCTTATGKILMTQDGGE 162
Query: 194 SWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEE 253
+W + + D+ R I + D + LV G+ L K T
Sbjct: 163 NWTIKVAKNAIGADIV-------TALRSI----YIKDTTTFYLVGSAGIIL-KTTDFGTT 210
Query: 254 FEEVPVQSRGFGILDVGYR----SQDEAWAAGGSGVLLKTT--NGGKTWIREKAADNIAA 307
F +P + YR S A+ G G++LK N T ++ +
Sbjct: 211 FTVLPTAQATNSATTILYRIKSPSNKVAYTCGSGGMVLKINLENDAITSVKPPMTET--- 267
Query: 308 NLYSVKFINEKKGFVLGNDGVLLQ 331
++ + FIN+ G+V+G G++ +
Sbjct: 268 -MFGISFINDNVGYVVGKFGLIFK 290
>gi|416862196|ref|ZP_11914917.1| hypothetical protein PA13_23760 [Pseudomonas aeruginosa 138244]
gi|334836190|gb|EGM15017.1| hypothetical protein PA13_23760 [Pseudomonas aeruginosa 138244]
Length = 348
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 121 SDDAGSTWARQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDVSERL 178
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 179 DNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG------- 229
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +EE+P+++ FG+ D
Sbjct: 230 ----------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFGLSDG 277
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++T+GG+++ D + +L V + ++G GV
Sbjct: 278 ALLADGRIVVVGHGGSVLESTDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQGGVH 335
Query: 330 L 330
L
Sbjct: 336 L 336
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 65/201 (32%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GKTW +P+ + + N ++GW VG A +L + DAG
Sbjct: 71 VGDRGHILLSDDDGKTWTQAKVPTRQLLTSVFFVNE-----RKGWAVGHDAQILVSDDAG 125
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
+W AR+ +++G
Sbjct: 126 STW-----------------------ARQFEDLG-------------------------- 136
Query: 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANLY 310
E P +LD+ + + A G G LL+T +GG+ W + E+ + +L
Sbjct: 137 --REAP-------LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQFHLN 187
Query: 311 SVKFINEKKGFVLGNDGVLLQ 331
++ + + V+G G L +
Sbjct: 188 AIAAVKDNGLLVVGEAGSLFR 208
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 26/239 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P +L + FV + G+ +G +L + D G TWA +
Sbjct: 80 SDDDGKTWTQAKVPTRQ--LLTSVFFVNE--RKGWAVGHDAQILVSDDAGSTWARQF--- 132
Query: 157 AEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E+ I F ++ G VG LL T D G+ WE + S +L + F H
Sbjct: 133 -EDLGREAPLLDIWFADEQHGLAVGAYGALLETRDGGQHWEDV--SERLDNEDQF---HL 186
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A N GL ++ G LF SK G T E E P + FG +G
Sbjct: 187 NAIAAVKDN-------GLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGA--IGTADAG 237
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAAD-NIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++ + G +W I KAA ++ L + + + V+G+ G +L+
Sbjct: 238 GVLVYGLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLE 296
>gi|421504089|ref|ZP_15951033.1| hypothetical protein A471_12428 [Pseudomonas mendocina DLHK]
gi|400345190|gb|EJO93556.1| hypothetical protein A471_12428 [Pseudomonas mendocina DLHK]
Length = 358
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 24/202 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ +W++ +P +L + FV D HG+++G +L T DGGKTW +
Sbjct: 89 SDDQGQSWQQAKVPTRQ--MLTSLFFV--DAQHGWVVGHDAQILATTDGGKTWTKQF--- 141
Query: 157 AEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E+ + + FK + G+ VG LL T+D G +WE + S +L + A+ H
Sbjct: 142 -EDLEREAPLLDVWFKDLQTGYAVGAYGALLETTDGGANWEDV--SDRLDNEDAY---HL 195
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQ 274
A+ D GL+++ GG+F S+ G T E E+ P + FG L G +
Sbjct: 196 NAITA-------VKDTGLFIVGELGGMFRSRDWGQTWEAVEDKPYEGSLFGAL--GTDAA 246
Query: 275 DEAWAAGGSGVLLKTTNGGKTW 296
G G L ++T+ G +W
Sbjct: 247 GTLLVYGLRGHLFRSTDFGDSW 268
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 23/153 (15%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
VG +L++ D G+SW+ ++P L H V Q + G W
Sbjct: 80 VGDRGHVLYSDDQGQSWQQAKVPTRQMLTSLFFVDAQHGWVVGHDAQILATTDGGKTW-- 137
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
T++FE++ R +LDV ++ +A G G LL+TT+GG W
Sbjct: 138 --------------TKQFEDL---EREAPLLDVWFKDLQTGYAVGAYGALLETTDGGANW 180
Query: 297 --IREKAADNIAANLYSVKFINEKKGFVLGNDG 327
+ ++ + A +L ++ + + F++G G
Sbjct: 181 EDVSDRLDNEDAYHLNAITAVKDTGLFIVGELG 213
>gi|254429330|ref|ZP_05043037.1| BNR/Asp-box repeat domain protein [Alcanivorax sp. DG881]
gi|196195499|gb|EDX90458.1| BNR/Asp-box repeat domain protein [Alcanivorax sp. DG881]
Length = 363
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEG 176
LDIA+ + +G R +L + D G W PS S+ F + G
Sbjct: 35 LDIAYADSRI---VAVGDRGKILYSDDQGDHWKQAVTPS------EVLLTSVCFADARHG 85
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
W VG A++L + D GE+W + Q + + V + + A L+
Sbjct: 86 WAVGHDAVVLGSDDGGETW-----TVQYSDPLGSGEDDAAPVEEELDDY---AMDDLYGD 137
Query: 237 VRGGGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
G + +G + + PV + G +LDV S+D A A GG G L+TT+GG+T
Sbjct: 138 PYGDDAYGDEGDDLYGDSAAMAPVDTSGAPLLDVFCDSRDRAVAVGGYGYFLRTTDGGET 197
Query: 296 WIREKAADNIAA----NLY---SVKFINEKKGFVLGNDGVLLQ 331
W KA D++ +LY + K N++ +V+G GV+
Sbjct: 198 W--NKALDSLDNRDGWHLYDYAAAKGGNDR--YVVGEKGVMFH 236
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 30/176 (17%)
Query: 110 PVDP-GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
PVD G LLD+ D + +G L T DGG+TW +++ S + D + ++
Sbjct: 160 PVDTSGAPLLDV--FCDSRDRAVAVGGYGYFLRTTDGGETW-NKALDSLDNRDGWHLYDY 216
Query: 169 ISFKG-KEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAF--------------W 211
+ KG + ++VG+ ++ H++D G SWE++ P S L G A W
Sbjct: 217 AAAKGGNDRYVVGEKGVMFHSADKGVSWEKLQSPYSGTLFGVTAISDYKALTYGLQGNVW 276
Query: 212 QPHNRA---------VARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVP 258
NR ++R + + ADG + L+ GG+ S G + +P
Sbjct: 277 LTANRGRSWAKIPSKLSRGVNDGTVLADGTVVLVTNAGGILTSHDGGQSFSLRFLP 332
>gi|300776090|ref|ZP_07085949.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
gi|300505223|gb|EFK36362.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
Length = 688
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 81/203 (39%), Gaps = 34/203 (16%)
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR-SIPSAEEEDFNYRFNSISFKGKEGWI 178
I FV N+GF++ T LLET D G TW + +I S N ISFK G+I
Sbjct: 38 IEFVSS--NNGFII-TSNELLETIDSGATWTKKQNILSG---------NDISFKNGIGYI 85
Query: 179 VGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
VG +L T D G SW++I + +N + ++ DGG
Sbjct: 86 VGDSGYILKTIDNGVSWQQISTGFNTSFNTVNIIDNNTIILSGSNSIIKTLDGGT----- 140
Query: 239 GGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
T I V V F +G+ A +G + KT +GG TW
Sbjct: 141 ---------TWINYTIPNVTVVKTAFTSSLIGH-------AVCNNGKIQKTIDGGNTWYN 184
Query: 299 EKAADNIAANLYSVKFINEKKGF 321
+ +N +V FIN+ GF
Sbjct: 185 TYNTNVYPSNFLTVYFINQNVGF 207
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
N+ +L ++++T DGG TW +IP+ + + I G V +
Sbjct: 121 NNTIILSGSNSIIKTLDGGTTWINYTIPNVTVVKTAFTSSLI------GHAVCNNGKIQK 174
Query: 188 TSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW--RADGGLWLLVRGGGLFLS 245
T D G +W ++ P + V QN+G+ R L+ GG
Sbjct: 175 TIDGGNTWYNTYNTNVYPSNFL-------TVYFINQNVGFASRQHDDLFKTTDGG----E 223
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW----IREKA 301
T IT FE + D + ++ +A G G KTTNGG TW +
Sbjct: 224 SWTEITGSFE---------AMYDFYFLDENNGFATGNYGATYKTTNGGITWSQIFFQNGY 274
Query: 302 ADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
DN + +Y + F + KGF G G +++
Sbjct: 275 FDNTS--MYGIFFQDSNKGFATGARGRIIK 302
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 31/218 (14%)
Query: 119 DIAFVPDDLNHGFLLGTRQ-TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEG 176
D F+ ++L + GT + +T DGG TW I + + + +SI F G G
Sbjct: 364 DFTFINENLGYATTGGTYGGHVYKTTDGGSTW---EILNNGNDIIDEGISSICFLDGNTG 420
Query: 177 WIVG--KPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
+I G ++ T++ G SW ++ S+Q G++ F A R+ N G ++
Sbjct: 421 FISGGFNQKKVMKTTNGGSSWTQV--SNQAFGNIQFVNSL-VGYANRVGNY----YGAMY 473
Query: 235 LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGK 294
+ GG + ++ G GI + ++ + AG + + KTTNGG
Sbjct: 474 KTIDGGNTW------------NQLIELAGDGINSFHFVDENNGYFAGDNSIFYKTTNGGL 521
Query: 295 TWIREKAADNIAANLYSV-KFINEKKGFVLGNDGVLLQ 331
+W + + Y++ KF G+++ +G + +
Sbjct: 522 SWTQMS----VPYGYYTLTKFYTPNIGYIVNENGEIYK 555
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK 172
P V ++ AF + H + + +T DGG TW + +F ++ F
Sbjct: 148 PNVTVVKTAFTSSLIGHA--VCNNGKIQKTIDGGNTWYNTYNTNVYPSNFL----TVYFI 201
Query: 173 GKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADG 231
+ G+ + L T+D GESW I S + D F +N +G
Sbjct: 202 NQNVGFASRQHDDLFKTTDGGESWTEITGSFEAMYDFYFLDENNGFATGNYGATYKTTNG 261
Query: 232 GL-WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTT 290
G+ W +F G F+ + +GI ++ ++ +A G G ++KT
Sbjct: 262 GITW-----SQIFFQNG-----YFDNTSM----YGIF---FQDSNKGFATGARGRIIKTI 304
Query: 291 NGGKTWIREKAADN 304
+GG TW + N
Sbjct: 305 DGGNTWTQHSPTYN 318
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 45/246 (18%)
Query: 88 TGLYEQPAKSEEALSAWERVYIP--VDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDG 145
TG Y K+ W +++ + I F D N GF G R +++T DG
Sbjct: 249 TGNYGATYKTTNGGITWSQIFFQNGYFDNTSMYGIFF--QDSNKGFATGARGRIIKTIDG 306
Query: 146 GKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLP 205
G TW S P+ + F + G+ + T++ G++W L
Sbjct: 307 GNTWTQHS-PTYND------FRQLQIVNNVGFALTNNQ-FYKTNNFGDTW-------TLV 351
Query: 206 GDMAFWQPHNRAVARRI-QNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGF 264
G + N + I +N+G+ GG + GG ++ + G T E + + G
Sbjct: 352 GTLNLGTSVNSSDFTFINENLGYATTGGTY----GGHVYKTTDGGSTWE-----ILNNGN 402
Query: 265 GILDVG-----YRSQDEAWAAGG--SGVLLKTTNGGKTW--IREKAADNIAANLYSVKFI 315
I+D G + + + +GG ++KTTNGG +W + +A NI +F+
Sbjct: 403 DIIDEGISSICFLDGNTGFISGGFNQKKVMKTTNGGSSWTQVSNQAFGNI-------QFV 455
Query: 316 NEKKGF 321
N G+
Sbjct: 456 NSLVGY 461
>gi|152988038|ref|YP_001347432.1| hypothetical protein PSPA7_2059 [Pseudomonas aeruginosa PA7]
gi|150963196|gb|ABR85221.1| hypothetical protein PSPA7_2059 [Pseudomonas aeruginosa PA7]
Length = 361
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 134 SDDAGSTWTRQFEDLGRESPLLDIWFA--DERHGLAVGAYGALLETRDGGQRWEDVSERL 191
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ IL + D G +WE++ P L G
Sbjct: 192 DNEDQFH--LNAIAAVKDSGLLVVGEAGILFRSKDWGATWEKLEGPYEGSLFG------- 242
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +E +P+++ FG+ D
Sbjct: 243 ----------AIGTADVGGVLVYGLRGHLFRSADFG--DSWEAIPLKAASGDLEFGLSDG 290
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++T+GG+++ D + +L V + ++G GV
Sbjct: 291 ALLADGRIVVVGHGGSVLESTDGGRSFSVFNRPDRL--SLAGVSATGDGHLVLVGQGGVH 348
Query: 330 L 330
L
Sbjct: 349 L 349
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 43/234 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GKTW+ +P+ + + N ++GW VG A +L + DAG
Sbjct: 84 VGDRGHILLSDDDGKTWSQAKVPTRQLLTSVFFVNE-----RKGWAVGHDAQILVSDDAG 138
Query: 193 ESWERI--PLSSQLPGDMAFWQPHNRA----------------------VARRIQN---- 224
+W R L + P + W R V+ R+ N
Sbjct: 139 STWTRQFEDLGRESP-LLDIWFADERHGLAVGAYGALLETRDGGQRWEDVSERLDNEDQF 197
Query: 225 ----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
+ D GL ++ G LF SK G T E E P + FG +G
Sbjct: 198 HLNAIAAVKDSGLLVVGEAGILFRSKDWGATWEKLEGPYEGSLFGA--IGTADVGGVLVY 255
Query: 281 GGSGVLLKTTNGGKTW--IREKAAD-NIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++ + G +W I KAA ++ L + + + V+G+ G +L+
Sbjct: 256 GLRGHLFRSADFGDSWEAIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLE 309
>gi|116051077|ref|YP_790093.1| BNR/Asp-box repeat-containing protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|416877586|ref|ZP_11919878.1| BNR/Asp-box repeat-containing protein [Pseudomonas aeruginosa
152504]
gi|421166767|ref|ZP_15624992.1| hypothetical protein PABE177_1811 [Pseudomonas aeruginosa ATCC
700888]
gi|421173724|ref|ZP_15631461.1| hypothetical protein PACI27_1960 [Pseudomonas aeruginosa CI27]
gi|115586298|gb|ABJ12313.1| putative BNR/Asp-box repeat protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|334839403|gb|EGM18089.1| BNR/Asp-box repeat-containing protein [Pseudomonas aeruginosa
152504]
gi|404535248|gb|EKA44949.1| hypothetical protein PACI27_1960 [Pseudomonas aeruginosa CI27]
gi|404536937|gb|EKA46562.1| hypothetical protein PABE177_1811 [Pseudomonas aeruginosa ATCC
700888]
Length = 365
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 138 SDDAGSTWTRQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDVSERL 195
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 196 DNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG------- 246
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +EE+P+++ FG+ D
Sbjct: 247 ----------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFGLSDG 294
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++++GG+++ D + +L V + ++G GV
Sbjct: 295 ALLADGRIVVVGHGGSVLESSDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQGGVH 352
Query: 330 L 330
L
Sbjct: 353 L 353
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 43/234 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GKTW +P+ + + N ++GW VG A +L + DAG
Sbjct: 88 VGDRGHILLSDDDGKTWTQAKVPTRQLLTSVFFVNE-----RKGWAVGHDAQILVSDDAG 142
Query: 193 ESWERI--PLSSQLPGDMAFW---QPHNRA-------------------VARRIQN---- 224
+W R L + P + W + H A V+ R+ N
Sbjct: 143 STWTRQFEDLGREAP-LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQF 201
Query: 225 ----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
+ D GL ++ G LF SK G T E E P + FG +G
Sbjct: 202 HLNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGA--IGTADAGGVLVY 259
Query: 281 GGSGVLLKTTNGGKTW--IREKAAD-NIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++ + G +W I KAA ++ L + + + V+G+ G +L+
Sbjct: 260 GLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLE 313
>gi|416876249|ref|ZP_11919156.1| BNR/Asp-box repeat-containing protein [Pseudomonas aeruginosa
152504]
gi|334841080|gb|EGM19718.1| BNR/Asp-box repeat-containing protein [Pseudomonas aeruginosa
152504]
Length = 361
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 134 SDDAGSTWTRQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDVSERL 191
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 192 DNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG------- 242
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +EE+P+++ FG+ D
Sbjct: 243 ----------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFGLSDG 290
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++++GG+++ D + +L V + ++G GV
Sbjct: 291 ALLADGRIVVVGHGGSVLESSDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQGGVH 348
Query: 330 L 330
L
Sbjct: 349 L 349
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 43/234 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GKTW +P+ + + N ++GW VG A +L + DAG
Sbjct: 84 VGDRGHILLSDDDGKTWTQAKVPTRQLLTSVFFVNE-----RKGWAVGHDAQILVSDDAG 138
Query: 193 ESWERI--PLSSQLPGDMAFW---QPHNRA-------------------VARRIQN---- 224
+W R L + P + W + H A V+ R+ N
Sbjct: 139 STWTRQFEDLGREAP-LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQF 197
Query: 225 ----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
+ D GL ++ G LF SK G T E E P + FG +G
Sbjct: 198 HLNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGA--IGTADAGGVLVY 255
Query: 281 GGSGVLLKTTNGGKTW--IREKAAD-NIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++ + G +W I KAA ++ L + + + V+G+ G +L+
Sbjct: 256 GLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLE 309
>gi|452880158|ref|ZP_21957175.1| hypothetical protein G039_28543 [Pseudomonas aeruginosa VRFPA01]
gi|452183372|gb|EME10390.1| hypothetical protein G039_28543 [Pseudomonas aeruginosa VRFPA01]
Length = 359
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 32/241 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++A S W R + + LLDI F D HG +G LLET+DGG+ W S
Sbjct: 132 SDDAGSTWTRQFEDLGREAPLLDIWFA--DERHGLAVGAYGALLETRDGGQRWEDVSERL 189
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 190 DNEDQFH--LNAIAAVKDSGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG------- 240
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDV 269
+G GG+ + G LF S G + +EE+P+++ FG+ D
Sbjct: 241 ----------AIGTADVGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFGLSDG 288
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G G +L++T+GG+++ D + +L V + ++G GV
Sbjct: 289 ALLADGRIVVVGHGGSVLESTDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQGGVH 346
Query: 330 L 330
L
Sbjct: 347 L 347
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 91/234 (38%), Gaps = 43/234 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GKTW +P+ + + N ++GW VG A + + DAG
Sbjct: 82 VGDRGHILLSDDDGKTWTQAKVPTRQLLTSVFFVNE-----RKGWAVGHDAQIFVSDDAG 136
Query: 193 ESWERI--PLSSQLPGDMAFWQPHNRA----------------------VARRIQN---- 224
+W R L + P + W R V+ R+ N
Sbjct: 137 STWTRQFEDLGREAP-LLDIWFADERHGLAVGAYGALLETRDGGQRWEDVSERLDNEDQF 195
Query: 225 ----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
+ D GL ++ G LF SK G T E E P + FG +G
Sbjct: 196 HLNAIAAVKDSGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGA--IGTADVGGVLVY 253
Query: 281 GGSGVLLKTTNGGKTW--IREKAAD-NIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++ + G +W I KAA ++ L + + + V+G+ G +L+
Sbjct: 254 GLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLE 307
>gi|32473008|ref|NP_866002.1| hypothetical protein RB4278 [Rhodopirellula baltica SH 1]
gi|32397687|emb|CAD73688.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 921
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 109/258 (42%), Gaps = 48/258 (18%)
Query: 89 GLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKT 148
G E P + EE + AW R P D DI F+ D G+ + ++ T+DGG +
Sbjct: 479 GCPEDPLQPEEKM-AWRRTNAP-DASSRTDDIWFI--DPQRGWAANSNGKIIFTEDGGDS 534
Query: 149 WAPRSIPSAEEEDFNYRFNSISFKGKE-GW----IVGKPAILLHTSDAGESWERIPLSSQ 203
W + D F + F ++ GW GK L HT+D G++W+ +
Sbjct: 535 WV------DQLSDPEVYFRCLGFADEQTGWAGTLTAGKR--LFHTTDGGQNWQSV---DN 583
Query: 204 LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
LPG+ QP + A G R G+F K T +E + ++
Sbjct: 584 LPGN----QPSAICGISVVSKDVIYA-SGTNFPNRPTGVF--KTTDAGANWEAIDMEPWS 636
Query: 264 FGILDVGYRSQDEAWAAGGS-------------GVLLKTTNGGKTWIREKAADNIAANL- 309
++D + ++ W GG V+LKTT+GGKTW E D+I+ L
Sbjct: 637 DMLIDCFFTDENTGWVVGGKIEPGEPQIRDNSFPVVLKTTDGGKTW--ENKLDSISGVLV 694
Query: 310 -----YSVKFINEKKGFV 322
+ ++F+N++ GFV
Sbjct: 695 KGEWGWKIQFLNDQIGFV 712
>gi|398893593|ref|ZP_10646215.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM55]
gi|398183958|gb|EJM71426.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM55]
Length = 350
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ + W R + + LLD+ F D+N GF +G +L+ET DGGK W
Sbjct: 121 QILASEDGGATWTRQFEDLKRESPLLDVWF--QDVNSGFAVGAYGSLMETTDGGKHWEDA 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N+I+ G +IVG+ + ++D G++WE++ P L G +
Sbjct: 179 S-DRLDNED-QYHLNAITAVKDAGLFIVGEQGSMFRSADWGQTWEKLEGPYEGSLFGVIG 236
Query: 210 FWQPH 214
QP+
Sbjct: 237 TAQPN 241
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 28/240 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L ++DGG TW R
Sbjct: 84 SDDQGATWTQAKVPTR---ALLTSVFFVDD-KHGWAVGHDAQILASEDGGATWT-RQFED 138
Query: 157 AEEED--FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPH 214
+ E + F ++ G+ VG L+ T+D G+ WE S +L + Q H
Sbjct: 139 LKRESPLLDVWFQDVN----SGFAVGAYGSLMETTDGGKHWE--DASDRLDNED---QYH 189
Query: 215 NRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQ 274
A+ D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 190 LNAITA-------VKDAGLFIVGEQGSMFRSADWGQTWEKLEGPYEGSLFGV--IGTAQP 240
Query: 275 DEAWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+ A G G L ++T+ G TW + KA ++ L +++ ++GN G +++
Sbjct: 241 NTLLAYGLRGNLYRSTDFGSTWEQVELKAERGDLEFGLSGGTLLDDGSIVIVGNGGSVIR 300
>gi|423691330|ref|ZP_17665850.1| BNR/Asp-box repeat domain protein [Pseudomonas fluorescens SS101]
gi|387999606|gb|EIK60935.1| BNR/Asp-box repeat domain protein [Pseudomonas fluorescens SS101]
Length = 345
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + + W + Y + LLD+ F +D NHG +G L+ET D GKTW
Sbjct: 116 QILASTDGGATWTQQYQDLKREAPLLDVWF--NDANHGLAVGAYGALIETTDAGKTWNDV 173
Query: 153 SIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSDAGESWERI 198
S + ED Y N+I+ KG +IVG+ + +SD G++WE++
Sbjct: 174 S-DRLDNED-QYHLNAIAQVKGAGLFIVGEQGSMFRSSDDGQTWEKL 218
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 23/201 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L + DGG TW +
Sbjct: 79 SDDQGTTWAQAKVPTRQ---LLTAVFFVDD-QHGWAVGHDAQILASTDGGATWTQQYQDL 134
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + FN G VG L+ T+DAG++W + S +L + Q H
Sbjct: 135 KREAPLLDVWFN----DANHGLAVGAYGALIETTDAGKTWNDV--SDRLDNED---QYHL 185
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A Q G GL+++ G +F S G T E E P + FG++
Sbjct: 186 NAIA---QVKG----AGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGVISTAQAQTL 238
Query: 276 EAWAAGGSGVLLKTTNGGKTW 296
A+ G G L ++T+ G TW
Sbjct: 239 LAY--GLRGNLYRSTDFGSTW 257
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 27/169 (15%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P L H AV Q +
Sbjct: 60 VVHAGKRLVAVGDRGHILYSDDQGTTWAQAKVPTRQLLTAVFFVDDQHGWAVGHDAQILA 119
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++++++ ++ +LDV + + A G G L
Sbjct: 120 STDGGATW----------------TQQYQDLKREAP---LLDVWFNDANHGLAVGAYGAL 160
Query: 287 LKTTNGGKTWIREKAADNI-AANLYSVKFINEKKG---FVLGNDGVLLQ 331
++TT+ GKTW +D + + Y + I + KG F++G G + +
Sbjct: 161 IETTDAGKTW--NDVSDRLDNEDQYHLNAIAQVKGAGLFIVGEQGSMFR 207
>gi|418292244|ref|ZP_12904194.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
gi|379063677|gb|EHY76420.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
Length = 363
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 27/239 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ ++W + +P +L I FV D HG+ +G +L T DGG++WA +
Sbjct: 94 SDDEGNSWAQAKVPTRQ--LLTAIYFVDD--KHGWAVGHDALVLNTTDGGESWAVQY--- 146
Query: 157 AEEEDFNYRFNSISFK-GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
EE + I F+ + G VG L+ T D G+SW+ I S +L + F H
Sbjct: 147 -EEREREAPLLDIWFEDAQHGIAVGAYGALIETIDGGQSWDDI--SERLDNEDGF---HL 200
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+ IQ GL+++ GG+F S G T E E P Q FG+ VG
Sbjct: 201 NAIT-HIQGS------GLFVVGEMGGMFRSADMGETWERVESPYQGSFFGV--VGGSEPG 251
Query: 276 EAWAAGGSGVLLKTTNGGKTW----IREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++ + G W + + + + L + + + V+G+ G +L
Sbjct: 252 VVVAFGLRGHLFRSADFGNNWDAIELANGNGNALESGLADGSLLRDGRIAVVGHGGAVL 310
>gi|398903910|ref|ZP_10651962.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM50]
gi|398176477|gb|EJM64193.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM50]
Length = 355
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 26/239 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR-SIP 155
S++ W + +P LL F DD HG+ +G +L ++DGG TWA +
Sbjct: 84 SDDQGVTWTQAKVPTRQ---LLTAVFFVDD-KHGWAVGHDAQILASEDGGITWAKQFEDL 139
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
+ E + F ++ G+ VG LL T+D G++WE + S +L + F H
Sbjct: 140 TRESPLLDVWFKDVN----SGFAVGAYGALLETTDGGKNWENV--SDRLDNEDQF---HL 190
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A D G++++ G +F S G T E E P + FG+ +G
Sbjct: 191 NAIAA-------VKDSGIFIVGEQGSMFRSADDGQTWEKLEGPYEGSLFGV--IGTAQPA 241
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G L ++T+ G TW + KAA + L +++ ++GN G +++
Sbjct: 242 TLLAYGLRGNLYRSTDFGSTWEQVELKAARGALEFGLSGATLLDDGSIVIVGNGGSIVR 300
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + + + LLD+ F D+N GF +G LLET DGGK W
Sbjct: 121 QILASEDGGITWAKQFEDLTRESPLLDVWF--KDVNSGFAVGAYGALLETTDGGKNWENV 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ F+ N+I+ G +IVG+ + ++D G++WE++ P L G +
Sbjct: 179 SDRLDNEDQFH--LNAIAAVKDSGIFIVGEQGSMFRSADDGQTWEKLEGPYEGSLFGVIG 236
Query: 210 FWQP 213
QP
Sbjct: 237 TAQP 240
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P L H AV Q
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGVTWTQAKVPTRQLLTAVFFVDDKHGWAVGHDAQ--- 121
Query: 227 WRADGGLWLLVRGGGLFLSKGTGIT--EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSG 284
+ S+ GIT ++FE++ +S +LDV ++ + +A G G
Sbjct: 122 ---------------ILASEDGGITWAKQFEDLTRESP---LLDVWFKDVNSGFAVGAYG 163
Query: 285 VLLKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
LL+TT+GGK W + ++ + +L ++ + + F++G G + +
Sbjct: 164 ALLETTDGGKNWENVSDRLDNEDQFHLNAIAAVKDSGIFIVGEQGSMFR 212
>gi|186473675|ref|YP_001861017.1| hypothetical protein Bphy_4866 [Burkholderia phymatum STM815]
gi|184196007|gb|ACC73971.1| conserved hypothetical protein [Burkholderia phymatum STM815]
Length = 329
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 26/225 (11%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDFNYRFN 167
+PVD L ++FV D +G+ +G ++ T+DGG+TW RS ++ F+ F+
Sbjct: 89 VPVDS--TLTAVSFV--DSKNGWAVGHWGVIIRTRDGGETWVLERSDTKVDQPLFSVHFD 144
Query: 168 SISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
+ GW VG ++LLHT D G +W + S+ +P P + R ++
Sbjct: 145 ----DAEHGWAVGLWSLLLHTEDGGRTWHSV--SAPIP-------PGAKKADRNFFSVVG 191
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-SGVL 286
G L++ G + S+ G T + + G L D GG G +
Sbjct: 192 DGKGSLYIACEQGLVLRSRDGGQTWSYSQTGYD----GSLWSAVVLNDGTLIVGGLRGTI 247
Query: 287 LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++T+ G+TW R ++ + +SV + K DGV+L+
Sbjct: 248 YRSTDNGETWQRSESQSKSSITDFSV---HSGKIVASALDGVVLE 289
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 28/184 (15%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI---PSAEEEDFNYRFNSISFKG 173
L + F DD HG+ +G LL T+DGG+TW S P A++ D N F S+ G
Sbjct: 138 LFSVHF--DDAEHGWAVGLWSLLLHTEDGGRTWHSVSAPIPPGAKKADRN--FFSVVGDG 193
Query: 174 KEG-WIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGG 232
K +I + ++L + D G++W SQ D + W + N G GG
Sbjct: 194 KGSLYIACEQGLVLRSRDGGQTWSY----SQTGYDGSLWSA-------VVLNDGTLIVGG 242
Query: 233 LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
L G ++ S G T + E +S I D S + A+ GV+L++ +G
Sbjct: 243 L-----RGTIYRSTDNGETWQRSESQSKSS---ITDFSVHS-GKIVASALDGVVLESKDG 293
Query: 293 GKTW 296
GKT+
Sbjct: 294 GKTF 297
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 133 LGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
+G +L + DGGKT+ RS+P + ++SF K GW VG +++ T D
Sbjct: 67 VGDHGVVLRSDDGGKTFNQARSVP------VDSTLTAVSFVDSKNGWAVGHWGVIIRTRD 120
Query: 191 AGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
GE+W + S D + H GW GLW L L ++ G
Sbjct: 121 GGETW--VLERSDTKVDQPLFSVHFDDA-----EHGWAV--GLWSL-----LLHTEDGGR 166
Query: 251 TEEFEEVPV------QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADN 304
T P+ R F V + + A G++L++ +GG+TW + +
Sbjct: 167 TWHSVSAPIPPGAKKADRNF--FSVVGDGKGSLYIACEQGLVLRSRDGGQTWSYSQTGYD 224
Query: 305 IAANLYSVKFINEKKGFVLGNDGVLLQ 331
+L+S +N+ V G G + +
Sbjct: 225 --GSLWSAVVLNDGTLIVGGLRGTIYR 249
>gi|304310736|ref|YP_003810334.1| hypothetical protein HDN1F_10940 [gamma proteobacterium HdN1]
gi|301796469|emb|CBL44677.1| Hypothetical protein HDN1F_10940 [gamma proteobacterium HdN1]
Length = 358
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 128/285 (44%), Gaps = 43/285 (15%)
Query: 68 RRQFVSQTATLSLSISLA------ATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIA 121
R +S T SL + LA A G S++ +W + PV ++L
Sbjct: 48 RPAMISSKVTQSLLLDLAVQGESLAAVGERGHVILSKDNGRSWMQSPTPV---TIMLTGV 104
Query: 122 FVPDDLNHGFLLGTRQTLLETKDGGKTWAPR----SIPS---AEEEDF-------NYRFN 167
+PD N+ F++G ++ + D GKTW + +P+ AE++ F
Sbjct: 105 AMPDQ-NNLFVVGHEGLIMHSGDAGKTWEVQYGNPYVPAKEGAEDDAFGGGDPRAGAPLL 163
Query: 168 SISFK-GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ FK G+ +G LLHT D G+SWE S ++ + Q H A+A + +
Sbjct: 164 DVWFKDANHGFALGAYGALLHTQDGGKSWE--DWSDRMDNED---QWHLNALATEDKEL- 217
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
L+++ G +F S G + + E P FG+L VG +DE G G +
Sbjct: 218 ------LYIVGEKGMIFRSLDGGESWQTLESPYDGSLFGVL-VG-PGRDEVMVFGLQGKI 269
Query: 287 LKTTNGGKTWIREKA-ADNIAANLYSVKFINEKKGFVLGNDGVLL 330
++TN G +W++ + DN +L F++ + ++GN+GV+L
Sbjct: 270 YRSTNRGDSWVQVNSPTDN---SLMGGTFLDGRNVVLVGNNGVIL 311
>gi|398946493|ref|ZP_10672084.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM41(2012)]
gi|398154835|gb|EJM43297.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM41(2012)]
Length = 357
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 26/239 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P +L + FV D HG+ +G +L ++DGG TW +
Sbjct: 84 SDDQGTTWTQAKVPTRQ--LLTSVYFVDD--KHGWAVGHDAQILASEDGGVTWTKQFEDL 139
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + F ++ G+ VG LL T+D G++WE + S +L + Q H
Sbjct: 140 KRESPLLDVWFQDVN----SGFAVGAYGALLATTDGGKNWEEV--SDRLDNED---QYHL 190
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A D GL+++ G +F S G T E E P + FG+ +G +
Sbjct: 191 NAIAA-------VKDSGLFIVGEQGSMFRSADWGQTWEKLEGPYEGSLFGV--IGTAQAN 241
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G L ++T+ G TW I KAA + L +++ ++GN G +++
Sbjct: 242 TLLAYGLRGNLFRSTDFGTTWEPIELKAARGALEFGLSGATLLDDGSIVIVGNGGSVIR 300
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + + + LLD+ F D+N GF +G LL T DGGK W
Sbjct: 121 QILASEDGGVTWTKQFEDLKRESPLLDVWF--QDVNSGFAVGAYGALLATTDGGKNWEEV 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI 198
S + ED Y N+I+ G +IVG+ + ++D G++WE++
Sbjct: 179 S-DRLDNED-QYHLNAIAAVKDSGLFIVGEQGSMFRSADWGQTWEKL 223
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P L H AV Q +
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGTTWTQAKVPTRQLLTSVYFVDDKHGWAVGHDAQILA 124
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++FE++ +S +LDV ++ + +A G G L
Sbjct: 125 SEDGGVTW----------------TKQFEDLKRESP---LLDVWFQDVNSGFAVGAYGAL 165
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L TT+GGK W + ++ + +L ++ + + F++G G + +
Sbjct: 166 LATTDGGKNWEEVSDRLDNEDQYHLNAIAAVKDSGLFIVGEQGSMFR 212
>gi|68565863|sp|P84561.1|P2SAF_POPEU RecName: Full=Photosystem II stability/assembly factor HCF136,
chloroplastic
Length = 26
Score = 57.8 bits (138), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/26 (100%), Positives = 26/26 (100%)
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYR 272
GTGITEEFEEVPVQSRGFGILDVGYR
Sbjct: 1 GTGITEEFEEVPVQSRGFGILDVGYR 26
>gi|56478094|ref|YP_159683.1| hypothetical protein ebA4705 [Aromatoleum aromaticum EbN1]
gi|56314137|emb|CAI08782.1| hypothetical protein ebA4705 [Aromatoleum aromaticum EbN1]
Length = 296
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 28/205 (13%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D ++ +G ++ T+DGG++W IP + + +R + G+ W VG+ +
Sbjct: 63 DSDNAMAVGNDGVVIVTRDGGRSWTRAEIPPSTNPNKLFR---VRIAGEAAWAVGEFGAV 119
Query: 186 LHTSDAGESWERI-PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
L ++D G +W R+ P + D+ F D WL+ G L
Sbjct: 120 LRSTDRGANWSRVLPEEDRAWNDITF------------------VDDAGWLVGEFGALMR 161
Query: 245 SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADN 304
+ G T E P + ++ V +R + A G +G LL T +GG +W + A
Sbjct: 162 TADGGATWESVATPNE---VSLMSVAFRDAEHGVAVGLAGTLLVTEDGGASWQQVPAFTR 218
Query: 305 IAANLYSVKFINEKKGFVLGNDGVL 329
+LY+V + +E +G+ G +
Sbjct: 219 --EHLYAVMW-DEDHWLAVGDKGEM 240
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 278 WAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
WAAG G ++++ +GG++W+R+ A N ANL + + +GNDGV++
Sbjct: 27 WAAGTGGKIVRSEDGGQSWVRQ--ASNTEANLQGIAAWDSDNAMAVGNDGVVI 77
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 86/212 (40%), Gaps = 29/212 (13%)
Query: 121 AFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVG 180
A V D + + GT ++ ++DGG++W + A + N + ++ VG
Sbjct: 17 AVVAPDSHVVWAAGTGGKIVRSEDGGQSW----VRQASNTEANLQ-GIAAWDSDNAMAVG 71
Query: 181 KPAILLHTSDAGESWER--IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
+++ T D G SW R IP S+ N+ RI A W +
Sbjct: 72 NDGVVIVTRDGGRSWTRAEIPPSTN----------PNKLFRVRI------AGEAAWAVGE 115
Query: 239 GGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + S G +P + R + D+ + D W G G L++T +GG TW
Sbjct: 116 FGAVLRSTDRGANWS-RVLPEEDRAWN--DITF-VDDAGWLVGEFGALMRTADGGATW-- 169
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
E A +L SV F + + G +G G LL
Sbjct: 170 ESVATPNEVSLMSVAFRDAEHGVAVGLAGTLL 201
>gi|424942452|ref|ZP_18358215.1| putative BNR/Asp-box repeat protein [Pseudomonas aeruginosa
NCMG1179]
gi|451986401|ref|ZP_21934588.1| BNR repeat protein [Pseudomonas aeruginosa 18A]
gi|346058898|dbj|GAA18781.1| putative BNR/Asp-box repeat protein [Pseudomonas aeruginosa
NCMG1179]
gi|451755967|emb|CCQ87111.1| BNR repeat protein [Pseudomonas aeruginosa 18A]
Length = 301
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 30/211 (14%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S++A S W R + + LLDI F D HG +G LLET+DGG+ W
Sbjct: 70 QILVSDDAGSTWTRQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDV 127
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 128 SERLDNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG--- 182
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FG 265
+G GG+ + G LF S G + +EE+P+++ FG
Sbjct: 183 --------------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFG 226
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ D + G G +L++T+GG+++
Sbjct: 227 LSDGALLADGRIVVVGHGGSVLESTDGGRSF 257
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 45/235 (19%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D GKTW +P+ + S+ F ++GW VG A +L + DA
Sbjct: 24 VGDRGHILLSDDDGKTWTQAKVPTRQ------LLTSVFFVNERKGWAVGHDAQILVSDDA 77
Query: 192 GESWERI--PLSSQLPGDMAFW---QPHNRA-------------------VARRIQN--- 224
G +W R L + P + W + H A V+ R+ N
Sbjct: 78 GSTWTRQFEDLGREAP-LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQ 136
Query: 225 -----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
+ D GL ++ G LF SK G T E E P + FG +G
Sbjct: 137 FHLNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGA--IGTADAGGVLV 194
Query: 280 AGGSGVLLKTTNGGKTWIR---EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++ + G +W + A+ ++ L + + + V+G+ G +L+
Sbjct: 195 YGLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLE 249
>gi|386021121|ref|YP_005939145.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri DSM
4166]
gi|327481093|gb|AEA84403.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri DSM
4166]
Length = 332
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 27/239 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ ++W + +P +L I FV D HG+ +G +L T DGG++W +
Sbjct: 63 SDDGGNSWTQAKVPTRQ--LLTAIDFVDD--KHGWAVGHDALVLSTSDGGQSWQVQY--- 115
Query: 157 AEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E+ + + F+ + G VG L+ T D G+SW+ I S +L + F H
Sbjct: 116 -EDREREAPLLDVWFEDTQHGIAVGAYGALIETIDGGQSWDDI--SDRLENEDGF---HL 169
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A I+ G L+++ GG+F S G T E E P Q FG+ VG
Sbjct: 170 NAIAH-IEGSG------LFVVGEMGGMFRSADMGETWEKVESPYQGSFFGV--VGGSEPG 220
Query: 276 EAWAAGGSGVLLKTTNGGKTW----IREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++ + G +W +R + + + L + + + V+G+ G +L
Sbjct: 221 VVIAFGLRGHLFRSADFGDSWEGIELRNGSGHALESGLADGSLLRDGRIAVVGHGGAVL 279
>gi|333900025|ref|YP_004473898.1| hypothetical protein Psefu_1831 [Pseudomonas fulva 12-X]
gi|333115290|gb|AEF21804.1| hypothetical protein Psefu_1831 [Pseudomonas fulva 12-X]
Length = 347
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 92/208 (44%), Gaps = 31/208 (14%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S + + W + + + LLD+ F D HGF +G LLET DGG TW S
Sbjct: 120 SSDGGATWTKQFEDLQREAPLLDVWF--KDAQHGFAIGAYGALLETSDGGATWDDVS-DR 176
Query: 157 AEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
+ ED Y N+I+ G +IVG+ + ++D G+SWE + P L G +A +
Sbjct: 177 LDNED-TYHLNAIADVPGAGLFIVGEAGSVFRSTDGGQSWETLESPYQGSLFGVIASGEA 235
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
+ GL + G LF SK G E +++V + + G G L+ G S
Sbjct: 236 N-----------------GLVMFGLRGHLFHSKDAG--ETWQQVALTTAGGGDLEFGLAS 276
Query: 274 -----QDEAWAAGGSGVLLKTTNGGKTW 296
G G +L++T+ G ++
Sbjct: 277 AATLEDGSIVVVGHGGSVLRSTDHGNSF 304
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L +G R +L + DGG W +P+ + Y + +
Sbjct: 56 LLLDVAHAGKRL---VAVGERGHVLYSDDGGANWTQAKVPTRQMLTAVYFVDD-----QH 107
Query: 176 GWIVGKPAILLHTSDAGESWER 197
GW VG A++L +SD G +W +
Sbjct: 108 GWAVGHDALILASSDGGATWTK 129
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 200 LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKGTGITEEFEEV 257
L +Q F P RAV+ + ++ A G L+ G G + S G +V
Sbjct: 35 LQAQAADAATFSVPSTRAVSSLLLDV---AHAGKRLVAVGERGHVLYSDDGGANWTQAKV 91
Query: 258 PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE 317
P + + V + WA G ++L +++GG TW ++ A L V F +
Sbjct: 92 PTRQM---LTAVYFVDDQHGWAVGHDALILASSDGGATWTKQFEDLQREAPLLDVWFKDA 148
Query: 318 KKGFVLGNDGVLLQ 331
+ GF +G G LL+
Sbjct: 149 QHGFAIGAYGALLE 162
>gi|107102629|ref|ZP_01366547.1| hypothetical protein PaerPA_01003693 [Pseudomonas aeruginosa PACS2]
Length = 301
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 30/211 (14%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S++A S W R + + LLDI F D HG +G LLET+DGG+ W
Sbjct: 70 QILVSDDAGSTWARQFEDLGREAPLLDIWFA--DEEHGLAVGAYGALLETRDGGQHWEDV 127
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 128 SERLDNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG--- 182
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FG 265
+G GG+ + G LF S G + +EE+P+++ FG
Sbjct: 183 --------------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFG 226
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ D + G G +L++T+GG+++
Sbjct: 227 LSDGALLADGRIVVVGHGGSVLESTDGGRSF 257
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 67/202 (33%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D GKTW +P+ + S+ F ++GW VG A +L + DA
Sbjct: 24 VGDRGHILLSDDDGKTWTQAKVPTRQ------LLTSVFFVNERKGWAVGHDAQILVSDDA 77
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G +W AR+ +++G
Sbjct: 78 GSTW-----------------------ARQFEDLG------------------------- 89
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANL 309
E P +LD+ + ++ A G G LL+T +GG+ W + E+ + +L
Sbjct: 90 ---REAP-------LLDIWFADEEHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQFHL 139
Query: 310 YSVKFINEKKGFVLGNDGVLLQ 331
++ + + V+G G L +
Sbjct: 140 NAIAAVKDNGLLVVGEAGSLFR 161
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 99/241 (41%), Gaps = 30/241 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P +L + FV + G+ +G +L + D G TWA +
Sbjct: 33 SDDDGKTWTQAKVPTRQ--LLTSVFFVNE--RKGWAVGHDAQILVSDDAGSTWARQF--- 85
Query: 157 AEEEDFNYR--FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
ED I F +E G VG LL T D G+ WE + S +L + F
Sbjct: 86 ---EDLGREAPLLDIWFADEEHGLAVGAYGALLETRDGGQHWEDV--SERLDNEDQF--- 137
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H A+A N GL ++ G LF SK G T E E P + FG +G
Sbjct: 138 HLNAIAAVKDN-------GLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGA--IGTAD 188
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIR---EKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
G G L ++ + G +W + A+ ++ L + + + V+G+ G +L
Sbjct: 189 AGGVLVYGLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVL 248
Query: 331 Q 331
+
Sbjct: 249 E 249
>gi|110833862|ref|YP_692721.1| BNR repeat-containing protein [Alcanivorax borkumensis SK2]
gi|110646973|emb|CAL16449.1| BNR domain protein [Alcanivorax borkumensis SK2]
Length = 383
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 93/222 (41%), Gaps = 28/222 (12%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEG 176
LDIA+ N +G R +L + D G W PS S+ F + G
Sbjct: 55 LDIAYAD---NRIVAVGDRGKILYSDDQGDHWTQAITPS------EVLLTSVCFADARHG 105
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
W VG A++L +SD GESW + S L GD + + ++
Sbjct: 106 WAVGHDALVLASSDGGESWT-VQYSDPLGGDGDVGLAEEKRDDYSMDDLYGDP------Y 158
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ PV + G +LDV S++ A A GG G LKT++GG TW
Sbjct: 159 SDNAYGDDGGDLYDGSDRVMAPVDTSGAPLLDVFCDSRESAVAVGGYGYFLKTSDGGATW 218
Query: 297 IREKAADNIAA----NLY---SVKFINEKKGFVLGNDGVLLQ 331
+KA D++ +LY +VK N++ +V+G G++
Sbjct: 219 --DKALDSLDNREGWHLYDYTAVKGGNDR--YVVGEKGLMFH 256
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 34/183 (18%)
Query: 105 ERVYIPVDP-GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
+RV PVD G LLD+ D +G L+T DGG TW +++ S + +
Sbjct: 175 DRVMAPVDTSGAPLLDV--FCDSRESAVAVGGYGYFLKTSDGGATW-DKALDSLDNREGW 231
Query: 164 YRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERI------------PLSSQ------L 204
+ ++ + KG + ++VG+ ++ H++D G W+++ P+S L
Sbjct: 232 HLYDYTAVKGGNDRYVVGEKGLMFHSADKGIRWKKLDSPYGGTLFGVTPISDNNVLTYGL 291
Query: 205 PGDMAFWQPHNRA---------VARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFE 255
G++ W NR + R I + ADG + L+ GG+ S+ G +
Sbjct: 292 QGNV--WLTANRGRSWVKIPSKLTRGINDGTVLADGTVVLVTNAGGILTSRDGGQSFSLR 349
Query: 256 EVP 258
+P
Sbjct: 350 YLP 352
>gi|56476498|ref|YP_158087.1| hypothetical protein ebA1929 [Aromatoleum aromaticum EbN1]
gi|56312541|emb|CAI07186.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 374
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 92/222 (41%), Gaps = 41/222 (18%)
Query: 77 TLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTR 136
+L +++AATTG P E A SA R V V V +G R
Sbjct: 22 SLMCQLAVAATTG-QPVPDLMEVAASADVRATSAVQLAVTRAGDRLVS--------VGPR 72
Query: 137 QTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGES 194
T+L + DGGKTW S+PS + ++ F K GW VG I+LH+ D GE+
Sbjct: 73 GTVLLSDDGGKTWRQAGSVPS------SVALTAVCFVNDKLGWAVGHSGIVLHSRDGGET 126
Query: 195 WERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEF 254
W R QL G A Q A A ++ G G L + E+
Sbjct: 127 WVR-----QLEGRQAAQQVLEEAKA--LEATGR----------EGAERLLRDAQRMVEDG 169
Query: 255 EEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ P +L V + ++ +A G G+ L T +GG++W
Sbjct: 170 PDKP-------LLSVSFTNERRGYAVGAYGLALATEDGGQSW 204
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 53/217 (24%)
Query: 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW------------------------- 149
V L + FV D L G+ +G +L ++DGG+TW
Sbjct: 95 VALTAVCFVNDKL--GWAVGHSGIVLHSRDGGETWVRQLEGRQAAQQVLEEAKALEATGR 152
Query: 150 --APRSIPSAE---EEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQ 203
A R + A+ E+ + S+SF + G+ VG + L T D G+SW+ ++
Sbjct: 153 EGAERLLRDAQRMVEDGPDKPLLSVSFTNERRGYAVGAYGLALATEDGGQSWQ--AFMAR 210
Query: 204 LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKGTGITEEFEEVPVQS 261
LP P + + + RADG LLV G G LF S G++ P
Sbjct: 211 LP------NPRGKHLYQ------IRADGA-RLLVSGEQGALFRSDDAGLSFAEVRTPYPG 257
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
FG L + ++D A G G + ++ +GG W +
Sbjct: 258 TFFGALSL---AEDTVLAYGLRGNVWRSGDGGTAWTQ 291
>gi|313108388|ref|ZP_07794404.1| putative BNR/Asp-box repeat protein [Pseudomonas aeruginosa 39016]
gi|386067113|ref|YP_005982417.1| BNR/Asp-box repeat-containing protein [Pseudomonas aeruginosa
NCGM2.S1]
gi|310880906|gb|EFQ39500.1| putative BNR/Asp-box repeat protein [Pseudomonas aeruginosa 39016]
gi|348035672|dbj|BAK91032.1| BNR/Asp-box repeat-containing protein [Pseudomonas aeruginosa
NCGM2.S1]
Length = 301
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 32/245 (13%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S++A S W R + + LLDI F D HG +G LLET+DGG+ W
Sbjct: 70 QILVSDDAGSTWTRQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDV 127
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 128 SERLDNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG--- 182
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FG 265
+G GG+ + G LF S G + +EE+P+++ FG
Sbjct: 183 --------------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFG 226
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
+ D + G G +L++T+GG+++ D + +L V + ++G
Sbjct: 227 LSDGALLADGRIVVVGHGGSVLESTDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQ 284
Query: 326 DGVLL 330
GV L
Sbjct: 285 GGVHL 289
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 45/235 (19%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D GKTW +P+ + S+ F ++GW VG A +L + DA
Sbjct: 24 VGDRGHILLSDDDGKTWTQAKVPTRQ------LLTSVFFVNERKGWAVGHDAQILVSDDA 77
Query: 192 GESWERI--PLSSQLPGDMAFW---QPHNRA-------------------VARRIQN--- 224
G +W R L + P + W + H A V+ R+ N
Sbjct: 78 GSTWTRQFEDLGREAP-LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQ 136
Query: 225 -----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
+ D GL ++ G LF SK G T E E P + FG +G
Sbjct: 137 FHLNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGA--IGTADAGGVLV 194
Query: 280 AGGSGVLLKTTNGGKTWIR---EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++ + G +W + A+ ++ L + + + V+G+ G +L+
Sbjct: 195 YGLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLE 249
>gi|146282755|ref|YP_001172908.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri A1501]
gi|145570960|gb|ABP80066.1| BNR/Asp-box repeat protein [Pseudomonas stutzeri A1501]
Length = 363
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 27/239 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ ++W + +P +L I FV D HG+ +G +L T DGG++W +
Sbjct: 94 SDDGGNSWTQAKVPTRQ--LLTAIDFVDD--KHGWAVGHDALVLSTSDGGQSWQVQY--- 146
Query: 157 AEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E+ + + F+ + G VG L+ T D G+SW+ I S +L + F H
Sbjct: 147 -EDREREAPLLDVWFEDTQHGIAVGAYGALIETIDGGQSWDDI--SDRLENEDGF---HL 200
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A I+ G L+++ GG+F S G T E E P Q FG+ VG
Sbjct: 201 NAIAH-IEGSG------LFVVGEMGGMFRSADMGETWEKVESPYQGSFFGV--VGGSEPG 251
Query: 276 EAWAAGGSGVLLKTTNGGKTW----IREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++ + G +W +R + + L + + + V+G+ G +L
Sbjct: 252 VVIAFGLRGHLFRSADFGDSWEGIELRNGNGHALESGLADGSLLRDGRIAVVGHGGAVL 310
>gi|146281012|ref|YP_001171165.1| glycosyl hydrolase [Pseudomonas stutzeri A1501]
gi|145569217|gb|ABP78323.1| glycosyl hydrolase [Pseudomonas stutzeri A1501]
Length = 358
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 94/211 (44%), Gaps = 46/211 (21%)
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTS 189
++G R +L + + G+ W S+P + + ++ F ++GW VG ++LH+
Sbjct: 59 IVVGQRGHILYSDNAGQHWQQASVPVSSD------LIAVHFPTPQQGWAVGHDGVVLHSR 112
Query: 190 DAGESWERIPLSSQL-PGDMAFWQ------PHNRAVARRIQNMGWRADGGLWLLVRGGGL 242
DAGE+W R QL P +A +Q P + A+A
Sbjct: 113 DAGETWSRQLDGRQLGPLMLAHYQKLATEKPDDAALA----------------------- 149
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REK 300
+ E + V V+ LDV + ++ + G ++ +T +GG+ W E+
Sbjct: 150 ------ALVNESQRVAVEGADKPFLDVWFENEQVGYIVGAFNLIFRTADGGQHWTPWLER 203
Query: 301 AADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
A+ +LY+++ + ++ F++G G++L+
Sbjct: 204 TANPSFLHLYALRPVGQEL-FIVGEQGLVLK 233
>gi|395650192|ref|ZP_10438042.1| hypothetical protein Pext1s1_16500 [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 331
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + + W + Y + LLD+ F +D NHG +G L+ET DGG TW
Sbjct: 101 QILASTDGGATWTQQYQDLKREAPLLDVWF--NDANHGLAVGAYGALIETTDGGITWEDV 158
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ F+ N+I+ G +IVG+ + +SD G++WE++ P L G ++
Sbjct: 159 SDRLDNEDQFH--LNAIAHIKDAGLFIVGEQGSMFRSSDDGQTWEKLQGPYEGSLFGVIS 216
Query: 210 FWQPHN 215
QP
Sbjct: 217 TAQPQT 222
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 88/209 (42%), Gaps = 25/209 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P LL F DD HG+ +G +L + DGG TW +
Sbjct: 64 SDDQGRTWTQAKVPTRQ---LLTAVFFVDD-KHGWAVGHDAQILASTDGGATWTQQYQDL 119
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + FN G VG L+ T+D G +WE + S +L + F H
Sbjct: 120 KREAPLLDVWFND----ANHGLAVGAYGALIETTDGGITWEDV--SDRLDNEDQF---HL 170
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A D GL+++ G +F S G T E + P + FG++
Sbjct: 171 NAIAH-------IKDAGLFIVGEQGSMFRSSDDGQTWEKLQGPYEGSLFGVISTAQPQTL 223
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAA 302
A+ G G L ++T+ G TW + KAA
Sbjct: 224 LAY--GLRGNLYRSTDFGTTWEQVELKAA 250
>gi|146307958|ref|YP_001188423.1| hypothetical protein Pmen_2936 [Pseudomonas mendocina ymp]
gi|145576159|gb|ABP85691.1| uncharacterized protein [Pseudomonas mendocina ymp]
Length = 363
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 24/202 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ +W + +P +L + FV D HG+++G +L T DGGKTW +
Sbjct: 94 SDDQGQSWLQAKVPTRQ--MLTSLFFV--DAQHGWVVGHDAQILATTDGGKTWTKQ---- 145
Query: 157 AEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E+ + + FK + G+ VG LL T+D G +WE + S +L + A+ H
Sbjct: 146 FEDLEREAPLLDVWFKDLQTGYAVGAYGALLETTDGGANWEDV--SDRLDNEDAY---HL 200
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQ 274
A+ D GL+++ GG+F S+ G T E E+ P + FG L G
Sbjct: 201 NAITA-------VKDTGLFIVGELGGMFRSRDWGQTWEAVEDKPYEGSLFGAL--GTDEA 251
Query: 275 DEAWAAGGSGVLLKTTNGGKTW 296
G G L ++T+ G +W
Sbjct: 252 GTLLVYGLRGHLFRSTDFGDSW 273
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 23/153 (15%)
Query: 179 VGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
VG +L++ D G+SW ++P L H V Q + G W
Sbjct: 85 VGDRGHVLYSDDQGQSWLQAKVPTRQMLTSLFFVDAQHGWVVGHDAQILATTDGGKTW-- 142
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
T++FE++ R +LDV ++ +A G G LL+TT+GG W
Sbjct: 143 --------------TKQFEDL---EREAPLLDVWFKDLQTGYAVGAYGALLETTDGGANW 185
Query: 297 --IREKAADNIAANLYSVKFINEKKGFVLGNDG 327
+ ++ + A +L ++ + + F++G G
Sbjct: 186 EDVSDRLDNEDAYHLNAITAVKDTGLFIVGELG 218
>gi|421139714|ref|ZP_15599744.1| Glycosyl hydrolase [Pseudomonas fluorescens BBc6R8]
gi|404509087|gb|EKA23027.1| Glycosyl hydrolase [Pseudomonas fluorescens BBc6R8]
Length = 346
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 23/201 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L T DGG TW +
Sbjct: 79 SDDQGATWTQAKVPTRQ---LLTAVFFADD-QHGWAVGHDAQILATTDGGVTWTQQFQDL 134
Query: 157 AEEEDFNYRFNSISFK-GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + FK G+ VG L+ T+D G++W+ + S +L + Q H
Sbjct: 135 KREA----PLLDVWFKDASNGFAVGAYGALIETTDGGKTWDDV--SDRLDNED---QYHL 185
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A+ D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 186 NAIAQ-------VKDAGLFIVGEQGSMFRSHDEGQTWEKLEGPYEGSLFGV--IGTAQAQ 236
Query: 276 EAWAAGGSGVLLKTTNGGKTW 296
A G G L ++T+ G TW
Sbjct: 237 TLLAYGLRGNLFRSTDFGSTW 257
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 23/168 (13%)
Query: 168 SISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNM 225
+ GK VG +L++ D G +W ++P L H AV Q +
Sbjct: 59 DVVHAGKRLVAVGDRGHILYSDDQGATWTQAKVPTRQLLTAVFFADDQHGWAVGHDAQIL 118
Query: 226 GWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
G W T++F+++ ++ +LDV ++ +A G G
Sbjct: 119 ATTDGGVTW----------------TQQFQDLKREAP---LLDVWFKDASNGFAVGAYGA 159
Query: 286 LLKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L++TT+GGKTW + ++ + +L ++ + + F++G G + +
Sbjct: 160 LIETTDGGKTWDDVSDRLDNEDQYHLNAIAQVKDAGLFIVGEQGSMFR 207
>gi|422591989|ref|ZP_16666622.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330879752|gb|EGH13901.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 326
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 87 TTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGG 146
T G Q S + +W + + + LLD+ F DLN+GF +G LL T DGG
Sbjct: 90 TVGHDAQILASSDGGKSWNKQFEDLKREAPLLDVWF--KDLNNGFAIGAYGALLNTSDGG 147
Query: 147 KTWAPRSIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQ 203
+ W + + + + Y N I+ K +IVG+ + +SD G++WE++ P
Sbjct: 148 QHW--QDVSDRLDNEDQYHLNGIAQIKDAGLFIVGEAGSMFRSSDEGQTWEKLEGPYQGS 205
Query: 204 LPGDMAFWQP 213
L G + QP
Sbjct: 206 LFGVVGTAQP 215
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 106/253 (41%), Gaps = 46/253 (18%)
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
G +LLD+A L +G +L + D GKTW+ +P+ + ++ F
Sbjct: 34 GGLLLDVAHAGARL---VAVGDHGHILYSDDQGKTWSQARVPTRQ------LLTAVFFVD 84
Query: 174 KE-GWIVGKPAILLHTSDAGESWERI--PLSSQLP-GDMAFWQPHN-------------- 215
++ GW VG A +L +SD G+SW + L + P D+ F +N
Sbjct: 85 EQHGWTVGHDAQILASSDGGKSWNKQFEDLKREAPLLDVWFKDLNNGFAIGAYGALLNTS 144
Query: 216 ------RAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQS 261
+ V+ R+ N + D GL+++ G +F S G T E E P Q
Sbjct: 145 DGGQHWQDVSDRLDNEDQYHLNGIAQIKDAGLFIVGEAGSMFRSSDEGQTWEKLEGPYQG 204
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEK 318
FG+ VG A G G L ++++ G TW I A + L S +++
Sbjct: 205 SLFGV--VGTAQPASLLAYGLRGNLFRSSDFGDTWQPIELNGARGPVEFGLASATLLSDG 262
Query: 319 KGFVLGNDGVLLQ 331
++GN G +++
Sbjct: 263 TLVLVGNGGSVMR 275
>gi|398955868|ref|ZP_10676651.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM33]
gi|398150523|gb|EJM39113.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM33]
Length = 358
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 34/203 (16%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
+G R +L + D G+ W +P + + ++ F + GW VG ++LH+SD
Sbjct: 61 VGQRGHILYSDDAGQHWQQAQVPVSCD------LLAVHFPTPQLGWAVGHDGVVLHSSDG 114
Query: 192 GESWERIPLSSQL-PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
GE+W R Q+ P +A++Q R++ AD L R ++ +
Sbjct: 115 GETWRRQLDGRQVGPIMLAYYQ-------RQLDGHPDDAD----LQTR-----VADAQRM 158
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAAN 308
EE + P LDV + ++ + G ++ +T +GG W + E+ + A N
Sbjct: 159 VEEGADKP-------FLDVWFENERVGYIVGAFNLIFRTDDGGLRWTPLLERTDNPGALN 211
Query: 309 LYSVKFINEKKGFVLGNDGVLLQ 331
LY+V+ + ++ F++G G++++
Sbjct: 212 LYAVRPVGDEL-FIVGEQGLVMK 233
>gi|410092555|ref|ZP_11289078.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas viridiflava
UASWS0038]
gi|409760063|gb|EKN45229.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas viridiflava
UASWS0038]
Length = 348
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 117/278 (42%), Gaps = 27/278 (9%)
Query: 24 PRLNRTNAQAQQPRFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSIS 83
P RT +A I + S P ++ + ++++S++ + + L L I+
Sbjct: 4 PVYRRTRLRAGMSLAILMACTVSAPLMAATDPAPAATTSTTGIYAIESAKAARGLLLDIA 63
Query: 84 LAAT----TGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTL 139
A G + S++ +W + +P +L + FV D HG+ +G +
Sbjct: 64 HAGARLVAVGDHGHILYSDDQGKSWVQARVPTRQ--LLTAVYFV--DEQHGWAVGHDAQI 119
Query: 140 LETKDGGKTWAPRSIPSAEEEDF-NYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
L + DGGK W + A E + F + + G VG LL T+D G+ WE +
Sbjct: 120 LASSDGGKNWNKQFEDLAREAPLLDVWFKDL----QNGLAVGAYGALLTTTDGGQHWEDV 175
Query: 199 PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVP 258
S +L + Q H +A+ D GL+++ G +F S G T E + P
Sbjct: 176 --SDRLDNED---QYHLNGIAQV-------KDAGLFIVGEAGSMFRSHDEGQTWEKLDGP 223
Query: 259 VQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
Q FG+ +G S A G G L ++T+ G TW
Sbjct: 224 YQGSLFGV--IGTASPSTLLAYGLRGNLFRSTDFGDTW 259
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
I+ G VG +L++ D G+SW R+P L + H AV Q +
Sbjct: 62 IAHAGARLVAVGDHGHILYSDDQGKSWVQARVPTRQLLTAVYFVDEQHGWAVGHDAQILA 121
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W ++FE++ +R +LDV ++ A G G L
Sbjct: 122 SSDGGKNW----------------NKQFEDL---AREAPLLDVWFKDLQNGLAVGAYGAL 162
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L TT+GG+ W + ++ + +L + + + F++G G + +
Sbjct: 163 LTTTDGGQHWEDVSDRLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFR 209
>gi|390943052|ref|YP_006406813.1| putative photosystem II stability/assembly factor-like protein
[Belliella baltica DSM 15883]
gi|390416480|gb|AFL84058.1| putative photosystem II stability/assembly factor-like protein
[Belliella baltica DSM 15883]
Length = 935
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 33/219 (15%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE- 175
L I++V D++ G++ G Q +L+T DGG +W + P+ + + F +
Sbjct: 33 LTGISWVNDEV--GYMSG-DQVILKTIDGGLSWIEQEAPTK------VKMQGVDFYNENL 83
Query: 176 GWIVGKPAILLHTSDAGESWERIPL-SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
G IVG+ + T +AG +W I L ++Q + F N+ A + + +G ++
Sbjct: 84 GLIVGENGQVYRTENAGNTWTLISLATTQTLRKVKF---LNQISAYIVGD-----NGEVY 135
Query: 235 LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGK 294
GG + + G T + + + + D + A SG +L+T N G
Sbjct: 136 RSTNGGQSWAKQNVGTTADLTGLT------------FANADTGYVATSSGAILRTVNQGN 183
Query: 295 TWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
TW ++ N V F N K GF +GN+G +L+ L
Sbjct: 184 TWTTLNTQNSRPLN--DVYFTNGKIGFAVGNNGTILKTL 220
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 39/240 (16%)
Query: 96 KSEEALSAWERVYIPVDPGVV--LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS 153
K+ +A + WE PV+ G L+ +AF ++N G ++G TLL T + G T+ +
Sbjct: 218 KTLDAGANWE----PVNSGTERNLIGVAFNRANINLGVVVGENATLLRTTNAGLTFDGIN 273
Query: 154 IPSAEEEDFNYRFNSISFKGKEGWI--VGKPAILLHTSDAGESWERIPLSSQLPGDMAFW 211
+ + ++ + + SF+ + VG LL ++++G SW + +A
Sbjct: 274 VNNTQD------YLAASFRATSNVVFAVGTNGYLLSSTNSGGSWAQ---------RLAGV 318
Query: 212 QPHNRAVARRIQNMGWRADG-GLWLLVRGGGL-FLSKGTGITEEFEEVPVQSRGFGILDV 269
A R +N+G+ G +L+ GG+ + + +T +F + + FG
Sbjct: 319 DSDYNATQFRTENLGYIVGPIGKFLVTSNGGVSIIDRSRPLTIDFNNLYFTTNAFG---- 374
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ G +G L+T+N G W N NL + F N G+V+G++G +
Sbjct: 375 --------YIIGQNGTALRTSNSGSNWTSLNL--NTEENLNGIYFFNNNTGYVVGDNGFI 424
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 35/231 (15%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILL 186
N G+++G L T +GG + RS P FN++ F G+I+G+ L
Sbjct: 331 NLGYIVGPIGKFLVTSNGGVSIIDRSRP------LTIDFNNLYFTTNAFGYIIGQNGTAL 384
Query: 187 HTSDAGESWERIPLSSQ---------------LPGDMAFWQPHNRAVAR----RIQNMGW 227
TS++G +W + L+++ + GD F + A + N
Sbjct: 385 RTSNSGSNWTSLNLNTEENLNGIYFFNNNTGYVVGDNGFISKTDNAGVNWQVVQASNTNV 444
Query: 228 RADGGLWL-----LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG 282
+ L+ +V G G F+S+ G +E+ +V V + ++D+ A A G
Sbjct: 445 NLNEILYFDFAFGVVIGNGGFVSRTEG-GQEWNQVAVPTTED-LIDLTLLDDSTAVAIGN 502
Query: 283 SGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
SG ++K+ + G TW E + + N V F++E GF+ G G++L+ L
Sbjct: 503 SGTIIKSVDKGLTW--ESISTSYTENFTGVDFLDESVGFISGGKGLILKTL 551
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 51/236 (21%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTS 189
G+++G T L T + G W ++ + E + Y FN+ G++VG + T
Sbjct: 374 GYIIGQNGTALRTSNSGSNWTSLNLNTEENLNGIYFFNN-----NTGYVVGDNGFISKTD 428
Query: 190 DAGESWE-------RIPLSSQLPGDMAFWQPHNRAVARRIQNMGW--RADGGL-WLLV-- 237
+AG +W+ + L+ L D AF I N G+ R +GG W V
Sbjct: 429 NAGVNWQVVQASNTNVNLNEILYFDFAF--------GVVIGNGGFVSRTEGGQEWNQVAV 480
Query: 238 ---------------------RGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDE 276
G + S G+T E G V + +
Sbjct: 481 PTTEDLIDLTLLDDSTAVAIGNSGTIIKSVDKGLTWESISTSYTENFTG---VDFLDESV 537
Query: 277 AWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+ +GG G++LKT +GG+TW EK + + F + G+ +G G L QY
Sbjct: 538 GFISGGKGLILKTLDGGETW--EKMPTGTFQDFTDLSFGSLSIGYAVGERGTLFQY 591
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 31/205 (15%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHT 188
G++ + +L T + G TW + ++ N + F GK G+ VG +L T
Sbjct: 166 GYVATSSGAILRTVNQGNTWTTLNTQNSRP------LNDVYFTNGKIGFAVGNNGTILKT 219
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW-RADGGLWLLV-RGGGLFLSK 246
DAG +WE P N R + + + RA+ L ++V L +
Sbjct: 220 LDAGANWE----------------PVNSGTERNLIGVAFNRANINLGVVVGENATLLRTT 263
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYR-SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNI 305
G+T F+ + V + L +R + + +A G +G LL +TN G +W + A +
Sbjct: 264 NAGLT--FDGINVNNTQ-DYLAASFRATSNVVFAVGTNGYLLSSTNSGGSWAQRLAG--V 318
Query: 306 AANLYSVKFINEKKGFVLGNDGVLL 330
++ + +F E G+++G G L
Sbjct: 319 DSDYNATQFRTENLGYIVGPIGKFL 343
>gi|339494388|ref|YP_004714681.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
gi|338801760|gb|AEJ05592.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
Length = 332
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 27/239 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ ++W + +P +L I FV D HG+ +G +L T DGG++W +
Sbjct: 63 SDDGGNSWTQAKVPTRQ--LLTAIDFVDD--KHGWAVGHDALVLSTSDGGQSWQVQY--- 115
Query: 157 AEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E+ + + F+ + G VG L+ T D G+SW+ I S +L + F H
Sbjct: 116 -EDREREAPLLDVWFEDTQHGIAVGAYGALIETIDGGQSWDDI--SDRLENEDGF---HL 169
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A I+ G L+++ GG+F S G T E E P Q FG+ VG
Sbjct: 170 NAIAH-IEGSG------LFVVGEMGGMFRSADMGETWEKVESPYQGSFFGV--VGGSEPG 220
Query: 276 EAWAAGGSGVLLKTTNGGKTW----IREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++ + G +W +R + + L + + + V+G+ G +L
Sbjct: 221 VVIAFGLRGHLFRSADFGDSWEGIELRNGNGHALESGLADGSLLRDGRIAVVGHGGAVL 279
>gi|358638168|dbj|BAL25465.1| hypothetical protein AZKH_3173 [Azoarcus sp. KH32C]
Length = 345
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 35/269 (13%)
Query: 65 SLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDI-AFV 123
++ RR AT S S++ A G Y + +S++ W + P L + A
Sbjct: 58 AIERRDVFYGVATPSPSVAWA--VGYYGKIVRSDDGGKTWT-----IQPNKALAHLQAIS 110
Query: 124 PDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPA 183
D +G T++ T DGG +W +P ++ N ++ G W VG+
Sbjct: 111 AWDDKRAVAVGNAGTVIVTSDGGASWHEVQVPRSDVA--NKLLQVRAYPGGVAWAVGEVG 168
Query: 184 ILLHTSDAGESWER-IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 242
+L T D GE+W R +P Q D+ F +G DG W++ G +
Sbjct: 169 AVLLTRDFGETWTRAMPEKDQAWNDVFF--------------LG--EDG--WMVGEFGQM 210
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
++ G + PV+S ++ V +R A G SGV+L T +GG +W K A
Sbjct: 211 LRTRDGGASWAPMASPVKSS---LMSVQFRDAQHGVAVGLSGVVLVTADGGASW---KQA 264
Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+ + + + +G+ GV ++
Sbjct: 265 PRVTVEHLNGVVWDGARWLAVGDKGVRVE 293
>gi|443471883|ref|ZP_21061920.1| BNR repeat protein [Pseudomonas pseudoalcaligenes KF707]
gi|442902108|gb|ELS27749.1| BNR repeat protein [Pseudomonas pseudoalcaligenes KF707]
Length = 381
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 41/208 (19%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDF-NYRFNSISFKGKEGWIVGKPAILLHTSDA 191
+G R + ++DGGK+W R +PS D RF+ GW+VG ++LLHT+D
Sbjct: 78 VGPRGLIQRSEDGGKSW--RQVPSPVSSDLVQVRFS----DALNGWVVGHDSVLLHTADG 131
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNM-GWRADGGLWL---LVRGGGLFLSKG 247
G SW+ QL G R+V +Q+ G RA+ G + ++R L +S
Sbjct: 132 GASWK-----VQLDG---------RSVLALLQDQYGRRANAGDQVADDMLREINLAMS-- 175
Query: 248 TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNI 305
T T + P LDV + + G G++L + + G TW ++ ++
Sbjct: 176 TSATPDVLAAP-------FLDVLFDDNGNGFVVGAFGMILHSRDAGTTWEPWVDRTSNER 228
Query: 306 AANLYSVKFINEKKG--FVLGNDGVLLQ 331
+LY + E++G +V G G+L++
Sbjct: 229 RMHLYGLA---EREGVFYVSGEQGLLMR 253
>gi|399003775|ref|ZP_10706426.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM18]
gi|398121825|gb|EJM11441.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM18]
Length = 355
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + + + LLD+ F D+N GF +G LLET DGGK W
Sbjct: 121 QILASEDGGLTWTKQFEDLRRESPLLDVWF--KDVNSGFAVGAYGALLETTDGGKNWEDA 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N+I+ G +IVG+ + ++D G++WE++ P L G +
Sbjct: 179 S-DRLDNED-QYHLNAIAAVKDSGIFIVGEQGSMFRSADEGQTWEKLEGPYEGSLFGVIG 236
Query: 210 FWQP 213
QP
Sbjct: 237 TAQP 240
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 30/241 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L ++DGG TW +
Sbjct: 84 SDDQGATWTQAKVPTRQ---LLTAVFFVDD-KHGWAVGHDAQILASEDGGLTW------T 133
Query: 157 AEEEDFNYR--FNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + FK G+ VG LL T+D G++WE S +L + Q
Sbjct: 134 KQFEDLRRESPLLDVWFKDVNSGFAVGAYGALLETTDGGKNWE--DASDRLDNED---QY 188
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H A+A D G++++ G +F S G T E E P + FG+ +G
Sbjct: 189 HLNAIAA-------VKDSGIFIVGEQGSMFRSADEGQTWEKLEGPYEGSLFGV--IGTAQ 239
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLL 330
G G L ++T+ G TW + KAA + L +++ ++GN G ++
Sbjct: 240 PATLLVYGLRGNLYRSTDFGTTWEQVELKAARGALEFGLSGATLLDDGSIVIVGNGGSVI 299
Query: 331 Q 331
+
Sbjct: 300 R 300
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P L H AV Q +
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGATWTQAKVPTRQLLTAVFFVDDKHGWAVGHDAQILA 124
Query: 227 WRADGGL-WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
DGGL W T++FE++ +S +LDV ++ + +A G G
Sbjct: 125 -SEDGGLTW----------------TKQFEDLRRESP---LLDVWFKDVNSGFAVGAYGA 164
Query: 286 LLKTTNGGKTWIREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
LL+TT+GGK W E A+D + +L ++ + + F++G G + +
Sbjct: 165 LLETTDGGKNW--EDASDRLDNEDQYHLNAIAAVKDSGIFIVGEQGSMFR 212
>gi|408373380|ref|ZP_11171077.1| BNR repeat-containing protein [Alcanivorax hongdengensis A-11-3]
gi|407766837|gb|EKF75277.1| BNR repeat-containing protein [Alcanivorax hongdengensis A-11-3]
Length = 346
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 35/206 (16%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G R ++ + D G W + P+ ++ F + GW VG A++L T D
Sbjct: 42 VGDRGKIIYSDDQGSHWKVAATPT------QVLLTAVCFADPRHGWAVGHDAVVLGTDDG 95
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
GE+W + S L G+ + + + G + G G
Sbjct: 96 GETWT-LEYSDPLGGE-----------GDQQDDTAYDDSGDM-------GDIYGDPYGDD 136
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIRE-KAADNIAA-NL 309
E PV + G +LDV +D A A GG G L+T +GG+ W ++ K DN+ +L
Sbjct: 137 SYDEPAPVDTSGAPLLDVYCEGRDRAVAVGGYGYFLETQDGGQNWKKDLKRLDNVDGWHL 196
Query: 310 YSVKFINEKKG----FVLGNDGVLLQ 331
YS N K G +V G GV+ +
Sbjct: 197 YS---YNGKAGLDERYVTGEKGVIFR 219
>gi|56475607|ref|YP_157196.1| hypothetical protein ebA329 [Aromatoleum aromaticum EbN1]
gi|56311650|emb|CAI06295.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 433
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 133 LGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
+G R T+L + DGGKTW S+PS + ++ F K GW VG I+LH+ D
Sbjct: 128 VGPRGTVLLSDDGGKTWRQAGSVPS------SVALTAVCFVNDKLGWAVGHSGIVLHSRD 181
Query: 191 AGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
GE+W R QL G A Q A A ++ G G L +
Sbjct: 182 GGETWVR-----QLEGRQAAQQVLEEAKA--LEATGR----------EGAERLLRDAQRM 224
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
E+ + P +L V ++++ + G G+ L T +GG++W
Sbjct: 225 VEDGPDKP-------LLSVSFKNERRGYVVGAYGLALATNDGGQSW 263
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 53/215 (24%)
Query: 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW------------------------- 149
V L + FV D L G+ +G +L ++DGG+TW
Sbjct: 154 VALTAVCFVNDKL--GWAVGHSGIVLHSRDGGETWVRQLEGRQAAQQVLEEAKALEATGR 211
Query: 150 --APRSIPSAE---EEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQ 203
A R + A+ E+ + S+SFK + G++VG + L T+D G+SW+ ++
Sbjct: 212 EGAERLLRDAQRMVEDGPDKPLLSVSFKNERRGYVVGAYGLALATNDGGQSWQ--AFMAR 269
Query: 204 LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKGTGITEEFEEVPVQS 261
LP P + + + RADG LL+ G G LF S G++ P
Sbjct: 270 LP------NPRGKHLYQ------VRADGAR-LLISGEQGALFRSDDAGLSFAEVRTPYPG 316
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
FG L + ++D A G G + ++ +GG W
Sbjct: 317 TFFGALSL---AEDTVLAYGLRGNVWRSGDGGTAW 348
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
R+ D + G G +L + +GGKTW R+ + + L +V F+N+K G+ +G+ G++L
Sbjct: 120 RAGDRLVSVGPRGTVLLSDDGGKTW-RQAGSVPSSVALTAVCFVNDKLGWAVGHSGIVLH 178
>gi|424071420|ref|ZP_17808845.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|407998882|gb|EKG39279.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
Length = 348
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 135/314 (42%), Gaps = 34/314 (10%)
Query: 28 RTNAQAQQPRFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAA- 86
RT A + S +LP+ S + +++ ++ + + + + TL L ++ A
Sbjct: 8 RTRLYAGMSLAVVASSLFALPAMAGSEALATAVAADAPVYAIESAKASRTLLLDVAHAGA 67
Query: 87 ---TTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETK 143
G + S++ + W + +P LL F D+ HG+ +G +L +
Sbjct: 68 RLVVVGDHGHILLSDDQGNTWSQARVPTRQ---LLTAVFFVDE-QHGWAVGHDAQVLASS 123
Query: 144 DGGKTWAPRSIPSAEEEDFNYR--FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPL 200
DGGKTW + + ED + FK + G +G +LL T+D G+ WE +
Sbjct: 124 DGGKTW------NKQFEDLKREAPLLDVWFKDLDNGLAIGAYGLLLSTADGGQHWEDV-- 175
Query: 201 SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQ 260
S +L + Q H +A+ D GL+++ G +F S+ G T E + P Q
Sbjct: 176 SDRLDNED---QYHLNGIAQ-------VKDAGLFIVGEAGSMFRSRDEGQTWEKVDGPYQ 225
Query: 261 SRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINE 317
FG+ +G A G G L ++++ G +W I K A + L S + +
Sbjct: 226 GSLFGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASATLLAD 283
Query: 318 KKGFVLGNDGVLLQ 331
++GN G +++
Sbjct: 284 GSLVLVGNGGSVMR 297
>gi|296388422|ref|ZP_06877897.1| BNR/Asp-box repeat-containing protein [Pseudomonas aeruginosa PAb1]
Length = 301
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 32/245 (13%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S++A S W R + + LLDI F D HG +G LLET+DGG+ W
Sbjct: 70 QILVSDDAGSTWTRQFEDLGREAPLLDIWFA--DEQHGLAVGAYGALLETRDGGQHWEDV 127
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ F+ N+I+ G +VG+ L + D G +WE++ P L G
Sbjct: 128 SERLDNEDQFH--LNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFG--- 182
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FG 265
+G GG+ + G LF S G + +EE+P+++ FG
Sbjct: 183 --------------AIGTADAGGVLVYGLRGHLFRSADFG--DSWEEIPLKAASGDLEFG 226
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
+ D + G G +L++++GG+++ D + +L V + ++G
Sbjct: 227 LSDGALLADGRIVVVGHGGSVLESSDGGRSFSVFNRPDRL--SLAGVSATGDGHLILVGQ 284
Query: 326 DGVLL 330
GV L
Sbjct: 285 GGVHL 289
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 45/235 (19%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D GKTW +P+ + S+ F ++GW VG A +L + DA
Sbjct: 24 VGDRGHILLSDDDGKTWTQAKVPTRQ------LLTSVFFVNERKGWAVGHDAQILVSDDA 77
Query: 192 GESWERI--PLSSQLPGDMAFW---QPHNRA-------------------VARRIQN--- 224
G +W R L + P + W + H A V+ R+ N
Sbjct: 78 GSTWTRQFEDLGREAP-LLDIWFADEQHGLAVGAYGALLETRDGGQHWEDVSERLDNEDQ 136
Query: 225 -----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
+ D GL ++ G LF SK G T E E P + FG +G
Sbjct: 137 FHLNAIAAVKDNGLLVVGEAGSLFRSKDWGATWEKLEGPYEGSLFGA--IGTADAGGVLV 194
Query: 280 AGGSGVLLKTTNGGKTWIR---EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++ + G +W + A+ ++ L + + + V+G+ G +L+
Sbjct: 195 YGLRGHLFRSADFGDSWEEIPLKAASGDLEFGLSDGALLADGRIVVVGHGGSVLE 249
>gi|406596880|ref|YP_006748010.1| BNR repeat-containing protein [Alteromonas macleodii ATCC 27126]
gi|406374201|gb|AFS37456.1| BNR repeat-containing protein [Alteromonas macleodii ATCC 27126]
Length = 348
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 34/259 (13%)
Query: 79 SLSISLAATTGL-YEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+++ +AAT + Y A +EEA A P+ VLLDI D ++G R
Sbjct: 4 TIAACIAATFAVNYSTTAIAEEAFMA------PLVEQSVLLDI----DADTFVVIVGERG 53
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
+L +KDG + + +++P+ + + G W VG A++LH+SD GE+WE
Sbjct: 54 HVLVSKDG-EAFTQKAVPTQS------TLTATTVVGDNIWAVGHDAVILHSSDKGETWEI 106
Query: 198 IPLSSQLPG---DMAFWQPHNRAVARRIQNMGWRA-DGG-LWLLVRGGGL-------FLS 245
L D+ F+ + +A + +R DGG W R L +L
Sbjct: 107 QNFQPDLQRPFLDVLFFN-EKQGIATGAYGLFYRTLDGGKTWTAERHASLLDPMDQEYLE 165
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNI 305
E+F + ++S L+ D + AG +G+L K+TN G++W E+ +
Sbjct: 166 DIRKEDEDFYQQELESI-LPHLNRITLDGDTLYLAGEAGLLAKSTNMGESW--ERYYVDY 222
Query: 306 AANLYSVKFINEKKGFVLG 324
+ + +K ++E +G
Sbjct: 223 TGSFFDIKPLDENTVLAVG 241
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 238 RGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI 297
RG L G T++ VP QS VG D WA G V+L +++ G+TW
Sbjct: 52 RGHVLVSKDGEAFTQK--AVPTQSTLTATTVVG----DNIWAVGHDAVILHSSDKGETWE 105
Query: 298 REKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
+ ++ V F NEK+G G G+ + L
Sbjct: 106 IQNFQPDLQRPFLDVLFFNEKQGIATGAYGLFYRTL 141
>gi|410031498|ref|ZP_11281328.1| putative photosystem II stability/assembly factor-like protein
[Marinilabilia sp. AK2]
Length = 935
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 31/204 (15%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTS 189
G++ G LL T + G W S+ ED N F F G++VG + T
Sbjct: 374 GYICGEDGILLRTTNSGSNWT--SLNPGTSEDLNGLF---FFNNNVGYVVGDNGFIAFTI 428
Query: 190 DAGESWERIPL--SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG 247
D G +WE+I + SS +AF+ P N + I N G ++ + + S
Sbjct: 429 DGGVNWEKINIGNSSIDFRRIAFFDPENGIL---IGNNG-------FVSIFENNEWKSVN 478
Query: 248 TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAA 307
G+ +F ++ ILD ++ A G SG T + G++W R + +
Sbjct: 479 VGVNIDFNDIS-------ILD-----ENSAVIVGQSGNAFITNDKGQSWDRLNLS--FSE 524
Query: 308 NLYSVKFINEKKGFVLGNDGVLLQ 331
N +V+F++++ GF+ G G+++Q
Sbjct: 525 NFNAVEFLDDEVGFIAGEKGLMIQ 548
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 93/209 (44%), Gaps = 34/209 (16%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHT 188
G ++G + T +GG TW +I + + + N + F ++ ++VG + +
Sbjct: 84 GIMVGENGHIFRTSNGGNTWTLSNIGA------DVKLNKVKFLSQQRLYVVGDNGEVYRS 137
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA--DGGLWLLVRGGGLFLSK 246
++ GESW R + + D+ R++ + G+ A +G ++ GG + ++
Sbjct: 138 NNGGESWTRQNIGTN--ADL-------RSLYFVNADTGYVAASNGQVFRTFNGGNNWAAR 188
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
TG Q+RG DV + + +A G G +L+T+N G +W +
Sbjct: 189 NTG----------QTRGLN--DVHFVNGKIGYAVGDGGTILRTSNTGDSWT--SVSSGTE 234
Query: 307 ANLYSVKF--INEKKGFVLGNDGVLLQYL 333
+LY+V F N G V G + LL+ +
Sbjct: 235 RDLYAVSFNRANRNLGVVTGENATLLRTI 263
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 87/216 (40%), Gaps = 31/216 (14%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE-DFNYRFNSISFKGKE 175
L ++F + N G + G TLL T +GG T+ R++ + E D +R N+ +
Sbjct: 237 LYAVSFNRANRNLGVVTGENATLLRTINGGLTFEGRNVNNQENYLDATFRANTNNV---- 292
Query: 176 GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG--WRADGGL 233
+ L+ ++++G SW R R I G +R D
Sbjct: 293 -FACATNGFLISSTNSGASWAL------------------RLSGREIDYTGTEFRTDRIG 333
Query: 234 WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGG 293
+++ G + G + PV +R + + + + G G+LL+TTN G
Sbjct: 334 YIIGENGRFLFTNNGGTSFNDRSRPVSNRFNHLF---FTTNALGYICGEDGILLRTTNSG 390
Query: 294 KTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
W + +L + F N G+V+G++G +
Sbjct: 391 SNWTSLNPG--TSEDLNGLFFFNNNVGYVVGDNGFI 424
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 27/170 (15%)
Query: 165 RFNSISFKGKE-GWIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARR 221
++ + F +E G+I G I+L T D G SW + PL +++ G F N +V
Sbjct: 32 QYTGVVFVNEEVGYISGNQ-IILKTIDGGLSWVEQETPLKTKMWGLDFF----NESVG-- 84
Query: 222 IQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAG 281
++ G +F + G T + + + V + SQ + G
Sbjct: 85 ------------IMVGENGHIFRTSNGGNTWTLSNIGADVK---LNKVKFLSQQRLYVVG 129
Query: 282 GSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+G + ++ NGG++W R+ N A+L S+ F+N G+V ++G + +
Sbjct: 130 DNGEVYRSNNGGESWTRQNIGTN--ADLRSLYFVNADTGYVAASNGQVFR 177
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 116/308 (37%), Gaps = 62/308 (20%)
Query: 58 SSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVL 117
S+ + LN+ +F+SQ + G + +S +W R I + L
Sbjct: 106 SNIGADVKLNKVKFLSQQRLYVV--------GDNGEVYRSNNGGESWTRQNIGTNAD--L 155
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEG 176
+ FV D G++ + + T +GG WA R+ N + F GK G
Sbjct: 156 RSLYFVNADT--GYVAASNGQVFRTFNGGNNWAARNTGQTRG------LNDVHFVNGKIG 207
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
+ VG +L TS+ G+SW + SS D+ + NRA +N+G LL
Sbjct: 208 YAVGDGGTILRTSNTGDSWTSV--SSGTERDL-YAVSFNRAN----RNLGVVTGENATLL 260
Query: 237 --VRGGGLFLSKGTGITEEFEEVPVQ----------SRGFGILDVG-------------- 270
+ GG F + E + + + + GF I
Sbjct: 261 RTINGGLTFEGRNVNNQENYLDATFRANTNNVFACATNGFLISSTNSGASWALRLSGREI 320
Query: 271 ------YRSQDEAWAAGGSGVLLKTTNGGKTW-IREKAADNIAANLYSVKFINEKKGFVL 323
+R+ + G +G L T NGG ++ R + N +L+ F G++
Sbjct: 321 DYTGTEFRTDRIGYIIGENGRFLFTNNGGTSFNDRSRPVSNRFNHLF---FTTNALGYIC 377
Query: 324 GNDGVLLQ 331
G DG+LL+
Sbjct: 378 GEDGILLR 385
>gi|397687565|ref|YP_006524884.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri DSM
10701]
gi|395809121|gb|AFN78526.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri DSM
10701]
Length = 367
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 23/201 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ ++W + +P +L I F D HG+ +G +L T DGG+TW +
Sbjct: 93 SDDGGASWTQAKVPTRQ--LLTAIYFA--DAQHGWAVGHDALVLATTDGGQTWTQQY--- 145
Query: 157 AEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + + F+ E G VG LL T D G++W+ + + +L + + H
Sbjct: 146 -ENREGEVPLLDVWFENAEHGLAVGAYGTLLETHDGGKTWDDV--ADRLENEDGY---HL 199
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+ D GL+++ GG+F S G T E E P Q FG+ +G
Sbjct: 200 NAITAI-------KDSGLFIVGEMGGMFRSADLGQTWEQVESPYQGSLFGV--IGGSEAG 250
Query: 276 EAWAAGGSGVLLKTTNGGKTW 296
A G G L ++T+ G +W
Sbjct: 251 TVVAFGLRGHLFRSTDFGNSW 271
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 84/219 (38%), Gaps = 70/219 (31%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
+LLD+ + L G R +L + DGG +W +P+ + +I F +
Sbjct: 70 LLLDVTHAGERL---VAAGDRGHILYSDDGGASWTQAKVPTRQ------LLTAIYFADAQ 120
Query: 175 EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
GW VG A++L T+D G++W + Q NR
Sbjct: 121 HGWAVGHDALVLATTDGGQTWTQ--------------QYENRE----------------- 149
Query: 235 LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGK 294
EVP +LDV + + + A G G LL+T +GGK
Sbjct: 150 --------------------GEVP-------LLDVWFENAEHGLAVGAYGTLLETHDGGK 182
Query: 295 TW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
TW + ++ + +L ++ I + F++G G + +
Sbjct: 183 TWDDVADRLENEDGYHLNAITAIKDSGLFIVGEMGGMFR 221
>gi|395797362|ref|ZP_10476652.1| hypothetical protein A462_18874 [Pseudomonas sp. Ag1]
gi|395338462|gb|EJF70313.1| hypothetical protein A462_18874 [Pseudomonas sp. Ag1]
Length = 346
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 23/201 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P LL F DD HG+ +G +L T DGG TW +
Sbjct: 79 SDDQGVTWTQAKVPTRQ---LLTAVFFADD-QHGWAVGHDAQILATTDGGVTWTQQFQDL 134
Query: 157 AEEEDFNYRFNSISFK-GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + FK G+ VG L+ T+D G++W+ + S +L + Q H
Sbjct: 135 KREA----PLLDVWFKDASNGFAVGAYGALIETTDGGKTWDDV--SDRLDNED---QYHL 185
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A+ D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 186 NAIAQ-------VKDAGLFIVGEQGSMFRSHDEGQTWEKLEGPYEGSLFGV--IGTAQAQ 236
Query: 276 EAWAAGGSGVLLKTTNGGKTW 296
A G G L ++T+ G TW
Sbjct: 237 TLLAYGLRGNLFRSTDFGSTW 257
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 23/168 (13%)
Query: 168 SISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNM 225
+ GK VG +L++ D G +W ++P L H AV Q +
Sbjct: 59 DVVHAGKRLVAVGDRGHILYSDDQGVTWTQAKVPTRQLLTAVFFADDQHGWAVGHDAQIL 118
Query: 226 GWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
G W T++F+++ ++ +LDV ++ +A G G
Sbjct: 119 ATTDGGVTW----------------TQQFQDLKREAP---LLDVWFKDASNGFAVGAYGA 159
Query: 286 LLKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L++TT+GGKTW + ++ + +L ++ + + F++G G + +
Sbjct: 160 LIETTDGGKTWDDVSDRLDNEDQYHLNAIAQVKDAGLFIVGEQGSMFR 207
>gi|170720764|ref|YP_001748452.1| hypothetical protein PputW619_1578 [Pseudomonas putida W619]
gi|169758767|gb|ACA72083.1| conserved hypothetical protein [Pseudomonas putida W619]
Length = 341
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 24/240 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD G+ +G +L + DGG TW+ +
Sbjct: 70 SDDQGNTWTQARVPTRQ---LLTAVFFVDD-KRGWAVGHDAQILASNDGGATWSKQFEDL 125
Query: 157 AEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNR 216
A E + + G+ VG LL T D G+ W+ + P M H
Sbjct: 126 AREAPL---LDVTFLDAQHGFAVGAYGALLETRDGGQHWQDVAERLDNPDQM-----HLN 177
Query: 217 AVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDE 276
+A+ D GL+++ G +F S +G + P + FG+ +G
Sbjct: 178 GIAQ-------IKDAGLFIVGEQGSMFRSSDSGQSWSKLNGPYEGSLFGL--IGTAQPQT 228
Query: 277 AWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
A G G L ++T+ G +W I KAA N+ L S +++ ++GN G +L+ +
Sbjct: 229 LLAYGLRGNLFRSTDFGDSWQPIELKAARGNLEFGLASATLLDDGSLVLVGNGGSVLRSI 288
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + + W + + + LLD+ F+ D HGF +G LLET+DGG+ W +
Sbjct: 107 QILASNDGGATWSKQFEDLAREAPLLDVTFL--DAQHGFAVGAYGALLETRDGGQHW--Q 162
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
+ + N I+ G +IVG+ + +SD+G+SW ++ P L G +
Sbjct: 163 DVAERLDNPDQMHLNGIAQIKDAGLFIVGEQGSMFRSSDSGQSWSKLNGPYEGSLFGLIG 222
Query: 210 FWQPH 214
QP
Sbjct: 223 TAQPQ 227
>gi|422654722|ref|ZP_16717454.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330967737|gb|EGH67997.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 326
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W++ + + LLD+ F DLN+GF +G LL T DGG+ W +
Sbjct: 96 QILASSDGGKSWDKQFEDLKREAPLLDVWF--KDLNNGFAIGAYGALLNTSDGGQHW--Q 151
Query: 153 SIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
+ + + Y N I+ K +IVG+ + +SD G++WE++ P L G +
Sbjct: 152 DVSDRLDNEDQYHLNGIAQIKDAGLFIVGEAGSMFRSSDEGQTWEKLEGPYQGSLFGVVG 211
Query: 210 FWQP 213
QP
Sbjct: 212 TAQP 215
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L +G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 36 LLLDVAHAGARL---VAVGDHGHILYSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 86
Query: 176 -GWIVGKPAILLHTSDAGESWERI--PLSSQLP-GDMAFWQPHN---------------- 215
GW VG A +L +SD G+SW++ L + P D+ F +N
Sbjct: 87 HGWAVGHDAQILASSDGGKSWDKQFEDLKREAPLLDVWFKDLNNGFAIGAYGALLNTSDG 146
Query: 216 ----RAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
+ V+ R+ N + D GL+++ G +F S G T E E P Q
Sbjct: 147 GQHWQDVSDRLDNEDQYHLNGIAQIKDAGLFIVGEAGSMFRSSDEGQTWEKLEGPYQGSL 206
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ VG A G G L ++++ G TW I A + L S +++
Sbjct: 207 FGV--VGTAQPATLLAYGLRGNLFRSSDFGDTWQPIELNGARGPVEFGLASATLLSDGTL 264
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 265 VLVGNGGSVMR 275
>gi|227015862|gb|ACP17959.1| putative transporter [Pseudomonas nitroreducens]
Length = 368
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 57/230 (24%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-K 174
VLL +A D + +G R +L + D GKTW +P + ++ F
Sbjct: 55 VLLSVARAGDRI---VAVGERGIVLLSDDAGKTWRQAKVP------VSVSLTAVQFVDPS 105
Query: 175 EGWIVGKPAILLHTSDAGESWERIPLSSQLPG--------DMAFWQPHNRAVARRIQNMG 226
GW VG ++LHT D GE+W + QL G D A P+ + R I++
Sbjct: 106 HGWAVGHLGVVLHTEDGGETWVK-----QLDGIAAVEALVDYAKNDPNVQDRERAIKDSE 160
Query: 227 WR-ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
W ADG + P LD+ + + + G G+
Sbjct: 161 WMLADG-----------------------PDKP-------FLDLYFADKSNGFIVGAYGL 190
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKG--FVLGNDGVLLQYL 333
L KT++GGKTW+ + + +NL+ + I+ G ++ G G+LL+ L
Sbjct: 191 LFKTSDGGKTWMPWASHISNPSNLH-LNAISASGGKLYIAGERGLLLRSL 239
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK 172
P LD+ F D ++GF++G L +T DGGKTW P + S N N+IS
Sbjct: 167 PDKPFLDLYFA--DKSNGFIVGAYGLLFKTSDGGKTWMPWA--SHISNPSNLHLNAISAS 222
Query: 173 GKEGWIVGKPAILLHTSDAGESWERI 198
G + +I G+ +LL + D G S+E +
Sbjct: 223 GGKLYIAGERGLLLRSLDGGASFETL 248
>gi|452746583|ref|ZP_21946399.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri NF13]
gi|452009487|gb|EME01704.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri NF13]
Length = 332
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 27/239 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ ++W + +P +L I FV D HG+ +G +L T DGG++WA +
Sbjct: 63 SDDDGASWMQAKVPTRQ--LLTAIDFVDD--KHGWAVGHDALILTTADGGESWAVQ---- 114
Query: 157 AEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E+ + + F+ + G VG LL T D G+SWE I S +L + + H
Sbjct: 115 YEDREREAPLLDVWFEDTQHGIAVGAYGALLETIDGGQSWEDI--SERLDNEDGY---HL 169
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A IQ GL+++ GG+F S G T E E P Q FG+ V
Sbjct: 170 NAIA-HIQGS------GLFVVGELGGMFRSTDLGETWERVESPYQGSFFGV--VSGSEPG 220
Query: 276 EAWAAGGSGVLLKTTNGGKTW----IREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++ + G +W + + + + L + + + V+G+ G +L
Sbjct: 221 VVIAFGLRGHLFRSVDSGDSWEGIELANGNGNMLESGLADGNLLRDGRIVVVGHGGAVL 279
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
+LLDI + L G R +L + D G +W +P+ + +I F K
Sbjct: 40 LLLDITQAGERL---VAAGDRGHILYSDDDGASWMQAKVPTRQ------LLTAIDFVDDK 90
Query: 175 EGWIVGKPAILLHTSDAGESW 195
GW VG A++L T+D GESW
Sbjct: 91 HGWAVGHDALILTTADGGESW 111
>gi|398857071|ref|ZP_10612775.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM79]
gi|398241627|gb|EJN27276.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM79]
Length = 355
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 26/239 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR-SIP 155
S++ + W + +P LL F DD HG+ +G +L ++DGG TW +
Sbjct: 84 SDDQGATWAQAKVPTRQ---LLTAVFFVDD-KHGWAVGHDAQILASEDGGITWTKQFEDL 139
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
+ E + F ++ G+ VG LL T+D G++WE + S +L + F H
Sbjct: 140 TRESPLLDVWFKDVN----SGFAVGAYGALLETTDGGKNWENV--SDRLDNEDQF---HL 190
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A D G++++ G +F S G T E E P + FG+ +G
Sbjct: 191 NAIAA-------VKDSGIFIVGEQGSMFRSADDGQTWEKLEGPYEGSLFGV--IGTAQPA 241
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G L ++T+ G TW + KA + L +++ ++GN G +++
Sbjct: 242 TLLAYGLRGNLYRSTDFGSTWEQVELKATRGTLEFGLSGATLLDDGSIVIVGNGGSVIR 300
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + + + LLD+ F D+N GF +G LLET DGGK W
Sbjct: 121 QILASEDGGITWTKQFEDLTRESPLLDVWF--KDVNSGFAVGAYGALLETTDGGKNWENV 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ F+ N+I+ G +IVG+ + ++D G++WE++ P L G +
Sbjct: 179 SDRLDNEDQFH--LNAIAAVKDSGIFIVGEQGSMFRSADDGQTWEKLEGPYEGSLFGVIG 236
Query: 210 FWQP 213
QP
Sbjct: 237 TAQP 240
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P L H AV Q +
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGATWAQAKVPTRQLLTAVFFVDDKHGWAVGHDAQILA 124
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++FE++ +S +LDV ++ + +A G G L
Sbjct: 125 SEDGGITW----------------TKQFEDLTRESP---LLDVWFKDVNSGFAVGAYGAL 165
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L+TT+GGK W + ++ + +L ++ + + F++G G + +
Sbjct: 166 LETTDGGKNWENVSDRLDNEDQFHLNAIAAVKDSGIFIVGEQGSMFR 212
>gi|330810126|ref|YP_004354588.1| hypothetical protein PSEBR_a3271 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423697777|ref|ZP_17672267.1| BNR/Asp-box repeat domain protein [Pseudomonas fluorescens Q8r1-96]
gi|327378234|gb|AEA69584.1| Conserved hypothetical protein; putative exported protein
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|388004833|gb|EIK66100.1| BNR/Asp-box repeat domain protein [Pseudomonas fluorescens Q8r1-96]
Length = 345
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 20/217 (9%)
Query: 7 LSEPMMLVKPSLSSLF-------APRLNRTNAQAQQPRFISTSRACSLPSSDSSSSSSSS 59
LS P+M V S S + A + + R ++ + SD S +
Sbjct: 29 LSAPVMAVAASTSDVIYSVESAKASKTLMLDVVHAGQRLVAVGDRGHIVYSDDQGKSWTQ 88
Query: 60 SSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLD 119
+ + RQ + TA + G Q S++ S+W + + + LLD
Sbjct: 89 AK----VPTRQLL--TAVFFVDDKHGWAVGHDAQILASDDGGSSWTKQFEDLTREAPLLD 142
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG-WI 178
+ F D ++GF +G LLET DGGK W S E ED + N+I+ G +I
Sbjct: 143 VWF--KDASNGFAVGAYGALLETTDGGKHWEDAS-DRLENED-QFHLNAIAAVKDAGLFI 198
Query: 179 VGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
VG+ + ++D G++WE++ P L G + QP
Sbjct: 199 VGEAGSMFRSADWGQTWEKVEGPYEGSLFGVIGTAQP 235
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 27/159 (16%)
Query: 179 VGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
VG ++++ D G+SW ++P L H AV Q + G W
Sbjct: 70 VGDRGHIVYSDDQGKSWTQAKVPTRQLLTAVFFVDDKHGWAVGHDAQILASDDGGSSW-- 127
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
T++FE++ +R +LDV ++ +A G G LL+TT+GGK W
Sbjct: 128 --------------TKQFEDL---TREAPLLDVWFKDASNGFAVGAYGALLETTDGGKHW 170
Query: 297 IREKAADNIAA----NLYSVKFINEKKGFVLGNDGVLLQ 331
E A+D + +L ++ + + F++G G + +
Sbjct: 171 --EDASDRLENEDQFHLNAIAAVKDAGLFIVGEAGSMFR 207
>gi|398995604|ref|ZP_10698482.1| BNR/Asp-box repeat protein [Pseudomonas sp. GM21]
gi|398129493|gb|EJM18857.1| BNR/Asp-box repeat protein [Pseudomonas sp. GM21]
Length = 358
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 46/209 (22%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G W +P + + ++ F ++GW VG ++LH+SDA
Sbjct: 61 VGQRGHILFSDDAGLHWQQAQVPVSSD------LVAVHFPTSRQGWAVGHDGVVLHSSDA 114
Query: 192 GESWERIPLSSQLPGDMAFW-------QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
G SWER + Q+ + + +P N A+ R+ + D
Sbjct: 115 GASWERQLDARQIGALLLGYYRQKLNARPDNEALMTRVADAQRIND-------------- 160
Query: 245 SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAA 302
G + F LDV ++ + G ++ +T +GG+ W ++
Sbjct: 161 ---EGADQSF------------LDVWFQDDQVGYVVGAFNLIFRTEDGGRHWTPWLDRTD 205
Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+ A NLY+++ I ++ F++G G++L+
Sbjct: 206 NPGALNLYALRPIGDQL-FIVGEQGLVLK 233
>gi|409422950|ref|ZP_11260022.1| hypothetical protein PsHYS_12673 [Pseudomonas sp. HYS]
Length = 351
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 26/239 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P +L + FV D HG+ +G +L + DGG TW+ +
Sbjct: 84 SDDQGKTWTQAKVPTRQ--LLTAVYFVDD--QHGWAVGHDAQILASTDGGATWSKQFEDL 139
Query: 157 AEEEDFNYRFNSISFK-GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
A E + FK + G+ VG LL T+D G++W + +L + F
Sbjct: 140 AREAP----LLDVWFKETQHGFAVGAYGALLETTDGGKTWNEV--GDRLNNEDQF----- 188
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
+ + D GL+++ G +F S G T E E P + FG+ G
Sbjct: 189 -----HLNGIAAVKDAGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGV--TGTAQPR 241
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G L ++T+ G +W I KAA N+ L S +++ ++GN G +L+
Sbjct: 242 TLLAYGLRGNLYRSTDFGDSWQQIELKAARGNLEFGLASATLLDDGSLVLVGNGGSVLR 300
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 32/245 (13%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + + W + + + LLD+ F + HGF +G LLET DGGKTW
Sbjct: 121 QILASTDGGATWSKQFEDLAREAPLLDVWF--KETQHGFAVGAYGALLETTDGGKTWNEV 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
E+ F+ N I+ G +IVG+ + +SD G++WE++ P L G
Sbjct: 179 GDRLNNEDQFH--LNGIAAVKDAGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGVTG 236
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQ-SRG---FG 265
QP R + G R + L + T + ++++ ++ +RG FG
Sbjct: 237 TAQP------RTLLAYGLRGN-------------LYRSTDFGDSWQQIELKAARGNLEFG 277
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
+ G G +L++++ G+++ AD IA L V ++ + ++G
Sbjct: 278 LASATLLDDGSLVLVGNGGSVLRSSDDGQSFSVFNRADRIA--LAGVSGLSGGRLVLVGQ 335
Query: 326 DGVLL 330
GV L
Sbjct: 336 GGVHL 340
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 23/157 (14%)
Query: 179 VGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
VG +L + D G++W ++P L H AV Q + G W
Sbjct: 75 VGDRGHILFSDDQGKTWTQAKVPTRQLLTAVYFVDDQHGWAVGHDAQILASTDGGATW-- 132
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+++FE++ ++ +LDV ++ +A G G LL+TT+GGKTW
Sbjct: 133 --------------SKQFEDLAREAP---LLDVWFKETQHGFAVGAYGALLETTDGGKTW 175
Query: 297 --IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+ ++ + +L + + + F++G G + +
Sbjct: 176 NEVGDRLNNEDQFHLNGIAAVKDAGLFIVGEQGSMFR 212
>gi|429214798|ref|ZP_19205961.1| putative BNR/Asp-box repeat protein [Pseudomonas sp. M1]
gi|428155084|gb|EKX01634.1| putative BNR/Asp-box repeat protein [Pseudomonas sp. M1]
Length = 366
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 33/246 (13%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ + W R + + LLD+ F D NHG +G +LET DGGK+W
Sbjct: 134 QILASEDGGATWTRQFEDLKREAPLLDVWF--QDENHGLAVGAYGAMLETHDGGKSWEDV 191
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ F+ N I+ G +VG+ L + D G +WE++ P L G +
Sbjct: 192 SERLDNEDQFH--LNGIAAVKDSGLLVVGESGSLFRSKDWGATWEKLQGPYEGSLFGTVG 249
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRG---F 264
QP +L+ G G LF S G T + +P+ G F
Sbjct: 250 TAQPGT-------------------VLIYGLRGHLFRSTDFGDTWQQVALPIAGDGTLEF 290
Query: 265 GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
G+ + G SG +L + + G+T+ D +A L V + ++G
Sbjct: 291 GLAEGSLLPDGSIAVVGNSGSVLVSKDDGRTFNIFNRPDRLA--LAGVGAAGDGNLVLVG 348
Query: 325 NDGVLL 330
G+ L
Sbjct: 349 QGGIHL 354
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 38/195 (19%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GKTWA +P+ + + N K+GW VG A +L + D G
Sbjct: 88 VGDRGHILYSDDNGKTWAQAKVPTRQLLTAVFFVND-----KKGWAVGHDAQILASEDGG 142
Query: 193 ESWERI--PLSSQLPGDMAFWQPHNRA---------------------VARRIQN----- 224
+W R L + P ++Q N V+ R+ N
Sbjct: 143 ATWTRQFEDLKREAPLLDVWFQDENHGLAVGAYGAMLETHDGGKSWEDVSERLDNEDQFH 202
Query: 225 ---MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAG 281
+ D GL ++ G LF SK G T E + P + FG VG G
Sbjct: 203 LNGIAAVKDSGLLVVGESGSLFRSKDWGATWEKLQGPYEGSLFGT--VGTAQPGTVLIYG 260
Query: 282 GSGVLLKTTNGGKTW 296
G L ++T+ G TW
Sbjct: 261 LRGHLFRSTDFGDTW 275
>gi|312961315|ref|ZP_07775820.1| BNR/Asp-box repeat protein [Pseudomonas fluorescens WH6]
gi|311284973|gb|EFQ63549.1| BNR/Asp-box repeat protein [Pseudomonas fluorescens WH6]
Length = 331
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + + W + Y + LLD+ F +D HG +G L+ET DGG+TWA
Sbjct: 101 QILASTDGGATWTQQYQDLKREAPLLDVWF--NDTRHGLAVGAYGALIETTDGGQTWADV 158
Query: 153 SIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSDAGESWERI 198
S + ED Y N+I+ K +IVG+ + +SD G++WE++
Sbjct: 159 S-DRLDNED-QYHLNAIAQIKDAGLFIVGEQGSMFRSSDDGQTWEKL 203
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 23/201 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F D+ HG+ +G +L + DGG TW +
Sbjct: 64 SDDQGATWVQAKVPTRQ---LLTAVFFADE-QHGWAVGHDAQILASTDGGATWTQQYQDL 119
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + FN + G VG L+ T+D G++W + S +L + Q H
Sbjct: 120 KREAPLLDVWFNDT----RHGLAVGAYGALIETTDGGQTWADV--SDRLDNED---QYHL 170
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A+ D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 171 NAIAQ-------IKDAGLFIVGEQGSMFRSSDDGQTWEKLEGPYEGSLFGV--IGTAQAR 221
Query: 276 EAWAAGGSGVLLKTTNGGKTW 296
A G G L ++T+ G TW
Sbjct: 222 TLLAYGLRGNLYRSTDFGGTW 242
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 70/167 (41%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P L + H AV Q +
Sbjct: 45 VVHAGKRLVAVGDRGHILYSDDQGATWVQAKVPTRQLLTAVFFADEQHGWAVGHDAQILA 104
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++++++ ++ +LDV + A G G L
Sbjct: 105 STDGGATW----------------TQQYQDLKREAP---LLDVWFNDTRHGLAVGAYGAL 145
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++TT+GG+TW + ++ + +L ++ I + F++G G + +
Sbjct: 146 IETTDGGQTWADVSDRLDNEDQYHLNAIAQIKDAGLFIVGEQGSMFR 192
>gi|419953676|ref|ZP_14469819.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri TS44]
gi|387969365|gb|EIK53647.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri TS44]
Length = 314
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKE 175
LLD+ F DL HG +G L+ET DGG+TW I + + Y N+I+ +G
Sbjct: 108 LLDVWFA--DLRHGIAVGAYGALIETTDGGETW--NDISDRLDNEDGYHLNAITHVEGSG 163
Query: 176 GWIVGKPAILLHTSDAGESWERI 198
+IVG+ + ++D G+SWERI
Sbjct: 164 LFIVGEMGGMFRSTDLGQSWERI 186
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 118/263 (44%), Gaps = 33/263 (12%)
Query: 77 TLSLSISLAAT----TGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFL 132
TL L I+ A T G S++A S+W + +P +L + FV D HG+
Sbjct: 23 TLLLDITQAGTRLVAAGDRGHILYSDDAGSSWTQAKVPTRQ--MLTAVHFV--DAQHGWA 78
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G +L T+DGG +W + E+ + + F + G VG L+ T+D
Sbjct: 79 VGHDALVLATRDGGLSWTTQH----EDREREAPLLDVWFADLRHGIAVGAYGALIETTDG 134
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADG-GLWLLVRGGGLFLSKGTGI 250
GE+W I S +L + + H A+ +G GL+++ GG+F S G
Sbjct: 135 GETWNDI--SDRLDNEDGY---HLNAITH--------VEGSGLFIVGEMGGMFRSTDLGQ 181
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADN---IAA 307
+ E E P + FG+L G RS A G G L ++ + G +W + + +D + +
Sbjct: 182 SWERIESPYEGSLFGVL--GERSG-VVLAFGLRGHLFRSDDFGTSWRQLEVSDEGRPLRS 238
Query: 308 NLYSVKFINEKKGFVLGNDGVLL 330
L + + + ++G+ G +L
Sbjct: 239 GLAGGSALADGRVVIVGHGGAVL 261
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 94 PAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS 153
P + + A + + P +LLDI L G R +L + D G +W
Sbjct: 2 PLLAASDIQARDSIQSPKAATTLLLDITQAGTRL---VAAGDRGHILYSDDAGSSWTQAK 58
Query: 154 IPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESW 195
+P+ + ++ F + GW VG A++L T D G SW
Sbjct: 59 VPTRQ------MLTAVHFVDAQHGWAVGHDALVLATRDGGLSW 95
>gi|389683776|ref|ZP_10175107.1| BNR/Asp-box repeat domain protein [Pseudomonas chlororaphis O6]
gi|388552115|gb|EIM15377.1| BNR/Asp-box repeat domain protein [Pseudomonas chlororaphis O6]
Length = 344
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + + + LLD+ F D+++GF +G LL T DGGKTW
Sbjct: 115 QVLASEDGGLTWTKQFEDLKREAPLLDVWF--QDISNGFAVGAYGALLATTDGGKTWEDA 172
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N+I+ G +IVG+ + ++D G++WER+ P G +
Sbjct: 173 S-DRLDNED-QYHLNAIAAVKDSGLFIVGEQGSMFRSADWGQTWERLEGPYEGSFFGVIG 230
Query: 210 FWQP 213
QP
Sbjct: 231 TAQP 234
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 26/239 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P +L + FV D HG+ +G +L ++DGG TW +
Sbjct: 78 SDDQGQTWTQAKVPTRQ--LLTAVYFV--DAKHGWAVGHDAQVLASEDGGLTWTKQFEDL 133
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + F IS G+ VG LL T+D G++WE S +L + Q H
Sbjct: 134 KREAPLLDVWFQDIS----NGFAVGAYGALLATTDGGKTWE--DASDRLDNED---QYHL 184
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 185 NAIAA-------VKDSGLFIVGEQGSMFRSADWGQTWERLEGPYEGSFFGV--IGTAQPA 235
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G L ++T+ G TW + KAA ++ L +++ ++GN G +++
Sbjct: 236 TLLAYGLRGNLYRSTDFGSTWEQVELKAARGSLEFGLSGATLLDDGSLVIVGNGGSVVR 294
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 29/160 (18%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WL 235
VG +L++ D G++W ++P L H AV Q + DGGL W
Sbjct: 69 VGDRGHILYSDDQGQTWTQAKVPTRQLLTAVYFVDAKHGWAVGHDAQVLA-SEDGGLTW- 126
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
T++FE++ ++ +LDV ++ +A G G LL TT+GGKT
Sbjct: 127 ---------------TKQFEDLKREAP---LLDVWFQDISNGFAVGAYGALLATTDGGKT 168
Query: 296 WIREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
W E A+D + +L ++ + + F++G G + +
Sbjct: 169 W--EDASDRLDNEDQYHLNAIAAVKDSGLFIVGEQGSMFR 206
>gi|424066617|ref|ZP_17804081.1| BNR repeat protein [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|408002216|gb|EKG42479.1| BNR repeat protein [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 354
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 41/218 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
VL+DIA + L +G + ++ + D GK W S+P + S+SF
Sbjct: 44 VLIDIARAGERL---VAVGEQGVIVLSDDDGKHWRQASVP------VSVSLTSVSFPSAL 94
Query: 175 EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
+GW VG +LHT D GE+W + QL G++A A+R+ +
Sbjct: 95 QGWAVGHAGSILHTVDGGENW-----TLQLDGNVA---------AQRVLDA--------- 131
Query: 235 LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGK 294
V G + + + F V L V + + + A G G+++ T +GG+
Sbjct: 132 --VVGNAHASERQLKVAQRF---VVDGADKPFLSVHFSNDRQGTAVGAFGLIMHTDDGGQ 186
Query: 295 TWIR-EKAADNIAAN-LYSVKFINEKKGFVLGNDGVLL 330
TW + DN A N LY+V E+ +V G GVL
Sbjct: 187 TWQSWVERLDNPAGNHLYAVVSRGERI-YVTGEQGVLF 223
>gi|392421614|ref|YP_006458218.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri CCUG
29243]
gi|390983802|gb|AFM33795.1| BNR/Asp-box repeat-containing protein [Pseudomonas stutzeri CCUG
29243]
Length = 332
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 27/239 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ S+W + +P +L I FV D HG+ +G +L T DGG++W +
Sbjct: 63 SDDGGSSWMQAKVPTRQ--LLTAIDFVDD--KHGWAVGHDALILATADGGESWTAQY--- 115
Query: 157 AEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E+ + + F+ + G VG LL T D G+SWE I S +L + + H
Sbjct: 116 -EDREREAPLLDVWFEDTQHGIAVGAYGALLETIDGGQSWEDI--SERLDNEDGY---HL 169
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+ IQ G L+++ GG+F S G T E E P Q FG+ VG
Sbjct: 170 NAITH-IQGSG------LFVVGELGGMFRSADMGETWERVESPYQGSFFGV--VGGSEPG 220
Query: 276 EAWAAGGSGVLLKTTNGGKTW----IREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++ + G +W + + + + L + + + V+G+ G +L
Sbjct: 221 VVVAFGLRGHLFRSIDFGDSWEGIELVNGNGNVLESGLADGNLLRDGRIVVVGHGGAVL 279
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
+LLDI + L G R +L + DGG +W +P+ + +I F K
Sbjct: 40 LLLDITQAGERL---VAAGDRGHILYSDDGGSSWMQAKVPTRQ------LLTAIDFVDDK 90
Query: 175 EGWIVGKPAILLHTSDAGESW 195
GW VG A++L T+D GESW
Sbjct: 91 HGWAVGHDALILATADGGESW 111
>gi|358636983|dbj|BAL24280.1| glycosyl hydrolase [Azoarcus sp. KH32C]
Length = 351
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 58/237 (24%)
Query: 111 VDPGVVLLDIAFVPDDLNHGFLL-------------GTRQTLLETKDGGKTWAPRSIPSA 157
VDP LD VP L G L+ G R +L + DGGKTWA +P
Sbjct: 29 VDP----LDAPSVPSALAAGSLITGLSHAGERVVAVGQRGHVLVSGDGGKTWAQAQVPVK 84
Query: 158 EEEDFNYRFNSISFKGK-EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNR 216
+ ++SF GW VG ++L TSD G +W R Q R
Sbjct: 85 SD------LVAVSFPTPLRGWAVGHDGVVLATSDGGANWVR--------------QFDGR 124
Query: 217 AVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDE 276
+ AR + + + + + +E E LDV + ++
Sbjct: 125 SAARAMADH-----------------YANASAELAQEAERFVADGPDKPFLDVWFENETT 167
Query: 277 AWAAGGSGVLLKTTNGGKTWIR--EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+ G ++ +T +GGKTW+ ++ + +L++V+ K F++G G++L+
Sbjct: 168 GYIVGAFNLIFRTEDGGKTWVPWFDRTENPRRLHLHAVRGFG-KDVFIVGEQGLVLK 223
>gi|410861775|ref|YP_006977009.1| BNR repeat-containing protein [Alteromonas macleodii AltDE1]
gi|410819037|gb|AFV85654.1| BNR repeat-containing protein [Alteromonas macleodii AltDE1]
Length = 348
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 30/257 (11%)
Query: 79 SLSISLAATTGL-YEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+++ +A T + Y A +EEA A P+ VLLDI D + ++G R
Sbjct: 4 TIAACIATTFAVNYSTAALAEEAFMA------PLVEQSVLLDI----DADSFVVIVGERG 53
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWE- 196
+L ++DG K + +++P+ + + G+ W VG A++LH+SD GE+WE
Sbjct: 54 HVLVSEDG-KAFNQKAVPTQS------TLTATTVVGENIWAVGHDAVILHSSDKGETWEI 106
Query: 197 -RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA-DGG-LWLLVRGGGLFLSKGTGITEE 253
Q P F+ + +A + +R DGG W R L EE
Sbjct: 107 QNYQPDLQRPFLDVFFFDDKQGIATGAYGLFYRTLDGGKTWAAERHASLLDPMDQEYLEE 166
Query: 254 F---EEVPVQSRGFGILDVGYRSQ---DEAWAAGGSGVLLKTTNGGKTWIREKAADNIAA 307
+E Q IL R D + AG +G+L K+T+ G++W E+ +
Sbjct: 167 VRKEDEAFYQQELESILPHLNRVTLDGDTLYLAGEAGLLAKSTDMGQSW--ERYYVDYTG 224
Query: 308 NLYSVKFINEKKGFVLG 324
+ + +K ++E +G
Sbjct: 225 SFFDIKPLDENTVLAVG 241
>gi|409393998|ref|ZP_11245249.1| BNR/Asp-box repeat-containing protein [Pseudomonas sp. Chol1]
gi|409396166|ref|ZP_11247187.1| BNR/Asp-box repeat-containing protein [Pseudomonas sp. Chol1]
gi|409119419|gb|EKM95803.1| BNR/Asp-box repeat-containing protein [Pseudomonas sp. Chol1]
gi|409121425|gb|EKM97547.1| BNR/Asp-box repeat-containing protein [Pseudomonas sp. Chol1]
Length = 313
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS-FKGKE 175
LLD+ F DL HG +G L+ET DGG TW+ I + + Y N+IS +G
Sbjct: 108 LLDVWFA--DLRHGIAVGAYGALIETTDGGVTWS--DISDRLDNEDGYHLNAISHIEGSG 163
Query: 176 GWIVGKPAILLHTSDAGESWERI 198
+IVG+ + ++D G+SWER+
Sbjct: 164 LFIVGEMGSMFRSADLGQSWERV 186
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 28/233 (12%)
Query: 77 TLSLSISLAAT----TGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFL 132
TL L I+ A T G S++A S+W + +P +L I FV D HG+
Sbjct: 23 TLLLDITQAGTRLVAAGDRGHILYSDDAGSSWTQARVPTRQ--MLTAIHFV--DAQHGWA 78
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G +L T+DGG TW + E+ + + F + G VG L+ T+D
Sbjct: 79 VGHDALVLVTRDGGLTWTAQH----EDREREAPLLDVWFADLRHGIAVGAYGALIETTDG 134
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G +W I S +L + + H A++ I+ GL+++ G +F S G +
Sbjct: 135 GVTWSDI--SDRLDNEDGY---HLNAIS-HIEG------SGLFIVGEMGSMFRSADLGQS 182
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADN 304
E E P + FG+L G R A G G L ++ + G +W + + D
Sbjct: 183 WERVEAPYEGSLFGVL--GERP-GVVLAFGLRGHLFRSDDFGTSWKQIEVNDE 232
>gi|149374493|ref|ZP_01892267.1| hypothetical protein MDG893_10611 [Marinobacter algicola DG893]
gi|149361196|gb|EDM49646.1| hypothetical protein MDG893_10611 [Marinobacter algicola DG893]
Length = 364
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDAG 192
G R ++ + DGG+TW +P + + F ++ GW VG ++LH+ DAG
Sbjct: 44 GVRGHIIFSDDGGETWVQGEVP------VSVTLTGVDFGTEQHGWAVGHSGVVLHSDDAG 97
Query: 193 ESWERIPLSSQLPGDMAFW--QPHNRAVARRIQNMGWRADGGL-WLLVRGGGLFLSKGTG 249
E+W+ + L+ ++A Q + ++++ L W L G L+ S
Sbjct: 98 ENWD-LQLTGVRAAELAIESRQEQIDDMEQKLEEAPEEEKDELDWAL---GDLYFSL-EN 152
Query: 250 ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ + E PV LDV + + + G G+ L+TT+GGKTW
Sbjct: 153 LQADLEIGPVNP----FLDVWFENDKHGFVVGAYGMFLRTTDGGKTW 195
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 82/192 (42%), Gaps = 34/192 (17%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKT---WAPRSIPSAEEEDFNYRF 166
PV+P LD+ F D HGF++G L T DGGKT WAP+ E ++
Sbjct: 161 PVNP---FLDVWFEND--KHGFVVGAYGMFLRTTDGGKTWKDWAPKL-----ENPSSFHL 210
Query: 167 NSIS-FKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNM 225
NSI G IVG+ + + D GESWE+ + P + + + I
Sbjct: 211 NSIGRITGGGLVIVGEAGQIFVSVDGGESWEK----RESPYEGSLFGAIGTGNVNEILAF 266
Query: 226 GWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD-EAWAAGGSG 284
G R G +F S G ++ VP +S L+ G S+D G G
Sbjct: 267 GLR-----------GNIFFSSDLG--RSWKVVPSESD--ATLNDGTVSEDGRITLVGNGG 311
Query: 285 VLLKTTNGGKTW 296
+L +TNGG T+
Sbjct: 312 AVLMSTNGGDTF 323
>gi|398989800|ref|ZP_10693029.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM24]
gi|399015746|ref|ZP_10718007.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM16]
gi|398107787|gb|EJL97779.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM16]
gi|398146594|gb|EJM35331.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM24]
Length = 347
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 103/240 (42%), Gaps = 30/240 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P +L + FV D HG+ +G +L + DGG TW +
Sbjct: 76 SDDQGKTWTQAKVPTRQ--LLTAVYFVDD--KHGWAVGHDAQILASADGGLTW------T 125
Query: 157 AEEEDFNYR--FNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + FK G VG LL T+D G++WE + S +L + F
Sbjct: 126 KQFEDLKRESPLLDVWFKDVNSGLAVGAYGALLETTDGGKNWEDV--SDRLDNEDQF--- 180
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H A+A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 181 HLNAIAA-------VKDAGLFIVGESGSMFRSADDGQTWEKLEGPYEGSLFGV--IGTAQ 231
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++T+ G TW + KAA + L + + ++GN G ++
Sbjct: 232 PQTLLAYGLRGNLYRSTDFGSTWEQVELKAARGALEFGLSGATLLEDGSIVIVGNGGSVI 291
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WL 235
VG +L++ D G++W ++P L H AV Q + ADGGL W
Sbjct: 67 VGDRGHILYSDDQGKTWTQAKVPTRQLLTAVYFVDDKHGWAVGHDAQILA-SADGGLTW- 124
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
T++FE++ +S +LDV ++ + A G G LL+TT+GGK
Sbjct: 125 ---------------TKQFEDLKRESP---LLDVWFKDVNSGLAVGAYGALLETTDGGKN 166
Query: 296 W--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W + ++ + +L ++ + + F++G G + +
Sbjct: 167 WEDVSDRLDNEDQFHLNAIAAVKDAGLFIVGESGSMFR 204
>gi|148263290|ref|YP_001229996.1| metallophosphoesterase [Geobacter uraniireducens Rf4]
gi|146396790|gb|ABQ25423.1| metallophosphoesterase [Geobacter uraniireducens Rf4]
Length = 759
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 34/177 (19%)
Query: 171 FKGKEGWIVG----KPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN----RAVARRI 222
+ GW +G K A++LHT + G++WE + GD + W+ HN AV +R
Sbjct: 429 YMSNAGWAIGNDPDKTAVILHTDNGGKTWE-------VQGDGSLWKGHNANDISAVDKR- 480
Query: 223 QNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVP--VQSRGFGILDVGYRSQDEAWAA 280
W A GG G + +K G T + + +P +Q GI VG + EAWA
Sbjct: 481 --TAWAALGGN-DTGEEGMILHTKDGGKTWKVQALPQVIQDGVKGIKGVGRK---EAWAV 534
Query: 281 GGSGVLLKTTNGGKTW---------IRE-KAADNIAANLYSVKFINEKKGFVLGNDG 327
G G ++ T NGGK W I++ D + +++ F N + G + DG
Sbjct: 535 GLHGPVMHTNNGGKRWEIVPTPGITIKQVNRMDVLGKDIWIADFGNGENGMIHSPDG 591
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 30/171 (17%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG---KEGWIVGKPAILLHTSD 190
G +L TKDGGKTW +++P ++ KG KE W VG ++HT++
Sbjct: 492 GEEGMILHTKDGGKTWKVQALPQVIQDGVK------GIKGVGRKEAWAVGLHGPVMHTNN 545
Query: 191 AGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG---WRADGGLWLLVRG-GGLFLSK 246
G+ WE +P PG + Q R+ +G W AD G G G+ S
Sbjct: 546 GGKRWEIVP----TPG-ITIKQ------VNRMDVLGKDIWIADFG-----NGENGMIHSP 589
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-SGVLLKTTNGGKTW 296
G T E +P RG G + ++ AW + G L +T +GG TW
Sbjct: 590 DGGRTWRQEYLPGVDRGHGPMTASIVNKKVAWTSVNLQGELYRTMDGGLTW 640
>gi|154251817|ref|YP_001412641.1| BNR/Asp-box repeat-containing protein [Parvibaculum lavamentivorans
DS-1]
gi|154155767|gb|ABS62984.1| BNR/Asp-box repeat protein [Parvibaculum lavamentivorans DS-1]
Length = 359
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 11/110 (10%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ VY + + + + F +D N GF LG ++ET DGG+TW R++ +D
Sbjct: 133 WDLVYNDTESEMAFMAVYF--EDENRGFALGAFSFIVETNDGGETWEERTLGEGLLDD-- 188
Query: 164 YRFNSISFKGKEG--WIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFW 211
Y N + F K+G +I + ++ H++D G ++ RI +Q G +FW
Sbjct: 189 YHLNKL-FADKDGDLFIAAEFGVVYHSTDQGRTFNRI--QTQYEG--SFW 233
>gi|404448499|ref|ZP_11013492.1| putative photosystem II stability/assembly factor-like protein
[Indibacter alkaliphilus LW1]
gi|403766120|gb|EJZ26995.1| putative photosystem II stability/assembly factor-like protein
[Indibacter alkaliphilus LW1]
Length = 935
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 39/208 (18%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTS 189
G++ G +L T + G W + ++ + + + FN+ G+ VG L T
Sbjct: 374 GYIAGDNGNILRTTNSGGNWTSLNPGTSNQINGLFFFNN-----NLGYAVGNGGFLSKTE 428
Query: 190 DAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTG 249
+AG +WE I + G+ F + R++A Q G +V G G F++
Sbjct: 429 NAGVNWESINI-----GNSNF---NFRSIAFFDQEAG---------IVSGSGGFVA---- 467
Query: 250 ITE--EFEEVPVQSR----GFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAAD 303
I E E+ +P + G ILD +D A A G G ++KT + G +W +
Sbjct: 468 ILENGEWRRIPSGTNQNLNGLAILD-----EDAAIAIGNDGTIIKTEDRGVSWSLINTSY 522
Query: 304 NIAANLYSVKFINEKKGFVLGNDGVLLQ 331
N NL SV+F++E GF+ G G+++Q
Sbjct: 523 N--QNLNSVEFLDESVGFIAGERGLIIQ 548
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 29/203 (14%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHT 188
G++ G Q +L+T DGG +W + P+ R I F + G +VG+ + T
Sbjct: 44 GYISG-NQIILKTIDGGLSWVEQEAPTKN------RMLGIDFTSETLGLMVGEGGQVYRT 96
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT 248
SD G +W+ + + + + ++RA +++ G + S
Sbjct: 97 SDGGSNWQLVNIGTSANLRKVKFLNNSRA----------------YIIGDNGETYRSTNG 140
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAAN 308
G + + + + G+ + + D + A +G +++T NGG W A +
Sbjct: 141 GQSWARQNIGTNADLRGLY---FANADTGYVAAANGQVIRTFNGGNNWSSTNTGQ--AQS 195
Query: 309 LYSVKFINEKKGFVLGNDGVLLQ 331
L + F + K GF +GN G +L+
Sbjct: 196 LNDIYFTDGKTGFAVGNSGTILK 218
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 31/236 (13%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
K+ + + WER+ + L+ +AF + N G + G TL+ T +GG T+ +I
Sbjct: 218 KTSNSGNNWERINSGTERN--LIAVAFNRTNTNLGVVTGEGATLMRTVNGGLTFDGININ 275
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
+AE NY S + VG ++ ++++G+SW S +L G +
Sbjct: 276 NAE----NYVDASFRTTANIVFAVGSNGFVISSTNSGQSW-----SLRLSGR----EIDY 322
Query: 216 RAVARRIQNMGWRA--DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
R +G+ +G ++ GG + + ++ F + + FG
Sbjct: 323 TGTQFRTATLGYIIGPNGRVFSTNNGGNTLVDRSRPLSITFNGLFFTTNAFG-------- 374
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ AG +G +L+TTN G W + N + F N G+ +GN G L
Sbjct: 375 ----YIAGDNGNILRTTNSGGNWTSLNPGTSNQIN--GLFFFNNNLGYAVGNGGFL 424
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 101/252 (40%), Gaps = 35/252 (13%)
Query: 80 LSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTL 139
L+ S A G + +S +W R I + + L A + + G++ +
Sbjct: 120 LNNSRAYIIGDNGETYRSTNGGQSWARQNIGTNADLRGLYFA----NADTGYVAAANGQV 175
Query: 140 LETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERI 198
+ T +GG W+ + A+ N I F GK G+ VG +L TS++G +WERI
Sbjct: 176 IRTFNGGNNWSSTNTGQAQS------LNDIYFTDGKTGFAVGNSGTILKTSNSGNNWERI 229
Query: 199 PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL--VRGGGLFLSKGTGITEEFEE 256
++ A R N+G G L+ V GG F E +
Sbjct: 230 NSGTER-------NLIAVAFNRTNTNLGVVTGEGATLMRTVNGGLTFDGININNAENY-- 280
Query: 257 VPVQSRGFGILDVGYRSQ-DEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI 315
+D +R+ + +A G +G ++ +TN G++W + I + +F
Sbjct: 281 ----------VDASFRTTANIVFAVGSNGFVISSTNSGQSWSLRLSGREI--DYTGTQFR 328
Query: 316 NEKKGFVLGNDG 327
G+++G +G
Sbjct: 329 TATLGYIIGPNG 340
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W R IP L +A + +D +G T+++T+D G +W S +N
Sbjct: 474 WRR--IPSGTNQNLNGLAILDED--AAIAIGNDGTIIKTEDRGVSW------SLINTSYN 523
Query: 164 YRFNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSS 202
NS+ F + G+I G+ +++ T D G +WER+ S+
Sbjct: 524 QNLNSVEFLDESVGFIAGERGLIIQTKDGGITWERLTTST 563
>gi|94501091|ref|ZP_01307615.1| hypothetical protein RED65_05529 [Oceanobacter sp. RED65]
gi|94426838|gb|EAT11822.1| hypothetical protein RED65_05529 [Oceanobacter sp. RED65]
Length = 381
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 52/238 (21%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
+LLDI + L +G R ++ + D G TW +P ++ F
Sbjct: 34 LLLDIHLAGERL---VAVGERGHIIYSDDNGYTWKQAQVPVIT------TLTAVYFVDNN 84
Query: 175 EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAV---------------- 218
GW VG A++LH++DAG++W S Q G +A + + +A
Sbjct: 85 TGWAVGHDAVVLHSNDAGQTW-----SKQFDGFVANQKVYEQAKETKEALQDELNKANVM 139
Query: 219 --ARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDE 276
RI+++ R + W + + ++ +S +LDV +++Q+E
Sbjct: 140 GNMERIEDVEERLERATW--------------AMEDALYDLESESTK-PLLDVWFKNQNE 184
Query: 277 AWAAGGSGVLLKTTNGGKTWIREKAADNIAANLY---SVKFINEKKGFVLGNDGVLLQ 331
+ G G++ KT +GGKTW R+ + + N + ++ +++ + + G G+LL+
Sbjct: 185 GFIIGAYGMVFKTQDGGKTW-RDWSTNMENPNRFHYNAIVSVDDNRLMIAGEAGMLLR 241
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI-SFKGKE 175
LLD+ F + N GF++G + +T+DGGKTW R + E + +N+I S
Sbjct: 174 LLDVWF--KNQNEGFIIGAYGMVFKTQDGGKTW--RDWSTNMENPNRFHYNAIVSVDDNR 229
Query: 176 GWIVGKPAILLHTSDAGESWER 197
I G+ +LL + + G+++E+
Sbjct: 230 LMIAGEAGMLLRSENGGQTFEQ 251
>gi|407717454|ref|YP_006838734.1| glycosyl hydrolase family protein [Cycloclasticus sp. P1]
gi|407257790|gb|AFT68231.1| Glycosyl hydrolase, BNR repeat protein [Cycloclasticus sp. P1]
Length = 322
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 20/164 (12%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
+W+++ PVD V L I+F G+++G T+L+T DGG+TW + EEE F
Sbjct: 65 SWKQIKSPVD--VTLTGISFSSK--TTGWIVGHESTILQTTDGGETWVIKRYK-PEEERF 119
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRI 222
N +S ++G+++G L T DAGE+W+ LS + ++Q H A+ +
Sbjct: 120 YMSVNFVS--PQQGYVLGTDGELWITEDAGETWKLTLLSVE-----EWYQNHLFAIEQ-- 170
Query: 223 QNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGI 266
D L + R GG+F SK + P + FG+
Sbjct: 171 -----ITDTSLVVSER-GGIFYSKDKFSNWQVVPSPYEGSFFGV 208
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
+P+ + LD+ D + F +G R +L + D GK+W P +
Sbjct: 29 MPLSTKAIFLDLDVNEDKV---FAVGERGIILSSTDSGKSWKQIKSP------VDVTLTG 79
Query: 169 ISFKGK-EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
ISF K GWIVG + +L T+D GE+W + P + F+ N ++ +G
Sbjct: 80 ISFSSKTTGWIVGHESTILQTTDGGETW---VIKRYKPEEERFYMSVNFVSPQQGYVLG- 135
Query: 228 RADGGLWL 235
DG LW+
Sbjct: 136 -TDGELWI 142
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
+ + S+ W G +L+TT+GG+TW+ ++ SV F++ ++G+VLG DG
Sbjct: 80 ISFSSKTTGWIVGHESTILQTTDGGETWVIKRYKPEEERFYMSVNFVSPQQGYVLGTDGE 139
Query: 329 L 329
L
Sbjct: 140 L 140
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Query: 242 LFLSKGTGITEEFE----EVPVQSRG-FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ L G+ + E E+P+ ++ F LDV ++D+ +A G G++L +T+ GK+W
Sbjct: 10 MLLMSGSALAETLARPALEMPLSTKAIFLDLDV---NEDKVFAVGERGIILSSTDSGKSW 66
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+ K+ + L + F ++ G+++G++ +LQ
Sbjct: 67 KQIKSP--VDVTLTGISFSSKTTGWIVGHESTILQ 99
>gi|409427349|ref|ZP_11261859.1| hypothetical protein PsHYS_21905 [Pseudomonas sp. HYS]
Length = 954
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 45/219 (20%)
Query: 123 VPDDLNHGFLLGTRQTLLETKDGGKTWAPRS--IPSAEEEDFNYRFNSISF--KGKEGWI 178
+P D H + +G +++ + D GKTW ++ +P + +I+F GK GW
Sbjct: 1 MPTDCKHAWAVGDFGSIVTSADCGKTWKVKASALPGS--------LFAITFLADGKRGWA 52
Query: 179 VGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
G +LL T+DAGE W P + + ++ + +G W+
Sbjct: 53 AGYAGVLLRTTDAGE----------------HWLPTVTGIHSTVTSIMFLENGHGWMATE 96
Query: 239 GGGLFLSKGTGITEEFEEVPVQSRGFGILDV---GYRSQDEAWAAGGSGVLLKTTNGGKT 295
G L S G + E Q G + G R + + G G L T +GG T
Sbjct: 97 DGELLSSSDLGRSWRLMEPQPQLPGLRCVHFQADGLRGR----TSNGEGASLSTADGGLT 152
Query: 296 WIREKAADNIAANLYSVKFINE--------KKGFVLGND 326
W + A + A+L+++ F + K G ++ ND
Sbjct: 153 W--KNVARDKPADLHTITFSPDGLKAPPKAKDGTMVSND 189
>gi|426409765|ref|YP_007029864.1| BNR/Asp-box repeat-containing protein [Pseudomonas sp. UW4]
gi|426267982|gb|AFY20059.1| BNR/Asp-box repeat-containing protein [Pseudomonas sp. UW4]
Length = 350
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 27/203 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L ++DGG TW +
Sbjct: 84 SDDQGATWTQAKVPTRA---LLTSVFFVDD-KHGWAVGHDAQILASEDGGATW------T 133
Query: 157 AEEEDFNYR--FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED N + FK + G+ VG L+ T+D G+ WE S +L + Q
Sbjct: 134 KQFEDLNRESPLLDVWFKDVDSGFAVGAYGSLMETTDGGKHWE--DASDRLDNED---QY 188
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H A+A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 189 HLNAIAA-------VKDAGLFIVGEQGSMFRSADWGQTWEKLEGPYEGSLFGV--IGTAQ 239
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW 296
+ A G G L ++T+ G TW
Sbjct: 240 ANTLLAYGLRGNLYRSTDFGSTW 262
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ + W + + ++ LLD+ F D++ GF +G +L+ET DGGK W
Sbjct: 121 QILASEDGGATWTKQFEDLNRESPLLDVWF--KDVDSGFAVGAYGSLMETTDGGKHWEDA 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI 198
S + ED Y N+I+ G +IVG+ + ++D G++WE++
Sbjct: 179 S-DRLDNED-QYHLNAIAAVKDAGLFIVGEQGSMFRSADWGQTWEKL 223
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P + L H AV Q +
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGATWTQAKVPTRALLTSVFFVDDKHGWAVGHDAQILA 124
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++FE++ +S +LDV ++ D +A G G L
Sbjct: 125 SEDGGATW----------------TKQFEDLNRESP---LLDVWFKDVDSGFAVGAYGSL 165
Query: 287 LKTTNGGKTWIREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
++TT+GGK W E A+D + +L ++ + + F++G G + +
Sbjct: 166 METTDGGKHW--EDASDRLDNEDQYHLNAIAAVKDAGLFIVGEQGSMFR 212
>gi|398958912|ref|ZP_10677831.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM33]
gi|398145915|gb|EJM34688.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM33]
Length = 350
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 27/203 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L ++DGG TW +
Sbjct: 84 SDDQGATWTQAKVPTRA---LLTSVFFVDD-KHGWAVGHDAQILASEDGGATW------T 133
Query: 157 AEEEDFNYR--FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED N + FK + G+ VG L+ T+D G+ WE S +L + Q
Sbjct: 134 KQFEDLNRESPLLDVWFKDVDSGFAVGAYGSLMETTDGGKHWE--DASDRLDNED---QY 188
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H A+A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 189 HLNAIAA-------VKDAGLFIVGEQGSMFRSADWGQTWEKLEGPYEGSLFGV--IGTAQ 239
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW 296
+ A G G L ++T+ G TW
Sbjct: 240 ANTLLAYGLRGNLYRSTDFGSTW 262
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ + W + + ++ LLD+ F D++ GF +G +L+ET DGGK W
Sbjct: 121 QILASEDGGATWTKQFEDLNRESPLLDVWF--KDVDSGFAVGAYGSLMETTDGGKHWEDA 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI 198
S + ED Y N+I+ G +IVG+ + ++D G++WE++
Sbjct: 179 S-DRLDNED-QYHLNAIAAVKDAGLFIVGEQGSMFRSADWGQTWEKL 223
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P + L H AV Q +
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGATWTQAKVPTRALLTSVFFVDDKHGWAVGHDAQILA 124
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++FE++ +S +LDV ++ D +A G G L
Sbjct: 125 SEDGGATW----------------TKQFEDLNRESP---LLDVWFKDVDSGFAVGAYGSL 165
Query: 287 LKTTNGGKTWIREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
++TT+GGK W E A+D + +L ++ + + F++G G + +
Sbjct: 166 METTDGGKHW--EDASDRLDNEDQYHLNAIAAVKDAGLFIVGEQGSMFR 212
>gi|398855225|ref|ZP_10611723.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM80]
gi|398232316|gb|EJN18287.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM80]
Length = 347
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D+N GF +G LLET DGGK W S E+ F+ N+I+ G
Sbjct: 137 LLDVWF--KDVNSGFAVGAYGALLETTDGGKNWQDVSDRLDNEDQFH--LNAIAAVKDAG 192
Query: 177 -WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPH 214
+IVG+ + ++D G++WE++ P L G + QP
Sbjct: 193 LFIVGESGSMFRSADDGQTWEKLEGPYEGSLFGVIGTAQPQ 233
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 29/211 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P +L + FV D HG+ +G +L + DGG TW +
Sbjct: 76 SDDQGKTWTQAKVPSRQ--LLTAVYFVDD--KHGWAVGHDAQILASADGGLTW------T 125
Query: 157 AEEEDFNYR--FNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + FK G+ VG LL T+D G++W+ + S +L + F
Sbjct: 126 KQFEDLKRESPLLDVWFKDVNSGFAVGAYGALLETTDGGKNWQDV--SDRLDNEDQF--- 180
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H A+A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 181 HLNAIAA-------VKDAGLFIVGESGSMFRSADDGQTWEKLEGPYEGSLFGV--IGTAQ 231
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW--IREKAA 302
A G G L ++T+ G +W + KAA
Sbjct: 232 PQTLLAYGLRGNLYRSTDFGSSWEQVELKAA 262
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 25/158 (15%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WL 235
VG +L++ D G++W ++P L H AV Q + ADGGL W
Sbjct: 67 VGDRGHILYSDDQGKTWTQAKVPSRQLLTAVYFVDDKHGWAVGHDAQILA-SADGGLTW- 124
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
T++FE++ +S +LDV ++ + +A G G LL+TT+GGK
Sbjct: 125 ---------------TKQFEDLKRESP---LLDVWFKDVNSGFAVGAYGALLETTDGGKN 166
Query: 296 W--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W + ++ + +L ++ + + F++G G + +
Sbjct: 167 WQDVSDRLDNEDQFHLNAIAAVKDAGLFIVGESGSMFR 204
>gi|407683871|ref|YP_006799045.1| BNR repeat-containing protein [Alteromonas macleodii str. 'English
Channel 673']
gi|407245482|gb|AFT74668.1| BNR repeat-containing protein [Alteromonas macleodii str. 'English
Channel 673']
Length = 348
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 34/259 (13%)
Query: 79 SLSISLAATTGL-YEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+++ +AAT + Y A +EEA A P+ VLLDI D ++G R
Sbjct: 4 TIAACIAATFAVNYSTTAIAEEAFMA------PLVEQSVLLDI----DADTFVVIVGERG 53
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
+L ++DG + + +++P+ + + G W VG A++LH+SD GE+WE
Sbjct: 54 HVLVSEDG-EAFTQKAVPTQS------TLTATTVVGDNIWAVGHDAVILHSSDKGETWEI 106
Query: 198 IPLSSQLPG---DMAFWQPHNRAVARRIQNMGWRA-DGG-LWLLVRGGGL-------FLS 245
L D+ F+ + +A + +R DGG W R L +L
Sbjct: 107 QNFQPDLQRPFLDVLFFN-EKQGIATGAYGLFYRTLDGGKTWTAERHASLLDPMDQEYLE 165
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNI 305
E+F + ++S L+ D + AG +G+L K+TN G++W E+ +
Sbjct: 166 DIRKEDEDFYQQELESI-LPHLNRITLDGDTLYLAGEAGLLAKSTNMGESW--ERYYVDY 222
Query: 306 AANLYSVKFINEKKGFVLG 324
+ + +K ++E +G
Sbjct: 223 TGSFFDIKPLDENTVLAVG 241
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 238 RGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI 297
RG L G T++ VP QS VG D WA G V+L +++ G+TW
Sbjct: 52 RGHVLVSEDGEAFTQK--AVPTQSTLTATTVVG----DNIWAVGHDAVILHSSDKGETWE 105
Query: 298 REKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
+ ++ V F NEK+G G G+ + L
Sbjct: 106 IQNFQPDLQRPFLDVLFFNEKQGIATGAYGLFYRTL 141
>gi|398871823|ref|ZP_10627133.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM74]
gi|398205240|gb|EJM92027.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM74]
Length = 350
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ + W + + + LLD+ F D++ GF +G +L+ET DGGK W
Sbjct: 121 QILASEDGGATWTKQFEDLTRESPLLDVWF--KDVDSGFAVGAYGSLMETTDGGKHWEDA 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y NSI+ G +IVG+ + + D G++WE++ P L G +
Sbjct: 179 S-DRLDNED-QYHLNSIAAVKDAGLFIVGEQGSMFRSPDWGQTWEKLEGPYEGSLFGVIG 236
Query: 210 FWQPH 214
QP+
Sbjct: 237 TAQPN 241
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L ++DGG TW +
Sbjct: 84 SDDQGATWTQAKVPTR---ALLTSVFFVDD-KHGWAVGHDAQILASEDGGATW------T 133
Query: 157 AEEEDFNYR--FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + FK + G+ VG L+ T+D G+ WE S +L + Q
Sbjct: 134 KQFEDLTRESPLLDVWFKDVDSGFAVGAYGSLMETTDGGKHWE--DASDRLDNED---QY 188
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H ++A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 189 HLNSIAA-------VKDAGLFIVGEQGSMFRSPDWGQTWEKLEGPYEGSLFGV--IGTAQ 239
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW 296
+ A G G L ++T+ G TW
Sbjct: 240 PNTLLAYGLRGNLYRSTDFGTTW 262
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P + L H AV Q +
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGATWTQAKVPTRALLTSVFFVDDKHGWAVGHDAQILA 124
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++FE++ +S +LDV ++ D +A G G L
Sbjct: 125 SEDGGATW----------------TKQFEDLTRESP---LLDVWFKDVDSGFAVGAYGSL 165
Query: 287 LKTTNGGKTWIREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
++TT+GGK W E A+D + +L S+ + + F++G G + +
Sbjct: 166 METTDGGKHW--EDASDRLDNEDQYHLNSIAAVKDAGLFIVGEQGSMFR 212
>gi|395497986|ref|ZP_10429565.1| BNR/Asp-box repeat domain-containing protein [Pseudomonas sp. PAMC
25886]
Length = 346
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 87/201 (43%), Gaps = 23/201 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L + DGG TW +
Sbjct: 79 SDDQGATWTQAKVPTRQ---LLTAVFFADD-QHGWAVGHDAQILASTDGGLTWTQQFQDL 134
Query: 157 AEEEDFNYRFNSISFK-GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + FK G+ VG L+ T+D G++W+ + S +L + Q H
Sbjct: 135 KREA----PLLDVWFKDASNGFAVGAYGALIETTDGGKTWDDV--SDRLDNED---QYHL 185
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 186 NAIAH-------VKDAGLFIVGEQGSMFRSPDEGQTWEKLEGPYEGSLFGV--IGTAQAQ 236
Query: 276 EAWAAGGSGVLLKTTNGGKTW 296
A G G L ++T+ G TW
Sbjct: 237 TLLAYGLRGNLFRSTDFGSTW 257
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 25/169 (14%)
Query: 168 SISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNM 225
+ GK VG +L++ D G +W ++P L H AV Q +
Sbjct: 59 DVVHAGKRLVAVGDRGHILYSDDQGATWTQAKVPTRQLLTAVFFADDQHGWAVGHDAQIL 118
Query: 226 GWRADGGL-WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSG 284
DGGL W T++F+++ ++ +LDV ++ +A G G
Sbjct: 119 A-STDGGLTW----------------TQQFQDLKREAP---LLDVWFKDASNGFAVGAYG 158
Query: 285 VLLKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L++TT+GGKTW + ++ + +L ++ + + F++G G + +
Sbjct: 159 ALIETTDGGKTWDDVSDRLDNEDQYHLNAIAHVKDAGLFIVGEQGSMFR 207
>gi|407687794|ref|YP_006802967.1| BNR repeat-containing protein [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407291174|gb|AFT95486.1| BNR repeat-containing protein [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 348
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 34/259 (13%)
Query: 79 SLSISLAATTGL-YEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+++ +AAT + Y A +EEA A P+ VLLDI D ++G R
Sbjct: 4 TIAACIAATFAVNYSTTAIAEEAFMA------PLVEQSVLLDI----DADTFVVIVGERG 53
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
+L ++DG + + +++P+ + + G+ W VG A++LH+SD GE+WE
Sbjct: 54 HVLVSEDG-EAFNQKAVPTQS------TLTATTVVGENIWAVGHDAVILHSSDKGETWEI 106
Query: 198 IPLSSQLPG---DMAFWQPHNRAVARRIQNMGWRA-DGG-LWLLVRGGGL-------FLS 245
L D+ F+ + +A + +R DGG W R L +L
Sbjct: 107 QNFQPDLQRPFLDVLFFN-EKQGIATGAYGLFYRTLDGGKTWTAERHASLLDPMDQEYLE 165
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNI 305
E+F + ++S L+ D + AG +G+L K+TN G++W E+ +
Sbjct: 166 DIRKEDEDFYQQELESI-LPHLNRITLDGDTLYLAGEAGLLAKSTNMGESW--ERYYVDY 222
Query: 306 AANLYSVKFINEKKGFVLG 324
+ + +K ++E +G
Sbjct: 223 TGSFFDIKPLDENTVLAVG 241
>gi|440740189|ref|ZP_20919683.1| hypothetical protein A986_17848 [Pseudomonas fluorescens BRIP34879]
gi|447916932|ref|YP_007397500.1| hypothetical protein H045_09685 [Pseudomonas poae RE*1-1-14]
gi|440377755|gb|ELQ14395.1| hypothetical protein A986_17848 [Pseudomonas fluorescens BRIP34879]
gi|445200795|gb|AGE26004.1| hypothetical protein H045_09685 [Pseudomonas poae RE*1-1-14]
Length = 331
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + + W + + + LLDI F +D +HG +G L+ET DGG TW
Sbjct: 101 QILASTDGGATWVQQFQDLKREAPLLDIWF--NDASHGLAVGAYGALIETTDGGTTWNDV 158
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N+I+ G +IVG+ + +SD G++WE++ P L G +
Sbjct: 159 S-DRLDNED-QYHLNAIAAIKDAGLFIVGEQGSMFRSSDNGQTWEKLEGPYEGSLFGVIG 216
Query: 210 FWQPH 214
QP
Sbjct: 217 TAQPQ 221
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G W ++P L H AV Q +
Sbjct: 45 VVHAGKRLVAVGDRGHILYSDDQGSHWTQAKVPTRQLLTAVFFIDDKHGWAVGHDAQILA 104
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W+ ++F+++ ++ +LD+ + A G G L
Sbjct: 105 STDGGATWV----------------QQFQDLKREAP---LLDIWFNDASHGLAVGAYGAL 145
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++TT+GG TW + ++ + +L ++ I + F++G G + +
Sbjct: 146 IETTDGGTTWNDVSDRLDNEDQYHLNAIAAIKDAGLFIVGEQGSMFR 192
>gi|423094913|ref|ZP_17082709.1| BNR/Asp-box repeat domain protein [Pseudomonas fluorescens Q2-87]
gi|397884554|gb|EJL01037.1| BNR/Asp-box repeat domain protein [Pseudomonas fluorescens Q2-87]
Length = 350
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 20/220 (9%)
Query: 4 SLRLSEPMMLVKPSLSSLF-------APRLNRTNAQAQQPRFISTSRACSLPSSDSSSSS 56
S LS P+M V S + + A + + R ++ + SD SS
Sbjct: 31 SAVLSAPVMAVAASTTDIIYSVESAKASKTLMLDVVHAGQRLVAVGDRGHIVYSDDQGSS 90
Query: 57 SSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVV 116
+ + + RQ + TA + G Q S++ S W + + +
Sbjct: 91 WTQAK----VPTRQLL--TAVFFVDDKHGWAVGHDAQILASDDGGSTWTKQFEDLAREAP 144
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D + GF +G LL T DGGK W S E+ F+ N+I+ G
Sbjct: 145 LLDVWF--KDASTGFAVGAYGALLATTDGGKHWEDASDRLDNEDQFH--LNAIAAVKDAG 200
Query: 177 -WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
+IVG+ + ++D G+SWE+I P L G + QP
Sbjct: 201 LFIVGESGSMFRSADWGQSWEKIEGPYEGSLFGVIGIAQP 240
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 27/159 (16%)
Query: 179 VGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
VG ++++ D G SW ++P L H AV Q + G W
Sbjct: 75 VGDRGHIVYSDDQGSSWTQAKVPTRQLLTAVFFVDDKHGWAVGHDAQILASDDGGSTW-- 132
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
T++FE++ +R +LDV ++ +A G G LL TT+GGK W
Sbjct: 133 --------------TKQFEDL---AREAPLLDVWFKDASTGFAVGAYGALLATTDGGKHW 175
Query: 297 IREKAADNIAA----NLYSVKFINEKKGFVLGNDGVLLQ 331
E A+D + +L ++ + + F++G G + +
Sbjct: 176 --EDASDRLDNEDQFHLNAIAAVKDAGLFIVGESGSMFR 212
>gi|398840534|ref|ZP_10597768.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM102]
gi|398110116|gb|EJM00024.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM102]
Length = 355
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 106/239 (44%), Gaps = 26/239 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR-SIP 155
S++ W + +P LL F DD HG+ +G +L ++DGG TW +
Sbjct: 84 SDDQGVTWAQAKVPTRQ---LLTAVFFVDD-KHGWAVGHDAQILASEDGGITWTKQFEDL 139
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
+ E + F ++ G+ VG LL T+D G++WE + S +L + Q H
Sbjct: 140 TRESPLLDVWFKDVN----SGFAVGAYGALLETTDGGKNWENV--SDRLDNED---QLHL 190
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
++A D G++++ G +F S G T E E P + FG+ +G
Sbjct: 191 NSIAA-------VKDSGIFIVGEQGSMFRSADDGQTWEKLEGPYEGSLFGV--IGTAQPA 241
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G L ++T+ G TW + KAA + L +++ ++GN G +++
Sbjct: 242 TLLAYGLRGNLYRSTDFGSTWEQVELKAARGALEFGLSGATLLDDGSIVIVGNGGSIVR 300
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + + + LLD+ F D+N GF +G LLET DGGK W
Sbjct: 121 QILASEDGGITWTKQFEDLTRESPLLDVWF--KDVNSGFAVGAYGALLETTDGGKNWENV 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ + NSI+ G +IVG+ + ++D G++WE++ P L G +
Sbjct: 179 SDRLDNEDQLH--LNSIAAVKDSGIFIVGEQGSMFRSADDGQTWEKLEGPYEGSLFGVIG 236
Query: 210 FWQP 213
QP
Sbjct: 237 TAQP 240
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P L H AV Q +
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGVTWAQAKVPTRQLLTAVFFVDDKHGWAVGHDAQILA 124
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++FE++ +S +LDV ++ + +A G G L
Sbjct: 125 SEDGGITW----------------TKQFEDLTRESP---LLDVWFKDVNSGFAVGAYGAL 165
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L+TT+GGK W + ++ + +L S+ + + F++G G + +
Sbjct: 166 LETTDGGKNWENVSDRLDNEDQLHLNSIAAVKDSGIFIVGEQGSMFR 212
>gi|424066768|ref|ZP_17804230.1| Glycosyl hydrolase, BNR repeat protein [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|408001969|gb|EKG42240.1| Glycosyl hydrolase, BNR repeat protein [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
Length = 369
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 133/314 (42%), Gaps = 34/314 (10%)
Query: 28 RTNAQAQQPRFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLA-- 85
RT A + S +LP+ S + +++ ++ + + + + TL L ++ A
Sbjct: 29 RTRLCAGMSLAVVASSLFALPAMAGSEALATAVAADAPVYAIESAKASRTLLLDVAHAGA 88
Query: 86 --ATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETK 143
G + S++ + W + +P LL F D+ HG+ +G +L +
Sbjct: 89 RLVVVGDHGHILLSDDQGNTWSQARVPTRQ---LLTAVFFVDE-QHGWAVGHDAQVLASS 144
Query: 144 DGGKTWAPRSIPSAEEEDFNYR--FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPL 200
DGGKTW + + ED + FK + G +G +LL T+D G+ WE
Sbjct: 145 DGGKTW------NKQFEDLKREAPLLDVWFKDLDNGLAIGAYGLLLSTADGGQHWE--DF 196
Query: 201 SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQ 260
S +L + Q H +A+ D GL+++ G +F S+ G T E P Q
Sbjct: 197 SDRLDNED---QYHLNGIAQ-------VKDAGLFIVGEAGSMFRSRDEGQTWEKIAGPYQ 246
Query: 261 SRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINE 317
FG+ +G A G G L ++++ G +W I K A + L S + +
Sbjct: 247 GSLFGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASATLLAD 304
Query: 318 KKGFVLGNDGVLLQ 331
++GN G +++
Sbjct: 305 DSLVLVGNGGSVMR 318
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 38/225 (16%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + W + + + LLD+ F DL++G +G LL T DGG+ W
Sbjct: 139 QVLASSDGGKTWNKQFEDLKREAPLLDVWF--KDLDNGLAIGAYGLLLSTADGGQHWEDF 196
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N I+ G +IVG+ + + D G++WE+I P L G +
Sbjct: 197 S-DRLDNED-QYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEKIAGPYQGSLFGVIG 254
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRG---- 263
QP LL G G LF S G + + P++ +G
Sbjct: 255 TAQPST-------------------LLAYGLRGNLFRSSDFGDSWQ----PIELKGARGP 291
Query: 264 --FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
FG+ + D G G ++++T+ G+T+ D I+
Sbjct: 292 LEFGLASATLLADDSLVLVGNGGSVMRSTDDGETFAVFNRPDRIS 336
>gi|171058846|ref|YP_001791195.1| glycosyl hydrolase [Leptothrix cholodnii SP-6]
gi|170776291|gb|ACB34430.1| glycosyl hydrolase [Leptothrix cholodnii SP-6]
Length = 368
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + DGG W +P + + ++SF + GW VG ++LH++D
Sbjct: 66 VGQRGHVLWSDDGGARWQQAQVPVSSD------LVAVSFADARNGWAVGHDGVILHSNDG 119
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G SW R QL G R + + RAD L L++ ++
Sbjct: 120 GASWSR-----QLDG---------RGLGALLSEAYGRADALPQLDAATRSTLLAEAERLS 165
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW-IREKAADNIAA-NL 309
+ E+P LDV + + G G++L+T +GG+ W A DN A +L
Sbjct: 166 AQGAELP-------WLDVWFADAQNGYVVGAFGLILRTRDGGQHWEPLMHALDNPKALHL 218
Query: 310 YSVKFINEKKGFVLGNDGVLLQ 331
++++ + ++ +++G G++L+
Sbjct: 219 HALRGVG-REFYIVGEQGLVLK 239
>gi|254514535|ref|ZP_05126596.1| glycosyl hydrolase [gamma proteobacterium NOR5-3]
gi|219676778|gb|EED33143.1| glycosyl hydrolase [gamma proteobacterium NOR5-3]
Length = 368
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 29/227 (12%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDFNYRFNSISFKGKE 175
LLDIAF D + +G ++ + DGG +W + +P + ++SF G +
Sbjct: 32 LLDIAFAGDRM---VAVGAAGLIVISDDGGASWEQAKHVP------VSATLTAVSFCGPD 82
Query: 176 -GWIVGKPAILLHTSDAGESW-ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL 233
GW VG ++LHT D G +W ++ +A+ + A+ ++ + DGG
Sbjct: 83 LGWAVGHAGVVLHTQDGGLTWVKQFDGYRAAEAFLAYAKEQRLALESQLASF---VDGG- 138
Query: 234 WLLVRGGGL-------FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
V GL L I +E + LDV + + A G G+
Sbjct: 139 ---VDAAGLDRSDIEYALDDAIFIEDEAQLAVESGPADPFLDVEFLDEQRGLAVGAYGMS 195
Query: 287 LKTTNGGKTW-IREKAADNIAA-NLYSVKFINEKKGFVLGNDGVLLQ 331
+T++GG TW I + +N+ +LY+V + +++ ++ G G+L +
Sbjct: 196 FRTSDGGATWHINQAGIENMDRFHLYAV-YARDQQVYLAGEAGLLFR 241
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN-YRFNS 168
P DP LD+ F+ D G +G T DGG TW I A E+ + + +
Sbjct: 171 PADP---FLDVEFL--DEQRGLAVGAYGMSFRTSDGGATW---HINQAGIENMDRFHLYA 222
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERI 198
+ + ++ ++ G+ +L + D G+S+ER
Sbjct: 223 VYARDQQVYLAGEAGLLFRSDDEGQSFERF 252
>gi|443472767|ref|ZP_21062793.1| BNR repeat protein [Pseudomonas pseudoalcaligenes KF707]
gi|442903209|gb|ELS28622.1| BNR repeat protein [Pseudomonas pseudoalcaligenes KF707]
Length = 357
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 119/283 (42%), Gaps = 36/283 (12%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S S + + + RQ + TA L G Q SE+ + W + ++
Sbjct: 90 SDDDGKSWTQAKVPSRQML--TAVFFLDDKKGWAVGHDAQILASEDGGATWALQFQDLER 147
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
LLDI F D + GF +G LL T+DGG+ W S + ED Y N+I+
Sbjct: 148 EAPLLDIWF--KDADTGFAVGAYGALLSTRDGGRNWEDVS-DRLDNED-QYHLNAIATVK 203
Query: 174 KEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD 230
G ++VG+ + ++D GE+WER+ P L G +G
Sbjct: 204 DSGLFVVGEMGSMFRSADWGETWERLEGPYEGSLFG-----------------VLGTGET 246
Query: 231 GGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS-----QDEAWAAGGSGV 285
GG+ G LF S G T +E +P+ S G G L+ G G G
Sbjct: 247 GGVIAYGLRGHLFRSADFGAT--WETIPL-SAGNGELEFGLSGGTLLPDGSLVVVGHGGS 303
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
+LK+T+GG+++ +D + +L +V ++ ++G GV
Sbjct: 304 VLKSTDGGRSFKVVNRSDRL--SLAAVTADDKGNLILVGQGGV 344
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 72/167 (43%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNR--AVARRIQNMG 226
++ GK VG +L++ D G+SW + + S+ F+ + AV Q +
Sbjct: 71 VAHAGKRLVAVGDRGHILYSDDDGKSWTQAKVPSRQMLTAVFFLDDKKGWAVGHDAQILA 130
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W L +F+++ ++ +LD+ ++ D +A G G L
Sbjct: 131 SEDGGATWAL----------------QFQDLEREAP---LLDIWFKDADTGFAVGAYGAL 171
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L T +GG+ W + ++ + +L ++ + + FV+G G + +
Sbjct: 172 LSTRDGGRNWEDVSDRLDNEDQYHLNAIATVKDSGLFVVGEMGSMFR 218
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 51/217 (23%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
+LLD+A L +G R +L + D GK+W +PS + ++ F K
Sbjct: 67 LLLDVAHAGKRL---VAVGDRGHILYSDDDGKSWTQAKVPSRQ------MLTAVFFLDDK 117
Query: 175 EGWIVGKPAILLHTSDAGESW--ERIPLSSQLP--------GDMAF-------------- 210
+GW VG A +L + D G +W + L + P D F
Sbjct: 118 KGWAVGHDAQILASEDGGATWALQFQDLEREAPLLDIWFKDADTGFAVGAYGALLSTRDG 177
Query: 211 ---WQPHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPV 259
W+ V+ R+ N + D GL+++ G +F S G T E E P
Sbjct: 178 GRNWED----VSDRLDNEDQYHLNAIATVKDSGLFVVGEMGSMFRSADWGETWERLEGPY 233
Query: 260 QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ FG+L G A+ G G L ++ + G TW
Sbjct: 234 EGSLFGVLGTGETGGVIAY--GLRGHLFRSADFGATW 268
>gi|422620891|ref|ZP_16689563.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae pv.
japonica str. M301072]
gi|440721355|ref|ZP_20901754.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae
BRIP34876]
gi|440724402|ref|ZP_20904684.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae
BRIP34881]
gi|330901243|gb|EGH32662.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae pv.
japonica str. M301072]
gi|440363776|gb|ELQ00935.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae
BRIP34876]
gi|440370046|gb|ELQ06992.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae
BRIP34881]
Length = 334
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 128/303 (42%), Gaps = 34/303 (11%)
Query: 39 ISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAA----TTGLYEQP 94
+ S +LP+ S + S ++++ + + + + TL L ++ A G +
Sbjct: 5 VVASSLFALPAMAGSEAVSMATAADTPVYAIESAKASRTLLLGVAHAGARLVVVGDHGHI 64
Query: 95 AKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI 154
S++ S W + +P LL F D+ HG+ +G +L + DGGK+W
Sbjct: 65 LFSDDQGSTWSQARVPTRQ---LLTAVFFVDE-QHGWAVGHDAQVLASSDGGKSW----- 115
Query: 155 PSAEEEDFNYR--FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFW 211
+ + ED + FK + G +G +LL T+D G WE + S +L + +
Sbjct: 116 -NKQFEDLKREAPLLDVWFKDLDNGLAIGAYGLLLSTADGGLHWEDV--SDRLDNEDQY- 171
Query: 212 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGY 271
+ + D GL+++ G +F S+ G T E P Q FG+ +G
Sbjct: 172 ---------HLNGITQVKDAGLFIVGEAGSMFRSRDEGRTWEKIAGPYQGSLFGV--IGT 220
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGV 328
A G G L ++++ G +W I K A + L S + + ++GN G
Sbjct: 221 AQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASATLLADDSLVLVGNGGS 280
Query: 329 LLQ 331
+++
Sbjct: 281 VMR 283
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 104/264 (39%), Gaps = 40/264 (15%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S S+ S + + RQ + TA + G Q S + +W + + +
Sbjct: 67 SDDQGSTWSQARVPTRQLL--TAVFFVDEQHGWAVGHDAQVLASSDGGKSWNKQFEDLKR 124
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
LLD+ F DL++G +G LL T DGG W S + ED Y N I+
Sbjct: 125 EAPLLDVWF--KDLDNGLAIGAYGLLLSTADGGLHWEDVS-DRLDNED-QYHLNGITQVK 180
Query: 174 KEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD 230
G +IVG+ + + D G +WE+I P L G + QP
Sbjct: 181 DAGLFIVGEAGSMFRSRDEGRTWEKIAGPYQGSLFGVIGTAQPST--------------- 225
Query: 231 GGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRG------FGILDVGYRSQDEAWAAGG 282
LL G G LF S G + + P++ +G FG+ + D G
Sbjct: 226 ----LLAYGLRGNLFRSSDFGDSWQ----PIELKGARGPLEFGLASATLLADDSLVLVGN 277
Query: 283 SGVLLKTTNGGKTWIREKAADNIA 306
G ++++T+ G+T+ D I+
Sbjct: 278 GGSVMRSTDDGETFAVFNRPDRIS 301
>gi|77459452|ref|YP_348959.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas fluorescens
Pf0-1]
gi|77383455|gb|ABA74968.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
Length = 342
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 30/240 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P +L + FV D HG+ +G +L + DGG TW +
Sbjct: 76 SDDQGKTWTQAKVPSRQ--LLTAVYFVDD--KHGWAVGHDAQILASADGGLTW------T 125
Query: 157 AEEEDFNYR--FNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + FK G VG LL T+D G++WE + S +L + F
Sbjct: 126 KQFEDLKRESPLLDVWFKDVNSGLAVGAYGALLETTDGGKNWEDV--SDRLDNEDQF--- 180
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H A+A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 181 HLNAIAS-------VKDAGLFIVGESGSMFRSADWGQTWEKLEGPYEGSLFGV--IGTAQ 231
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++T+ G TW + KAA ++ L + + ++GN G ++
Sbjct: 232 PQTLLAYGLRGNLYRSTDFGSTWEQVELKAARGSLEFGLSGATLLEDGSIVIVGNGGSVV 291
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WL 235
VG +L++ D G++W ++P L H AV Q + ADGGL W
Sbjct: 67 VGDRGHILYSDDQGKTWTQAKVPSRQLLTAVYFVDDKHGWAVGHDAQILA-SADGGLTW- 124
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
T++FE++ +S +LDV ++ + A G G LL+TT+GGK
Sbjct: 125 ---------------TKQFEDLKRESP---LLDVWFKDVNSGLAVGAYGALLETTDGGKN 166
Query: 296 W--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W + ++ + +L ++ + + F++G G + +
Sbjct: 167 WEDVSDRLDNEDQFHLNAIASVKDAGLFIVGESGSMFR 204
>gi|398996788|ref|ZP_10699638.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM21]
gi|398126092|gb|EJM15540.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM21]
Length = 371
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 46/223 (20%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
VL + D L +G R ++ + DGG W +P + S SF +
Sbjct: 64 VLTRVVLAGDRL---VAIGERGLVVLSDDGGHQWRQARVP------VSVTLTSASFADAR 114
Query: 175 EGWIVGKPAILLHTSDAGESW----ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD 230
+GWI G ++LHTSD GESW + + L+ N RRIQ+
Sbjct: 115 QGWIAGHSGVVLHTSDGGESWSLQTDGVALAKAALAQAQGLPVANEDRERRIQD------ 168
Query: 231 GGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTT 290
I ++ + P +L + + G G+ T
Sbjct: 169 ----------------AQRIVDDGADKP-------LLSICFADAQRGMVVGAFGLAATTE 205
Query: 291 NGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+GGKTW R+ + ++ +LY+V +++ V G GVL+
Sbjct: 206 DGGKTWTPCRDHLPNPMSMHLYAVTH-HDRTWVVAGEQGVLMH 247
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP--RSIPSAEEEDFNYRFNSISFKGK 174
LL I F D G ++G T+DGGKTW P +P+ + +++ +
Sbjct: 181 LLSICFA--DAQRGMVVGAFGLAATTEDGGKTWTPCRDHLPNP----MSMHLYAVTHHDR 234
Query: 175 EGWIVGKPAILLHTSDAGESWERI 198
+ G+ +L+H+S+ G S++ +
Sbjct: 235 TWVVAGEQGVLMHSSNDGASFQSL 258
>gi|398913089|ref|ZP_10656285.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM49]
gi|398181406|gb|EJM68974.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM49]
Length = 350
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + + + LLD+ F D++ GF +G +L+ET DGGK W
Sbjct: 121 QILASEDGGVTWTKQFEDLKRESPLLDVWF--KDVDSGFAVGAYGSLMETTDGGKHWEDA 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N+I+ G +IVG+ + ++D G++WE++ P L G +
Sbjct: 179 S-DRLDNED-QYHLNAIAAVKDAGLFIVGEQGSMFRSADWGQTWEKLEGPYEGSLFGVIG 236
Query: 210 FWQPH 214
QP+
Sbjct: 237 TAQPN 241
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 30/241 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L ++DGG TW +
Sbjct: 84 SDDQGATWTQAKVPTRA---LLTSVFFVDD-KHGWAVGHDAQILASEDGGVTW------T 133
Query: 157 AEEEDFNYR--FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + FK + G+ VG L+ T+D G+ WE S +L + Q
Sbjct: 134 KQFEDLKRESPLLDVWFKDVDSGFAVGAYGSLMETTDGGKHWE--DASDRLDNED---QY 188
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H A+A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 189 HLNAIAA-------VKDAGLFIVGEQGSMFRSADWGQTWEKLEGPYEGSLFGV--IGTAQ 239
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIR---EKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+ A G G L ++T+ G TW + E + L +++ ++GN G ++
Sbjct: 240 PNTLLAYGLRGNLYRSTDFGSTWAQVELEAERGALEFGLSGGTLLDDGSIVIVGNGGSVI 299
Query: 331 Q 331
+
Sbjct: 300 R 300
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P + L H AV Q +
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGATWTQAKVPTRALLTSVFFVDDKHGWAVGHDAQILA 124
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++FE++ +S +LDV ++ D +A G G L
Sbjct: 125 SEDGGVTW----------------TKQFEDLKRESP---LLDVWFKDVDSGFAVGAYGSL 165
Query: 287 LKTTNGGKTWIREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
++TT+GGK W E A+D + +L ++ + + F++G G + +
Sbjct: 166 METTDGGKHW--EDASDRLDNEDQYHLNAIAAVKDAGLFIVGEQGSMFR 212
>gi|422659668|ref|ZP_16722091.1| BNR/Asp-box repeat protein [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|331018284|gb|EGH98340.1| BNR/Asp-box repeat protein [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 328
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DLN+GF +G LL T DGG+ W
Sbjct: 98 QILASSDGGKSWNKQFEDLKREAPLLDVWF--KDLNNGFAIGAYGALLNTGDGGRHWQDV 155
Query: 153 SIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ Y N I+ K +IVG+ + + D G++WE++ P L G +
Sbjct: 156 SYRLDNED--QYHLNGIAQIKDAGLFIVGEAGSMFRSRDEGQTWEKLEGPYQGSLFGVVG 213
Query: 210 FWQP 213
QP
Sbjct: 214 TAQP 217
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 43/213 (20%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L +G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 38 LLLDVAHAGARL---VAVGDHGHILYSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 88
Query: 176 -GWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVA------------- 219
GW VG A +L +SD G+SW + L + P +++ N A
Sbjct: 89 HGWAVGHDAQILASSDGGKSWNKQFEDLKREAPLLDVWFKDLNNGFAIGAYGALLNTGDG 148
Query: 220 -RRIQNMGWR---------------ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
R Q++ +R D GL+++ G +F S+ G T E E P Q
Sbjct: 149 GRHWQDVSYRLDNEDQYHLNGIAQIKDAGLFIVGEAGSMFRSRDEGQTWEKLEGPYQGSL 208
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
FG+ VG A G G L ++++ G TW
Sbjct: 209 FGV--VGTAQPATLLAYGLRGNLFRSSDFGDTW 239
>gi|422664741|ref|ZP_16724614.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330975160|gb|EGH75226.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 334
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 30/241 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F D+ HG+ +G +L + DGGKTW +
Sbjct: 67 SDDQGNTWSQARVPTRQ---LLTAVFFVDE-QHGWAVGHDAQVLASSDGGKTW------N 116
Query: 157 AEEEDFNYR--FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + FK + G +G +LL T+D G+ WE + S +L + Q
Sbjct: 117 KQFEDLKREAPLLDVWFKDLDNGLAIGAYGLLLSTADGGQHWEDV--SDRLDNED---QY 171
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H +A+ D GL+++ G +F S+ G T E P Q FG+ +G
Sbjct: 172 HLNGIAQ-------VKDAGLFIVGEAGSMFRSRDEGRTWEKIAGPYQGSLFGV--IGTAQ 222
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++++ G +W I K A + L S + + ++GN G ++
Sbjct: 223 PSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASATLLADDSLVLVGNGGSVM 282
Query: 331 Q 331
+
Sbjct: 283 R 283
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 91/225 (40%), Gaps = 38/225 (16%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + W + + + LLD+ F DL++G +G LL T DGG+ W
Sbjct: 104 QVLASSDGGKTWNKQFEDLKREAPLLDVWF--KDLDNGLAIGAYGLLLSTADGGQHWEDV 161
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N I+ G +IVG+ + + D G +WE+I P L G +
Sbjct: 162 S-DRLDNED-QYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGRTWEKIAGPYQGSLFGVIG 219
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRG---- 263
QP LL G G LF S G + + P++ +G
Sbjct: 220 TAQPST-------------------LLAYGLRGNLFRSSDFGDSWQ----PIELKGARGP 256
Query: 264 --FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
FG+ + D G G ++++T+ G+T+ D I+
Sbjct: 257 LEFGLASATLLADDSLVLVGNGGSVMRSTDDGETFAVFNRPDRIS 301
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
++ G +VG +L + D G +W R+P L + H AV Q +
Sbjct: 48 VAHAGARLVVVGDHGHILLSDDQGNTWSQARVPTRQLLTAVFFVDEQHGWAVGHDAQVLA 107
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W ++FE++ ++ +LDV ++ D A G G+L
Sbjct: 108 SSDGGKTW----------------NKQFEDLKREAP---LLDVWFKDLDNGLAIGAYGLL 148
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L T +GG+ W + ++ + +L + + + F++G G + +
Sbjct: 149 LSTADGGQHWEDVSDRLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFR 195
>gi|398994409|ref|ZP_10697311.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM21]
gi|398132281|gb|EJM21561.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM21]
Length = 350
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 103/239 (43%), Gaps = 26/239 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L ++DGG TW +
Sbjct: 84 SDDQGTTWVQAKVPTRA---LLTSVFFVDD-KHGWAVGHDAQILASEDGGATWTKQFDDL 139
Query: 157 AEEEDFNYRFNSISFK-GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + FK G+ VG LL T+D G+ WE S +L + Q H
Sbjct: 140 KREA----PLLDVWFKDANSGYAVGAYGALLETTDGGKHWE--DASDRLDNED---QLHL 190
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
+A D GL+++ G +F S G T E E P + FG+ +G +
Sbjct: 191 NGIAS-------VKDAGLFIVGEQGSMFRSADWGQTWEKVEGPYEGSLFGV--IGTAQAN 241
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G L ++T+ G TW + KAA + L +++ ++GN G +++
Sbjct: 242 TLLAYGLRGNLYRSTDFGSTWEQVELKAARGALEFGLSGATLLDDGSIVIVGNGGSVVR 300
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ + W + + + LLD+ F D N G+ +G LLET DGGK W
Sbjct: 121 QILASEDGGATWTKQFDDLKREAPLLDVWF--KDANSGYAVGAYGALLETTDGGKHWEDA 178
Query: 153 SIPSAEEEDFNYRFNSI-SFKGKEGWIVGKPAILLHTSDAGESWERI 198
S E+ + N I S K +IVG+ + ++D G++WE++
Sbjct: 179 SDRLDNEDQLH--LNGIASVKDAGLFIVGEQGSMFRSADWGQTWEKV 223
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 27/169 (15%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P + L H AV Q +
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGTTWVQAKVPTRALLTSVFFVDDKHGWAVGHDAQILA 124
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++F+++ ++ +LDV ++ + +A G G L
Sbjct: 125 SEDGGATW----------------TKQFDDLKREAP---LLDVWFKDANSGYAVGAYGAL 165
Query: 287 LKTTNGGKTWIREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
L+TT+GGK W E A+D + +L + + + F++G G + +
Sbjct: 166 LETTDGGKHW--EDASDRLDNEDQLHLNGIASVKDAGLFIVGEQGSMFR 212
>gi|407700119|ref|YP_006824906.1| BNR repeat-containing protein [Alteromonas macleodii str. 'Black
Sea 11']
gi|407249266|gb|AFT78451.1| BNR repeat-containing protein [Alteromonas macleodii str. 'Black
Sea 11']
Length = 348
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 115/259 (44%), Gaps = 34/259 (13%)
Query: 79 SLSISLAATTGL-YEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+++ +AAT + Y A +EEA A P+ VLLDI D ++G R
Sbjct: 4 TIAACIAATFAVNYSTTAFAEEAFMA------PLVEQSVLLDI----DADKFVVIVGERG 53
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
+L ++DG + + +++P+ + + G W VG A++LH+SD GE+WE
Sbjct: 54 HVLVSEDG-EAFNQKAVPTQS------TLTATTVVGDNIWAVGHDAVILHSSDKGETWEI 106
Query: 198 IPLSSQLPG---DMAFWQPHNRAVARRIQNMGWRA-DGG-LWLLVRGGGL-------FLS 245
+L D+ F+ + +A + +R DGG W R L +L
Sbjct: 107 QNFQPELQRPFLDVLFFD-EKQGIATGAYGLFYRTLDGGKTWNAERHASLLDPMDQEYLE 165
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNI 305
EEF + ++S L+ D + AG +G+L K+ N G++W E+ +
Sbjct: 166 DIRKENEEFYQQELESI-LPHLNRVTLDGDTLYLAGEAGLLAKSNNMGESW--ERYYVDY 222
Query: 306 AANLYSVKFINEKKGFVLG 324
+ + +K ++E +G
Sbjct: 223 TGSFFDIKPLDENTVLAVG 241
>gi|120554982|ref|YP_959333.1| photosystem II stability/assembly factor protein [Marinobacter
aquaeolei VT8]
gi|120324831|gb|ABM19146.1| uncharacterized protein related to photosystem II
stability/assembly factor [Marinobacter aquaeolei VT8]
Length = 382
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 14/92 (15%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKT---WAPRSIPSAEEEDFNYRF 166
PV+P LD+ F +D NHGF++G +L T+DGG+T WAP+ + N+ +
Sbjct: 179 PVNP---FLDVWF--EDENHGFVVGAYGMILRTQDGGQTWEDWAPKL-----DNPTNFHY 228
Query: 167 NSISFKGKEGWIVGKPAILLHTS-DAGESWER 197
NSI+ +V A +H S D GESWE+
Sbjct: 229 NSIAEVAGGALVVVGEAGQIHVSVDGGESWEK 260
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
+G R ++ + D G++W +P A ++ F ++ GW+VG ++LH+SD+
Sbjct: 61 VGERGHVIYSDDQGQSWTQAEVPVA------VTLTAVDFGTEQHGWVVGHSGVVLHSSDS 114
Query: 192 GESWERIPLSSQLPGDMAFWQPHNR--AVARRIQNMGWRADGGL-WLLVRGGGLFLSKGT 248
GE+WE + L ++ ++ + RI+ L W L LF +
Sbjct: 115 GETWE-LQLDGIQAAELVIASKEDQIAELEERIEQAPEEEKADLEWAL---DDLFFAL-E 169
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ E PV LDV + ++ + G G++L+T +GG+TW
Sbjct: 170 NTQADMEIGPVNP----FLDVWFEDENHGFVVGAYGMILRTQDGGQTW 213
>gi|301386598|ref|ZP_07235016.1| BNR/Asp-box repeat protein [Pseudomonas syringae pv. tomato Max13]
gi|302063348|ref|ZP_07254889.1| BNR/Asp-box repeat protein [Pseudomonas syringae pv. tomato K40]
gi|302135341|ref|ZP_07261331.1| BNR/Asp-box repeat protein [Pseudomonas syringae pv. tomato NCPPB
1108]
Length = 328
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DLN+GF +G LL T DGG+ W +
Sbjct: 98 QILASSDGGKSWNKQFEDLKREAPLLDVWF--KDLNNGFAIGAYGALLNTGDGGRHW--Q 153
Query: 153 SIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
+ + + +Y N I+ K +IVG+ + + D G++WE++ P L G +
Sbjct: 154 DVSDRLDNEDHYHLNGIAQIKDAGLFIVGEAGSMFRSRDEGQTWEKLEGPYQGSLFGVVG 213
Query: 210 FWQP 213
QP
Sbjct: 214 TAQP 217
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 43/213 (20%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L +G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 38 LLLDVAHAGARL---VAVGDHGHILYSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 88
Query: 176 -GWIVGKPAILLHTSDAGESWERI--PLSSQLP-GDMAFWQPHN---------------- 215
GW VG A +L +SD G+SW + L + P D+ F +N
Sbjct: 89 HGWAVGHDAQILASSDGGKSWNKQFEDLKREAPLLDVWFKDLNNGFAIGAYGALLNTGDG 148
Query: 216 ----RAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
+ V+ R+ N + D GL+++ G +F S+ G T E E P Q
Sbjct: 149 GRHWQDVSDRLDNEDHYHLNGIAQIKDAGLFIVGEAGSMFRSRDEGQTWEKLEGPYQGSL 208
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
FG+ VG A G G L ++++ G TW
Sbjct: 209 FGV--VGTAQPATLLAYGLRGNLFRSSDFGDTW 239
>gi|326802591|ref|YP_004320410.1| oxidoreductase [Sphingobacterium sp. 21]
gi|326553355|gb|ADZ81740.1| oxidoreductase [Sphingobacterium sp. 21]
Length = 341
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 123 VPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV--G 180
+P+D + ++ GT+ T+ +T DGGK W + + EDF++R + ++F K+ +V G
Sbjct: 40 IPND-SVAWITGTKGTIAKTTDGGKNWTW--LIAKGYEDFDFR-SVVAFSDKKAVMVNAG 95
Query: 181 KPAILLHTSDAGESWERI---PLSSQLPGDMAFWQPHNRAV 218
PA++L T D GESWE++ + M FW V
Sbjct: 96 SPAVILLTEDGGESWEKVHSYDIKEIFYDGMGFWDEKRGIV 136
>gi|237800401|ref|ZP_04588862.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331023258|gb|EGI03315.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 346
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S ++ + +S+ RQ + TA + G Q S + +W + + +
Sbjct: 79 SDDQGATWTQASVPTRQLL--TAVFFVDEQHGWAVGHDAQILASNDGGKSWSKQFEDLKR 136
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
LLD+ F DLN+G +G LL T DGGK W + I + + Y N+I+
Sbjct: 137 EAPLLDVWF--KDLNNGLAVGAYGVLLSTGDGGKHW--QDISDRLDNEDQYHLNAIAQVK 192
Query: 174 KEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
+ G ++VG+ + + D G++WE+I P L G QP
Sbjct: 193 EAGLFVVGEAGSMFRSGDEGQTWEKIEGPYQGSLFGVTGTAQP 235
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 23/158 (14%)
Query: 178 IVGKPAILLHTSDAGESWER--IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
+VG +L + D G +W + +P L + H AV Q + G W
Sbjct: 69 VVGDHGHILFSDDQGATWTQASVPTRQLLTAVFFVDEQHGWAVGHDAQILASNDGGKSW- 127
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
+++FE++ ++ +LDV ++ + A G GVLL T +GGK
Sbjct: 128 ---------------SKQFEDLKREAP---LLDVWFKDLNNGLAVGAYGVLLSTGDGGKH 169
Query: 296 W--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W I ++ + +L ++ + E FV+G G + +
Sbjct: 170 WQDISDRLDNEDQYHLNAIAQVKEAGLFVVGEAGSMFR 207
>gi|387813652|ref|YP_005429134.1| hypothetical protein MARHY1231 [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381338664|emb|CCG94711.1| conserved hypothetical protein [Marinobacter hydrocarbonoclasticus
ATCC 49840]
Length = 364
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 14/92 (15%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKT---WAPRSIPSAEEEDFNYRF 166
PV+P LD+ F +D NHGF++G +L T+DGG+T WAP+ + N+ +
Sbjct: 161 PVNP---FLDVWF--EDENHGFVVGAYGMILRTQDGGQTWEDWAPKL-----DNPTNFHY 210
Query: 167 NSISFKGKEGWIVGKPAILLHTS-DAGESWER 197
NSI+ +V A +H S D GESWE+
Sbjct: 211 NSITEVAGGALVVVGEAGQIHVSVDGGESWEK 242
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
+G R ++ + D G++W +P A ++ F ++ GW+VG ++LH+SD+
Sbjct: 43 VGERGHVIYSDDQGQSWTQAEVPVA------VTLTAVDFGTEQHGWVVGHSGVVLHSSDS 96
Query: 192 GESWERIPLSSQLPGDMAFWQPHNR--AVARRIQNMGWRADGGL-WLLVRGGGLFLSKGT 248
GE+WE + L ++ ++ + RI+ L W L LF +
Sbjct: 97 GETWE-LQLDGIQAAELVIASKEDQIAELEERIEQAPEEEKADLEWAL---DDLFFAL-E 151
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ E PV LDV + ++ + G G++L+T +GG+TW
Sbjct: 152 NTQADMEIGPVNP----FLDVWFEDENHGFVVGAYGMILRTQDGGQTW 195
>gi|213968775|ref|ZP_03396916.1| BNR/Asp-box repeat protein [Pseudomonas syringae pv. tomato T1]
gi|213926378|gb|EEB59932.1| BNR/Asp-box repeat protein [Pseudomonas syringae pv. tomato T1]
Length = 342
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DLN+GF +G LL T DGG+ W +
Sbjct: 112 QILASSDGGKSWNKQFEDLKREAPLLDVWF--KDLNNGFAIGAYGALLNTGDGGRHW--Q 167
Query: 153 SIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
+ + + +Y N I+ K +IVG+ + + D G++WE++ P L G +
Sbjct: 168 DVSDRLDNEDHYHLNGIAQIKDAGLFIVGEAGSMFRSRDEGQTWEKLEGPYQGSLFGVVG 227
Query: 210 FWQP 213
QP
Sbjct: 228 TAQP 231
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L +G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 52 LLLDVAHAGARL---VAVGDHGHILYSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 102
Query: 176 -GWIVGKPAILLHTSDAGESWERI--PLSSQLP-GDMAFWQPHN---------------- 215
GW VG A +L +SD G+SW + L + P D+ F +N
Sbjct: 103 HGWAVGHDAQILASSDGGKSWNKQFEDLKREAPLLDVWFKDLNNGFAIGAYGALLNTGDG 162
Query: 216 ----RAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
+ V+ R+ N + D GL+++ G +F S+ G T E E P Q
Sbjct: 163 GRHWQDVSDRLDNEDHYHLNGIAQIKDAGLFIVGEAGSMFRSRDEGQTWEKLEGPYQGSL 222
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ VG A G G L ++++ G TW I A + L S + +
Sbjct: 223 FGV--VGTAQPATLLAYGLRGNLFRSSDFGDTWQPIELNGARGPVEFGLASATLLTDGTL 280
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 281 VLVGNGGSVMR 291
>gi|398978856|ref|ZP_10688102.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM25]
gi|398136520|gb|EJM25605.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM25]
Length = 342
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 30/240 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P +L + FV D HG+ +G +L ++DGG TW +
Sbjct: 76 SDDQGKTWTQAKVPSRQ--LLTAVYFVDD--KHGWAVGHDAQILASEDGGLTW------T 125
Query: 157 AEEEDFNYR--FNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + FK G VG LL T+D G+ WE + S +L + F
Sbjct: 126 KQFEDLKRESPLLDVWFKDVNSGLAVGAYGALLETTDGGKHWEDV--SDRLDNEDQF--- 180
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H A+A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 181 HLNAIAS-------VKDAGLFIVGESGSMFRSADWGQTWEKLEGPYEGSLFGV--IGTAQ 231
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++T+ G TW + KAA ++ L + + ++GN G ++
Sbjct: 232 PQTLLAYGLRGNLYRSTDFGSTWEQVELKAARGSLEFGLSGATLLADGSIVIVGNGGSVV 291
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + + + LLD+ F D+N G +G LLET DGGK W
Sbjct: 113 QILASEDGGLTWTKQFEDLKRESPLLDVWF--KDVNSGLAVGAYGALLETTDGGKHWEDV 170
Query: 153 SIPSAEEEDFNYRFNSI-SFKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ F+ N+I S K +IVG+ + ++D G++WE++ P L G +
Sbjct: 171 SDRLDNEDQFH--LNAIASVKDAGLFIVGESGSMFRSADWGQTWEKLEGPYEGSLFGVIG 228
Query: 210 FWQPH 214
QP
Sbjct: 229 TAQPQ 233
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 25/158 (15%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WL 235
VG +L++ D G++W ++P L H AV Q + DGGL W
Sbjct: 67 VGDRGHILYSDDQGKTWTQAKVPSRQLLTAVYFVDDKHGWAVGHDAQILA-SEDGGLTW- 124
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
T++FE++ +S +LDV ++ + A G G LL+TT+GGK
Sbjct: 125 ---------------TKQFEDLKRESP---LLDVWFKDVNSGLAVGAYGALLETTDGGKH 166
Query: 296 W--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W + ++ + +L ++ + + F++G G + +
Sbjct: 167 WEDVSDRLDNEDQFHLNAIASVKDAGLFIVGESGSMFR 204
>gi|358635613|dbj|BAL22910.1| hypothetical protein AZKH_0564 [Azoarcus sp. KH32C]
Length = 339
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 35/200 (17%)
Query: 47 LPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWER 106
+ ++D S +S++ +SS + F + A +A G + +S++ + W R
Sbjct: 120 IVTADGGHSWTSAALPASSNPNKLFRVRIAN-----GVAWAVGEFGAVLRSDDRGATWSR 174
Query: 107 VYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRF 166
V D DI FV D G+L+G L+ T DGG TW P S P+
Sbjct: 175 VLPEEDR--AWNDIGFVGD---AGWLVGEFGALMRTTDGGSTWTPVSTPN------KVSL 223
Query: 167 NSISFK-GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNM 225
++F+ + G VG LL T+D G SW ++P AF + H +V
Sbjct: 224 MGVAFRDARHGVAVGLAGTLLVTADGGASWRQVP---------AFTREHFYSVM------ 268
Query: 226 GWRADGGLWLLVRGGGLFLS 245
W D G WL+V G+ S
Sbjct: 269 -W--DDGRWLVVGDKGVMAS 285
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 30/234 (12%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
+SE+ ++W R D V L IA D +G ++ T DGG +W ++P
Sbjct: 80 RSEDGGNSWARQTSGTD--VNLQGIA--AWDSAGAIAVGNDGVVIVTADGGHSWTSAALP 135
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
++ + +R + W VG+ +L + D G +W R+ LP + W
Sbjct: 136 ASSNPNKLFR---VRIANGVAWAVGEFGAVLRSDDRGATWSRV-----LPEEDRAWN--- 184
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
++G+ D G WL+ G L + G T P + ++ V +R
Sbjct: 185 --------DIGFVGDAG-WLVGEFGALMRTTDGGSTWTPVSTPNK---VSLMGVAFRDAR 232
Query: 276 EAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
A G +G LL T +GG +W + A + YSV + ++ + V+G+ GV+
Sbjct: 233 HGVAVGLAGTLLVTADGGASWRQVPAFTR--EHFYSVMW-DDGRWLVVGDKGVM 283
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 27/198 (13%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWI-VGKPAILLHTSDAG 192
G ++ ++DGG +WA ++ D N I+ G I VG +++ T+D G
Sbjct: 73 GAGGKIVRSEDGGNSWARQT----SGTDVN--LQGIAAWDSAGAIAVGNDGVVIVTADGG 126
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
SW S+ LP N+ RI N G W + G + S G T
Sbjct: 127 HSWT----SAALPAS----SNPNKLFRVRIAN------GVAWAVGEFGAVLRSDDRGATW 172
Query: 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSV 312
+P + R + D+G+ D W G G L++TT+GG TW + + +L V
Sbjct: 173 S-RVLPEEDRAWN--DIGFVG-DAGWLVGEFGALMRTTDGGSTWTPVSTPNKV--SLMGV 226
Query: 313 KFINEKKGFVLGNDGVLL 330
F + + G +G G LL
Sbjct: 227 AFRDARHGVAVGLAGTLL 244
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 235 LLVRGG----GLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTT 290
L++ GG GLF+ K + ++ E ++ R V WAAG G ++++
Sbjct: 25 LVIVGGLLYAGLFV-KAEAVVQKVEPPAIERRDT-FYGVAASDDRVIWAAGAGGKIVRSE 82
Query: 291 NGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+GG +W R+ + ++ NL + + +GNDGV++
Sbjct: 83 DGGNSWARQTSGTDV--NLQGIAAWDSAGAIAVGNDGVVI 120
>gi|327404095|ref|YP_004344933.1| hypothetical protein Fluta_2109 [Fluviicola taffensis DSM 16823]
gi|327319603|gb|AEA44095.1| hypothetical protein Fluta_2109 [Fluviicola taffensis DSM 16823]
Length = 395
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 109/242 (45%), Gaps = 37/242 (15%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
+++++ + ++P++ GV A + + G ++G + +T + G TW+ S ++ +
Sbjct: 13 SMNSFTQTFLPLNSGVSTQLNAISFSNQSMGIVVGNSGVIRKTSNAGLTWSASSSGTSVD 72
Query: 160 EDFNYRFNSISFKGKEGWI-VGKPAILLHTSDAGESWERIPLSSQLPGDM--AFWQPHNR 216
++F +I +GK +L T++AG SW + SS D+ F
Sbjct: 73 ------LTDVTFIDATTFIAIGKLGTILKTTNAGGSWTAV--SSNTNNDLLGVF------ 118
Query: 217 AVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDE 276
A R+ G A+G + + GG + + +G + +V + S+
Sbjct: 119 ANGSRVYISG--ANGIVLASINGGNAWTTVNSGTSFHLNKVY------------FVSEFV 164
Query: 277 AWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG-----NDGVLLQ 331
+A G G +LKT NGG+ W + +N + L SV FI++ G G N+ V+L+
Sbjct: 165 GFAVGDGGTILKTNNGGQAWNFLTSGNNTHS-LRSVYFIDDNVGVATGGIVGSNESVILR 223
Query: 332 YL 333
L
Sbjct: 224 TL 225
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 27/185 (14%)
Query: 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGK 174
V L D+ F+ D +G T+L+T + G +W +A + N + G
Sbjct: 71 VDLTDVTFI--DATTFIAIGKLGTILKTTNAGGSW------TAVSSNTNNDLLGVFANGS 122
Query: 175 EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
+I G I+L + + G +W + + + ++ A DGG
Sbjct: 123 RVYISGANGIVLASINGGNAWTTVNSGTSFHLNKVYFVSEFVGFAV--------GDGGTI 174
Query: 235 LLVRGGGL---FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTN 291
L GG FL+ G T V G+ G +E+ V+L+T N
Sbjct: 175 LKTNNGGQAWNFLTSGNN-THSLRSVYFIDDNVGVATGGIVGSNES-------VILRTLN 226
Query: 292 GGKTW 296
GG+TW
Sbjct: 227 GGQTW 231
>gi|71737180|ref|YP_275734.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|416017802|ref|ZP_11564839.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|416025811|ref|ZP_11569459.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|71557733|gb|AAZ36944.1| BNR/Asp-box repeat protein [Pseudomonas syringae pv. phaseolicola
1448A]
gi|320323275|gb|EFW79363.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329694|gb|EFW85683.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 349
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLDI F DL+ GF +G LL T DGG+ W
Sbjct: 119 QILASNDGGKSWSKQFEDLKREAPLLDIWF--KDLDTGFAVGAYGALLSTVDGGQHWEDV 176
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y NSI+ G +IVG+ + +SD G++WE++ P L G +
Sbjct: 177 S-ERLDNED-QYHLNSIAQVKDAGLFIVGEAGSMFRSSDQGQTWEKLEGPYQGSLFGVIG 234
Query: 210 FWQP 213
QP
Sbjct: 235 TAQP 238
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
++ G +VG +L + D G++W R+P L + H AV Q +
Sbjct: 63 VAHAGARLVVVGDHGHILFSDDQGKTWSQARVPTRQLLTAVFFVDEQHGWAVGHDAQILA 122
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W +++FE++ ++ +LD+ ++ D +A G G L
Sbjct: 123 SNDGGKSW----------------SKQFEDLKREAP---LLDIWFKDLDTGFAVGAYGAL 163
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L T +GG+ W + E+ + +L S+ + + F++G G + +
Sbjct: 164 LSTVDGGQHWEDVSERLDNEDQYHLNSIAQVKDAGLFIVGEAGSMFR 210
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L ++G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 59 LLLDVAHAGARL---VVVGDHGHILFSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 109
Query: 176 -GWIVGKPAILLHTSDAGESWERI--PLSSQLP--------GDMAF-------------W 211
GW VG A +L ++D G+SW + L + P D F
Sbjct: 110 HGWAVGHDAQILASNDGGKSWSKQFEDLKREAPLLDIWFKDLDTGFAVGAYGALLSTVDG 169
Query: 212 QPHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
H V+ R+ N + D GL+++ G +F S G T E E P Q
Sbjct: 170 GQHWEDVSERLDNEDQYHLNSIAQVKDAGLFIVGEAGSMFRSSDQGQTWEKLEGPYQGSL 229
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ +G A G G L ++++ G +W I K A + L S + +
Sbjct: 230 FGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPVEFGLASATLLADGSL 287
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 288 VLVGNGGSVMR 298
>gi|56478709|ref|YP_160298.1| hypothetical protein ebA5764 [Aromatoleum aromaticum EbN1]
gi|56314752|emb|CAI09397.1| conserved hypothetical protein, BNR domain protein [Aromatoleum
aromaticum EbN1]
Length = 351
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 133 LGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
+G R T+L + DGGKTW S+PS + ++ F K GW VG ++LH+ D
Sbjct: 46 VGPRGTVLLSDDGGKTWRQAGSVPS------SVALTAVCFVNDKLGWAVGHSGVVLHSRD 99
Query: 191 AGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
GE+W R QL G A + A A ++ G G L +
Sbjct: 100 GGETWVR-----QLDGRQAAQRVLEEAEA--LEATGR----------EGAERLLRDAQRM 142
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
E+ + P +L V + ++ +A G G+ L T +GG++W
Sbjct: 143 VEDGPDKP-------LLSVSFTNERRGYAVGAYGLALATEDGGQSW 181
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 89/217 (41%), Gaps = 53/217 (24%)
Query: 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW---------APRSIPSAE------- 158
V L + FV D L G+ +G +L ++DGG+TW A R + AE
Sbjct: 72 VALTAVCFVNDKL--GWAVGHSGVVLHSRDGGETWVRQLDGRQAAQRVLEEAEALEATGR 129
Query: 159 --------------EEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQ 203
E+ + S+SF + G+ VG + L T D G+SW+ ++
Sbjct: 130 EGAERLLRDAQRMVEDGPDKPLLSVSFTNERRGYAVGAYGLALATEDGGQSWQ--AFMAR 187
Query: 204 LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKGTGITEEFEEVPVQS 261
LP P + + + RADG LLV G G LF S G++ P
Sbjct: 188 LP------NPRGKHLYQ------IRADGAR-LLVSGEQGALFRSDDAGLSFAEVRTPYPG 234
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
FG L + ++D A G G + ++ +GG W +
Sbjct: 235 TFFGALSL---AEDTVLAYGLRGNVWRSGDGGTAWTQ 268
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
R+ D + G G +L + +GGKTW R+ + + L +V F+N+K G+ +G+ GV+L
Sbjct: 38 RAGDRLVSVGPRGTVLLSDDGGKTW-RQAGSVPSSVALTAVCFVNDKLGWAVGHSGVVLH 96
>gi|289679326|ref|ZP_06500216.1| BNR repeat-containing glycosyl hydrolase, partial [Pseudomonas
syringae pv. syringae FF5]
Length = 268
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 30/240 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F D+ HG+ +G +L + DGGKTW +
Sbjct: 53 SDDQGNTWSQARVPTRQ---LLTAVFFVDE-QHGWAVGHDAQVLASSDGGKTW------N 102
Query: 157 AEEEDFNYR--FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + FK + G +G +LL T+D G+ WE + S +L + Q
Sbjct: 103 KQFEDLKREAPLLDVWFKDLDNGLAIGAYGLLLSTADGGQHWEDV--SDRLDNED---QY 157
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H +A+ D GL+++ G +F S+ G T E P Q FG+ +G
Sbjct: 158 HLNGIAQ-------VKDAGLFIVGEAGSMFRSRDEGRTWEKIAGPYQGSLFGV--IGTAQ 208
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++++ G +W I K A + L S + + ++GN G +L
Sbjct: 209 PSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASATLLADDSLVLVGNGGRVL 268
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 23/158 (14%)
Query: 178 IVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
+VG +L + D G +W R+P L + H AV Q + G W
Sbjct: 43 VVGDHGHILLSDDQGNTWSQARVPTRQLLTAVFFVDEQHGWAVGHDAQVLASSDGGKTW- 101
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
++FE++ ++ +LDV ++ D A G G+LL T +GG+
Sbjct: 102 ---------------NKQFEDLKREAP---LLDVWFKDLDNGLAIGAYGLLLSTADGGQH 143
Query: 296 W--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W + ++ + +L + + + F++G G + +
Sbjct: 144 WEDVSDRLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFR 181
>gi|170735350|ref|YP_001774464.1| glycosyl hydrolase [Burkholderia cenocepacia MC0-3]
gi|169821388|gb|ACA95969.1| glycosyl hydrolase [Burkholderia cenocepacia MC0-3]
Length = 354
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 35/202 (17%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK-GKEGWIVGKPAILLHTSDA 191
+G R +L + D W S+P + + +++FK +GW VG +LHT+D
Sbjct: 58 VGPRGVILFSDDDAANWRQASVPVSSD------LVAVTFKSATQGWAVGHDGEVLHTADG 111
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G +W R QL G+ A A+ + + + G L S+
Sbjct: 112 GSTWVR-----QLDGEQA---------AKLMTDYYAQQQG------DSAALKASR----- 146
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR--EKAADNIAANL 309
EE + G LDV + + W G ++ T +GG++W+ ++ + A NL
Sbjct: 147 EEAQRFVADGGGRPFLDVWFDDEHSGWVVGSFNIIFHTEDGGRSWVPWFDRVDNPEALNL 206
Query: 310 YSVKFINEKKGFVLGNDGVLLQ 331
++++ I +++G G+LL+
Sbjct: 207 HAMRRIGGTL-YIVGEQGLLLK 227
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 89/234 (38%), Gaps = 55/234 (23%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR---- 152
S++ + W + +PV +V A G+ +G +L T DGG TW +
Sbjct: 67 SDDDAANWRQASVPVSSDLV----AVTFKSATQGWAVGHDGEVLHTADGGSTWVRQLDGE 122
Query: 153 ------------------SIPSAEEEDFNYR-------FNSISFKGKE-GWIVGKPAILL 186
++ ++ EE + F + F + GW+VG I+
Sbjct: 123 QAAKLMTDYYAQQQGDSAALKASREEAQRFVADGGGRPFLDVWFDDEHSGWVVGSFNIIF 182
Query: 187 HTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK 246
HT D G SW +P ++ A N RRI GG +V GL L K
Sbjct: 183 HTEDGGRSW--VPWFDRVDNPEAL----NLHAMRRI--------GGTLYIVGEQGLLL-K 227
Query: 247 GTGITEEFEEVPVQSRG--FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
+ F V S+G FG+ G + A G G ++T+GG TW +
Sbjct: 228 LDPDRKRFVAVSSPSKGSLFGLASAG----NAMIAYGLLGNAYRSTDGGATWTK 277
>gi|398839186|ref|ZP_10596435.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM102]
gi|398113185|gb|EJM03034.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM102]
Length = 341
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 252 EEFEE---VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAAN 308
E+F + VPVQS + V + WA G GV+L +T+GG+TW + AD
Sbjct: 71 EQFRQARSVPVQSL---LTSVQFIDAQHGWAVGHDGVVLTSTDGGETWSLLRKADTAGEV 127
Query: 309 LYSVKFINEKKGFVLGNDGVLLQYL 333
L SV F++ GF +G G+ L+ L
Sbjct: 128 LLSVNFLDAHHGFAVGQFGLALESL 152
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI-SFK 172
G VLL + F+ D +HGF +G LE+ DGG++W P S+ +D FN + S
Sbjct: 125 GEVLLSVNFL--DAHHGFAVGQFGLALESLDGGRSWQPSSLAEV-LDDPGMHFNGVTSTA 181
Query: 173 GKEGWIVGKPAILLHTSDAGESWER 197
+ +V + I + +++ G++W+R
Sbjct: 182 SGKVLVVAENGISVFSANRGQTWQR 206
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDFNYRFN 167
+PV +L + F+ D HG+ +G +L + DGG+TW+ R +A E + F
Sbjct: 79 VPVQS--LLTSVQFI--DAQHGWAVGHDGVVLTSTDGGETWSLLRKADTAGEVLLSVNF- 133
Query: 168 SISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQL--PG 206
G+ VG+ + L + D G SW+ L+ L PG
Sbjct: 134 ---LDAHHGFAVGQFGLALESLDGGRSWQPSSLAEVLDDPG 171
>gi|431927064|ref|YP_007240098.1| photosystem II stability/assembly factor-like protein [Pseudomonas
stutzeri RCH2]
gi|431825351|gb|AGA86468.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas stutzeri RCH2]
Length = 363
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 23/201 (11%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ ++W + +P +L I F+ D HG+ +G +L T DGG++WA +
Sbjct: 94 SDDEGTSWTQAKVPTRQ--LLTAIDFI--DAKHGWAVGHDALVLATADGGESWAVQY--- 146
Query: 157 AEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
EE + + F+ + G VG L+ T D G+SW+ I S +L + F H
Sbjct: 147 -EEREREAPLLDVWFEDTQHGIAVGAYGALIETIDGGQSWDDI--SERLDNEDGF---HL 200
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+ I+ GL+++ GG+F S G T E + P + FG+ VG
Sbjct: 201 NAIT-HIEGS------GLFVVGEMGGMFRSADMGETWERVDSPYKGSFFGV--VGGSEPG 251
Query: 276 EAWAAGGSGVLLKTTNGGKTW 296
A G G L ++T+ G +W
Sbjct: 252 VVIAFGLRGHLFRSTDFGDSW 272
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
+LLDI D + G R +L + D G +W +P+ + +I F K
Sbjct: 71 LLLDITQAGDRI---VAAGDRGHILYSDDEGTSWTQAKVPTRQ------LLTAIDFIDAK 121
Query: 175 EGWIVGKPAILLHTSDAGESW 195
GW VG A++L T+D GESW
Sbjct: 122 HGWAVGHDALVLATADGGESW 142
>gi|398879827|ref|ZP_10634909.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM67]
gi|398884553|ref|ZP_10639484.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM60]
gi|398194111|gb|EJM81193.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM60]
gi|398195277|gb|EJM82326.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM67]
Length = 357
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 26/239 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P +L + FV D HG+ +G +L ++DGG TW +
Sbjct: 84 SDDQGATWTQAKVPTR--ALLTSVYFVDD--KHGWAVGHDAQILASEDGGVTWTKQYEDL 139
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + F S G+ VG L+ T+D G++WE S +L + Q H
Sbjct: 140 KRESPLLDVWFQDAS----NGFAVGAYGALVATTDGGKTWE--DASDRLDNED---QYHL 190
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A D GL+++ G +F S G T E E P + FG+ +G +
Sbjct: 191 NAIAA-------IKDAGLFIVGEQGSMFRSSDWGQTWEKLEGPYEGSLFGV--IGTAEAN 241
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G L ++T+ G TW + KA + L +++ ++GN G +++
Sbjct: 242 TLLAYGLRGNLFRSTDFGTTWEPVELKATRGALEFGLSGATLLDDGSIVIVGNGGSVIR 300
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + Y + LLD+ F D ++GF +G L+ T DGGKTW
Sbjct: 121 QILASEDGGVTWTKQYEDLKRESPLLDVWF--QDASNGFAVGAYGALVATTDGGKTWEDA 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI 198
S + ED Y N+I+ G +IVG+ + +SD G++WE++
Sbjct: 179 S-DRLDNED-QYHLNAIAAIKDAGLFIVGEQGSMFRSSDWGQTWEKL 223
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 27/169 (15%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P + L H AV Q +
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGATWTQAKVPTRALLTSVYFVDDKHGWAVGHDAQILA 124
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T+++E++ +S +LDV ++ +A G G L
Sbjct: 125 SEDGGVTW----------------TKQYEDLKRESP---LLDVWFQDASNGFAVGAYGAL 165
Query: 287 LKTTNGGKTWIREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
+ TT+GGKTW E A+D + +L ++ I + F++G G + +
Sbjct: 166 VATTDGGKTW--EDASDRLDNEDQYHLNAIAAIKDAGLFIVGEQGSMFR 212
>gi|431801509|ref|YP_007228412.1| hypothetical protein B479_07765 [Pseudomonas putida HB3267]
gi|430792274|gb|AGA72469.1| hypothetical protein B479_07765 [Pseudomonas putida HB3267]
Length = 339
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 36/244 (14%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA------ 150
S++ W + +P LL F DD G+ +G +L + DGG TW+
Sbjct: 71 SDDQGRTWTQARVPTRQ---LLTAVFFLDD-KRGWAVGHDALVLASSDGGATWSKQFEDL 126
Query: 151 PRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAF 210
PR P + + G+ VG LL T+D G+ W+ + P
Sbjct: 127 PREAP---------LLDVAFLDARHGFAVGAYGALLETTDGGQHWQDVAERLDNPD---- 173
Query: 211 WQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVG 270
Q H +A+ D GL+++ GG+F S G T + P + FG+ +G
Sbjct: 174 -QLHLNGIAQ-------VRDAGLFIVGEQGGMFRSADNGQTWAKVQGPYEGSLFGV--IG 223
Query: 271 YRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDG 327
A G G L ++T+ G +W I KAA + L + + ++GN G
Sbjct: 224 TAQPRTLLAYGLRGNLFRSTDFGDSWQPIELKAARGTLEFGLAGATLVEDGSLVLVGNGG 283
Query: 328 VLLQ 331
+L+
Sbjct: 284 SVLR 287
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 28/216 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S + + W + + + LLD+AF+ D HGF +G LLET DGG+ W + +
Sbjct: 112 SSDGGATWSKQFEDLPREAPLLDVAFL--DARHGFAVGAYGALLETTDGGQHW--QDVAE 167
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
+ N I+ G +IVG+ + ++D G++W ++ P L G + QP
Sbjct: 168 RLDNPDQLHLNGIAQVRDAGLFIVGEQGGMFRSADNGQTWAKVQGPYEGSLFGVIGTAQP 227
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG---FGILDVG 270
R + G R G LF S G + + E+ +RG FG+
Sbjct: 228 ------RTLLAYGLR-----------GNLFRSTDFGDSWQPIELKA-ARGTLEFGLAGAT 269
Query: 271 YRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
G G +L++T+ G+T+ AD IA
Sbjct: 270 LVEDGSLVLVGNGGSVLRSTDDGQTFSVYNRADRIA 305
>gi|148265448|ref|YP_001232154.1| BNR repeat-containing glycosyl hydrolase [Geobacter uraniireducens
Rf4]
gi|146398948|gb|ABQ27581.1| glycosyl hydrolase, BNR repeat-containing protein [Geobacter
uraniireducens Rf4]
Length = 352
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 173 GKEGWIVGKP----AILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAV--ARRIQNMG 226
G GW VGKP ++LHT+D G +W R +++P N + + N+
Sbjct: 32 GPVGWAVGKPDAGYGVILHTTDGGRTWVRQGSPAEIP---------NVEIDDVTAVDNLT 82
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
A GG L G L+ S G G T + VP + G + + S EAWA G GV+
Sbjct: 83 AWAVGGAENL--GVILYTSDG-GRTWNRQTVPPDA-GKELSGIKAVSPSEAWACGSGGVI 138
Query: 287 LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDG 327
L TT+ G+TW+++ +N + + +V+G+ G
Sbjct: 139 LHTTDAGRTWVKQNTPAIPPSNFQRLDAVGSGAVWVVGDKG 179
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 101/258 (39%), Gaps = 52/258 (20%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W R +P D G L I V + + G+ +L T D G+TW ++ P+ +F
Sbjct: 105 WNRQTVPPDAGKELSGIKAV--SPSEAWACGSGGVILHTTDAGRTWVKQNTPAIPPSNFQ 162
Query: 164 YRFNSISFKGKEGWIVGKPA-----ILLHTSDAGESWER-----------------IPLS 201
R +++ W+VG ++ +++D G W R P+S
Sbjct: 163 -RLDAVGSGAV--WVVGDKGGTDYPVVEYSTDRGAHWTRQGGPGIFSDHLIDVSALSPIS 219
Query: 202 SQLPGDMAFWQPHNRAVARRIQNMGWR---------ADG-------GLWLLVRGGGLFLS 245
+ G P + V R + W A+G +W++ G+ +
Sbjct: 220 AWAVGGTPL-NPPGQVVCRTLDGSTWTQVISLDPGDANGVCAVNSSTVWVVTDFDGIHKT 278
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS----GVLLKTTNGGKTWIREKA 301
G T + VP GF +L V + +AW GG G++L TT+GG TW +
Sbjct: 279 TDGGATWTKQTVP--RTGFYLLGVTATDERQAWVVGGGTENRGIILHTTDGGATWTEQ-- 334
Query: 302 ADNIAANLYSVKFINEKK 319
A A L V F+ ++
Sbjct: 335 AFPTEAWLRRVSFVGARR 352
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 37/240 (15%)
Query: 104 WERVYIPVD-PGVVLLDIAFVPDDLNHGFLLGTRQ--TLLETKDGGKTWAPRSIPSAEEE 160
W R P + P V + D+ V D+L + G +L T DGG+TW +++P
Sbjct: 58 WVRQGSPAEIPNVEIDDVTAV-DNLTAWAVGGAENLGVILYTSDGGRTWNRQTVP----P 112
Query: 161 DFNYRFNSI-SFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVA 219
D + I + E W G ++LHT+DAG +W + + P +
Sbjct: 113 DAGKELSGIKAVSPSEAWACGSGGVILHTTDAGRTWVKQNTPAIPPSNF----------- 161
Query: 220 RRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGI-----LDVGYRSQ 274
+R+ +G G +W++ GG T+ Q G GI +DV S
Sbjct: 162 QRLDAVG---SGAVWVVGDKGGTDYPVVEYSTDRGAHWTRQG-GPGIFSDHLIDVSALSP 217
Query: 275 DEAWAAGGS-----GVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN-DGV 328
AWA GG+ G ++ T G TW + + D AN V +N +V+ + DG+
Sbjct: 218 ISAWAVGGTPLNPPGQVVCRTLDGSTWTQVISLDPGDAN--GVCAVNSSTVWVVTDFDGI 275
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 266 ILDVGYRSQDEAWAAGGS---GVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFV 322
I DV AWA GG+ GV+L T++GG+TW R+ + L +K ++ + +
Sbjct: 72 IDDVTAVDNLTAWAVGGAENLGVILYTSDGGRTWNRQTVPPDAGKELSGIKAVSPSEAWA 131
Query: 323 LGNDGVLLQ 331
G+ GV+L
Sbjct: 132 CGSGGVILH 140
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 139 LLETKDGGKTW----APRSIPSAEEEDFNYRFNSISFKGKEGWIVGKP---AILLHTSDA 191
+L T DGG+TW +P IP+ E +D N + W VG ++L+TSD
Sbjct: 48 ILHTTDGGRTWVRQGSPAEIPNVEIDDVTAVDNLTA------WAVGGAENLGVILYTSDG 101
Query: 192 GESWER 197
G +W R
Sbjct: 102 GRTWNR 107
>gi|209515569|ref|ZP_03264434.1| glycosyl hydrolase [Burkholderia sp. H160]
gi|209504036|gb|EEA04027.1| glycosyl hydrolase [Burkholderia sp. H160]
Length = 354
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 35/202 (17%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
+G R +L + DG W R +P+ D +++FK GW VG +LHT+D
Sbjct: 58 VGPRGAILVSDDGAMHW--RQVPAPVSSDLV----AVTFKSAVLGWAVGHDGEVLHTTDG 111
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G +W R QL G A A+ + + G L S+
Sbjct: 112 GNTWMR-----QLDGQEA---------AKLMSEYYAKQQG------DSPDLKASR----- 146
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR--EKAADNIAANL 309
EE E G LDV + + W G ++ T +GGK W+ ++ + A NL
Sbjct: 147 EEAERFEADQGGRPFLDVWFDDERSGWVIGSFNIIFHTEDGGKRWVPWFDRVDNPNALNL 206
Query: 310 YSVKFINEKKGFVLGNDGVLLQ 331
++++ IN ++ G G+LL+
Sbjct: 207 HAMRRINGTL-YIAGEQGLLLK 227
>gi|28870933|ref|NP_793552.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28854182|gb|AAO57247.1| BNR/Asp-box repeat protein [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 340
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DLN+GF +G LL T DGG+ W +
Sbjct: 110 QILASSDGGKSWNKQFEDLKREAPLLDVWF--KDLNNGFAIGAYGALLNTGDGGRHW--Q 165
Query: 153 SIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
+ + + Y N I+ K +IVG+ + + D G++WE++ P L G +
Sbjct: 166 DVSDRLDNEDQYHLNGIAQIKDAGLFIVGEAGSMFRSRDEGQTWEKLEGPYQGSLFGVVG 225
Query: 210 FWQP 213
QP
Sbjct: 226 TAQP 229
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 105/251 (41%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L +G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 50 LLLDVAHAGARL---VAVGDHGHILYSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 100
Query: 176 -GWIVGKPAILLHTSDAGESWERI--PLSSQLP-GDMAFWQPHN---------------- 215
GW VG A +L +SD G+SW + L + P D+ F +N
Sbjct: 101 HGWAVGHDAQILASSDGGKSWNKQFEDLKREAPLLDVWFKDLNNGFAIGAYGALLNTGDG 160
Query: 216 ----RAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
+ V+ R+ N + D GL+++ G +F S+ G T E E P Q
Sbjct: 161 GRHWQDVSDRLDNEDQYHLNGIAQIKDAGLFIVGEAGSMFRSRDEGQTWEKLEGPYQGSL 220
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ VG A G G L ++++ G TW I A + L S + +
Sbjct: 221 FGV--VGTAQPATLLAYGLRGNLFRSSDFGDTWQPIELNGARGPVEFGLASATLLTDGTL 278
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 279 VLVGNGGSVMR 289
>gi|424923602|ref|ZP_18346963.1| hypothetical protein I1A_003055 [Pseudomonas fluorescens R124]
gi|404304762|gb|EJZ58724.1| hypothetical protein I1A_003055 [Pseudomonas fluorescens R124]
Length = 347
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + + + LLD+ F ++NHG +G LLET DGGK W
Sbjct: 113 QILASEDGGLTWSKQFEDLKREAPLLDVWF--QNVNHGVAVGAYGALLETTDGGKNWQDV 170
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S ++ F+ N+I+ G +IVG+ + + D G++WE++ P L G +
Sbjct: 171 SDRLDNQDQFH--LNAIAAVKDAGLFIVGEQGSMFRSPDWGQTWEKLQGPYQGSLFGVIG 228
Query: 210 FWQPH 214
QP
Sbjct: 229 TAQPQ 233
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 104/238 (43%), Gaps = 26/238 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P +L + FV D HG+ +G +L ++DGG TW+ +
Sbjct: 76 SDDQGKTWTQAKVPTRQ--LLTAVYFVDD--KHGWAVGHDAQILASEDGGLTWSKQFEDL 131
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + F +++ G VG LL T+D G++W+ + S +L F H
Sbjct: 132 KREAPLLDVWFQNVN----HGVAVGAYGALLETTDGGKNWQDV--SDRLDNQDQF---HL 182
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A D GL+++ G +F S G T E + P Q FG+ +G
Sbjct: 183 NAIAA-------VKDAGLFIVGEQGSMFRSPDWGQTWEKLQGPYQGSLFGV--IGTAQPQ 233
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++T+ G TW + KAA + L + + ++GN G ++
Sbjct: 234 TLLAYGLRGNLYRSTDFGSTWQQVELKAARGALEFGLSGATLLADGSIVIVGNGGSVI 291
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WL 235
VG +L++ D G++W ++P L H AV Q + DGGL W
Sbjct: 67 VGDRGHILYSDDQGKTWTQAKVPTRQLLTAVYFVDDKHGWAVGHDAQILA-SEDGGLTW- 124
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
+++FE++ ++ +LDV +++ + A G G LL+TT+GGK
Sbjct: 125 ---------------SKQFEDLKREAP---LLDVWFQNVNHGVAVGAYGALLETTDGGKN 166
Query: 296 W--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W + ++ + +L ++ + + F++G G + +
Sbjct: 167 WQDVSDRLDNQDQFHLNAIAAVKDAGLFIVGEQGSMFR 204
>gi|429334257|ref|ZP_19214929.1| BNR/Asp-box repeat-containing protein [Pseudomonas putida CSV86]
gi|428761095|gb|EKX83337.1| BNR/Asp-box repeat-containing protein [Pseudomonas putida CSV86]
Length = 326
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 116/274 (42%), Gaps = 48/274 (17%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
+ A S EA W + D G+ LLD+ L ++G R +L + D GKTW
Sbjct: 15 EAAASPEA-EVWSTLSAKSDKGL-LLDVTRAGARL---VMVGERGHILFSDDQGKTWTQA 69
Query: 153 SIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLP-GDM 208
+P+ + +++F K GW VG A +L +SD G +W + LS + P D+
Sbjct: 70 KVPTRQ------LLTAVTFVDDKHGWAVGHDAQILASSDGGATWSKQYEDLSREAPLLDV 123
Query: 209 AFWQP-HNRAV------------ARRIQNMGWR---------------ADGGLWLLVRGG 240
F P H A+ + Q++G R D GL ++ G
Sbjct: 124 WFENPQHGLAIGAYGAMLETTDGGQNWQDVGDRLDNPDGLHLNGIARVKDAGLVIVGEQG 183
Query: 241 GLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IR 298
L+ S G T E E P + FG+ +G + A G L ++T+ G TW I
Sbjct: 184 SLYRSSDDGQTWEKLESPYEGSFFGV--IGTAQANTLLAYGLRANLYRSTDFGSTWQPIS 241
Query: 299 EKAADN-IAANLYSVKFINEKKGFVLGNDGVLLQ 331
+AA + L S +++ ++GN G +L+
Sbjct: 242 LQAARGPLQFGLASATLLDDGSLVLVGNGGTVLR 275
>gi|398992702|ref|ZP_10695665.1| BNR/Asp-box repeat protein [Pseudomonas sp. GM21]
gi|398136467|gb|EJM25553.1| BNR/Asp-box repeat protein [Pseudomonas sp. GM21]
Length = 376
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 120/279 (43%), Gaps = 57/279 (20%)
Query: 71 FVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIP---VDPG--VVLLDIAFVPD 125
FV + L L+++LA +S+ + + +P VD V LL +A D
Sbjct: 9 FVLSKSRLLLAVALAVGVSAGMTAPAYSAVMSSTDSLDVPALKVDEHLPVPLLSVAKAGD 68
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAI 184
+ +G + + DGGKTW P + + + F+ + GWIVG A+
Sbjct: 69 AM---ISVGLHGLIQRSTDGGKTWQQVDSPVSSD------LVQVRFRDEHNGWIVGHDAL 119
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNM-----GWRADGG---LWLL 236
+LHT+D G +W+ QL G RR+ + G RA+ G L+
Sbjct: 120 VLHTTDGGRNWQ-----VQLDG-------------RRLLKLLNGYYGPRAEKGDESAALV 161
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
++ + ++ T T + P LDV + Q +A G G+LL +T+ G+ W
Sbjct: 162 LK--EVAMAASTSATPDVLAAP-------FLDVMFDKQGNGFAVGAFGLLLHSTDNGENW 212
Query: 297 IR--EKAADNIAANLYSVKFINEKKG--FVLGNDGVLLQ 331
E++ ++ +LY + E G ++ G G+LL+
Sbjct: 213 EPWIERSDNDRRMHLYGLA---EHSGTFYISGEQGLLLR 248
>gi|398995303|ref|ZP_10698189.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM21]
gi|398130183|gb|EJM19529.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM21]
Length = 362
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 90/209 (43%), Gaps = 44/209 (21%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D GK W ++P + + ++++F +EGW VG ++LH+ DA
Sbjct: 60 VGQRGHILYSDDSGKHWQQAAVPVSAD------LSAVNFPSAREGWAVGNDGVVLHSDDA 113
Query: 192 GESWERIPLSSQLP-------GDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
G +W + Q+ G +A QP N +R +
Sbjct: 114 GVTWRKQLDGRQIGELLVKHYGALASAQPDNEEWSR----------------------WA 151
Query: 245 SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADN 304
+G + E+ + P +LDV + ++ + G ++L+T +GG+TW + +
Sbjct: 152 DEGQRLVEQGADKP-------LLDVWFANEQVGYVVGVFNLILRTEDGGQTWTPYQDRTD 204
Query: 305 IAANLYSVKFINEKKG-FVLGNDGVLLQY 332
+ + + G ++ G G+LL++
Sbjct: 205 NPQSFHLNAIASTGDGLYIAGEQGLLLKW 233
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F + + G+++G +L T+DGG+TW P + + F+ N+I+ G
Sbjct: 166 LLDVWFANEQV--GYVVGVFNLILRTEDGGQTWTPYQDRTDNPQSFH--LNAIASTGDGL 221
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAFWQPHNRAVARRIQNMGWR 228
+I G+ +LL DA + + + Q PG++ + + W
Sbjct: 222 YIAGEQGLLLKWDDASQRFAALQTPYQGSFFGVLGKPGEVLVYGLRGNVLRSTDGGQNWT 281
Query: 229 A-DGGL---------------WLLVRGGGLFLSKGTGITEEFEEVPV 259
A D GL L GG + +S+GTG + PV
Sbjct: 282 ALDSGLRISITAGLIDDRGDYRLFTLGGQMLVSQGTGAQLHLVQKPV 328
>gi|70730643|ref|YP_260384.1| BNR/Asp-box repeat domain-containing protein [Pseudomonas protegens
Pf-5]
gi|68344942|gb|AAY92548.1| BNR/Asp-box repeat domain protein [Pseudomonas protegens Pf-5]
Length = 349
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 32/222 (14%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + + W R + + LLD+ F D G+ +G LLET DGG+ W
Sbjct: 120 QVLASSDGGATWTRQFQDLKREAPLLDVWF--KDTQTGYAVGAYGALLETSDGGQHWEDV 177
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S E+ F+ N+I+ G +IVG+ + ++D G++WER+ P L G +
Sbjct: 178 SDRLDNEDQFH--LNAIAQVKDSGLFIVGEQGSMFRSADDGQTWERLEGPYEGSLFGVIG 235
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRG---F 264
QP LLV G G L+ S G T E E+ +RG F
Sbjct: 236 TGQPAT-------------------LLVYGLRGNLYRSTDFGSTWEQVELNA-ARGALEF 275
Query: 265 GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
G+ G G ++++T+ G+T+ AD I+
Sbjct: 276 GLSGATLLDDGSLVIVGNGGSVIRSTDHGQTFSVFNRADRIS 317
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 41/233 (17%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D G+TW +P+ + Y + K GW VG A +L +SD G
Sbjct: 74 VGDRGHILYSDDQGQTWVQAKVPTRQLLTAVYFVDD-----KRGWAVGHDAQVLASSDGG 128
Query: 193 ESWER--IPLSSQLP-GDMAFWQP--------------------HNRAVARRIQN----- 224
+W R L + P D+ F H V+ R+ N
Sbjct: 129 ATWTRQFQDLKREAPLLDVWFKDTQTGYAVGAYGALLETSDGGQHWEDVSDRLDNEDQFH 188
Query: 225 ---MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAG 281
+ D GL+++ G +F S G T E E P + FG++ G + + G
Sbjct: 189 LNAIAQVKDSGLFIVGEQGSMFRSADDGQTWERLEGPYEGSLFGVIGTGQPATLLVY--G 246
Query: 282 GSGVLLKTTNGGKTWIR---EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G L ++T+ G TW + A + L +++ ++GN G +++
Sbjct: 247 LRGNLYRSTDFGSTWEQVELNAARGALEFGLSGATLLDDGSLVIVGNGGSVIR 299
>gi|422596286|ref|ZP_16670568.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330986585|gb|EGH84688.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 349
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DL+ GF +G LL T DGG+ W
Sbjct: 119 QILASNDGGKSWSKQFEDLKREAPLLDVWF--KDLDTGFAVGAYGALLSTVDGGQHWEDV 176
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y NSI+ G +IVG+ + +SD G++WE++ P L G +
Sbjct: 177 S-ERLDNED-QYHLNSIAQVKDAGLFIVGEAGSMFRSSDQGQTWEKLEGPYQGSLFGVIG 234
Query: 210 FWQP 213
QP
Sbjct: 235 TAQP 238
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
++ G +VG +L + D G++W R+P L + H AV Q +
Sbjct: 63 VAHAGARLVVVGDHGHILFSDDQGKTWSQARVPTRQLLTAVFFVDEQHGWAVGHDAQILA 122
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W +++FE++ ++ +LDV ++ D +A G G L
Sbjct: 123 SNDGGKSW----------------SKQFEDLKREAP---LLDVWFKDLDTGFAVGAYGAL 163
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L T +GG+ W + E+ + +L S+ + + F++G G + +
Sbjct: 164 LSTVDGGQHWEDVSERLDNEDQYHLNSIAQVKDAGLFIVGEAGSMFR 210
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L ++G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 59 LLLDVAHAGARL---VVVGDHGHILFSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 109
Query: 176 -GWIVGKPAILLHTSDAGESWERI--PLSSQLP--------GDMAF-------------W 211
GW VG A +L ++D G+SW + L + P D F
Sbjct: 110 HGWAVGHDAQILASNDGGKSWSKQFEDLKREAPLLDVWFKDLDTGFAVGAYGALLSTVDG 169
Query: 212 QPHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
H V+ R+ N + D GL+++ G +F S G T E E P Q
Sbjct: 170 GQHWEDVSERLDNEDQYHLNSIAQVKDAGLFIVGEAGSMFRSSDQGQTWEKLEGPYQGSL 229
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ +G A G G L ++++ G +W I K A + L S + +
Sbjct: 230 FGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPVEFGLASATLLADGSL 287
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 288 VLVGNGGSVMR 298
>gi|407362562|ref|ZP_11109094.1| glycosyl hydrolase [Pseudomonas mandelii JR-1]
Length = 357
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 41/222 (18%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKE 175
L D+A D L +G R +L + D G+ W ++P + + N++SF +
Sbjct: 47 LSDMARAGDRL---VAVGQRGHILYSDDAGQHWQQAAVPVSAD------LNAVSFPSATQ 97
Query: 176 GWIVGKPAILLHTSDAGESWERIPLSSQLPGDM--AFWQPHNRAVAR-RIQNMGWRADGG 232
GW VG ++LH++DAG +W S QL G A H +A+AR N W
Sbjct: 98 GWAVGGDGVVLHSNDAGATW-----SKQLDGREIGALLVKHYQALARAEPGNEQWP---- 148
Query: 233 LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
L +++G + + + P +LDV + + + G ++L+T +G
Sbjct: 149 ---------LRVAEGQRLEAQGADKP-------LLDVWFANDRLGYVVGVFNLILRTEDG 192
Query: 293 GKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
G++W +++ + +L ++ + +++G G+LL++
Sbjct: 193 GQSWTPFQDRTDNPQGFHLNAIAATGDAL-YIVGEQGLLLKW 233
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 32/171 (18%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D L G+++G +L T+DGG++W P + + F+ N+I+ G
Sbjct: 166 LLDVWFANDRL--GYVVGVFNLILRTEDGGQSWTPFQDRTDNPQGFH--LNAIAATGDAL 221
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAFWQPHNRAVARRIQNMGWR 228
+IVG+ +LL DA + + + Q PG++ + + + W
Sbjct: 222 YIVGEQGLLLKWDDAQQRFAALQTPYQGSFFGVVGKPGEVLVYGLRGNVLRSTDAGLSWT 281
Query: 229 ----------------ADGGLWLLVRGGGLFLSKGTGI----TEEFEEVPV 259
A G L +GG + S+GTG ++ + VPV
Sbjct: 282 SLDTGLHVSITAGLVDAHGDYRLFTQGGQMLASQGTGAQQRWVQQAQPVPV 332
>gi|330826408|ref|YP_004389711.1| glycosyl hydrolase [Alicycliphilus denitrificans K601]
gi|329311780|gb|AEB86195.1| glycosyl hydrolase [Alicycliphilus denitrificans K601]
Length = 357
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 32/203 (15%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D GKTW ++P + + ++ F ++GW VG ++LH+ DA
Sbjct: 58 VGQRGHILFSDDAGKTWQQAAVPVSSD------LVAVHFPSAQKGWAVGHDGVILHSQDA 111
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLF-LSKGTGI 250
G++W + QL G MA G R L G L + +
Sbjct: 112 GKTWVK-----QLDGRMA----------------GQRMPAYYAQLAASGALGPADESAKL 150
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR--EKAADNIAAN 308
+E + Q LDV + + +A G ++ +T +GG++W + + +
Sbjct: 151 LDEVNRIAGQGAENPFLDVWFADEKTGFAVGAFNLIFRTQDGGQSWEPWFHRTVNPNRLH 210
Query: 309 LYSVKFINEKKGFVLGNDGVLLQ 331
LY+V+ + F++G G++L+
Sbjct: 211 LYAVRQM-AAGWFIVGEQGLVLK 232
>gi|378951549|ref|YP_005209037.1| bnr asp-box repeat-containing protein [Pseudomonas fluorescens
F113]
gi|359761563|gb|AEV63642.1| bnr asp-box repeat-containing protein [Pseudomonas fluorescens
F113]
Length = 345
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 20/217 (9%)
Query: 7 LSEPMMLVKPSLSSLF-------APRLNRTNAQAQQPRFISTSRACSLPSSDSSSSSSSS 59
LS P+M V S S + A + + R ++ + SD +S +
Sbjct: 29 LSAPVMAVAASTSDVIYSVESAKASKTLMLDVVHAGQRLVAVGDRGHIVYSDDQGTSWTQ 88
Query: 60 SSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLD 119
+ + RQ + TA + G Q S++ S W + + + LLD
Sbjct: 89 AKVPT----RQLL--TAVFFVDDKHGWAVGHDAQILASDDGGSTWTKQFEDLTRESPLLD 142
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG-WI 178
+ F D +GF +G LL+T DGGK W S E+ F+ N+I+ G +I
Sbjct: 143 VWF--KDPGNGFAVGAYGALLQTTDGGKHWEDASDRLDNEDQFH--LNAIAAVKDAGLFI 198
Query: 179 VGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
VG+ + ++D G++WE++ P L G + QP
Sbjct: 199 VGEAGSMFRSADWGQTWEKVEGPYEGSLFGVIGTAQP 235
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 27/159 (16%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
VG ++++ D G SW ++P L H AV Q + G W
Sbjct: 70 VGDRGHIVYSDDQGTSWTQAKVPTRQLLTAVFFVDDKHGWAVGHDAQILASDDGGSTW-- 127
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
T++FE++ +S +LDV ++ +A G G LL+TT+GGK W
Sbjct: 128 --------------TKQFEDLTRESP---LLDVWFKDPGNGFAVGAYGALLQTTDGGKHW 170
Query: 297 IREKAADNIAA----NLYSVKFINEKKGFVLGNDGVLLQ 331
E A+D + +L ++ + + F++G G + +
Sbjct: 171 --EDASDRLDNEDQFHLNAIAAVKDAGLFIVGEAGSMFR 207
>gi|339486532|ref|YP_004701060.1| hypothetical protein PPS_1605 [Pseudomonas putida S16]
gi|338837375|gb|AEJ12180.1| conserved hypothetical protein [Pseudomonas putida S16]
Length = 339
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 30/241 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P LL F DD G+ +G +L + DGG TW S
Sbjct: 71 SDDQGRTWTQARVPTRQ---LLTAVFFLDD-KRGWAVGHDALVLASSDGGATW------S 120
Query: 157 AEEEDFNYR---FNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + + G+ VG LL T+D G+ W+ + P Q
Sbjct: 121 KQFEDLTREAPLLDVAFLDARHGFAVGAYGALLETTDGGQHWQDVAERLDNPD-----QL 175
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H +A+ D GL+++ GG+F S G T + P + FG+ +G
Sbjct: 176 HLNGIAQ-------VRDAGLFIVGEQGGMFRSADNGQTWAKVQGPYEGSLFGV--IGTAQ 226
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++T+ G +W I KAA + L + + ++GN G +L
Sbjct: 227 PRTLLAYGLRGNLFRSTDFGDSWQPIELKAARGTLEFGLAGATLVEDGSLVLVGNGGSVL 286
Query: 331 Q 331
+
Sbjct: 287 R 287
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 28/216 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S + + W + + + LLD+AF+ D HGF +G LLET DGG+ W + +
Sbjct: 112 SSDGGATWSKQFEDLTREAPLLDVAFL--DARHGFAVGAYGALLETTDGGQHW--QDVAE 167
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
+ N I+ G +IVG+ + ++D G++W ++ P L G + QP
Sbjct: 168 RLDNPDQLHLNGIAQVRDAGLFIVGEQGGMFRSADNGQTWAKVQGPYEGSLFGVIGTAQP 227
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG---FGILDVG 270
R + G R G LF S G + + E+ +RG FG+
Sbjct: 228 ------RTLLAYGLR-----------GNLFRSTDFGDSWQPIELKA-ARGTLEFGLAGAT 269
Query: 271 YRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
G G +L++T+ G+T+ AD IA
Sbjct: 270 LVEDGSLVLVGNGGSVLRSTDDGQTFSVYNRADRIA 305
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 240 GGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIRE 299
G + S G T VP + + V + WA G ++L +++GG TW ++
Sbjct: 66 GHILFSDDQGRTWTQARVPTRQL---LTAVFFLDDKRGWAVGHDALVLASSDGGATWSKQ 122
Query: 300 KAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
A L V F++ + GF +G G LL+
Sbjct: 123 FEDLTREAPLLDVAFLDARHGFAVGAYGALLE 154
>gi|409199817|ref|ZP_11228020.1| hypothetical protein PflaJ_00708 [Pseudoalteromonas flavipulchra
JG1]
Length = 334
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI 315
EVP+QS + V ++ +D WA G ++KTT+GGKTW ++ + ++FI
Sbjct: 73 EVPIQSL---LTSVTFKGKDIGWACGHDASIIKTTDGGKTWALKQYIPTLEKPCLDIEFI 129
Query: 316 NEKKGFVLGNDGVLLQ 331
+++ GF +G G+ +
Sbjct: 130 DQQHGFAVGAYGMFFE 145
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS-IPSAEEEDF 162
W + +P+ +L + F D+ G+ G ++++T DGGKTWA + IP+ E+
Sbjct: 69 WTQAEVPIQS--LLTSVTFKGKDI--GWACGHDASIIKTTDGGKTWALKQYIPTLEKPCL 124
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQL-PGDMAF 210
+ F + G+ VG + T+D GESW + +S + P D+ +
Sbjct: 125 DIEF----IDQQHGFAVGAYGMFFETTDGGESWTKRFISEFVHPDDVDY 169
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 29/116 (25%)
Query: 106 RVYIPV--DPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI--------- 154
+ YIP P LDI F+ D HGF +G ET DGG++W R I
Sbjct: 113 KQYIPTLEKP---CLDIEFI--DQQHGFAVGAYGMFFETTDGGESWTKRFISEFVHPDDV 167
Query: 155 ----------PSAEEEDFNY---RFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
P+A E++ + FN + ++ G+ ++ + D G++W++
Sbjct: 168 DYLADLKEQDPAAYEQETAFILPHFNRLLIAEGTMYLAGEMGLVAQSDDLGKTWQK 223
>gi|421530684|ref|ZP_15977149.1| hypothetical protein PPS11_37305 [Pseudomonas putida S11]
gi|402211802|gb|EJT83234.1| hypothetical protein PPS11_37305 [Pseudomonas putida S11]
Length = 328
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 30/241 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P LL F DD G+ +G +L + DGG TW S
Sbjct: 60 SDDQGRTWTQARVPTRQ---LLTAVFFLDD-KRGWAVGHDALVLASSDGGATW------S 109
Query: 157 AEEEDFNYR---FNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + + G+ VG LL T+D G+ W+ + P Q
Sbjct: 110 KQFEDLTREAPLLDVAFLDARHGFAVGAYGALLETTDGGQHWQDVAERLDNPD-----QL 164
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H +A+ D GL+++ GG+F S G T + P + FG+ +G
Sbjct: 165 HLNGIAQ-------VRDAGLFIVGEQGGMFRSADNGQTWAKVQGPYEGSLFGV--IGTAQ 215
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++T+ G +W I KAA + L + + ++GN G +L
Sbjct: 216 PRTLLAYGLRGNLFRSTDFGDSWQPIELKAARGTLEFGLAGATLVEDGSLVLVGNGGSVL 275
Query: 331 Q 331
+
Sbjct: 276 R 276
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 28/216 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S + + W + + + LLD+AF+ D HGF +G LLET DGG+ W + +
Sbjct: 101 SSDGGATWSKQFEDLTREAPLLDVAFL--DARHGFAVGAYGALLETTDGGQHW--QDVAE 156
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
+ N I+ G +IVG+ + ++D G++W ++ P L G + QP
Sbjct: 157 RLDNPDQLHLNGIAQVRDAGLFIVGEQGGMFRSADNGQTWAKVQGPYEGSLFGVIGTAQP 216
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG---FGILDVG 270
R + G R G LF S G + + E+ +RG FG+
Sbjct: 217 ------RTLLAYGLR-----------GNLFRSTDFGDSWQPIELKA-ARGTLEFGLAGAT 258
Query: 271 YRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
G G +L++T+ G+T+ AD IA
Sbjct: 259 LVEDGSLVLVGNGGSVLRSTDDGQTFSVYNRADRIA 294
>gi|421529588|ref|ZP_15976118.1| glycosyl hydrolase [Pseudomonas putida S11]
gi|402213020|gb|EJT84387.1| glycosyl hydrolase [Pseudomonas putida S11]
Length = 331
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 32/171 (18%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D +G+ +G LL T DGGK W P S + + S++ G E
Sbjct: 137 LLDVWF--SDARNGYAVGVFNLLLRTVDGGKHWQPWLDHSDNPQGLH--LTSLAAVGDEL 192
Query: 177 WIVGKPAILLHTSDAGESWERI--PLSSQL------PGDMAF----------------WQ 212
+I G+ +LL GE + R+ P + L PG + WQ
Sbjct: 193 YITGEQGLLLKQD--GERFSRVETPYAGTLFGAVGKPGVLVVYGLRGHAYRSTDGGRQWQ 250
Query: 213 PHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
P + V + G DG LWL + G L LS+ G + F VP +RG
Sbjct: 251 PVSTGVNTSLTAAGVDRDGQLWLASQAGDLLLSRDDGAS--FSPVPQSARG 299
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 59/205 (28%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
+G R +L + D G W +P + + N++SF E GW VG ++LH+ D
Sbjct: 58 VGPRGHILYSDDHGAHWQQAQVPVSAD------LNAVSFATPELGWAVGHDGVVLHSRDG 111
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G W++ QL G RA+A
Sbjct: 112 GVHWQK-----QLDG---------RALA-------------------------------- 125
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANL 309
E++P +LDV + +A G +LL+T +GGK W + + + +L
Sbjct: 126 ---EQLPGTGSDNALLDVWFSDARNGYAVGVFNLLLRTVDGGKHWQPWLDHSDNPQGLHL 182
Query: 310 YSVKFINEKKGFVLGNDGVLLQYLG 334
S+ + ++ ++ G G+LL+ G
Sbjct: 183 TSLAAVGDEL-YITGEQGLLLKQDG 206
>gi|398928106|ref|ZP_10663269.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM48]
gi|398168885|gb|EJM56885.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM48]
Length = 350
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L ++DGG TW +
Sbjct: 84 SDDQGATWAQAKVPTRA---LLTSVFFVDD-KHGWAVGHDAQILASEDGGATW------T 133
Query: 157 AEEEDFNYR--FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + FK + G+ VG L+ T+D G+ WE S +L + Q
Sbjct: 134 KQFEDLKRESPLLDVWFKDVDSGFAVGAYGSLMETTDGGKHWE--DASDRLDNED---QY 188
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H A+A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 189 HLNAIAA-------VKDAGLFIVGEQGSMFRSADWGQTWEKLEGPYEGSLFGV--IGTAQ 239
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW 296
+ A G G L ++T+ G TW
Sbjct: 240 ANTLLAYGLRGNLYRSTDFGSTW 262
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ + W + + + LLD+ F D++ GF +G +L+ET DGGK W
Sbjct: 121 QILASEDGGATWTKQFEDLKRESPLLDVWF--KDVDSGFAVGAYGSLMETTDGGKHWEDA 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI 198
S + ED Y N+I+ G +IVG+ + ++D G++WE++
Sbjct: 179 S-DRLDNED-QYHLNAIAAVKDAGLFIVGEQGSMFRSADWGQTWEKL 223
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ GK VG +L++ D G +W ++P + L H AV Q +
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGATWAQAKVPTRALLTSVFFVDDKHGWAVGHDAQILA 124
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W T++FE++ +S +LDV ++ D +A G G L
Sbjct: 125 SEDGGATW----------------TKQFEDLKRESP---LLDVWFKDVDSGFAVGAYGSL 165
Query: 287 LKTTNGGKTWIREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
++TT+GGK W E A+D + +L ++ + + F++G G + +
Sbjct: 166 METTDGGKHW--EDASDRLDNEDQYHLNAIAAVKDAGLFIVGEQGSMFR 212
>gi|392541426|ref|ZP_10288563.1| hypothetical protein PpisJ2_06310 [Pseudoalteromonas piscicida JCM
20779]
Length = 322
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI 315
EVP+QS + V ++ +D WA G ++KTT+GGKTW ++ + ++FI
Sbjct: 61 EVPIQSL---LTSVTFKGKDIGWACGHDASIIKTTDGGKTWALKQYLPTLEKPCLDIEFI 117
Query: 316 NEKKGFVLGNDGVLLQ 331
+++ GF +G G+ +
Sbjct: 118 DQQHGFAVGAYGMFFE 133
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS-IPSAEEEDF 162
W + +P+ +L + F D+ G+ G ++++T DGGKTWA + +P+ E+
Sbjct: 57 WTQAEVPIQS--LLTSVTFKGKDI--GWACGHDASIIKTTDGGKTWALKQYLPTLEKPCL 112
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQL-PGDMAF 210
+ F + G+ VG + T+D GESW + +S + P D+ +
Sbjct: 113 DIEF----IDQQHGFAVGAYGMFFETTDGGESWTKRFISEFVHPDDVDY 157
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 24/103 (23%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI-------------------PSA 157
LDI F+ D HGF +G ET DGG++W R I P+A
Sbjct: 111 CLDIEFI--DQQHGFAVGAYGMFFETTDGGESWTKRFISEFVHPDDVDYLADLKEQDPAA 168
Query: 158 EEEDFNY---RFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
E++ + FN + ++ G+ ++ + D G++W++
Sbjct: 169 YEQETAFILPHFNRLLIAEGMMYLAGEMGLVAQSDDLGKTWQK 211
>gi|398920979|ref|ZP_10659614.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM49]
gi|398167068|gb|EJM55150.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM49]
Length = 358
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G R + + D G W +P + + ++ F +GW VG ++LH+SDA
Sbjct: 61 VGQRGHIFYSDDAGLQWHQAKVPVSSD------LVAVHFPSPSQGWAVGHDGVVLHSSDA 114
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
GESW R + G +A AR + L+ +
Sbjct: 115 GESWSR-QFDGRDVGSTLLAYYRKQAAARPDDEAVVTS--------------LADAQRMF 159
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANL 309
EE + P LDV +++ + G ++ +T NGG+ W ++ + A NL
Sbjct: 160 EEGADKP-------FLDVWFQNDQVGYIVGAFNLIFRTDNGGRNWTPWLDRTDNPSALNL 212
Query: 310 YSVKFINEKKGFVLGNDGVLLQY 332
Y+++ + FV+G G++L++
Sbjct: 213 YALRPAGNEL-FVVGEQGLVLKF 234
>gi|289626115|ref|ZP_06459069.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|289650350|ref|ZP_06481693.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
aesculi str. 2250]
gi|422581325|ref|ZP_16656468.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330866175|gb|EGH00884.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 291
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DL+ GF +G LL T DGG+ W
Sbjct: 61 QILASNDGGKSWSKQFEDLKREAPLLDVWF--KDLDTGFAVGAYGALLSTVDGGQHWEDV 118
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y NSI+ G +IVG+ + +SD G++WE++ P L G +
Sbjct: 119 S-ERLDNED-QYHLNSIAQVKDAGLFIVGEAGSMFRSSDQGQTWEKLEGPYQGSLFGVIG 176
Query: 210 FWQP 213
QP
Sbjct: 177 TAQP 180
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 23/158 (14%)
Query: 178 IVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
+VG +L + D G++W R+P L + H AV Q + G W
Sbjct: 14 VVGDHGHILFSDDQGKTWSQARVPTRQLLTAVFFVDEQHGWAVGHDAQILASNDGGKSW- 72
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
+++FE++ ++ +LDV ++ D +A G G LL T +GG+
Sbjct: 73 ---------------SKQFEDLKREAP---LLDVWFKDLDTGFAVGAYGALLSTVDGGQH 114
Query: 296 W--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W + E+ + +L S+ + + F++G G + +
Sbjct: 115 WEDVSERLDNEDQYHLNSIAQVKDAGLFIVGEAGSMFR 152
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L ++G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 1 MLLDVAHAGARL---VVVGDHGHILFSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 51
Query: 176 -GWIVGKPAILLHTSDAGESWERI--PLSSQLP--------GDMAF-------------W 211
GW VG A +L ++D G+SW + L + P D F
Sbjct: 52 HGWAVGHDAQILASNDGGKSWSKQFEDLKREAPLLDVWFKDLDTGFAVGAYGALLSTVDG 111
Query: 212 QPHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
H V+ R+ N + D GL+++ G +F S G T E E P Q
Sbjct: 112 GQHWEDVSERLDNEDQYHLNSIAQVKDAGLFIVGEAGSMFRSSDQGQTWEKLEGPYQGSL 171
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ +G A G G L ++++ G +W I K A + L S + +
Sbjct: 172 FGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPVEFGLASATLLADGSL 229
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 230 VLVGNGGSVMR 240
>gi|255291920|dbj|BAH90409.1| glycosyl hydrolase [uncultured bacterium]
Length = 338
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 104/262 (39%), Gaps = 38/262 (14%)
Query: 73 SQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFL 132
Q L+ + + G Y S + +W+R +P P L+ ++ PD GF
Sbjct: 64 DQFKALARNDDVVMAVGDYGVVVTSSDEGRSWQRKVLPGRP--ALVSVSACPD---GGFA 118
Query: 133 -LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSD 190
L TR+ + G + R + + E S+S G W+ + L+ + D
Sbjct: 119 ALDTRRGVWLAGPDGGGFERREVETREV------VTSVSCVPGGSLWLTASFSTLVVSRD 172
Query: 191 AGESWERIPLSSQLP-GDMAFWQPHNRAVARRIQNMGWRADGG-LWLLVRGGGLFLSKGT 248
GE+WE L + F+ N V ADGG W +G
Sbjct: 173 GGETWEETTQDEDLQFSVLQFFDADNGVVVGEFGGFMSTADGGATW----------ERGA 222
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAAN 308
I EF L + +R +D W +G G++L TT+GG+TW ++ + +
Sbjct: 223 DIPNEFYP----------LGMYFRDRDTGWVSGLGGIILATTDGGETWSEQQT--DASVP 270
Query: 309 LYSVKFINEKKGFVLGNDGVLL 330
LY V +N + +G+ G LL
Sbjct: 271 LYRVVPVNGHL-YAMGDSGTLL 291
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 32/202 (15%)
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSD 190
+L + TL+ ++DGG+TW + ++ED + F G +VG+ + T+D
Sbjct: 159 WLTASFSTLVVSRDGGETWEE----TTQDEDLQFSVLQF-FDADNGVVVGEFGGFMSTAD 213
Query: 191 AGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD-GGLWLLVRGGGLFLS--KG 247
G +WER + +P + + + R ++ GW + GG+ L GG S +
Sbjct: 214 GGATWER---GADIPNEF-----YPLGMYFRDRDTGWVSGLGGIILATTDGGETWSEQQT 265
Query: 248 TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAA 307
+ VPV +A G SG LL G+ W+R A + +
Sbjct: 266 DASVPLYRVVPVNG--------------HLYAMGDSGTLLVLD--GERWVRAPNAPELLS 309
Query: 308 NLYSVKFINEKKGFVLGNDGVL 329
L ++E + V G G+L
Sbjct: 310 YLIDAVRLDEGRFLVAGGGGML 331
>gi|390953373|ref|YP_006417131.1| putative photosystem II stability/assembly factor-like protein
[Aequorivita sublithincola DSM 14238]
gi|390419359|gb|AFL80116.1| putative photosystem II stability/assembly factor-like protein
[Aequorivita sublithincola DSM 14238]
Length = 432
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 30/205 (14%)
Query: 131 FLLGTRQTLLETKDGGKTWA---PRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
F T +L+++D G+TW P S S F I F + V + +
Sbjct: 78 FTFDTEGIILKSEDAGETWEKIYPLSGTSP-------SFEKIEFVSTDKGFVAGYNLFMK 130
Query: 188 TSDAGESWERIPLSSQ--LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS 245
T D G +W + + + L +++F+ + V+ ++ N + A ++L GG + +
Sbjct: 131 TEDGGATWTPMTVGTNVYLYNNLSFFNENIGFVSAQLDNAPYFA---IYLTTDGGDTW-T 186
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNI 305
T + + + GF DV Y Q+ ++ G + K+T+GG TWI+ + I
Sbjct: 187 PATDV--------MNAGGF---DVAYADQNTLFSVGADERIAKSTDGGDTWIQIYSG--I 233
Query: 306 AANLY-SVKFINEKKGFVLGNDGVL 329
N + S F ++ G + G DG+L
Sbjct: 234 IQNYFLSAYFKDQNNGVIAGEDGLL 258
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 40/211 (18%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
KSE+A WE++Y I FV D GF+ G ++T+DGG TW P ++
Sbjct: 88 KSEDAGETWEKIYPLSGTSPSFEKIEFVSTD--KGFVAG-YNLFMKTEDGGATWTPMTVG 144
Query: 156 SAEEEDFNYRFNSISFKGKE-GWIVGK----PAILLH-TSDAGESWERIPLSSQLPG--- 206
+ Y +N++SF + G++ + P ++ T+D G++W P + +
Sbjct: 145 TNV-----YLYNNLSFFNENIGFVSAQLDNAPYFAIYLTTDGGDTW--TPATDVMNAGGF 197
Query: 207 DMAFWQPHNRAVARRIQNMGWRADGG-LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFG 265
D+A+ + + + DGG W+ + +GI + +
Sbjct: 198 DVAYADQNTLFSVGADERIAKSTDGGDTWIQIY---------SGIIQNY----------- 237
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
L ++ Q+ AG G+L T +GG TW
Sbjct: 238 FLSAYFKDQNNGVIAGEDGLLKTTHDGGATW 268
>gi|398841658|ref|ZP_10598868.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM102]
gi|398107761|gb|EJL97754.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM102]
Length = 362
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 38/206 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D GK W ++P + + N++SF +GW VG ++LH+SDA
Sbjct: 60 VGQRGHILYSDDAGKHWQQAAVPVSAD------LNAVSFPSATQGWAVGGDGVVLHSSDA 113
Query: 192 GESWERIPLSSQLPGDM--AFWQPHNRAVAR-RIQNMGWRADGGLWLLVRGGGLFLSKGT 248
G +W + QL G A H A+A N W L +++G
Sbjct: 114 GATWRK-----QLDGREIGALLVKHYSALASAEPGNEQWS-------------LLVAEGE 155
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIA 306
+ + + P +LDV + + + G ++L+T +GG++W +++ +
Sbjct: 156 RLMAQGADKP-------LLDVWFANDRLGYVVGVFNLILRTEDGGQSWTPFQDRTDNPQG 208
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQY 332
+L ++ + ++ G G+LL++
Sbjct: 209 FHLNAIASTGDAL-YIAGEQGLLLKW 233
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 28/157 (17%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D L G+++G +L T+DGG++W P + + F+ N+I+ G
Sbjct: 166 LLDVWFANDRL--GYVVGVFNLILRTEDGGQSWTPFQDRTDNPQGFH--LNAIASTGDAL 221
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAF----------------WQ 212
+I G+ +LL DA + + + Q PG+ W
Sbjct: 222 YIAGEQGLLLKWDDAQQRFAAVQTPYQGSFFGVLGKPGEALVYGLRGNVLRSIDGGHSWT 281
Query: 213 PHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTG 249
P + + I ADG L +GG + +S+G G
Sbjct: 282 PLDSGLHVSITAGIVDADGNYRLFTQGGQMLVSQGAG 318
>gi|426409491|ref|YP_007029590.1| glycosyl hydrolase [Pseudomonas sp. UW4]
gi|426267708|gb|AFY19785.1| glycosyl hydrolase [Pseudomonas sp. UW4]
Length = 358
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 32/203 (15%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G R + + D G W +P + + ++ F +GW VG ++LH+SDA
Sbjct: 61 VGQRGHIFYSDDAGLQWRQARVPVSSD------LVAVHFPSPSQGWAVGHDGVVLHSSDA 114
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
GESW R + G +A AR A GL L+ +
Sbjct: 115 GESWSR-QFDGRDVGSTLLAYYRKQAAARPDD----EAVAGL----------LADAQRMF 159
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANL 309
EE + P LDV + + + G ++ +T N G++W ++ + A NL
Sbjct: 160 EEGADKP-------FLDVWFENDQVGYIVGAFNLIFRTDNAGRSWTPWLDRTDNPSALNL 212
Query: 310 YSVKFINEKKGFVLGNDGVLLQY 332
Y+++ + FV+G G++L++
Sbjct: 213 YALRPAGNEL-FVVGEQGLVLKF 234
>gi|283778719|ref|YP_003369474.1| photosystem II stability/assembly factor-like protein [Pirellula
staleyi DSM 6068]
gi|283437172|gb|ADB15614.1| Uncharacterized photosystem II stability/assembly factor-like
protein [Pirellula staleyi DSM 6068]
Length = 1062
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
+ + D WA G GV+L TTNGG+TW R+ + +A L +V+F++ + GF +G
Sbjct: 61 IHFADHDHGWAVGDRGVILATTNGGRTWQRQNSP--VACRLAAVQFLSPQVGFAVG 114
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 65/183 (35%), Gaps = 65/183 (35%)
Query: 130 GFLLGTRQTLLETKDGGKTWA--PRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI-LL 186
G+L+G+ L T DGG +W RS+P DF+ + ++ WI G P +
Sbjct: 247 GWLVGSAGLALTTTDGGISWTLPSRSLPEIAASDFD--LHCVATYQNHVWIAGNPGTSIF 304
Query: 187 HTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK 246
++ D G SW+ SS
Sbjct: 305 YSHDGGGSWQTFRTSS-------------------------------------------- 320
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
VP+QS F LD Q WAAG G +L T +GG+TW + + A
Sbjct: 321 ---------HVPIQSLFF--LD-----QQRGWAAGAMGTILATRDGGRTWRVQNSGGKEA 364
Query: 307 ANL 309
A L
Sbjct: 365 AML 367
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 54/251 (21%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVG---- 180
D +HG+ +G R +L T +GG+TW ++ P A R ++ F + G+ VG
Sbjct: 65 DHDHGWAVGDRGVILATTNGGRTWQRQNSPVA------CRLAAVQFLSPQVGFAVGGWTH 118
Query: 181 -----KPAILLHTSDAGESWERIP-----------LSSQLPGDMAF-------------- 210
++L T D G SW +P ++S G +AF
Sbjct: 119 PYTHHTSGVVLSTRDGGFSWRVMPGLVLPRLSGLRMTSTQEG-LAFGESSSLFPSGVFRT 177
Query: 211 ------WQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGF 264
W P ++ V R+DG L+ G + L I + + R
Sbjct: 178 SDGGKSWHPVSKNVMPGWVAGDMRSDGSGVLVDHHGTVKLLAAQEIRDS-RSPSIGKRSL 236
Query: 265 GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW-IREKAADNIAANLYSVKFINEKKGFV- 322
L + + W G +G+ L TT+GG +W + ++ IAA+ + + + + V
Sbjct: 237 HQLKL--MEDGKGWLVGSAGLALTTTDGGISWTLPSRSLPEIAASDFDLHCVATYQNHVW 294
Query: 323 -LGNDGVLLQY 332
GN G + Y
Sbjct: 295 IAGNPGTSIFY 305
>gi|443644775|ref|ZP_21128625.1| Putative photosystem II stability/assembly factor-like protein
[Pseudomonas syringae pv. syringae B64]
gi|443284792|gb|ELS43797.1| Putative photosystem II stability/assembly factor-like protein
[Pseudomonas syringae pv. syringae B64]
Length = 348
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 127/303 (41%), Gaps = 34/303 (11%)
Query: 39 ISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAA----TTGLYEQP 94
+ S +LP+ S + S ++++ + + + + TL L ++ A G +
Sbjct: 19 VVASSLFALPAMAGSEAVSMATAADTPVYAIESAKASRTLLLGVAHAGARLVVVGDHGHI 78
Query: 95 AKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI 154
S+ S W + +P LL F D+ HG+ +G +L + DGGK+W
Sbjct: 79 LFSDGQGSTWSQARVPTRQ---LLTAVFFVDE-QHGWAVGHDAQVLASSDGGKSW----- 129
Query: 155 PSAEEEDFNYR--FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFW 211
+ + ED + FK + G +G +LL T+D G WE + S +L + +
Sbjct: 130 -NKQFEDLKREAPLLDVWFKDLDNGLAIGAYGLLLSTADGGLHWEDV--SDRLDNEDQY- 185
Query: 212 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGY 271
+ + D GL+++ G +F S+ G T E P Q FG+ +G
Sbjct: 186 ---------HLNGITQVKDAGLFIVGEAGSMFRSRDEGRTWEKIVGPYQGSLFGV--IGT 234
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGV 328
A G G L ++++ G +W I K A + L S + + ++GN G
Sbjct: 235 AQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASATLLADDSLVLVGNGGS 294
Query: 329 LLQ 331
+++
Sbjct: 295 VMR 297
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 91/225 (40%), Gaps = 38/225 (16%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DL++G +G LL T DGG W
Sbjct: 118 QVLASSDGGKSWNKQFEDLKREAPLLDVWF--KDLDNGLAIGAYGLLLSTADGGLHWEDV 175
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N I+ G +IVG+ + + D G +WE+I P L G +
Sbjct: 176 S-DRLDNED-QYHLNGITQVKDAGLFIVGEAGSMFRSRDEGRTWEKIVGPYQGSLFGVIG 233
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRG---- 263
QP LL G G LF S G + + P++ +G
Sbjct: 234 TAQPST-------------------LLAYGLRGNLFRSSDFGDSWQ----PIELKGARGP 270
Query: 264 --FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
FG+ + D G G ++++T+ G+T+ D I+
Sbjct: 271 LEFGLASATLLADDSLVLVGNGGSVMRSTDDGETFAVFNRPDRIS 315
>gi|298157372|gb|EFH98455.1| BNR/Asp-box repeat protein [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
Length = 349
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DL+ GF +G LL T DGG+ W
Sbjct: 119 QILASNDGGKSWGKQFEDLKREAPLLDVWF--KDLDTGFAVGAYGALLSTVDGGQHWEDV 176
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y NSI+ G +IVG+ + +SD G++WE++ P L G +
Sbjct: 177 S-ERLDNED-QYHLNSIAQVKDAGLFIVGEAGSMFRSSDQGQTWEKLEGPYQGSLFGVIG 234
Query: 210 FWQP 213
QP
Sbjct: 235 TAQP 238
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
++ G +VG +L + D G++W R+P L + H AV Q +
Sbjct: 63 VAHAGARLVVVGDHGHILFSDDQGKTWSQARVPTRQLLTAVFFVDEQHGWAVGHDAQILA 122
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G W ++FE++ ++ +LDV ++ D +A G G L
Sbjct: 123 SNDGGKSW----------------GKQFEDLKREAP---LLDVWFKDLDTGFAVGAYGAL 163
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L T +GG+ W + E+ + +L S+ + + F++G G + +
Sbjct: 164 LSTVDGGQHWEDVSERLDNEDQYHLNSIAQVKDAGLFIVGEAGSMFR 210
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L ++G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 59 LLLDVAHAGARL---VVVGDHGHILFSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 109
Query: 176 -GWIVGKPAILLHTSDAGESWERI--PLSSQLP--------GDMAF-------------W 211
GW VG A +L ++D G+SW + L + P D F
Sbjct: 110 HGWAVGHDAQILASNDGGKSWGKQFEDLKREAPLLDVWFKDLDTGFAVGAYGALLSTVDG 169
Query: 212 QPHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
H V+ R+ N + D GL+++ G +F S G T E E P Q
Sbjct: 170 GQHWEDVSERLDNEDQYHLNSIAQVKDAGLFIVGEAGSMFRSSDQGQTWEKLEGPYQGSL 229
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ +G A G G L ++++ G +W I K A + L S + +
Sbjct: 230 FGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPVEFGLASATLLADGSL 287
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 288 VLVGNGGSVMR 298
>gi|325274191|ref|ZP_08140316.1| hypothetical protein G1E_13557 [Pseudomonas sp. TJI-51]
gi|324100675|gb|EGB98396.1| hypothetical protein G1E_13557 [Pseudomonas sp. TJI-51]
Length = 340
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 29/235 (12%)
Query: 70 QFVSQTATLSLSISLAAT--------TGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIA 121
Q+ +++A S S+ + AT G S++ + W + +P LL
Sbjct: 34 QYSTESAKASQSLLIGATHAGKRLVVVGDRGHILFSDDQGNTWTQARVPTRQ---LLTAV 90
Query: 122 FVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGK 181
F DD G+ +G +L + DGG TW + A E + + G+ VG
Sbjct: 91 FFIDD-KRGWAVGHDAQVLTSSDGGATWTKQFEDLAREAPL---LDVTFLDARHGFAVGA 146
Query: 182 PAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG 241
L T+D G+ W+ + P + + + D GL+++ GG
Sbjct: 147 YGAFLETTDGGQHWQDVAERLDNPDQL------------HLNGITQVRDAGLFIVGEQGG 194
Query: 242 LFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+F S G T + P + FG+ +G RS A G G L ++ + G +W
Sbjct: 195 MFRSADNGQTWAKLQGPYEGSLFGV--IGTRSPRTLLAYGLRGNLFRSADFGDSW 247
>gi|284047099|ref|YP_003397439.1| hypothetical protein Cwoe_5660 [Conexibacter woesei DSM 14684]
gi|283951320|gb|ADB54064.1| hypothetical protein Cwoe_5660 [Conexibacter woesei DSM 14684]
Length = 742
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 84/209 (40%), Gaps = 29/209 (13%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKP--A 183
D HGF +G T DGG+ W P+ + + + + +I E ++ A
Sbjct: 225 DPAHGFAVGQNGLFARTVDGGQRWTPKDLGAGALD-----YTAIRCANAELCVLSTATGA 279
Query: 184 ILLHTSDAGESWERIPLSSQLP-GDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 242
L+ TSDAGE+ + S P AF P RI +G A G + G
Sbjct: 280 QLVRTSDAGETAGAVITPSTDPIYAAAFASPT------RIAAVG--ASGSTVVSDDAGTT 331
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
F + G +T + V D R A+A G +G L KT +GG+TW R
Sbjct: 332 FRAIGGRLTGSYGAV---------YDGAARG--SAFALGEAGALAKTLDGGRTWTRGNVP 380
Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
A L V F G+ L +DG L +
Sbjct: 381 TT--AGLRHVSFPTTSVGYALDDDGGLFR 407
>gi|398846906|ref|ZP_10603854.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM84]
gi|398252105|gb|EJN37314.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM84]
Length = 358
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 118/276 (42%), Gaps = 50/276 (18%)
Query: 64 SSLNRRQFVSQTATLSLSISLAATTGLY----EQPAKSEEALSAWERVYIPVDPGVVLLD 119
+SLN+ ++ TL+L + A Y + PAK+ S L D
Sbjct: 2 ASLNKYAPLALAITLALGGTFGAAQAAYVDVLDLPAKASALASH-----------TALRD 50
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWI 178
+A D L +G R ++ + + G+ W S+P + + N++ F E GW
Sbjct: 51 VARAGDRL---VAVGPRGHIVYSDNQGQDWRQASVPVSAD------LNALVFPTPEQGWA 101
Query: 179 VGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
VG ++LH+ D G +W + L + G A H +A+A D W
Sbjct: 102 VGNDGVILHSGDGGATWA-VQLDGRRIG--ALVTAHYQALATA------HPDDERW---- 148
Query: 239 GGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI- 297
F ++G + +E + P L V + +A G ++L+T +GG +W+
Sbjct: 149 --AQFAAEGQRLEQEGADKP-------FLGVWFTDARHGYAVGVFNLILRTDDGGNSWVP 199
Query: 298 REKAADNIAA-NLYSVKFINEKKGFVLGNDGVLLQY 332
+ + DN +L +++ + ++ +V G G+LL++
Sbjct: 200 MQDSTDNPQGLHLNAIRAVGDEL-YVAGEQGLLLKW 234
>gi|399005849|ref|ZP_10708410.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM17]
gi|398124639|gb|EJM14146.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM17]
Length = 349
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 26/239 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P +L + FV D HG+ +G +L ++DGG TW +
Sbjct: 83 SDDQGQTWTQAKVPTRQ--LLTAVYFV--DAQHGWAVGHDAQVLASEDGGLTWTKQFEDL 138
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + F S G+ VG LL T+D G+ WE S +L + Q H
Sbjct: 139 KREAPLLDLWFQDTS----NGFAVGAYGALLATTDGGKHWE--DASDRLDNED---QYHL 189
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 190 NAIAA-------VKDSGLFIVGEQGSMFRSADWGQTWERLEGPYEGSFFGV--IGTAQPA 240
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G L ++T+ G TW + KAA ++ L +++ ++GN G +++
Sbjct: 241 TLLAYGLRGNLYRSTDFGSTWEQVELKAARGSLEFGLSGATLLDDGSLVIVGNGGSVVR 299
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + + + LLD+ F D ++GF +G LL T DGGK W
Sbjct: 120 QVLASEDGGLTWTKQFEDLKREAPLLDLWF--QDTSNGFAVGAYGALLATTDGGKHWEDA 177
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N+I+ G +IVG+ + ++D G++WER+ P G +
Sbjct: 178 S-DRLDNED-QYHLNAIAAVKDSGLFIVGEQGSMFRSADWGQTWERLEGPYEGSFFGVIG 235
Query: 210 FWQP 213
QP
Sbjct: 236 TAQP 239
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WL 235
VG +L++ D G++W ++P L H AV Q + DGGL W
Sbjct: 74 VGDRGHILYSDDQGQTWTQAKVPTRQLLTAVYFVDAQHGWAVGHDAQVLA-SEDGGLTW- 131
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
T++FE++ ++ +LD+ ++ +A G G LL TT+GGK
Sbjct: 132 ---------------TKQFEDLKREAP---LLDLWFQDTSNGFAVGAYGALLATTDGGKH 173
Query: 296 WIREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
W E A+D + +L ++ + + F++G G + +
Sbjct: 174 W--EDASDRLDNEDQYHLNAIAAVKDSGLFIVGEQGSMFR 211
>gi|398869464|ref|ZP_10624829.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM78]
gi|398230293|gb|EJN16338.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM78]
Length = 362
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D GK W ++P + + ++SF +GW VG ++LHTSDA
Sbjct: 60 VGQRGHILFSDDAGKHWQQAAVPVSAD------LTAVSFPNASQGWAVGNDGVVLHTSDA 113
Query: 192 GESWERIPLSSQLPGDM--AFWQPHNRAVAR-RIQNMGWRADGGLWLLVRGGGLFLSKGT 248
G +W + QL G H A+A N W L +++G
Sbjct: 114 GVTWNK-----QLDGRQIGTLLVKHYTALASAEPGNEQWP-------------LLVAEGQ 155
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAAN 308
+ E+ + P +LDV + + + G ++L+T +GG +W + +
Sbjct: 156 RLAEQGADKP-------LLDVWFANDKVGYVVGVFNLILRTDDGGLSWTPFQDRTDNPQG 208
Query: 309 LYSVKFINEKKG-FVLGNDGVLLQY 332
L+ + G ++ G G+LL++
Sbjct: 209 LHLNAIASTGDGLYIAGEQGLLLKW 233
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 28/169 (16%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D + G+++G +L T DGG +W P + + + N+I+ G
Sbjct: 166 LLDVWFANDKV--GYVVGVFNLILRTDDGGLSWTPFQDRTDNPQGLH--LNAIASTGDGL 221
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAFWQPHNRAVARRIQNMGWR 228
+I G+ +LL D + + +P Q PG++ + + W
Sbjct: 222 YIAGEQGLLLKWDDQTQRFAAVPTPYQGSFFGVLGKPGEVLVYGLRGNVLRSTDGGQNWT 281
Query: 229 A-DGGLW---------------LLVRGGGLFLSKGTGITEEFEEVPVQS 261
A D GL L +GG + +S+GTG + P ++
Sbjct: 282 ALDSGLHVSITAGLVDARGNYRLFTQGGQMLVSQGTGAQLHLVQQPART 330
>gi|407364636|ref|ZP_11111168.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas mandelii
JR-1]
Length = 350
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 103/246 (41%), Gaps = 40/246 (16%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ + W + +P LL F DD HG+ +G +L ++DGG TW +
Sbjct: 79 SDDQGATWTQAKVPTRQ---LLTSVFFADD-QHGWAVGHDAQILASEDGGATWTKQFEDL 134
Query: 157 AEE--------EDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDM 208
E +D N G+ VG LL T+D G+ WE S +L +
Sbjct: 135 KRESPLLDVWVQDVN-----------SGFAVGAYGALLTTTDGGKHWE--DASDRLDNED 181
Query: 209 AFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILD 268
Q H +A D GL+++ G +F S G T E E P + FG+
Sbjct: 182 ---QYHLNGIAA-------IKDAGLFIVGEQGSMFRSADWGQTWEKLEGPYEGSLFGV-- 229
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGN 325
+G + A G G L ++T+ G TW + KAA + L +++ ++GN
Sbjct: 230 IGTAQANTLLAYGLRGNLFRSTDFGTTWEPVELKAARGALEFGLSGATLLDDGSIVIVGN 289
Query: 326 DGVLLQ 331
G +++
Sbjct: 290 GGSVIR 295
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ + W + + + LLD+ D+N GF +G LL T DGGK W
Sbjct: 116 QILASEDGGATWTKQFEDLKRESPLLDVWV--QDVNSGFAVGAYGALLTTTDGGKHWEDA 173
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI 198
S + ED Y N I+ G +IVG+ + ++D G++WE++
Sbjct: 174 S-DRLDNED-QYHLNGIAAIKDAGLFIVGEQGSMFRSADWGQTWEKL 218
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 173 GKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD 230
GK VG +L++ D G +W ++P L H AV Q +
Sbjct: 64 GKRLVAVGDRGHILYSDDQGATWTQAKVPTRQLLTSVFFADDQHGWAVGHDAQILASEDG 123
Query: 231 GGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTT 290
G W T++FE++ +S +LDV + + +A G G LL TT
Sbjct: 124 GATW----------------TKQFEDLKRESP---LLDVWVQDVNSGFAVGAYGALLTTT 164
Query: 291 NGGKTWIREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
+GGK W E A+D + +L + I + F++G G + +
Sbjct: 165 DGGKHW--EDASDRLDNEDQYHLNGIAAIKDAGLFIVGEQGSMFR 207
>gi|402700680|ref|ZP_10848659.1| glycosyl hydrolase [Pseudomonas fragi A22]
Length = 357
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 30/202 (14%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D GK W S+P + + Y F S + +GW VG ++LH+SDAG
Sbjct: 60 VGQRGHILYSDDAGKQWTQASVPLSSDLSAVY-FPSAT----QGWAVGNDGVVLHSSDAG 114
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
+W R L + GD+ A+A N W L +++G +
Sbjct: 115 VTW-RKQLDGRQIGDLLIKHYTALAIAEP-GNEQWP-------------LLVAEGQRLAA 159
Query: 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANLY 310
E + P +LDV + + + G ++L+T +GG++W +++ + +L
Sbjct: 160 EGADKP-------LLDVWFANDRLGYVVGVFNLILRTEDGGRSWTPFQDRTDNPQGFHLN 212
Query: 311 SVKFINEKKGFVLGNDGVLLQY 332
++ + ++ G G++L++
Sbjct: 213 AIASTGDAL-YIAGEQGLVLKW 233
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D L G+++G +L T+DGG++W P + + F+ N+I+ G
Sbjct: 166 LLDVWFANDRL--GYVVGVFNLILRTEDGGRSWTPFQDRTDNPQGFH--LNAIASTGDAL 221
Query: 177 WIVGKPAILLHTSDAGESWERI 198
+I G+ ++L + + + I
Sbjct: 222 YIAGEQGLVLKWDETAQRFAAI 243
>gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum seropedicae SmR1]
gi|300076010|gb|ADJ65409.1| oxidoreductase [Herbaspirillum seropedicae SmR1]
Length = 327
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 37/220 (16%)
Query: 83 SLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLET 142
+LAA G+ P ++ A +R ++LD A + + +G R ++ +
Sbjct: 17 TLAAAQGMEPVPVRAAVADRFADRA--------MMLDAALAGERV---VAVGARGEVILS 65
Query: 143 KDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPL 200
DGG+ W R +P ++ ++SF KEGW VG +++HT+D GE+W+
Sbjct: 66 DDGGRQWRQARQVP------VDFTLTAVSFVDDKEGWAVGHGGVVIHTADGGETWQLQRS 119
Query: 201 SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPV- 259
++ + QP V R + GW A GLW L L ++ G T +PV
Sbjct: 120 ATDVD------QPLF-TVYFRDREHGWAA--GLWSL-----LLQTEDGGKTWTTLHLPVA 165
Query: 260 ---QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ +L S D + A G L ++T+ G+ W
Sbjct: 166 AGSKRSDLNLLRFFPGSGDTLYLAAEQGTLFRSTDAGQHW 205
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSV 312
+ +VPV F + V + E WA G GV++ T +GG+TW +++A ++ L++V
Sbjct: 74 QARQVPVD---FTLTAVSFVDDKEGWAVGHGGVVIHTADGGETWQLQRSATDVDQPLFTV 130
Query: 313 KFINEKKGFVLGNDGVLLQ 331
F + + G+ G +LLQ
Sbjct: 131 YFRDREHGWAAGLWSLLLQ 149
>gi|404497097|ref|YP_006721203.1| repeat-containing protein [Geobacter metallireducens GS-15]
gi|78194705|gb|ABB32472.1| repeat-containing protein [Geobacter metallireducens GS-15]
Length = 352
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 89/203 (43%), Gaps = 34/203 (16%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK-GKEGWIVGKPAILLHTSDA 191
+G R +L + D GK W ++P + S+ F +GW VG ++LH+ D
Sbjct: 57 VGARGLVLLSDDNGKKWQQVAVPVSSN------LVSVQFPVPDQGWAVGHDGVVLHSGDG 110
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G +W S QL G+ + + + + + D + + I
Sbjct: 111 GRTW-----SKQLDGNQV-----AKIMLKHYEKLAAEGD--------------AAASKIL 146
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR--EKAADNIAANL 309
+ + + + +DV + + E + AG +++ TT+ GKTW+ E+ + ++
Sbjct: 147 PDIQRILQEGADKPFMDVWFLDEKEGFVAGAFNLIMHTTDAGKTWVPLFERTDNPKNLHI 206
Query: 310 YSVKFINEKKGFVLGNDGVLLQY 332
Y++K + K+ ++ G G+L ++
Sbjct: 207 YALKGVG-KEVYLAGEMGMLRRW 228
>gi|209966699|ref|YP_002299614.1| hypothetical protein RC1_3444 [Rhodospirillum centenum SW]
gi|209960165|gb|ACJ00802.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 333
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 96/220 (43%), Gaps = 39/220 (17%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
L+D+ F DD HG +G LET DGG+TW R I EED +Y N+I +
Sbjct: 139 LMDVLF--DDPQHGMAVGAYGLFLETDDGGRTWTRRRI----EED-DYHLNAIIAPTPDL 191
Query: 177 WIVGKPAILLHTS-DAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
++ + H S D G +WE + Q P + +++ G A G +
Sbjct: 192 RLIAGEFGMAHVSRDRGRTWE----AMQTPYEGSYF--------------GALAVGPETV 233
Query: 236 LVRG--GGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD-EAWAAGGSGVLLKTTNG 292
LV G G ++ S G T V++R L G R D G G++L +T+
Sbjct: 234 LVFGLQGNIYRSTDAGAT----WTAVENRSTAGLLGGTRLSDGRVVLVGMQGIVLTSTDQ 289
Query: 293 GKTWIREKAADNIAANLYSVKFINEKKG--FVLGNDGVLL 330
G+++ E+ D IA + I G + G DGVL+
Sbjct: 290 GRSFTLEQRPDRIAL----AEAIEAPDGSLILFGQDGVLM 325
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 45/245 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
+LLD A D L +G R +L + D G+TW +P + + F +
Sbjct: 55 LLLDAARAGDRL---VAVGQRGHILLSDDNGRTWRQMPVP------VDSALTGVFFVDAR 105
Query: 175 EGWIVGKPAILLHTSDAGESW--ERIPLSSQLP-GDMAFWQP-HNRAVA----------- 219
GW VG +++LHT D GESW + +LP D+ F P H AV
Sbjct: 106 NGWAVGHDSVILHTGDGGESWTLQHAAPDWELPLMDVLFDDPQHGMAVGAYGLFLETDDG 165
Query: 220 ------RRIQNMGWRADGGL-----WLLVRG--GGLFLSKGTGITEEFEEVPVQSRGFGI 266
RRI+ + + + L+ G G +S+ G T E + P + FG
Sbjct: 166 GRTWTRRRIEEDDYHLNAIIAPTPDLRLIAGEFGMAHVSRDRGRTWEAMQTPYEGSYFGA 225
Query: 267 LDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA-ANLYSVKFINEKKGFVLGN 325
L VG + G G + ++T+ G TW A +N + A L +++ + ++G
Sbjct: 226 LAVG---PETVLVFGLQGNIYRSTDAGATW---TAVENRSTAGLLGGTRLSDGRVVLVGM 279
Query: 326 DGVLL 330
G++L
Sbjct: 280 QGIVL 284
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 240 GGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIRE 299
G + LS G T VPV S G+ V R+ WA G V+L T +GG++W +
Sbjct: 73 GHILLSDDNGRTWRQMPVPVDSALTGVFFVDARN---GWAVGHDSVILHTGDGGESWTLQ 129
Query: 300 KAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
AA + L V F + + G +G G+ L+
Sbjct: 130 HAAPDWELPLMDVLFDDPQHGMAVGAYGLFLE 161
>gi|167033809|ref|YP_001669040.1| glycosyl hydrolase [Pseudomonas putida GB-1]
gi|166860297|gb|ABY98704.1| glycosyl hydrolase [Pseudomonas putida GB-1]
Length = 331
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 59/205 (28%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
+G R +L + D G W +P + + N++SF E GW VG ++LHT DA
Sbjct: 58 VGPRGHILYSDDHGAHWQQAQVPVSAD------LNAVSFATPELGWAVGHDGVVLHTRDA 111
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G W+R QL G RA+A
Sbjct: 112 GVHWQR-----QLDG---------RALA-------------------------------- 125
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANL 309
E++P +LDV + +A G +LL+TT+GG+ W + + + +L
Sbjct: 126 ---EQLPGAGTDNALLDVWFSDARHGYAVGVFNLLLRTTDGGEHWQPWLDHSDNPQGLHL 182
Query: 310 YSVKFINEKKGFVLGNDGVLLQYLG 334
S+ + + ++ G G+LL++ G
Sbjct: 183 TSLAAVADNL-YITGEQGLLLKWNG 206
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 68/174 (39%), Gaps = 38/174 (21%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYR-----FNSISF 171
LLD+ F D HG+ +G LL T DGG+ W P S + + +++
Sbjct: 137 LLDVWF--SDARHGYAVGVFNLLLRTTDGGEHWQPWLDHSDNPQGLHLTSLAAVADNLYI 194
Query: 172 KGKEGWI----------------------VGKPAILLHTSDAGESWERIPLSSQLPGDMA 209
G++G + +GKP +LL G ++ Q
Sbjct: 195 TGEQGLLLKWNGERFSRVDTPYAGTLFGAIGKPGVLLIYGLRGHAYRSTDGGEQ------ 248
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
WQP + V + G DG LWL + G L LS+ G + F VP +RG
Sbjct: 249 -WQPVDTGVNTSLTAAGIDRDGQLWLASQAGDLLLSRDDGAS--FRPVPQSARG 299
>gi|104780871|ref|YP_607369.1| hypothetical protein PSEEN1714 [Pseudomonas entomophila L48]
gi|95109858|emb|CAK14563.1| conserved hypothetical protein; BNR domain protein [Pseudomonas
entomophila L48]
Length = 338
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 43/235 (18%)
Query: 132 LLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
++G R +L + D GKTW +P+ + ++ F K GW VG A +L ++D
Sbjct: 61 VVGDRGHILFSDDQGKTWTQARVPTRQ------LLTAVFFLDDKRGWAVGHDAQILASAD 114
Query: 191 AGESWERI--PLSSQLP-GDMAFWQP--------------------HNRAVARRIQN--- 224
G +W + LS + P D+ F P H + VA R+ N
Sbjct: 115 GGATWSKQFEDLSREAPLLDVRFLDPQHGFAVGAYGALLETLDGGQHWQDVAERLDNPEQ 174
Query: 225 -----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
+ D GL+++ GG+F S+ G + E P + FG+ +G + A
Sbjct: 175 LHLNAITTVKDAGLFIVGEQGGMFRSRDNGQSWSKVEGPYEGSLFGV--IGTAQPNTLLA 232
Query: 280 AGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++T+ G +W I +A + L S +++ ++GN G +L+
Sbjct: 233 YGLRGNLFRSTDFGDSWQPIELQAERGPLEFGLASATLLDDGSLVLVGNGGSVLR 287
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 97/241 (40%), Gaps = 34/241 (14%)
Query: 75 TATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLG 134
TA L G Q S + + W + + + LLD+ F+ D HGF +G
Sbjct: 90 TAVFFLDDKRGWAVGHDAQILASADGGATWSKQFEDLSREAPLLDVRFL--DPQHGFAVG 147
Query: 135 TRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGE 193
LLET DGG+ W + + + N+I+ G +IVG+ + + D G+
Sbjct: 148 AYGALLETLDGGQHW--QDVAERLDNPEQLHLNAITTVKDAGLFIVGEQGGMFRSRDNGQ 205
Query: 194 SWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKGTG 249
SW ++ P L G + QP+ LL G G LF S T
Sbjct: 206 SWSKVEGPYEGSLFGVIGTAQPNT-------------------LLAYGLRGNLFRS--TD 244
Query: 250 ITEEFEEVPVQS-RG---FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNI 305
+ ++ + +Q+ RG FG+ G G +L++ + G+T+ AD I
Sbjct: 245 FGDSWQPIELQAERGPLEFGLASATLLDDGSLVLVGNGGSVLRSHDDGQTFSVRNRADRI 304
Query: 306 A 306
A
Sbjct: 305 A 305
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
V + WA G +L + +GG TW ++ + A L V+F++ + GF +G G
Sbjct: 92 VFFLDDKRGWAVGHDAQILASADGGATWSKQFEDLSREAPLLDVRFLDPQHGFAVGAYGA 151
Query: 329 LLQYL 333
LL+ L
Sbjct: 152 LLETL 156
>gi|257482739|ref|ZP_05636780.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|422682930|ref|ZP_16741193.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|331012267|gb|EGH92323.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
Length = 291
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DL+ GF +G LL T DGG+ W
Sbjct: 61 QILASNDGGKSWSKQFEDLKREAPLLDVWF--KDLDTGFAVGAYGALLSTVDGGQHWEDV 118
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y NSI+ G +IVG+ + ++D G++WE++ P L G +
Sbjct: 119 S-ERLDNED-QYHLNSIAQVKDAGLFIVGEAGSMFRSNDQGQTWEKLEGPYQGSLFGVIG 176
Query: 210 FWQP 213
QP
Sbjct: 177 TAQP 180
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 23/158 (14%)
Query: 178 IVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
+VG +L + D G++W R+P L + H AV Q + G W
Sbjct: 14 VVGDHGHILFSDDQGKTWSQARVPTRQLLTAVFFVDEQHGWAVGHDAQILASNDGGKSW- 72
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
+++FE++ ++ +LDV ++ D +A G G LL T +GG+
Sbjct: 73 ---------------SKQFEDLKREAP---LLDVWFKDLDTGFAVGAYGALLSTVDGGQH 114
Query: 296 W--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W + E+ + +L S+ + + F++G G + +
Sbjct: 115 WEDVSERLDNEDQYHLNSIAQVKDAGLFIVGEAGSMFR 152
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L ++G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 1 MLLDVAHAGARL---VVVGDHGHILFSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 51
Query: 176 -GWIVGKPAILLHTSDAGESWERI--PLSSQLP--------GDMAF-------------W 211
GW VG A +L ++D G+SW + L + P D F
Sbjct: 52 HGWAVGHDAQILASNDGGKSWSKQFEDLKREAPLLDVWFKDLDTGFAVGAYGALLSTVDG 111
Query: 212 QPHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
H V+ R+ N + D GL+++ G +F S G T E E P Q
Sbjct: 112 GQHWEDVSERLDNEDQYHLNSIAQVKDAGLFIVGEAGSMFRSNDQGQTWEKLEGPYQGSL 171
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ +G A G G L ++++ G +W I K A + L S + +
Sbjct: 172 FGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPVEFGLASATLLADGSL 229
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 230 VLVGNGGSVMR 240
>gi|410648746|ref|ZP_11359149.1| BNR repeat-containing protein [Glaciecola agarilytica NO2]
gi|410131755|dbj|GAC07548.1| BNR repeat-containing protein [Glaciecola agarilytica NO2]
Length = 332
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 24/109 (22%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR-SIPSAEEEDFNY----------- 164
LLD+ F + NHG +G L T+DGGKTW + D +Y
Sbjct: 118 LLDVVFFNE--NHGIAIGAYGAFLRTQDGGKTWQSELHAEFVNQYDQDYLNEIRLEDEAF 175
Query: 165 ----------RFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQ 203
NSIS G+ +I G+ +L ++D G++W+R+ + Q
Sbjct: 176 YKEELAAILPHLNSISVSGENVYIAGEAGLLAMSTDKGQTWKRMDIDYQ 224
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 27/154 (17%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMG 226
I+ G + VG+ ++ ++D G++W+++ P +S L G I G
Sbjct: 40 ITQSGDQLVAVGERGHIIRSTD-GQNWQQVEVPSTSTLTG------------VYFIGQQG 86
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEE-VPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
W A G ++++ ++ G+ + + P Q R +LDV + +++ A G G
Sbjct: 87 W-AVGHDFVILH------TQNNGLNWDVQHFAPEQERP--LLDVVFFNENHGIAIGAYGA 137
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKK 319
L+T +GGKTW E A+ + N Y ++NE +
Sbjct: 138 FLRTQDGGKTWQSELHAEFV--NQYDQDYLNEIR 169
>gi|332306616|ref|YP_004434467.1| BNR repeat-containing protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410643282|ref|ZP_11353781.1| BNR repeat-containing protein [Glaciecola chathamensis S18K6]
gi|332173945|gb|AEE23199.1| BNR repeat-containing protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410137112|dbj|GAC11968.1| BNR repeat-containing protein [Glaciecola chathamensis S18K6]
Length = 332
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 24/109 (22%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR-SIPSAEEEDFNY----------- 164
LLD+ F + NHG +G L T+DGGKTW + D +Y
Sbjct: 118 LLDVVFFNE--NHGIAIGAYGAFLRTQDGGKTWQSELHAEFVNQYDQDYLNEIRLEDEAF 175
Query: 165 ----------RFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQ 203
NSIS G+ +I G+ +L ++D G++W+R+ + Q
Sbjct: 176 YKEELAAILPHLNSISVSGENVYIAGEAGLLAMSTDKGQTWKRMDIDYQ 224
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 27/154 (17%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMG 226
I+ G + VG+ ++ ++D G++W+++ P +S L G I G
Sbjct: 40 ITQSGDQLVAVGERGHIIRSTD-GQNWQQVEVPSTSTLTG------------VYFIGQQG 86
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEE-VPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
W A G ++++ ++ G+ + + P Q R +LDV + +++ A G G
Sbjct: 87 W-AVGHDFVILH------TQNNGLNWDVQHFAPEQERP--LLDVVFFNENHGIAIGAYGA 137
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKK 319
L+T +GGKTW E A+ + N Y ++NE +
Sbjct: 138 FLRTQDGGKTWQSELHAEFV--NQYDQDYLNEIR 169
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI 315
EVP S G+ +G + WA G V+L T N G W + A L V F
Sbjct: 69 EVPSTSTLTGVYFIG----QQGWAVGHDFVILHTQNNGLNWDVQHFAPEQERPLLDVVFF 124
Query: 316 NEKKGFVLGNDGVLLQ 331
NE G +G G L+
Sbjct: 125 NENHGIAIGAYGAFLR 140
>gi|422605609|ref|ZP_16677622.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
mori str. 301020]
gi|330889264|gb|EGH21925.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
mori str. 301020]
Length = 291
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DL+ GF +G LL T DGG+ W
Sbjct: 61 QILASNDGGKSWSKQFEDLKREAPLLDVWF--KDLDTGFAVGAYGALLSTVDGGQHWEDV 118
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y NSI+ G +IVG+ + ++D G++WE++ P L G +
Sbjct: 119 S-ERLDNED-QYHLNSIAQVKDAGLFIVGEAGSMFRSNDQGQTWEKLEGPYQGSLFGVIG 176
Query: 210 FWQP 213
QP
Sbjct: 177 TAQP 180
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 23/158 (14%)
Query: 178 IVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
+VG +L + D G++W R+P L + H AV Q + G W
Sbjct: 14 VVGDHGHILFSDDQGKTWSQARVPTRQLLTAVFFVDEQHGWAVGHDAQILASNDGGKSW- 72
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
+++FE++ ++ +LDV ++ D +A G G LL T +GG+
Sbjct: 73 ---------------SKQFEDLKREAP---LLDVWFKDLDTGFAVGAYGALLSTVDGGQH 114
Query: 296 W--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W + E+ + +L S+ + + F++G G + +
Sbjct: 115 WEDVSERLDNEDQYHLNSIAQVKDAGLFIVGEAGSMFR 152
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 43/213 (20%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L ++G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 1 MLLDVAHAGARL---VVVGDHGHILFSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 51
Query: 176 -GWIVGKPAILLHTSDAGESWERI--PLSSQLP--------GDMAF-------------W 211
GW VG A +L ++D G+SW + L + P D F
Sbjct: 52 HGWAVGHDAQILASNDGGKSWSKQFEDLKREAPLLDVWFKDLDTGFAVGAYGALLSTVDG 111
Query: 212 QPHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
H V+ R+ N + D GL+++ G +F S G T E E P Q
Sbjct: 112 GQHWEDVSERLDNEDQYHLNSIAQVKDAGLFIVGEAGSMFRSNDQGQTWEKLEGPYQGSL 171
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
FG+ +G A G G L ++++ G +W
Sbjct: 172 FGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSW 202
>gi|343083980|ref|YP_004773275.1| hypothetical protein [Cyclobacterium marinum DSM 745]
gi|342352514|gb|AEL25044.1| hypothetical protein Cycma_1273 [Cyclobacterium marinum DSM 745]
Length = 936
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 35/239 (14%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
+S + W V IP + V I+FV D L G+ + +L+T + G TW
Sbjct: 136 RSTNGGATWVAVNIPTEASV--NKISFVGDLL--GYAVTADSEILKTNNAGLTW------ 185
Query: 156 SAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDM--AFWQ 212
+ F+ N++ F G+ VG ++ T D ++W+ I +S + D+ +
Sbjct: 186 ELFDSGFDVALNAVHFTDDTTGYAVGDEGAIIKTEDGAQNWQFI--NSGIDTDLKDVIFN 243
Query: 213 PHNRAVARRIQNMGWRADGGLWLLVRGGGL-FLSKGTGITEEFEEVPVQSRGFGILDVGY 271
P + DGG L GGL F+ + E E + ++ +L
Sbjct: 244 PSYPLIGVI------SGDGGTVLRTANGGLTFIGAISRTVENIERLSIRPETNNVL---- 293
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
A SGVL+ + N G +W + ++ V+F+ ++KG+++G +G+++
Sbjct: 294 -------AVAPSGVLISSNNTGSSWSLRLSG--TPSDYKGVEFVTDQKGYIVGENGLII 343
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 95/209 (45%), Gaps = 29/209 (13%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D + GF++G R + T++ G W S+ +D N + + F +G I+G+ ++
Sbjct: 411 DFDIGFVIGDRGLISRTENQGLNWEE---VSSGYDDVNLK-DIAFFNENDGLIIGEGGMV 466
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR-ADGGL-WLLVRGGGLF 243
L +SD G +W+++ + + + + N A+A + ++ D GL W + G
Sbjct: 467 LISSDGGFNWQKVSIGTNVDLNALSVLDENSAIAVSQSSAVFKTVDKGLNWEQIHTG--- 523
Query: 244 LSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAAD 303
++P + D+ + + + G +G++++T + G+ W R + A
Sbjct: 524 -----------FDMP-------LTDIEFLDESVGFITGENGLIIRTFDAGENWGRLETA- 564
Query: 304 NIAANLYSVKFINEKKGFVLGNDGVLLQY 332
N + F + G+ +G +G+L QY
Sbjct: 565 -TFQNFTGISFGDLNVGYAVGENGLLFQY 592
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 29/205 (14%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
N G++ G LL++ DGG +W +P E + F F G ++G ++
Sbjct: 42 NVGYI-GGENILLKSIDGGLSWIEMELP-VRMEVIDVSF----FDDLNGILLGDEGLIFR 95
Query: 188 TSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL-SK 246
T+D G SW + P + +Q D + L+ G L S
Sbjct: 96 TTDGGLSWAKPDY------------PEGEMLNNVVQ-----IDENIMLISGNNGTILRST 138
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
G T +P ++ + + + +A +LKT N G TW + ++A
Sbjct: 139 NGGATWVAVNIPTEAS---VNKISFVGDLLGYAVTADSEILKTNNAGLTWELFDSGFDVA 195
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQ 331
N +V F ++ G+ +G++G +++
Sbjct: 196 LN--AVHFTDDTTGYAVGDEGAIIK 218
>gi|334130189|ref|ZP_08503990.1| hypothetical protein METUNv1_01008 [Methyloversatilis universalis
FAM5]
gi|333444721|gb|EGK72666.1| hypothetical protein METUNv1_01008 [Methyloversatilis universalis
FAM5]
Length = 336
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 91/205 (44%), Gaps = 41/205 (20%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW------IVGKPAILLH 187
G+ ++ + DGG++W +S + E + +G W + G ++L+
Sbjct: 73 GSGGKIVRSDDGGRSWHRQSSNTYE-----------NLQGIAAWDTQHAVVAGNHGVILY 121
Query: 188 TSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG 247
T+D G SW+ ++Q+P N+ RI DG W + G L S
Sbjct: 122 TTDGGSSWK----AAQVPKS----DNPNKLFRVRI------FDGVAWAVGEFGSLLRSDD 167
Query: 248 TGIT--EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNI 305
G+T EE + R + DV + Q+ W G G +++TT+GG TW + + + +
Sbjct: 168 KGVTWTRAMEE---KDRAWN--DVFFHGQN-GWLVGEFGTVMRTTDGGATWTQNELDNKV 221
Query: 306 AANLYSVKFINEKKGFVLGNDGVLL 330
+ L V F +++ G +G G LL
Sbjct: 222 S--LMGVDFRDDRHGVAVGLTGTLL 244
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 23/171 (13%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D H + G +L T DGG +W +P ++ N F F G W VG+ L
Sbjct: 106 DTQHAVVAGNHGVILYTTDGGSSWKAAQVPKSDNP--NKLFRVRIFDGV-AWAVGEFGSL 162
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS 245
L + D G +W R + F+ N WL+ G + +
Sbjct: 163 LRSDDKGVTWTRAMEEKDRAWNDVFFHGQNG-----------------WLVGEFGTVMRT 205
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
G T E+ + ++ V +R A G +G LL T +GG +W
Sbjct: 206 TDGGATWTQNELDNK---VSLMGVDFRDDRHGVAVGLTGTLLVTEDGGASW 253
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
F K + + E V+ R V ++ AWAAG G ++++ +GG++W R+ +
Sbjct: 36 FFVKAEAVINKVEPKAVERRD-NFFSVVAPTEQIAWAAGSGGKIVRSDDGGRSWHRQSS- 93
Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVLL 330
N NL + + + V GN GV+L
Sbjct: 94 -NTYENLQGIAAWDTQHAVVAGNHGVIL 120
>gi|402821037|ref|ZP_10870595.1| hypothetical protein IMCC14465_18290 [alpha proteobacterium
IMCC14465]
gi|402510133|gb|EJW20404.1| hypothetical protein IMCC14465_18290 [alpha proteobacterium
IMCC14465]
Length = 328
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 22/145 (15%)
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G+ WER + G+ W P+ +Q + DG LWL LF S+G G
Sbjct: 107 GDVWER-----EAQGN---WLPNPVDTEETLQAIECAPDGKLWLAASFSTLFKSEGRG-- 156
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLY- 310
E+++ F + ++ + +++ +A G G L+KT N G++W DN+A+ Y
Sbjct: 157 EDWQSFSTYEDAF-LTELDFVNKNTGFAVGEFGTLMKTNNAGESW------DNLASTPYD 209
Query: 311 ----SVKFINEKKGFVLGNDGVLLQ 331
S F+NE+ G+V G G +L+
Sbjct: 210 FYPLSSFFLNEQTGWVGGLSGDILK 234
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
L ++ FV + N GF +G TL++T + G++W + + DF Y +S + G
Sbjct: 170 LTELDFV--NKNTGFAVGEFGTLMKTNNAGESWDNLA---STPYDF-YPLSSFFLNEQTG 223
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLP 205
W+ G +L T+D G+SW ++S+ P
Sbjct: 224 WVGGLSGDILKTTDGGQSWSSETVNSEAP 252
>gi|149375523|ref|ZP_01893293.1| Glycosyl hydrolase, BNR repeat [Marinobacter algicola DG893]
gi|149360228|gb|EDM48682.1| Glycosyl hydrolase, BNR repeat [Marinobacter algicola DG893]
Length = 329
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGK 174
+L ++ F+ D +H F+ G +L+T DGG+ W ++F Y +S
Sbjct: 171 AILNNLQFI--DADHAFITGEYGLVLKTTDGGENW---DYAGYLPDEF-YAHSSYFRSDN 224
Query: 175 EGWIVGKPAILLHTSDAGESWERIPLSSQLP 205
EGW+ G + HT+D GE+WE+ P P
Sbjct: 225 EGWVGGLNGFIYHTADGGENWEKSPTGINAP 255
>gi|330504130|ref|YP_004380999.1| hypothetical protein [Pseudomonas mendocina NK-01]
gi|328918416|gb|AEB59247.1| hypothetical protein MDS_3216 [Pseudomonas mendocina NK-01]
Length = 359
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W + + ++ LLDI F DL G+ +G LLET DGG+ W S + ED
Sbjct: 138 WTKQFEDLEREAPLLDIWF--KDLQTGYAVGAYGALLETTDGGQNWEDVS-DRLDNED-A 193
Query: 164 YRFNSISFKGKEG-WIVGKPAILLHTSDAGESWER---IPLSSQLPGDMAFWQP 213
Y N+I+ G +IVG+ + ++D G++WER +P L G + QP
Sbjct: 194 YHLNAITAVKDSGLFIVGELGQMFRSADWGQTWERLEDLPYEGSLFGVLGTDQP 247
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 25/158 (15%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WL 235
VG +L+++D G+SW+ ++P L H V Q + ADGGL W
Sbjct: 81 VGDRGHILYSNDQGQSWQQAKVPTRQMLTSLFFVDAKHGWVVGHDAQILA-TADGGLTW- 138
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
T++FE++ R +LD+ ++ +A G G LL+TT+GG+
Sbjct: 139 ---------------TKQFEDL---EREAPLLDIWFKDLQTGYAVGAYGALLETTDGGQN 180
Query: 296 W--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W + ++ + A +L ++ + + F++G G + +
Sbjct: 181 WEDVSDRLDNEDAYHLNAITAVKDSGLFIVGELGQMFR 218
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 97/239 (40%), Gaps = 44/239 (18%)
Query: 95 AKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI 154
A++ A A + P +LLD+ + L +G R +L + D G++W +
Sbjct: 46 AETSAAADAGYAIESPKAVHSLLLDVVNTGERL---VAVGDRGHILYSNDQGQSWQQAKV 102
Query: 155 PSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWER--------IPLSSQLP 205
P+ + S+ F K GW+VG A +L T+D G +W + PL
Sbjct: 103 PTRQ------MLTSLFFVDAKHGWVVGHDAQILATADGGLTWTKQFEDLEREAPLLDIWF 156
Query: 206 GDM----------AFWQPHN-----RAVARRIQN--------MGWRADGGLWLLVRGGGL 242
D+ A + + V+ R+ N + D GL+++ G +
Sbjct: 157 KDLQTGYAVGAYGALLETTDGGQNWEDVSDRLDNEDAYHLNAITAVKDSGLFIVGELGQM 216
Query: 243 FLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREK 300
F S G T E E++P + FG+L G A G G L ++T+ G +W + K
Sbjct: 217 FRSADWGQTWERLEDLPYEGSLFGVL--GTDQPATLLAYGLRGHLFRSTDFGGSWQQVK 273
>gi|425899259|ref|ZP_18875850.1| BNR/Asp-box repeat domain protein [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397890007|gb|EJL06489.1| BNR/Asp-box repeat domain protein [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 344
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + + + LLD+ F D ++GF +G LL T DGGK W
Sbjct: 115 QVLASEDGGLTWTKQFEDLKREAPLLDLWF--QDTSNGFAVGAYGALLATTDGGKHWEDA 172
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N+I+ G +IVG+ + ++D G++WER+ P G +
Sbjct: 173 S-DRLDNED-QYHLNAIAAVKDSGLFIVGEQGSMFRSADWGQTWERLEGPYEGSFFGVIG 230
Query: 210 FWQP 213
QP
Sbjct: 231 TAQP 234
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 26/239 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P +L + FV D HG+ +G +L ++DGG TW +
Sbjct: 78 SDDQGQTWTQAKVPSRQ--LLTAVYFV--DAKHGWAVGHDAQVLASEDGGLTWTKQFEDL 133
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + F S G+ VG LL T+D G+ WE S +L + Q H
Sbjct: 134 KREAPLLDLWFQDTS----NGFAVGAYGALLATTDGGKHWE--DASDRLDNED---QYHL 184
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 185 NAIAA-------VKDSGLFIVGEQGSMFRSADWGQTWERLEGPYEGSFFGV--IGTAQPA 235
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G L ++T+ G TW + KAA ++ L +++ ++GN G +++
Sbjct: 236 TLLAYGLRGNLYRSTDFGSTWEQVELKAARGSLEFGLSGATLLDDGSLVIVGNGGSVVR 294
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 29/160 (18%)
Query: 179 VGKPAILLHTSDAGESWERIPL-SSQLPGDMAFWQP-HNRAVARRIQNMGWRADGGL-WL 235
VG +L++ D G++W + + S QL + F H AV Q + DGGL W
Sbjct: 69 VGDRGHILYSDDQGQTWTQAKVPSRQLLTAVYFVDAKHGWAVGHDAQVLA-SEDGGLTW- 126
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
T++FE++ ++ +LD+ ++ +A G G LL TT+GGK
Sbjct: 127 ---------------TKQFEDLKREAP---LLDLWFQDTSNGFAVGAYGALLATTDGGKH 168
Query: 296 WIREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
W E A+D + +L ++ + + F++G G + +
Sbjct: 169 W--EDASDRLDNEDQYHLNAIAAVKDSGLFIVGEQGSMFR 206
>gi|167032560|ref|YP_001667791.1| hypothetical protein PputGB1_1550 [Pseudomonas putida GB-1]
gi|166859048|gb|ABY97455.1| conserved hypothetical protein [Pseudomonas putida GB-1]
Length = 342
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 105/261 (40%), Gaps = 34/261 (13%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S S+ + + + RQ + TA L G Q S + + W + Y +
Sbjct: 75 SDDQGSTWTQARVPTRQLL--TAVYFLDDKRGWAVGHDAQILASSDGGATWSKQYEDLAR 132
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
LLD+ F+ D HGF +G LLET DGG+ W + + + N I+
Sbjct: 133 EAPLLDVTFL--DAQHGFAVGAYGALLETTDGGQHW--QDVAERLDNPDQLHLNGIARVR 188
Query: 174 KEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD 230
+ G +IVG+ + ++D G++W ++ P L G + +P
Sbjct: 189 EAGLFIVGEQGGMFRSADNGQTWAKVQGPYEGSLFGVIGTAKPQT--------------- 233
Query: 231 GGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRG---FGILDVGYRSQDEAWAAGGSGV 285
LL G G LF S G + + E+ +RG FG+ G G
Sbjct: 234 ----LLAYGLRGNLFRSSDFGDSWQPIELKA-ARGNLEFGLAGATLVDDGSLVLVGNGGS 288
Query: 286 LLKTTNGGKTWIREKAADNIA 306
+L++T+ G+T+ AD IA
Sbjct: 289 VLRSTDDGQTFRVYNRADRIA 309
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 41/234 (17%)
Query: 132 LLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDA 191
++G R +L + D G TW +P+ + Y + K GW VG A +L +SD
Sbjct: 65 VVGDRGHILFSDDQGSTWTQARVPTRQLLTAVYFLDD-----KRGWAVGHDAQILASSDG 119
Query: 192 GESWERI--PLSSQLP-GDMAFWQP--------------------HNRAVARRIQN---- 224
G +W + L+ + P D+ F H + VA R+ N
Sbjct: 120 GATWSKQYEDLAREAPLLDVTFLDAQHGFAVGAYGALLETTDGGQHWQDVAERLDNPDQL 179
Query: 225 ----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
+ + GL+++ GG+F S G T + P + FG+ +G A
Sbjct: 180 HLNGIARVREAGLFIVGEQGGMFRSADNGQTWAKVQGPYEGSLFGV--IGTAKPQTLLAY 237
Query: 281 GGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++++ G +W I KAA N+ L +++ ++GN G +L+
Sbjct: 238 GLRGNLFRSSDFGDSWQPIELKAARGNLEFGLAGATLVDDGSLVLVGNGGSVLR 291
>gi|421159414|ref|ZP_15618556.1| hypothetical protein PABE173_2147 [Pseudomonas aeruginosa ATCC
25324]
gi|421167883|ref|ZP_15626018.1| hypothetical protein PABE177_2828 [Pseudomonas aeruginosa ATCC
700888]
gi|404532523|gb|EKA42402.1| hypothetical protein PABE177_2828 [Pseudomonas aeruginosa ATCC
700888]
gi|404547301|gb|EKA56304.1| hypothetical protein PABE173_2147 [Pseudomonas aeruginosa ATCC
25324]
Length = 320
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 66/259 (25%)
Query: 103 AWERVYIPVDPGVVLLD---------------------IAFVPDDLNHGFLLGTRQTLLE 141
A ERV D GVVLL ++FV D HG+ +G +L
Sbjct: 48 AGERVVAVGDHGVVLLSDDQGRQWRQARSVPLSTPLTGVSFV--DARHGWAVGHWGAILS 105
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLS 201
T DGG++W + + S E+ F F ++G VG +++L T D G++W PL
Sbjct: 106 TADGGESWQVQRLSSEEDRPL---FAVHFFDARQGVAVGLWSLVLTTEDGGKTWTEQPL- 161
Query: 202 SQLP------------------GDMAFWQPHNRAVARRIQNMGWR-----ADGGLW---- 234
Q P G + H + + Q WR +G LW
Sbjct: 162 -QAPPGAKRADLNLMGLFADNHGSLYATAEHGQVLRSDDQGKNWRYLDTGYEGTLWSGAV 220
Query: 235 -----LLVRGGGLFLSKGTGITEEFEEVPVQSRG--FGILDVGYRSQDEAWAAGGSGVLL 287
LL+ G L +G+ + F VP Q +G I G R A G G+ +
Sbjct: 221 LADGRLLLGGQRGTLLQGSADGKAFRRVPTQGKGSVTSIAVAGAR----VLAVGLDGLKV 276
Query: 288 KTTNGGKTWIREKAADNIA 306
++ +GG ++ +AD ++
Sbjct: 277 RSRDGGNSFQEAPSADGLS 295
>gi|347734843|ref|ZP_08867826.1| hypothetical protein AZA_87772 [Azospirillum amazonense Y2]
gi|346922082|gb|EGY02586.1| hypothetical protein AZA_87772 [Azospirillum amazonense Y2]
Length = 356
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI-SFKGKE 175
L+D+ F DD +HG +G LET DGGKTW R I D + N+I + G
Sbjct: 165 LMDVLF--DDADHGIAVGAYGLFLETADGGKTWTKRRI-----TDDDLHLNAIFATGGDT 217
Query: 176 GWIVGKPAILLHTSDAGESWERIPL 200
+VG+ + ++D G +W + PL
Sbjct: 218 RMVVGEAGGVYTSADRGRTWTKRPL 242
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G +W R +P+ N + F K+GW VG A +LHT+D
Sbjct: 95 VGERGHILLSDDNGHSW--RQVPAPA----NATLTGVRFIDAKQGWAVGHDATILHTTDG 148
Query: 192 GESW 195
GESW
Sbjct: 149 GESW 152
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI-P 155
S++ +W +V P + L + F+ D G+ +G T+L T DGG++W ++ P
Sbjct: 104 SDDNGHSWRQVPAPAN--ATLTGVRFI--DAKQGWAVGHDATILHTTDGGESWTLQNFAP 159
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
E+ + F+ G VG + L T+D G++W +
Sbjct: 160 DWEQPLMDVLFDD----ADHGIAVGAYGLFLETADGGKTWTK 197
>gi|313110894|ref|ZP_07796737.1| hypothetical protein PA39016_002840003 [Pseudomonas aeruginosa
39016]
gi|386066154|ref|YP_005981458.1| hypothetical protein NCGM2_3225 [Pseudomonas aeruginosa NCGM2.S1]
gi|12698404|gb|AAK01518.1| putative oxidoreductase [Pseudomonas aeruginosa]
gi|310883239|gb|EFQ41833.1| hypothetical protein PA39016_002840003 [Pseudomonas aeruginosa
39016]
gi|348034713|dbj|BAK90073.1| hypothetical protein NCGM2_3225 [Pseudomonas aeruginosa NCGM2.S1]
Length = 320
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 66/259 (25%)
Query: 103 AWERVYIPVDPGVVLLD---------------------IAFVPDDLNHGFLLGTRQTLLE 141
A ERV D GVVLL ++FV D HG+ +G +L
Sbjct: 48 AGERVVAVGDHGVVLLSDDQGRQWRQARSVPLSTPLTGVSFV--DARHGWAVGHWGAILS 105
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLS 201
T DGG++W + + S E+ F F ++G VG +++L T D G++W PL
Sbjct: 106 TADGGESWQVQHLSSEEDRPL---FAVHFFDARQGVAVGLWSLVLTTEDGGKTWTEQPL- 161
Query: 202 SQLP------------------GDMAFWQPHNRAVARRIQNMGWR-----ADGGLW---- 234
Q P G + H + + Q WR +G LW
Sbjct: 162 -QAPPGAKRADLNLMGLFADNHGTLYATAEHGQVLRSDDQGKNWRYLDTGYEGTLWSGAV 220
Query: 235 -----LLVRGGGLFLSKGTGITEEFEEVPVQSRG--FGILDVGYRSQDEAWAAGGSGVLL 287
LL+ G L +G+ + F VP Q +G I G R A G G+ +
Sbjct: 221 LADGRLLLGGQRGTLLQGSADGKAFRRVPTQGKGSVTSIAVAGAR----VLAVGLDGLKV 276
Query: 288 KTTNGGKTWIREKAADNIA 306
++ +GG ++ +AD ++
Sbjct: 277 RSRDGGNSFQEAPSADGLS 295
>gi|373954383|ref|ZP_09614343.1| Glycosyl hydrolase family 32 domain protein [Mucilaginibacter
paludis DSM 18603]
gi|373890983|gb|EHQ26880.1| Glycosyl hydrolase family 32 domain protein [Mucilaginibacter
paludis DSM 18603]
Length = 1648
Score = 50.8 bits (120), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAI 184
D ++GF+ G Q L+ T DGG TW + PS + FN F+SI+F G+I +
Sbjct: 795 DEDNGFICGNGQLLMRTSDGGATWVNVTTPS---QGFNIGFSSIAFSNANNGFIGCSNGV 851
Query: 185 LLHTSDAGESWER 197
+L T D G +W +
Sbjct: 852 ILQTKDGGATWTK 864
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 29/199 (14%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRF-NSISF-KGKEGWIVGKPAIL 185
N G++LG ++++T+DGG +W P E D +Y + N F G+ G L
Sbjct: 715 NTGYVLGYYGSMVKTEDGGASWFP-----IESPDLSYPYLNRFYFYSALVGYWFGDYK-L 768
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGG-LWLLVRGGGLFL 244
T D G+SW+++ S F N + Q + +DGG W+ V
Sbjct: 769 YKTIDGGKSWKKLSFSGSSLSAGWFVDEDNGFICGNGQLLMRTSDGGATWVNV------- 821
Query: 245 SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADN 304
P Q G + + + + + +GV+L+T +GG TW + A
Sbjct: 822 -----------TTPSQGFNIGFSSIAFSNANNGFIGCSNGVILQTKDGGATWTKAGTAPG 870
Query: 305 IAANLYSVKFINEKKGFVL 323
N +K +EK ++L
Sbjct: 871 SYIN--RMKVYDEKTFYIL 887
Score = 41.6 bits (96), Expect = 0.59, Method: Composition-based stats.
Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 33/225 (14%)
Query: 114 GVVLLDIAFVPDDL----NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI 169
G+ D+A+ DD+ N +G + +L + + G W I + E F N
Sbjct: 656 GITGQDLAYTLDDVAYTNNRIIAVGAQGKILTSVNDGVDW--NLINTGTSESFG---NIQ 710
Query: 170 SFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPH-NRAVARRIQNMGWR 228
G+++G ++ T D G SW P+ S D+++ P+ NR W
Sbjct: 711 MLNDNTGYVLGYYGSMVKTEDGGASW--FPIESP---DLSY--PYLNRFYFYSALVGYWF 763
Query: 229 ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVG-YRSQDEAWAAGGSGVLL 287
D L+ + GG + ++++ L G + +D + G +L+
Sbjct: 764 GDYKLYKTIDGG-----------KSWKKLSFSGSS---LSAGWFVDEDNGFICGNGQLLM 809
Query: 288 KTTNGGKTWIR-EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+T++GG TW+ + S+ F N GF+ ++GV+LQ
Sbjct: 810 RTSDGGATWVNVTTPSQGFNIGFSSIAFSNANNGFIGCSNGVILQ 854
Score = 38.9 bits (89), Expect = 3.9, Method: Composition-based stats.
Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 32/209 (15%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS---FKGKEGWIVGKP 182
D N ++ G+ +T DGG TW ++ S +N+I F K+ G
Sbjct: 973 DANTVYIFGSGNA--KTTDGGITWKKLNVASDT-------YNAIRASWFTSKDVGYYGNL 1023
Query: 183 AILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 242
+ T + G++W ++ +PG +N A+ + N + + G+
Sbjct: 1024 NYVYKTINGGDTWTQL----NVPG------YNNNALTIKFIN------DNVGFVSTYAGI 1067
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
F + G T + + + S G G+ D+ + Q A+A G L KTT+ G TW A
Sbjct: 1068 FKTVDAGATWT-KPLTLSSLG-GVNDICFVDQQTAYAVGFGSNLYKTTDQGSTWTSSTIA 1125
Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++ L S F + + G G G L++
Sbjct: 1126 GDLF--LMSCYFFDSQTGIAGGQKGTLIR 1152
>gi|398970086|ref|ZP_10683199.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM30]
gi|398141040|gb|EJM29979.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM30]
Length = 347
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q SE+ W + + + LLD+ F D+NHG +G LLET +GGK W
Sbjct: 113 QILASEDGGLTWSKQFEDLKREAPLLDVWF--QDVNHGVAVGAYGALLETTEGGKNWQDV 170
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI 198
S ++ F+ N+I+ G +IVG+ + + D G++WE++
Sbjct: 171 SDRLDNQDQFH--LNAIAAVKDAGLFIVGEQGSMFRSPDWGQTWEKL 215
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 26/238 (10%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ W + +P +L + FV D HG+ +G +L ++DGG TW+ +
Sbjct: 76 SDDQGKTWTQAKVPTRQ--LLTAVYFVDD--KHGWAVGHDAQILASEDGGLTWSKQFEDL 131
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
E + F ++ G VG LL T++ G++W+ + S +L F H
Sbjct: 132 KREAPLLDVWFQDVN----HGVAVGAYGALLETTEGGKNWQDV--SDRLDNQDQF---HL 182
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
A+A D GL+++ G +F S G T E + P Q FG+ +G
Sbjct: 183 NAIAA-------VKDAGLFIVGEQGSMFRSPDWGQTWEKLQGPYQGSLFGV--IGTAQAQ 233
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLL 330
A G G L ++++ G TW + KAA + L + + ++GN G ++
Sbjct: 234 TLLAYGLRGNLYRSSDFGSTWQQVELKAARGALEFGLSGATLLADGSIVIVGNGGSVI 291
>gi|107101669|ref|ZP_01365587.1| hypothetical protein PaerPA_01002713 [Pseudomonas aeruginosa PACS2]
Length = 302
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 66/259 (25%)
Query: 103 AWERVYIPVDPGVVLLD---------------------IAFVPDDLNHGFLLGTRQTLLE 141
A ERV D GVVLL ++FV D HG+ +G +L
Sbjct: 30 AGERVVAVGDHGVVLLSDDQGRQWRQARSVPLSTPLTGVSFV--DARHGWAVGHWGAILS 87
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLS 201
T DGG++W + + S E+ F F ++G VG +++L T D G++W PL
Sbjct: 88 TADGGESWQVQHLSSEEDRPL---FAVHFFDARQGVAVGLWSLVLTTEDGGKTWTEQPL- 143
Query: 202 SQLP------------------GDMAFWQPHNRAVARRIQNMGWR-----ADGGLW---- 234
Q P G + H + + Q WR +G LW
Sbjct: 144 -QAPPGAKRADLNLMGLFADNHGTLYATAEHGQVLRSDDQGKNWRYLDTGYEGTLWSGAV 202
Query: 235 -----LLVRGGGLFLSKGTGITEEFEEVPVQSRG--FGILDVGYRSQDEAWAAGGSGVLL 287
LL+ G L +G+ + F VP Q +G I G R A G G+ +
Sbjct: 203 LADGRLLLGGQRGTLLQGSADGKAFRRVPTQGKGSVTSIAVAGAR----VLAVGLDGLKV 258
Query: 288 KTTNGGKTWIREKAADNIA 306
++ +GG ++ +AD ++
Sbjct: 259 RSRDGGNSFQEAPSADGLS 277
>gi|388548121|ref|ZP_10151376.1| BNR/Asp-box repeat domain-containing protein [Pseudomonas sp.
M47T1]
gi|388273837|gb|EIK93444.1| BNR/Asp-box repeat domain-containing protein [Pseudomonas sp.
M47T1]
Length = 335
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 108/273 (39%), Gaps = 40/273 (14%)
Query: 33 AQQPRFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYE 92
A PR ++ + SD S + + + RQ + TA + G
Sbjct: 47 AAGPRLVAVGDRGHILYSDDHGQSWTQAKVPT----RQLL--TAVYFVDAKHGWAVGHDA 100
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S++ + W + + + LLD+ F D + GF +G LL T DGG+ W +
Sbjct: 101 QILASDDGGATWTKQFEDLKRQAPLLDLWF--KDASTGFAVGAYGALLTTSDGGQHW--Q 156
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
+ + + FN+I G +IVG+ L + D G+SWE++ P L G +
Sbjct: 157 DVSDRIDNPDQFHFNAIGAVKDSGLFIVGEQGSLFRSRDWGQSWEKVHGPYEGSLFGLLP 216
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSKGTGITEEFEEVPVQS-RG--- 263
+P LLV G G LF S T + + VP+Q RG
Sbjct: 217 TGEPQT-------------------LLVYGLRGNLFRS--TDFGDTWANVPLQGPRGPLE 255
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
F + G SG +L++ + GKT+
Sbjct: 256 FALSGATRLDDGSLVLVGNSGTVLRSNDDGKTF 288
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 23/157 (14%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
VG +L++ D G+SW ++P L H AV Q + G W
Sbjct: 55 VGDRGHILYSDDHGQSWTQAKVPTRQLLTAVYFVDAKHGWAVGHDAQILASDDGGATW-- 112
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
T++FE++ Q+ +LD+ ++ +A G G LL T++GG+ W
Sbjct: 113 --------------TKQFEDLKRQAP---LLDLWFKDASTGFAVGAYGALLTTSDGGQHW 155
Query: 297 --IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+ ++ + + ++ + + F++G G L +
Sbjct: 156 QDVSDRIDNPDQFHFNAIGAVKDSGLFIVGEQGSLFR 192
>gi|218891804|ref|YP_002440671.1| hypothetical protein PLES_30821 [Pseudomonas aeruginosa LESB58]
gi|254240666|ref|ZP_04933988.1| hypothetical protein PA2G_01325 [Pseudomonas aeruginosa 2192]
gi|421180650|ref|ZP_15638198.1| hypothetical protein PAE2_2659 [Pseudomonas aeruginosa E2]
gi|126194044|gb|EAZ58107.1| hypothetical protein PA2G_01325 [Pseudomonas aeruginosa 2192]
gi|218772030|emb|CAW27809.1| hypothetical protein PLES_30821 [Pseudomonas aeruginosa LESB58]
gi|404545092|gb|EKA54201.1| hypothetical protein PAE2_2659 [Pseudomonas aeruginosa E2]
Length = 320
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 66/259 (25%)
Query: 103 AWERVYIPVDPGVVLLD---------------------IAFVPDDLNHGFLLGTRQTLLE 141
A ERV D GVVLL ++FV D HG+ +G +L
Sbjct: 48 AGERVVAVGDHGVVLLSDDQGRQWRQARSVPLSTPLTGVSFV--DARHGWAVGHWGAILS 105
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLS 201
T DGG++W + + S E+ F F ++G VG +++L T D G++W PL
Sbjct: 106 TADGGESWQVQRLSSEEDRPL---FAVHFFDARQGVAVGLWSLVLTTEDGGKTWTEQPL- 161
Query: 202 SQLP------------------GDMAFWQPHNRAVARRIQNMGWR-----ADGGLW---- 234
Q P G + H + + Q WR +G LW
Sbjct: 162 -QAPPGAKRADLNLMGLFADNHGTLYATAEHGQVLRSDDQGKNWRYLDTGYEGTLWSGAV 220
Query: 235 -----LLVRGGGLFLSKGTGITEEFEEVPVQSRG--FGILDVGYRSQDEAWAAGGSGVLL 287
LL+ G L +G+ + F VP Q +G I G R A G G+ +
Sbjct: 221 LADGRLLLGGQRGTLLQGSADGKAFRRVPTQGKGSVTSIAVAGAR----VLAVGLDGLKV 276
Query: 288 KTTNGGKTWIREKAADNIA 306
++ +GG ++ +AD ++
Sbjct: 277 RSRDGGNSFQEAPSADGLS 295
>gi|358448359|ref|ZP_09158863.1| hypothetical protein KYE_03730 [Marinobacter manganoxydans MnI7-9]
gi|357227456|gb|EHJ05917.1| hypothetical protein KYE_03730 [Marinobacter manganoxydans MnI7-9]
Length = 377
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 31/174 (17%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R ++ + D GKTW +P + I F GW VG ++LHTSDA
Sbjct: 56 VGERGHIIYSDDEGKTWVQGEVP------VSVTLTGIDFGSDSHGWAVGHSGVVLHTSDA 109
Query: 192 GESWE---------RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 242
G +W+ + + S+ A + A +++ W D + L
Sbjct: 110 GATWDLQIDGIRAMELAIESREEQIAAMEERIEEAPEEEKEDLEWALDDLYFAL------ 163
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
I + + PV +LDV + +++ + G G+ L+T +GG+TW
Sbjct: 164 -----ENIQADMDIGPVNP----LLDVWFENENRGFVVGAYGMFLRTMDGGETW 208
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 86/194 (44%), Gaps = 38/194 (19%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKT---WAPRSIPSAEEEDFNYRF 166
PV+P LLD+ F ++ N GF++G L T DGG+T WAPR + N+
Sbjct: 174 PVNP---LLDVWF--ENENRGFVVGAYGMFLRTMDGGETWKDWAPRI-----DNRQNFHL 223
Query: 167 NSIS-FKGKEGWIVGKPAILLHTSDAGESWER--IPLSSQLPGDMAFWQPHNRAVARRIQ 223
N I+ G +VG+ + + D GE++ER P L G + R+
Sbjct: 224 NGITRITGGALVVVGEAGQIHVSVDGGETFERREAPYEGSLFGVIG---------TGRVN 274
Query: 224 NMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD-EAWAAGG 282
M L +RG LF S + + VP S G L+ G S+D G
Sbjct: 275 EM-------LAFGLRGNMLFSSD---LGRSWRMVP-NSAG-ATLNDGVVSEDGRITLVGN 322
Query: 283 SGVLLKTTNGGKTW 296
SG +L +TNG +T+
Sbjct: 323 SGAVLMSTNGAETF 336
>gi|83647276|ref|YP_435711.1| hypothetical protein HCH_04585 [Hahella chejuensis KCTC 2396]
gi|83635319|gb|ABC31286.1| uncharacterized protein related to plant photosystem II
stability/assembly factor [Hahella chejuensis KCTC 2396]
Length = 379
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 98/284 (34%), Gaps = 71/284 (25%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR---- 152
S++ +W + PV +L + FV D G+ +G +L T+DGG W+ +
Sbjct: 68 SDDQGGSWTQSNSPVS--TLLTSLYFV--DAKQGWAVGHGAVVLHTEDGGVNWSKQFDGF 123
Query: 153 ----------------------SIPSAEEEDFNYRFNSISF------------------- 171
+ P E D Y+ +F
Sbjct: 124 AANEMVIAQAQKRVANLKEQLETAPEEEASDLEYQLEDANFALEDAMADAEVGPGKPLLD 183
Query: 172 ----KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
+EG++VG HT D G SW W P R N
Sbjct: 184 VWFKNAQEGFVVGAYGFFFHTEDGGVSWTN-------------WAPRLENTERFHLNAIA 230
Query: 228 RADGGLWLLV-RGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
+ GG +V G +F S G T E E P FG+ G + +E + G G L
Sbjct: 231 QITGGAMFIVGEAGYVFRSTDFGATWETLESPYDGSLFGV--SGNGNVNEVFVFGLRGHL 288
Query: 287 LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+ + G TW E+ ++ +L + V+GN GV+L
Sbjct: 289 FYSQDSGSTW--ERVGVDVEESLIGAAVGENGRMTVVGNSGVML 330
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 31/222 (13%)
Query: 111 VDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGG---KTWAPRSIPSAEEEDFNYRFN 167
V PG LLD+ F + GF++G T+DGG WAPR E + N
Sbjct: 175 VGPGKPLLDVWF--KNAQEGFVVGAYGFFFHTEDGGVSWTNWAPRL-----ENTERFHLN 227
Query: 168 SIS-FKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+I+ G +IVG+ + ++D G +WE + + P D + + + G
Sbjct: 228 AIAQITGGAMFIVGEAGYVFRSTDFGATWETL----ESPYDGSLFGVSGNGNVNEVFVFG 283
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
R G LF S+ +G T E V V+ ++ G SGV+
Sbjct: 284 LR-----------GHLFYSQDSGSTWERVGVDVEES---LIGAAVGENGRMTVVGNSGVM 329
Query: 287 LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
L + N G+ + D L F++ + ++G GV
Sbjct: 330 LLSQNFGEDFKVHPQPDR--QGLLGAAFLSSDQLLLVGEGGV 369
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 20/187 (10%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF- 171
P +L+D+A D L +G R ++ + D G +W + P + S+ F
Sbjct: 42 PSTLLVDVAKAGDRL---VAVGQRGHIIYSDDQGGSWTQSNSPVST------LLTSLYFV 92
Query: 172 KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRA--VARRIQNMGWRA 229
K+GW VG A++LHT D G +W + +M Q R + +++
Sbjct: 93 DAKQGWAVGHGAVVLHTEDGGVNWSK-QFDGFAANEMVIAQAQKRVANLKEQLETAPEEE 151
Query: 230 DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKT 289
L + L E P +LDV +++ E + G G T
Sbjct: 152 ASDLEYQLEDANFALEDAMADAEVGPGKP-------LLDVWFKNAQEGFVVGAYGFFFHT 204
Query: 290 TNGGKTW 296
+GG +W
Sbjct: 205 EDGGVSW 211
>gi|423095167|ref|ZP_17082963.1| glycosyl hydrolase, BNR repeat [Pseudomonas fluorescens Q2-87]
gi|397884949|gb|EJL01432.1| glycosyl hydrolase, BNR repeat [Pseudomonas fluorescens Q2-87]
Length = 367
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 39/222 (17%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF- 171
P VLL +A D L +G R +L + D G W +P + ++ F
Sbjct: 50 PRTVLLGLARAGDRL---VAVGERGIVLLSDDTGVNWRQAKVP------VSVSLTAVQFV 100
Query: 172 KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADG 231
++GW VG ++LHT D GE+W++ QL G+ A A+A +I G
Sbjct: 101 DAEQGWAVGHLGVVLHTQDGGETWQK-----QLDGERA------NALAVQIAERDAHQPG 149
Query: 232 GLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTN 291
G LV + + ++ + P LD+ + + + G + +T +
Sbjct: 150 GASNLV--------QARHMLDDGPDKP-------FLDLYFSDRLRGYVVGAYNQIFRTDD 194
Query: 292 GGKTWIR-EKAADNIAA-NLYSVKFINEKKGFVLGNDGVLLQ 331
GG++W + DN NLY ++ + ++G G+LL+
Sbjct: 195 GGRSWQPWMRHVDNPQGLNLYGIRALGNDL-LLVGERGLLLR 235
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 92 EQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP 151
QP + + A R + P LD+ F D G+++G + T DGG++W P
Sbjct: 146 HQPGGASNLVQA--RHMLDDGPDKPFLDLYF--SDRLRGYVVGAYNQIFRTDDGGRSWQP 201
Query: 152 RSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
+ N I G + +VG+ +LL ++DAG+S++ +
Sbjct: 202 WMRHVDNPQGLN--LYGIRALGNDLLLVGERGLLLRSADAGQSFQAL 246
>gi|311745350|ref|ZP_07719135.1| putative glycosyl hydrolase, BNR protein [Algoriphagus sp. PR1]
gi|126577891|gb|EAZ82111.1| putative glycosyl hydrolase, BNR protein [Algoriphagus sp. PR1]
Length = 939
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 108/251 (43%), Gaps = 44/251 (17%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPD----------DLNHGFLLGTRQTLLETKDG 145
SE ++A E + I G + + PD D N G LG + TL++T DG
Sbjct: 44 NSETGIAAGENLLIRTQDGGITWEEIQTPDFNRIQAIDFWDENQGIALGNQGTLIKTNDG 103
Query: 146 GKTWAPRS--IPSAEEEDFNYRF---NSISFKGKEGWIVGKPAILLHTSDAGESWERIPL 200
GK+W +PS ++ +F NS+ V + +LH+ D G +W +I
Sbjct: 104 GKSWEALGNLVPSTY---YDLKFISENSL-------LTVAEGGKILHSKDQGGNWTQI-- 151
Query: 201 SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQ 260
SS + D+ R+++ + + +++ G + S+ G + E
Sbjct: 152 SSGITNDL-------RSISVLNEQL-------IYIAGDNGSILKSEDKGTSWEKLSTGTS 197
Query: 261 SRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKG 320
+ + + + S++ +A G +G+++KT +GG+ W + N ++ IN
Sbjct: 198 TH---LNSLAFSSEEIGYAVGANGIIIKTEDGGENWAALNSTVNSELTSIAISPINPALV 254
Query: 321 FVLGNDGVLLQ 331
V+G + V L+
Sbjct: 255 TVVGREAVALR 265
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 98/254 (38%), Gaps = 38/254 (14%)
Query: 83 SLAATTGLYEQPAKSEEALSAWERVYIPVD-PGVVLLDIAFVPDDLNHGFLLGTRQTLLE 141
S G Q ++ A SAW V +P P + F P L ++ GT +
Sbjct: 378 SFGYAAGANGQIFRTGNAGSAW--VSVPAQTPETITGMYLFAPSVL---YVTGTNGYIAR 432
Query: 142 TKDGGKTWAPRSIPSAEE--EDFNYRFNSISFK-GKEGWIVGKPAILLHTSDAGESWERI 198
+ D G TW + + E +D Y + F G G I ++ G +WE +
Sbjct: 433 SFDSGGTWDSDIVTNTNENLDDVTYYDFQVGFAMGDNGQI--------SWTNGGNTWENL 484
Query: 199 PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVP 258
P + + A+A+ N ++ G + S+ T + P
Sbjct: 485 P---------KLTESNLNALAKLDSNTAV-------IVGNKGAILKSEDKAQTWKAINTP 528
Query: 259 VQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEK 318
+ +LDV + ++ A G G ++ T +GG+ W + + +LY V N
Sbjct: 529 FDTD---LLDVDFWNEFLGMAVGKGGHIILTKDGGENWFKLNSG--TTRDLYGVSMGNSL 583
Query: 319 KGFVLGNDGVLLQY 332
F +G+DG +L+Y
Sbjct: 584 VAFTVGDDGTILKY 597
>gi|421154342|ref|ZP_15613857.1| hypothetical protein PABE171_3217 [Pseudomonas aeruginosa ATCC
14886]
gi|451986334|ref|ZP_21934522.1| BNR repeat protein [Pseudomonas aeruginosa 18A]
gi|404522218|gb|EKA32739.1| hypothetical protein PABE171_3217 [Pseudomonas aeruginosa ATCC
14886]
gi|451756050|emb|CCQ87045.1| BNR repeat protein [Pseudomonas aeruginosa 18A]
Length = 323
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 66/259 (25%)
Query: 103 AWERVYIPVDPGVVLLD---------------------IAFVPDDLNHGFLLGTRQTLLE 141
A ERV D GVVLL ++FV D HG+ +G +L
Sbjct: 51 AGERVVAVGDHGVVLLSDDQGRQWRQARSVPLSTPLTGVSFV--DARHGWAVGHWGAILS 108
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLS 201
T DGG++W + + S E+ F F ++G VG +++L T D G++W PL
Sbjct: 109 TADGGESWQVQRLSSEEDRPL---FAVHFFDARQGVAVGLWSLVLTTEDGGKTWTEQPL- 164
Query: 202 SQLP------------------GDMAFWQPHNRAVARRIQNMGWR-----ADGGLW---- 234
Q P G + H + + Q WR +G LW
Sbjct: 165 -QAPPGAKRADLNLMGLFADNHGTLYATAEHGQVLRSDDQGKNWRYLDTGYEGTLWSGAV 223
Query: 235 -----LLVRGGGLFLSKGTGITEEFEEVPVQSRG--FGILDVGYRSQDEAWAAGGSGVLL 287
LL+ G L +G+ + F VP Q +G I G R A G G+ +
Sbjct: 224 LADGRLLLGGQRGTLLQGSADGKAFRRVPTQGKGSVTSIAVAGAR----VLAVGLDGLKV 279
Query: 288 KTTNGGKTWIREKAADNIA 306
++ +GG ++ +AD ++
Sbjct: 280 RSRDGGNSFQEAPSADGLS 298
>gi|392551458|ref|ZP_10298595.1| hypothetical protein PspoU_09310 [Pseudoalteromonas spongiae
UST010723-006]
Length = 328
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 24/104 (23%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS-AEEEDFNY----------- 164
LLDI F D NHG +G T DGGKTW S EED Y
Sbjct: 118 LLDILFF--DANHGLAIGAYGLSYRTTDGGKTWQKEFYDSLLYEEDRAYLNDLKESDPEG 175
Query: 165 ----------RFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
FN I G+ W+VG+ ++ +SD G++W+R+
Sbjct: 176 YKIETQAILPHFNKIFLDGETLWLVGELGLMATSSDMGKTWQRL 219
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS-IPSAEEEDF 162
W + PV +L + F+ + N G+ +G T+L TKDGGK W + +P ++
Sbjct: 64 WLQANSPVQS--LLTGVYFI--NANVGWAVGHDATILHTKDGGKNWTIQQFLPELDKPLL 119
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
+ F F G +G + T+D G++W++
Sbjct: 120 DILF----FDANHGLAIGAYGLSYRTTDGGKTWQK 150
>gi|358640105|dbj|BAL27401.1| hypothetical protein AZKH_p0518 [Azoarcus sp. KH32C]
Length = 321
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 102/233 (43%), Gaps = 42/233 (18%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED-FNYRFN 167
+PV+ L ++F D +G+ +G +L T DGG+TW + + ++E+ F+ F
Sbjct: 79 VPVN--ATLTGVSFA--DERNGWAVGHWGVILHTDDGGETWTRQRVETSEDRPLFSVHFT 134
Query: 168 SISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
+ G VG ++LL T D G++W+R+ L P++ R + ++
Sbjct: 135 ----DAQHGTAVGLWSLLLRTVDGGKTWDRVSLPP---------PPNDTRADRNLMHVFA 181
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYR---------SQDEAW 278
G L+++ G + S G T ++ GYR S
Sbjct: 182 DRRGELFVVGERGTVLHSNDHGQTWSYQA------------TGYRGSFWSGTSLSDGTLL 229
Query: 279 AAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
AG G L ++T+GG +W K A +++ S+ + ++ +G DG+ L+
Sbjct: 230 IAGLRGSLYRSTDGGDSW--HKVATGTQSSITSIVPLADRV-LAVGLDGLTLE 279
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
+++ W R + L + F D HG +G LL T DGGKTW S+P
Sbjct: 107 HTDDGGETWTRQRVETSEDRPLFSVHFT--DAQHGTAVGLWSLLLRTVDGGKTWDRVSLP 164
Query: 156 SAEEEDFNYRFNSISFKGKEG--WIVGKPAILLHTSDAGESW 195
+ R F + G ++VG+ +LH++D G++W
Sbjct: 165 PPPNDTRADRNLMHVFADRRGELFVVGERGTVLHSNDHGQTW 206
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYS 311
+ +VPV + + V + + WA G GV+L T +GG+TW R++ + L+S
Sbjct: 74 RQASKVPVNAT---LTGVSFADERNGWAVGHWGVILHTDDGGETWTRQRVETSEDRPLFS 130
Query: 312 VKFINEKKGFVLGNDGVLLQYL 333
V F + + G +G +LL+ +
Sbjct: 131 VHFTDAQHGTAVGLWSLLLRTV 152
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G R +L + D G +W A + N +SF + GW VG ++LHT D
Sbjct: 57 VGDRGVVLLSDDQGGSW-----RQASKVPVNATLTGVSFADERNGWAVGHWGVILHTDDG 111
Query: 192 GESWER 197
GE+W R
Sbjct: 112 GETWTR 117
>gi|431802465|ref|YP_007229368.1| glycosyl hydrolase [Pseudomonas putida HB3267]
gi|430793230|gb|AGA73425.1| glycosyl hydrolase [Pseudomonas putida HB3267]
Length = 331
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 32/171 (18%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D +G+ +G LL T DGG+ W P S + + S++ G E
Sbjct: 137 LLDVWF--SDARNGYAVGVFNLLLRTVDGGEHWQPWLDHSDNPQGLH--LTSLAAVGDEL 192
Query: 177 WIVGKPAILLHTSDAGESWERI--PLSSQL------PGDMAF----------------WQ 212
+I G+ +LL GE + R+ P + L PG + WQ
Sbjct: 193 YITGEQGLLLKQD--GERFSRVETPYAGTLFGAVGKPGVLLVYGLRGHAYRSTDGGRQWQ 250
Query: 213 PHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
P + V + G DG LWL + G L LS+ G + F VP +RG
Sbjct: 251 PVSTGVNTSLTAAGVDRDGQLWLASQAGDLLLSRDDGAS--FSPVPQSARG 299
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
+G R +L + D G W +P + + N++SF E GW VG ++LH+ D
Sbjct: 58 VGPRGHILYSDDHGAHWQQAQVPVSAD------LNAVSFATPEVGWAVGHDGVVLHSRDG 111
Query: 192 GESWERI----PLSSQLPG 206
G W++ L+ QLPG
Sbjct: 112 GVHWQKQLDGRALAEQLPG 130
>gi|398893816|ref|ZP_10646325.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM55]
gi|398183438|gb|EJM70921.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM55]
Length = 363
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 94/206 (45%), Gaps = 38/206 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIP-SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDA 191
+G R +L + D G W ++P SA+ N+ + +GW VG ++LH+SDA
Sbjct: 61 VGQRGHILFSDDSGNHWQQAAVPVSADLTAVNFPTTT------QGWAVGNDGVVLHSSDA 114
Query: 192 GESWERIPLSSQLPGDM--AFWQPHNRAVAR-RIQNMGWRADGGLWLLVRGGGLFLSKGT 248
G +W++ QL G + H A+A N W L +++G
Sbjct: 115 GATWQK-----QLDGRQIGSLLVKHYTALASAEPGNEQWP-------------LLVAEGQ 156
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIA 306
+ E+ + P +LDV + ++ + G ++L+T +GG+TW +++ +
Sbjct: 157 RLAEQGADKP-------LLDVWFANEKLGYVVGVFNLILRTEDGGQTWTPFQDRTDNPQG 209
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQY 332
+L ++ + ++ G G+LL++
Sbjct: 210 FHLNAIASTGDGL-YIAGEQGLLLKW 234
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F + L G+++G +L T+DGG+TW P + + F+ N+I+ G
Sbjct: 167 LLDVWFANEKL--GYVVGVFNLILRTEDGGQTWTPFQDRTDNPQGFH--LNAIASTGDGL 222
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAFWQPHNRAVARRIQNMGWR 228
+I G+ +LL D + + +P Q PG++ + + W
Sbjct: 223 YIAGEQGLLLKWDDNNQRFVAVPTPYQGSFFGVLGKPGEVLVYGLRGNVLRSTDGGQSWT 282
Query: 229 A-DGGLW---------------LLVRGGGLFLSKGTGITEEFEEVP 258
A D GL L +GG + +S+GTG + P
Sbjct: 283 ALDTGLHVSITAGLIDARGNYRLFTQGGQMLVSQGTGAQLHLVQRP 328
>gi|167590228|ref|ZP_02382616.1| glycosyl hydrolase, BNR repeat-containing protein [Burkholderia
ubonensis Bu]
Length = 280
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D HG+ +G +L T DGG+TW + I ++ ++ F+ I ++G VG +++
Sbjct: 51 DAQHGWAVGQWGVILATADGGETWEKQRIDASVDQPL---FSVIFTNARDGIAVGLWSLM 107
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS 245
L T D G +W R L P R + ++ G L+++ G + S
Sbjct: 108 LQTHDGGRTWTRTTLPK---------PPGGGKADRNLYHIFADRQGALYIVSEQGTVLKS 158
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-SGVLLKTTNGGKTW 296
G + +Q+ G G L G D GG G L ++++GG TW
Sbjct: 159 TDGGANWRY----LQTGGKGSLWAGVAMPDGRIVVGGLLGSLFQSSDGGATW 206
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + VPV + + + + WA G GV+L T +GG+TW +
Sbjct: 20 GVILLSDDDGRTWRQSRRVPVSAT---LSAITFADAQHGWAVGQWGVILATADGGETWEK 76
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++ ++ L+SV F N + G +G ++LQ
Sbjct: 77 QRIDASVDQPLFSVIFTNARDGIAVGLWSLMLQ 109
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 133 LGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
+G +L + D G+TW R +P + ++I+F + GW VG+ ++L T+D
Sbjct: 16 VGEHGVILLSDDDGRTWRQSRRVP------VSATLSAITFADAQHGWAVGQWGVILATAD 69
Query: 191 AGESWER 197
GE+WE+
Sbjct: 70 GGETWEK 76
>gi|443471556|ref|ZP_21061618.1| BNR repeat protein [Pseudomonas pseudoalcaligenes KF707]
gi|442901627|gb|ELS27447.1| BNR repeat protein [Pseudomonas pseudoalcaligenes KF707]
Length = 350
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 39/202 (19%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G R +L + D G++W +P + + ++ F +GW VG ++LH+ D
Sbjct: 55 VGQRGHILYSDDQGRSWNQARVPVSSD------LTAVHFPTPTQGWAVGHDGVVLHSDDG 108
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNM-GWRADGGLWLLVRGGGLFLSKGTGI 250
G SW R QL G R + R +Q+ RAD W L +G +
Sbjct: 109 GASWVR-----QLDG---------RQIGRLVQDFYASRADAAQW---------LDEGRRL 145
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR-EKAADNIAANL 309
++ + P LD+ + + + G ++ +T +GG++W DN +A
Sbjct: 146 EQDGADKP-------FLDLWFSDERNGFVVGAFNLIFRTRDGGQSWEPWLDRTDNPSAYH 198
Query: 310 YSVKFINEKKGFVLGNDGVLLQ 331
+ + ++ G G+LL+
Sbjct: 199 LGAIASDGEGLYIAGEQGLLLR 220
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP----RSIPSAEEEDFNYRFNSISFK 172
LD+ F D +GF++G + T+DGG++W P PSA Y +I+
Sbjct: 154 FLDLWF--SDERNGFVVGAFNLIFRTRDGGQSWEPWLDRTDNPSA------YHLGAIASD 205
Query: 173 GKEGWIVGKPAILLHTSDAGE 193
G+ +I G+ +LL AGE
Sbjct: 206 GEGLYIAGEQGLLLRLDPAGE 226
>gi|393762015|ref|ZP_10350644.1| BNR repeat-containing protein [Alishewanella agri BL06]
gi|392607047|gb|EIW89929.1| BNR repeat-containing protein [Alishewanella agri BL06]
Length = 348
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 105/237 (44%), Gaps = 21/237 (8%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS-IPSAEEEDF 162
W++ +PV +L + F D ++G+ +G T+L ++DGGKTW + +P ++
Sbjct: 76 WQQAQVPVQS--LLTSVYFT--DADYGWAVGHDATILHSQDGGKTWQIQQFLPETDKPLM 131
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER---IPLSS----QLPGDMAFWQPHN 215
+ F F + G VG + T+D G +W++ + L+S + ++ P
Sbjct: 132 DVYF----FDRQRGMAVGAYGMFFTTNDGGNTWDKAFYLSLASVDDQEFLAELEETDPEG 187
Query: 216 RAVARR--IQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
+ R + + G +L+ G F++ E + + G + D+
Sbjct: 188 YLLERESVLPHFNRLIVAGQQILMVGEAGFVAISEDAGESWRRLEEFYNG-SLFDIHRTQ 246
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
AG G L ++T+ G++W + A ++A L S+ + K ++ GN G LL
Sbjct: 247 AGTLLVAGLRGNLFRSTDNGESW--QDIALPVSATLNSIFEDDSGKLYLAGNAGALL 301
>gi|453043426|gb|EME91157.1| hypothetical protein H123_26028 [Pseudomonas aeruginosa PA21_ST175]
Length = 320
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 66/259 (25%)
Query: 103 AWERVYIPVDPGVVLLD---------------------IAFVPDDLNHGFLLGTRQTLLE 141
A ERV D GVVLL ++FV D HG+ +G +L
Sbjct: 48 AGERVVAVGDHGVVLLSDDQGRQWRQARSVPLSTPLTGVSFV--DARHGWAVGHWGAILS 105
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLS 201
T DGG++W + + S E+ F F ++G VG +++L T D G++W PL
Sbjct: 106 TADGGESWQVQRLSSEEDRPL---FAVHFFDARQGVAVGLWSLVLTTEDGGKTWTEQPL- 161
Query: 202 SQLP------------------GDMAFWQPHNRAVARRIQNMGWR-----ADGGLW---- 234
Q P G + H + + Q WR +G LW
Sbjct: 162 -QAPPGAKRADLNLMGLFADNHGTLYATAEHGQVLRSDDQGKNWRYLDTGYEGTLWSGAV 220
Query: 235 -----LLVRGGGLFLSKGTGITEEFEEVPVQSRG--FGILDVGYRSQDEAWAAGGSGVLL 287
LL+ G L +G+ + F VP Q +G I G R A G G+ +
Sbjct: 221 LADGRLLLGGQRGTLLQGSADGKAFRRVPTQGKGSVTSIAVAGAR----ILAVGLDGLKV 276
Query: 288 KTTNGGKTWIREKAADNIA 306
++ +GG ++ +AD ++
Sbjct: 277 RSRDGGNSFQEAPSADGLS 295
>gi|399004270|ref|ZP_10706901.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM18]
gi|398120145|gb|EJM09814.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM18]
Length = 369
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 93/240 (38%), Gaps = 60/240 (25%)
Query: 109 IPVDPGV--------VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE 160
+PV P + V+L +A L +G R ++ + D G TW S P
Sbjct: 39 LPVQPAITSAMAAQSVMLSVARAGQRL---VAVGERGFIIVSDDNGSTWKQVSSP----- 90
Query: 161 DFNYRFNSISFKGK-EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAF---WQPHNR 216
+ + F + +GW VG ++LH+ D G SW S QL G A Q +R
Sbjct: 91 -VSMTLVKVRFIDELQGWAVGHAGVVLHSQDGGLSW-----SKQLDGVQAADIELQEASR 144
Query: 217 AVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDE 276
+ + Q L++ + +E + P +LDV +
Sbjct: 145 GIDEQAQER------------------LAQARQLVDEGPDKP-------LLDVLFLDARN 179
Query: 277 AWAAGGSGVLLKTTNGGKTW--IREKAADNIAANLYSVKFINEKKG---FVLGNDGVLLQ 331
W G G+ T +GG W IR + + +LYS+ E+ G FV G G LL+
Sbjct: 180 GWVVGAYGLAFVTHDGGLNWQSIRSRLDNPNGLHLYSI----ERTGTDLFVAGEQGTLLR 235
>gi|421174673|ref|ZP_15632387.1| hypothetical protein PACI27_2911 [Pseudomonas aeruginosa CI27]
gi|404533793|gb|EKA43584.1| hypothetical protein PACI27_2911 [Pseudomonas aeruginosa CI27]
Length = 320
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 93/224 (41%), Gaps = 45/224 (20%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
L ++FV D HG+ +G +L T DGG++W + + S E+ F F ++G
Sbjct: 83 LTGVSFV--DARHGWAVGHWGAILSTADGGESWQVQRLSSEEDRPL---FAVHFFDARQG 137
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLP------------------GDMAFWQPHNRAV 218
VG +++L T D G++W PL Q P G + H + +
Sbjct: 138 VAVGLWSLVLTTEDGGKTWTEQPL--QAPPGAKRADLNLMGLFADNHGSLYATAEHGQVL 195
Query: 219 ARRIQNMGWR-----ADGGLW---------LLVRGGGLFLSKGTGITEEFEEVPVQSRG- 263
Q WR +G LW LL+ G L +G+ + F VP Q +G
Sbjct: 196 RSDDQGKNWRYLDTGYEGTLWSGAVLADGRLLLGGQRGTLLQGSADGKAFRRVPTQGKGS 255
Query: 264 -FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
I G R A G G+ +++ +GG ++ +AD ++
Sbjct: 256 VTSIAVAGAR----VLAVGLDGLKVRSRDGGNSFQEAPSADGLS 295
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 133 LGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
+G +L + D G+ W RS+P + +SF + GW VG +L T+D
Sbjct: 55 VGNHGVVLLSDDQGRQWRQARSVP------LSTPLTGVSFVDARHGWAVGHWGAILSTAD 108
Query: 191 AGESWERIPLSSQ 203
GESW+ LSS+
Sbjct: 109 GGESWQVQRLSSE 121
>gi|422645796|ref|ZP_16708931.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330959345|gb|EGH59605.1| BNR/Asp-box repeat-containing protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 349
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S + +W + + + LLD+ F DL++G +G LL T DGG+ W + I
Sbjct: 123 SSDGGKSWSKQFEDLKREAPLLDVWF--KDLDNGLAIGAYGALLSTHDGGQHW--QDISD 178
Query: 157 AEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQP 213
+ + Y N I+ G +IVG+ + +SD G++WE++ P L G QP
Sbjct: 179 RLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFRSSDEGQTWEKLEGPYQGSLFGVTGTAQP 238
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 118/300 (39%), Gaps = 48/300 (16%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGV--VLLDIAFVPDD 126
R + TL + LAAT L P + ++ I +LLD+A
Sbjct: 10 RLCAGMSLTLLMGCPLAATLALASDPVPTAANVADTSGYAIESAKAARGLLLDVAHAGAR 69
Query: 127 LNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAIL 185
L ++G +L + D GKTW +P+ + ++ F ++ GW VG A +
Sbjct: 70 L---VVVGDHGHILYSDDQGKTWLQARVPTRQ------LLTAVFFVDEQHGWAVGHDAQI 120
Query: 186 LHTSDAGESWER--------IPLSSQLPGDM----------AFWQPHN-----RAVARRI 222
L +SD G+SW + PL D+ A H+ + ++ R+
Sbjct: 121 LVSSDGGKSWSKQFEDLKREAPLLDVWFKDLDNGLAIGAYGALLSTHDGGQHWQDISDRL 180
Query: 223 QN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQ 274
N + D GL+++ G +F S G T E E P Q FG+ G
Sbjct: 181 DNEDQYHLNGIAQVKDAGLFIVGEAGSMFRSSDEGQTWEKLEGPYQGSLFGV--TGTAQP 238
Query: 275 DEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G L ++++ G TW I K A + L S + + ++GN G +++
Sbjct: 239 SALLAYGLRGNLFRSSDFGDTWQPIELKGARGPVEFGLASATLLADGSLVLVGNGGSVMR 298
>gi|334132855|ref|ZP_08506610.1| Glycosyl hydrolase, BNR repeat-containing protein
[Methyloversatilis universalis FAM5]
gi|333441765|gb|EGK69737.1| Glycosyl hydrolase, BNR repeat-containing protein
[Methyloversatilis universalis FAM5]
Length = 326
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
+S++ +W R + D + L + D +GF G T++ T DGG TW R
Sbjct: 148 RSDDQGKSWVRTDLQEDLQITTLQMV----DEQNGFATGEFGTVVVTTDGGDTWTKRGAL 203
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWE 196
AE Y + ++ EGW+ G L+HT+D G +W+
Sbjct: 204 PAE----FYPYAALFVSATEGWVSGLAGQLVHTTDGGLTWQ 240
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 127 LNH-GFLLGTRQTLLETKDGGKTWAPR-SIPSAEEEDFNYRFNSISFKGKEG--WIVG-K 181
+NH GF L + G T AP S AE + R++SI G + G +
Sbjct: 1 MNHYGFRALAVCAALASLASGCTQAPDLSAARAEAQKPVQRYDSIQALAAHGDRVVAGTR 60
Query: 182 PAILLHTSDAGESWERIPLS--SQLPG-DMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
+L ++D G+SW+R L+ S + G D+ P R +A W AD L
Sbjct: 61 SGAVLVSADGGQSWQREALAGPSSITGIDVC---PDGRFIAIDFYRKLWTADAKL----- 112
Query: 239 GGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
+G T E P + L V Q W AG +++++ + GK+W+R
Sbjct: 113 ---------SGWTALPLEAPHTA-----LAVHCDRQGRWWVAGTGALIVRSDDQGKSWVR 158
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+++ + +++ ++E+ GF G G ++
Sbjct: 159 TDLQEDL--QITTLQMVDEQNGFATGEFGTVV 188
>gi|339487520|ref|YP_004702048.1| glycosyl hydrolase [Pseudomonas putida S16]
gi|338838363|gb|AEJ13168.1| glycosyl hydrolase [Pseudomonas putida S16]
Length = 323
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 32/171 (18%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D +G+ +G LL T DGG+ W P S + + S++ G E
Sbjct: 129 LLDVWF--SDARNGYAVGVFNLLLRTVDGGEHWQPWLDHSDNPQGLH--LTSLAAVGDEL 184
Query: 177 WIVGKPAILLHTSDAGESWERI--PLSSQL------PGDMAF----------------WQ 212
+I G+ +LL GE + R+ P + L PG + WQ
Sbjct: 185 YITGEQGLLLKQD--GERFSRVQTPYAGTLFGAVGKPGVLLVYGLRGHAYRSTDGGRQWQ 242
Query: 213 PHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
P + V + G DG LWL + G L LS+ G + F VP +RG
Sbjct: 243 PVSTGVNTSLTAAGVDRDGQLWLASQAGDLLLSRDDGAS--FSPVPQSARG 291
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 59/205 (28%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
+G R +L + D G W +P + + N++SF E GW VG ++LH+ D
Sbjct: 50 VGPRGHILYSDDHGAHWQQAQVPVSAD------LNAVSFATPELGWAVGHDGVVLHSRDG 103
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G W++ QL G RA+A
Sbjct: 104 GVHWQK-----QLDG---------RALA-------------------------------- 117
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANL 309
E++P +LDV + +A G +LL+T +GG+ W + + + +L
Sbjct: 118 ---EQLPGTGSDNALLDVWFSDARNGYAVGVFNLLLRTVDGGEHWQPWLDHSDNPQGLHL 174
Query: 310 YSVKFINEKKGFVLGNDGVLLQYLG 334
S+ + ++ ++ G G+LL+ G
Sbjct: 175 TSLAAVGDEL-YITGEQGLLLKQDG 198
>gi|398878557|ref|ZP_10633674.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM67]
gi|398199588|gb|EJM86525.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM67]
Length = 358
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 38/206 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIP-SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDA 191
+G R +L + D GK W ++P SA+ N+ + +GW VG ++LH+SDA
Sbjct: 60 VGQRGHILFSDDAGKHWQQAAVPVSADLTAVNFPTTT------QGWAVGNDGVVLHSSDA 113
Query: 192 GESWERIPLSSQLPGDM--AFWQPHNRAVAR-RIQNMGWRADGGLWLLVRGGGLFLSKGT 248
G +W++ QL G A H A+A N W L +++G
Sbjct: 114 GATWQK-----QLDGRQIGALLVKHYTALASAEPGNEQWP-------------LLVAEGQ 155
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIA 306
+ E+ + P +LD + + + G ++L+T +GG++W +++ +
Sbjct: 156 RLIEQGADKP-------LLDTWFANDKVGYVVGVFNLILRTEDGGQSWTPFQDRTDNPQG 208
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQY 332
+L ++ + ++ G G+LL++
Sbjct: 209 FHLNAIASTGDAL-YIAGEQGLLLKW 233
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 28/174 (16%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD F D + G+++G +L T+DGG++W P + + F+ N+I+ G
Sbjct: 166 LLDTWFANDKV--GYVVGVFNLILRTEDGGQSWTPFQDRTDNPQGFH--LNAIASTGDAL 221
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAFWQPHNRAVARRIQNMGWR 228
+I G+ +LL D + + +P Q PG+ + + W
Sbjct: 222 YIAGEQGLLLKWDDNTQRFSAVPTPYQGSFFGVLGKPGEALVYGLRGNVLRSTDGGQNWT 281
Query: 229 A-DGGLW---------------LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGI 266
A D GL L GG + +S+GTG PV + G+
Sbjct: 282 ALDTGLHVSITAGLIDARGDYRLFTLGGQMLVSQGTGAQLHLLRQPVPTPVAGV 335
>gi|295688171|ref|YP_003591864.1| hypothetical protein Cseg_0739 [Caulobacter segnis ATCC 21756]
gi|295430074|gb|ADG09246.1| conserved hypothetical protein [Caulobacter segnis ATCC 21756]
Length = 343
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 23/161 (14%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPA----ILLHT 188
G L T DGGK WA ++ +D N ++SI+F + G+I+G P +L+T
Sbjct: 102 GQASQLWRTTDGGKRWAQVTV----NQDPNGFWDSIAFVDDRRGFILGDPTEGRFTVLYT 157
Query: 189 SDAGESWERIPLSSQLP---GDMAFWQPHNRAVARRIQNMGWRADGG----LWLLVRGGG 241
+DAG++W R+P P G+ AF + R + + G ++L GGG
Sbjct: 158 ADAGKTWARLPPEGVPPAADGEGAFAASNGCVAIGRHGQVAFCTGGAGKARVYLSRGGGG 217
Query: 242 LFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG 282
+F++ T +P + G + + + E W GG
Sbjct: 218 VFVALDT-------PIPADAPSKGAFAIAFGKRGELWVCGG 251
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 82 ISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGT----RQ 137
++++A G Q ++ + W +V + DP IAFV D GF+LG R
Sbjct: 95 LAMSAGPGQASQLWRTTDGGKRWAQVTVNQDPNGFWDSIAFVDD--RRGFILGDPTEGRF 152
Query: 138 TLLETKDGGKTWA---PRSIPSAEEEDFNY 164
T+L T D GKTWA P +P A + + +
Sbjct: 153 TVLYTADAGKTWARLPPEGVPPAADGEGAF 182
>gi|422675932|ref|ZP_16735270.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae pv.
aceris str. M302273]
gi|330973644|gb|EGH73710.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae pv.
aceris str. M302273]
Length = 348
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DL++G +G LL T DGG+ W
Sbjct: 118 QVLASSDGGKSWNKQFEDLKREAPLLDVWF--KDLDNGLAIGAYGLLLSTADGGQHWEDV 175
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N I+ G +IVG+ + + D G++WE+I P L G +
Sbjct: 176 S-DRLDNED-QYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEKIAGPYQGSLFGVIG 233
Query: 210 FWQP 213
QP
Sbjct: 234 TAQP 237
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L ++G +L + D G TW+ +P+ + ++ F ++
Sbjct: 58 LLLDVAHAGARL---VVVGDHGHILLSDDQGMTWSQARVPTRQ------LLTAVFFVDEQ 108
Query: 176 -GWIVGKPAILLHTSDAGESWER--------IPLSSQLPGDM---------------AFW 211
GW VG A +L +SD G+SW + PL D+ A
Sbjct: 109 HGWAVGHDAQVLASSDGGKSWNKQFEDLKREAPLLDVWFKDLDNGLAIGAYGLLLSTADG 168
Query: 212 QPHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
H V+ R+ N + D GL+++ G +F S+ G T E P Q
Sbjct: 169 GQHWEDVSDRLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEKIAGPYQGSL 228
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ +G A G G L ++++ G +W I K A + L S + +
Sbjct: 229 FGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASATLLADGSL 286
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 287 VLVGNGGSVMR 297
>gi|398885936|ref|ZP_10640833.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM60]
gi|398191171|gb|EJM78369.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM60]
Length = 358
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 38/206 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIP-SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDA 191
+G R +L + D GK W ++P SA+ N+ + +GW VG ++LH+SDA
Sbjct: 60 VGQRGHILFSDDAGKHWQQAAVPVSADLTAVNFPTTT------QGWAVGNDGVVLHSSDA 113
Query: 192 GESWERIPLSSQLPGDM--AFWQPHNRAVAR-RIQNMGWRADGGLWLLVRGGGLFLSKGT 248
G +W++ QL G A H A+A N W L +++G
Sbjct: 114 GATWQK-----QLDGRQIGALLVKHYTALASAEPGNEQWP-------------LLVAEGQ 155
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIA 306
+ E+ + P +LD + + + G ++L+T +GG++W +++ +
Sbjct: 156 RLIEQGADKP-------LLDTWFANDKVGYVVGVFNLILRTEDGGQSWTPFQDRTDNPQG 208
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQY 332
+L ++ + ++ G G+LL++
Sbjct: 209 FHLNAIASTGDAL-YIAGEQGLLLKW 233
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 28/174 (16%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD F D + G+++G +L T+DGG++W P + + F+ N+I+ G
Sbjct: 166 LLDTWFANDKV--GYVVGVFNLILRTEDGGQSWTPFQDRTDNPQGFH--LNAIASTGDAL 221
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAFWQPHNRAVARRIQNMGWR 228
+I G+ +LL D + + +P Q PG+ + + W
Sbjct: 222 YIAGEQGLLLKWDDNTQRFSAVPTPYQGSFFGVLGKPGEALVYGLRGNVLRSTDGGQNWT 281
Query: 229 A-DGGLW---------------LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGI 266
A D GL L +GG + +S+GTG PV + G+
Sbjct: 282 ALDTGLHVSITAGLIDARGDYRLFTQGGQMLVSQGTGAQLHLLRQPVSTPVAGV 335
>gi|148548930|ref|YP_001269032.1| hypothetical protein Pput_3724 [Pseudomonas putida F1]
gi|148512988|gb|ABQ79848.1| hypothetical protein Pput_3724 [Pseudomonas putida F1]
Length = 346
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 105/261 (40%), Gaps = 34/261 (13%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S S+ + + + RQ + TA L G Q S + + W + + +
Sbjct: 75 SDDQGSTWTQARVPTRQLL--TAVFFLDDKRGWAVGHDAQILASSDGGATWSKQFEDLAR 132
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
LLD++F+ D HGF +G LLET DGG+ W + + + N I+
Sbjct: 133 EAPLLDVSFL--DAQHGFAVGAYGALLETTDGGQHW--QDVAERLDNPDQLHLNGIAHVR 188
Query: 174 KEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD 230
G +IVG+ + ++D G++W ++ P L G + +P
Sbjct: 189 DAGLFIVGEQGGMFRSTDNGQTWAKVQGPYEGSLFGVIGTARPQT--------------- 233
Query: 231 GGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRG---FGILDVGYRSQDEAWAAGGSGV 285
LL G G LF S G + + E+ +RG FG+ G G
Sbjct: 234 ----LLAYGLRGNLFRSSDFGDSWQPIELKA-ARGTLEFGLAGATLVDDGSLVLVGNGGS 288
Query: 286 LLKTTNGGKTWIREKAADNIA 306
+L++T+ G+T+ AD +A
Sbjct: 289 VLRSTDDGQTFSVYNRADRLA 309
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 43/235 (18%)
Query: 132 LLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
++G R +L + D G TW +P+ + ++ F K GW VG A +L +SD
Sbjct: 65 VVGDRGHILFSDDQGSTWTQARVPTRQ------LLTAVFFLDDKRGWAVGHDAQILASSD 118
Query: 191 AGESWERI--PLSSQLP-GDMAFWQP--------------------HNRAVARRIQN--- 224
G +W + L+ + P D++F H + VA R+ N
Sbjct: 119 GGATWSKQFEDLAREAPLLDVSFLDAQHGFAVGAYGALLETTDGGQHWQDVAERLDNPDQ 178
Query: 225 -----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
+ D GL+++ GG+F S G T + P + FG+ +G A
Sbjct: 179 LHLNGIAHVRDAGLFIVGEQGGMFRSTDNGQTWAKVQGPYEGSLFGV--IGTARPQTLLA 236
Query: 280 AGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++++ G +W I KAA + L +++ ++GN G +L+
Sbjct: 237 YGLRGNLFRSSDFGDSWQPIELKAARGTLEFGLAGATLVDDGSLVLVGNGGSVLR 291
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 23/166 (13%)
Query: 170 SFKGKEGWIVGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
+ GK +VG +L + D G +W R+P L AV Q +
Sbjct: 57 THAGKRLVVVGDRGHILFSDDQGSTWTQARVPTRQLLTAVFFLDDKRGWAVGHDAQILAS 116
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLL 287
G W +++FE++ +R +LDV + +A G G LL
Sbjct: 117 SDGGATW----------------SKQFEDL---AREAPLLDVSFLDAQHGFAVGAYGALL 157
Query: 288 KTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+TT+GG+ W + E+ + +L + + + F++G G + +
Sbjct: 158 ETTDGGQHWQDVAERLDNPDQLHLNGIAHVRDAGLFIVGEQGGMFR 203
>gi|398844002|ref|ZP_10601113.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM84]
gi|398255009|gb|EJN40055.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM84]
Length = 341
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 9/150 (6%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
RQ + TA L G Q S + + W R + + LLDI F+ D
Sbjct: 85 RQLL--TAVFFLDDKRGWAVGHDAQILVSTDGGATWTRQFEDLSREAPLLDITFL--DAQ 140
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLH 187
HGF +G LLET DGG+ W + + + N I+ G +IVG+ +
Sbjct: 141 HGFAVGAYGALLETADGGQHW--QEVGDRLDNPDQLHLNGIAVVKDAGLFIVGEQGSMYR 198
Query: 188 TSDAGESWERI--PLSSQLPGDMAFWQPHN 215
+SD G++W ++ P L G + H
Sbjct: 199 SSDNGQTWTKLEGPYEGSLFGVIGTAHAHT 228
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
+L+D A L ++G R +L + D GKTW +P+ + ++ F K
Sbjct: 47 LLIDAAHAGQRL---VVVGDRGHILFSDDQGKTWTQARVPTRQ------LLTAVFFLDDK 97
Query: 175 EGWIVGKPAILLHTSDAGESWERI--PLSSQLP-GDMAFWQP------------------ 213
GW VG A +L ++D G +W R LS + P D+ F
Sbjct: 98 RGWAVGHDAQILVSTDGGATWTRQFEDLSREAPLLDITFLDAQHGFAVGAYGALLETADG 157
Query: 214 --HNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
H + V R+ N + D GL+++ G ++ S G T E P +
Sbjct: 158 GQHWQEVGDRLDNPDQLHLNGIAVVKDAGLFIVGEQGSMYRSSDNGQTWTKLEGPYEGSL 217
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKG 320
FG+ +G A G G L ++T+ G +W I KAA + L S +++
Sbjct: 218 FGV--IGTAHAHTLLAYGLRGNLFRSTDFGDSWQPIALKAARGTLEFGLASATLLDDGSL 275
Query: 321 FVLGNDGVLLQ 331
++GN G +L+
Sbjct: 276 VLVGNGGSVLR 286
>gi|66044945|ref|YP_234786.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae pv.
syringae B728a]
gi|63255652|gb|AAY36748.1| Glycosyl hydrolase, BNR repeat protein [Pseudomonas syringae pv.
syringae B728a]
Length = 369
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DL++G +G LL T DGG+ W
Sbjct: 139 QVLASSDGGKSWNKQFEDLKREAPLLDVWF--KDLDNGLAIGAYGLLLSTADGGQHWEDV 196
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N I+ G +IVG+ + + D G++WE+I P L G +
Sbjct: 197 S-DRLDNED-QYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEKIDGPYQGSLFGVIG 254
Query: 210 FWQP 213
QP
Sbjct: 255 TAQP 258
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 102/251 (40%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L ++G +L + D G TW+ +P+ + ++ F ++
Sbjct: 79 LLLDVAHAGARL---VVVGDHGHILLSDDQGMTWSQARVPTRQ------LLTAVFFVDEQ 129
Query: 176 -GWIVGKPAILLHTSDAGESWER--------IPLSSQLPGDM---------------AFW 211
GW VG A +L +SD G+SW + PL D+ A
Sbjct: 130 HGWAVGHDAQVLASSDGGKSWNKQFEDLKREAPLLDVWFKDLDNGLAIGAYGLLLSTADG 189
Query: 212 QPHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
H V+ R+ N + D GL+++ G +F S+ G T E + P Q
Sbjct: 190 GQHWEDVSDRLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEKIDGPYQGSL 249
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ +G A G G L ++++ G +W I K A + L S +
Sbjct: 250 FGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASATLLANGSL 307
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 308 VLVGNGGSVMR 318
>gi|398944217|ref|ZP_10671150.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM41(2012)]
gi|398158452|gb|EJM46799.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM41(2012)]
Length = 357
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 44/209 (21%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G+ W ++P + + N++SF +GW VG ++LH++DA
Sbjct: 60 VGQRGHILFSDDAGQHWQQAAVPVSAD------LNAVSFPSATQGWAVGGDGVVLHSNDA 113
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTG-- 249
G +W + QL G R I LLV+ G +S G
Sbjct: 114 GATWRK-----QLDG-------------REIGA----------LLVKHYGALVSAEPGNE 145
Query: 250 ----ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAAD 303
+ E E + Q +LDV + + + G ++L+T +GG++W +++ +
Sbjct: 146 QWPLLVAEGERLVAQGADKPLLDVWFANDRLGYVVGVFNLILRTEDGGQSWTPFQDRTDN 205
Query: 304 NIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+L ++ + ++ G G+LL++
Sbjct: 206 PQGFHLNAIASTGDAL-YIAGEQGLLLKW 233
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 32/171 (18%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D L G+++G +L T+DGG++W P + + F+ N+I+ G
Sbjct: 166 LLDVWFANDRL--GYVVGVFNLILRTEDGGQSWTPFQDRTDNPQGFH--LNAIASTGDAL 221
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAF----------------WQ 212
+I G+ +LL +D + + + Q PG+ W
Sbjct: 222 YIAGEQGLLLKWNDTQQRFAAVQTPYQGSFFGVLGKPGEALVYGLRGNVLRSTDGGLSWT 281
Query: 213 PHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT----EEFEEVPV 259
P + + I A G L +GG + +S+G G ++ E VPV
Sbjct: 282 PQDSGLRVSITAGIVDAHGDYRLFTQGGQMLVSQGAGAQMHWLQQAEPVPV 332
>gi|422640350|ref|ZP_16703777.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae Cit
7]
gi|330952741|gb|EGH53001.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae Cit
7]
Length = 334
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DL++G +G LL T DGG+ W
Sbjct: 104 QVLASSDGGKSWSKQFEDLKREAPLLDVWF--KDLDNGLAIGAYGLLLSTADGGQHWEDV 161
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N I+ G +IVG+ + + D G++WE+I P L G +
Sbjct: 162 S-DRLDNED-QYHLNGITQAKDAGLFIVGEAGSMFRSRDEGQTWEKIDGPYQGSLFGVIG 219
Query: 210 FWQP 213
QP
Sbjct: 220 TAQP 223
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L +G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 44 LLLDVAHAGARL---VAVGDHGHILLSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 94
Query: 176 -GWIVGKPAILLHTSDAGESWER--------IPLSSQLPGDM---------------AFW 211
GW VG A +L +SD G+SW + PL D+ A
Sbjct: 95 HGWAVGHDAQVLASSDGGKSWSKQFEDLKREAPLLDVWFKDLDNGLAIGAYGLLLSTADG 154
Query: 212 QPHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
H V+ R+ N + D GL+++ G +F S+ G T E + P Q
Sbjct: 155 GQHWEDVSDRLDNEDQYHLNGITQAKDAGLFIVGEAGSMFRSRDEGQTWEKIDGPYQGSL 214
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ +G A G G L ++++ G +W + K A I L S + +
Sbjct: 215 FGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSWQPVELKGARGPIEFGLASATLLADGSL 272
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 273 VLVGNGGSVMR 283
>gi|398859154|ref|ZP_10614835.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM79]
gi|398237586|gb|EJN23336.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM79]
Length = 362
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D GK W ++P + + N++SF +GW VG ++LH++DA
Sbjct: 60 VGQRGHILYSDDVGKHWQQAAVPVSAD------LNAVSFPSATQGWAVGGDGVVLHSNDA 113
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTG-- 249
G +W + QL G R I LLV+ G S G
Sbjct: 114 GATWRK-----QLDG-------------REIGA----------LLVKHYGALASAEPGNE 145
Query: 250 ----ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAAD 303
+ E E + Q +LDV + + + G ++L+T +GG++W +++ +
Sbjct: 146 QWPLLVAEGERLMAQGADKPLLDVWFANDRLGYVVGVFNLILRTEDGGQSWTPFQDRTDN 205
Query: 304 NIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+L ++ + ++ G G+LL++
Sbjct: 206 PQGFHLNAIASTGDAL-YIAGEQGLLLKW 233
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 28/157 (17%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D L G+++G +L T+DGG++W P + + F+ N+I+ G
Sbjct: 166 LLDVWFANDRL--GYVVGVFNLILRTEDGGQSWTPFQDRTDNPQGFH--LNAIASTGDAL 221
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAF----------------WQ 212
+I G+ +LL D + + + Q PG++ W
Sbjct: 222 YIAGEQGLLLKWDDTQQRFAAVQTPYQGSFFGVLGKPGEVLVYGLRGNVLRSTDGGLSWT 281
Query: 213 PHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTG 249
P + + I G L +GG + +S+GTG
Sbjct: 282 PLDSGLRVSITAGLVDGRGNYRLFTQGGQMLVSQGTG 318
>gi|395444588|ref|YP_006384841.1| hypothetical protein YSA_01749 [Pseudomonas putida ND6]
gi|388558585|gb|AFK67726.1| hypothetical protein YSA_01749 [Pseudomonas putida ND6]
Length = 326
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 105/261 (40%), Gaps = 34/261 (13%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S S+ + + + RQ + TA L G Q S + + W + + +
Sbjct: 55 SDDQGSTWTQARVPTRQLL--TAVFFLDDKRGWAVGHDAQILASSDGGATWSKQFEDLAR 112
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
LLD++F+ D HGF +G LLET DGG+ W + + + N I+
Sbjct: 113 EAPLLDVSFL--DAQHGFAVGAYGALLETTDGGQHW--QDVAERLDNPDQLHLNGIAHVR 168
Query: 174 KEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD 230
G +IVG+ + ++D G++W ++ P L G + +P
Sbjct: 169 DAGLFIVGEQGGMFRSTDNGQTWAKVQGPYEGSLFGVIGTARPQT--------------- 213
Query: 231 GGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRG---FGILDVGYRSQDEAWAAGGSGV 285
LL G G LF S G + + E+ +RG FG+ G G
Sbjct: 214 ----LLAYGLRGNLFRSSDFGDSWQPIELKA-ARGTLEFGLAGATLVDDGSLVLVGNGGS 268
Query: 286 LLKTTNGGKTWIREKAADNIA 306
+L++T+ G+T+ AD +A
Sbjct: 269 VLRSTDDGQTFSVYNRADRLA 289
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 43/235 (18%)
Query: 132 LLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
++G R +L + D G TW +P+ + ++ F K GW VG A +L +SD
Sbjct: 45 VVGDRGHILFSDDQGSTWTQARVPTRQ------LLTAVFFLDDKRGWAVGHDAQILASSD 98
Query: 191 AGESWERI--PLSSQLP-GDMAFWQP--------------------HNRAVARRIQN--- 224
G +W + L+ + P D++F H + VA R+ N
Sbjct: 99 GGATWSKQFEDLAREAPLLDVSFLDAQHGFAVGAYGALLETTDGGQHWQDVAERLDNPDQ 158
Query: 225 -----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
+ D GL+++ GG+F S G T + P + FG+ +G A
Sbjct: 159 LHLNGIAHVRDAGLFIVGEQGGMFRSTDNGQTWAKVQGPYEGSLFGV--IGTARPQTLLA 216
Query: 280 AGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++++ G +W I KAA + L +++ ++GN G +L+
Sbjct: 217 YGLRGNLFRSSDFGDSWQPIELKAARGTLEFGLAGATLVDDGSLVLVGNGGSVLR 271
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 23/166 (13%)
Query: 170 SFKGKEGWIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
+ GK +VG +L + D G +W R+P L AV Q +
Sbjct: 37 THAGKRLVVVGDRGHILFSDDQGSTWTQARVPTRQLLTAVFFLDDKRGWAVGHDAQILAS 96
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLL 287
G W +++FE++ +R +LDV + +A G G LL
Sbjct: 97 SDGGATW----------------SKQFEDL---AREAPLLDVSFLDAQHGFAVGAYGALL 137
Query: 288 KTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+TT+GG+ W + E+ + +L + + + F++G G + +
Sbjct: 138 ETTDGGQHWQDVAERLDNPDQLHLNGIAHVRDAGLFIVGEQGGMFR 183
>gi|319761733|ref|YP_004125670.1| hypothetical protein Alide_1017 [Alicycliphilus denitrificans BC]
gi|317116294|gb|ADU98782.1| hypothetical protein Alide_1017 [Alicycliphilus denitrificans BC]
Length = 1145
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 71/183 (38%), Gaps = 38/183 (20%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAI 184
D + +G L T DGG TW + A R +++F + G VG+
Sbjct: 159 DAQRAWAVGDGGLALATTDGGATWTQHATGVA-------RLYAVAFTSAQNGLAVGQGGA 211
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA----DGGLWLLVRGG 240
++ +SD G+SW R+ + A R + G +A DGG L+ G
Sbjct: 212 IVRSSDGGQSWARVDGGTT-------------ATLRAVMLNGAQALAAGDGGTLLVSNDG 258
Query: 241 GLFLSKGT-GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIRE 299
G S T G T + + R+ WAAG G LL T NGG TW +
Sbjct: 259 GATWSAATSGSTARLRALRM------------RNATTGWAAGDGGTLLATNNGGTTWTAQ 306
Query: 300 KAA 302
A
Sbjct: 307 PVA 309
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 81/207 (39%), Gaps = 33/207 (15%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D N+ ++ G LL + +GG W + + +I+ GW VG +
Sbjct: 78 DANNVWIAGEDGVLLVSSNGGGAW------TVADTGSTRHLRAIARAAATGWAVGDGGTI 131
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR-ADGGLWLLVR-GGGLF 243
T+DAG +W ++Q G + R VA W DGGL L GG +
Sbjct: 132 ARTTDAGATW-----AAQGSGTLQTL----RGVAAFDAQRAWAVGDGGLALATTDGGATW 182
Query: 244 LSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAAD 303
TG+ + V + S A G G ++++++GG++W R
Sbjct: 183 TQHATGVARLYA-------------VAFTSAQNGLAVGQGGAIVRSSDGGQSWARVDG-- 227
Query: 304 NIAANLYSVKFINEKKGFVLGNDGVLL 330
A L +V +N + G+ G LL
Sbjct: 228 GTTATLRAV-MLNGAQALAAGDGGTLL 253
>gi|330826513|ref|YP_004389816.1| hypothetical protein Alide2_3981 [Alicycliphilus denitrificans
K601]
gi|329311885|gb|AEB86300.1| hypothetical protein Alide2_3981 [Alicycliphilus denitrificans
K601]
Length = 1145
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 71/183 (38%), Gaps = 38/183 (20%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAI 184
D + +G L T DGG TW + A R +++F + G VG+
Sbjct: 159 DAQRAWAVGDGGLALATTDGGATWTQHATGVA-------RLYAVAFTSAQNGLAVGQGGA 211
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA----DGGLWLLVRGG 240
++ +SD G+SW R+ + A R + G +A DGG L+ G
Sbjct: 212 IVRSSDGGQSWARVDGGTT-------------ATLRAVMLNGAQALAAGDGGTLLVSNDG 258
Query: 241 GLFLSKGT-GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIRE 299
G S T G T + + R+ WAAG G LL T NGG TW +
Sbjct: 259 GATWSAATSGSTARLRALRM------------RNATTGWAAGDGGTLLATNNGGTTWTAQ 306
Query: 300 KAA 302
A
Sbjct: 307 PVA 309
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 81/207 (39%), Gaps = 33/207 (15%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D N+ ++ G LL + +GG W + + +I+ GW VG +
Sbjct: 78 DANNVWIAGEDGVLLVSSNGGGAW------TVADTGSTRHLRAIARAAATGWAVGDGGTI 131
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR-ADGGLWLLVR-GGGLF 243
T+DAG +W ++Q G + R VA W DGGL L GG +
Sbjct: 132 ARTTDAGATW-----AAQGSGTLQTL----RGVAAFDAQRAWAVGDGGLALATTDGGATW 182
Query: 244 LSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAAD 303
TG+ + V + S A G G ++++++GG++W R
Sbjct: 183 TQHATGVARLYA-------------VAFTSAQNGLAVGQGGAIVRSSDGGQSWARVDG-- 227
Query: 304 NIAANLYSVKFINEKKGFVLGNDGVLL 330
A L +V +N + G+ G LL
Sbjct: 228 GTTATLRAV-MLNGAQALAAGDGGTLL 253
>gi|397696315|ref|YP_006534198.1| hypothetical protein T1E_3568 [Pseudomonas putida DOT-T1E]
gi|397333045|gb|AFO49404.1| hypothetical protein T1E_3568 [Pseudomonas putida DOT-T1E]
Length = 346
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S S+ + + + RQ + TA L G Q S + + W + + +
Sbjct: 75 SDDQGSTWTQARVPTRQLL--TAVFFLDDKRGWAVGHDAQILASSDGGATWSKQFEDLAR 132
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
LLD+ F+ D HGF +G LLET DGG+ W + + + N I+
Sbjct: 133 EAPLLDVTFL--DAQHGFAVGAYGALLETTDGGQHW--QDVAERLDNPDQLHLNGIAHVR 188
Query: 174 KEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD 230
G +IVG+ + ++D G++W ++ P L G + +P
Sbjct: 189 DAGLFIVGEQGGMFRSTDNGQTWAKVQGPYEGSLFGVIGTARPQT--------------- 233
Query: 231 GGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRG---FGILDVGYRSQDEAWAAGGSGV 285
LL G G LF S G + + E+ +RG FG+ G G
Sbjct: 234 ----LLAYGLRGNLFRSSDFGDSWQPIELKA-ARGTLEFGLAGATLVDDGSLVLVGNGGS 288
Query: 286 LLKTTNGGKTWIREKAADNIA 306
+L++T+ G+T+ AD +A
Sbjct: 289 VLRSTDDGQTFSVYNRADRLA 309
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 43/235 (18%)
Query: 132 LLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
++G R +L + D G TW +P+ + ++ F K GW VG A +L +SD
Sbjct: 65 VVGDRGHILFSDDQGSTWTQARVPTRQ------LLTAVFFLDDKRGWAVGHDAQILASSD 118
Query: 191 AGESWERI--PLSSQLP-GDMAFWQP--------------------HNRAVARRIQN--- 224
G +W + L+ + P D+ F H + VA R+ N
Sbjct: 119 GGATWSKQFEDLAREAPLLDVTFLDAQHGFAVGAYGALLETTDGGQHWQDVAERLDNPDQ 178
Query: 225 -----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
+ D GL+++ GG+F S G T + P + FG+ +G A
Sbjct: 179 LHLNGIAHVRDAGLFIVGEQGGMFRSTDNGQTWAKVQGPYEGSLFGV--IGTARPQTLLA 236
Query: 280 AGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++++ G +W I KAA + L +++ ++GN G +L+
Sbjct: 237 YGLRGNLFRSSDFGDSWQPIELKAARGTLEFGLAGATLVDDGSLVLVGNGGSVLR 291
>gi|421522253|ref|ZP_15968895.1| hypothetical protein PPUTLS46_10467 [Pseudomonas putida LS46]
gi|402753872|gb|EJX14364.1| hypothetical protein PPUTLS46_10467 [Pseudomonas putida LS46]
Length = 346
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S S+ + + + RQ + TA L G Q S + + W + + +
Sbjct: 75 SDDQGSTWTQARVPTRQLL--TAVFFLDDKRGWAVGHDAQILASSDGGATWSKQFEDLAR 132
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
LLD+ F+ D HGF +G LLET DGG+ W + + + N I+
Sbjct: 133 EAPLLDVTFL--DAQHGFAVGAYGALLETTDGGQHW--QDVAERLDNPDQLHLNGIAHVR 188
Query: 174 KEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD 230
G +IVG+ + ++D G++W ++ P L G + +P
Sbjct: 189 DAGLFIVGEQGGMFRSTDNGQTWAKVQGPYEGSLFGVIGTARPQT--------------- 233
Query: 231 GGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRG---FGILDVGYRSQDEAWAAGGSGV 285
LL G G LF S G + + E+ +RG FG+ G G
Sbjct: 234 ----LLAYGLRGNLFRSSDFGDSWQPIELKA-ARGTLEFGLAGATLVDDGSLVLVGNGGS 288
Query: 286 LLKTTNGGKTWIREKAADNIA 306
+L++T+ G+T+ AD +A
Sbjct: 289 VLRSTDDGQTFSVYNRADRLA 309
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 43/235 (18%)
Query: 132 LLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
++G R +L + D G TW +P+ + ++ F K GW VG A +L +SD
Sbjct: 65 VVGDRGHILFSDDQGSTWTQARVPTRQ------LLTAVFFLDDKRGWAVGHDAQILASSD 118
Query: 191 AGESWERI--PLSSQLP-GDMAFWQP--------------------HNRAVARRIQN--- 224
G +W + L+ + P D+ F H + VA R+ N
Sbjct: 119 GGATWSKQFEDLAREAPLLDVTFLDAQHGFAVGAYGALLETTDGGQHWQDVAERLDNPDQ 178
Query: 225 -----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
+ D GL+++ GG+F S G T + P + FG+ +G A
Sbjct: 179 LHLNGIAHVRDAGLFIVGEQGGMFRSTDNGQTWAKVQGPYEGSLFGV--IGTARPQTLLA 236
Query: 280 AGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++++ G +W I KAA + L +++ ++GN G +L+
Sbjct: 237 YGLRGNLFRSSDFGDSWQPIELKAARGTLEFGLAGATLVDDGSLVLVGNGGSVLR 291
>gi|404399665|ref|ZP_10991249.1| BNR/Asp-box repeat domain-containing protein [Pseudomonas
fuscovaginae UPB0736]
Length = 350
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + + W + + + LLD+ F D + GF +G LLET DGG+ W
Sbjct: 121 QILASSDGGATWSKQFEDLKREAPLLDVWF--KDGSTGFAVGAYGALLETTDGGQHWEDA 178
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N+I+ G +IVG+ + ++D G++WER+ P L G +
Sbjct: 179 S-DRLDNED-QYHLNAIAAVKDSGLFIVGEQGSMFRSADWGQTWERLDGPYQGSLFGVLG 236
Query: 210 FWQP 213
+P
Sbjct: 237 TAEP 240
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 27/159 (16%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
VG +L + D G +W R+P L H AV Q + G W
Sbjct: 75 VGDRGHILFSDDQGTTWTQARVPTRQLLTAVYFVDDKHGWAVGHDAQILASSDGGATW-- 132
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+++FE++ ++ +LDV ++ +A G G LL+TT+GG+ W
Sbjct: 133 --------------SKQFEDLKREAP---LLDVWFKDGSTGFAVGAYGALLETTDGGQHW 175
Query: 297 IREKAADNI----AANLYSVKFINEKKGFVLGNDGVLLQ 331
E A+D + +L ++ + + F++G G + +
Sbjct: 176 --EDASDRLDNEDQYHLNAIAAVKDSGLFIVGEQGSMFR 212
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 96/250 (38%), Gaps = 44/250 (17%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+ L +G R +L + D G TW +P+ + Y + K
Sbjct: 61 LLLDVVHAGARL---VAVGDRGHILFSDDQGTTWTQARVPTRQLLTAVYFVDD-----KH 112
Query: 176 GWIVGKPAILLHTSDAGESWERI--PLSSQLP--------GDMAF-------------WQ 212
GW VG A +L +SD G +W + L + P G F
Sbjct: 113 GWAVGHDAQILASSDGGATWSKQFEDLKREAPLLDVWFKDGSTGFAVGAYGALLETTDGG 172
Query: 213 PHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGF 264
H + R+ N + D GL+++ G +F S G T E + P Q F
Sbjct: 173 QHWEDASDRLDNEDQYHLNAIAAVKDSGLFIVGEQGSMFRSADWGQTWERLDGPYQGSLF 232
Query: 265 GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKGF 321
G+L G A G G L ++++ G TW + KAA + L + +
Sbjct: 233 GVL--GTAEPATLLAYGLRGNLYRSSDFGSTWEPVELKAARGALEFGLSGGALLADGSLV 290
Query: 322 VLGNDGVLLQ 331
++GN G +++
Sbjct: 291 IVGNGGSVIR 300
>gi|373457035|ref|ZP_09548802.1| hypothetical protein Calab_0832 [Caldithrix abyssi DSM 13497]
gi|371718699|gb|EHO40470.1| hypothetical protein Calab_0832 [Caldithrix abyssi DSM 13497]
Length = 422
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 86/219 (39%), Gaps = 42/219 (19%)
Query: 126 DLNHGFLLGTRQ---TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVG-- 180
D G+++G + +T DGG TW + D + GW +G
Sbjct: 42 DTASGWIVGNENQTGKIFKTFDGGYTWILVDFINGVLNDIYF------IDENNGWAIGHD 95
Query: 181 ---KPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQ----NMGWRADGGL 233
I+L T + G +W+RI L P+N +R Q N GW +
Sbjct: 96 MIYNKGIVLKTINRGINWKRIRL------------PYN-VYLKRCQFLDSNSGWM----I 138
Query: 234 WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGG 293
+ + R + + G E++E + S I + S+D W G + K+ +GG
Sbjct: 139 YNMARDTIFYTNNGG---EDWEVKKIGSNK-KIFSFDFVSEDTGWVCCSEGNIYKSVDGG 194
Query: 294 KTWIREKAADNIAANLYSVKFINEKKGF-VLGNDGVLLQ 331
WI +K I + + F+N K G+ V GN LQ
Sbjct: 195 NNWINQKIP--IDWPVLVIDFLNNKLGWCVTGNSAAFLQ 231
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 38/231 (16%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGT--RQTLLETKDGGKTWAPRSIPSAEEED 161
W+R+ +P + V L F+ D N G+++ R T+ T +GG+ W + I S ++
Sbjct: 113 WKRIRLPYN--VYLKRCQFL--DSNSGWMIYNMARDTIFYTNNGGEDWEVKKIGS-NKKI 167
Query: 162 FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARR 221
F++ F S GW+ + + D G +W ++ ++P D V
Sbjct: 168 FSFDFVS----EDTGWVCCSEGNIYKSVDGGNNW----INQKIPIDWPV------LVIDF 213
Query: 222 IQN-MGWRADG--GLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAW 278
+ N +GW G +L + GG K I E P GI + W
Sbjct: 214 LNNKLGWCVTGNSAAFLQTKDGG----KNWDILLE-SMTPC-----GIFSFLFMDHKTGW 263
Query: 279 AAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
A G + + TT+GG WIRE ++ L + F++ G+ +G+ +L
Sbjct: 264 ACGCNEIF-HTTDGGYRWIREIE---VSVYLKDIFFVDSLHGWSVGDKTIL 310
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
KS + + W IP+D V+++D F+ + L + G L+TKDGGK W
Sbjct: 189 KSVDGGNNWINQKIPIDWPVLVID--FLNNKLGWC-VTGNSAAFLQTKDGGKNWDILLES 245
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAF----- 210
F++ F K GW G I HT+D G W R S D+ F
Sbjct: 246 MTPCGIFSFLF----MDHKTGWACGCNEI-FHTTDGGYRWIREIEVSVYLKDIFFVDSLH 300
Query: 211 -WQPHNRAVARRI 222
W ++ + + I
Sbjct: 301 GWSVGDKTILKTI 313
>gi|440746782|ref|ZP_20926062.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae
BRIP39023]
gi|440371042|gb|ELQ07907.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae
BRIP39023]
Length = 334
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DL++G +G LL T DGG+ W
Sbjct: 104 QVLASSDGGKSWSKQFEDLKREAPLLDVWF--KDLDNGLAIGAYGLLLSTADGGQHWEDV 161
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N I+ G +IVG+ + + D G++WE+I P L G +
Sbjct: 162 S-DRLDNED-QYHLNGITQVKDAGLFIVGEAGSMFRSRDEGQTWEKIDGPYQGSLFGVIG 219
Query: 210 FWQP 213
QP
Sbjct: 220 TAQP 223
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L +G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 44 LLLDVAHAGARL---VAVGDHGHILLSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 94
Query: 176 -GWIVGKPAILLHTSDAGESWER--------IPLSSQLPGDM---------------AFW 211
GW VG A +L +SD G+SW + PL D+ A
Sbjct: 95 HGWAVGHDAQVLASSDGGKSWSKQFEDLKREAPLLDVWFKDLDNGLAIGAYGLLLSTADG 154
Query: 212 QPHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
H V+ R+ N + D GL+++ G +F S+ G T E + P Q
Sbjct: 155 GQHWEDVSDRLDNEDQYHLNGITQVKDAGLFIVGEAGSMFRSRDEGQTWEKIDGPYQGSL 214
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ +G A G G L ++++ G +W + K A I L S + +
Sbjct: 215 FGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSWQPVELKGARGPIEFGLASATLLADGSL 272
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 273 VLVGNGGSVMR 283
>gi|126738213|ref|ZP_01753934.1| glycosyl hydrolase, BNR protein [Roseobacter sp. SK209-2-6]
gi|126720710|gb|EBA17415.1| glycosyl hydrolase, BNR protein [Roseobacter sp. SK209-2-6]
Length = 421
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 37/194 (19%)
Query: 132 LLGTRQTLLETKDGGKTWAPRS-------------IPSAEEEDFNYR----------FNS 168
L G+ + + + DGGKT++ S IP++E DF+ FN
Sbjct: 190 LFGSGEEITRSTDGGKTFSSVSSDLQNNHFSITVQIPASESTDFDLYVTGVSRAPRGFNG 249
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR 228
GK + G +L ++D G S+ +IP SS++ AF + R +
Sbjct: 250 SVESGKNILLFGDKGTILRSTDQGRSFSQIPFSSEVDFTDAFTNGEKILLTGRSAQIALS 309
Query: 229 ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA------GG 282
D GG F + G E + +G G+ R D W G
Sbjct: 310 KD--------GGATFHTASNGFRENELIDTIIRQGDGLFFANLRFNDAVWDNNTVLLFGD 361
Query: 283 SGVLLKTTNGGKTW 296
SG + ++ +GG+T+
Sbjct: 362 SGTIFRSIDGGQTF 375
>gi|398842832|ref|ZP_10600003.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM102]
gi|398105115|gb|EJL95232.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM102]
Length = 365
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 39/201 (19%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R ++ + D G TW S P + RF ++GW VG ++LH+ D G
Sbjct: 68 VGERGFIIISDDNGTTWKQVSSPVSMTL-VKVRF----IDERQGWAVGHAGVVLHSQDGG 122
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
SW S QL G A A+ L RG +++ + +
Sbjct: 123 LSW-----SKQLDGVQA-------------------AEIELQEAKRGTDEQMAQAQQLVD 158
Query: 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANLY 310
+ + P LDV + WA G G+ T +GG +W IR + + +LY
Sbjct: 159 DGPDKP-------FLDVLFLDARNGWAVGAYGLAFVTHDGGLSWQSIRSRLDNPNGLHLY 211
Query: 311 SVKFINEKKGFVLGNDGVLLQ 331
S++ + FV G G LL+
Sbjct: 212 SIERMGADL-FVAGEQGTLLR 231
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 85 AATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKD 144
AA L E ++E ++ +++ + P LD+ F+ D +G+ +G T D
Sbjct: 134 AAEIELQEAKRGTDEQMAQAQQL-VDDGPDKPFLDVLFL--DARNGWAVGAYGLAFVTHD 190
Query: 145 GGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
GG +W +SI S + SI G + ++ G+ LL +SD G+++E +
Sbjct: 191 GGLSW--QSIRSRLDNPNGLHLYSIERMGADLFVAGEQGTLLRSSDEGQTFEAL 242
>gi|395143803|gb|AFN52437.1| hypothetical protein [Pseudomonas putida]
Length = 366
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 31/182 (17%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
VL+ + PD L +G R ++ + D G +W +P + S+ F K
Sbjct: 47 VLVAVTSTPDRL---VAVGERGIVVLSDDNGISWRQAKVP------VSVTLTSVQFVDAK 97
Query: 175 EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
+GW VG + LH+ D GE+WE+ Q G + Q R R Q+ D L
Sbjct: 98 QGWAVGHGGVALHSKDGGETWEK-----QFDG-IELAQTLLRIAKERQQSNNGDPD-ELE 150
Query: 235 LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGK 294
V+ L +S G + P +LDV + ++ + G ++L+T +GG
Sbjct: 151 RQVKAAELMVSDG-------PDKP-------LLDVYFVNRRTGYIIGSYNLILRTDDGGH 196
Query: 295 TW 296
W
Sbjct: 197 NW 198
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 99/258 (38%), Gaps = 59/258 (22%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP----------- 151
+W + +PV V L + FV D G+ +G L +KDGG+TW
Sbjct: 76 SWRQAKVPVS--VTLTSVQFV--DAKQGWAVGHGGVALHSKDGGETWEKQFDGIELAQTL 131
Query: 152 -------------------RSIPSAE---EEDFNYRFNSISFKGKE-GWIVGKPAILLHT 188
R + +AE + + + F + G+I+G ++L T
Sbjct: 132 LRIAKERQQSNNGDPDELERQVKAAELMVSDGPDKPLLDVYFVNRRTGYIIGSYNLILRT 191
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPH-NRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG 247
D G +W+ WQ H + + MG L+++ G +F S+
Sbjct: 192 DDGGHNWQP-------------WQAHVDNPTGLHLYAMGGSGS-SLYIVGEQGSVFRSQN 237
Query: 248 TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAA 307
G EFE V G D+ + D+ +G G ++++ G W + + + A+
Sbjct: 238 DG--AEFEAVQTPYEG-SYFDLIVDANDQLLVSGLRGSTYRSSDSGADWTKVEVPSS-AS 293
Query: 308 NLYSVKFINEKKGFVLGN 325
SV+ + GFVL N
Sbjct: 294 ITGSVRL--KDGGFVLVN 309
>gi|254241334|ref|ZP_04934656.1| hypothetical protein PA2G_02029 [Pseudomonas aeruginosa 2192]
gi|126194712|gb|EAZ58775.1| hypothetical protein PA2G_02029 [Pseudomonas aeruginosa 2192]
Length = 352
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 45/189 (23%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF-NYRFNSISFKGKE 175
L+D+ + + L +G R + ++DGGKTW + +PS D + RF+ +
Sbjct: 37 LVDVTYTGEAL---LGVGLRGLIQRSEDGGKTW--KQVPSPISGDLVSVRFSD----ARH 87
Query: 176 GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFW--------QPHNRAVARRIQNMGW 227
GWI G ++LLHT D G SW+ +L + W P A+ R I
Sbjct: 88 GWIAGHDSVLLHTRDGGNSWQVQLDGRRLLTLLRDWYGRLAKSGDPDAEAMLREID---- 143
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLL 287
++ T T + P LDV + S+ + G G++L
Sbjct: 144 ----------------MAMETSATPDVLASP-------FLDVLFDSRGNGFVVGAFGMIL 180
Query: 288 KTTNGGKTW 296
++ + G TW
Sbjct: 181 RSRDYGATW 189
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
++DV Y + + G G++ ++ +GGKTW ++ I+ +L SV+F + + G++ G+
Sbjct: 37 LVDVTY-TGEALLGVGLRGLIQRSEDGGKTW--KQVPSPISGDLVSVRFSDARHGWIAGH 93
Query: 326 DGVLLQ 331
D VLL
Sbjct: 94 DSVLLH 99
>gi|406906371|gb|EKD47548.1| BNR repeat-containing glycosyl hydrolase [uncultured bacterium]
Length = 692
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 34/199 (17%)
Query: 104 WER--VYIPVDPG---VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAE 158
WE VY P + G L D+ FV D N +G T+++T+D G +W S+ ++
Sbjct: 72 WENRVVYQPTEDGWYTKALYDVEFV--DENTVIAVGEDGTIVKTEDFGDSWQDASVFTS- 128
Query: 159 EEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAV 218
N + GWIVG+ + T+D G+SW ++Q G + N
Sbjct: 129 ----NKLLRLEMYSTTRGWIVGENGSIYKTTDGGDSW-----TAQTTG---VTEDLNGVY 176
Query: 219 ARRIQNMGWRADGGLWLL-VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEA 277
+ + D G +L+ GG ++ + G EF +V S +G++ Y
Sbjct: 177 FLNLLDGYIVGDNGTFLVTTTGGTVWNDQSAGGVYEFNDVYFASATYGLVATSYG----- 231
Query: 278 WAAGGSGVLLKTTNGGKTW 296
LL T +GG +W
Sbjct: 232 --------LLYTIDGGLSW 242
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 278 WAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
W G +G + KTT+GG +W + + +L V F+N G+++G++G L
Sbjct: 143 WIVGENGSIYKTTDGGDSWTAQTTG--VTEDLNGVYFLNLLDGYIVGDNGTFL 193
>gi|398924326|ref|ZP_10661115.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM48]
gi|398173451|gb|EJM61285.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM48]
Length = 363
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 95/204 (46%), Gaps = 34/204 (16%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D GK W ++P + + +++F +GW VG ++LH+SDA
Sbjct: 61 VGQRGHILFSDDAGKHWQQAAVPVSAD------LTAVNFPTATQGWAVGNDGVVLHSSDA 114
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVAR-RIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
G +W++ L + G++ H A+A+ N W ++G +
Sbjct: 115 GATWKK-QLDGRQIGELLI--KHYSALAKAEPGNEQWPQ-------------LATEGQRL 158
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAAN 308
++ + P +LDV + + + G ++L+T +GG++W +++ + + +
Sbjct: 159 LDQGADKP-------LLDVWFANDKTGYVVGVFNLILRTDDGGQSWTPFQDRTDNPQSLH 211
Query: 309 LYSVKFINEKKGFVLGNDGVLLQY 332
L ++ + ++ G G+LL++
Sbjct: 212 LNAIAATGDAL-YIAGEQGLLLKW 234
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 67/166 (40%), Gaps = 28/166 (16%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D G+++G +L T DGG++W P + + + N+I+ G
Sbjct: 167 LLDVWFAND--KTGYVVGVFNLILRTDDGGQSWTPFQDRTDNPQSLH--LNAIAATGDAL 222
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAFWQPHNRAVARRIQNMGWR 228
+I G+ +LL D+ + + +P Q PG++ + + W
Sbjct: 223 YIAGEQGLLLKWDDSTQRFAAVPTPYQGSFFGVLGKPGEVLVYGLRGNVLRSSDGGQSWT 282
Query: 229 A-DGGLW---------------LLVRGGGLFLSKGTGITEEFEEVP 258
A D GL L +GG + +S+GTG + P
Sbjct: 283 ALDTGLHVSITAGLIDARGNYRLFTQGGQMLVSQGTGAQLHLLQQP 328
>gi|385330808|ref|YP_005884759.1| BNR/Asp-box repeat-containing protein [Marinobacter adhaerens HP15]
gi|311693958|gb|ADP96831.1| BNR/Asp-box repeat protein [Marinobacter adhaerens HP15]
Length = 377
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 36/199 (18%)
Query: 110 PVD--PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFN 167
P D P +L D V D + +G R ++ + D GK+W +P +
Sbjct: 34 PTDLAPDNLLTDATRVGDRI---VAVGERGHIIYSDDEGKSWVQGEVP------VSVTLT 84
Query: 168 SISF-KGKEGWIVGKPAILLHTSDAGESWE---------RIPLSSQLPGDMAFWQPHNRA 217
+I F GW VG ++LHTSDAG +W + + S+ A + A
Sbjct: 85 AIDFGSDTHGWAVGHSGVVLHTSDAGATWSLQIDGIRAMELAIESREEQIAAMEERIEEA 144
Query: 218 VARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEA 277
+++ W D + L I + + PV +LDV + +++
Sbjct: 145 PEEEKEDLEWALDDLYFAL-----------ENIQADMDIGPVNP----LLDVWFENENRG 189
Query: 278 WAAGGSGVLLKTTNGGKTW 296
+ G G+ L+T +GG+TW
Sbjct: 190 FVVGAYGMFLRTMDGGETW 208
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 105/285 (36%), Gaps = 71/285 (24%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR---- 152
S++ +W + +PV V L I F D HG+ +G +L T D G TW+ +
Sbjct: 65 SDDEGKSWVQGEVPVS--VTLTAIDFGSD--THGWAVGHSGVVLHTSDAGATWSLQIDGI 120
Query: 153 -----SIPSAEEE-----------------DFNYRFNSISF------------------- 171
+I S EE+ D + + + F
Sbjct: 121 RAMELAIESREEQIAAMEERIEEAPEEEKEDLEWALDDLYFALENIQADMDIGPVNPLLD 180
Query: 172 ----KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
G++VG + L T D GE+W+ W P N
Sbjct: 181 VWFENENRGFVVGAYGMFLRTMDGGETWKD-------------WAPRINNRQNFHLNGIT 227
Query: 228 RADGGLWLLV-RGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
R GG ++V G + +S G T E E P + FG++ G +E A G G +
Sbjct: 228 RITGGALVVVGEAGQIHVSVDGGETFERREAPYEGSLFGVIGTG--QVNEILAFGLRGNM 285
Query: 287 LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
L +++ GK+W ++ A L ++ + ++GN G +L
Sbjct: 286 LFSSDLGKSW--RMVPNSAGATLNDGVVADDGRITLVGNGGAVLM 328
>gi|302188489|ref|ZP_07265162.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae pv.
syringae 642]
Length = 334
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q S + +W + + + LLD+ F DL++G +G LL T DGG+ W
Sbjct: 104 QVLASSDGGKSWNKQFEDLKREAPLLDVWF--KDLDNGLAIGAYGLLLSTADGGQHWEDV 161
Query: 153 SIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
S + ED Y N I+ G +IVG+ + + D G++WE+I P L G +
Sbjct: 162 S-DRLDNED-QYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEKIDGPYQGSLFGVIG 219
Query: 210 FWQP 213
QP
Sbjct: 220 TAQP 223
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 46/251 (18%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LLD+A L ++G +L + D GKTW+ +P+ + ++ F ++
Sbjct: 44 LLLDVAHAGARL---VVVGDHGHILLSDDQGKTWSQARVPTRQ------LLTAVFFVDEQ 94
Query: 176 -GWIVGKPAILLHTSDAGESWER--------IPLSSQLPGDM---------------AFW 211
GW VG A +L +SD G+SW + PL D+ A
Sbjct: 95 HGWAVGHDAQVLASSDGGKSWNKQFEDLKREAPLLDVWFKDLDNGLAIGAYGLLLSTADG 154
Query: 212 QPHNRAVARRIQN--------MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
H V+ R+ N + D GL+++ G +F S+ G T E + P Q
Sbjct: 155 GQHWEDVSDRLDNEDQYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQTWEKIDGPYQGSL 214
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADN-IAANLYSVKFINEKKG 320
FG+ +G A G G L ++++ G +W I K A + L S + +
Sbjct: 215 FGV--IGTAQPSTLLAYGLRGNLFRSSDFGDSWQPIELKGARGPLEFGLASATLLADGSL 272
Query: 321 FVLGNDGVLLQ 331
++GN G +++
Sbjct: 273 VLVGNGGSVMR 283
>gi|398906065|ref|ZP_10653276.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM50]
gi|398173795|gb|EJM61616.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM50]
Length = 365
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 91/233 (39%), Gaps = 50/233 (21%)
Query: 109 IPVDPGV--------VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE 160
+PV P + V+L +A L +G R ++ + D G TW S P +
Sbjct: 39 LPVTPAITSAMAAQSVMLSVARAGQRL---VAVGERGFIIVSDDNGTTWKQVSSPVSMTL 95
Query: 161 DFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVAR 220
RF ++GW VG ++LH+ D G SW S QL G A
Sbjct: 96 -VKVRF----IDERQGWAVGHAGVVLHSQDGGLSW-----SKQLDGVQA----------- 134
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
A+ L RG L++ + ++ + P LDV + W
Sbjct: 135 --------AEIELQEAKRGTDEQLAQAQQLVDDGPDKP-------FLDVLFLDARNGWVV 179
Query: 281 GGSGVLLKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G+ T +GG +W IR + + +LYS++ + FV G G LL+
Sbjct: 180 GAYGLAFVTHDGGLSWQSIRSRLDNPNGLHLYSIERMGADL-FVAGEQGTLLR 231
>gi|109898317|ref|YP_661572.1| BNR repeat-containing protein [Pseudoalteromonas atlantica T6c]
gi|109700598|gb|ABG40518.1| BNR repeat protein [Pseudoalteromonas atlantica T6c]
Length = 332
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 31/235 (13%)
Query: 78 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+ LS++ A L A + A S+++ P+ +LLDIA D L +G R
Sbjct: 1 MKLSLASAVIAVLLAPLASIQAAQSSFQA---PLVDQSLLLDIAHSGDQL---IAVGERG 54
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
++ + DG + W +PS + F G++GW VG I+LHT + G WE
Sbjct: 55 HIIRSNDG-QAWQQMDVPSTS------TLTGVYFVGQQGWAVGHDFIILHTQNNGLDWEI 107
Query: 198 ---IPLSSQLPGDMAFWQPHNRAVA-------RRIQNMG--WRADGGLWLLVRGGGLFLS 245
P + D+ F+ N +A R ++ G WR + + + +L+
Sbjct: 108 QHFAPEQERPLLDVVFFNE-NEGIAIGAYGAFLRTEDGGKSWRNELHAEFVNQADQEYLN 166
Query: 246 KGTGITEEF--EEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
+ E F EE+ + V S +E + AG +G+L +++ G+TW R
Sbjct: 167 ELRLEDEAFYQEELAAILPHLNSVSV---SGNEVYLAGEAGLLAMSSDKGQTWKR 218
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 24/119 (20%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW----APRSIPSAEE 159
WE + + LLD+ F + N G +G L T+DGGK+W + A++
Sbjct: 105 WEIQHFAPEQERPLLDVVFFNE--NEGIAIGAYGAFLRTEDGGKSWRNELHAEFVNQADQ 162
Query: 160 EDFNY------------------RFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPL 200
E N NS+S G E ++ G+ +L +SD G++W+R+ +
Sbjct: 163 EYLNELRLEDEAFYQEELAAILPHLNSVSVSGNEVYLAGEAGLLAMSSDKGQTWKRMDI 221
>gi|410617665|ref|ZP_11328630.1| BNR repeat-containing protein [Glaciecola polaris LMG 21857]
gi|410162796|dbj|GAC32768.1| BNR repeat-containing protein [Glaciecola polaris LMG 21857]
Length = 332
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 84/223 (37%), Gaps = 43/223 (19%)
Query: 7 LSEPMMLVKPSLSSLFAPRLNRT----NAQAQQPRFISTSRACSLPSSDSSSSSSSSSSS 62
L P+ V+ + +S AP ++++ Q+ + R + S+D S
Sbjct: 13 LLAPLSTVQAAQNSFQAPLVDQSLLLDITQSGEQLIAVGERGHIIRSTDGQKWQQVDVPS 72
Query: 63 SSSLNRRQFVSQ---TATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLD 119
+S+L FV Q I A GL WE Y + LLD
Sbjct: 73 TSTLTGVYFVGQQGWAVGHDFVILHTANNGL------------DWEVQYYAPEQERPLLD 120
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR-SIPSAEEEDFNY-------------- 164
+AF + N G +G L T DGGKTW ++D +Y
Sbjct: 121 VAFF--NKNEGIAIGAYGAFLRTVDGGKTWQSELHAEFVNQDDQDYLNELRLEDEAFYKE 178
Query: 165 -------RFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPL 200
NS+S G + ++ G+ +L +SD G +W+R+ +
Sbjct: 179 ELAAILPHLNSVSISGNDIYLAGEAGLLAMSSDKGRTWKRMDI 221
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 78/208 (37%), Gaps = 70/208 (33%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI 169
P+ +LLDI + L +G R ++ + DG K W +PS +
Sbjct: 30 PLVDQSLLLDITQSGEQL---IAVGERGHIIRSTDGQK-WQQVDVPSTS------TLTGV 79
Query: 170 SFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA 229
F G++GW VG ++LHT++ G W ++ ++ P
Sbjct: 80 YFVGQQGWAVGHDFVILHTANNGLDW-----------EVQYYAPE--------------- 113
Query: 230 DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKT 289
+E P +LDV + +++E A G G L+T
Sbjct: 114 -------------------------QERP-------LLDVAFFNKNEGIAIGAYGAFLRT 141
Query: 290 TNGGKTWIREKAADNIAANLYSVKFINE 317
+GGKTW E A+ + N ++NE
Sbjct: 142 VDGGKTWQSELHAEFV--NQDDQDYLNE 167
>gi|358637303|dbj|BAL24600.1| hypothetical protein AZKH_2294 [Azoarcus sp. KH32C]
Length = 375
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 34/183 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G R ++ + DGG TW ++P + +SF +GW VG ++LH+ D
Sbjct: 80 VGLRGMIVTSDDGGATWTQAAVPVGSD------LVGVSFPTPNQGWAVGHGGVVLHSEDG 133
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G W R QL G A A+R N ADG LL R L + G T
Sbjct: 134 GLHWTR-----QLEGRQAADLAVKYFKAQRAANP--EADG---LLGREQSLIDAGG---T 180
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANL 309
+ F LDV + S+ + G + +T +GGKTW+ ++ + +L
Sbjct: 181 QPF------------LDVLFDSETSGFVVGAFNRIYRTGDGGKTWVPWMDRVDNPREFHL 228
Query: 310 YSV 312
YS+
Sbjct: 229 YSI 231
>gi|120598628|ref|YP_963202.1| BNR repeat-containing protein [Shewanella sp. W3-18-1]
gi|120558721|gb|ABM24648.1| BNR repeat protein [Shewanella sp. W3-18-1]
Length = 337
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 41/248 (16%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W++V P V L + F+ L G+ +G T+L T+DGG+TW + S E+ F
Sbjct: 69 WQQVITPT--SVQLTKVFFINSTL--GWAVGHDATILHTQDGGQTWQLQMQSSEVEKPF- 123
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESW-----------ERIPLSSQLPG------ 206
+ + +EG +G + T D G +W E + ++L G
Sbjct: 124 --LDILFLNEREGMAIGAYGLFYRTRDGGVNWRAEFHEELLAEEDVAYLAELKGSDEAAY 181
Query: 207 --DMAFWQPH-NRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
+ A PH NR +A + DG L L+ G + S GIT
Sbjct: 182 LDERASLLPHFNRIIALK--------DGRLILVGELGLVASSDDKGITFTRTSFDYDGSM 233
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
F +++ +D + G G + KT + W + + +++ V I+++ +++
Sbjct: 234 FNAIEM----RDAIYVMGLRGNIFKTDLSLEQW--HEIEMPVQSSINGVMAISDETLYLV 287
Query: 324 GNDGVLLQ 331
GN GV++Q
Sbjct: 288 GNAGVVIQ 295
>gi|388545683|ref|ZP_10148963.1| BNR repeat-containing protein [Pseudomonas sp. M47T1]
gi|388276094|gb|EIK95676.1| BNR repeat-containing protein [Pseudomonas sp. M47T1]
Length = 360
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 76 ATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGT 135
A+L +S + GL Q A + + L A V P VLL IA L +G
Sbjct: 13 ASLLISALCLSMAGLGAQAASASDVL-AQPAVQSPQALHGVLLGIARAGARL---VAVGE 68
Query: 136 RQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGES 194
R T+L + + G +W S+P + ++ F G++GW VG ++LH+SDAGE
Sbjct: 69 RGTVLLSDNNGVSWRQASVP------VSTSLTAVQFVDGQQGWAVGHGGVVLHSSDAGEH 122
Query: 195 WE 196
W
Sbjct: 123 WH 124
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS--IPSAEEEDFNYRFNSISFKGK 174
LL ++F D HG + G L T+DGG TW+ + +P+ + +++ +G
Sbjct: 164 LLALSF--SDARHGLVTGAYGLALYTEDGGATWSSWAGRLPNPQ----GLHLYAVAQRGH 217
Query: 175 EGWIVGKPAILLHTSDAGESWERI 198
+ W+ G+ ++LH+SD G ++ +
Sbjct: 218 DLWVAGEQGLVLHSSDGGGHFDAL 241
>gi|398844609|ref|ZP_10601669.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM84]
gi|398254431|gb|EJN39528.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM84]
Length = 361
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 91/201 (45%), Gaps = 35/201 (17%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAG 192
G R +L + DG K W+ +PS+ + ++SF +GW VG ++LH+ D G
Sbjct: 60 GQRGHVLYSDDG-KAWSQAQVPSSSD------LTALSFPSAHQGWAVGHEGVVLHSRDGG 112
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
++W S QL G + A I++ G A+ + + +
Sbjct: 113 QTW-----SKQLDG--------RQIAALLIRHYGNPANPD-----------EPQAQRLKQ 148
Query: 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANLY 310
+ E Q +LDV + + + G ++L+T +GGK W+ ++ + + +LY
Sbjct: 149 DAELFAAQGADKPLLDVWFEDERNGFVIGAFNLILRTEDGGKHWVPWLDRVDNPRSMHLY 208
Query: 311 SVKFINEKKGFVLGNDGVLLQ 331
S++ + F++G G++L+
Sbjct: 209 SLR-PAQGTLFMVGEQGLVLE 228
>gi|421497778|ref|ZP_15944927.1| glycosyl hydrolase [Aeromonas media WS]
gi|407183238|gb|EKE57146.1| glycosyl hydrolase [Aeromonas media WS]
Length = 353
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 93/203 (45%), Gaps = 32/203 (15%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
+G R +L + D GK W +P + + N++ F E GW VG ++LH+ D
Sbjct: 56 VGQRGHILYSDDEGKGWQQARVPVSSD------LNAVVFPTPEQGWAVGGDGVVLHSQDG 109
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G SW++ L + G++ + A+AR D W ++ +G +
Sbjct: 110 GTSWQK-QLDGRQIGELVL--RYYMALARA------EPDSAQW------PQWVEEGQRLE 154
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANL 309
EE + P +LDV ++ + G ++L+T +GG++W ++++ + +L
Sbjct: 155 EEGADKP-------LLDVWFQDDRVGYVVGVFNLILRTQDGGQSWTPLQDRTDNPQGLHL 207
Query: 310 YSVKFINEKKGFVLGNDGVLLQY 332
++ + +++G G+L ++
Sbjct: 208 NAIARAGDDL-YLVGEQGLLRKW 229
>gi|386013151|ref|YP_005931428.1| BNR repeat-containing protein [Pseudomonas putida BIRD-1]
gi|313499857|gb|ADR61223.1| BNR domain-containing protein [Pseudomonas putida BIRD-1]
Length = 326
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S S+ + + + RQ + TA L G Q S + + W + + +
Sbjct: 55 SDDQGSTWTQARVPTRQLL--TAVFFLDDKRGWAVGHDAQILASSDGGATWSKQFEDLAR 112
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
LLD+ F+ D HGF +G LLET DGG+ W + + + N I+
Sbjct: 113 EAPLLDVTFL--DAQHGFAVGAYGALLETTDGGQHW--QDVAERLDNPDQLHLNGITQVR 168
Query: 174 KEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD 230
G +IVG+ + ++D G++W ++ P L G + +P
Sbjct: 169 DAGLFIVGEQGGMFRSTDNGQTWTKVQGPYEGSLFGVIGTARPQT--------------- 213
Query: 231 GGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRG---FGILDVGYRSQDEAWAAGGSGV 285
LL G G LF S G + + E+ +RG FG+ G G
Sbjct: 214 ----LLAYGLRGNLFRSSDFGDSWQPIELKA-ARGTLEFGLAGATLVDDGSLVLVGNGGS 268
Query: 286 LLKTTNGGKTWIREKAADNIA 306
+L++T+ G+T+ AD +A
Sbjct: 269 VLRSTDDGQTFSVYNRADRLA 289
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 43/235 (18%)
Query: 132 LLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
++G R +L + D G TW +P+ + ++ F K GW VG A +L +SD
Sbjct: 45 VVGDRGHILFSDDQGSTWTQARVPTRQ------LLTAVFFLDDKRGWAVGHDAQILASSD 98
Query: 191 AGESWERI--PLSSQLP-GDMAFWQP--------------------HNRAVARRIQN--- 224
G +W + L+ + P D+ F H + VA R+ N
Sbjct: 99 GGATWSKQFEDLAREAPLLDVTFLDAQHGFAVGAYGALLETTDGGQHWQDVAERLDNPDQ 158
Query: 225 -----MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
+ D GL+++ GG+F S G T + P + FG+ +G A
Sbjct: 159 LHLNGITQVRDAGLFIVGEQGGMFRSTDNGQTWTKVQGPYEGSLFGV--IGTARPQTLLA 216
Query: 280 AGGSGVLLKTTNGGKTW--IREKAA-DNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G G L ++++ G +W I KAA + L +++ ++GN G +L+
Sbjct: 217 YGLRGNLFRSSDFGDSWQPIELKAARGTLEFGLAGATLVDDGSLVLVGNGGSVLR 271
>gi|398869256|ref|ZP_10624635.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM78]
gi|398230991|gb|EJN16994.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM78]
Length = 350
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 27/203 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ S W + +P LL F DD G+ +G +L + DGG TW +
Sbjct: 84 SDDQGSTWTQAKVPTRQ---LLTSVFFVDD-KRGWAVGHDAQILASDDGGITW------T 133
Query: 157 AEEEDFNYR--FNSISFK-GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP 213
+ ED + F+ G+ VG L+ T+D G++WE + S +L + F
Sbjct: 134 KQFEDLKRESPLLDVWFQDANSGFAVGAYGALMATTDGGKNWEDV--SDRLDNEDQF--- 188
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
H A+ D GL+++ G +F S G T E E P + FG+ +G
Sbjct: 189 HLNAITAV-------KDAGLFIVGEQGSMFRSADWGQTWEKLEGPYEGSLFGV--IGTAQ 239
Query: 274 QDEAWAAGGSGVLLKTTNGGKTW 296
+ A G G L ++T+ G TW
Sbjct: 240 PNTLLAYGLRGNLYRSTDFGSTW 262
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 72/167 (43%), Gaps = 23/167 (13%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR 228
+ GK VG +L++ D G +W + + ++ F+ R
Sbjct: 65 VVHAGKRLVAVGDRGHILYSDDQGSTWTQAKVPTRQLLTSVFFVDDKRG----------- 113
Query: 229 ADGGLWLLVRGGGLFLSKGTGIT--EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
W + + S GIT ++FE++ +S +LDV ++ + +A G G L
Sbjct: 114 -----WAVGHDAQILASDDGGITWTKQFEDLKRESP---LLDVWFQDANSGFAVGAYGAL 165
Query: 287 LKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+ TT+GGK W + ++ + +L ++ + + F++G G + +
Sbjct: 166 MATTDGGKNWEDVSDRLDNEDQFHLNAITAVKDAGLFIVGEQGSMFR 212
>gi|284117621|ref|ZP_06386748.1| conserved hypothetical protein, secreted [Candidatus Poribacteria
sp. WGA-A3]
gi|283829494|gb|EFC33859.1| conserved hypothetical protein, secreted [Candidatus Poribacteria
sp. WGA-A3]
Length = 339
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 40/195 (20%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRS---IPSAEEEDFNYRFNSISFKGKE-GWIVG----- 180
G+ +G T+L T++GG+TW + + ++D N +N+I F +E GWI G
Sbjct: 144 GYAVGESDTILSTENGGRTWKVLQGGQLGAIGDDDANM-YNAIQFLDEETGWIAGVRVSP 202
Query: 181 ----KPAILLHTSDAGESWERIPLSSQ-LPGDMAFWQPHNRAVARRIQNMGWR-ADGGLW 234
+ A++ T D G++W + + + D+ F +MGW + G+
Sbjct: 203 STQGQHALIQKTMDGGQTWVTQSTNKEDILEDIFFLDA----------SMGWAVGENGII 252
Query: 235 LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS---GVLLKTTN 291
L GG ++ TEE + VG+ + WA GG G +L+T++
Sbjct: 253 LHTTDGGESWTEQMSGTEET-----------LRSVGFADEKNGWATGGDFGVGAILRTSD 301
Query: 292 GGKTWIREKAADNIA 306
GG+TW E + + +
Sbjct: 302 GGETWELEDSREKLV 316
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 42/237 (17%)
Query: 104 WER--VYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED 161
W++ + IP D L ++ F+ D HG+ +G T++ T +G + W ++
Sbjct: 82 WQKSEIKIPAD----LAELYFLDD--KHGWAVGANGTIVSTTNG-RDWEMQTSKVGN--- 131
Query: 162 FNYRFNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVAR 220
I F KE G+ VG+ +L T + G +W ++ QL A+
Sbjct: 132 ---GLKGIYFANKEVGYAVGESDTILSTENGGRTW-KVLQGGQLGAIGDDDANMYNAIQF 187
Query: 221 RIQNMGWRA-------DGGLWLLVR----GGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
+ GW A G L++ GG ++++ T + E D+
Sbjct: 188 LDEETGWIAGVRVSPSTQGQHALIQKTMDGGQTWVTQSTNKEDILE------------DI 235
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGND 326
+ WA G +G++L TT+GG++W + + L SV F +EK G+ G D
Sbjct: 236 FFLDASMGWAVGENGIILHTTDGGESWTEQMSG--TEETLRSVGFADEKNGWATGGD 290
>gi|409407711|ref|ZP_11256162.1| oxidoreductase [Herbaspirillum sp. GW103]
gi|386433462|gb|EIJ46288.1| oxidoreductase [Herbaspirillum sp. GW103]
Length = 338
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 238 RGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI 297
RG + G + EVPV F + V + E WA G GV++ T +GG+TW
Sbjct: 70 RGNVILSDDGGQHWRQAREVPVD---FTLTAVSFVDDKEGWAVGHGGVVIHTVDGGQTWQ 126
Query: 298 REKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+++A ++ L++V F + G+ G +L+Q
Sbjct: 127 LQRSATDVDQPLFTVYFRDRLHGWAAGLWSLLVQ 160
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R ++ + DGG+ W A E ++ ++SF KEGW VG +++HT D
Sbjct: 67 VGARGNVILSDDGGQHWR-----QAREVPVDFTLTAVSFVDDKEGWAVGHGGVVIHTVDG 121
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G++W+ ++ + QP V R + GW A GLW L L ++ G T
Sbjct: 122 GQTWQLQRSATDVD------QPLF-TVYFRDRLHGWAA--GLWSL-----LVQTEDGGKT 167
Query: 252 EEFEEVPV----QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+PV + +L + D + A G++ ++ +GG+ W
Sbjct: 168 WTSLRLPVAPGSKRSDLNLLHLFAGQGDALYLAAEQGMVFRSHDGGQHW 216
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
+PVD L ++FV D G+ +G ++ T DGG+TW + D + +
Sbjct: 89 VPVD--FTLTAVSFVDD--KEGWAVGHGGVVIHTVDGGQTWQLQR----SATDVDQPLFT 140
Query: 169 ISFKGK-EGWIVGKPAILLHTSDAGESWE--RIPLS 201
+ F+ + GW G ++L+ T D G++W R+P++
Sbjct: 141 VYFRDRLHGWAAGLWSLLVQTEDGGKTWTSLRLPVA 176
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSA---EEEDFNYRFNSISFKGKEGWIVGKP 182
D HG+ G L++T+DGGKTW +P A + D N + + +G ++ +
Sbjct: 145 DRLHGWAAGLWSLLVQTEDGGKTWTSLRLPVAPGSKRSDLNL-LHLFAGQGDALYLAAEQ 203
Query: 183 AILLHTSDAGESWE 196
++ + D G+ W+
Sbjct: 204 GMVFRSHDGGQHWD 217
>gi|90416277|ref|ZP_01224209.1| Glycosyl hydrolase, BNR repeat [gamma proteobacterium HTCC2207]
gi|90332002|gb|EAS47216.1| Glycosyl hydrolase, BNR repeat [marine gamma proteobacterium
HTCC2207]
Length = 307
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 28/193 (14%)
Query: 141 ETKDGGKTWAPRSIPSAEE-EDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP 199
++D G++W S+P+ E+ +D + + E W+VG + +LH+S AG+ WE
Sbjct: 96 HSRDQGESWQTYSLPTDEDVQDID------CTQSNELWVVGSFSTMLHSSAAGQEWEVTT 149
Query: 200 LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPV 259
L AV G+ A G L ++K G + + V +
Sbjct: 150 LDE---------DAMLTAVTFSSAEQGYSAG-------EFGLLAVTKDAG--DSWTVVDL 191
Query: 260 QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKK 319
S L V + W G GV++++ +GG++W E+ + +Y + EK
Sbjct: 192 ISDELYPLAVHFDLAGNGWVGGLQGVIMRSRDGGESW--ERTETPTESPIYKFLMVGEKL 249
Query: 320 GFVLGNDGVLLQY 332
G+ GV+LQ+
Sbjct: 250 -IATGDQGVILQW 261
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
G+ G L TKD G +W + S E F+ GW+ G +++
Sbjct: 165 EQGYSAGEFGLLAVTKDAGDSWTVVDLISDELYPLAVHFD----LAGNGWVGGLQGVIMR 220
Query: 188 TSDAGESWERIPLSSQLP 205
+ D GESWER ++ P
Sbjct: 221 SRDGGESWERTETPTESP 238
>gi|422623312|ref|ZP_16691139.1| BNR repeat-containing glycosyl hydrolase, partial [Pseudomonas
syringae pv. pisi str. 1704B]
gi|330946922|gb|EGH47756.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 170
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 24/187 (12%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYR--FNSIS 170
P LL F D+ HG+ +G +L + DGGK+W + + ED +
Sbjct: 3 PTRQLLTAVFFVDE-QHGWAVGHDAQVLASSDGGKSW------NKQFEDLKREAPLLDVW 55
Query: 171 FKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA 229
FK G +G +LL T+D G+ WE + S +L + Q H +A+
Sbjct: 56 FKDLDNGLAIGAYGLLLSTADGGQHWEDV--SDRLDNED---QYHLNGIAQ-------VK 103
Query: 230 DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKT 289
D GL+++ G +F S+ G T E P Q FG+ +G A G G L ++
Sbjct: 104 DAGLFIVGEAGSMFRSRDEGQTWEKIAGPYQGSLFGV--IGTAQPSTLLAYGLRGNLFRS 161
Query: 290 TNGGKTW 296
++ G +W
Sbjct: 162 SDFGDSW 168
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 7/142 (4%)
Query: 75 TATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLG 134
TA + G Q S + +W + + + LLD+ F DL++G +G
Sbjct: 9 TAVFFVDEQHGWAVGHDAQVLASSDGGKSWNKQFEDLKREAPLLDVWF--KDLDNGLAIG 66
Query: 135 TRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG-WIVGKPAILLHTSDAGE 193
LL T DGG+ W S E+ Y N I+ G +IVG+ + + D G+
Sbjct: 67 AYGLLLSTADGGQHWEDVSDRLDNED--QYHLNGIAQVKDAGLFIVGEAGSMFRSRDEGQ 124
Query: 194 SWERI--PLSSQLPGDMAFWQP 213
+WE+I P L G + QP
Sbjct: 125 TWEKIAGPYQGSLFGVIGTAQP 146
>gi|26989532|ref|NP_744957.1| BNR repeat-containing protein [Pseudomonas putida KT2440]
gi|24984406|gb|AAN68421.1|AE016474_10 BNR domain protein [Pseudomonas putida KT2440]
Length = 320
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 104/250 (41%), Gaps = 53/250 (21%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED---FNYRFNSISFKG 173
L ++FV D G+ +G +L T DGG++W + + A EED F F F
Sbjct: 83 LTGVSFV--DAKRGWAVGHWGAILITTDGGESWQVQRL--ATEEDRPLFAVHF----FNA 134
Query: 174 KEGWIVGKPAILLHTSDAGESWERIPLSSQLP------------------GDMAFWQPHN 215
++G VG +++L T D G++W PL Q P G + H
Sbjct: 135 RQGVAVGLWSLVLTTEDGGQTWSEQPL--QAPPGAKRADLNLMGLFADSRGTLYATAEHG 192
Query: 216 RAVARRIQNMGWR-----ADGGLW---------LLVRGGGLFLSKGTGITEEFEEVPVQS 261
+ + Q WR +G LW LL+ G L +G+ + F VP QS
Sbjct: 193 QVLHSEDQGKNWRYLDTGYEGTLWAGAVLADGRLLLGGQRGTLLQGSADGKGFHRVPTQS 252
Query: 262 RG--FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKK 319
+G + G R A G G+ +++++GG ++ + AD + +L + F E
Sbjct: 253 KGSVTCVAVAGSR----VLAVGLDGLSVQSSDGGHSFQETQTADGL--SLTAALFNAEGV 306
Query: 320 GFVLGNDGVL 329
+ GV+
Sbjct: 307 PVLFSRRGVM 316
>gi|358639923|dbj|BAL27219.1| putative glycosyl hydrolase [Azoarcus sp. KH32C]
Length = 313
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 45/174 (25%)
Query: 132 LLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
+ G R +L + D GK W +P + + ++ F ++GW VG ++L T+D
Sbjct: 14 VAGQRGHILYSDDAGKNWTQAEVPVSSD------LTAVHFPTSQKGWAVGHDGVVLATTD 67
Query: 191 AGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
G+SW + QL G R + + +Q+ R + GTGI
Sbjct: 68 GGKSWVK-----QLDG---------RGLGQIMQDYYARFE----------------GTGI 97
Query: 251 -TEEFEEVPVQSRGFG-------ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ EE+ ++ F L V + S+ + +A G ++ T++GGKTW
Sbjct: 98 AARQLEELRAAAQRFAEEGADKPFLSVWFDSETDGYAVGVFNLIFHTSDGGKTW 151
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 229 ADGGLWLLVRG--GGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
A G L+V G G + S G EVPV S + V + + + WA G GV+
Sbjct: 6 ARAGERLVVAGQRGHILYSDDAGKNWTQAEVPVSSD---LTAVHFPTSQKGWAVGHDGVV 62
Query: 287 LKTTNGGKTWIRE 299
L TT+GGK+W+++
Sbjct: 63 LATTDGGKSWVKQ 75
>gi|91780687|ref|YP_555894.1| hypothetical protein Bxe_C0646 [Burkholderia xenovorans LB400]
gi|91693347|gb|ABE36544.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
Length = 363
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 40/205 (19%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R ++ + + G+TW R +PS + D +++F EGW VG ++LH+S+
Sbjct: 65 VGQRGVIVVSDNRGQTW--RQVPSPVQSDLT----AVTFPSATEGWAVGHDGVILHSSNG 118
Query: 192 GESWERIPLSSQLPGDMA---FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT 248
G++W + QL G +A F + A A N
Sbjct: 119 GQTWVK-----QLDGRIANARFVAFYRAAAASGNTNA----------------------A 151
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIA 306
+ ++ E LDV + + +A G G++ TT+GGK W+ E +
Sbjct: 152 PLLQQEERNAKAGASLPWLDVWFDTPQRGYAVGSFGIVAVTTDGGKNWLPGLEYVDNPDF 211
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQ 331
NL +++ IN F+ G G + +
Sbjct: 212 LNLNAIRGINGDI-FIAGERGTVFR 235
>gi|288961900|ref|YP_003452210.1| hypothetical protein AZL_c03730 [Azospirillum sp. B510]
gi|288914180|dbj|BAI75666.1| hypothetical protein AZL_c03730 [Azospirillum sp. B510]
Length = 375
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 43/202 (21%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
+G R ++ + D G +W +P + ++SF GW VG ++LH+ D
Sbjct: 74 VGERGLIVLSDDKGASWRQAKVP------VSVTLTAVSFPTPTLGWAVGHYGVVLHSRDG 127
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
GESW R QL G A R VA + DG L R I
Sbjct: 128 GESWVR-----QLDGLAA-----ARIVADSVPK-----DGSSPRLGR-----------IV 161
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANL 309
EE + P LD+ + ++D + G G+ L+T +GGK+W + + +L
Sbjct: 162 EEGPDKP-------FLDLFFPTKDAGFIVGAFGLALRTDDGGKSWSSLTLDLPNPDGLHL 214
Query: 310 YSVKFINEKKGFVLGNDGVLLQ 331
Y+++ + ++ G G+L++
Sbjct: 215 YAIRAGGDAL-YIAGEQGLLMR 235
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK 172
P LD+ F D GF++G L T DGGK+W+ ++ + + +I
Sbjct: 165 PDKPFLDLFFPTKD--AGFIVGAFGLALRTDDGGKSWSSLTLDLPNPDGLH--LYAIRAG 220
Query: 173 GKEGWIVGKPAILLHTSDAGESWERI 198
G +I G+ +L+ + D G S+ R+
Sbjct: 221 GDALYIAGEQGLLMRSDDGGRSFRRL 246
>gi|255292481|dbj|BAH89597.1| glycosyl hydrolase [uncultured bacterium]
Length = 323
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 109/277 (39%), Gaps = 36/277 (12%)
Query: 58 SSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVL 117
+ + SS+ Q+ Q + I+L + G+ S + +W R + P +
Sbjct: 36 TEEQAKSSIRTDQY-QQMMMVDGVITLVGSAGVV---LTSRDEGQSWTRQVVEGAPNFI- 90
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
I PD L + + + D G +W R +P+ E+ W
Sbjct: 91 -GITACPD--GRLLALSFDRRIWSSTDQGSSWNGRELPTGED-----LVGLTCSPDGSWW 142
Query: 178 IVGKPAILLHTSDAGESWERIPLSSQ-LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
+ G LL ++D GESWE L L ++F+ A A+ GL+
Sbjct: 143 VTGSFTTLLKSTDQGESWEEQTLGEDALLTHISFFTGQEGIAA---------AEFGLFFK 193
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
GG +++E + + L V + + W G +GV++ T +GG+TW
Sbjct: 194 TTDGG----------QQWELIGNIGQELYPLTVYFSDPQQGWVGGLNGVIIHTEDGGQTW 243
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
E+ I + +YS F + + + G+ G +L YL
Sbjct: 244 --EEQPSGIESPIYSF-FGSGNRLYASGDHGNVLSYL 277
>gi|26988743|ref|NP_744168.1| BNR repeat-containing protein [Pseudomonas putida KT2440]
gi|24983536|gb|AAN67632.1|AE016393_1 BNR domain protein [Pseudomonas putida KT2440]
Length = 319
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 106/262 (40%), Gaps = 36/262 (13%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP 113
S S+ + + + RQ + TA L G Q S + + W + + +
Sbjct: 48 SDDQGSTWTQARVPTRQLL--TAVFFLDDKRGWAVGHDAQILASTDGGATWSKQFEDLAR 105
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
LLD+ F+ D HGF +G LLET DGG+ W + + + N I+
Sbjct: 106 EAPLLDVTFL--DAQHGFAVGAYGALLETTDGGQHW--QDVAERLDNPDQLHLNGIAQVR 161
Query: 174 KEG-WIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD 230
G +IVG+ + ++D G++W ++ P L G + +P
Sbjct: 162 DAGLFIVGEQGGMFRSTDNGQTWAKVQGPYEGSLFGVIGTARPQT--------------- 206
Query: 231 GGLWLLVRG--GGLFLSKGTGITEEFEEVPVQ-SRG---FGILDVGYRSQDEAWAAGGSG 284
LL G G LF S G + ++ + ++ +RG FG+ G G
Sbjct: 207 ----LLAYGLRGNLFRSSDFG--DNWQPIELKAARGTLEFGLAGATLVDDGTLVLVGNGG 260
Query: 285 VLLKTTNGGKTWIREKAADNIA 306
+L++T+ G+T+ AD +A
Sbjct: 261 SVLRSTDDGQTFSVYNRADRLA 282
>gi|407790904|ref|ZP_11137994.1| BNR repeat-containing protein [Gallaecimonas xiamenensis 3-C-1]
gi|407202188|gb|EKE72182.1| BNR repeat-containing protein [Gallaecimonas xiamenensis 3-C-1]
Length = 338
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 84/220 (38%), Gaps = 53/220 (24%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW------APRSIPSA 157
W++ PV +L + F+ D + GF+ G TLL+T+DGG++W AP P
Sbjct: 65 WQQQVSPVSS--LLTQVHFL--DKDTGFVAGHDATLLKTEDGGRSWRIVYRNAPLQKPLM 120
Query: 158 EEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD---------- 207
FN EG VG + L TSD GESW++ L D
Sbjct: 121 ALHFFN---------ASEGIAVGAYGLFLRTSDGGESWQKEVHEGFLKEDDLSYLQEIRE 171
Query: 208 ---------MAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK-GTGITEEFEEV 257
+ QPH A+A + + + GL L G + TG F V
Sbjct: 172 DSEEDYQAELEAAQPHLNALAGQGDTLLLGGEMGLVALSTDKGQHWQRLDTGYPGSFFAV 231
Query: 258 PVQSRGFGILDVGYRSQDEAWAAGG-SGVLLKTTNGGKTW 296
V R + W GG G L +T++GG W
Sbjct: 232 SVLDR-------------DNWLVGGLRGHLFRTSDGGGHW 258
>gi|443242836|ref|YP_007376061.1| glycosyl hydrolase, BNR protein [Nonlabens dokdonensis DSW-6]
gi|442800235|gb|AGC76040.1| glycosyl hydrolase, BNR protein [Nonlabens dokdonensis DSW-6]
Length = 684
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 51/217 (23%)
Query: 119 DIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGW 177
D+ F+ D N GF G +T L T DGG TW P +P +DF + N I+F +G
Sbjct: 159 DVYFL--DSNTGFACGDDRTFLSTTDGGITWNPIILPI---QDF-WPLNKITFSSATDGL 212
Query: 178 IVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLV 237
++ + +T+DAG + W A R+ ++ + + + +V
Sbjct: 213 LIASGGFIFYTNDAGLT----------------WNSATSGTAERLNDVDYINNQ--YYIV 254
Query: 238 RGGGLFL-SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS---------GVLL 287
G+ L S G+T +++ +D+ ++ G+ ++L
Sbjct: 255 GNDGIVLNSTDLGLTWSLQDL---------------GRDDLYSIAGTPSILYIGSEEIVL 299
Query: 288 KTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
++T+ G TW D ++L F N G ++G
Sbjct: 300 QSTDNGTTW-NSHLEDFTMSDLEQASFANSNTGLIVG 335
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 23/168 (13%)
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHT 188
GF+ G + +T DGG W + + E + Y +S G+ G L T
Sbjct: 126 EGFVSGGNGEIWKTTDGGANWTQQVSGTTENINDVYFLDS-----NTGFACGDDRTFLST 180
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT 248
+D G +W I L Q FW P N+ A GL L+ GG +F +
Sbjct: 181 TDGGITWNPIILPIQ-----DFW-PLNKITFS-------SATDGL-LIASGGFIFYTNDA 226
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
G+T R + DV Y + ++ + G G++L +T+ G TW
Sbjct: 227 GLTWNSATSGTAER---LNDVDYIN-NQYYIVGNDGIVLNSTDLGLTW 270
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 255 EEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKF 314
++ PV S F + + + ++ E + +GG+G + KTT+GG W ++ + N+ V F
Sbjct: 107 QQFPVLS--FRLTSIFFLNELEGFVSGGNGEIWKTTDGGANWTQQVSG--TTENINDVYF 162
Query: 315 INEKKGFVLGNDGVLL 330
++ GF G+D L
Sbjct: 163 LDSNTGFACGDDRTFL 178
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
W + +P+ L I F G L+ + + T D G TW + +AE
Sbjct: 186 TWNPIILPIQDFWPLNKITFSS--ATDGLLIASGGFIFYTNDAGLTWNSATSGTAE---- 239
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
R N + + + +IVG I+L+++D G +W
Sbjct: 240 --RLNDVDYINNQYYIVGNDGIVLNSTDLGLTW 270
>gi|397691265|ref|YP_006528519.1| serine/threonine protein kinase with PASTA sensor(s) [Melioribacter
roseus P3M]
gi|395812757|gb|AFN75506.1| serine/threonine protein kinase with PASTA sensor(s) [Melioribacter
roseus P3M]
Length = 635
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 27/223 (12%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
+ V G + F+ D GF+ G+ +++T +GG +W + + + ++ F+ F++
Sbjct: 438 VQVRGGYTFFRVKFI--DEQTGFITGSDGLIMKTVNGGISWY-KVVTNTKDLIFDLDFSN 494
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR 228
+ G VG ++L T + GESW I N I+++
Sbjct: 495 ----DRHGIAVGWNGLMLTTENGGESWHPI---------------ENVKFDNYIKSIDIT 535
Query: 229 ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLK 288
+G + L GG + + +++E V G G+ V + S++ A G G+L+
Sbjct: 536 KEG--YCLAAGGDATILRSINYGKDWEIEKVAELG-GLQKVLFISENYAVVTGSKGILMF 592
Query: 289 TTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+ + G TW I +N+ ++ E++ F++G +G++ +
Sbjct: 593 SKDKGNTW--NLIESRIYSNMNDLELSPERELFMVGVNGMIFK 633
>gi|299534142|ref|ZP_07047493.1| glycosyl hydrolase, BNR repeat protein [Comamonas testosteroni S44]
gi|298717789|gb|EFI58795.1| glycosyl hydrolase, BNR repeat protein [Comamonas testosteroni S44]
Length = 394
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 20/171 (11%)
Query: 87 TTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGG 146
T G + S++ + W++ I +++ +AF PD GF +G +L TKDGG
Sbjct: 53 TAGALGEILYSDDKGAHWQQAQIKEQRQALIVSMAFAPDRKT-GFAVGHEGWILRTKDGG 111
Query: 147 KTWAPRSIPSAEEEDFNYRFNSISFKGKEGWI-VGKPAILLHTSDAGESWERIPLSSQLP 205
TW + E+ SI+ WI VG + + D G++WE++PL S++
Sbjct: 112 STWEEVAF----SEENGEPLMSIARLPSGDWISVGAFGRAITSRDNGQTWEQLPLPSEVE 167
Query: 206 GDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL-SKGTGITEEFE 255
+ + + DG WL+V GL + S+ +G + + E
Sbjct: 168 -------------DKHMNRIASSEDGKHWLIVGERGLVIKSEDSGASWQIE 205
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
++++ S WE V + G L+ IA +P +G + ++D G+TW +P
Sbjct: 106 RTKDGGSTWEEVAFSEENGEPLMSIARLPS--GDWISVGAFGRAITSRDNGQTWEQLPLP 163
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP 199
S E+ R S S GK IVG+ +++ + D+G SW+ P
Sbjct: 164 SEVEDKHMNRIAS-SEDGKHWLIVGERGLVIKSEDSGASWQIEP 206
>gi|87306586|ref|ZP_01088733.1| BNR/Asp-box repeat protein [Blastopirellula marina DSM 3645]
gi|87290765|gb|EAQ82652.1| BNR/Asp-box repeat protein [Blastopirellula marina DSM 3645]
Length = 1021
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 88/225 (39%), Gaps = 38/225 (16%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQT-----LLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS 170
L D AF D NHGF + L ET+DGG++W P +I D + + S++
Sbjct: 126 CLHDAAFA--DANHGFAVADPSPIYPTGLFETRDGGRSWRPLAI------DKPHPWRSLA 177
Query: 171 FKGKEGWIVGKPAILLHTSDAGESW-ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA 229
G +LL +D +W + +P D RR +
Sbjct: 178 LLPGRG-------VLLSAADGATAWFDEGVYRESIPADQ----------NRRTHQVALDL 220
Query: 230 DGGLWLLVRGGGLFLSKGTGI--TEEFEEVP-VQSRGFGILDVGYRSQDEAWAAGGSGVL 286
G ++ G + S GI T +P V R F V S D G G L
Sbjct: 221 QGATAVVGDAGLVMTSTDRGISWTSRTSNLPGVTGRQFDAHGVSI-SGDRITIVGSPGSL 279
Query: 287 -LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
L + +GG W E + I L++V F+N G+ +G+ G +L
Sbjct: 280 TLTSHDGGANW--ETSPTGIRTPLHAVTFVNSTNGWAVGSLGTIL 322
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 83/218 (38%), Gaps = 48/218 (22%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKE 175
L D+ F + + GF +G + T+DGG W IPS + +ISF +
Sbjct: 36 LHDVHF--QNPHTGFAVGDHGVIWSTRDGGSHW--EQIPSG----VDVSLQAISFADDQR 87
Query: 176 GWIVG---------KPAILLHTSDAGESWERIP-LSSQLPGDMAFWQP-HNRAVA----- 219
GWIVG ++L T D G SW I L D AF H AVA
Sbjct: 88 GWIVGGQITPYSRISRGVVLRTIDGGRSWREISNLGVPCLHDAAFADANHGFAVADPSPI 147
Query: 220 -------RRIQNMGWRA----DGGLW---LLVRGGGLFLSKGTGITEEFEE------VPV 259
R WR W L+ G G+ LS G T F+E +P
Sbjct: 148 YPTGLFETRDGGRSWRPLAIDKPHPWRSLALLPGRGVLLSAADGATAWFDEGVYRESIPA 207
Query: 260 -QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
Q+R V Q G +G+++ +T+ G +W
Sbjct: 208 DQNR--RTHQVALDLQGATAVVGDAGLVMTSTDRGISW 243
>gi|378950865|ref|YP_005208353.1| glycosyl hydrolase [Pseudomonas fluorescens F113]
gi|359760879|gb|AEV62958.1| glycosyl hydrolase [Pseudomonas fluorescens F113]
Length = 367
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK 172
P LD+ F D HG+++G + T+DGG++W P + N I
Sbjct: 165 PDKPFLDLYF--SDRLHGYVVGAYNQIYRTEDGGRSWQPWMRYVDNPQGLN--LYGIRAL 220
Query: 173 GKEGWIVGKPAILLHTSDAGESWERI 198
G + W+VG+ +LL +SDAG+S++ +
Sbjct: 221 GNDLWLVGERGLLLRSSDAGQSFQAL 246
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 36/202 (17%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G TW +P + ++ F ++GW VG ++LHT D
Sbjct: 67 VGERGIVLLSDDAGVTWRQAKVP------VSVSLTAVQFVDAEQGWAVGHLGVVLHTRDG 120
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
GE+W++ QL G RA+A +Q + G L++ +
Sbjct: 121 GETWQK-----QLDG--------QRAIALAVQFAERDVN------QPDGASHLAQARRML 161
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR-EKAADNIAA-NL 309
++ + P LD+ + + + G + +T +GG++W + DN NL
Sbjct: 162 DDGPDKP-------FLDLYFSDRLHGYVVGAYNQIYRTEDGGRSWQPWMRYVDNPQGLNL 214
Query: 310 YSVKFINEKKGFVLGNDGVLLQ 331
Y ++ + +++G G+LL+
Sbjct: 215 YGIRALGNDL-WLVGERGLLLR 235
>gi|395652045|ref|ZP_10439895.1| hypothetical protein Pext1s1_25852 [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 372
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 35/203 (17%)
Query: 133 LGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
+G R + + D G TW R +P + +++F EGW VG ++LH++D
Sbjct: 67 VGERGIVRLSDDRGHTWRQARHVP------VSVALTAVAFVSASEGWAVGHSGVVLHSTD 120
Query: 191 AGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
GE+W R QL G+ Q + A G L +
Sbjct: 121 GGETWTR-----QLEGNQV------------AQIVAQDARERAAAGEAGADQRLRSAEAL 163
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAAN 308
E+ + P LDV + S + + G G+ L+T +GG +W + + + +
Sbjct: 164 VEDGPDKP-------FLDVAFVSATQGYVVGAYGLALQTHDGGASWQSLMGQVPNPRGRH 216
Query: 309 LYSVKFINEKKGFVLGNDGVLLQ 331
LY V+ + +++ + G G L +
Sbjct: 217 LYQVR-LRDQQVLLCGEQGALFR 238
>gi|56478375|ref|YP_159964.1| BNR/Asp-box repeat-containing protein [Aromatoleum aromaticum EbN1]
gi|56314418|emb|CAI09063.1| BNR/Asp-box repeat protein [Aromatoleum aromaticum EbN1]
Length = 326
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ ++W+ + + +D VLL + F+ D G++ G T DGG++W P ++ S
Sbjct: 113 SDDGGASWKLLEV-LDERPVLLSVHFL--DAERGYVTGAYGVAFRTADGGRSWTPMAVGS 169
Query: 157 AEEEDFNYRFNSISFKGKEG--WIVGKPAILLHTSDAGESWERI 198
++ DF+ N + F ++G +I G+ + ++D G SW ++
Sbjct: 170 GQDADFH--LNHL-FSVRDGTLFIAGESGLAFRSTDRGASWTKL 210
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 88 TGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGK 147
G Y +S + + W++ PV +L + FV D HG+ +G +L + DGG
Sbjct: 63 VGDYGMIVRSTDGGNIWQQAEAPVS--ALLTAVHFV--DERHGWAVGHGGVILGSDDGGA 118
Query: 148 TWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
+W + + F + G++ G + T+D G SW + + S D
Sbjct: 119 SWKLLEVLDERPVLLSVHF----LDAERGYVTGAYGVAFRTADGGRSWTPMAVGSGQDAD 174
Query: 208 M 208
Sbjct: 175 F 175
>gi|398909867|ref|ZP_10654758.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM49]
gi|398187255|gb|EJM74603.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM49]
Length = 363
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 94/204 (46%), Gaps = 34/204 (16%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D GK W +P + + +++F +GW VG ++LH+SDA
Sbjct: 61 VGQRGHILFSDDAGKHWQQAVVPVSAD------LTAVNFPTATQGWAVGNDGVVLHSSDA 114
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVAR-RIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
G +W++ L + G++ H A+A+ N W ++G +
Sbjct: 115 GATWKK-QLDGRQIGELLI--KHYSALAKAEPGNEQWPQ-------------LATEGQRL 158
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAAN 308
++ + P +LDV + + + G ++L+T +GG++W +++ + + +
Sbjct: 159 LDQGADKP-------LLDVWFANDKTGYVVGVFNLILRTEDGGQSWTPFQDRTDNPQSLH 211
Query: 309 LYSVKFINEKKGFVLGNDGVLLQY 332
L ++ + ++ G G+LL++
Sbjct: 212 LNAIASTGDAL-YIAGEQGLLLKW 234
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D G+++G +L T+DGG++W P + + + N+I+ G
Sbjct: 167 LLDVWFAND--KTGYVVGVFNLILRTEDGGQSWTPFQDRTDNPQSLH--LNAIASTGDAL 222
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAFWQPHNRAVARRIQNMGWR 228
+I G+ +LL D+ + + +P Q PG++ + + W
Sbjct: 223 YIAGEQGLLLKWDDSAQRFNAVPTPYQGSFFGVLGKPGEVLVYGLRGNVLRSTDGGQSWS 282
Query: 229 ----------------ADGGLWLLVRGGGLFLSKGTGITEEFEEVP 258
A G L +GG + +S+GTG + P
Sbjct: 283 ALETGLHVSITAGLIDARGNYRLFTQGGQMLVSQGTGAQLHLVQQP 328
>gi|296123553|ref|YP_003631331.1| photosystem II stability/assembly factor [Planctomyces limnophilus
DSM 3776]
gi|296015893|gb|ADG69132.1| Uncharacterized photosystem II stability/assembly factor-like
protein [Planctomyces limnophilus DSM 3776]
Length = 1120
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 121 AFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYR---FNSISFKGKEGW 177
AFV D G+L+G T+L T +GG W +P E R F + G+ W
Sbjct: 260 AFVTKD-ERGWLVGDGATVLTTTNGGIVW---DLPQGEFPPAARRLMDFRGVHGLGEHVW 315
Query: 178 IVGKP-AILLHTSDAGESWERIPLSSQLPGDMAFWQP------HNRAVARRIQNMGW--- 227
IVG P +++ H+S+AG++WE I P + + P + A + ++G
Sbjct: 316 IVGSPGSVIWHSSNAGQAWENISTGETAPLEAVRFVPTTADQLEHAATGYAVGHLGLILK 375
Query: 228 -RADGGLWLLVRGGG 241
G W +RGGG
Sbjct: 376 TTDSGKTWKALRGGG 390
>gi|251772037|gb|EES52609.1| conserved protein of unknown function [Leptospirillum
ferrodiazotrophum]
Length = 381
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D +HG + G +TLL T DGG TW P ++P +N++ G ++ G +L
Sbjct: 232 DSSHGLVAGWHRTLLRTSDGGATWTPVTVPMQRVTRQKPSYNALYAAGGTIYLAGDHGLL 291
Query: 186 LHTSDAGESWERI 198
++D G S+ I
Sbjct: 292 FSSTDGGASFSPI 304
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
+S + + W V + P L ++FV D G+ G + L T DGG W S+P
Sbjct: 164 RSSDEGAHWSSVVLSPAP-RFLSSVSFV--DARTGYAAGAQGALYRTTDGGGRWTSLSLP 220
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQ 203
+ E + + G + G LL TSD G +W + + Q
Sbjct: 221 TREN-----LYAVLFLDSSHGLVAGWHRTLLRTSDGGATWTPVTVPMQ 263
>gi|149178611|ref|ZP_01857197.1| hypothetical protein PM8797T_07347 [Planctomyces maris DSM 8797]
gi|148842537|gb|EDL56914.1| hypothetical protein PM8797T_07347 [Planctomyces maris DSM 8797]
Length = 1061
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 24/173 (13%)
Query: 166 FNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQN 224
+++ F GK GW VG ++ T D G +W+ + P +++
Sbjct: 52 LHAVQFLGKNTGWAVGDRGVIRKTEDGGRTWQFVASPVDCP---------LKSICFLTNQ 102
Query: 225 MGWRADGGLWL---LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAG 281
+GW A GG L +G LF G +E VQ R + V + DE G
Sbjct: 103 IGWIAGGGTAAHGHLNQGVLLFTKDGGQTWQEL----VQQRLPRLHHVRFFGMDEGVVIG 158
Query: 282 GSGV-----LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
S V + KTT+GG+TW + +A S F + G V G+ G +
Sbjct: 159 DSSVQHATGVFKTTDGGQTW--QDVTGYESAGFRSAAFFDVNTGLVAGSQGRM 209
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG---- 324
V + ++ WA G GV+ KT +GG+TW + A + L S+ F+ + G++ G
Sbjct: 55 VQFLGKNTGWAVGDRGVIRKTEDGGRTW--QFVASPVDCPLKSICFLTNQIGWIAGGGTA 112
Query: 325 -----NDGVLL 330
N GVLL
Sbjct: 113 AHGHLNQGVLL 123
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 17/88 (19%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVG------ 180
N G+ +G R + +T+DGG+TW + P + SI F + GWI G
Sbjct: 61 NTGWAVGDRGVIRKTEDGGRTWQFVASP------VDCPLKSICFLTNQIGWIAGGGTAAH 114
Query: 181 ---KPAILLHTSDAGESWERIPLSSQLP 205
+LL T D G++W+ + + +LP
Sbjct: 115 GHLNQGVLLFTKDGGQTWQEL-VQQRLP 141
>gi|119896328|ref|YP_931541.1| hypothetical protein azo0036 [Azoarcus sp. BH72]
gi|119668741|emb|CAL92654.1| conserved hypothetical BNR domain protein [Azoarcus sp. BH72]
Length = 385
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 29/208 (13%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDAG 192
G R T++ + DGG++W ++P A ++ F + GW VG ++LH+ D+G
Sbjct: 66 GARGTIVYSDDGGRSWTQAAVPVA------VMLTALHFPTPQLGWAVGHDGVILHSRDSG 119
Query: 193 ESWERIPLSSQLPGDMAFW---QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTG 249
SW R +Q M W + A R L GL G
Sbjct: 120 ASWARQFDGNQANAQMLAWAQTRVEAARAALEAAPAPQREAAEDALAAAEDGL-----AG 174
Query: 250 ITEEFEEVPVQSRGFG----ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAAD 303
I Q+ GFG + V +R E +A G G+ TT+GG+ W ++ +
Sbjct: 175 IE--------QTAGFGPSRPFMSVWFRDAREGYAVGAFGMAFATTDGGEHWTLFADRLPN 226
Query: 304 NIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+LY+V + + G G++L+
Sbjct: 227 PEDLHLYAVASPAPEVVLIAGERGLVLR 254
>gi|392953159|ref|ZP_10318713.1| hypothetical protein WQQ_27850 [Hydrocarboniphaga effusa AP103]
gi|391858674|gb|EIT69203.1| hypothetical protein WQQ_27850 [Hydrocarboniphaga effusa AP103]
Length = 346
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W +V +PV L + FV D +G+ +G T+L T DGGKTW ++ +E+ F
Sbjct: 97 WAQVAVPVR--ATLNALTFV--DEQNGWAVGHDATILRTTDGGKTWHLQNFEPEKEQAF- 151
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
+ + + G+ VG + T+D G++W I
Sbjct: 152 --LDVLFVDAQTGYAVGAFGLFYGTTDGGDNWAEI 184
>gi|410628341|ref|ZP_11339064.1| BNR repeat-containing protein [Glaciecola mesophila KMM 241]
gi|410152205|dbj|GAC25833.1| BNR repeat-containing protein [Glaciecola mesophila KMM 241]
Length = 332
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 43/223 (19%)
Query: 7 LSEPMMLVKPSLSSLFAPRLNRT----NAQAQQPRFISTSRACSLPSSDSSSSSSSSSSS 62
L P+ V+ + SS AP ++++ AQ+ + R + S+D + S
Sbjct: 13 LLAPISSVQAAQSSFQAPLVDQSLLLDIAQSGEQLIAVGERGHIIRSTDGQAWQQMDVPS 72
Query: 63 SSSLNRRQFVSQ---TATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLD 119
+S+L F+ Q I GL WE + + LLD
Sbjct: 73 TSTLTGVYFIGQQGWAVGHDFVILHTQNNGL------------DWEIQHFAPEQERPLLD 120
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWA----PRSIPSAEEEDFN---------YR- 165
+ F + N G +G L T+DGGK+W+ + A+++ N Y+
Sbjct: 121 VVFF--NQNEGIAIGAYGAFLRTEDGGKSWSNELHAEFVNQADQDYLNELRLEDEAFYKE 178
Query: 166 --------FNSISFKGKEGWIVGKPAILLHTSDAGESWERIPL 200
NS+S G E ++ G+ +L +SD G +W+R+ +
Sbjct: 179 ELAAILPHLNSVSVSGNEVYLAGEAGLLAMSSDKGHTWKRMDI 221
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 27/154 (17%)
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWER--IPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
I+ G++ VG+ ++ ++D G++W++ +P +S L G I G
Sbjct: 40 IAQSGEQLIAVGERGHIIRSTD-GQAWQQMDVPSTSTLTG------------VYFIGQQG 86
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEE-VPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
W A G ++++ ++ G+ E + P Q R +LDV + +Q+E A G G
Sbjct: 87 W-AVGHDFVILH------TQNNGLDWEIQHFAPEQERP--LLDVVFFNQNEGIAIGAYGA 137
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKK 319
L+T +GGK+W E A+ + N ++NE +
Sbjct: 138 FLRTEDGGKSWSNELHAEFV--NQADQDYLNELR 169
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 103/277 (37%), Gaps = 65/277 (23%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI 169
P+ +LLDIA + L +G R ++ + DG + W +PS +
Sbjct: 30 PLVDQSLLLDIAQSGEQL---IAVGERGHIIRSTDG-QAWQQMDVPSTS------TLTGV 79
Query: 170 SFKGKEGWIVGKPAILLHTSDAGESWER---IPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
F G++GW VG ++LHT + G WE P + D+ F+ N +A
Sbjct: 80 YFIGQQGWAVGHDFVILHTQNNGLDWEIQHFAPEQERPLLDVVFFN-QNEGIAIGAYGAF 138
Query: 227 WRA-DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFG---------ILDVGYRSQDE 276
R DGG F+++ + E+ ++ F L+ S +E
Sbjct: 139 LRTEDGGKSWSNELHAEFVNQAD--QDYLNELRLEDEAFYKEELAAILPHLNSVSVSGNE 196
Query: 277 AWAAGGSGVLLKTTNGGKTWIR--------------EKAADNIAANLYSVKF-------- 314
+ AG +G+L +++ G TW R ++ D IA L F
Sbjct: 197 VYLAGEAGLLAMSSDKGHTWKRMDIDYHGSFFNIAKTESGDLIATGLRGNVFTYNNELQN 256
Query: 315 -----------------INEKKGFVLGNDGVLLQYLG 334
+NE + +LGN+G ++ G
Sbjct: 257 WQAVDAGSSASMNGIVSVNESRTVLLGNNGAVVTMQG 293
>gi|426407818|ref|YP_007027917.1| hypothetical protein PputUW4_00905 [Pseudomonas sp. UW4]
gi|426266035|gb|AFY18112.1| hypothetical protein PputUW4_00905 [Pseudomonas sp. UW4]
Length = 363
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 93/204 (45%), Gaps = 34/204 (16%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G W +P++ + +++F +GW VG ++LH+SDA
Sbjct: 61 VGQRGHILFSDDSGNHWQQAVVPASAD------LTAVNFPTATQGWAVGNDGVVLHSSDA 114
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVAR-RIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
G +W++ L + G++ H A+A+ N W +G +
Sbjct: 115 GATWKK-QLDGRQIGELLI--KHYSALAKAEPGNEQWPQ-------------LAMEGQRL 158
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAAN 308
++ + P +LDV + ++ + G ++L+T +GG+TW +++ + +
Sbjct: 159 ADQGADKP-------LLDVWFANEKTGYVVGVFNLILRTDDGGQTWTPFQDRTDNPQGFH 211
Query: 309 LYSVKFINEKKGFVLGNDGVLLQY 332
L ++ + ++ G G+LL++
Sbjct: 212 LNAIASTGDAL-YIAGEQGLLLKW 234
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 34/198 (17%)
Query: 91 YEQPAKSEEALSAWERVYIP----VDPGV--VLLDIAFVPDDLNHGFLLGTRQTLLETKD 144
Y AK+E W ++ + D G LLD+ F + G+++G +L T D
Sbjct: 135 YSALAKAEPGNEQWPQLAMEGQRLADQGADKPLLDVWFANE--KTGYVVGVFNLILRTDD 192
Query: 145 GGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQ- 203
GG+TW P + + F+ N+I+ G +I G+ +LL D+ + + +P Q
Sbjct: 193 GGQTWTPFQDRTDNPQGFH--LNAIASTGDALYIAGEQGLLLKWDDSAQRFNAVPTPYQG 250
Query: 204 -------LPGDMAFWQPHNRAVARRIQNMGWRA-DGGLW---------------LLVRGG 240
PG++ + + W A D GL L +GG
Sbjct: 251 SFFGVLGKPGEVLVYGLRGNVLRSTDGGQSWTALDSGLHVSITAGLIDARGNYRLFTQGG 310
Query: 241 GLFLSKGTGITEEFEEVP 258
+ +S+GTG P
Sbjct: 311 QMLVSQGTGAQMHLVRQP 328
>gi|421477601|ref|ZP_15925417.1| BNR/Asp-box repeat protein [Burkholderia multivorans CF2]
gi|400226296|gb|EJO56382.1| BNR/Asp-box repeat protein [Burkholderia multivorans CF2]
Length = 325
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP-SAEEEDFNYRFNSISFKGKEGWI 178
+ FV D HG+ +G +L T DGG+TW + + S ++ F+ F S + +G
Sbjct: 93 VTFV--DAGHGWAVGQWGVILATSDGGETWHKQRLDLSTDQPLFSVAFTSPN----DGIA 146
Query: 179 VGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
VG +++L T D G++WER+ L P R + ++ + L+++
Sbjct: 147 VGLWSLMLATHDGGKTWERVTLPK---------PPGGGKADRNLYHIFFDGKAALYVVSE 197
Query: 239 GGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-SGVLLKTTNGGKTW 296
G + S G + V + G G L G GG G + ++T+GG TW
Sbjct: 198 SGMVLKSADRGANWSY----VATGGKGTLWTGVALPGGRIVVGGLLGSMFESTDGGATW 252
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 13/89 (14%)
Query: 133 LGTRQTLLETKDGGKTW--APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTS 189
+G +L + D G+TW AP S+P A ++++F GW VG+ ++L TS
Sbjct: 62 VGEHGLVLLSDDDGRTWRQAP-SVPVAAT------LSAVTFVDAGHGWAVGQWGVILATS 114
Query: 190 DAGESW--ERIPLSSQLP-GDMAFWQPHN 215
D GE+W +R+ LS+ P +AF P++
Sbjct: 115 DGGETWHKQRLDLSTDQPLFSVAFTSPND 143
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
V + WA G GV+L T++GG+TW +++ + L+SV F + G +G
Sbjct: 93 VTFVDAGHGWAVGQWGVILATSDGGETWHKQRLDLSTDQPLFSVAFTSPNDGIAVG 148
>gi|71906981|ref|YP_284568.1| glycosyl hydrolase [Dechloromonas aromatica RCB]
gi|71846602|gb|AAZ46098.1| Glycosyl hydrolase, BNR repeat [Dechloromonas aromatica RCB]
Length = 366
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 84/201 (41%), Gaps = 30/201 (14%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP-RSIPSAEEEDFNYRFNSISFKGKE 175
L DIA D HG +G +L T DGGKTW R +P ++ + R G
Sbjct: 107 LQDIAVW--DGEHGLAVGNEGVVLRTADGGKTWQEVRDVPKSQVANKLSRVRVAP--GGV 162
Query: 176 GWIVGKPAILLHTSDAGESWERI-PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
+ G+ LL T D GE W+R+ P Q D+A P R VA
Sbjct: 163 AVVSGEMGALLGTQDFGEHWKRLRPEEDQAWNDVAL-LPDGRRVA--------------- 206
Query: 235 LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGK 294
+ G + LS G T + PV+ ++ V + A G G +L T +GGK
Sbjct: 207 -VGEFGRITLSDDFGATWVDIKTPVE---VSLMSVSFGDALNGLAVGLEGTVLITRDGGK 262
Query: 295 TWIREKAAD-NIAANLYSVKF 314
W K+ D ++ +LY + +
Sbjct: 263 NW---KSLDVDLHDHLYDIAW 280
>gi|146293293|ref|YP_001183717.1| BNR repeat-containing protein [Shewanella putrefaciens CN-32]
gi|386313968|ref|YP_006010133.1| BNR repeat-containing protein [Shewanella putrefaciens 200]
gi|145564983|gb|ABP75918.1| BNR repeat protein [Shewanella putrefaciens CN-32]
gi|319426593|gb|ADV54667.1| BNR repeat-containing protein [Shewanella putrefaciens 200]
Length = 337
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 41/248 (16%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W++V P V L + F+ L G+ +G T+L T+DGG+TW + S E+ F
Sbjct: 69 WQQVITPT--SVQLTKVFFINSTL--GWAVGHDATILHTQDGGQTWQLQMQSSEVEKPF- 123
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESW-----------ERIPLSSQLPG------ 206
+ + +EG +G + T D G +W E + ++L G
Sbjct: 124 --LDILFLNEREGMAIGAYGLFYRTWDGGVNWRAEFHEELLAEEDVAYLAELKGSDEAAY 181
Query: 207 --DMAFWQPH-NRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
+ A PH NR +A + DG L L+ G + S GIT
Sbjct: 182 LDERASLLPHFNRIIALK--------DGRLILVGELGLVASSDDKGITFTRTSFDYDGSM 233
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
F +++ +D + G G + KT + W + + +++ V I+++ +++
Sbjct: 234 FNAIEM----RDAIYVMGLRGNIFKTDLSLEQW--HEIEMPVQSSINGVMAISDETLYLV 287
Query: 324 GNDGVLLQ 331
GN GV++Q
Sbjct: 288 GNAGVVIQ 295
>gi|308049592|ref|YP_003913158.1| glycosyl hydrolase family protein [Ferrimonas balearica DSM 9799]
gi|307631782|gb|ADN76084.1| glycosyl hydrolase, BNR repeat protein [Ferrimonas balearica DSM
9799]
Length = 337
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 28/241 (11%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDF 162
W++ P+ V+L + F D G+ +G T+L T DGG++W +++P+ ++
Sbjct: 65 WQQAASPL--SVMLTSVTFA--DEQRGWAVGHDVTVLATSDGGQSWQIQQNLPNKDKP-- 118
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESW------------ERIPLSSQLPGDMAF 210
+ ++ G E VG + ++D G SW +R L+ D A
Sbjct: 119 --LLDVLALDGNEAIAVGAYGLFYRSTDGGRSWREEFHDELLFEEDREYLNELKAEDEAL 176
Query: 211 WQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT-EEFEEVPVQSRGFGILDV 269
+ A+ + A+G L+LL G + S G E+ EE+ S +D+
Sbjct: 177 YLDERSAILPHFNRIKRLANGDLFLLGEMGFMARSSDNGHHWEKLEEIYFGS----FMDL 232
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ A G G +T NGG W I + + S + + + ++ N GVL
Sbjct: 233 VELAPGHLLAVGLRGNAFRTDNGGLDW--RPVETGIQSTINSGIALEDGRVVLVANGGVL 290
Query: 330 L 330
L
Sbjct: 291 L 291
>gi|421870680|ref|ZP_16302312.1| BNR repeat protein [Burkholderia cenocepacia H111]
gi|358069586|emb|CCE53190.1| BNR repeat protein [Burkholderia cenocepacia H111]
Length = 276
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR--S 153
K+ + WE + L + F+ D NHG +G +L T DGGKTW R +
Sbjct: 64 KTTDGGETWEIQRLATSEDRPLFGVHFI--DANHGVAVGLWSLILVTDDGGKTWTKREAT 121
Query: 154 IPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
+P+ ++ D N F S E + + LL + D G +WE +
Sbjct: 122 LPNGKKSDLNL-FGLFSNGNGEIFATAEKGQLLISRDKGNTWESV 165
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + + VPV S + V + WA G G +LKTT+GG+TW
Sbjct: 18 GIVLLSDNRGATYRQAKSVPVSST---LTSVSFIDARTGWAVGHWGAILKTTDGGETWEI 74
Query: 299 EKAADNIAANLYSVKFINEKKGFVLG 324
++ A + L+ V FI+ G +G
Sbjct: 75 QRLATSEDRPLFGVHFIDANHGVAVG 100
>gi|358636892|dbj|BAL24189.1| hypothetical protein AZKH_1876 [Azoarcus sp. KH32C]
Length = 325
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
L + F D HG +G LL T DGGKTW S+P+ + R F + G
Sbjct: 132 LFSVHFT--DAQHGTAVGLWSLLLTTTDGGKTWDKVSLPAPPNDTRADRNLMHVFADRRG 189
Query: 177 --WIVGKPAILLHTSDAGESWERIP 199
++VG+ +LH++D G++W P
Sbjct: 190 DLFVVGERGTVLHSADRGQTWAYRP 214
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 103/224 (45%), Gaps = 24/224 (10%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED-FNYRFN 167
+PV+ L ++F D +G+ +G +L T+DGG+TW + + ++E+ F+ F
Sbjct: 83 VPVN--ATLTGVSFA--DERNGWAVGHWGVILHTEDGGETWTSQRMETSEDRPLFSVHFT 138
Query: 168 SISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
+ G VG ++LL T+D G++W+++ L + P++ R + ++
Sbjct: 139 ----DAQHGTAVGLWSLLLTTTDGGKTWDKVSLPA---------PPNDTRADRNLMHVFA 185
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLL 287
G L+++ G + S G T + P RG + AG G L
Sbjct: 186 DRRGDLFVVGERGTVLHSADRGQTWAYR--PTGYRG-SFWSGTALADGTLLVAGLRGSLY 242
Query: 288 KTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++++GG+TW K +++ V + ++ +G DG+ L+
Sbjct: 243 RSSDGGETW--HKVVTGTQSSITGVVPLVDRV-LAVGLDGLTLE 283
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYS 311
+ +VPV + + V + + WA G GV+L T +GG+TW ++ + L+S
Sbjct: 78 RQASKVPVNAT---LTGVSFADERNGWAVGHWGVILHTEDGGETWTSQRMETSEDRPLFS 134
Query: 312 VKFINEKKGFVLG 324
V F + + G +G
Sbjct: 135 VHFTDAQHGTAVG 147
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G R +L + D G +W A + N +SF + GW VG ++LHT D
Sbjct: 61 VGDRGVVLLSDDRGGSW-----RQASKVPVNATLTGVSFADERNGWAVGHWGVILHTEDG 115
Query: 192 GESW--ERIPLSSQLP 205
GE+W +R+ S P
Sbjct: 116 GETWTSQRMETSEDRP 131
>gi|330809520|ref|YP_004353982.1| hypothetical protein PSEBR_a2684 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423697173|ref|ZP_17671663.1| glycosyl hydrolase, BNR repeat protein [Pseudomonas fluorescens
Q8r1-96]
gi|327377628|gb|AEA68978.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|388002979|gb|EIK64306.1| glycosyl hydrolase, BNR repeat protein [Pseudomonas fluorescens
Q8r1-96]
Length = 367
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK 172
P LD+ F D HG+++G + T DGG++W P + N I
Sbjct: 165 PDKPFLDLYF--SDRLHGYVVGAYNQIYRTDDGGRSWQPWMRHVDNPQGLN--LYGIRAL 220
Query: 173 GKEGWIVGKPAILLHTSDAGESWERI 198
G + W+VG+ +LL ++DAG+S++ +
Sbjct: 221 GNDLWLVGERGLLLRSTDAGQSFQAL 246
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 36/202 (17%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L D G W +P + ++ F ++GW VG ++LHT D
Sbjct: 67 VGERGIVLLCDDAGVNWRQAKVP------VSVSLTAVQFVDAEQGWAVGHLGVVLHTQDG 120
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
GE+W++ QL G RA+A +Q + G L++ +
Sbjct: 121 GETWQK-----QLDG--------QRAIALAVQFAERDVN------QPDGASHLAQARRML 161
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR-EKAADNIAA-NL 309
++ + P LD+ + + + G + +T +GG++W + DN NL
Sbjct: 162 DDGPDKP-------FLDLYFSDRLHGYVVGAYNQIYRTDDGGRSWQPWMRHVDNPQGLNL 214
Query: 310 YSVKFINEKKGFVLGNDGVLLQ 331
Y ++ + +++G G+LL+
Sbjct: 215 YGIRALGNDL-WLVGERGLLLR 235
>gi|448732613|ref|ZP_21714883.1| BNR repeat-containing glycosyl hydrolase [Halococcus salifodinae
DSM 8989]
gi|445804380|gb|EMA54636.1| BNR repeat-containing glycosyl hydrolase [Halococcus salifodinae
DSM 8989]
Length = 315
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 30/183 (16%)
Query: 127 LNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILL 186
+G T+ L + DGG TW +P +E ++ R S G+ + PA L
Sbjct: 38 FGNGVFAATQSGLFRSTDGGATWTDLGVP--RDEVYSVR---PSLDGERLYAGTHPAHLY 92
Query: 187 HTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD-----------GGLWL 235
+SD G+SW + +LP + P +R A ++++G D GG+ +
Sbjct: 93 VSSDGGDSWRELTGLQELPSREEWRLPRHRNEA-HVRSLGTHPDAPERIVAGIEVGGVHV 151
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
GG + + G+ ++ V V+ E + A G L +T + G++
Sbjct: 152 SDDGGDTWTERRDGLHDDVHHVLVRGA-------------EEYVASCGGGLYRTCDAGRS 198
Query: 296 WIR 298
W R
Sbjct: 199 WTR 201
>gi|78059956|ref|YP_366531.1| hypothetical protein Bcep18194_C6841 [Burkholderia sp. 383]
gi|77964506|gb|ABB05887.1| conserved hypothetical protein [Burkholderia sp. 383]
Length = 321
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI-PSAEEEDFNYRFN 167
+PV L +AF D HG+ +G T+L T DGG+TW + + S ++ F+ F
Sbjct: 79 VPV--AATLSAVAFA--DAQHGWAVGQWGTILATDDGGETWTTQRLDTSVDQPLFSVLFT 134
Query: 168 SISFKGKEGWIVGKPAILLHTSDAGESWERIPL 200
S ++G+ VG +++L T D G++W ++ L
Sbjct: 135 SP----QDGFAVGLWSLMLQTHDGGKTWAKVTL 163
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + VPV + + V + WA G G +L T +GG+TW
Sbjct: 61 GIVVLSDDDGKTWRQARRVPVAAT---LSAVAFADAQHGWAVGQWGTILATDDGGETWTT 117
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++ ++ L+SV F + + GF +G ++LQ
Sbjct: 118 QRLDTSVDQPLFSVLFTSPQDGFAVGLWSLMLQ 150
>gi|399521056|ref|ZP_10761824.1| Ycf48-like protein;Precursor [Pseudomonas pseudoalcaligenes CECT
5344]
gi|399110967|emb|CCH38383.1| Ycf48-like protein;Precursor [Pseudomonas pseudoalcaligenes CECT
5344]
Length = 382
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W + + ++ LLDI F DL G+ +G LLET DGG+ W S + ED
Sbjct: 161 WTKQFEDLEREAPLLDIWF--KDLETGYAVGAYGALLETTDGGENWEDVS-DRLDNED-A 216
Query: 164 YRFNSISFKGKEG-WIVGKPAILLHTSDAGESWERI 198
Y N+I+ G +IVG+ + + D GE+WE +
Sbjct: 217 YHLNAITAVKDAGLFIVGELGGMFRSRDWGETWETV 252
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 25/158 (15%)
Query: 179 VGKPAILLHTSDAGESWE--RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WL 235
VG +L+++D G+SW+ ++P L H V Q + DGGL W
Sbjct: 104 VGDRGHILYSNDQGQSWQQAKVPTRQMLTSLFFVDAKHGWVVGHDAQILA-TTDGGLTW- 161
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
T++FE++ ++ +LD+ ++ + +A G G LL+TT+GG+
Sbjct: 162 ---------------TKQFEDLEREAP---LLDIWFKDLETGYAVGAYGALLETTDGGEN 203
Query: 296 W--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
W + ++ + A +L ++ + + F++G G + +
Sbjct: 204 WEDVSDRLDNEDAYHLNAITAVKDAGLFIVGELGGMFR 241
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 95 AKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI 154
A++ A A + P +LLD+ + L +G R +L + D G++W +
Sbjct: 69 AETSAAADAGYAIESPKAVHSLLLDVVNTGERL---VAVGDRGHILYSNDQGQSWQQAKV 125
Query: 155 PSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWER 197
P+ + S+ F K GW+VG A +L T+D G +W +
Sbjct: 126 PTRQ------MLTSLFFVDAKHGWVVGHDAQILATTDGGLTWTK 163
>gi|359448389|ref|ZP_09237927.1| BNR/Asp-box repeat protein [Pseudoalteromonas sp. BSi20480]
gi|358045798|dbj|GAA74176.1| BNR/Asp-box repeat protein [Pseudoalteromonas sp. BSi20480]
Length = 331
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 47/191 (24%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDFNYRFNSISF 171
P VLL D+ N+G+ G T++ T DGG W ++ PS ++ + I F
Sbjct: 70 PTQVLLTAVDFSDE-NNGWACGHDATIINTVDGGNNWQLQQAKPSLDKPCLD-----ILF 123
Query: 172 KGK-EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQN---MGW 227
K K EG+ VG + HT+D G+ WE+ L S L + +R ++N G+
Sbjct: 124 KDKLEGFAVGAYGMFYHTTDGGKQWEKRFLDSLLFSE-------DRDYLNDLKNNDPEGY 176
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLL 287
A+ I F + S G ++ G G+L
Sbjct: 177 EAETA----------------SILPHFNRIEQTSEGLMLV-------------GEMGLLA 207
Query: 288 KTTNGGKTWIR 298
++T+ GKTW+R
Sbjct: 208 RSTDNGKTWLR 218
>gi|395498937|ref|ZP_10430516.1| hypothetical protein PPAM2_22758 [Pseudomonas sp. PAMC 25886]
Length = 351
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 49/221 (22%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK-GK 174
VL+DIA L +G + ++ + DGG+ W +P++ S+SF
Sbjct: 44 VLIDIAQAGARL---VAVGEQGLIVLSDDGGQHWRQAPVPTSAS------LTSVSFATAA 94
Query: 175 EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
+GW VG ++LHT D GESW+ QL G + A+R+ +
Sbjct: 95 QGWAVGHAGVVLHTVDGGESWQL-----QLDG---------KGAAQRVLDA--------- 131
Query: 235 LLVRGG----GLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTT 290
VR L G + + P L V + ++ + G G++L T
Sbjct: 132 --VRAAPDASARQLKVAQGFVADGADKP-------WLAVHFSNERQGTVVGAFGLILHTE 182
Query: 291 NGGKTWIR-EKAADNIAAN-LYSVKFINEKKGFVLGNDGVL 329
+GG +W DN A N LY++ + + FV G G L
Sbjct: 183 DGGVSWQSWVDRLDNPAGNHLYAIA-VQGPRIFVAGEQGAL 222
>gi|358636959|dbj|BAL24256.1| hypothetical protein AZKH_1943 [Azoarcus sp. KH32C]
Length = 391
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 32/202 (15%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R ++ + DGG +W +P + + ++ F +GW VG ++LH+S+
Sbjct: 92 VGQRGHIVVSADGGASWQQSRVPVSSD------LTAVFFVDAAKGWAVGHDGVILHSSNG 145
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G+SWE + L ++ + A G R L++
Sbjct: 146 GKSWE-LQLDGLRANELLVAAMERKYGAAAASEEGQR--------------LLAEARRYK 190
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR--EKAADNIAANL 309
E+ + P LDV + +A G ++ +T +GGKTW ++ + NL
Sbjct: 191 EQGADKP-------FLDVWFADGSTGYAVGAYNLIFRTDDGGKTWEPWFDRTENPKLFNL 243
Query: 310 YSVKFINEKKGFVLGNDGVLLQ 331
YSV+ +V G G+L++
Sbjct: 244 YSVR-PGPGGLYVAGEGGLLMR 264
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 265 GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
G+L RS + A G G ++ + +GG +W + + ++++L +V F++ KG+ +G
Sbjct: 77 GLLLAVARSGERLVAVGQRGHIVVSADGGASWQQSRVP--VSSDLTAVFFVDAAKGWAVG 134
Query: 325 NDGVLLQ 331
+DGV+L
Sbjct: 135 HDGVILH 141
>gi|398950234|ref|ZP_10673656.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM33]
gi|398158342|gb|EJM46692.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM33]
Length = 363
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 92/206 (44%), Gaps = 38/206 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G R +L + D G+ W ++P + + +++F +GW VG ++LH+SDA
Sbjct: 61 VGQRGHILFSDDAGQHWQQAAVPVSAD------LTAVNFSTPAQGWAVGNDGVVLHSSDA 114
Query: 192 GESWERIPLSSQLPGDM--AFWQPHNRAVAR-RIQNMGWRADGGLWLLVRGGGLFLSKGT 248
G +W++ QL G A H A+A N W +G
Sbjct: 115 GATWKK-----QLDGRQIGALLVKHYTALASAEPGNEQWPQ-------------LAMEGQ 156
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIA 306
+ ++ + P +LDV + ++ + G ++L+T +GG+TW +++ +
Sbjct: 157 RLVDQGADKP-------LLDVWFANERTGYVVGVFNLILRTDDGGQTWTPFQDRTDNPQG 209
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQY 332
+L ++ + ++ G G+LL++
Sbjct: 210 FHLNAIASTGDAL-YIAGEQGLLLKW 234
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 28/166 (16%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F + G+++G +L T DGG+TW P + + F+ N+I+ G
Sbjct: 167 LLDVWFANE--RTGYVVGVFNLILRTDDGGQTWTPFQDRTDNPQGFH--LNAIASTGDAL 222
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAFWQPHNRAVARRIQNMGWR 228
+I G+ +LL D+ + + +P Q PG++ + + W
Sbjct: 223 YIAGEQGLLLKWDDSAQRFNAVPTPYQGSFFGVLGKPGEVLVYGLRGNVLRSTDGGQSWT 282
Query: 229 A-DGGLW---------------LLVRGGGLFLSKGTGITEEFEEVP 258
A D GL L +GG + +S+GTG P
Sbjct: 283 ALDSGLHVSITAGLIDARGNYRLFTQGGQMLVSQGTGAQMHLVRQP 328
>gi|284041443|ref|YP_003391373.1| oxidoreductase [Spirosoma linguale DSM 74]
gi|283820736|gb|ADB42574.1| oxidoreductase, putative [Spirosoma linguale DSM 74]
Length = 341
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 99/246 (40%), Gaps = 36/246 (14%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
ALS W+ + D + +A PD ++ GT+ T + T DGGKTW ++P A+
Sbjct: 18 ALSQWQPQPVTTDASFRAVSVA-SPD---IAWIGGTKGTFVRTVDGGKTWQTGTVPDAQT 73
Query: 160 EDFNYRFNSISFKGKEGWIVGK------PAILLHTSDAGESWERIPLSSQ---LPGDMAF 210
DF + + + +++ A + T+DAG+ W + + Q + F
Sbjct: 74 CDFR---DVQAIDAQTAYLMSAGPAEQGQARIYKTTDAGQHWTLLYQTQQKGVFFDGIDF 130
Query: 211 WQPHNRAVARRIQNMGW----RADGG-LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFG 265
W + V + W DGG W V L L E E + G
Sbjct: 131 WDEQHGIVFSDPIDGKWVMLTTDDGGKTWQPVSLASLPLM-------ETNEAAFAASGTS 183
Query: 266 ILDVGYRSQDEAWAAGGSGV---LLKTTNGGKTWIREKA--ADNIAANLYSVKFINEKKG 320
++ G R+ W A G G + ++T+ G+TW A L+ ++F K G
Sbjct: 184 LVVQGKRN---VWIASGGGTFGRVFRSTDRGRTWTVSNTPLPAGEATGLFGMRFFTNKIG 240
Query: 321 FVLGND 326
V+G +
Sbjct: 241 VVVGGN 246
>gi|407792822|ref|ZP_11139858.1| BNR/Asp-box repeat-containing protein [Idiomarina xiamenensis
10-D-4]
gi|407217080|gb|EKE86916.1| BNR/Asp-box repeat-containing protein [Idiomarina xiamenensis
10-D-4]
Length = 394
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI 169
PV P LLD+ + D F +G T L + DGG+ W +SI E + N++
Sbjct: 195 PVKP---LLDVYAM--DAERIFAVGAYNTFLYSADGGRNW--QSIAGRLENSGGFHLNAM 247
Query: 170 SFKGKEGWIVGKPAILLHTSDAGESWERI 198
+ +G +IVG+ L + DAG++W+ +
Sbjct: 248 TGQGDTLFIVGEAGQLFRSDDAGQTWQTL 276
>gi|149910082|ref|ZP_01898729.1| BNR/Asp-box repeat protein [Moritella sp. PE36]
gi|149806807|gb|EDM66769.1| BNR/Asp-box repeat protein [Moritella sp. PE36]
Length = 392
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 30/155 (19%)
Query: 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGK 174
+ D+ F D +G ++G +LETKDGG W E F NS++
Sbjct: 192 IAFFDVLFNAAD--YGLVIGAYGAMLETKDGGNNWEYIGFQVPNPEGF--HLNSLTIDDN 247
Query: 175 EG-WIVGKPAILLHTSDAGESWERIPL-----------------SSQLPGDM-------A 209
+IVG+ + + TSD G+SW + + S L G+M
Sbjct: 248 NNIYIVGEAGLGMATSDQGQSWRSLNIDYLGSLFGIEVNGPSLYSYGLRGNMFASQDQGE 307
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
WQ + V I + W + L LLV GGL L
Sbjct: 308 TWQHLDTGVTNHIFSADWLNNKEL-LLVGAGGLKL 341
>gi|77360613|ref|YP_340188.1| hypothetical protein PSHAa1672 [Pseudoalteromonas haloplanktis
TAC125]
gi|76875524|emb|CAI86745.1| putative orphan protein [Pseudoalteromonas haloplanktis TAC125]
Length = 331
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYS 311
++ E VP Q + V + +++ WA G ++ TTNGGKTW ++A I
Sbjct: 64 QQAESVPTQVL---LTAVDFTNENNGWACGHDATIINTTNGGKTWHLQQAKPEIDKPCLD 120
Query: 312 VKFINEKKGFVLGNDGVLLQ 331
+ F +E G+ +G G+ Q
Sbjct: 121 ILFKDELHGYAVGAYGMFYQ 140
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDFNYRFNSISFKG 173
V+L + F + N+G+ G T++ T +GGKTW ++ P ++ + I FK
Sbjct: 73 VLLTAVDFTNE--NNGWACGHDATIINTTNGGKTWHLQQAKPEIDKPCLD-----ILFKD 125
Query: 174 K-EGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
+ G+ VG + TSD G+ W++ L S L D
Sbjct: 126 ELHGYAVGAYGMFYQTSDGGKHWQKRFLDSLLFSD 160
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 24/103 (23%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS--------------------- 156
LDI F D+L HG+ +G +T DGGK W R + S
Sbjct: 119 LDILF-KDEL-HGYAVGAYGMFYQTSDGGKHWQKRFLDSLLFSDDREYLSDLKEHDPEGY 176
Query: 157 -AEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
AE FN I +VG+ ++ ++DAG +W+R+
Sbjct: 177 EAETASILPHFNRIEQTPDGLMLVGEMGLMAKSTDAGLTWQRV 219
>gi|334134674|ref|ZP_08508178.1| BNR/Asp-box repeat protein [Paenibacillus sp. HGF7]
gi|333607829|gb|EGL19139.1| BNR/Asp-box repeat protein [Paenibacillus sp. HGF7]
Length = 410
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 85/204 (41%), Gaps = 35/204 (17%)
Query: 117 LLDIAFVPDDLNHGFLLG-TRQTL--LETKDGGKTWAPRSIPSAEEEDFNYRF-NSISFK 172
LLD + D G+ G T Q+L T DGG+TW S PSA F+ + +ISF
Sbjct: 67 LLDFHLI--DERTGYAWGVTNQSLRMYRTLDGGQTWQNVSPPSAGNFKFSPGYGQAISFL 124
Query: 173 GKE-GWIV-----GKPAILLHTSDAGESWERIPLSSQL-PGDMAFWQPHNRAVARRIQNM 225
K+ GWIV GK + T + G SW+ + L Q+ P + F P N
Sbjct: 125 DKQRGWIVRSDLEGKQTTIWQTENGGGSWKAVDLPEQMNPVVLDFQTPQN---------- 174
Query: 226 GW--------RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEA 277
GW +AD G L G + T + +E + F L G+ S +
Sbjct: 175 GWMLSITDPSKADSGHILYSTSNGGSTWQRTADAQLPQEGTITGLTFQNLRTGWLSME-- 232
Query: 278 WAAGGSGVLLKTTNGGKTWIREKA 301
G + ++ +GG+TW K
Sbjct: 233 --VKGQPKMYRSEDGGRTWKESKV 254
>gi|264677482|ref|YP_003277388.1| glycosyl hydrolase, BNR repeat-containing protein [Comamonas
testosteroni CNB-2]
gi|262207994|gb|ACY32092.1| glycosyl hydrolase, BNR repeat protein [Comamonas testosteroni
CNB-2]
Length = 335
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 20/171 (11%)
Query: 87 TTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGG 146
T G + S++ + W++ I +++ +AF PD GF +G +L TKDGG
Sbjct: 53 TAGALGEILYSDDKGAHWQQAQIKEQRQALIVSMAFAPDR-KTGFAVGHEGWILRTKDGG 111
Query: 147 KTWAPRSIPSAEEEDFNYRFNSISFKGKEGWI-VGKPAILLHTSDAGESWERIPLSSQLP 205
TW + E SI+ WI VG + + D G++WE++PL S++
Sbjct: 112 STWEEVAFSKENGEP----LMSIARLPSGDWISVGAFGRAITSRDNGQTWEQLPLPSEVE 167
Query: 206 GDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL-SKGTGITEEFE 255
+ + + DG WL+V GL + S+ +G + + E
Sbjct: 168 -------------DKHMNRIASSEDGKHWLIVGERGLVIKSEDSGASWQIE 205
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
++++ S WE V + G L+ IA +P +G + ++D G+TW +P
Sbjct: 106 RTKDGGSTWEEVAFSKENGEPLMSIARLPS--GDWISVGAFGRAITSRDNGQTWEQLPLP 163
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP 199
S E+ R S S GK IVG+ +++ + D+G SW+ P
Sbjct: 164 SEVEDKHMNRIAS-SEDGKHWLIVGERGLVIKSEDSGASWQIEP 206
>gi|221068316|ref|ZP_03544421.1| glycosyl hydrolase [Comamonas testosteroni KF-1]
gi|220713339|gb|EED68707.1| glycosyl hydrolase [Comamonas testosteroni KF-1]
Length = 335
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
+S++ S WE V + G L+ IA +P +G + ++D G+TW P ++P
Sbjct: 106 RSKDGGSTWEEVAFSKENGEPLMSIARLPS--GDWISVGAFGRAITSRDNGQTWEPLALP 163
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP 199
+ E+ R S GK IVG+ +++ + D+G SW+ P
Sbjct: 164 AEVEDKHMNRIASTE-DGKHWLIVGERGLVIRSEDSGTSWQIEP 206
>gi|333913409|ref|YP_004487141.1| BNR repeat-containing protein [Delftia sp. Cs1-4]
gi|333743609|gb|AEF88786.1| BNR domain-containing protein [Delftia sp. Cs1-4]
Length = 335
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 36/220 (16%)
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-K 172
G VLLD+A + +G R +L + D G TW S+P + +++F
Sbjct: 25 GGVLLDVAKSGKRI---VAVGERGVVLFSDDVGATWQQASVP------VSVTLTAVNFVD 75
Query: 173 GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGG 232
K GW+ G ++L TSD G +W R+ L + D+ W+ A ++ + R
Sbjct: 76 DKFGWVTGHAGVVLATSDGGGTW-RLQLEGKRAADL--WRAEVSAGSKNDDDSDKR---- 128
Query: 233 LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
L + + + + P LD+ + + + G G++ T +G
Sbjct: 129 -----------LQEAHRLVSDGPDKP-------FLDMHFFDRKRGFVIGAYGLIFATADG 170
Query: 293 GKTWIR-EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G+TW DN A + + ++ ++G G+LLQ
Sbjct: 171 GETWSPWMDRLDNPKALHLNALAVQGQRILIVGEQGLLLQ 210
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK 172
P LD+ F D GF++G + T DGG+TW+P + N+++ +
Sbjct: 140 PDKPFLDMHFF--DRKRGFVIGAYGLIFATADGGETWSPWM--DRLDNPKALHLNALAVQ 195
Query: 173 GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
G+ IVG+ +LL + D G+++ R LSS PG
Sbjct: 196 GQRILIVGEQGLLLQSVDGGKTFVR--LSSPYPG 227
>gi|254447012|ref|ZP_05060479.1| glycosyl hydrolase, BNR repeat [gamma proteobacterium HTCC5015]
gi|198263151|gb|EDY87429.1| glycosyl hydrolase, BNR repeat [gamma proteobacterium HTCC5015]
Length = 338
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 34/252 (13%)
Query: 88 TGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGK 147
G Y S++ S W + V V L + FV D G+ +G +L+T DGG+
Sbjct: 61 VGGYGNIVLSDDEGSTWRQAQ-SVPARVTLTAVDFV--DEKRGWAVGHDAVILKTIDGGE 117
Query: 148 TWAPRSIPSAEEE---DFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQL 204
W + EE + +R N G+ G+ +G + L ++D G+SW L+
Sbjct: 118 NWTRQYFAPEEERPLLEVQFREN-----GRIGYALGAYSFRLVSNDGGKSWVSKDLADNA 172
Query: 205 PGDMAF-WQPHNRAVARRIQNMGWRADGGLWLLVRGGGLF---LSKGTGITEEFEEVPVQ 260
D+ + H V +A G+W + G+ L KG E ++ +P
Sbjct: 173 ETDLGMPIEYHLHQVT--------KASNGVWYMSAEAGMAYRSLDKG----ETWDRIPPP 220
Query: 261 SRG--FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEK 318
G FG L + S G G + +T +GG W + A+ A L S +++
Sbjct: 221 YDGSFFGALPLLGES---VLMFGLQGSIYRTDDGGDDWT--EIANASTATLNSGLIMDDG 275
Query: 319 KGFVLGNDGVLL 330
++GNDG +L
Sbjct: 276 TVVLVGNDGAVL 287
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
+LDV R+ + A GG G ++ + + G TW R+ + L +V F++EK+G+ +G+
Sbjct: 48 LLDV-ERAGERLIAVGGYGNIVLSDDEGSTW-RQAQSVPARVTLTAVDFVDEKRGWAVGH 105
Query: 326 DGVLLQYL 333
D V+L+ +
Sbjct: 106 DAVILKTI 113
>gi|119898129|ref|YP_933342.1| hypothetical protein azo1838 [Azoarcus sp. BH72]
gi|119670542|emb|CAL94455.1| conserved hypothetical BNR domain protein [Azoarcus sp. BH72]
Length = 375
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R T+L + D G W A+ + ++ F + GW VG ++LH++D
Sbjct: 69 VGERGTVLLSDDNGARWR-----QADAVPVSVALTNVHFADAQHGWAVGHGGVVLHSADG 123
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G++W R QL G R A+R+ A G G L+ +
Sbjct: 124 GKTWVR-----QLEG---------REAAQRVLEAAQAAAAGDAAGDAAGARRLADAQRLV 169
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANL 309
E+ + P +LDV + + G G+ L T +GG++W I ++ D +L
Sbjct: 170 EDGPDKP-------LLDVHFVDAQRGFVVGAYGLALATEDGGRSWHSIMDRIGDPRGRHL 222
Query: 310 YSVKFINEKKGFVLGNDGVLL 330
Y++ + V+G G +
Sbjct: 223 YAIARQGARL-LVVGEQGAMF 242
>gi|348030800|ref|YP_004873486.1| BNR repeat-containing protein [Glaciecola nitratireducens FR1064]
gi|347948143|gb|AEP31493.1| BNR repeat-containing protein [Glaciecola nitratireducens FR1064]
Length = 384
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG--WIVGKPAILLHT 188
F G TLL++KD G+TW I + + + + N+I+ K G +IVG+ A+ +
Sbjct: 200 FATGAYGTLLQSKDNGQTW--EFINNRVDNESKFHLNAIT-KDANGNLFIVGENAVAAKS 256
Query: 189 SDAGESWERIPLS 201
SD GESWER+ LS
Sbjct: 257 SDNGESWERMDLS 269
>gi|381188639|ref|ZP_09896199.1| putative oxidoreductase [Flavobacterium frigoris PS1]
gi|379649277|gb|EIA07852.1| putative oxidoreductase [Flavobacterium frigoris PS1]
Length = 354
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 50/217 (23%)
Query: 138 TLLETKDGGKTWAPRSIPSAE-------EEDFNYRFNSISFKGKEGWIV--GKPAILLHT 188
+++ T+DGG TW IP+ E E F +I KG WIV GK A + H+
Sbjct: 157 SIIITRDGGNTW--NKIPANELPEIAEGEAAFAASNTNIVIKGNNTWIVSGGKKARVFHS 214
Query: 189 SDAGESWERIPLSSQLPGD-MA------FWQPHNRAVA-----RRIQNMGWRA---DGGL 233
SD G+SW R+ + + G MA F+ +A QN G +A DGG
Sbjct: 215 SDKGKSW-RVYNTPIVQGKAMAGIFTADFYDSEKGFIAGGDYEAPNQNFGNKAVTYDGGK 273
Query: 234 -WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
W L+ ++G G + +P S G ++ V G SG+ + +G
Sbjct: 274 NWELISE-----NQGFGYASCVQYIP-HSNGKSLVSV-----------GASGIHY-SCDG 315
Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
G +W ++ A+D NL++++F++ + G + V+
Sbjct: 316 GNSW-KQLASD---PNLFTIRFVDRQTAIAAGKNKVI 348
>gi|409427334|ref|ZP_11261845.1| hypothetical protein PsHYS_21835 [Pseudomonas sp. HYS]
Length = 358
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 40/205 (19%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
+G R +L + D G W +P + + N++SF E GW VG ++LH+ D
Sbjct: 58 VGPRGHILYSDDLGSHWQQAQVPVSAD------LNAVSFPTPELGWAVGNDGVILHSRDG 111
Query: 192 GESWERIPLSSQLPGD-MAFWQPHNRAVARRIQNMG--WRADGGLWLLVRGGGLFLSKGT 248
G WE+ QL +A++Q R Q G W A ++ +G
Sbjct: 112 GLRWEKQLDGRQLGAQALAYYQA-------RAQTGGDQWAA-------------WVGEGE 151
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIA 306
+ E + P +LDV + +A G ++L T +GG+ W E++ +
Sbjct: 152 RLVAEGADKP-------LLDVWFSDPLHGYAVGVFNLVLHTADGGQHWTPWLERSDNPQG 204
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQ 331
+L + ++ ++ G G+LL+
Sbjct: 205 LHLTGLASVDGAL-YISGEQGLLLK 228
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 66/178 (37%), Gaps = 36/178 (20%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D HG+ +G +L T DGG+ W P E D + +G
Sbjct: 162 LLDVWF--SDPLHGYAVGVFNLVLHTADGGQHWTPW----LERSDNPQGLHLTGLASVDG 215
Query: 177 --WIVGKPAILLHTSDAGESWERI--PLSSQL------PGDM----------------AF 210
+I G+ +LL S GE ++R+ P + PG + A
Sbjct: 216 ALYISGEQGLLLKLSADGERFQRLHTPYAGSYFGVIGKPGTLLAYGLRGHVLRSSDGGAR 275
Query: 211 WQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTG----ITEEFEEVPVQSRGF 264
WQP N + I A G WL + G L +S G + E PV F
Sbjct: 276 WQPVNTGLNTSITAASLDASGRFWLASQAGDLLVSSNDGARFSAVAQSERAPVSGVAF 333
>gi|392548617|ref|ZP_10295754.1| hypothetical protein PrubA2_19705 [Pseudoalteromonas rubra ATCC
29570]
Length = 332
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI 315
VPVQS + V + S+ + WA G +L T +GG++W ++ +I + F+
Sbjct: 69 HVPVQSL---LTSVTFASEKKGWACGHDATILNTDDGGQSWKIQQHLPDIEKPCLDITFV 125
Query: 316 NEKKGFVLGNDGVLLQ 331
NE+ G+ +G G++ +
Sbjct: 126 NEQIGYAVGAYGMMYE 141
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 24/104 (23%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI-------------------PSAE 158
LDI FV + + G+ +G + ET DGG+ W R I P+A
Sbjct: 120 LDITFVNEQI--GYAVGAYGMMYETTDGGQNWTKRFIDAFVHPDDVTYLAELKADDPAAY 177
Query: 159 EEDFNY---RFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP 199
E++ + FN++ G + + G+ + + DAG++W ++P
Sbjct: 178 EDETAFILPHFNTLLIDGSQYLLAGEMGLFAVSDDAGKNWRKLP 221
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-K 174
+L DI++ L +G T++ +KDG K+W +P S++F K
Sbjct: 36 LLTDISYTGAQL---VAVGKHGTIVTSKDG-KSWQQAHVP------VQSLLTSVTFASEK 85
Query: 175 EGWIVGKPAILLHTSDAGESWERIPLSSQLP 205
+GW G A +L+T D G+SW+ + LP
Sbjct: 86 KGWACGHDATILNTDDGGQSWK---IQQHLP 113
>gi|419954537|ref|ZP_14470674.1| glycosyl hydrolase [Pseudomonas stutzeri TS44]
gi|387968648|gb|EIK52936.1| glycosyl hydrolase [Pseudomonas stutzeri TS44]
Length = 379
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 43/209 (20%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G + + DGG TW P + + + F+ GWIVG ++LL+T+D
Sbjct: 76 VGLHGMIKRSTDGGTTWQQVQSPVSTD------LVQVRFRDPMNGWIVGHDSVLLNTTDG 129
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL-----SK 246
G +W S QL G +AR G RA+ G V G L S
Sbjct: 130 GLTW-----SVQLDG--------RTVLARLKAYYGERAEHG----VEGAAEMLQEVEFSM 172
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR--EKAADN 304
T T + P LDV + + G G++L++T+ G TW E+ +
Sbjct: 173 NTSATPDVLASP-------FLDVMFNEDKVGYVIGAFGLILRSTDDGATWDPWIEQTDNT 225
Query: 305 IAANLYSVKFINEKKG--FVLGNDGVLLQ 331
+LY ++E+ +++G G+L++
Sbjct: 226 RRMHLYG---LDERDDVFYIVGEQGLLMR 251
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
R+ D G G++ ++T+GG TW ++ ++ +L V+F + G+++G+D VLL
Sbjct: 68 RAGDVLVGVGLHGMIKRSTDGGTTW--QQVQSPVSTDLVQVRFRDPMNGWIVGHDSVLL 124
>gi|452963003|gb|EME68094.1| hypothetical protein H261_20215 [Magnetospirillum sp. SO-1]
Length = 287
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK 172
P +VL+ +AF + G +G L T+DGG TW +++P ED + N ++
Sbjct: 86 PDMVLMSLAF--ETPERGIAVGAYGAALRTEDGGATW--QAVPLGTGEDADRHLNHVAVS 141
Query: 173 -GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADG 231
G + + + ++D G SW + LP + W RI +G DG
Sbjct: 142 AGGTLLVAAEVGTIFRSADGGRSWSTV----TLPIKGSVW---------RILGLG---DG 185
Query: 232 GLWLLVRGGGLFLSKGTGIT 251
L GG LF S+ G+T
Sbjct: 186 SLLATAMGGRLFRSRDDGMT 205
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTW-IREKAADNIAANLYSVKFINEKKGFVLGNDG 327
V + + WAAG GV+LKT NGG+TW + +AA ++ L S+ F ++G +G G
Sbjct: 51 VAFTGPEIGWAAGHGGVILKTVNGGETWTLAHRAAPDMV--LMSLAFETPERGIAVGAYG 108
Query: 328 VLLQ 331
L+
Sbjct: 109 AALR 112
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 27/184 (14%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW--APRSIPSAEEEDFNYRFNSISFKG 173
+L +AF ++ G+ G +L+T +GG+TW A R+ P + S++F+
Sbjct: 47 MLTAVAFTGPEI--GWAAGHGGVILKTVNGGETWTLAHRAAP-------DMVLMSLAFET 97
Query: 174 KE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGG 232
E G VG L T D G +W+ +PL + D R + ++ A G
Sbjct: 98 PERGIAVGAYGAALRTEDGGATWQAVPLGTGEDAD------------RHLNHVAVSAGGT 145
Query: 233 LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
L + G +F S G + +P++ + IL +G S A A GG L ++ +
Sbjct: 146 LLVAAEVGTIFRSADGGRSWSTVTLPIKGSVWRILGLGDGSL-LATAMGGR--LFRSRDD 202
Query: 293 GKTW 296
G TW
Sbjct: 203 GMTW 206
>gi|398874358|ref|ZP_10629569.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM74]
gi|398195427|gb|EJM82474.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM74]
Length = 363
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F D G+++G +L T DGG TW P + + F+ N+I+ G
Sbjct: 167 LLDVWFAND--KTGYVVGVFNLILRTDDGGLTWTPFQDRTDNPQGFH--LNAIASTGDGV 222
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDMAFWQPHNRAVARRIQNMGWR 228
+I G+ +LL D+ + + +P Q PG++ + + W
Sbjct: 223 YIAGEQGLLLKWDDSAQRFNAVPTPYQGSFFGVLGKPGEVLIYGLRGNVLRSTDGGQSWT 282
Query: 229 ----------------ADGGLWLLVRGGGLFLSKGTGITEEFEEVP 258
A G L +GG + +S+GTG ++ P
Sbjct: 283 SLDTGLHVSITAGLIDARGNYRLFTQGGQMLVSQGTGAQLHLKQQP 328
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 90/206 (43%), Gaps = 38/206 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G W ++P++ + +++F +GW VG ++LH+SDA
Sbjct: 61 VGQRGHILFSDDSGNHWQQAAVPASAD------LTAVNFPTTTQGWAVGNDGVVLHSSDA 114
Query: 192 GESWERIPLSSQLPGDM--AFWQPHNRAVAR-RIQNMGWRADGGLWLLVRGGGLFLSKGT 248
G +W++ QL G A H A+A N W +G
Sbjct: 115 GATWQK-----QLDGRQIGALLVKHYTALASAEPGNEQWPQ-------------LAMEGQ 156
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIA 306
+ ++ + P +LDV + + + G ++L+T +GG TW +++ +
Sbjct: 157 RLADQGADKP-------LLDVWFANDKTGYVVGVFNLILRTDDGGLTWTPFQDRTDNPQG 209
Query: 307 ANLYSVKFINEKKGFVLGNDGVLLQY 332
+L ++ + ++ G G+LL++
Sbjct: 210 FHLNAIASTGDGV-YIAGEQGLLLKW 234
>gi|418531432|ref|ZP_13097346.1| glycosyl hydrolase, BNR repeat protein [Comamonas testosteroni ATCC
11996]
gi|371451386|gb|EHN64424.1| glycosyl hydrolase, BNR repeat protein [Comamonas testosteroni ATCC
11996]
Length = 324
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
++++ S WE V + G L+ IA +P +G + +KD G+TW +P
Sbjct: 95 RTKDGGSTWEEVAFSKENGEPLMSIARLPS--GDWISVGAFGRAITSKDNGQTWDQLPLP 152
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP 199
S E+ R S S GK IVG+ +++ + DAG+SW+ P
Sbjct: 153 SEVEDKHMNRIAS-SEDGKNWLIVGERGLVIKSDDAGQSWQVEP 195
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 19/159 (11%)
Query: 87 TTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGG 146
T G + S++ + W++ + +++ +AF PD GF +G +L TKDGG
Sbjct: 42 TAGALGEILYSDDKGAHWQQAQLKEQRQALIVSMAFAPDK-KTGFAVGHEGWILRTKDGG 100
Query: 147 KTWAPRSIPSAEEEDFNYRFNSISFKGKEGWI-VGKPAILLHTSDAGESWERIPLSSQLP 205
TW + E SI+ WI VG + + D G++W+++PL S++
Sbjct: 101 STWEEVAFSKENGEP----LMSIARLPSGDWISVGAFGRAITSKDNGQTWDQLPLPSEVE 156
Query: 206 GDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
+ + + DG WL+V GL +
Sbjct: 157 -------------DKHMNRIASSEDGKNWLIVGERGLVI 182
>gi|372271050|ref|ZP_09507098.1| hypothetical protein MstaS_08242 [Marinobacterium stanieri S30]
Length = 364
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 32/222 (14%)
Query: 92 EQPAKSEEALSAWERVYIPVDPGVV--LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW 149
E A+S++ E V +D G + LLD+ F+ D GF+ G + T+DGG W
Sbjct: 145 ENAAQSDDLQWLLEDVEFALDDGAMPTLLDLYFI--DEQRGFVAGAYGRMFATRDGGNNW 202
Query: 150 APRS--IPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
+P+ + N S S + + G+ +L+++ D GESW+ +++ P +
Sbjct: 203 VSLGDRLPNPDRMHLNSLLLSTSGRL---LVAGEAGLLVYSDDLGESWQ----TAESPYE 255
Query: 208 MAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGIL 267
+F+ R R+ +G R G S G+ + E + L
Sbjct: 256 GSFFALAER---DRLYVLGLR------------GHLFSSADGVNWQAESAGTDA----TL 296
Query: 268 DVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANL 309
+ + + + G G+++K N G T + ++ ++ AA +
Sbjct: 297 NAAVSASGKLYLLGQGGLVMKHQNNGFTPVSSQSRNSFAAGV 338
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
+LLDI VP + +G + ++L + D G+ W P A ++ +
Sbjct: 44 LLLDIVSVPGS-SRLIAVGEQGSILFSGDQGQQWQQAKAPVA------VLLTAVQMVTSQ 96
Query: 175 EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRA----VARRIQNMGWRAD 230
+GW VG ++LHT D G SW+ + LS Q D+ Q VA + +N ++D
Sbjct: 97 QGWAVGHDGVVLHTGDGGLSWQ-VQLSGQ---DLLRVQQQGLQQALDVAEQTENAA-QSD 151
Query: 231 GGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTT 290
WLL E+ E +LD+ + + + AG G + T
Sbjct: 152 DLQWLL---------------EDVEFALDDGAMPTLLDLYFIDEQRGFVAGAYGRMFATR 196
Query: 291 NGGKTWI 297
+GG W+
Sbjct: 197 DGGNNWV 203
>gi|392950996|ref|ZP_10316551.1| hypothetical protein WQQ_06230 [Hydrocarboniphaga effusa AP103]
gi|391859958|gb|EIT70486.1| hypothetical protein WQQ_06230 [Hydrocarboniphaga effusa AP103]
Length = 343
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 23/133 (17%)
Query: 165 RFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQ-PHNRAVARRIQ 223
R S++F G G VG +++ +SD G++W R + P D+A N + A +
Sbjct: 48 RLFSLTFNGSNGLAVGDGGMVMLSSDGGKNWTR----EKAPTDLALIDVASNGSRAIAVG 103
Query: 224 NMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS 283
MG L L+ G G + +G + +V V + G A+ G
Sbjct: 104 QMG------LILIRDGNGAWRKVESGTQQRLLQVDVNAHGV------------AYVTGAF 145
Query: 284 GVLLKTTNGGKTW 296
G LLK+T+GG+TW
Sbjct: 146 GTLLKSTDGGETW 158
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 40/191 (20%)
Query: 126 DLN-HG--FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV--- 179
D+N HG ++ G TLL++ DGG+TWA + A+ D +++ W+V
Sbjct: 132 DVNAHGVAYVTGAFGTLLKSTDGGETWASAAPEWAKIYDGGAGDDAVVRDEPTNWVVRVG 191
Query: 180 --------GKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNR-AVARRIQNMGWRAD 230
G+ L+ ++D G +W+ + F P ++ A+A I M R D
Sbjct: 192 DDDSVIIGGEYGQLIRSADGGGTWQTV-----------FKHPSSQGAIAPTIFTMAIRKD 240
Query: 231 GGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAG-----GSGV 285
G + + G + + +G++ + P S FG+ +++A G G V
Sbjct: 241 GVGYAAGQSGFVATTTDSGLSWQELPAPASSNLFGV---------DSFADGEVVVVGQRV 291
Query: 286 LLKTTNGGKTW 296
+++ + GKTW
Sbjct: 292 GMRSKDAGKTW 302
>gi|260063219|ref|YP_003196299.1| oxidoreductase [Robiginitalea biformata HTCC2501]
gi|88783313|gb|EAR14485.1| putative oxidoreductase [Robiginitalea biformata HTCC2501]
Length = 342
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 97/244 (39%), Gaps = 49/244 (20%)
Query: 105 ERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ----TLLETKDGGKTWAPRSI----PS 156
E V+ PGV +AF D L G +G + ++L T+DGGKTW + P+
Sbjct: 113 ELVFTESGPGVFYDSMAFWDDTL--GIAVGDAREGCLSILLTRDGGKTWERKPCGELPPA 170
Query: 157 AEEED-FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD------MA 209
E E F +I+ G W+ + H+ D G +WE + + D +A
Sbjct: 171 IEGEGAFAASNTNIALSGNHCWVATTKGRVFHSPDRGNNWEVFTTPAAVDSDSQGIFSLA 230
Query: 210 FWQP---------HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQ 260
F+ + A R M R G W V G L G + VP
Sbjct: 231 FFDEELGFAIGGDYTDAAIRTGNKMITRDGGQTWSRVADGEL-----PGYKSCVQFVP-G 284
Query: 261 SRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKG 320
S G ++ VGY ++ + + G++W RE + + + Y+++F+N+
Sbjct: 285 SGGEDLVAVGYTG------------IVYSRDQGRSW-RELSGE----SFYTIRFVNDSVA 327
Query: 321 FVLG 324
+ G
Sbjct: 328 YAGG 331
>gi|161520890|ref|YP_001584317.1| glycosyl hydrolase BNR repeat-containing glycosyl hydrolase
[Burkholderia multivorans ATCC 17616]
gi|189352927|ref|YP_001948554.1| hypothetical protein BMULJ_04161 [Burkholderia multivorans ATCC
17616]
gi|160344940|gb|ABX18025.1| glycosyl hydrolase BNR repeat-containing protein [Burkholderia
multivorans ATCC 17616]
gi|189336949|dbj|BAG46018.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
Length = 325
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP-SAEEEDFNYRFNSISFKGKEGWI 178
+ FV D HG+ +G +L T DGG+TW + + S ++ F+ F S + +G
Sbjct: 93 VTFV--DAGHGWAVGQWGVILATSDGGETWHKQRLDLSTDQPLFSVAFTSPN----DGIA 146
Query: 179 VGKPAILLHTSDAGESWERIPL 200
VG +++L T D G++WER+ L
Sbjct: 147 VGLWSLMLATHDGGKTWERVTL 168
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 133 LGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
+G +L + D G+TW RS+P A ++++F GW VG+ ++L TSD
Sbjct: 62 VGEHGLVLLSDDDGRTWRQARSVPVAAT------LSAVTFVDAGHGWAVGQWGVILATSD 115
Query: 191 AGESW--ERIPLSSQLP-GDMAFWQPHN 215
GE+W +R+ LS+ P +AF P++
Sbjct: 116 GGETWHKQRLDLSTDQPLFSVAFTSPND 143
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + VPV + + V + WA G GV+L T++GG+TW +
Sbjct: 66 GLVLLSDDDGRTWRQARSVPVAAT---LSAVTFVDAGHGWAVGQWGVILATSDGGETWHK 122
Query: 299 EKAADNIAANLYSVKFINEKKGFVLG 324
++ + L+SV F + G +G
Sbjct: 123 QRLDLSTDQPLFSVAFTSPNDGIAVG 148
>gi|182414979|ref|YP_001820045.1| BNR repeat-containing glycosyl hydrolase [Opitutus terrae PB90-1]
gi|177842193|gb|ACB76445.1| glycosyl hydrolase, BNR repeat [Opitutus terrae PB90-1]
Length = 299
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 35/192 (18%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK 172
P ++LLD A H +G ++L + D G++W S ISF
Sbjct: 21 PRILLLDAALAD---GHIVAVGESGSILRSADSGQSWITAS------SGARATLTGISFA 71
Query: 173 GKEG--WIVGKPAILLHTSDAGESWERI----PLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+ G W VG A++LHT+DAG SW + L S +A H AV
Sbjct: 72 PESGLGWAVGHDALILHTTDAGVSWAKQWQGEDLESSFLDVLAITNEHVIAVGAY----- 126
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
GL+ + GG ++ + E+ + G L + AG G L
Sbjct: 127 -----GLYQFTQDGGRTWTQRAVLDEDMHLNRISRGPTGTL----------YLAGERGTL 171
Query: 287 LKTTNGGKTWIR 298
L++ + G+TW+R
Sbjct: 172 LRSRDQGETWVR 183
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 16 PSLSSLFAPRLNRTNAQAQQPRFISTSRACS-LPSSDSSSS-SSSSSSSSSSLNRRQFVS 73
PS + APR+ +A ++ + S L S+DS S ++SS + ++L F
Sbjct: 13 PSAFAQRAPRILLLDAALADGHIVAVGESGSILRSADSGQSWITASSGARATLTGISFAP 72
Query: 74 QTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLL 133
++ L G + +A +W + + D LD+ + ++ H +
Sbjct: 73 ESG-------LGWAVGHDALILHTTDAGVSWAKQWQGEDLESSFLDVLAITNE--HVIAV 123
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG--WIVGKPAILLHTSDA 191
G T+DGG+TW R++ D + N IS +G G ++ G+ LL + D
Sbjct: 124 GAYGLYQFTQDGGRTWTQRAV-----LDEDMHLNRIS-RGPTGTLYLAGERGTLLRSRDQ 177
Query: 192 GESWERI 198
GE+W RI
Sbjct: 178 GETWVRI 184
>gi|385333763|ref|YP_005887714.1| glycosyl hydrolase family protein [Marinobacter adhaerens HP15]
gi|311696913|gb|ADP99786.1| glycosyl hydrolase, BNR repeat protein [Marinobacter adhaerens
HP15]
Length = 330
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
++ ++ F+ +D G +L + DGG W E F S+ +E
Sbjct: 173 IINNLQFINED--QAIATGEYGMVLRSDDGGFNWDYAGYLPDEFYAHTSYFRSM----EE 226
Query: 176 GWIVGKPAILLHTSDAGESWERIPLSSQ------LPGDMAFWQPHNRAVARRIQNMGWR 228
GW+ G + HT+D GESWE++P + +PG + + A ++Q W+
Sbjct: 227 GWVGGLNGFIYHTTDGGESWEQMPTETNAPVFGFIPGSPELYAVADNATVLQLQGPAWK 285
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 31/159 (19%)
Query: 178 IVGKPAILLHTSDAGESWERIPLSSQ---LPGDMAFWQPHNRAVARRIQNMGWRAD--GG 232
+ G +LL + D GE+W+R L+S L D+ P N + N W+ + G
Sbjct: 64 VTGNDGVLLTSRDNGETWKRQALNSTASFLALDVC---PDNSFIGLTFDNQVWQGNVQGS 120
Query: 233 LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
LW +P Q + +L V WAAG + +++
Sbjct: 121 LWTP------------------HPLPSQEQ---MLTVACAPDGSWWAAGSFTTIQYSSDL 159
Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G+ W ++ N +++FINE + G G++L+
Sbjct: 160 GQNWDETSLYEDAIIN--NLQFINEDQAIATGEYGMVLR 196
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 71/193 (36%), Gaps = 27/193 (13%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+R + + LD+ PD+ G + + + G W P +PS E+
Sbjct: 81 WKRQALNSTASFLALDVC--PDNSFIGLTFDNQ--VWQGNVQGSLWTPHPLPSQEQ---- 132
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQ 223
W G + ++SD G++W+ L + + ++A+A
Sbjct: 133 -MLTVACAPDGSWWAAGSFTTIQYSSDLGQNWDETSLYEDAIINNLQFINEDQAIATGEY 191
Query: 224 NMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS 283
M R+D G G + +EF +RS +E W G +
Sbjct: 192 GMVLRSDDG--------GFNWDYAGYLPDEFYAHTSY----------FRSMEEGWVGGLN 233
Query: 284 GVLLKTTNGGKTW 296
G + TT+GG++W
Sbjct: 234 GFIYHTTDGGESW 246
>gi|383783416|ref|YP_005467982.1| glycosyl hydrolase, BNR repeat [Leptospirillum ferrooxidans C2-3]
gi|383082325|dbj|BAM05852.1| putative glycosyl hydrolase, BNR repeat [Leptospirillum
ferrooxidans C2-3]
Length = 340
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
K+ + W RV +PV L I+F PD L HGF+ G + +L T DGG +W +P
Sbjct: 123 KTVDGGDHWTRVSVPVK-DFFLQSISF-PDPL-HGFISGEKGIVLATSDGGASWKRLVVP 179
Query: 156 SAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPLSSQ 203
+ + I+F + G++ G L T+D G ++ + ++S+
Sbjct: 180 TVQN------LYGIAFLTPQHGYVAGWHRTFLETTDGGTTFHPLEMASE 222
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 102 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED 161
++W+R+ +P L IAF+ HG++ G +T LET DGG T+ P + S
Sbjct: 171 ASWKRLVVPTVQN--LYGIAFLTP--QHGYVAGWHRTFLETTDGGTTFHPLEMASERVTR 226
Query: 162 FNYRFNSISFKGKEGWIVGKPAILLHTSDAGES 194
FN +S GK + G ++ ++ D S
Sbjct: 227 QEPSFNVLSTDGKRVLLAGDHGLVYYSPDGNSS 259
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 29/208 (13%)
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHT 188
H ++G + ++ ++ DGG +W R P + + F+S GWI G +LL T
Sbjct: 70 HFVVVGDQSSIWKSDDGGVSWK-RIAPPLMGDFYGIAFSS----ALVGWISGDDGVLLKT 124
Query: 189 SDAGESWER--IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK 246
D G+ W R +P+ ++F P + ++ + G+ L GG +
Sbjct: 125 VDGGDHWTRVSVPVKDFFLQSISFPDPLHGFIS---------GEKGIVLATSDGGASWKR 175
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR-EKAADNI 305
VP +GI + + + AG L+TT+GG T+ E A++ +
Sbjct: 176 --------LVVPTVQNLYGI---AFLTPQHGYVAGWHRTFLETTDGGTTFHPLEMASERV 224
Query: 306 AANLYSVKFIN-EKKGFVLGNDGVLLQY 332
S ++ + K +L D L+ Y
Sbjct: 225 TRQEPSFNVLSTDGKRVLLAGDHGLVYY 252
>gi|72384195|ref|YP_293549.1| BNR repeat-containing glycosyl hydrolase [Ralstonia eutropha
JMP134]
gi|72123538|gb|AAZ65692.1| Glycosyl hydrolase, BNR repeat protein [Ralstonia eutropha JMP134]
Length = 323
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
+PV L ++F D HG+++G +L T+DGG+TW + + +A ++ F+
Sbjct: 81 VPVS--ATLSAVSFADD--KHGWVVGQWGVILATRDGGETWEKQRMDTAADQPL---FSV 133
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERIPL 200
+ ++G VG +++L T D G++W + L
Sbjct: 134 LFTNDRDGLAVGLWSLMLQTHDGGKTWTKTTL 165
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + VPV + + V + W G GV+L T +GG+TW +
Sbjct: 63 GIILLSDDEGKTYRQARSVPVSAT---LSAVSFADDKHGWVVGQWGVILATRDGGETWEK 119
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++ L+SV F N++ G +G ++LQ
Sbjct: 120 QRMDTAADQPLFSVLFTNDRDGLAVGLWSLMLQ 152
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 133 LGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
+G +L + D GKT+ RS+P + +++SF K GW+VG+ ++L T D
Sbjct: 59 VGEHGIILLSDDEGKTYRQARSVP------VSATLSAVSFADDKHGWVVGQWGVILATRD 112
Query: 191 AGESWER 197
GE+WE+
Sbjct: 113 GGETWEK 119
>gi|398866560|ref|ZP_10622048.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM78]
gi|398240265|gb|EJN25951.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM78]
Length = 338
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 47/202 (23%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D G +WA PS+ + Y N++ +GW VG ++LH++D G
Sbjct: 58 VGLRGVILYSDDQGTSWAQAESPSSVDLTSVYFVNAL-----QGWAVGHQGLVLHSTDGG 112
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
+W R QL + RI G L++ +
Sbjct: 113 RTWLR-----QLD-------------SLRI------------------GALLNQHS--NR 134
Query: 253 EFEEVPVQ-SRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKA-ADNIAA-NL 309
E +VP + S F +LDV + + G ++ T +GG+ W A DN +L
Sbjct: 135 EAGQVPTEGSTDFPLLDVWFEDALHGFVIGAFNLVFYTEDGGQNWSPWSAHMDNPQGLHL 194
Query: 310 YSVKFINEKKGFVLGNDGVLLQ 331
Y+++ + FV G G+LL+
Sbjct: 195 YAIRPAGDTL-FVAGEQGLLLR 215
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F +D HGF++G + T+DGG+ W+P S + + +I G
Sbjct: 149 LLDVWF--EDALHGFVIGAFNLVFYTEDGGQNWSPWSAHMDNPQGLH--LYAIRPAGDTL 204
Query: 177 WIVGKPAILLHTSDAGESWERIP-----------------LSSQLPGDM-------AFWQ 212
++ G+ +LL + + +E +P L+ L G+ WQ
Sbjct: 205 FVAGEQGLLLRLNRKKQRFEALPTPYNGSYFNLIGTPQLILAIGLRGNAYRSTDKGQTWQ 264
Query: 213 PHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG--FGILDVG 270
N +A + + RADG + L+ G + +S + F+ + V+ FG+ D+G
Sbjct: 265 KVNTGLAASLASGTVRADGSIALVSLAGDVLVSDDQ--AQSFKRLKVERSAPFFGVADMG 322
>gi|385810889|ref|YP_005847285.1| hypothetical protein IALB_2314 [Ignavibacterium album JCM 16511]
gi|383802937|gb|AFH50017.1| Hypothetical protein IALB_2314 [Ignavibacterium album JCM 16511]
Length = 795
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 51/231 (22%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA------PRSIPSAEEEDFN 163
P+ G L +AF+ N+GF +G TLL+T +GG W P+++
Sbjct: 29 PLPQGNQLNSVAFIGQ--NNGFAVGNYGTLLKTTNGGSNWEFLQPFRPKNL--------- 77
Query: 164 YRFNSISF-KGKEGWIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVAR 220
NS+ F G+ VG +++ T++ G SW + + + L D+ F
Sbjct: 78 ---NSLFFVNANVGYAVGDSGLIVKTTNGGNSWISQNTGIDTTLT-DIYFLN-------- 125
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
+N G+ G W LV L + G G++ + + ILD + A+
Sbjct: 126 --ENFGFAV--GYWGLV----LKTTNG-GLSWSSQSFYYNNNRVLILD-----SNNAFIP 171
Query: 281 GGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G + +TTNGG W + NI L VKFI+ + G+ +G G L Q
Sbjct: 172 HDFG-MFRTTNGGVNWFSVNLSQNIT--LRDVKFISNQVGYAVG--GYLTQ 217
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 33/210 (15%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D N+ +G+ + +T DGG+TW S +A + +R +S G+ VG +
Sbjct: 373 DNNNALAVGSFGFIHKTTDGGETWNSFSGLNANDL---WRLKFVS--DTIGFAVGSWGTI 427
Query: 186 LHTSDAGESWERIPL---SSQLPGDMAFWQPHNRAVARRIQNMGWRA-DGGLWLLVRGGG 241
+ T+++G SW +S L D F QN G+ GG L GG
Sbjct: 428 IKTTNSGISWNFSNSGISNSILLFDCDF----------NDQNTGFICGSGGTILKTSDGG 477
Query: 242 L-FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREK 300
L +++ +G T + G+ A G + ++L+TTNGG +W
Sbjct: 478 LNWVNLNSGTTTWLRGIDFWDDNLGL------------AVGDNYLILRTTNGGVSW-DSL 524
Query: 301 AADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+A +A N SVKF+ + ++G++G +L
Sbjct: 525 SAIQLAYNYNSVKFVTPQYAIIVGDEGKIL 554
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 37/200 (18%)
Query: 109 IPVDPGVVLLDIAFVPDDLNH---GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYR 165
+ + + L D+ F+ + + + G+L T+ +++T DGG + + +
Sbjct: 189 VNLSQNITLRDVKFISNQVGYAVGGYL--TQGHIIKTTDGGNN------WTNIMNNNQWG 240
Query: 166 FNSISFK-GKEGWIVGKPAILLHTSDAGESWERIPLSSQ---LPGDMAFWQPHNRAVARR 221
F + FK G+ G LL T+D G +W I + L G F+ N +
Sbjct: 241 FTGLFFKDSSTGFATGYSGTLLKTTDGGNNWTNISFDTYNDLLKG--TFFDSVNGIIV-- 296
Query: 222 IQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAG 281
GG GG +K T T++F + + + A G
Sbjct: 297 -------GSGGAIYKTTNGGDSWNKVTYGTDQF-----------LFSSYFLNNSFGMATG 338
Query: 282 GSGVLLKTTNGGKTWIREKA 301
G GV+LKTTNGG W+ +
Sbjct: 339 GQGVILKTTNGGINWVEKNV 358
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 36/241 (14%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI- 154
K+ +W +V D L F+ + G G + +L+T +GG W +++
Sbjct: 304 KTTNGGDSWNKVTYGTDQ--FLFSSYFLNNSF--GMATGGQGVILKTTNGGINWVEKNVN 359
Query: 155 ----PSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAF 210
PS + F VG + T+D GE+W S D+
Sbjct: 360 LISNPSITDIHI--------FDNNNALAVGSFGFIHKTTDGGETWN--SFSGLNANDL-- 407
Query: 211 WQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVG 270
W+ + V+ I G+ G W G + + +GI+ F + S + D
Sbjct: 408 WRL--KFVSDTI---GFAV--GSW-----GTIIKTTNSGISWNFSNSGI-SNSILLFDCD 454
Query: 271 YRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+ Q+ + G G +LKT++GG W+ + L + F ++ G +G++ ++L
Sbjct: 455 FNDQNTGFICGSGGTILKTSDGGLNWVNLNSG--TTTWLRGIDFWDDNLGLAVGDNYLIL 512
Query: 331 Q 331
+
Sbjct: 513 R 513
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 95/238 (39%), Gaps = 32/238 (13%)
Query: 95 AKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI 154
K+ ++W +D L DI F+ + N GF +G +L+T +GG +W+ +S
Sbjct: 98 VKTTNGGNSWISQNTGIDT--TLTDIYFLNE--NFGFAVGYWGLVLKTTNGGLSWSSQS- 152
Query: 155 PSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLP-GDMAFWQP 213
F Y N + + + T++ G +W + LS + D+ F
Sbjct: 153 -------FYYNNNRVLILDSNNAFIPHDFGMFRTTNGGVNWFSVNLSQNITLRDVKF--- 202
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
I N A GG L +G + + G G Q +G + ++
Sbjct: 203 --------ISNQVGYAVGG--YLTQGHIIKTTDG-GNNWTNIMNNNQ---WGFTGLFFKD 248
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+A G SG LLKTT+GG W + + +L F + G ++G+ G + +
Sbjct: 249 SSTGFATGYSGTLLKTTDGGNNW--TNISFDTYNDLLKGTFFDSVNGIIVGSGGAIYK 304
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 17/144 (11%)
Query: 56 SSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGV 115
+S S +++ L R +FVS T ++ G + K+ + +W + +
Sbjct: 397 NSFSGLNANDLWRLKFVSDTIGFAV--------GSWGTIIKTTNSGISWNFSNSGISNSI 448
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
+L D F +D N GF+ G+ T+L+T DGG W + + I F
Sbjct: 449 LLFDCDF--NDQNTGFICGSGGTILKTSDGGLNWVNLNSGTTT------WLRGIDFWDDN 500
Query: 175 EGWIVGKPAILLHTSDAGESWERI 198
G VG ++L T++ G SW+ +
Sbjct: 501 LGLAVGDNYLILRTTNGGVSWDSL 524
>gi|187926503|ref|YP_001892848.1| glycosyl hydrolase [Ralstonia pickettii 12J]
gi|241665991|ref|YP_002984350.1| BNR repeat-containing glycosyl hydrolase [Ralstonia pickettii 12D]
gi|187728257|gb|ACD29421.1| glycosyl hydrolase, BNR repeat [Ralstonia pickettii 12J]
gi|240868018|gb|ACS65678.1| BNR repeat-containing glycosyl hydrolase [Ralstonia pickettii 12D]
Length = 323
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
V + + WA G GV+L T++GG+TW +++ + L+SV F N++ G +G +
Sbjct: 90 VSFADERHGWAVGQWGVILATSDGGETWQKQRMDTAVDQPLFSVLFTNDRDGIAIGLWSL 149
Query: 329 LLQ 331
+LQ
Sbjct: 150 MLQ 152
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 22/208 (10%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D HG+ +G +L T DGG+TW + + +A ++ F+ + ++G +G +++
Sbjct: 94 DERHGWAVGQWGVILATSDGGETWQKQRMDTAVDQPL---FSVLFTNDRDGIAIGLWSLM 150
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS 245
L T D G++W + L P R + ++ G ++ G + S
Sbjct: 151 LQTHDGGKTWTKTTLPK---------PPGGGRADRNLYHVFADGKGAFYISAEQGTVLKS 201
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-SGVLLKTTNGGKTWIREKAADN 304
G T ++ + + G G L G D GG G L ++++GG W KA
Sbjct: 202 TDGGATWDY----LATGGKGSLWSGVAMPDGRIVVGGLLGSLFQSSDGGANWQPLKAETK 257
Query: 305 IAANLYSVKFINEKKGFV-LGNDGVLLQ 331
+ + GFV +G DG++L+
Sbjct: 258 SSIT----GLVASGNGFVAVGLDGLVLK 281
>gi|386012215|ref|YP_005930492.1| hypothetical protein PPUBIRD1_2664 [Pseudomonas putida BIRD-1]
gi|313498921|gb|ADR60287.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
Length = 336
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 153 SIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER--IPLSSQLPGDMAF 210
++PSA R ++ G+ VG +L++ D G W++ +P+S+ L
Sbjct: 34 AMPSALASSSALR--DVTLAGQRLVAVGPRGHILYSDDHGAHWQQAQVPVSADL------ 85
Query: 211 WQPHNRAVARRIQNMGWRA-DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
AV+ +GW G+ L R GG+ K E++P +LDV
Sbjct: 86 -----NAVSFATPELGWAVGHDGVVLHSRDGGMHWQKQLDGRVLAEQLPGAGTDNALLDV 140
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANLYSVKFINEKKGFVLGNDG 327
+ +A G +LL+TT+GGK W + + + +L S+ + ++ F+ G G
Sbjct: 141 WFGDARTGYAVGVFNLLLRTTDGGKHWQPWLDHSDNPQGLHLTSLAAVGDEL-FITGEQG 199
Query: 328 VLLQYLG 334
+LL++ G
Sbjct: 200 LLLKWDG 206
>gi|410583231|ref|ZP_11320337.1| glycosyl hydrolase family 33/family 58 [Thermaerobacter
subterraneus DSM 13965]
gi|410506051|gb|EKP95560.1| glycosyl hydrolase family 33/family 58 [Thermaerobacter
subterraneus DSM 13965]
Length = 338
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 23/109 (21%)
Query: 102 SAWERVYIPVDPGVV-LLD--IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAE 158
++W +V P PG V L+D +A+ DD R L T DGG W P++ P
Sbjct: 126 ASWTKVQTPFSPGFVDLVDEGVAWATDD---------RFRLYHTTDGGNRWEPKTNPCTS 176
Query: 159 EEDFNYRFNSISF-KGKEGWIV--------GKPAILLHTSDAGESWERI 198
E N + SF +GW + G+ +LL T+DA +WERI
Sbjct: 177 VE--NPAAWAASFISSHDGWFICGSDEGMGGETKVLLRTADAARTWERI 223
>gi|372271162|ref|ZP_09507210.1| glycosyl hydrolase [Marinobacterium stanieri S30]
Length = 314
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS-IPSAEEEDFNYRFNSISFKGK 174
+L I F+ D + G ++ T DGG+ W P IP+ ++ + F+ +
Sbjct: 165 MLTSIQFL--DQQTAYATGEFGLVVRTDDGGQNWQPLDYIPN------DFYPQAAHFRSR 216
Query: 175 E-GWIVGKPAILLHTSDAGESW--ERIPLSSQLPG 206
E GW+VG ++L T D G+SW ER P+++ L G
Sbjct: 217 EQGWVVGLDGMILQTRDGGQSWQTERTPVAAPLYG 251
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 271 YRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+RS+++ W G G++L+T +GG++W E+ +AA LY + + F LG +G +L
Sbjct: 213 FRSREQGWVVGLDGMILQTRDGGQSWQTERTP--VAAPLYGIADTSAGL-FALGENGTVL 269
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 24/154 (15%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE- 175
LLD PD + +G+ TL+ ++DGG W S+ + + SI F ++
Sbjct: 125 LLDATCAPD--GSYWAVGSFSTLMVSRDGGANWGETSL------NEDAMLTSIQFLDQQT 176
Query: 176 GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
+ G+ +++ T D G++W+ PL +P D H R+ R G W+
Sbjct: 177 AYATGEFGLVVRTDDGGQNWQ--PLDY-IPNDFYPQAAHFRS----------REQG--WV 221
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
+ G + ++ G + + E PV + +GI D
Sbjct: 222 VGLDGMILQTRDGGQSWQTERTPVAAPLYGIADT 255
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLY--SVKFINEKKGFVLGND 326
+ + Q A+A G G++++T +GG+ W + D I + Y + F + ++G+V+G D
Sbjct: 169 IQFLDQQTAYATGEFGLVVRTDDGGQNW---QPLDYIPNDFYPQAAHFRSREQGWVVGLD 225
Query: 327 GVLLQ 331
G++LQ
Sbjct: 226 GMILQ 230
>gi|436835360|ref|YP_007320576.1| hypothetical protein FAES_1974 [Fibrella aestuarina BUZ 2]
gi|384066773|emb|CCG99983.1| hypothetical protein FAES_1974 [Fibrella aestuarina BUZ 2]
Length = 380
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 116/283 (40%), Gaps = 50/283 (17%)
Query: 30 NAQAQQPRFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTG 89
NAQ ++P++ S R D SS S + SS+ + ++ TL + L G
Sbjct: 4 NAQTREPQYPSYRR------DDKSSQMSKTLSSTRYPQTKPMYARYLTLLAGLFLTLN-G 56
Query: 90 LYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW 149
+ +S + + + +P ++ GT+ T + T DGG+TW
Sbjct: 57 FAQWQPQSVGTTAHFRSISVP---------------SATVAWIGGTKGTFVRTIDGGRTW 101
Query: 150 APRSIPSAEEEDFNYRFNSISFKGKEGWIVGK------PAILLHTSDAGESWERIPLSSQ 203
++P+A+ DF + +F G+ +++ A + T+D G++W I ++
Sbjct: 102 QAGNVPNADACDFR---DVKAFDGQTAFLMSAGPAEKGQARIYKTTDGGQTWT-IQYQTE 157
Query: 204 LPG----DMAFW-QPHNRAVARRIQNMGWRADGGLWLLVR---GGGLFLSKGTGITEEFE 255
PG M FW + H AV+ ++ G W +V+ GG + E
Sbjct: 158 QPGVFFDSMDFWDRQHGMAVSDPVE--------GRWFIVKTDDGGRTWQRIPAAALPPME 209
Query: 256 --EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
E + G ++ G + G +G + ++T+ G+TW
Sbjct: 210 PNEAAFAASGTNLIVQGSQHVWLVSGGGPAGRVFRSTDRGRTW 252
>gi|372273123|ref|ZP_09509171.1| hypothetical protein MstaS_18667 [Marinobacterium stanieri S30]
Length = 352
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
L DIA D+L H ++G +L T+DGG +W P ++ N + + G E
Sbjct: 89 LQDIA-AWDEL-HAVVVGNDGVVLRTEDGGSSWQRVEAPVSDV--VNKLMDVKVYPGGEA 144
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
W VG ++L ++D G SW+++ R I N R + +
Sbjct: 145 WAVGAFGMILRSTDYGRSWQQM-----------------REAEDFILNEVVRVSLDVLVA 187
Query: 237 V-RGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
V G + S G + +F + ++ ++ V +R + A G G++L T + G++
Sbjct: 188 VGEFGTVLRSDNGGRSWQFADTGAEN---SLMSVAFRDERNGLAVGLEGIILATRDAGRS 244
Query: 296 WIREKAADNIAA 307
W+ A D++ A
Sbjct: 245 WV--AAMDDLQA 254
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 90/234 (38%), Gaps = 66/234 (28%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAILLHTSDAGESW-- 195
++ K GKT P +I S + RF ++ + W VG ++ + D GE W
Sbjct: 27 FVKPKPVGKTVTPAAIESRD------RFYGVAVIDDRVIWAVGADGKVIISRDQGEIWDV 80
Query: 196 ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFE 255
+ P+S L D+A W + V + G + ++ G + +
Sbjct: 81 QTTPVSLHLQ-DIAAWDELHAVV-----------------VGNDGVVLRTEDGGSSWQRV 122
Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAAN------- 308
E PV ++DV EAWA G G++L++T+ G++W + + A++ N
Sbjct: 123 EAPVSDVVNKLMDVKVYPGGEAWAVGAFGMILRSTDYGRSWQQMREAEDFILNEVVRVSL 182
Query: 309 --------------------------------LYSVKFINEKKGFVLGNDGVLL 330
L SV F +E+ G +G +G++L
Sbjct: 183 DVLVAVGEFGTVLRSDNGGRSWQFADTGAENSLMSVAFRDERNGLAVGLEGIIL 236
>gi|410621456|ref|ZP_11332303.1| BNR repeat protein [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410158971|dbj|GAC27677.1| BNR repeat protein [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 347
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 22/210 (10%)
Query: 133 LGTRQTLLETKDGGKTWAPR-SIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDA 191
+G ++L + D G+TW + S+P + + F G VG + T D
Sbjct: 87 VGHDASILHSSDAGQTWQLQLSMPELDRPFLDVFF----MDENTGVAVGAYGLFYRTIDG 142
Query: 192 GESWERIPLSSQLPGDMA-----------FWQPHNRAVARRIQNMGWRADGGLWLLVRGG 240
G +W++ +S LP D F+Q + + + A+G L++ G
Sbjct: 143 GTTWQKELHASVLPQDDIDYLDSIKDEPEFYQDELSFILPHFNRLSY-ANGKLYMAGEAG 201
Query: 241 GLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREK 300
L +S G ++ + G D+ + +A G G + + K W +K
Sbjct: 202 LLAVSTDFG--RSWKRFDIAYNG-SFFDIQETKNGQLFAVGLRGNIFLANDDSKKW--DK 256
Query: 301 AADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+ +L S+ N+K ++ GN+GVLL
Sbjct: 257 LQTCVTTSLNSIVLGNDKNIYITGNNGVLL 286
>gi|148547883|ref|YP_001267985.1| hypothetical protein Pput_2667 [Pseudomonas putida F1]
gi|148511941|gb|ABQ78801.1| hypothetical protein Pput_2667 [Pseudomonas putida F1]
Length = 331
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 153 SIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER--IPLSSQLPGDMAF 210
++PSA R ++ G+ VG +L++ D G W++ +P+S+ L
Sbjct: 34 AMPSALASSSALR--DVTLAGQRLVAVGPRGHILYSDDHGGHWQQAQVPVSADL------ 85
Query: 211 WQPHNRAVARRIQNMGWR-ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
AV+ +GW G+ L R GG+ K E++P +LDV
Sbjct: 86 -----NAVSFATPELGWAVGHDGVVLHSRDGGMHWQKQLDGRVLAEQLPGADTDNALLDV 140
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANLYSVKFINEKKGFVLGNDG 327
+ +A G +LL+TT+GGK W + + + +L S+ + ++ F+ G G
Sbjct: 141 WFGDARTGYAVGVFNLLLRTTDGGKHWQPWLDHSDNPQGLHLTSLAAVGDEL-FITGEQG 199
Query: 328 VLLQYLG 334
+LL++ G
Sbjct: 200 LLLKWDG 206
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 63/173 (36%), Gaps = 38/173 (21%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP-------------RSIPSAEEEDF- 162
LLD+ F D G+ +G LL T DGGK W P S+ + +E F
Sbjct: 137 LLDVWF--GDARTGYAVGVFNLLLRTTDGGKHWQPWLDHSDNPQGLHLTSLAAVGDELFI 194
Query: 163 -----------NYRFNSIS--FKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMA 209
RF + + G VGKP +LL G ++ Q
Sbjct: 195 TGEQGLLLKWDGKRFARVGTPYAGTLFGAVGKPGVLLIYGLRGHAYRSTDGGQQ------ 248
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSR 262
WQ + + + G DG WL + G L LS+ G + F VP R
Sbjct: 249 -WQLIDTGINASLTAAGIDRDGQFWLASQAGDLLLSRDDGAS--FSPVPHSPR 298
>gi|388548068|ref|ZP_10151324.1| BNR/Asp-box repeat-containing protein [Pseudomonas sp. M47T1]
gi|388273883|gb|EIK93489.1| BNR/Asp-box repeat-containing protein [Pseudomonas sp. M47T1]
Length = 316
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR 152
Q + +A + W R + LL + F+ D HGF +G +L T+DGG+ W +
Sbjct: 87 QILATVDAGATWTRQFQDPARQAPLLSVHFL--DAEHGFAVGAYGAVLSTEDGGQHW--Q 142
Query: 153 SIPSAEEEDFNYRFNS-ISFKGKEGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMA 209
+ + N+ I+ K IVG+ ++ ++DAG +W+R+ P L G +A
Sbjct: 143 DVSQRLDNPDQLHLNAIIAVKDAGLLIVGEQGVIFRSADAGLTWQRVQGPYEGSLFGAVA 202
Query: 210 FWQ 212
Q
Sbjct: 203 TAQ 205
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +L + D G+TWA +PS + Y ++ + GW VG +L T DAG
Sbjct: 41 VGERGHVLLSDDQGRTWAQAPVPSQQLLTAVYFVDA-----RHGWAVGHDTQILATVDAG 95
Query: 193 ESWER 197
+W R
Sbjct: 96 ATWTR 100
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 19/157 (12%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR-SIPSAEEEDFNYRFNS 168
PV +L + FV D HG+ +G +L T D G TW + P+ + + F
Sbjct: 61 PVPSQQLLTAVYFV--DARHGWAVGHDTQILATVDAGATWTRQFQDPARQAPLLSVHF-- 116
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR 228
+ G+ VG +L T D G+ W+ + P + N +A +
Sbjct: 117 --LDAEHGFAVGAYGAVLSTEDGGQHWQDVSQRLDNPDQLHL----NAIIAVK------- 163
Query: 229 ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFG 265
D GL ++ G +F S G+T + + P + FG
Sbjct: 164 -DAGLLIVGEQGVIFRSADAGLTWQRVQGPYEGSLFG 199
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 240 GGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIRE 299
G + LS G T VP Q + V R WA G +L T + G TW R+
Sbjct: 45 GHVLLSDDQGRTWAQAPVPSQQLLTAVYFVDAR---HGWAVGHDTQILATVDAGATWTRQ 101
Query: 300 KAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
A L SV F++ + GF +G G +L
Sbjct: 102 FQDPARQAPLLSVHFLDAEHGFAVGAYGAVL 132
>gi|397694975|ref|YP_006532856.1| hypothetical protein T1E_2216 [Pseudomonas putida DOT-T1E]
gi|397331705|gb|AFO48064.1| hypothetical protein T1E_2216 [Pseudomonas putida DOT-T1E]
Length = 331
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 153 SIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER--IPLSSQLPGDMAF 210
++PSA R ++ G+ VG +L++ D G W++ +P+S+ L
Sbjct: 34 AMPSALASSSALR--DVTLAGQRLVAVGPRGHILYSDDHGGHWQQAQVPVSADL------ 85
Query: 211 WQPHNRAVARRIQNMGWR-ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
AV+ +GW G+ L R GG+ K E++P +LDV
Sbjct: 86 -----NAVSFATPELGWAVGHDGVVLHSRDGGMHWQKQLDGRVLAEQLPGADTDNALLDV 140
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANLYSVKFINEKKGFVLGNDG 327
+ +A G +LL+TT+GGK W + + + +L S+ + ++ F+ G G
Sbjct: 141 WFGDARTGYAVGVFNLLLRTTDGGKHWQPWLDHSDNPQGLHLTSLAAVGDEL-FITGEQG 199
Query: 328 VLLQYLG 334
+LL++ G
Sbjct: 200 LLLKWDG 206
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 63/173 (36%), Gaps = 38/173 (21%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP-------------RSIPSAEEEDF- 162
LLD+ F D G+ +G LL T DGGK W P S+ + +E F
Sbjct: 137 LLDVWF--GDARTGYAVGVFNLLLRTTDGGKHWQPWLDHSDNPQGLHLTSLAAVGDELFI 194
Query: 163 -----------NYRFNSIS--FKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMA 209
RF + + G VGKP +LL G ++ Q
Sbjct: 195 TGEQGLLLKWDGKRFARVGTPYAGTLFGAVGKPGVLLIYGLRGHAYRSTDGGQQ------ 248
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSR 262
WQ + + + G DG WL + G L LS+ G + F VP R
Sbjct: 249 -WQLIDTGINASLTAAGIDRDGQFWLASQAGDLLLSRDDGAS--FSPVPHSPR 298
>gi|206563471|ref|YP_002234234.1| BNR/Asp-box repeat protein [Burkholderia cenocepacia J2315]
gi|444357243|ref|ZP_21158791.1| BNR/Asp-box repeat protein [Burkholderia cenocepacia BC7]
gi|444369359|ref|ZP_21169117.1| BNR/Asp-box repeat protein [Burkholderia cenocepacia K56-2Valvano]
gi|198039511|emb|CAR55478.1| BNR/Asp-box repeat protein [Burkholderia cenocepacia J2315]
gi|443599285|gb|ELT67580.1| BNR/Asp-box repeat protein [Burkholderia cenocepacia K56-2Valvano]
gi|443606543|gb|ELT74319.1| BNR/Asp-box repeat protein [Burkholderia cenocepacia BC7]
Length = 320
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 121/302 (40%), Gaps = 46/302 (15%)
Query: 1 MGSSLRLSEPMMLVKPSLSSLFAPRLNRTN-AQAQQPRFISTS-RACSLPSSDSSSS--- 55
+G++L P L ++++ A RL A+A R ++ R L S D+ +
Sbjct: 15 LGAALFAFSPRPLPAFPVTAIHADRLQINGLARAGTTRIVAVGERGVILLSDDAGAHWRP 74
Query: 56 SSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGV 115
++ + +S+L + +F++ T L G + +S++A W V+I D
Sbjct: 75 AAIAHDPASTLTQVRFITPT--------LGIAVGHDGRIVRSDDAGMHWREVHIDHDHSD 126
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
LL I D + F G+ LL + D G W P+ + N+I G+
Sbjct: 127 PLLSIWGTAD--SPLFAAGSFGQLLRSDDAGVNWRTVKTPAGDRH-----LNAIVGDGRG 179
Query: 176 GWIV-GKPAILLHTSDAGESWERIP------LSSQL---PGDMAFWQPHNRAVARRIQNM 225
+V G+ LL ++D G +W++ P L L GD + V
Sbjct: 180 NLLVAGESGTLLRSADNGVTWDKPPSPYAGSLFGALMLANGDWVAYGMRGNVVRSTDHGA 239
Query: 226 GWR----------------ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
W ADG L L+ +GG + +SK G+T + ++ +LD+
Sbjct: 240 SWTHVDSHVPVSYFGATQLADGELVLVGQGGAIVVSKDGGLTFDVRKLGGVQSLAAVLDM 299
Query: 270 GY 271
G+
Sbjct: 300 GH 301
>gi|340616102|ref|YP_004734555.1| BNR repeat-containing protein [Zobellia galactanivorans]
gi|339730899|emb|CAZ94163.1| BNR repeats protein [Zobellia galactanivorans]
Length = 342
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 29/158 (18%)
Query: 158 EEEDFNYRFNSISF-KGKEGWIVGKPA----ILLHTSDAGESWERIPLSSQLP----GDM 208
+EED N ++++SF KEG +G +L T D G +WE+IP S+LP G+
Sbjct: 118 KEEDENVFYDAMSFWNDKEGIAIGDSMNGCLSILITRDGGNTWEKIPC-SELPEGVEGEG 176
Query: 209 AFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG--FGI 266
AF A I+ +G +A W+ ++ S G T + ++ P+ S GI
Sbjct: 177 AF-----AASNTNIKVLGDKA----WVATTKSRIYFSADKGKTWQIQKTPISSEAPTQGI 227
Query: 267 LDVGYRSQDEAWAAGGSGVLLK--------TTNGGKTW 296
V + ++ A GG + T +GGKTW
Sbjct: 228 FSVDFYNEKLGMAIGGDFTRPEINKANKAITEDGGKTW 265
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 65 SLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVP 124
SL + ++ T++ +S+A LY+ K L VY D V ++F
Sbjct: 79 SLPEFRSIAHTSSDFFMLSIANPALLYKTGDKGRMQL-----VYKEEDENVFYDAMSFWN 133
Query: 125 DDLNHGFLLGTRQ----TLLETKDGGKTWAPRSIPSAE-------EEDFNYRFNSISFKG 173
D G +G ++L T+DGG TW IP +E E F +I G
Sbjct: 134 D--KEGIAIGDSMNGCLSILITRDGGNTW--EKIPCSELPEGVEGEGAFAASNTNIKVLG 189
Query: 174 KEGWIVGKPAILLHTSDAGESW--ERIPLSSQLP 205
+ W+ + + ++D G++W ++ P+SS+ P
Sbjct: 190 DKAWVATTKSRIYFSADKGKTWQIQKTPISSEAP 223
>gi|298252228|ref|ZP_06976031.1| hypothetical protein Krac_1304 [Ktedonobacter racemifer DSM 44963]
gi|297546820|gb|EFH80688.1| hypothetical protein Krac_1304 [Ktedonobacter racemifer DSM 44963]
Length = 409
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 49/239 (20%)
Query: 126 DLNHGF---LLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIV-- 179
D HG+ L Q LL T+D G+TW S + Y F I+F + GW+
Sbjct: 107 DAWHGYIGALQDQTQILLSTQDSGQTWQTTSF-TLSTPGGPYYFYQINFLDSQHGWLAFS 165
Query: 180 ------GKPAI-LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNM--GWRAD 230
G I LL TS+ G++WE + + P +A +P+ +++ N+ GW
Sbjct: 166 AQGSHPGSSVIALLRTSNGGKTWETLLNTVDNPASLA--RPYGQSIHFTFANLQQGWAT- 222
Query: 231 GGLWL-------LVRGGGLFLSKGT----------GITEEFEEVPVQSRGFGILDVGYRS 273
G+WL + GG +K + T+ + SR G L V Y +
Sbjct: 223 -GIWLSGEVYLASTQDGGKTWNKDSIAPIKGADSIYFTQSYGPFWQNSRT-GTLFVKYDT 280
Query: 274 QDEAWAAGGSGV----LLKTTNGGKTWIREKAADNI-AANLYSVKFINEKKGFVLGNDG 327
+ G+G+ +T +GGKTW+ ++ + S F N ++GF G DG
Sbjct: 281 ------SSGNGMPHLTTYQTQDGGKTWLLGPSSPSTWYTEFTSFSFPNAREGFSFGFDG 333
>gi|402570196|ref|YP_006619540.1| glycosyl hydrolase family protein [Burkholderia cepacia GG4]
gi|402251393|gb|AFQ51846.1| glycosyl hydrolase BNR repeat-containing protein [Burkholderia
cepacia GG4]
Length = 322
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D HG+ +G +L T DGG TW + + +A ++ F+ + ++G VG +++
Sbjct: 93 DAKHGWAVGQWGAILATDDGGDTWVTQRLDTAVDQPL---FSVLFTNAQDGIAVGLWSLM 149
Query: 186 LHTSDAGESWERIPL 200
L T D G +W R L
Sbjct: 150 LQTHDGGRTWTRTTL 164
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + VPV + + V + WA G G +L T +GG TW+
Sbjct: 62 GIVLLSDDDGKTWRQARRVPVSAT---LSAVWFADAKHGWAVGQWGAILATDDGGDTWVT 118
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++ + L+SV F N + G +G ++LQ
Sbjct: 119 QRLDTAVDQPLFSVLFTNAQDGIAVGLWSLMLQ 151
>gi|421504278|ref|ZP_15951220.1| glycosyl hydrolase [Pseudomonas mendocina DLHK]
gi|400344833|gb|EJO93201.1| glycosyl hydrolase [Pseudomonas mendocina DLHK]
Length = 282
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 32/165 (19%)
Query: 174 KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL 233
+ GWIVG ++LLHTSD G+SW+ QL G R +A G RA+ G
Sbjct: 14 RNGWIVGHDSVLLHTSDGGDSWQ-----IQLDG--------RRLLALLQGWYGQRAEAGD 60
Query: 234 WL---LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTT 290
+ ++R G+ ++ T T + P LDV + + + G G++L +
Sbjct: 61 AIADDMLREIGMAMT--TSATPDVMAAP-------FLDVLFDGRGHGFVVGAFGMILHSR 111
Query: 291 NGGKTWI--REKAADNIAANLYSVKFINEKKG--FVLGNDGVLLQ 331
+ G TW E ++ +LY + E++G +V G G+L++
Sbjct: 112 DAGATWEPWIEHTDNDRRMHLYG---LAERQGVFYVAGEQGLLMR 153
>gi|119470102|ref|ZP_01612868.1| putative orphan protein [Alteromonadales bacterium TW-7]
gi|119446523|gb|EAW27797.1| putative orphan protein [Alteromonadales bacterium TW-7]
Length = 331
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 47/191 (24%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDFNYRFNSISF 171
P VLL D+ N+G+ G T++ T DGG W ++ PS ++ + I F
Sbjct: 70 PTQVLLTAVDFSDE-NNGWACGHDATIINTVDGGNNWQLQQAKPSLDKPCLD-----ILF 123
Query: 172 KGK-EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQN---MGW 227
K K EG+ VG + HT+D G+ WE+ L S L + +R +++ G+
Sbjct: 124 KDKLEGFAVGAYGMFYHTTDGGKQWEKRFLDSLLFSE-------DRDYLNDLKDNDPEGY 176
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLL 287
A+ I F + S G ++ G G+L
Sbjct: 177 EAETA----------------SILPHFNRIEQTSEGLMLV-------------GEMGLLA 207
Query: 288 KTTNGGKTWIR 298
++T+ GKTW+R
Sbjct: 208 RSTDNGKTWLR 218
>gi|336311752|ref|ZP_08566712.1| BNR repeat protein [Shewanella sp. HN-41]
gi|335864699|gb|EGM69774.1| BNR repeat protein [Shewanella sp. HN-41]
Length = 337
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 25/240 (10%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W++V P V L + F+ + L G+ +G T++ T+DGG+TW + S E+ F
Sbjct: 69 WQQV--PTPTSVQLTKVFFLNEKL--GWAVGHDATIVHTQDGGQTWKLQMQSSEIEKPF- 123
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESW-----------ERIPLSSQLP-GDMAFW 211
+ + +EG +G + T D G +W E + ++L D A +
Sbjct: 124 --LDVLFLNEQEGMAIGAYGLFYRTHDGGATWTEEFHQELLAEEDVSYLAELKDSDQAAY 181
Query: 212 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGY 271
++ + DG L+ G + +S+ G++ F ++
Sbjct: 182 LTERASLLPHFNRLVALKDGRFLLVGELGLVAVSEDKGLSFTRTSFEYDGSMFNAIE--- 238
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+QD + G G + K + W + + +++ S +++ +++GN G+++Q
Sbjct: 239 -TQDAVYVMGLRGHVFKAEHSLAQWTEIEMP--VQSSINSAMAVSDNALYLVGNAGIVIQ 295
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 250 ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANL 309
+ + +++VP + + V + ++ WA G ++ T +GG+TW + + I
Sbjct: 65 LKDHWQQVPTPT-SVQLTKVFFLNEKLGWAVGHDATIVHTQDGGQTWKLQMQSSEIEKPF 123
Query: 310 YSVKFINEKKGFVLGNDGVL 329
V F+NE++G +G G+
Sbjct: 124 LDVLFLNEQEGMAIGAYGLF 143
>gi|419954237|ref|ZP_14470377.1| hypothetical protein YO5_09665 [Pseudomonas stutzeri TS44]
gi|387969041|gb|EIK53326.1| hypothetical protein YO5_09665 [Pseudomonas stutzeri TS44]
Length = 377
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 35/203 (17%)
Query: 133 LGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
+G R +L + D G++W RS+P + + F GW VG ++LH+SD
Sbjct: 67 VGERGIVLLSDDAGRSWRQARSVP------VSVALTDVHFASASHGWAVGHSGVVLHSSD 120
Query: 191 AGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
GESW R QL G A + A R A +R ++ G
Sbjct: 121 GGESWTR-----QLDGKQAALIIRDDAKRRADAGEEGAA-----AALRSAEFLVTDG--- 167
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAAN 308
+ P L V + + +A G G+ L T +GG+ W + + + +
Sbjct: 168 ----PDKP-------FLGVRFADEQRGYAVGAYGIALYTVDGGQRWQSLVGQIPNPRGKH 216
Query: 309 LYSVKFINEKKGFVLGNDGVLLQ 331
LY V+ + + G G L +
Sbjct: 217 LYQVQIAGDAL-LIAGEQGALFR 238
>gi|58616610|ref|YP_195741.1| hypothetical protein p2A397 [Aromatoleum aromaticum EbN1]
gi|56316074|emb|CAI10717.1| hypothetical protein p2A397 [Aromatoleum aromaticum EbN1]
Length = 321
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 31/176 (17%)
Query: 95 AKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI 154
A +E+ ++W++ P L D+A D H +G +L T D G++W +S+
Sbjct: 68 AVTEDGGASWQKQATPSR--AALQDVAAWDD--QHAVAVGNDGIVLITVDAGRSW--QSV 121
Query: 155 PSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPH 214
+ + E N + G W VG+ +++ ++D G SW R+ GD
Sbjct: 122 DAPKSEVANKLLRVKALPGGTAWAVGEAGMVMRSTDFGRSWTRV------GGD------- 168
Query: 215 NRAVARRIQNMGWR---ADGG-LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGI 266
+++GW A GG +WL+ G + +S G++ E PV++ G+
Sbjct: 169 --------EDVGWNDIVATGGRIWLVGEFGNVKVSGDDGVSWRAIETPVETSLMGL 216
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI 315
E PV RG G V Q +AW G +G + T +GG +W +K A A L V
Sbjct: 37 EQPVFERGEGYYGVSVLDQGKAWVVGSNGKIAVTEDGGASW--QKQATPSRAALQDVAAW 94
Query: 316 NEKKGFVLGNDGVLL 330
+++ +GNDG++L
Sbjct: 95 DDQHAVAVGNDGIVL 109
>gi|395449206|ref|YP_006389459.1| hypothetical protein YSA_10288 [Pseudomonas putida ND6]
gi|388563203|gb|AFK72344.1| hypothetical protein YSA_10288 [Pseudomonas putida ND6]
Length = 323
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 153 SIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER--IPLSSQLPGDMAF 210
++PSA R ++ G+ VG +L++ D G W++ +P+S+ L
Sbjct: 26 AMPSALASSSALR--DVTLAGQRLVAVGPRGHILYSDDHGGHWQQAQVPVSADL------ 77
Query: 211 WQPHNRAVARRIQNMGWR-ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
AV+ +GW G+ L R GG+ K E++P +LDV
Sbjct: 78 -----NAVSFATPELGWAVGHDGVVLHSRDGGMHWQKQLDGRVLAEQLPGADTDNALLDV 132
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANLYSVKFINEKKGFVLGNDG 327
+ +A G +LL+TT+GGK W + + + +L S+ + ++ F+ G G
Sbjct: 133 WFGDARTGYAVGVFNLLLRTTDGGKHWQPWLDHSDNPQGLHLTSLAAVGDEL-FITGEQG 191
Query: 328 VLLQYLG 334
+LL++ G
Sbjct: 192 LLLKWDG 198
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 63/173 (36%), Gaps = 38/173 (21%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP-------------RSIPSAEEEDF- 162
LLD+ F D G+ +G LL T DGGK W P S+ + +E F
Sbjct: 129 LLDVWF--GDARTGYAVGVFNLLLRTTDGGKHWQPWLDHSDNPQGLHLTSLAAVGDELFI 186
Query: 163 -----------NYRFNSIS--FKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMA 209
RF + + G VGKP +LL G ++ Q
Sbjct: 187 TGEQGLLLKWDGKRFARVGTPYAGTLFGAVGKPGVLLIYGLRGHAYRSTDGGQQ------ 240
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSR 262
WQ + + + G DG WL + G L LS+ G + F VP R
Sbjct: 241 -WQLIDTGINASLTAAGIDRDGQFWLASQAGDLLLSRDDGAS--FSPVPHSPR 290
>gi|409396523|ref|ZP_11247509.1| hypothetical protein C211_13821 [Pseudomonas sp. Chol1]
gi|409119004|gb|EKM95394.1| hypothetical protein C211_13821 [Pseudomonas sp. Chol1]
Length = 382
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 35/203 (17%)
Query: 133 LGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
+G R +L + D G++W RS+P + + F GW VG ++LH+SD
Sbjct: 72 VGERGIVLLSDDAGRSWRQARSVP------VSVALTDVHFASASHGWAVGHSGVVLHSSD 125
Query: 191 AGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
GESW R QL G A + A RR A L
Sbjct: 126 GGESWTR-----QLDGKQAALIIRDDA-KRRADAGEEGAAAALR---------------- 163
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAAN 308
+ EF + F L V + + +A G G+ L T +GG+ W + + + +
Sbjct: 164 SAEFLVTDGPDKPF--LGVRFADEQRGYAVGAYGIALYTVDGGQRWQSLVGQIPNPRGKH 221
Query: 309 LYSVKFINEKKGFVLGNDGVLLQ 331
LY V+ + + G G L +
Sbjct: 222 LYQVQIAGDAL-LIAGEQGALFR 243
>gi|358640140|dbj|BAL27436.1| putative glycosyl hydrolase [Azoarcus sp. KH32C]
Length = 352
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 42/208 (20%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R ++ + D GK+W +P A + ++SF ++GW VG ++LH+ DA
Sbjct: 53 VGQRGHIVYSDDQGKSWRQAKVPVASD------LVAVSFPTSQQGWAVGHDGVVLHSGDA 106
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL------LVRGGGLFLS 245
G +W + QL G RA GG+ + + GG
Sbjct: 107 GATWTK-----QLEG---------------------RALGGVLVAHYQAQAAKAGGAAAE 140
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAAD 303
E E Q+ LDV + + G ++L+T +GGKTW ++ +
Sbjct: 141 TAAKWVSEAERFAAQAAENPFLDVWFADDKTGFVVGAFNLILRTGDGGKTWQPWLDRTDN 200
Query: 304 NIAANLYSVKFINEKKGFVLGNDGVLLQ 331
A +LY ++ + FV G G++++
Sbjct: 201 PQALHLYGIRAAGGEV-FVTGEQGLVMR 227
>gi|443468119|ref|ZP_21058355.1| BNR repeat protein [Pseudomonas pseudoalcaligenes KF707]
gi|442897196|gb|ELS24184.1| BNR repeat protein [Pseudomonas pseudoalcaligenes KF707]
Length = 320
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 39/218 (17%)
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED-FNYRFNSISFKGKEGWI 178
++FV D G+ +G +L T DGG +W + + S E+ F F F ++G
Sbjct: 86 VSFVDD--KQGWAVGHWGAILSTSDGGDSWQIQRLSSEEDRPLFAVHF----FNARQGVA 139
Query: 179 VGKPAILLHTSDAGESW-----ERIPLSSQLPGDMA--FWQPHNRAVARRIQNMGWRA-- 229
VG +++L T D G +W + P SS+ ++ F H R A Q R+
Sbjct: 140 VGLWSLVLTTDDGGRTWAEQTVQAPPGSSRADLNLMGLFADGHGRLYATAEQGQVLRSED 199
Query: 230 ------------DGGLW---------LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILD 268
+G LW LLV G L GT ++F +P++S+ +
Sbjct: 200 KGKSWSYLDTGYEGTLWSGAVLADGSLLVGGQRGTLLHGTAEGKDFRRLPLESKS-SVTS 258
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
+ S + G G+++++++GG+++ + +AD ++
Sbjct: 259 IAV-SGPQVLVVGLDGLMVRSSDGGQSFQEQLSADGVS 295
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
V + + WA G G +L T++GG +W ++ + L++V F N ++G +G
Sbjct: 86 VSFVDDKQGWAVGHWGAILSTSDGGDSWQIQRLSSEEDRPLFAVHFFNARQGVAVG 141
>gi|398867224|ref|ZP_10622690.1| BNR/Asp-box repeat protein [Pseudomonas sp. GM78]
gi|398237647|gb|EJN23395.1| BNR/Asp-box repeat protein [Pseudomonas sp. GM78]
Length = 367
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 85/236 (36%), Gaps = 68/236 (28%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKE 175
L+D+ V D L ++G +L K G+ R +P + ++ F ++
Sbjct: 46 LIDVQRVGDQL---VMVGAEGHILLRKADGQVEQTR-VP------VDLLLTAVHFVDDRQ 95
Query: 176 GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
GW VG ++LH+ D G +W R QL G R+ N
Sbjct: 96 GWAVGHDGVVLHSDDGGVTWTR-----QLDG--------------RVIN----------- 125
Query: 236 LVRGGGLFLSKGTGITEEFE------EVPVQSRGFGILDVG---------------YRSQ 274
L L G E + E ++S F + D+G +R+
Sbjct: 126 -----ALMLEWAQGEVERLQAAASVDEQALESARFALDDIGAGAEAGPSRPLLDVWFRNA 180
Query: 275 DEAWAAGGSGVLLKTTNGGKTWIREKAADN-IAANLYSVKFINEKKGFVLGNDGVL 329
E W G G LL T +GG TW DN +L SV ++ V G G L
Sbjct: 181 REGWVVGAYGTLLHTADGGSTWAYVAGLDNPDRLHLNSVMGLDNGDLLVAGEGGRL 236
>gi|149925868|ref|ZP_01914132.1| hypothetical protein LMED105_06572 [Limnobacter sp. MED105]
gi|149825985|gb|EDM85193.1| hypothetical protein LMED105_06572 [Limnobacter sp. MED105]
Length = 390
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 37/239 (15%)
Query: 109 IPVDPGV-----VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
IP P V +LLD+ V ++L F G +L+++D G+TW+ +P +
Sbjct: 41 IPAIPSVNATRALLLDVERVGNNL---FSAGEFGQILKSEDNGQTWSAGKVP------VS 91
Query: 164 YRFNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSS---QLPGDMAFWQPHNRAVA 219
S++F + G+ VG ++L T D G +W+++ S Q D+A Q +
Sbjct: 92 ITLTSVAFDNEAVGYAVGHDGVVLKTEDGGANWKKLIDGSTINQFVLDIA--QEKADRLQ 149
Query: 220 RRIQNMGWRA---DGGLWLLVRGGGLF---LSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
++ N+ A D + +F L++G ++E P + +LDV
Sbjct: 150 EQLDNLPENAAPEDRERLEIAAEEAMFTLDLAQG-----DYEVGPSKP----LLDVIVNG 200
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKG--FVLGNDGVLL 330
+ AG G LLK+T+ G +W N N + + K G +V G G +L
Sbjct: 201 NGNVFVAGAYGQLLKSTDQGASWTYLGDRTNNPTNYHFNTMMLSKTGEIWVAGEQGTVL 259
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 25/218 (11%)
Query: 111 VDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS 170
V P LLD+ + + + F+ G LL++ D G +W + NY FN++
Sbjct: 187 VGPSKPLLDV--IVNGNGNVFVAGAYGQLLKSTDQGASWT--YLGDRTNNPTNYHFNTMM 242
Query: 171 F-KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA 229
K E W+ G+ +L +SD GESW + ++ D + + R + +G R
Sbjct: 243 LSKTGEIWVAGEQGTVLVSSDEGESWT----ARKIDYDGSVFALLEAPDTRTVVAVGLR- 297
Query: 230 DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKT 289
G + L GG + TG+ E F V S G ++ G G+L ++
Sbjct: 298 -GNAFRLPFGGEQWEEINTGLRETFSGATVLSDGSMVV------------VGSRGILARS 344
Query: 290 TNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDG 327
T+ +T + AD + + SV +N+++ + G G
Sbjct: 345 TDDFRTIQVARRADKLPS--ASVVQLNDQEILLAGMRG 380
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
+LDV R + ++AG G +LK+ + G+TW K ++ L SV F NE G+ +G+
Sbjct: 54 LLDV-ERVGNNLFSAGEFGQILKSEDNGQTWSAGKVP--VSITLTSVAFDNEAVGYAVGH 110
Query: 326 DGVLLQ 331
DGV+L+
Sbjct: 111 DGVVLK 116
>gi|327402439|ref|YP_004343277.1| RHS repeat-associated core domain-containing protein [Fluviicola
taffensis DSM 16823]
gi|327317947|gb|AEA42439.1| RHS repeat-associated core domain protein [Fluviicola taffensis DSM
16823]
Length = 4221
Score = 45.1 bits (105), Expect = 0.050, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 281 GGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
G G L T NGG+ W+R ++ IA++L V+ IN G +G G+LL
Sbjct: 2259 GSRGYLFSTNNGGQNWVR--VSNTIASDLKRVRMINSNSGLAVGTSGILL 2306
>gi|77458973|ref|YP_348479.1| BNR repeat-containing glycosyl hydrolase [Pseudomonas fluorescens
Pf0-1]
gi|77382976|gb|ABA74489.1| BNR domain protein [Pseudomonas fluorescens Pf0-1]
Length = 314
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 45/224 (20%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED-FNYRFNSISFKGKE 175
L ++FV D G+ +G +L T+DGG+ W + + SAE+ F F F +
Sbjct: 78 LTGVSFV--DARQGWAVGHWGAILATRDGGENWQVQRLSSAEDRPLFAVHF----FNPIQ 131
Query: 176 GWIVGKPAILLHTSDAGESW--ERI---PLSSQ----LPGDMAFWQPHNRAVARR----- 221
G VG +++L T D G++W ++I P +S+ L G A H A A R
Sbjct: 132 GVAVGLWSLVLTTDDGGKTWIEQKIDAPPGASRADLNLMGLFADGAGHLYATAERGQLLR 191
Query: 222 --IQNMGWR-----ADGGLW---------LLVRG--GGLFLSKGTGITEEFEEVPVQSR- 262
Q WR G LW LLV G G L S G ++ VP+QS+
Sbjct: 192 SDDQGKHWRYLDTGYSGTLWTGAVLGDGSLLVGGQRGTLLHSSADG--SNWQRVPLQSKS 249
Query: 263 GFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
+DV R+ A G G+++++ +GG ++ + ++D ++
Sbjct: 250 SVTAIDVSGRA---VIAVGLDGLMVRSDDGGSSFHEQSSSDGVS 290
>gi|71909391|ref|YP_286978.1| glycosyl hydrolase [Dechloromonas aromatica RCB]
gi|71849012|gb|AAZ48508.1| Glycosyl hydrolase, BNR repeat [Dechloromonas aromatica RCB]
Length = 321
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 21/158 (13%)
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
W+ G A++ ++D G++W+ L + +AVA + GL ++
Sbjct: 139 WVAGTNAVIAGSADQGKTWQVTDLGEDTQITTIQFVNDKQAVAL--------GEFGLTVM 190
Query: 237 VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
GG KG I +F + L +R E W +G +G +L T +GG+TW
Sbjct: 191 SEDGGATWKKGPKIPGDFYP-------YAAL---FRDAREGWVSGIAGQMLHTRDGGQTW 240
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
++ A + N F+++ F +GN GV+ + G
Sbjct: 241 QKQVNATQASLNRL---FMHDGGPFAVGNGGVIARLEG 275
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW--APRSIPSAEEEDFNYRFNSISFKGK 174
+ I FV D LG + ++DGG TW P+ IP DF Y + ++ +
Sbjct: 168 ITTIQFVND--KQAVALGEFGLTVMSEDGGATWKKGPK-IPG----DF-YPYAALFRDAR 219
Query: 175 EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQP------HNRAVARRIQNMGWR 228
EGW+ G +LHT D G++W++ ++Q + F N V R++ WR
Sbjct: 220 EGWVSGIAGQMLHTRDGGQTWQKQVNATQASLNRLFMHDGGPFAVGNGGVIARLEGDSWR 279
>gi|385329750|ref|YP_005883701.1| BNR/Asp-box repeat-containing protein [Marinobacter adhaerens HP15]
gi|311692900|gb|ADP95773.1| BNR/Asp-box repeat protein [Marinobacter adhaerens HP15]
Length = 386
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R +++++D G TW + I S + D + S S K GW VG ++LL T D G
Sbjct: 81 VGLRGLIIKSEDDGTTW--QQISSPVDTDLVDVYFSDS---KNGWAVGHDSVLLQTEDGG 135
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLF-LSKGTGIT 251
SW S L G + + ++N + + L R L + T +
Sbjct: 136 SSW-----SVNLDG---------KKLKTLLENH-YSSAPSLDDFERENMLAEIDFATSTS 180
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR--EKAADNIAANL 309
E +P L+V E + G G+LL T + G++W+ E+ + +L
Sbjct: 181 ANPEVIPTP-----FLNVHIDENGEGYVLGAFGMLLYTDDNGQSWVPWIERTDNERRMHL 235
Query: 310 YSVKFINEKKGFVLGNDGVLLQ 331
Y + ++ ++ G G+L++
Sbjct: 236 YGIASADDGSMYISGEQGLLMR 257
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 40/136 (29%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR--- 152
KSE+ + W+++ PVD +V D+ F D +G+ +G LL+T+DGG +W+
Sbjct: 89 KSEDDGTTWQQISSPVDTDLV--DVYF--SDSKNGWAVGHDSVLLQTEDGGSSWSVNLDG 144
Query: 153 ------------SIPSAEEEDFNYRFNSISF---------------------KGKEGWIV 179
S PS ++ + I F + EG+++
Sbjct: 145 KKLKTLLENHYSSAPSLDDFERENMLAEIDFATSTSANPEVIPTPFLNVHIDENGEGYVL 204
Query: 180 GKPAILLHTSDAGESW 195
G +LL+T D G+SW
Sbjct: 205 GAFGMLLYTDDNGQSW 220
>gi|119898543|ref|YP_933756.1| hypothetical protein azo2252 [Azoarcus sp. BH72]
gi|119670956|emb|CAL94869.1| conserved hypothetical BNR domain protein [Azoarcus sp. BH72]
Length = 326
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 114/287 (39%), Gaps = 29/287 (10%)
Query: 45 CSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAW 104
SL ++ S+SS+ + + L R V+ A ++ G Y +S + +W
Sbjct: 22 VSLHAAGSASSAGPVPAMKARLAARVPVTGMARAGDAL---VAVGDYGTVVRSTDNGKSW 78
Query: 105 ERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNY 164
++ +PV +L + F D G+ +G +L T DGG W + + + +
Sbjct: 79 QQAEVPVSS--LLTAVHFA--DAQRGWAVGHGGVVLATTDGGANWTLQQVLDDKPVLLSV 134
Query: 165 RFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQN 224
F S + G+ VG T D G+SWE + + D+ N A R
Sbjct: 135 YFASA----ERGYAVGAYGTAWRTEDGGQSWEPMSVGQGRDADLHL----NHIFATR--- 183
Query: 225 MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSG 284
G L++ G F S G + + V +G L+ G D+ G SG
Sbjct: 184 -----QGALYVAAETGLAFRSTDGGDSWTALKPGVSGSLWGGLEAG----DDVVLLGMSG 234
Query: 285 VLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
+L + +GG +W + + +L + K V+G GV+L+
Sbjct: 235 RVLASRDGGDSW--RAVSGDTEQSLTGAVSTADGKLLVVGAGGVMLR 279
>gi|392951850|ref|ZP_10317405.1| hypothetical protein WQQ_14770 [Hydrocarboniphaga effusa AP103]
gi|391860812|gb|EIT71340.1| hypothetical protein WQQ_14770 [Hydrocarboniphaga effusa AP103]
Length = 323
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 26/158 (16%)
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQ-LPGDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
W+VG + +LH+ D G SW++ + + F N VA + +DGG
Sbjct: 135 WVVGTYSTVLHSGDRGVSWQKTEFGQDAILTTIRFIDAGNAVVAGEFGIVARSSDGG--- 191
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
+E +P F DV + D W G G++L T +GG++
Sbjct: 192 ----------------ASWEMLPPIPDDFYAFDVWFTDADTGWLTGRGGIILGTRDGGQS 235
Query: 296 WIREKAADNIAANLYSVKFINEKKG--FVLGNDGVLLQ 331
W E AA + F++ G F +G G++ Q
Sbjct: 236 WTPETN----AAGVPMYGFLSGAGGRLFAVGELGLIQQ 269
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 87 TTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGG 146
G Y S + +W++ D +L I F+ D + + G + + DGG
Sbjct: 136 VVGTYSTVLHSGDRGVSWQKTEFGQD--AILTTIRFI--DAGNAVVAGEFGIVARSSDGG 191
Query: 147 KTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
+W +P + DF Y F+ GW+ G+ I+L T D G+SW
Sbjct: 192 ASW--EMLPPIPD-DF-YAFDVWFTDADTGWLTGRGGIILGTRDGGQSW 236
>gi|170736732|ref|YP_001777992.1| glycosyl hydrolase BNR repeat-containing glycosyl hydrolase
[Burkholderia cenocepacia MC0-3]
gi|169818920|gb|ACA93502.1| glycosyl hydrolase BNR repeat-containing protein [Burkholderia
cenocepacia MC0-3]
Length = 322
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D HG+ +G +L T DGG TW + + ++ ++ F+ + ++G VG +++
Sbjct: 93 DAKHGWAVGQWGAILATDDGGDTWVTQRLDTSVDQPL---FSVLFTNARDGIAVGLWSLM 149
Query: 186 LHTSDAGESWERIPL 200
L T D G++W R L
Sbjct: 150 LQTHDGGKTWARTTL 164
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + VPV + + V + WA G G +L T +GG TW+
Sbjct: 62 GIVLLSDDEGRTWRQARRVPVSAT---LSAVSFADAKHGWAVGQWGAILATDDGGDTWVT 118
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++ ++ L+SV F N + G +G ++LQ
Sbjct: 119 QRLDTSVDQPLFSVLFTNARDGIAVGLWSLMLQ 151
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPS---AEEEDFNYRFNSISFKGKEGWIVGKPAILL 186
G +G +L+T DGGKTWA ++P + D N ++ + + ++V + ++L
Sbjct: 140 GIAVGLWSLMLQTHDGGKTWARTTLPKPPGGGKADRNL-YHVFTDAAQALYVVSEQGMVL 198
Query: 187 HTSDAGESWERIP 199
++D G +W +P
Sbjct: 199 KSADGGANWVYLP 211
>gi|378951278|ref|YP_005208766.1| glycosyl hydrolase [Pseudomonas fluorescens F113]
gi|359761292|gb|AEV63371.1| glycosyl hydrolase [Pseudomonas fluorescens F113]
Length = 376
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 46/210 (21%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDF-NYRFNSISFKGKEGWIVGKPAILLHTSDA 191
+G + + D G+TW R + S D RF + GW+VG A+++ T+D
Sbjct: 73 VGLHGLIQRSTDDGRTW--RQVDSPVSSDLVQVRFR----DERNGWVVGHDALVMRTTDG 126
Query: 192 GESWERIPLSSQLPGDM------AFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS 245
G+SW+ QL G A++ P + D L++R + ++
Sbjct: 127 GDSWQ-----VQLDGRRLLTLLNAYYGPRAE-----------KGDEAAALVLR--EVAMA 168
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR--EKAAD 303
T T + P LDV + + G G+LL + + G++W E++ +
Sbjct: 169 ASTSATPDVLAAP-------FLDVMFNEHGSGFVVGAFGMLLHSADNGQSWEPWIERSDN 221
Query: 304 NIAANLYSVK------FINEKKGFVLGNDG 327
+ +LY + +I ++G +L DG
Sbjct: 222 DRRMHLYGLAQHAGAFYIAGEQGLLLRLDG 251
>gi|374368431|ref|ZP_09626481.1| BNR repeat-containing glycosyl hydrolase [Cupriavidus basilensis
OR16]
gi|373100030|gb|EHP41101.1| BNR repeat-containing glycosyl hydrolase [Cupriavidus basilensis
OR16]
Length = 321
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 85/206 (41%), Gaps = 27/206 (13%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D +G +L T+D G TW P P + + R + +S G W VG +L
Sbjct: 95 DARRAVAVGNEGVVLTTEDAGLTWTPAQAPKSAISNKLMRVH-VSQDG-SAWAVGSGGVL 152
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLV-RGGGLFL 244
L + D G+SW+ S G+ A W G DG +V G + +
Sbjct: 153 LRSRDYGKSWQ-----SAAQGEDAAWN-------------GIDFDGQRGCVVGEFGRIRV 194
Query: 245 SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADN 304
S G + PV+ ++ V +R A A G SG +L + NGG +W +A
Sbjct: 195 SSDAGESWTSVSSPVK---HSLMSVRFRDASHAVAVGLSGTVLVSDNGGASWT--QAGKA 249
Query: 305 IAANLYSVKFINEKKGFVLGNDGVLL 330
+L V + + + +G+ GV+L
Sbjct: 250 TEEDLLDVAW-DGNQWIAVGDKGVVL 274
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLP-GDMAFWQPHNRAVARRIQNMGWRADGGLWL 235
W VG +L++ DAG++W + +SQ D+A W ARR +G
Sbjct: 59 WAVGTNGKILYSDDAGQNWRKQSAASQETLQDIAAWD------ARRAVAVG--------- 103
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
G + ++ G+T + P + ++ V AWA G GVLL++ + GK+
Sbjct: 104 --NEGVVLTTEDAGLTWTPAQAPKSAISNKLMRVHVSQDGSAWAVGSGGVLLRSRDYGKS 161
Query: 296 WIREKAADNIAANLYSVKFINEKKGFVLGNDG 327
W + AA A + F + ++G V+G G
Sbjct: 162 W--QSAAQGEDAAWNGIDF-DGQRGCVVGEFG 190
>gi|107027375|ref|YP_624886.1| BNR repeat-containing glycosyl hydrolase [Burkholderia cenocepacia
AU 1054]
gi|116693915|ref|YP_839448.1| BNR repeat-containing glycosyl hydrolase [Burkholderia cenocepacia
HI2424]
gi|105896749|gb|ABF79913.1| glycosyl hydrolase, BNR repeat protein [Burkholderia cenocepacia AU
1054]
gi|116651915|gb|ABK12555.1| glycosyl hydrolase, BNR repeat-containing protein [Burkholderia
cenocepacia HI2424]
Length = 322
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D HG+ +G +L T DGG TW + + ++ ++ F+ + ++G VG +++
Sbjct: 93 DAKHGWAVGQWGAILATDDGGDTWVTQRLDTSVDQPL---FSVLFTNARDGIAVGLWSLM 149
Query: 186 LHTSDAGESWERIPL 200
L T D G++W R L
Sbjct: 150 LQTHDGGKTWARTTL 164
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + VPV + + V + WA G G +L T +GG TW+
Sbjct: 62 GIVLLSDDDGRTWRQARRVPVSAT---LSAVSFADAKHGWAVGQWGAILATDDGGDTWVT 118
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++ ++ L+SV F N + G +G ++LQ
Sbjct: 119 QRLDTSVDQPLFSVLFTNARDGIAVGLWSLMLQ 151
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPS---AEEEDFNYRFNSISFKGKEGWIVGKPAILL 186
G +G +L+T DGGKTWA ++P + D N ++ + ++V + ++L
Sbjct: 140 GIAVGLWSLMLQTHDGGKTWARTTLPKPPGGGKADRNL-YHVFADPAHALYVVSEQGMVL 198
Query: 187 HTSDAGESWERIP 199
++D G +W +P
Sbjct: 199 KSADGGANWVYLP 211
>gi|431802698|ref|YP_007229601.1| BNR repeat-containing protein [Pseudomonas putida HB3267]
gi|430793463|gb|AGA73658.1| BNR repeat-containing protein [Pseudomonas putida HB3267]
Length = 320
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 102/257 (39%), Gaps = 62/257 (24%)
Query: 103 AWERVYIPVDPGVVLLD---------------------IAFVPDDLNHGFLLGTRQTLLE 141
A ERV D GVVLL ++FV D G+ +G +L
Sbjct: 48 AGERVVAVGDHGVVLLSDDQGKQWRQARSVPLSTPLTGVSFV--DAKRGWAVGHWGAILA 105
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER---- 197
T DGG++W + + + E+ F F ++G VG +++L T D G +W
Sbjct: 106 TTDGGESWQVQRLATEEDRPL---FAVHFFNARQGVAVGLWSLVLTTEDGGLTWAEQAVQ 162
Query: 198 ------------IPLSSQLPGDMAFWQPHNRAVARRIQNMGWR-----ADGGLW------ 234
+ L + G + H + + WR +G LW
Sbjct: 163 APPGAKRADLNLMGLFADSRGTLYATAEHGQVLHSEDHGKNWRYLDTGYEGTLWSGAVLA 222
Query: 235 ---LLVRGGGLFLSKGTGITEEFEEVPVQSRG--FGILDVGYRSQDEAWAAGGSGVLLKT 289
LL+ G L +G+ + F VP QS+G + G R A G G+++++
Sbjct: 223 DGRLLLGGQRGTLLQGSADGKGFRRVPTQSKGSVTCVAVAGSR----VLAVGLDGLMVQS 278
Query: 290 TNGGKTWIREKAADNIA 306
++GG ++ ++AD ++
Sbjct: 279 SDGGHSFEETQSADGLS 295
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
V + WA G G +L TT+GG++W ++ A L++V F N ++G +G
Sbjct: 86 VSFVDAKRGWAVGHWGAILATTDGGESWQVQRLATEEDRPLFAVHFFNARQGVAVG 141
>gi|206561992|ref|YP_002232755.1| BNR/Asp-box repeat protein [Burkholderia cenocepacia J2315]
gi|444357556|ref|ZP_21159086.1| BNR/Asp-box repeat protein [Burkholderia cenocepacia BC7]
gi|444369635|ref|ZP_21169361.1| BNR/Asp-box repeat protein [Burkholderia cenocepacia K56-2Valvano]
gi|198038032|emb|CAR53978.1| BNR/Asp-box repeat protein [Burkholderia cenocepacia J2315]
gi|443598873|gb|ELT67196.1| BNR/Asp-box repeat protein [Burkholderia cenocepacia K56-2Valvano]
gi|443606160|gb|ELT73957.1| BNR/Asp-box repeat protein [Burkholderia cenocepacia BC7]
Length = 322
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D HG+ +G +L T DGG TW + + ++ ++ F+ + ++G VG +++
Sbjct: 93 DAKHGWAVGQWGAILATDDGGDTWVTQRLDTSVDQPL---FSVLFTSARDGMAVGLWSLM 149
Query: 186 LHTSDAGESWERIPL 200
L T D G +W R L
Sbjct: 150 LQTHDGGRTWARTTL 164
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + VPV + + V + WA G G +L T +GG TW+
Sbjct: 62 GIVLLSDDDGKTWRQARRVPVAAT---LSAVSFADAKHGWAVGQWGAILATDDGGDTWVT 118
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++ ++ L+SV F + + G +G ++LQ
Sbjct: 119 QRLDTSVDQPLFSVLFTSARDGMAVGLWSLMLQ 151
>gi|254249392|ref|ZP_04942712.1| hypothetical protein BCPG_04255 [Burkholderia cenocepacia PC184]
gi|124875893|gb|EAY65883.1| hypothetical protein BCPG_04255 [Burkholderia cenocepacia PC184]
Length = 322
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D HG+ +G +L T DGG TW + + ++ ++ F+ + ++G VG +++
Sbjct: 93 DAKHGWAVGQWGAILATDDGGDTWVTQRLDTSVDQPL---FSVLFTNARDGIAVGLWSLM 149
Query: 186 LHTSDAGESWERIPL 200
L T D G++W R L
Sbjct: 150 LQTHDGGKTWARTTL 164
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
V + WA G G +L T +GG TW+ ++ ++ L+SV F N + G +G +
Sbjct: 89 VSFADAKHGWAVGQWGAILATDDGGDTWVTQRLDTSVDQPLFSVLFTNARDGIAVGLWSL 148
Query: 329 LLQ 331
+LQ
Sbjct: 149 MLQ 151
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPS---AEEEDFNYRFNSISFKGKEGWIVGKPAILL 186
G +G +L+T DGGKTWA ++P + D N ++ + ++V + ++L
Sbjct: 140 GIAVGLWSLMLQTHDGGKTWARTTLPKPPGGGKADRNL-YHVFADPAHALYVVSEQGMVL 198
Query: 187 HTSDAGESWERIP 199
++D G +W +P
Sbjct: 199 KSADGGANWVYLP 211
>gi|398838108|ref|ZP_10595391.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM102]
gi|398117149|gb|EJM06903.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM102]
Length = 367
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 92 EQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP 151
+QP + A R + P LD+ F D HG+++G + T DGG+ W P
Sbjct: 146 DQPGGASHLAQA--RQMLDDGPDKPFLDLYF--SDRLHGYIVGAYNQIYRTDDGGRNWRP 201
Query: 152 RSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
+ N +I G + +VG+ +LL ++DAG S++ PL S G
Sbjct: 202 WMQHVNNPQGLN--LYAIRASGNDLLLVGERGLLLRSTDAGHSFQ--PLKSPYEG 252
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 52/254 (20%)
Query: 82 ISLAATTGLYEQPA-KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLL 140
++ AAT + +QPA + +A A VLL +A + L +G R +L
Sbjct: 30 VAQAATFAVLQQPALPTAKAARA------------VLLGLARAGERL---VAVGERGIVL 74
Query: 141 ETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIP 199
+ D G TW +P + ++ F ++GW VG ++LHT D GE+W +
Sbjct: 75 LSDDSGMTWRQARVP------VSVSLTAVQFVDAEQGWAVGHLGVVLHTEDGGETWHK-- 126
Query: 200 LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPV 259
QL G+ RA A +Q AD GG L++ + ++ + P
Sbjct: 127 ---QLDGE--------RAAALAVQAAERDAD------QPGGASHLAQARQMLDDGPDKP- 168
Query: 260 QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANLYSVKFINE 317
LD+ + + + G + +T +GG+ W + + NLY+++
Sbjct: 169 ------FLDLYFSDRLHGYIVGAYNQIYRTDDGGRNWRPWMQHVNNPQGLNLYAIRASGN 222
Query: 318 KKGFVLGNDGVLLQ 331
++G G+LL+
Sbjct: 223 DL-LLVGERGLLLR 235
>gi|392968595|ref|ZP_10334011.1| oxidoreductase, putative [Fibrisoma limi BUZ 3]
gi|387842957|emb|CCH56065.1| oxidoreductase, putative [Fibrisoma limi BUZ 3]
Length = 352
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 21/210 (10%)
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF---NYRFNSISFKGKEGWIVGKPAILLH 187
++ GTR T + T +GG++W +P A+ DF + + ++ G A +
Sbjct: 55 WIGGTRGTFVHTSNGGQSWEQGQVPGADSCDFRDVHAVDDQTAYLMSAGPAEKGQARIYK 114
Query: 188 TSDAGESWERIPLSSQ---LPGDMAFW-QPHNRAVARRIQNMGW----RADGG-LWLLVR 238
T+D G +W ++ + Q M FW + H + N W DGG W V
Sbjct: 115 TTDGGRNWTQLYETKQAGVFFDGMDFWDKQHGIVFSDPPANGKWFILTTDDGGKTWQPVP 174
Query: 239 GGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
L + E + G ++ G R+ A G G + ++T+ GKTW
Sbjct: 175 PEAL-------PAMQPNEAAFAASGTSLVVQGKRNVWIASGGGTVGRVFRSTDRGKTWAV 227
Query: 299 EKA--ADNIAANLYSVKFINEKKGFVLGND 326
A L+ ++F NEK G +G +
Sbjct: 228 SNTPLPAGSATGLFGLRFFNEKNGMAVGGN 257
>gi|416983426|ref|ZP_11938228.1| glycosyl hydrolase [Burkholderia sp. TJI49]
gi|325519380|gb|EGC98792.1| glycosyl hydrolase [Burkholderia sp. TJI49]
Length = 310
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 26/207 (12%)
Query: 1 MGSSLRLSEPMMLVKPSLSSLFAPRLNRTNAQAQQPRFISTS-RACSLPSSDSSSS---S 56
+G++L P L ++++ A RL R ++ R L S D+ +
Sbjct: 6 LGAALFAFSPRPLPAFPVTAIHADRLQINGLAKAGSRIVAVGERGVILLSDDAGRRWRPA 65
Query: 57 SSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIP---VDP 113
S + +S+L + +FV+ T L G + +S++A W V++ DP
Sbjct: 66 SVTPEQASTLTQVRFVTPT--------LGIAVGHDGRIVRSDDAGLHWREVHVDREHSDP 117
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
+ + A P F G+ LL + D G TW P+ + N+I G
Sbjct: 118 LLSIWGTAGGPL-----FAAGSFGQLLRSDDAGLTWQKIGTPAGDRH-----LNAIVGDG 167
Query: 174 KEGW-IVGKPAILLHTSDAGESWERIP 199
+ IVG+ LL ++D G SW+++P
Sbjct: 168 RGTLLIVGESGTLLRSTDNGVSWDKLP 194
>gi|345856428|ref|ZP_08808913.1| BNR/Asp-box repeat family protein [Desulfosporosinus sp. OT]
gi|344330491|gb|EGW41784.1| BNR/Asp-box repeat family protein [Desulfosporosinus sp. OT]
Length = 363
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 100/239 (41%), Gaps = 47/239 (19%)
Query: 126 DLNHGFLLGTRQT------LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG------ 173
D HG+L+ L +T DGG TW I A D + N + F G
Sbjct: 121 DSRHGWLMAVYSQHNCPAELFKTIDGGITW----IQIASVYDL-VKNNGLPFGGEISFRD 175
Query: 174 -KEGWIVGK--PAI--LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR 228
K GW+VG+ P+I L T D G +W+R L +LP + ++ R + +
Sbjct: 176 PKIGWLVGRLDPSIQLLYRTQDGGLTWQRQKL--KLPVGY-----ESGELSVRDSPVFFS 228
Query: 229 ADGGL----WLLVRGGG-----LFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA 279
A+ GL ++ G G L+ +K G T + P+Q +G Y W
Sbjct: 229 ANEGLLTAIYVPKNGQGNSATILYTTKDGGQTWQ-SRTPLQFQGIVDFTDAYNGWSWQWK 287
Query: 280 AGGSGVLLKTTNGGKTWIREKAADNI------AANLYSVKFINEKKGFVL--GNDGVLL 330
L T++GGKTW + N+ ++ + FIN+K G+ L NDG L+
Sbjct: 288 TSAKKELYHTSDGGKTWTGIEPDQNLKHFLDQGLDVAELDFINDKIGWALLISNDGQLV 346
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 94/235 (40%), Gaps = 60/235 (25%)
Query: 106 RVYIPVDPGVVLLDIAFVPD----------------DLNHGFLLG----TRQTLLETKDG 145
++ +D G+ + IA V D D G+L+G + Q L T+DG
Sbjct: 139 ELFKTIDGGITWIQIASVYDLVKNNGLPFGGEISFRDPKIGWLVGRLDPSIQLLYRTQDG 198
Query: 146 GKTWAPRSIP---SAEEEDFNYRFNSISFKGKEGWIV---------GKPAILLHTS-DAG 192
G TW + + E + + R + + F EG + G A +L+T+ D G
Sbjct: 199 GLTWQRQKLKLPVGYESGELSVRDSPVFFSANEGLLTAIYVPKNGQGNSATILYTTKDGG 258
Query: 193 ESWE-RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR------ADGGLWLLVRGGGLFLS 245
++W+ R PL Q G + F +N GW A L+ GG +
Sbjct: 259 QTWQSRTPL--QFQGIVDFTDAYN----------GWSWQWKTSAKKELYHTSDGGKTW-- 304
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA----GGSGVLLKTTNGGKTW 296
TGI + +G + ++ + + WA G VLL+TT+GG +W
Sbjct: 305 --TGIEPDQNLKHFLDQGLDVAELDFINDKIGWALLISNDGQLVLLRTTDGGDSW 357
>gi|308069228|ref|YP_003870833.1| hypothetical protein PPE_02465 [Paenibacillus polymyxa E681]
gi|305858507|gb|ADM70295.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 424
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 126 DLNHGFLLGTRQT---LLETKDGGKTWAPRSIPSAEEEDFNYRF---NSISF-KGKEGWI 178
D N G + G L +T DGGKTW +I +E F + ISF + GW+
Sbjct: 84 DNNKGLVWGVTHNELRLYDTHDGGKTW--NNISPSENVQFQDKLEYGKDISFTDSRHGWV 141
Query: 179 VGK-----PAILLHTSDAGESWERIPLSSQLPGD----MAFWQPHNRAVARRIQNMGWRA 229
V + ++L T+D G+SW+ L S GD + + P + ++ G
Sbjct: 142 VRQNLDKTATVILRTADGGQSWDVSALPS---GDHVSSIQYVNPTTGWIMAYVKLNGQDQ 198
Query: 230 DGGLWLLVRGGGLF--LSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA---GGSG 284
L+ GG + +++ +G+T + RG + + + S ++ + A S
Sbjct: 199 QKLLYHTTDGGATWNKVAQSSGMTSNKSGSGLPDRG-SLAGMSFSSNNQGFVAINLDSSV 257
Query: 285 VLLKTTNGGKTW 296
L KT+N GKTW
Sbjct: 258 KLYKTSNQGKTW 269
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 22/100 (22%)
Query: 119 DIAFVPDDLNHGFLL-----GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-K 172
DI+F D HG+++ T +L T DGG++W ++PS + +SI +
Sbjct: 130 DISFT--DSRHGWVVRQNLDKTATVILRTADGGQSWDVSALPSGDH------VSSIQYVN 181
Query: 173 GKEGWIVG--------KPAILLHTSDAGESWERIPLSSQL 204
GWI+ + +L HT+D G +W ++ SS +
Sbjct: 182 PTTGWIMAYVKLNGQDQQKLLYHTTDGGATWNKVAQSSGM 221
>gi|392537686|ref|ZP_10284823.1| hypothetical protein Pmarm_06138 [Pseudoalteromonas marina mano4]
Length = 331
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 47/191 (24%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDFNYRFNSISF 171
P VLL D+ N G+ G T++ T DGG W ++ PS ++ + I F
Sbjct: 70 PTQVLLTAVDFSDEKN-GWACGHDATIINTVDGGNNWQLQQAKPSLDKPCLD-----ILF 123
Query: 172 KGK-EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQN---MGW 227
K K EG+ VG + HT+D G+ WE+ L S L + +R +++ G+
Sbjct: 124 KDKLEGFAVGAYGMFYHTTDGGKQWEKRFLDSLLFSE-------DRDYLNDLKDNDPEGY 176
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLL 287
A+ I F + S G ++ G G+L
Sbjct: 177 EAETA----------------SILPHFNRIEQTSEGLMLV-------------GEMGLLA 207
Query: 288 KTTNGGKTWIR 298
++T+ GKTW+R
Sbjct: 208 RSTDNGKTWLR 218
>gi|119774727|ref|YP_927467.1| BNR repeat-containing protein [Shewanella amazonensis SB2B]
gi|119767227|gb|ABL99797.1| BNR repeat protein [Shewanella amazonensis SB2B]
Length = 336
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
+W++V P D L + F+ + L G+ +G T++ T+DGGKTW + E F
Sbjct: 63 SWQQVETPTD--AQLTKVFFLNNQL--GWAVGHDATIIHTQDGGKTWNKQFSAPERERPF 118
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
+ + K G+ VG + T D G+ W+ +
Sbjct: 119 ---MDVLFVDDKRGFAVGAYGLFFTTFDGGKQWQEV 151
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 278 WAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
WA G ++ T +GGKTW ++ +A V F+++K+GF +G G+
Sbjct: 87 WAVGHDATIIHTQDGGKTWNKQFSAPERERPFMDVLFVDDKRGFAVGAYGLFF 139
>gi|124266137|ref|YP_001020141.1| hypothetical protein Mpe_A0944 [Methylibium petroleiphilum PM1]
gi|124258912|gb|ABM93906.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 336
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSD 190
+ +G LL + D G+TW R++P + +N++SF G+ GW+VG+ ++ ++D
Sbjct: 154 WAVGEFGALLRSDDKGQTWT-RALPEKDRA-----WNAVSFIGQTGWLVGEFGAVMRSTD 207
Query: 191 AGESWERIPLSSQLP-GDMAFWQP-HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT 248
G +W I +++ ++F P H AV GL G L ++
Sbjct: 208 GGANWTDIETKNKVSLMAVSFRDPQHGVAV-------------GL-----AGTLVVTNDG 249
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAW-AAGGSGVLLKTTNGGKTWIREKAAD 303
G+T E P + +LDV + + W A G GV++ + +TW + +D
Sbjct: 250 GLTWSDVERPTREH---LLDVIW--DENRWTAVGDKGVMVSSDATAQTWKARRISD 300
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 25/172 (14%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D H +G +L T +GG W ++PS+ N F F G W VG+ L
Sbjct: 106 DAMHAVAVGNNGVILVTTNGGNLWTAATLPSSGNP--NKLFRVRIFDGV-AWAVGEFGAL 162
Query: 186 LHTSDAGESWER-IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
L + D G++W R +P + ++F I G WL+ G +
Sbjct: 163 LRSDDKGQTWTRALPEKDRAWNAVSF-----------IGQTG-------WLVGEFGAVMR 204
Query: 245 SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
S G + ++ +++ ++ V +R A G +G L+ T +GG TW
Sbjct: 205 STDGG--ANWTDIETKNK-VSLMAVSFRDPQHGVAVGLAGTLVVTNDGGLTW 253
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
F K + ++ E V+ R + + AWAAG G ++ T +GGKTW R+ A
Sbjct: 36 FFVKAEAVIKKVEPKAVERRD-NFFSIATPNDQVAWAAGSGGKIVHTVDGGKTWQRQSTA 94
Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVLL 330
NL + + +GN+GV+L
Sbjct: 95 --TLENLQGIAAWDAMHAVAVGNNGVIL 120
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 39/204 (19%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW------IVGKPAILLH 187
G+ ++ T DGGKTW +S + E + +G W VG ++L
Sbjct: 73 GSGGKIVHTVDGGKTWQRQSTATLE-----------NLQGIAAWDAMHAVAVGNNGVILV 121
Query: 188 TSDAGESWERIPL-SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK 246
T++ G W L SS P N+ RI DG W + G L S
Sbjct: 122 TTNGGNLWTAATLPSSGNP---------NKLFRVRI------FDGVAWAVGEFGALLRSD 166
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
G T +P + R + V + Q W G G ++++T+GG W + + ++
Sbjct: 167 DKGQTWT-RALPEKDRAWNA--VSFIGQ-TGWLVGEFGAVMRSTDGGANWTDIETKNKVS 222
Query: 307 ANLYSVKFINEKKGFVLGNDGVLL 330
L +V F + + G +G G L+
Sbjct: 223 --LMAVSFRDPQHGVAVGLAGTLV 244
>gi|325275586|ref|ZP_08141488.1| BNR domain-containing protein [Pseudomonas sp. TJI-51]
gi|324099260|gb|EGB97204.1| BNR domain-containing protein [Pseudomonas sp. TJI-51]
Length = 352
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 95/253 (37%), Gaps = 44/253 (17%)
Query: 84 LAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETK 143
LA+ + PA + + LS V P VLLDI L +G R +L +
Sbjct: 11 LASCSLTMVAPAGANDGLS-QASVLGPQALHAVLLDIDHAGARL---IAVGERGVVLLSD 66
Query: 144 DGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPLSS 202
D G +W R PS + S+ F GW VG ++LH++DAG SW+ + L
Sbjct: 67 DNGLSW--RQAPSP----VSTTLTSVQFVDSSNGWAVGHSGVVLHSADAGVSWQ-VQLDG 119
Query: 203 QLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSR 262
+ + A+R L+ ++ + + P
Sbjct: 120 TQAAAIELHAAEHSGDAKR----------------------LASAQRLSADGADKP---- 153
Query: 263 GFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAAD--NIAANLYSVKFINEKKG 320
+L + + G G+ L T +GGKTW + K D N Y + K
Sbjct: 154 ---LLAINFSDAHNGIVVGAYGLALLTRDGGKTW-QSKMGDLPNPRGLHYYAMARHHDKI 209
Query: 321 FVLGNDGVLLQYL 333
+ G G+LL+ +
Sbjct: 210 LIAGEQGLLLRSM 222
>gi|237653632|ref|YP_002889946.1| hypothetical protein Tmz1t_2970 [Thauera sp. MZ1T]
gi|237624879|gb|ACR01569.1| conserved hypothetical protein [Thauera sp. MZ1T]
Length = 343
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 30/172 (17%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G W A + ++SF +EGW VG ++LH++D
Sbjct: 82 VGERGVVLLSDDEGAHWR-----QAGTVPVDATLTAVSFADAREGWAVGHLGVILHSADG 136
Query: 192 GESW--ERI-PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT 248
GE+W +RI P+ + +AF N GLW L + ++
Sbjct: 137 GETWSVQRIDPVEDRPLFAVAFTDARNGVAV------------GLWSL-----MLRTRDG 179
Query: 249 GITEEFEEVPV---QSRG-FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
G T E E+P +R ++ V + + AG G++L++ +GG TW
Sbjct: 180 GRTWEAAELPPPPGDTRADANLMSVFGDGEGRLFIAGERGLVLRSLDGGATW 231
>gi|399545575|ref|YP_006558883.1| hypothetical protein MRBBS_2534 [Marinobacter sp. BSs20148]
gi|399160907|gb|AFP31470.1| hypothetical protein MRBBS_2534 [Marinobacter sp. BSs20148]
Length = 394
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA--PRSIPSAEEEDFNYRFN 167
PV+P LD+ F +D +HGF++G + T DGG W R + +A++ + N
Sbjct: 187 PVNP---FLDVWF--EDADHGFVIGAYGMIFHTDDGGNQWQDWARKLDNADK----FHLN 237
Query: 168 SISFKGKEGWIVGKPAILLHTS-DAGESWER 197
+I+ ++ A +H S D G +WER
Sbjct: 238 AITKISGGALVIAGEAGQIHVSEDNGITWER 268
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 19/168 (11%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R ++ + DGG W S+P + + F GW VG +LH+SD+
Sbjct: 69 VGERGHIIYSDDGGAKWTQASVP------VSVTLTGVDFGSASHGWAVGHSGAVLHSSDS 122
Query: 192 GESWERIPLSSQLPGDMAF--WQPHNRAVARRIQNMGWRADGGL-WLLVRGGGLFLSKGT 248
G +W + ++ ++A Q A +R++ G L W L +
Sbjct: 123 GSNW-TLQMTGIQAANLAIAGIQQEIEATEQRLETAAEDDVGDLEWALDD----LVFGLE 177
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ + PV LDV + D + G G++ T +GG W
Sbjct: 178 NMQADLSVGPVNP----FLDVWFEDADHGFVIGAYGMIFHTDDGGNQW 221
>gi|398863119|ref|ZP_10618697.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM78]
gi|398248830|gb|EJN34227.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM78]
Length = 318
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 26/194 (13%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ ++ P D L +AF D L G +G TLL T DGG+ W + +
Sbjct: 70 WQGIHTPADR--TLTGLAFANDRL--GIAVGHGATLLRTTDGGQQWTAVGVDGIGHDSL- 124
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQ 223
F G+ G L + DAG SW + + + +R +A+ +
Sbjct: 125 --FGVTYLGGQHFVAYGAFGHYLESVDAGLSWSKKTVMG---------ENFDRHIAKVL- 172
Query: 224 NMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA-GG 282
+ G L+L G L S+ G+ E + P + FG G ++ A A G
Sbjct: 173 ----KVGGDLFLFGESGTLLRSRDLGLNWEALQSPYEGSFFG----GLQTPSGALLAFGM 224
Query: 283 SGVLLKTTNGGKTW 296
G L ++ + G TW
Sbjct: 225 RGNLYRSNDQGDTW 238
>gi|398945020|ref|ZP_10671581.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM41(2012)]
gi|398157491|gb|EJM45878.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM41(2012)]
Length = 366
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 38/201 (18%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R ++ + D G TW S P + RF +EGW VG ++LH+ D G
Sbjct: 68 VGERGFIIVSDDNGGTWKQVSSPVSMTL-VKVRF----IDDREGWAVGHAGVVLHSQDGG 122
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
SW + QL G A A+R + +++ + +
Sbjct: 123 LSWNK-----QLDGVQAAEIELQE--AKRFDDAEK----------------IAQAQQLVD 159
Query: 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANLY 310
+ + P +LD+ + G G++ T +GG +W IR + + +LY
Sbjct: 160 DGPDKP-------LLDLLFLDAKNGLVVGAYGLVFVTHDGGLSWQSIRSRLENPNGLHLY 212
Query: 311 SVKFINEKKGFVLGNDGVLLQ 331
S++ ++ FV G G LL+
Sbjct: 213 SIERVDADL-FVAGEQGTLLR 232
>gi|409426596|ref|ZP_11261145.1| hypothetical protein PsHYS_18331 [Pseudomonas sp. HYS]
Length = 325
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 98/257 (38%), Gaps = 62/257 (24%)
Query: 103 AWERVYIPVDPGVVLLD---------------------IAFVPDDLNHGFLLGTRQTLLE 141
A ERV D G+VLL ++FV D HG+ +G +L
Sbjct: 48 AGERVVAVGDHGIVLLSDDQGRSYRQAHGVPLSSTLTAVSFVDD--RHGWAVGHWGAILA 105
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLS 201
++DGG+TW + I S + F F ++G VG ++++ T D G +W L
Sbjct: 106 SEDGGETWTVQRIDSDVDRPL---FAVHFFDRQQGVAVGLWSLIMTTDDGGRTWTECTLQ 162
Query: 202 SQLPGDMAFWQ----------------PHNRAVARRIQNMGWR-----ADGGLW------ 234
Q G A H + + + WR G LW
Sbjct: 163 PQPGGSRADLNLLSLFSDGRGAVYATAEHGKLLRSDDRGKTWRYLETGYQGSLWSGAVLP 222
Query: 235 ---LLVRGGGLFLSKGTGITEEFEEVPVQSRG--FGILDVGYRSQDEAWAAGGSGVLLKT 289
LLV G L +GT ++ +P+ SR I G R AG G+L+ +
Sbjct: 223 DGRLLVGGQRGTLLRGTPDASTWQRIPLTSRSSITAIQAEGKR----VLVAGLDGLLVNS 278
Query: 290 TNGGKTWIREKAADNIA 306
+GG T+ ++ D ++
Sbjct: 279 QDGGTTFGEARSDDGVS 295
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
V + WA G G +L + +GG+TW ++ ++ L++V F + ++G +G
Sbjct: 86 VSFVDDRHGWAVGHWGAILASEDGGETWTVQRIDSDVDRPLFAVHFFDRQQGVAVG 141
>gi|421476996|ref|ZP_15924849.1| BNR/Asp-box repeat protein [Burkholderia multivorans CF2]
gi|400227311|gb|EJO57318.1| BNR/Asp-box repeat protein [Burkholderia multivorans CF2]
Length = 322
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D HG+ +G +L T DGG TW + + ++ ++ F+ + ++G VG +++
Sbjct: 93 DAKHGWAVGQWGAILATDDGGDTWVTQRLDTSVDQPL---FSVLFTSAQDGIAVGLWSLM 149
Query: 186 LHTSDAGESWERIPL 200
L T D G +W R L
Sbjct: 150 LQTHDGGRTWTRTTL 164
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + VPV + + V + WA G G +L T +GG TW+
Sbjct: 62 GIVLLSDDDGNTWRQARRVPVSAT---LSAVSFADAKHGWAVGQWGAILATDDGGDTWVT 118
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++ ++ L+SV F + + G +G ++LQ
Sbjct: 119 QRLDTSVDQPLFSVLFTSAQDGIAVGLWSLMLQ 151
>gi|347753873|ref|YP_004861437.1| hypothetical protein [Candidatus Chloracidobacterium thermophilum
B]
gi|347586391|gb|AEP10921.1| Uncharacterized protein, plant photosystem II stability/assembly
factor like protein [Candidatus Chloracidobacterium
thermophilum B]
Length = 570
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 32/168 (19%)
Query: 174 KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL 233
++GW+ G+ LLHT D G W Q+ G A + ++ GW A GG
Sbjct: 259 EKGWVGGRRGTLLHTEDGGRHW-----VEQVTGTKA----NITSLFFLNAQTGWAAVGGT 309
Query: 234 WLL------VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLL 287
+ L + L G + E+ V+S F VG+ A G G +
Sbjct: 310 YGLDPAVDGIEPTILRTDDGGTLWRPIAELDVRSLWFVNEQVGF-------AVGNYGSVF 362
Query: 288 KTTNGGKTWI----------REKAADNIAANLYSVKFINEKKGFVLGN 325
+TT+GG TW R + + V+F++E++G+V GN
Sbjct: 363 RTTDGGATWTACEGLRRAIERPEGLPDAVLTFTLVQFLDERRGWVAGN 410
>gi|429747193|ref|ZP_19280480.1| BNR/Asp-box repeat protein [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429163816|gb|EKY06009.1| BNR/Asp-box repeat protein [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 461
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 28/225 (12%)
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
G V + D++ + ++ R + ++ +G + R +E + +Y+ N+
Sbjct: 256 GGVQFNRVICDDEMKNIIVVSIRGDVYKSTNGKDFYPIREANLSETSNVDYQGNAFKRDI 315
Query: 174 KEGWIVG------KPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
WI G KP IL + E W + +A P N+ +G+
Sbjct: 316 NHIWIAGLNGRKDKPKILFCNGN-NEQWTEYVFEDKFEWAVAVDFPTNQ--------IGY 366
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLL 287
L+ G + K T ++++P + G+ + ++ ++ W + G V+
Sbjct: 367 -------CLISGSVNKIYKSTDGGYSWQKLPFEIP-IGVRSLAFQDENIGWQSSGK-VIY 417
Query: 288 KTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
KTT+GG TW +E A++ LY + + + +DG+L +Y
Sbjct: 418 KTTDGGNTWQKEFEAESNIKKLYYTQNV----LYAFADDGLLYRY 458
>gi|171316118|ref|ZP_02905343.1| glycosyl hydrolase BNR repeat-containing protein [Burkholderia
ambifaria MEX-5]
gi|171098722|gb|EDT43516.1| glycosyl hydrolase BNR repeat-containing protein [Burkholderia
ambifaria MEX-5]
Length = 322
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D HG+ +G +L T DGG TW + + ++ ++ F+ + ++G VG +++
Sbjct: 93 DAKHGWAVGQWGAILATDDGGDTWVTQRLDTSVDQPL---FSVLFTSAQDGIAVGLWSLM 149
Query: 186 LHTSDAGESWERIPL 200
L T D G +W R L
Sbjct: 150 LQTHDGGRTWTRTTL 164
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + VPV + + V + WA G G +L T +GG TW+
Sbjct: 62 GIVLLSDDDGNTWRQARRVPVSAT---LSAVSFADAKHGWAVGQWGAILATDDGGDTWVT 118
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++ ++ L+SV F + + G +G ++LQ
Sbjct: 119 QRLDTSVDQPLFSVLFTSAQDGIAVGLWSLMLQ 151
>gi|295676638|ref|YP_003605162.1| glycosyl hydrolase [Burkholderia sp. CCGE1002]
gi|295436481|gb|ADG15651.1| BNR repeat-containing glycosyl hydrolase [Burkholderia sp.
CCGE1002]
Length = 331
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISFK-GK 174
L +AF D HG+ G +L T DGG+ W RS ++ F SI+F+ G+
Sbjct: 94 LTSVAFT--DARHGWAAGHWGVVLHTDDGGENWRVQRSDTGVDQPLF-----SIAFRDGR 146
Query: 175 EGWIVGKPAILLHTSDAGESWE 196
GW VG ++L+ T D G +W
Sbjct: 147 HGWAVGLWSLLVTTDDGGATWN 168
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G + EVP + + V + WAAG GV+L T +GG+ W
Sbjct: 70 GVILLSDDNGAHFRQAHEVPANAT---LTSVAFTDARHGWAAGHWGVVLHTDDGGENWRV 126
Query: 299 EKAADNIAANLYSVKFINEKKGFVLG 324
+++ + L+S+ F + + G+ +G
Sbjct: 127 QRSDTGVDQPLFSIAFRDGRHGWAVG 152
>gi|444919133|ref|ZP_21239180.1| hypothetical protein D187_02159 [Cystobacter fuscus DSM 2262]
gi|444708930|gb|ELW49964.1| hypothetical protein D187_02159 [Cystobacter fuscus DSM 2262]
Length = 604
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 19/120 (15%)
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
+L T+DAG SW+ IPL+ L Q H+ +Q++G R LWL G +F
Sbjct: 119 VLRTTDAGRSWKSIPLTDDL-------QVHD------LQHLGDR----LWLCGSSGRIFR 161
Query: 245 SKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAAD 303
S G + E + P L + + S + WA G L T +GG +W R D
Sbjct: 162 SDDAGASWRELKGTPFNDDDR-CLSMSFLSPESGWALGSKESLWSTEDGGTSWQRLPLGD 220
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 30/223 (13%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
IP+ + + D+ + D L +L G+ + + D G +W R + D + R S
Sbjct: 132 IPLTDDLQVHDLQHLGDRL---WLCGSSGRIFRSDDAGASW--RELKGTPFND-DDRCLS 185
Query: 169 ISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
+SF E GW +G L T D G SW+R+PL GD+ + R V R +++ W
Sbjct: 186 MSFLSPESGWALGSKESLWSTEDGGTSWQRLPL-----GDLTRTE-RLRRVVRLSRHVAW 239
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGV-L 286
GLW + E V +SR F D G Q +A + +
Sbjct: 240 LQGEGLW---------------VQGESGWVQGESRRFVTTDGGKTWQSKASEEKDPLLSV 284
Query: 287 LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+T +G + D + + + F+ E+K VLG D V+
Sbjct: 285 ARTPDGQRIITVRPTGDGVPLEQW-IPFLGEEKAVVLGADTVV 326
>gi|347754041|ref|YP_004861605.1| hypothetical protein [Candidatus Chloracidobacterium thermophilum
B]
gi|347586559|gb|AEP11089.1| hypothetical protein Cabther_A0323 [Candidatus Chloracidobacterium
thermophilum B]
Length = 724
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 15/194 (7%)
Query: 55 SSSSSSSSSSSLNRR---QFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPV 111
+++ SS+S + L +R V +T + AA GL+ +++ + WE+V +
Sbjct: 490 TAARSSASRTILRQRLKGHVVELVSTADGWLYAAAWDGLF----RTDNPVKGWEKVSLGA 545
Query: 112 DPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF 171
G V +A P + L G +L ++DGG TW +P +D I+F
Sbjct: 546 YRGRVF-SVAVSPQS-SEVILAGISDGMLVSQDGGATWQRADLPMKAFKDATC-VQEIAF 602
Query: 172 KGK--EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA 229
+ E VG + D G+SWER+ GD+A + + R + +G
Sbjct: 603 HPRRPETIFVGTRRTAYVSFDGGKSWERLARGIGF-GDIAVIRFNPRQADEVL--IGDAQ 659
Query: 230 DGGLWLLVRGGGLF 243
GGL+L V GG LF
Sbjct: 660 GGGLYLSVNGGQLF 673
>gi|124267458|ref|YP_001021462.1| hypothetical protein Mpe_A2271 [Methylibium petroleiphilum PM1]
gi|124260233|gb|ABM95227.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 313
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 112 DPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS-IPSAEEEDFNYRFNSIS 170
D +L + F+ D H + G T+L + D GKTW ++ IP DF Y + ++
Sbjct: 140 DEDALLTTLQFIDD--QHAVVTGEFGTVLTSADAGKTWVKQAPIPG----DF-YPYATVF 192
Query: 171 FKGKEGWIVGKPAILLHTSDAGESWE 196
GW G ++ HT+D G++W
Sbjct: 193 TDRSNGWTSGLGGVIWHTADGGKTWR 218
>gi|405363385|ref|ZP_11026339.1| hypothetical protein A176_2715 [Chondromyces apiculatus DSM 436]
gi|397089793|gb|EJJ20692.1| hypothetical protein A176_2715 [Myxococcus sp. (contaminant ex DSM
436)]
Length = 543
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 33/206 (16%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP-RSIPSAEEEDF 162
W V +P+ + + D+ ++ G+ + + + D G TW R P +
Sbjct: 143 WNHVALPLADALWVYDLERAA---GRTWICGSSRNIFRSDDAGATWIELRETPFSS---- 195
Query: 163 NYRFNSISFKGKE-GWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARR 221
N R +SF+ E GW G L T D G +W R+ S Q+P +P +R R
Sbjct: 196 NDRCVDMSFQDAERGWAAGVKGFLWATEDGGTTWRRLEPSGQMPE-----KPRSR---ER 247
Query: 222 IQNMG----WRADGGLW------LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGY 271
+ MG R + GL LVR L + G+G+ VP+ G D G+
Sbjct: 248 VAVMGDDTVVRVNRGLLSTYVSERLVRTSPL-TTAGSGVL-----VPLDGLGPRRQDTGF 301
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWI 297
+ ++W G ++ + + G +W
Sbjct: 302 GWKRDSWFGWKEGQIVLSHDQGLSWF 327
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 22/148 (14%)
Query: 183 AILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 242
A +L T+D G +W + LP A W + ++ RA G W+ +
Sbjct: 131 ANVLRTTDGGLTWNHV----ALPLADALW----------VYDLE-RAAGRTWICGSSRNI 175
Query: 243 FLSKGTGITE-EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKA 301
F S G T E E P S + D+ ++ + WAAG G L T +GG TW R +
Sbjct: 176 FRSDDAGATWIELRETPFSSNDRCV-DMSFQDAERGWAAGVKGFLWATEDGGTTWRRLEP 234
Query: 302 ADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ + S + + V+G+D V+
Sbjct: 235 SGQMPEKPRSRERVA-----VMGDDTVV 257
>gi|307726741|ref|YP_003909954.1| hypothetical protein BC1003_4733 [Burkholderia sp. CCGE1003]
gi|307587266|gb|ADN60663.1| hypothetical protein BC1003_4733 [Burkholderia sp. CCGE1003]
Length = 394
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
+G R ++ + DGGKTW+ P + ++SF E GWI G ++LH++D
Sbjct: 98 VGMRGLIVGSSDGGKTWSQAQAPVRSD------LLALSFPDAEHGWITGHDGVILHSADG 151
Query: 192 GESWER 197
G +W +
Sbjct: 152 GRTWNK 157
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 279 AAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G+++ +++GGKTW + +A + ++L ++ F + + G++ G+DGV+L
Sbjct: 97 AVGMRGLIVGSSDGGKTWSQAQAP--VRSDLLALSFPDAEHGWITGHDGVILH 147
>gi|288960827|ref|YP_003451167.1| hypothetical protein AZL_a10920 [Azospirillum sp. B510]
gi|288913135|dbj|BAI74623.1| hypothetical protein AZL_a10920 [Azospirillum sp. B510]
Length = 370
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 30/205 (14%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G L + D G+TW ++P + + F GW G +LL T DA
Sbjct: 64 VGEHGVALYSDDDGRTWRQSAVP------VSVTLTVVRFADATHGWAAGHNGVLLRTDDA 117
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK-GTGI 250
G SW+R+ L G R V R Q R G L L S+
Sbjct: 118 GASWQRV-----LDG---------RDVIRLYQQAADRIATGNSLSNERSQLAQSQAARLA 163
Query: 251 TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAAN 308
E+ P + LD+ S W AG +G+LL++ + G+ W D + +
Sbjct: 164 ARLAEDGPDKP----WLDLTVDSAGRLWLAGANGLLLRSED-GRQWEAWSSHLGDPVDRH 218
Query: 309 LYSVKFINEKKGFVLGNDGVLLQYL 333
LY+V+ E+ + G GVLL+ +
Sbjct: 219 LYAVQTRGEEI-VIAGEQGVLLRSI 242
>gi|383756979|ref|YP_005435964.1| hypothetical protein RGE_11240 [Rubrivivax gelatinosus IL144]
gi|381377648|dbj|BAL94465.1| hypothetical protein RGE_11240 [Rubrivivax gelatinosus IL144]
Length = 330
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 33/200 (16%)
Query: 136 RQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
R L ++DGG W E +I G+ G VG +L ++D G+SW
Sbjct: 64 RGQLYRSRDGGAHW------RRSAETGAGGITAIVMAGRRGLAVGHRGTVLASADGGDSW 117
Query: 196 ERIPLSSQLPGDM----AFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
+ P+++ P + A P NR +A W +D G G + +
Sbjct: 118 QARPIAT--PESLSLLDALVLPQNRLLAVGAFGACWASDDG--------GAHWAALKAVE 167
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYS 311
++ + I+ VG R G++L++ +GG++W A + A+L++
Sbjct: 168 DDRHLNACAATPAAIVVVGER-----------GLVLRSADGGRSWAETGGAAS--ASLFA 214
Query: 312 VKFINEKKGFVLGNDGVLLQ 331
V E++ G G LL
Sbjct: 215 VVATGEREFVAAGLGGTLLH 234
>gi|78059896|ref|YP_366471.1| glycosyl hydrolase [Burkholderia sp. 383]
gi|77964446|gb|ABB05827.1| Glycosyl hydrolase [Burkholderia sp. 383]
Length = 324
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS-- 153
K+ + WE + L + F+ D +HG +G +L T DGGKTW +
Sbjct: 112 KTTDGGETWEVQRLATTEDRPLFGVHFI--DADHGVAVGLWSLILVTDDGGKTWTKKEAV 169
Query: 154 IPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
+P+ ++ D N F S E + + L + D G +WE +
Sbjct: 170 LPNGKKSDLNL-FGLFSNSNGEIFATAEKGQLFISKDKGNTWENV 213
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + + VPV S + V + WA G G +LKTT+GG+TW
Sbjct: 66 GIILLSDNRGATYRQAKAVPVSST---LTSVSFIDARTGWAVGHWGAILKTTDGGETWEV 122
Query: 299 EKAADNIAANLYSVKFINEKKGFVLG 324
++ A L+ V FI+ G +G
Sbjct: 123 QRLATTEDRPLFGVHFIDADHGVAVG 148
>gi|389845164|ref|YP_006347244.1| photosystem II stability/assembly factor-like protein [Mesotoga
prima MesG1.Ag.4.2]
gi|387859910|gb|AFK08001.1| putative photosystem II stability/assembly factor-like protein
[Mesotoga prima MesG1.Ag.4.2]
Length = 350
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 242 LFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKA 301
L+ S +G T + + G + DV Q+ WA G G+LLKTTNGG W
Sbjct: 47 LYFSDDSGETWTRQAMDTLPEGKSLEDVLSVDQNRVWACGSDGLLLKTTNGGSDWEIVGV 106
Query: 302 ADNIAANLYSVKFINEKKGFVLGNDGVLL 330
++ + +S I E + +V G++G+++
Sbjct: 107 SEVATDSFFSFLSIFEDRIWVSGDEGLVI 135
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 18/204 (8%)
Query: 97 SEEALSAWERVYIPVDP-GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
S+++ W R + P G L D+ V D N + G+ LL+T +GG W +
Sbjct: 50 SDDSGETWTRQAMDTLPEGKSLEDVLSV--DQNRVWACGSDGLLLKTTNGGSDWEIVGVS 107
Query: 156 SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPH- 214
+ F F+ +S W+ G +++ + D G SW L ++ + H
Sbjct: 108 EVATDSF---FSFLSIFEDRIWVSGDEGLVIFSDDYGGSWTVCDLP-EMASEYIIQGIHA 163
Query: 215 -NRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
N V + N R G + S+ G T E E+P G + V
Sbjct: 164 INEDVIYAVGNKS---------TPRAGIVLKSEDGGQTWEEIELPNNYNDNGWIGVKATD 214
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWI 297
++ GG G + T NGGK W+
Sbjct: 215 ENHIVIHGGQGHYVVTANGGKQWV 238
>gi|167038254|ref|YP_001665832.1| hypothetical protein Teth39_1862 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116662|ref|YP_004186821.1| hypothetical protein Thebr_1911 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166857088|gb|ABY95496.1| hypothetical protein Teth39_1862 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929753|gb|ADV80438.1| hypothetical protein Thebr_1911 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 333
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNY----RFNSISFKGKEGWI-----VGKPAILLHTS 189
LL+T DGGKTW +I + D Y R N + GWI +G +L T+
Sbjct: 202 LLKTNDGGKTWENVNITGKKNYDGIYSAADRSNMKFYNKNNGWISISNNLGPAPLLFRTT 261
Query: 190 DAGESWERIPLS 201
D G+SW +I LS
Sbjct: 262 DGGKSWSKIELS 273
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 93 QPAKSEEALSAWERVYIPVD--PGVVLLDIA-----FVPDDLNHGFLLGTRQTLLETKDG 145
Q KS++ W ++YIPV+ P D F+ +++ +++ +L+TKDG
Sbjct: 98 QLYKSDDGGKTWTQIYIPVNKIPESAYKDAENIVPYFMDNNVWIAWIVPQTLHILKTKDG 157
Query: 146 GKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVG-------KPAILLHTSDAGESWER 197
G W I E + + + F +EGWI+ + LL T+D G++WE
Sbjct: 158 GLHW---DIFKFEIGKYGEAISVLQFVTPEEGWILTTMNGAGMQINYLLKTNDGGKTWEN 214
Query: 198 IPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
+ ++ + D + + +N GW
Sbjct: 215 VNITGKKNYDGIYSAADRSNMKFYNKNNGW 244
>gi|392953963|ref|ZP_10319515.1| hypothetical protein WQQ_35870 [Hydrocarboniphaga effusa AP103]
gi|391857862|gb|EIT68392.1| hypothetical protein WQQ_35870 [Hydrocarboniphaga effusa AP103]
Length = 286
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+++ PVD V L I F D +G+ +G +L T DGG TW + S E + ++
Sbjct: 37 WKQINSPVD--VALTSIRFA--DERNGWAVGHDAVILHTTDGGATW---KLQSREPDLYS 89
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNR------A 217
F+ + VG + T DAG +W + ++ + D + A
Sbjct: 90 PLFSIEVINSNQAIAVGAFGTIKQTQDAGATWTDV-MAPAISDDKLHLNAITKLNGGSFA 148
Query: 218 VARRIQNMGWRADGGLW 234
VA +GW ADG W
Sbjct: 149 VAGERGLLGWSADGVAW 165
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-K 174
+LLD+A NH +G ++L++ DG W + P + SI F +
Sbjct: 8 LLLDVAQAG---NHVIAIGGFGSILQSTDGAN-WKQINSP------VDVALTSIRFADER 57
Query: 175 EGWIVGKPAILLHTSDAGESWE 196
GW VG A++LHT+D G +W+
Sbjct: 58 NGWAVGHDAVILHTTDGGATWK 79
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 271 YRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+ + WA G V+L TT+GG TW + ++ + L+S++ IN + +G G +
Sbjct: 53 FADERNGWAVGHDAVILHTTDGGATWKLQSREPDLYSPLFSIEVINSNQAIAVGAFGTIK 112
Query: 331 Q 331
Q
Sbjct: 113 Q 113
>gi|313205107|ref|YP_004043764.1| hypothetical protein Palpr_2648 [Paludibacter propionicigenes WB4]
gi|312444423|gb|ADQ80779.1| hypothetical protein Palpr_2648 [Paludibacter propionicigenes WB4]
Length = 349
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 230 DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKT 289
+G ++ + G L+ + +G T V ++ G G S G V+LKT
Sbjct: 63 NGSIYKTINAGKLWTKQNSGTTLHLYSVFFINKNVGFASGGAMSGCLDEDCGKGSVVLKT 122
Query: 290 TNGGKTWIREKAADNIAANLYSVKFINEKKG 320
+NGG+TW + D N++S+KF NE KG
Sbjct: 123 SNGGETWTKLFFKD--YTNIFSLKFFNETKG 151
>gi|315126719|ref|YP_004068722.1| hypothetical protein PSM_A1644 [Pseudoalteromonas sp. SM9913]
gi|315015233|gb|ADT68571.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
Length = 331
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDFNYRFNSISFKG 173
V+L + F D +HG+ G T++ T DGG+ W ++ PS ++ + F
Sbjct: 73 VLLTAVEFTND--SHGWACGHDATIINTTDGGENWQLQQAKPSLDKPCLDIYFKD----D 126
Query: 174 KEGWIVGKPAILLHTSDAGESWERIPLSSQL 204
G+ VG + TSD GE W++ L S L
Sbjct: 127 LHGYAVGAYGMFYQTSDGGEHWQKRFLDSLL 157
>gi|326391568|ref|ZP_08213099.1| glycosyl hydrolase BNR repeat-containing protein
[Thermoanaerobacter ethanolicus JW 200]
gi|325992398|gb|EGD50859.1| glycosyl hydrolase BNR repeat-containing protein
[Thermoanaerobacter ethanolicus JW 200]
Length = 333
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNY----RFNSISFKGKEGWI-----VGKPAILLHTS 189
LL+T DGGKTW +I + D Y R N + GWI +G +L T+
Sbjct: 202 LLKTNDGGKTWENVNITGKKNYDGIYSAADRSNMKFYNKNNGWISISNNLGPAPLLFRTT 261
Query: 190 DAGESWERIPLS 201
D G+SW +I LS
Sbjct: 262 DGGKSWSKIELS 273
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 93 QPAKSEEALSAWERVYIPVD--PGVVLLDIA-----FVPDDLNHGFLLGTRQTLLETKDG 145
Q KS++ W ++YIPV+ P D F+ +++ +++ +L+TKDG
Sbjct: 98 QLYKSDDGGKTWTQIYIPVNKIPESAYKDAENIVPYFMDNNVWIAWIVPQTLHILKTKDG 157
Query: 146 GKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVG-------KPAILLHTSDAGESWER 197
G W I E + + + F +EGWI+ + LL T+D G++WE
Sbjct: 158 GLHW---DIFKFEIGKYGEAISVLQFVTPEEGWILTTMNGAGMQINYLLKTNDGGKTWEN 214
Query: 198 IPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
+ ++ + D + + +N GW
Sbjct: 215 VNITGKKNYDGIYSAADRSNMKFYNKNNGW 244
>gi|24374138|ref|NP_718181.1| BNR repeat protein [Shewanella oneidensis MR-1]
gi|24348638|gb|AAN55625.1|AE015701_2 BNR repeat protein [Shewanella oneidensis MR-1]
Length = 336
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 250 ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANL 309
+T+++++VP + + V + ++ WA G +L T +GG+TW + + I
Sbjct: 64 LTDKWQQVPTPT-SVQLTKVFFLNEKFGWAVGHDATILHTQDGGQTWSLQMQSTEIEKPF 122
Query: 310 YSVKFINEKKGFVLGNDGVL 329
V F+NE++G +G G+
Sbjct: 123 LDVLFLNEQEGMAIGAYGLF 142
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W++V P V L + F+ + G+ +G T+L T+DGG+TW+ + + E+ F
Sbjct: 68 WQQV--PTPTSVQLTKVFFLNEKF--GWAVGHDATILHTQDGGQTWSLQMQSTEIEKPF- 122
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
+ + +EG +G + T D G +W
Sbjct: 123 --LDVLFLNEQEGMAIGAYGLFYRTRDGGANW 152
>gi|89094891|ref|ZP_01167823.1| hypothetical protein MED92_17152 [Neptuniibacter caesariensis]
gi|89080848|gb|EAR60088.1| hypothetical protein MED92_17152 [Oceanospirillum sp. MED92]
Length = 360
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 29/205 (14%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G ++ + DGG +W +P + S+ F ++GW VG A++L T DA
Sbjct: 57 VGEHGLIIFSDDGGLSWNQADVPVSS------MLTSVHFFDNQKGWAVGHDAVILKTDDA 110
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G+SW ++ + L + A+ + + + L L +
Sbjct: 111 GKSWVKVTDGNALN------KIRMNAIENALTELAAKEPDNLDALEE-----------LE 153
Query: 252 EEFEEVPV---QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAAN 308
+F++ V + G +LD+ + + +A G G L ++ + G TW +
Sbjct: 154 YKFDDAAVALEEGAGTPLLDIHFLNGQIGFAIGAYGQLYRSDDQGLTWQYIGHQLPNPDS 213
Query: 309 LYSVKFINEKKG--FVLGNDGVLLQ 331
L+ F K G ++LG G+LL+
Sbjct: 214 LHFNAFFKAKNGDLYLLGEAGLLLK 238
>gi|398860638|ref|ZP_10616284.1| putative RND superfamily exporter [Pseudomonas sp. GM79]
gi|398234408|gb|EJN20283.1| putative RND superfamily exporter [Pseudomonas sp. GM79]
Length = 385
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G TW +P + ++ F ++GW VG ++LHT D
Sbjct: 39 VGERGIVLLSDDFGMTWRQARVP------VSVSLTAVQFVDAEQGWAVGHLGVVLHTEDG 92
Query: 192 GESWERIPLSSQLPGDMA 209
GE+W + QL G+ A
Sbjct: 93 GETWHK-----QLDGERA 105
>gi|421619449|ref|ZP_16060403.1| hypothetical protein B597_22330 [Pseudomonas stutzeri KOS6]
gi|409778480|gb|EKN58179.1| hypothetical protein B597_22330 [Pseudomonas stutzeri KOS6]
Length = 300
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 51/198 (25%)
Query: 146 GKTW-APRSIP-SAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQ 203
G++W RS+P S D ++ S +GW VG ++LH++D GESW R Q
Sbjct: 3 GRSWRQARSVPVSVALTDVHFASTS------QGWAVGHSGVVLHSADGGESWVR-----Q 51
Query: 204 LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG 263
L G A AV R + RAD G EE E ++S
Sbjct: 52 LDGGQA-------AVIIR-DDAKRRADTG-------------------EEGAEAALRSAE 84
Query: 264 FGILD--------VGYRSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANLYSVK 313
F + D V + + + G G+ L T +GG++W + + A+ +LY V+
Sbjct: 85 FLVSDGPDKPFLGVRFANAQRGYVVGAYGIALYTLDGGQSWHSLVGQIANPRGKHLYQVQ 144
Query: 314 FINEKKGFVLGNDGVLLQ 331
I+ + G G L +
Sbjct: 145 -IDGDALLIAGEQGALFR 161
>gi|56476756|ref|YP_158345.1| hypothetical protein c1A92 [Aromatoleum aromaticum EbN1]
gi|56312799|emb|CAI07444.1| hypothetical protein c1A92 [Aromatoleum aromaticum EbN1]
Length = 325
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 89 GLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKT 148
G + A S + + W+ + D + +L + + G LG + T+DGG +
Sbjct: 147 GSHATIAMSSDRGATWQVTDLAADAQITVLAMT----EGQSGIALGEFGIVARTEDGGAS 202
Query: 149 WAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLP 205
W + P A DF Y + ++ +G++ G +L T DAG +W +I ++Q P
Sbjct: 203 WT-KGAPIAN--DF-YPYAAVFTNRNDGYVSGIAGTILRTQDAGVTWSKIENATQAP 255
>gi|326316529|ref|YP_004234201.1| hypothetical protein Acav_1716 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323373365|gb|ADX45634.1| hypothetical protein Acav_1716 [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 334
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNS 168
+PVD V L +AF D LN G+ G +L T DGG+TW ++ + ++ F
Sbjct: 85 VPVD--VTLTSVAFA-DALN-GWAAGHAGVILHTADGGETW---TLQRKDLQEDRPLFAV 137
Query: 169 ISFKGKEGWIVGKPAILLHTSDAGESWERIPLS 201
F G VG +++L T D G +W ++ L+
Sbjct: 138 HFFDAAHGVAVGLWSLVLTTDDGGATWRKVDLA 170
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 240 GGLFLSKGTGITE-EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + VPV + V + WAAG +GV+L T +GG+TW
Sbjct: 67 GVVLLSDDGGRTHRQARSVPVD---VTLTSVAFADALNGWAAGHAGVILHTADGGETWTL 123
Query: 299 EKAADNIAANLYSVKFINEKKGFVLG 324
++ L++V F + G +G
Sbjct: 124 QRKDLQEDRPLFAVHFFDAAHGVAVG 149
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 133 LGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISFKGK-EGWIVGKPAILLHTSD 190
+G +L + DGG+T RS+P + S++F GW G ++LHT+D
Sbjct: 63 VGDHGVVLLSDDGGRTHRQARSVP------VDVTLTSVAFADALNGWAAGHAGVILHTAD 116
Query: 191 AGESW 195
GE+W
Sbjct: 117 GGETW 121
>gi|78062296|ref|YP_372204.1| glycosyl hydrolase [Burkholderia sp. 383]
gi|77970181|gb|ABB11560.1| Glycosyl hydrolase [Burkholderia sp. 383]
Length = 323
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 120/301 (39%), Gaps = 45/301 (14%)
Query: 1 MGSSLRLSEPMMLVKPSLSSLFAPRLNRTNAQAQQPRFISTS-RACSLPSSDSSSS---S 56
+G++L P L ++++ A RL R ++ R L S D+ + +
Sbjct: 15 LGAALFAFSPRPLPAFPVTAIHADRLQINGLARAGARIVAVGERGVILLSDDAGAHWRPA 74
Query: 57 SSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVV 116
S++ +S+L + +F++ T L G + +S++A W V++ +
Sbjct: 75 STTPDQASTLTQVRFITPT--------LGIAVGHDGRIVRSDDAGMHWREVHMDHEHSDP 126
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LL + D F G+ LL + D G W P+ + N+I G
Sbjct: 127 LLSVWGTAD--GPLFAAGSFGQLLRSDDAGLNWQTVKTPAGDRH-----LNAIVGDGHGN 179
Query: 177 WIV-GKPAILLHTSDAGESWERIP------------------LSSQLPGDM-------AF 210
+V G+ LL ++D G +W+++P ++ + G++ A
Sbjct: 180 LLVAGESGTLLRSTDNGATWDKLPSPYAGSLFGALMLANGDWVAYGMRGNVVRSTDRGAT 239
Query: 211 WQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVG 270
W + V ADG L L+ +GG + S+ G+T + ++ +LD+G
Sbjct: 240 WTHVDSHVPVSYFGATQLADGELVLVGQGGAIVASRDGGLTFDVRKLGGVQSLAAVLDMG 299
Query: 271 Y 271
+
Sbjct: 300 H 300
>gi|388545801|ref|ZP_10149081.1| glycosyl hydrolase [Pseudomonas sp. M47T1]
gi|388276212|gb|EIK95794.1| glycosyl hydrolase [Pseudomonas sp. M47T1]
Length = 354
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 49/208 (23%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDF-NYRFNSISFKGKEGWIVGKPAILLHTSDA 191
+G R ++ + D GK W R +P D +F S S +GW+VG+ ++LH+ D
Sbjct: 57 VGLRGLIVLSDDQGKNW--RQVPVPVSSDLLAVQFVSPS----KGWVVGQDGVVLHSDDG 110
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
GE W R Q G+ A + Q L++ G +
Sbjct: 111 GEHWLR-----QFEGNAA-----HAVAVAHFQG-----------LIKAGEPTAEQALNDV 149
Query: 252 E-EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW------------IR 298
E + P Q+ +LD+ + + + G G L T +GG TW +
Sbjct: 150 ELNYANGPEQA----LLDLWFEDEQHGFVVGSFGTLFATDDGGATWQCWMDRVEAPELLH 205
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGND 326
A I A +Y I ++GFV D
Sbjct: 206 LNAIRGIGATVY----IASEQGFVFKLD 229
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 41/145 (28%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW------- 149
+E+AL+ E Y P LLD+ F +D HGF++G+ TL T DGG TW
Sbjct: 142 AEQALNDVELNYAN-GPEQALLDLWF--EDEQHGFVVGSFGTLFATDDGGATWQCWMDRV 198
Query: 150 -APR------------SIPSAEEEDFNYR------------------FNSISFKGKEGWI 178
AP ++ A E+ F ++ F S++ G
Sbjct: 199 EAPELLHLNAIRGIGATVYIASEQGFVFKLDRQQQRFMAHETGYPGSFFSLAGFGNTVVA 258
Query: 179 VGKPAILLHTSDAGESWERIPLSSQ 203
G H+ D G+SW+++ +Q
Sbjct: 259 FGLLGNAWHSVDGGDSWKKVETGTQ 283
>gi|395797922|ref|ZP_10477209.1| hypothetical protein A462_21669 [Pseudomonas sp. Ag1]
gi|395337914|gb|EJF69768.1| hypothetical protein A462_21669 [Pseudomonas sp. Ag1]
Length = 315
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 33/142 (23%)
Query: 166 FNSISF-KGKEGWIVGKPAILLHTSDAGESWER------IPLSSQLPGDMAFWQPHNRA- 217
S+ F + GW VG ++L++SDAG +W I +L + + H
Sbjct: 28 LTSVYFVDARNGWAVGHDGVILNSSDAGATWTTQSDGAAIGKLMKLSAEQRIARLHAETP 87
Query: 218 ---VARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQ 274
V R + N + D + + P + +LD+ +R+
Sbjct: 88 SDDVNRALDNANFMLDD------------------VNAGLQSGPSRP----LLDIWFRNA 125
Query: 275 DEAWAAGGSGVLLKTTNGGKTW 296
DE WA G G +L T +GGK W
Sbjct: 126 DEGWAVGAYGTVLHTVDGGKQW 147
>gi|399003828|ref|ZP_10706478.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM18]
gi|398121761|gb|EJM11380.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM18]
Length = 366
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
A R + P LD+ F D HG+++G + T DGG++W P +
Sbjct: 154 AQARQMLDDGPDKPFLDLYF--SDRLHGYVVGAYNQIYRTDDGGRSWQPWMQHVDNPQGL 211
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
N I G + +VG+ +LL ++DAG S++ +
Sbjct: 212 N--LYGIRASGNDLLLVGERGLLLRSTDAGHSFQAL 245
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G W S+P + ++ F ++GW VG ++LHT D
Sbjct: 66 VGERGIVLLSDDAGIHWRQASVP------VSVSLTAVQFVDAEQGWAVGHLGVVLHTEDG 119
Query: 192 GESWER 197
GE+W +
Sbjct: 120 GETWRK 125
>gi|383459054|ref|YP_005373043.1| oxidoreductase [Corallococcus coralloides DSM 2259]
gi|380731321|gb|AFE07323.1| oxidoreductase [Corallococcus coralloides DSM 2259]
Length = 352
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 83/210 (39%), Gaps = 31/210 (14%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV----GKPAILLHTS 189
G + T++ T DGGKTW +P AE DF + +F + +++ G + + T+
Sbjct: 47 GDKGTVVRTTDGGKTWTRAPVPDAEGLDFR---DVDAFSDRTAYVLSIGAGDKSRIYKTT 103
Query: 190 DAGESWERIPLSSQLPG----DMAFW-QPHNRA----VARRIQNMGWRADGGLWLLVRGG 240
D G W + ++ +PG MAFW + H A V R + G W V G
Sbjct: 104 DGGAHWT-LQFTNTMPGAFFNGMAFWDEQHGIAFSDPVDRHFVVITTEDGGATWKPVPQG 162
Query: 241 GL--FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW-- 296
L L G + V + +G G +L + +GGKTW
Sbjct: 163 ALPAALEGEAGFAASGTSIAVYGKSHVWFGLG----------GSIARVLHSADGGKTWGI 212
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGND 326
A A ++S+ F + G +G +
Sbjct: 213 APTPLATGEGAGVFSLYFWSPMAGVAVGGN 242
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 277 AWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
AWA+G G +++TT+GGKTW R D + V +++ +VL
Sbjct: 43 AWASGDKGTVVRTTDGGKTWTRAPVPDAEGLDFRDVDAFSDRTAYVL 89
>gi|261406300|ref|YP_003242541.1| hypothetical protein GYMC10_2456 [Paenibacillus sp. Y412MC10]
gi|261282763|gb|ACX64734.1| hypothetical protein GYMC10_2456 [Paenibacillus sp. Y412MC10]
Length = 432
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 22/101 (21%)
Query: 119 DIAFVPDDLNHGFLLGTRQ-----TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-K 172
DI F D NHG+++ +Q LL T DGG +W S+P ++SF
Sbjct: 130 DIVFT--DKNHGWIIRNKQRSAETILLNTTDGGGSWKLSSLPETG------VVTAMSFVS 181
Query: 173 GKEGWIVGKPAI--------LLHTSDAGESWERIPLSSQLP 205
++GWI+ K + L HTS+ G W+ I +++ P
Sbjct: 182 SQQGWIMAKGDLSRGSEEKSLFHTSNNGGVWDEIMQNTEYP 222
>gi|358638028|dbj|BAL25325.1| BNR repeat-containing glycosyl hydrolase [Azoarcus sp. KH32C]
Length = 322
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 111 VDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS 170
VD VLL + F D G++ G T + T DGG++W P + S + D + N I
Sbjct: 123 VDGNPVLLSVFF--SDAQRGYVTGAYGTAMLTTDGGQSWRPMKVGSGHDGDLH--LNQI- 177
Query: 171 FKGKEG--WIVGKPAILLHTSDAGESWERI 198
F ++G +I + ++D GE+W ++
Sbjct: 178 FGTRDGKLFIAAESGGAFRSTDRGETWTKL 207
Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 82 ISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLE 141
+++AAT+ QP A++A +PV GVV A V +G T++
Sbjct: 21 LAMAATSEASRQPT---PAMTARLAAKVPV-TGVVRAGNALVA--------VGDYGTVVR 68
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
+ D GKTW ++P + Y + GW VG I+L +SD G +W+ +
Sbjct: 69 STDDGKTWKQAAVPVSTLLTAVYFVDD-----THGWAVGHGGIVLASSDGGANWQSL 120
>gi|373949772|ref|ZP_09609733.1| BNR repeat-containing protein [Shewanella baltica OS183]
gi|386324395|ref|YP_006020512.1| BNR repeat-containing protein [Shewanella baltica BA175]
gi|333818540|gb|AEG11206.1| BNR repeat-containing protein [Shewanella baltica BA175]
gi|373886372|gb|EHQ15264.1| BNR repeat-containing protein [Shewanella baltica OS183]
Length = 338
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 258 PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE 317
PV S+ + V + + WA G +L T +GG+TW ++ + I V F++E
Sbjct: 76 PVSSQ---LTKVFFLNDKLGWAVGHDATILHTQDGGQTWQQQMHSPEIEKPFLDVVFLDE 132
Query: 318 KKGFVLGNDGVL 329
KGF +G G+
Sbjct: 133 NKGFAIGAYGLF 144
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
+W +V PV L + F+ D L G+ +G T+L T+DGG+TW + E+ F
Sbjct: 69 SWHQVATPVSSQ--LTKVFFLNDKL--GWAVGHDATILHTQDGGQTWQQQMHSPEIEKPF 124
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
+ + +G+ +G + T+D G W
Sbjct: 125 ---LDVVFLDENKGFAIGAYGLFYRTNDGGAHW 154
>gi|329922333|ref|ZP_08278010.1| BNR/Asp-box repeat protein [Paenibacillus sp. HGF5]
gi|328942196|gb|EGG38467.1| BNR/Asp-box repeat protein [Paenibacillus sp. HGF5]
Length = 432
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 22/101 (21%)
Query: 119 DIAFVPDDLNHGFLLGTRQ-----TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-K 172
DI F D NHG+++ +Q LL T DGG +W S+P ++SF
Sbjct: 130 DIVFT--DKNHGWIIRNKQRSAETILLNTTDGGASWKLSSLPETG------VVTAMSFVS 181
Query: 173 GKEGWIVGKPAI--------LLHTSDAGESWERIPLSSQLP 205
++GWI+ K + L HTS+ G W+ I +++ P
Sbjct: 182 SQQGWIMAKGDLSRGSEEKSLFHTSNNGGLWDEIMQNTEYP 222
>gi|126174655|ref|YP_001050804.1| BNR repeat-containing protein [Shewanella baltica OS155]
gi|386341412|ref|YP_006037778.1| BNR repeat-containing protein [Shewanella baltica OS117]
gi|125997860|gb|ABN61935.1| BNR repeat protein [Shewanella baltica OS155]
gi|334863813|gb|AEH14284.1| BNR repeat-containing protein [Shewanella baltica OS117]
Length = 338
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 258 PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE 317
PV S+ + V + + WA G +L T +GG+TW ++ + I V F++E
Sbjct: 76 PVSSQ---LTKVFFLNDKLGWAVGHDATILHTQDGGQTWQQQMHSPEIEKPFLDVVFLDE 132
Query: 318 KKGFVLGNDGVL 329
KGF +G G+
Sbjct: 133 NKGFAIGAYGLF 144
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
+W +V PV L + F+ D L G+ +G T+L T+DGG+TW + E+ F
Sbjct: 69 SWHQVATPVSSQ--LTKVFFLNDKL--GWAVGHDATILHTQDGGQTWQQQMHSPEIEKPF 124
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
+ + +G+ +G + T+D G W
Sbjct: 125 ---LDVVFLDENKGFAIGAYGLFYRTNDGGSHW 154
>gi|56460481|ref|YP_155762.1| BNR/Asp-box repeat-containing protein [Idiomarina loihiensis L2TR]
gi|56179491|gb|AAV82213.1| BNR/Asp-box repeat protein [Idiomarina loihiensis L2TR]
Length = 390
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G T L+T+DGG++W + I E Y N+I +G + +IVG+ + + D G
Sbjct: 199 IGAYGTFLKTEDGGESW--QVISGRLENPGGYHLNTIFGRGDDLYIVGEAGLAFASYDGG 256
Query: 193 ESWERI 198
E+WE +
Sbjct: 257 ENWETL 262
>gi|397696536|ref|YP_006534419.1| BNR domain-containing protein [Pseudomonas putida DOT-T1E]
gi|397333266|gb|AFO49625.1| BNR domain-containing protein [Pseudomonas putida DOT-T1E]
Length = 353
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 97/252 (38%), Gaps = 44/252 (17%)
Query: 84 LAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETK 143
LAA GL A + A ++ P VL D+A L +G R +L +
Sbjct: 10 LAACCGLPPAFAGDSVDVLAQPALHGPQALRAVLQDVARADARL---VAVGERGVVLLSD 66
Query: 144 DGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPLS 201
D G TW ++P ++ F + GW VG ++LH+ D GE W S
Sbjct: 67 DNGATWRQATAVP------VGVSLTAVQFIDARNGWAVGHAGVVLHSQDGGEHW-----S 115
Query: 202 SQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQS 261
QL G RA A +Q +D L+ + + + P
Sbjct: 116 VQLDG--------KRAAALEVQAAEAASD----------ERRLAAAQRLLADGADKP--- 154
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIRE--KAADNIAANLYSVKFINEKK 319
+L + + G GV ++T +GG++W E + + +LY++ +
Sbjct: 155 ----LLALNFTDARNGLVVGAYGVAMRTADGGRSWQSEIGRLPNGRGLHLYALARQGNQV 210
Query: 320 GFVLGNDGVLLQ 331
++ G G+LL+
Sbjct: 211 -YIAGEQGLLLR 221
>gi|168704232|ref|ZP_02736509.1| hypothetical protein GobsU_32149 [Gemmata obscuriglobus UQM 2246]
Length = 1062
Score = 42.4 bits (98), Expect = 0.29, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 226 GWRA--DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILD--VGYRSQDEAWAAG 281
GW DG +W V GG + + TG RG ++ G+ +G
Sbjct: 44 GWACGDDGAVWHTVDGGKQWERQKTGTRASL-------RGLHFVNPYTGWAVGRVDTPSG 96
Query: 282 GSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
GVLLKTT+GG W + N+ L +++F++EK G V G+
Sbjct: 97 SVGVLLKTTDGGLGW--AEVGTNVMPGLNAIRFVDEKLGMVCGD 138
Score = 38.9 bits (89), Expect = 3.7, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 233 LWLLVRGGGLFL-SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTN 291
+W+ R GG L S G T E ++ + GI + S+ E W G G +L T +
Sbjct: 278 VWVAGRPGGFVLHSADLGKTWEVQKTELTVPANGI---HFVSEKEGWIVGDLGCVLGTID 334
Query: 292 GGKTWIREKAADNIAANLY 310
GGKTW ++ AA L+
Sbjct: 335 GGKTWKTQRLGGQRAATLF 353
Score = 38.9 bits (89), Expect = 3.8, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 265 GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
G+ V + E WA G G + T +GGK W R+K A+L + F+N G+ +G
Sbjct: 32 GLHAVQFVDASEGWACGDDGAVWHTVDGGKQWERQKTGTR--ASLRGLHFVNPYTGWAVG 89
>gi|398905454|ref|ZP_10652848.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM50]
gi|398174424|gb|EJM62219.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM50]
Length = 367
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 92 EQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP 151
+QP + A R + P LD+ F D HG+++G + T DGG+ W P
Sbjct: 146 DQPGGASNLAQA--RQMLDDGPDKPFLDLYF--SDRLHGYIVGAYNQIYRTDDGGRNWRP 201
Query: 152 RSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
+ N +I G + +VG+ +LL ++DAG S++ +
Sbjct: 202 WMQHVDNPQGLN--LYAIRASGNDLLLVGERGLLLRSTDAGHSFKAL 246
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 23/118 (19%)
Query: 82 ISLAATTGLYEQPA-KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLL 140
++ AAT + +QPA + +A A VLL +A + L +G R +L
Sbjct: 30 VAQAATFAVLQQPALPTAKAARA------------VLLGLARAGERL---VAVGERGIVL 74
Query: 141 ETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWER 197
+ D G +W +P + ++ F ++GW VG ++LHT D GE+W +
Sbjct: 75 LSDDSGMSWRQARVP------VSVSLTAVQFVDAEQGWAVGHLGVVLHTEDGGETWHK 126
>gi|126667897|ref|ZP_01738862.1| hypothetical protein MELB17_08126 [Marinobacter sp. ELB17]
gi|126627557|gb|EAZ98189.1| hypothetical protein MELB17_08126 [Marinobacter sp. ELB17]
Length = 394
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA--PRSIPSAEEEDFNYRFN 167
PV+P LD+ F +D +HGF++G + T DGG W R + + ++ Y N
Sbjct: 187 PVNP---FLDVWF--EDASHGFVIGAYGMIFHTADGGNQWQDWARKLDNGDK----YHLN 237
Query: 168 SISFKGKEGWIVGKPAILLHTS-DAGESWER 197
+I+ ++ A +H S D G +W+R
Sbjct: 238 AITKIAGGALVIAGEAGQIHVSEDNGITWDR 268
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 20/126 (15%)
Query: 72 VSQTATLSLSISLA-ATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHG 130
+S A L+ S A A L E PA+S E + V LL+ D
Sbjct: 19 ISLAALCVLTPSTAFAVADLLETPARSTELAT------------VSLLNDVARAGDSERL 66
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTS 189
+G R ++ + DGG W S+P + + F GW VG +LH+S
Sbjct: 67 VAVGERGHIIYSDDGGAKWTQASVP------VSVTLTGVDFGSASHGWAVGHSGAVLHSS 120
Query: 190 DAGESW 195
D+G +W
Sbjct: 121 DSGSNW 126
>gi|256823205|ref|YP_003147168.1| hypothetical protein Kkor_1990 [Kangiella koreensis DSM 16069]
gi|256796744|gb|ACV27400.1| conserved hypothetical protein [Kangiella koreensis DSM 16069]
Length = 335
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S+++ W +V +P + +D F+ D HG +G QT+L T DGG++W S
Sbjct: 63 SDDSGVEWRQVPVPTREPLTAVD--FLDD--KHGIAVGFSQTVLLTNDGGESWQ----LS 114
Query: 157 AEEEDFNY-RFNSISFKGKEGWI-VGKPAILLHTSDAGESWE 196
+EE + + F ++ + VG + L ++DAGESWE
Sbjct: 115 HQEESYEQPALFDVQFITEDLIVAVGSYGLYLESADAGESWE 156
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 47/231 (20%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG--K 174
L D+ F+ +DL +G+ LE+ D G++W PR I + + Y + SFK +
Sbjct: 125 LFDVQFITEDLI--VAVGSYGLYLESADAGESWEPREIEGLADY-YGYFSHFYSFKKVTE 181
Query: 175 EGWIVG---------------KPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVA 219
+ W++ A++ T D GE+W+++ P D +F+
Sbjct: 182 DYWVIAGEKYIDSIDDDGFETSSALVAETRDGGETWQKLA----TPYDGSFF-------- 229
Query: 220 RRIQNMGWRAD--GGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEA 277
G + D G L++ G L++SK G + + + + S G D+ D
Sbjct: 230 ------GVQLDDAGNLYVYGLRGNLYISKDQGQSWQGQFLSTAS---GFHDMAIIDTDRW 280
Query: 278 WAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
G GVL+ T + + A V F++E ++G GV
Sbjct: 281 VLVGTGGVLVYKTLTSTDIKKRRDLKGRTA----VVFVDEDTLIIVGEGGV 327
>gi|124008292|ref|ZP_01692988.1| glycosyl hydrolase, BNR repeat, putative [Microscilla marina ATCC
23134]
gi|123986241|gb|EAY26070.1| glycosyl hydrolase, BNR repeat, putative [Microscilla marina ATCC
23134]
Length = 345
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 91/227 (40%), Gaps = 38/227 (16%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE- 175
L I+F PD+ HG++ G + +T DGG TW S N I F +
Sbjct: 52 LRSISF-PDE-RHGYIAGDGGVIFKTTDGGITWQDISRSDVTP------INKIIFTSAQV 103
Query: 176 GWIVGKPAILLHTSDAGESWERI-PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
G+I K LL T+D G SW + P S L D+ F A+ + + D G
Sbjct: 104 GFIALKQKALLKTTDGGNSWIEVEPFSGNLR-DIRFVGNTGYAIINGVDRNTNQEDEGCA 162
Query: 235 LL-VRGGGLFLSKGTGITEEFEEVPVQSRGFGILD---VGYRSQDEAWAAGGSGVLLKTT 290
LL GG S G+++ G ++D V + S+DE V+ +T
Sbjct: 163 LLKSTDGGDSWSHMLGVSKP-------CWGMSVVDADKVYFVSEDE--------VVFRTL 207
Query: 291 NGGKT---WIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
+GG T W K N Y+ ++ K + D +L Y G
Sbjct: 208 DGGNTLEPWNDRKVGYN-----YNAIYVFGDKSYYTVGDLAILNYYG 249
>gi|392951379|ref|ZP_10316934.1| hypothetical protein WQQ_10060 [Hydrocarboniphaga effusa AP103]
gi|391860341|gb|EIT70869.1| hypothetical protein WQQ_10060 [Hydrocarboniphaga effusa AP103]
Length = 341
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 21/142 (14%)
Query: 73 SQTATLSLSIS---LAATTGLYEQPAKSEEALSAWERVYI--------PVDPGVVLLDIA 121
S+ L++S++ LAA+ G + SE ++W+ V + PVDP L D+A
Sbjct: 140 SEQRLLAVSVNQAGLAASVGSFGAILVSENGGASWQPVVVDWTRYLEEPVDPH--LYDVA 197
Query: 122 FVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGK 181
D + G +L + D GKTW A D R + + G+ VG+
Sbjct: 198 V--SDGGVITIAGEYGLILRSADHGKTWVSVHRGEASIFDIAMRPDGV------GYAVGQ 249
Query: 182 PAILLHTSDAGESWERIPLSSQ 203
+++ +SD G +W +P S+
Sbjct: 250 NGLVMTSSDGGNTWRDLPTGSE 271
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 39/222 (17%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
L +AF D + G +G LLE+ DGGK+W + + + +G
Sbjct: 64 LFSVAF---DGDRGVAVGAMGELLESSDGGKSW-----KATAKGITPLSLLGVGLQGAHR 115
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
VG+ ++L S+ +W ++ S+ R +A + G A G +
Sbjct: 116 IAVGQQGLILR-SEGDAAWSKVESGSE-----------QRLLAVSVNQAGLAASVGSF-- 161
Query: 237 VRGGGLFLSKGTGIT--------EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLK 288
G + +S+ G + + E PV + DV AG G++L+
Sbjct: 162 ---GAILVSENGGASWQPVVVDWTRYLEEPVDPH---LYDVAVSDGGVITIAGEYGLILR 215
Query: 289 TTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+ + GKTW+ + A+++ + + G+ +G +G+++
Sbjct: 216 SADHGKTWVSVHRGE---ASIFDIAMRPDGVGYAVGQNGLVM 254
>gi|221135245|ref|ZP_03561548.1| BNR repeat-containing protein [Glaciecola sp. HTCC2999]
Length = 335
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 27/130 (20%)
Query: 95 AKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA---- 150
S ++ + WE Y ++ L+D+ F D +G + G + + T DGGKTW
Sbjct: 92 VHSSDSGATWEVQYQDIEKEHPLMDVHFF--DAQNGIVAGAYGSFMRTSDGGKTWTTELH 149
Query: 151 -----PRSIPSAEE------EDFNYR---------FNSISFKGKEGWIVGKPAILLHTSD 190
P I EE E+F Y+ FN + ++ G+ +L + +
Sbjct: 150 STLLHPDDIEYLEEVREFDGEEF-YKQELESILPHFNRLYVFDNTVYMAGESGMLAKSIN 208
Query: 191 AGESWERIPL 200
G SWERI +
Sbjct: 209 EGRSWERIDI 218
>gi|42517090|dbj|BAD11010.1| hypothetical protein [Pseudomonas fluorescens]
Length = 360
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G +W +P + ++ F +EGW VG ++LH++D
Sbjct: 63 VGERGIVLLSDDSGVSWRQAKVP------VSVSLTAVRFVDAQEGWAVGHMGVILHSTDG 116
Query: 192 GESWER 197
GESW +
Sbjct: 117 GESWTK 122
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 99 EALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAE 158
+AL ER+ + P LD+ F D G+ +G +L T+DGG W P
Sbjct: 144 KALKDAERL-VADGPDKPFLDLYF--SDRRTGYAVGAYGLILHTRDGGSHWQPWMRQVEN 200
Query: 159 EEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
ED N I G +IVG+ +LL + D G S++ +
Sbjct: 201 PEDLN--LYGIRAAGSALFIVGERGLLLRSQDNGHSFQAL 238
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 44/196 (22%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA------ 150
S+++ +W + +PV V L + FV D G+ +G +L + DGG++W
Sbjct: 72 SDDSGVSWRQAKVPVS--VSLTAVRFV--DAQEGWAVGHMGVILHSTDGGESWTKQLDGV 127
Query: 151 ---------------PRSIPSAEE---EDFNYRFNSISFKGKE-GWIVGKPAILLHTSDA 191
P+++ AE + + F + F + G+ VG ++LHT D
Sbjct: 128 AAAQLALAQAREGDDPKALKDAERLVADGPDKPFLDLYFSDRRTGYAVGAYGLILHTRDG 187
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL-SKGTGI 250
G W+ + P D+ + G RA G +V GL L S+ G
Sbjct: 188 GSHWQPWMRQVENPEDLNLY--------------GIRAAGSALFIVGERGLLLRSQDNGH 233
Query: 251 TEEFEEVPVQSRGFGI 266
+ + E P + FG+
Sbjct: 234 SFQALESPYEGSFFGL 249
>gi|157961763|ref|YP_001501797.1| BNR repeat-containing protein [Shewanella pealeana ATCC 700345]
gi|157846763|gb|ABV87262.1| BNR repeat protein [Shewanella pealeana ATCC 700345]
Length = 338
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 102 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED 161
++W++V P +L + F+ D+ G+ +G T+L T+DGG+TW S+ EE
Sbjct: 67 NSWKQVNTPTQA--LLTKLFFIAPDI--GWAVGHDATILHTRDGGQTW---SVQMQSEEI 119
Query: 162 FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
+ + F + G VG + T D G++W
Sbjct: 120 EKPLLDILFFTPQHGVAVGAYGLFYRTYDGGKTW 153
>gi|221233471|ref|YP_002515907.1| hypothetical protein CCNA_00534 [Caulobacter crescentus NA1000]
gi|220962643|gb|ACL93999.1| conserved hypothetical protein [Caulobacter crescentus NA1000]
Length = 362
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 28/163 (17%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPA----ILLHT 188
G L T+DGG++WA R + + E F ++S++F K G+I+G P +L T
Sbjct: 122 GEASQLWRTRDGGQSWA-RIAANQDPEGF---WDSLTFVDDKRGYILGDPTQGRFTVLFT 177
Query: 189 SDAGESWER-----IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW----LLVRG 239
DAGE+W R +PL++ P + AF N VA + GG L RG
Sbjct: 178 DDAGETWTRLDPKGVPLAA--PNEGAF-AASNGCVAIGPRGQVAFCTGGAGKARVYLSRG 234
Query: 240 GGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG 282
GG F++ T I + P + G V + W GG
Sbjct: 235 GGAFVALETPI---LADAPSK----GAFAVTFAGDGTLWVCGG 270
>gi|339627189|ref|YP_004718832.1| hypothetical protein TPY_0899 [Sulfobacillus acidophilus TPY]
gi|379008430|ref|YP_005257881.1| hypothetical protein [Sulfobacillus acidophilus DSM 10332]
gi|339284978|gb|AEJ39089.1| hypothetical protein TPY_0899 [Sulfobacillus acidophilus TPY]
gi|361054692|gb|AEW06209.1| hypothetical protein Sulac_2747 [Sulfobacillus acidophilus DSM
10332]
Length = 628
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 36/167 (21%)
Query: 137 QTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWE 196
Q L+ T++GG+ W E Y + +EG+ VG A HT + G +W
Sbjct: 483 QWLMATRNGGRHWI-------RVETVPYLTTLVMINSREGYGVGFSA-WYHTDNGGMTWT 534
Query: 197 RIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWL-LVRGGG---LFLSKGTGITE 252
R PL L + + W +G LW+ R G + +++G +T
Sbjct: 535 RYPLPPNL----------------FVSALAWNPNGSLWMAATRSQGSPVILIARGHTLT- 577
Query: 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIRE 299
VP G G ++ + WA G L T +GG+ WI +
Sbjct: 578 -ITPVPRVITGLGFVN-----RQNGWAVTDRG-LYVTPDGGRRWIFQ 617
>gi|322434596|ref|YP_004216808.1| glycosyl hydrolase [Granulicella tundricola MP5ACTX9]
gi|321162323|gb|ADW68028.1| glycosyl hydrolase [Granulicella tundricola MP5ACTX9]
Length = 359
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 21/108 (19%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV----------GKPA 183
GT T+L T+DGG W P +IP+ E+ + F+G +G+ G +
Sbjct: 46 GTNGTILRTEDGGYLWQPCTIPTGAEK--------LDFRGIQGFDANTAVAMASGPGTAS 97
Query: 184 ILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADG 231
+ T+D ++W+R+ + G F+ ++ ++++ MG + DG
Sbjct: 98 AVYKTTDGCQTWKRVFTNPDAKG---FFDNIHKVTSKQMYMMGDQVDG 142
>gi|339323983|ref|YP_004682876.1| hypothetical protein CNE_BB2p02170 [Cupriavidus necator N-1]
gi|338171976|gb|AEI83028.1| hypothetical protein CNE_BB2p02170 [Cupriavidus necator N-1]
Length = 373
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 74 QTATLSLSIS-LAATTGL----YEQPAKSEEALSAWERVYIP--VDPGVVLLDIAFVPDD 126
+T +L+L I+ +A T G+ PA++ ER + + P ++L + +
Sbjct: 2 RTRSLALCIAAVACTVGMGLSGATAPARAGGPADVLERQALRSVLAPASLMLAVTRAGER 61
Query: 127 LNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGK-EGWIVGKPAIL 185
L G R +L + D G++W +P + S+ F + +GW VG ++
Sbjct: 62 L---VAAGERGIVLLSDDNGRSWRQAGVP------VSVTLTSVFFASRTQGWAVGHGGVI 112
Query: 186 LHTSDAGESWER 197
LH+ D GE+W +
Sbjct: 113 LHSDDGGETWSK 124
>gi|385332348|ref|YP_005886299.1| BNR repeat glycosyl hydrolase-like protein [Marinobacter adhaerens
HP15]
gi|311695498|gb|ADP98371.1| BNR repeat glycosyl hydrolase-like protein [Marinobacter adhaerens
HP15]
Length = 325
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
+S+ + W+ + I D V L DIA + ++ TL ++D G++W
Sbjct: 149 RSDAQANQWQNLSIEGD--VALNDIART--EAGELWITAEFGTLYHSRDNGQSW------ 198
Query: 156 SAEEEDFNYR-FNSISFKGKEGWIVGKPAILLHTSDAGESWERIP 199
+ E+ Y S++F G +G IVG ++ + D G++WE+ P
Sbjct: 199 --QGEELGYESLRSVAFHGNDGVIVGNGGVIFRSVDGGQTWEKTP 241
>gi|295132573|ref|YP_003583249.1| hypothetical protein ZPR_0703 [Zunongwangia profunda SM-A87]
gi|294980588|gb|ADF51053.1| protein containing BNR/Asp-box repeat [Zunongwangia profunda
SM-A87]
Length = 372
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYR---FNSISFK-GKEGWIVG--- 180
N +++G + + D W + + E + R F I F G IVG
Sbjct: 122 NQFYVVGASRYIFRNDDLNTEWEAFDVNTLGESKYALRHPKFYKIKFSLSGFGIIVGDNN 181
Query: 181 -KPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG 239
KP ++L T+D G W+++ L+ +++ + ++ D + LL
Sbjct: 182 GKP-LVLKTTDKGVHWKKVKLNGLQTDEVS------------LSDVFIFPDDTIRLLSFT 228
Query: 240 GGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
G ++ S G +++ + G + + + ++ E + +G G+LLKTT+GGKTW
Sbjct: 229 GNVYESSNEG--KDWSLLRRGKEGESLNSIAFATKKEGYISGLQGLLLKTTDGGKTW 283
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KG 173
V L D+ PDD LL + E+ + GK W+ E NSI+F
Sbjct: 209 VSLSDVFIFPDDTIR--LLSFTGNVYESSNEGKDWSLLRRGKEGES-----LNSIAFATK 261
Query: 174 KEGWIVGKPAILLHTSDAGESWERI 198
KEG+I G +LL T+D G++WE+I
Sbjct: 262 KEGYISGLQGLLLKTTDGGKTWEQI 286
>gi|288961045|ref|YP_003451384.1| glycosyl hydrolase [Azospirillum sp. B510]
gi|288913353|dbj|BAI74840.1| glycosyl hydrolase [Azospirillum sp. B510]
Length = 366
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 31/159 (19%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWER 197
++ + D G++W + P + ++ F ++GW VG ++LHT+D G++W R
Sbjct: 70 IVLSNDNGRSWTQVASPVSTT------LVAVQFPTWRDGWAVGHGGVILHTADGGQTWIR 123
Query: 198 IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV 257
QL G + A+ R+ + G D G +K T I E +
Sbjct: 124 -----QLDGR------SSEALLRK--HYGRLRDAG-----------DAKATRILEAMDLN 159
Query: 258 PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+L V +R+ E +A G G++L T +GG W
Sbjct: 160 YQNGPELPLLGVWFRTAQEGFAVGAFGMVLATRDGGNNW 198
>gi|385809661|ref|YP_005846057.1| hemagluttinin repeat-containing protein [Ignavibacterium album JCM
16511]
gi|383801709|gb|AFH48789.1| hemagluttinin repeat-containing protein [Ignavibacterium album JCM
16511]
Length = 525
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 273 SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDG 327
+ + WA G SGV+L+T NGG TW K N A YS+ I+ +V G +G
Sbjct: 44 NDNVVWACGASGVVLRTINGGNTW-EVKTPTNAAVTNYSIDAIDSLTAWVTGTEG 97
>gi|88859732|ref|ZP_01134372.1| putative oxidoreductase (putative secreted protein)
[Pseudoalteromonas tunicata D2]
gi|88818749|gb|EAR28564.1| putative oxidoreductase (putative secreted protein)
[Pseudoalteromonas tunicata D2]
Length = 354
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV----GKPAILL 186
++ GT T+ + DGGK+W RS+ + + DF + F K ++ G+ + L
Sbjct: 58 WVTGTDNTVFTSVDGGKSWQDRSVKTIQATDFR---DIAVFDAKTAIVMGVGNGQNSALY 114
Query: 187 HTSDAGESWERIPLSSQLPG---DMAFWQPHN 215
T +AGE+W+ + + G +AFW N
Sbjct: 115 LTENAGETWQLLHQNQAAEGFYDSIAFWDREN 146
>gi|192362023|ref|YP_001982875.1| BNR/Asp-box repeat domain-containing protein [Cellvibrio japonicus
Ueda107]
gi|190688188|gb|ACE85866.1| BNR/Asp-box repeat domain protein [Cellvibrio japonicus Ueda107]
Length = 714
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 34/260 (13%)
Query: 74 QTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHG--- 130
Q TLS + L+ + +Y+ ++ + +Y+ D G +A V LN G
Sbjct: 262 QMVTLSPNTYLSGS--VYDAFHRTWIVFDSEGHIYLSDDQGEHWAAVAGVDTYLNRGIYL 319
Query: 131 ------FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI 184
L+G R + + DGG+TW+ + + E ++ + G +
Sbjct: 320 AHIHRLLLVGDRGLVALSDDGGRTWSQQWLSDQAIEGI------VALNPQTLLAYGNKGL 373
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
LL + DAG+ W + Q P D P V + D WL V GL L
Sbjct: 374 LLESLDAGKHWHLL----QTPID-----PFIHEV------IAINPDKQRWLAVGAKGLML 418
Query: 245 -SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAAD 303
S G + + +E + + + +AG G LL++T+ G W R+ D
Sbjct: 419 VSDDQGKSWQRQESATHQDDYLFTVIQEPTTHTLLSAGPPGTLLRSTDAGHHWERQLNLD 478
Query: 304 NIAANLYSVKFINEKKGFVL 323
N A Y + ++ ++G ++
Sbjct: 479 N-AGEGYFHQLLSNRRGTLV 497
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 119 DIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWI 178
D+ + D NH ++ G R TLL + D G+ W + + + Y + +G +
Sbjct: 566 DLYSLLADGNHIWIGGNRGTLLHSIDAGQHWT--LVDTGTTKTLQYLTQT-----PKGSL 618
Query: 179 V--GKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL 236
+ G ++L + DAG+ W+ I +P RRI + R +G LW+
Sbjct: 619 IATGSQGLVLISRDAGKHWQHI-------------EPPTATNLRRIYH---RPNGDLWVA 662
Query: 237 VRGGGLFLSKGTGITEEFEEVP 258
R G +F S+ G + ++ +P
Sbjct: 663 SRAGEIFRSQDDG--QHWQALP 682
>gi|416901970|ref|ZP_11930358.1| BNR repeat-containing glycosyl hydrolase [Burkholderia sp. TJI49]
gi|325529808|gb|EGD06657.1| BNR repeat-containing glycosyl hydrolase [Burkholderia sp. TJI49]
Length = 322
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 240 GGLFLSKGTGIT-EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS G T + VPV + + V + WA G G +L T +GG TW+
Sbjct: 62 GIVLLSDDDGNTWRQARRVPVSAT---LSAVSFVDAKRGWAVGQWGAILATDDGGDTWVT 118
Query: 299 EKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
++ +A L+SV F + + G +G ++LQ
Sbjct: 119 QRLDTAVAQPLFSVLFTSAQDGIAVGLWSLMLQ 151
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV 179
++FV D G+ +G +L T DGG TW + + +A + F+ + ++G V
Sbjct: 89 VSFV--DAKRGWAVGQWGAILATDDGGDTWVTQRLDTAVAQPL---FSVLFTSAQDGIAV 143
Query: 180 GKPAILLHTSDAGESWERIPL 200
G +++L T D G +W R L
Sbjct: 144 GLWSLMLQTHDGGRTWTRTTL 164
>gi|149928398|ref|ZP_01916637.1| hypothetical protein LMED105_15514 [Limnobacter sp. MED105]
gi|149822891|gb|EDM82138.1| hypothetical protein LMED105_15514 [Limnobacter sp. MED105]
Length = 386
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 259 VQSRGFGILDVGYRS--QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFIN 316
V S+G +L VG R +AAG + +K N GK W + K ++ NL V+F+N
Sbjct: 46 VTSQGSNVLVVGERGIILKRDFAAGDAAQGVKD-NEGKVWTQAKVP--VSVNLTGVQFVN 102
Query: 317 EKKGFVLGNDGVLLQ 331
+ FV+G+DGV+L+
Sbjct: 103 DSLAFVVGHDGVVLK 117
>gi|16124755|ref|NP_419319.1| hypothetical protein CC_0500 [Caulobacter crescentus CB15]
gi|13421679|gb|AAK22487.1| conserved hypothetical protein [Caulobacter crescentus CB15]
Length = 338
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 28/163 (17%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPA----ILLHT 188
G L T+DGG++WA R + + E F ++S++F K G+I+G P +L T
Sbjct: 98 GEASQLWRTRDGGQSWA-RIAANQDPEGF---WDSLTFVDDKRGYILGDPTQGRFTVLFT 153
Query: 189 SDAGESWER-----IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW----LLVRG 239
DAGE+W R +PL++ P + AF N VA + GG L RG
Sbjct: 154 DDAGETWTRLDPKGVPLAA--PNEGAF-AASNGCVAIGPRGQVAFCTGGAGKARVYLSRG 210
Query: 240 GGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG 282
GG F++ T I + P + G V + W GG
Sbjct: 211 GGAFVALETPI---LADAPSK----GAFAVTFAGDGTLWVCGG 246
>gi|313127516|ref|YP_004037786.1| bnr/asp-box hypothetical protein [Halogeometricum borinquense DSM
11551]
gi|448288013|ref|ZP_21479214.1| hypothetical protein C499_14495 [Halogeometricum borinquense DSM
11551]
gi|312293881|gb|ADQ68341.1| BNR/Asp-box repeat protein [Halogeometricum borinquense DSM 11551]
gi|445570052|gb|ELY24618.1| hypothetical protein C499_14495 [Halogeometricum borinquense DSM
11551]
Length = 330
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 26/177 (14%)
Query: 132 LLGTRQT-LLETKDGGKTWA-------PRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPA 183
GT T L T D G+TW P+S+ S + + + G E P+
Sbjct: 41 FCGTFNTGLHRTDDAGETWHRVGKDTLPKSVTSVAVSPHD---AEVVYAGTE------PS 91
Query: 184 ILLHTSDAGESWERIPLSSQLPGDMAFW----QPHNRAVARRIQNMGWRADGGLWLLVRG 239
+ + DAGE+W ++ + L + W +PH V R I+ D L++ +
Sbjct: 92 AVFRSDDAGETWTKLNGLTDL-SSASSWSFPPRPHTHHV-RWIEPDPHDPD-HLYVSIEA 148
Query: 240 GGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
G L + G T + VP R + + D AWAA G G +T++GG+TW
Sbjct: 149 GALIQTHDGGETWS-DRVPSARRDTHSMATHTDAPDHAWAAAGDG-YAETSDGGETW 203
>gi|390955713|ref|YP_006419471.1| putative photosystem II stability/assembly factor-like protein
[Aequorivita sublithincola DSM 14238]
gi|390421699|gb|AFL82456.1| putative photosystem II stability/assembly factor-like protein
[Aequorivita sublithincola DSM 14238]
Length = 347
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 72 VSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGF 131
V++ A LSI+ A LY+ EA + E V+ D V + F DD G
Sbjct: 86 VTKEAVFVLSIANPAV--LYKIGFNGSEATNI-EEVFNEKDENVFYDSMKFWNDD--EGI 140
Query: 132 LLG----TRQTLLETKDGGKTWAP---RSIPSAE--EEDFNYRFNSISFKGKEGWIV--G 180
+G +++ T DGG +W+ ++P E E F ++I+ G W+ G
Sbjct: 141 AIGDPVENCMSIIVTCDGGNSWSKIPCENLPKVEKGEAAFATSNSNIAIFGDNAWVATGG 200
Query: 181 KPAILLHTSDAGESWE 196
+ + ++HT+D G++WE
Sbjct: 201 RKSRVMHTADKGKTWE 216
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 27/157 (17%)
Query: 159 EEDFNYRFNSISF-KGKEGWIVGKPA----ILLHTSDAGESWERIPLSSQLP----GDMA 209
E+D N ++S+ F EG +G P ++ T D G SW +IP + LP G+ A
Sbjct: 121 EKDENVFYDSMKFWNDDEGIAIGDPVENCMSIIVTCDGGNSWSKIPCEN-LPKVEKGEAA 179
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVP-VQSRGF-GIL 267
F N +A N W A GG R + + G T E + P V + GI
Sbjct: 180 F-ATSNSNIAIFGDN-AWVATGG-----RKSRVMHTADKGKTWEIFDTPIVHGKAMTGIY 232
Query: 268 DVGYRSQDEAWAAGGS--------GVLLKTTNGGKTW 296
+ +R ++ GG+ G T NGGKTW
Sbjct: 233 SIDFRDENNGIVFGGNWEDKPFNEGNKAITKNGGKTW 269
>gi|167624283|ref|YP_001674577.1| BNR repeat-containing protein [Shewanella halifaxensis HAW-EB4]
gi|167354305|gb|ABZ76918.1| BNR repeat protein [Shewanella halifaxensis HAW-EB4]
Length = 338
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
V + + ++ WA G +L TT+GG++W + ++ I L + F NE G +G G+
Sbjct: 83 VFFITPEKGWAVGHDATILHTTDGGQSWTLQMQSEEIEKPLLDILFFNEHDGVAVGAYGL 142
Query: 329 LLQ 331
+
Sbjct: 143 FFR 145
>gi|288961639|ref|YP_003451949.1| hypothetical protein AZL_c01120 [Azospirillum sp. B510]
gi|288913919|dbj|BAI75405.1| hypothetical protein AZL_c01120 [Azospirillum sp. B510]
Length = 382
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF- 171
P +L IA V + L +G R L + DGG +W +P + ++ F
Sbjct: 56 PEAAMLAIATVGNRL---VAVGERGIALLSDDGGASWRQAKVP------VSVSLTALQFV 106
Query: 172 KGKEGWIVGKPAILLHTSDAGESWE 196
G+ GW VG ++L T D GESW
Sbjct: 107 DGRTGWAVGHLGVVLRTDDGGESWR 131
>gi|410618178|ref|ZP_11329134.1| glycosyl hydrolase, BNR repeat [Glaciecola polaris LMG 21857]
gi|410162268|dbj|GAC33272.1| glycosyl hydrolase, BNR repeat [Glaciecola polaris LMG 21857]
Length = 297
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 105/271 (38%), Gaps = 36/271 (13%)
Query: 65 SLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVP 124
++ R F A+ + + L +G+ A + W+R + P + +D P
Sbjct: 11 AMQRTDFYQAFASNTETAVLVGNSGVVLSSADG----ATWKRTILNGQPSFLAVDTC--P 64
Query: 125 DDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI 184
D L + + G WAP + S E+ S GK W+ G +
Sbjct: 65 D--QRFIALSFDNHIWVSSPSGDDWAPIKVDSQEQ----LMTIDCSPNGK-WWVAGGFST 117
Query: 185 LLHTSDAGESWERIPLSSQ-LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLF 243
L +SD G+SW+ L + D+ F AVA A+ G++++ GG
Sbjct: 118 FLSSSDKGQSWQSNTLEEDAIITDVVF-LSEQEAVAT--------AEFGMFVVTEDGGNT 168
Query: 244 LSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAAD 303
+ EF P + + S E W AG +G + T N G TW ++ A
Sbjct: 169 WQVSGFMPAEF--YPHAAY--------FTSIAEGWVAGLNGFIYYTKNSGNTWHKQSADS 218
Query: 304 NIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
+ +Y + I+ F LG++ +L+ G
Sbjct: 219 TVP--IYQFQEIDGVL-FALGDNATVLKLTG 246
>gi|149372986|ref|ZP_01891942.1| putative oxidoreductase [unidentified eubacterium SCB49]
gi|149354346|gb|EDM42913.1| putative oxidoreductase [unidentified eubacterium SCB49]
Length = 335
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 122/280 (43%), Gaps = 52/280 (18%)
Query: 72 VSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGF 131
+++TA +S+ LY+ +EA + E VYI + V I+F DDL G
Sbjct: 73 IARTAQSVFVLSIENPAVLYKLDYADKEATTMTE-VYIEENEKVFYDAISFF-DDL-EGI 129
Query: 132 LLGT----RQTLLETKDGGKTWAPRS---IPSAEEED--FNYRFNSISFKGKEGWIV--G 180
+G ++++T DGGK+W S +P+ EE + F ++I+ WIV G
Sbjct: 130 AMGDPIDGCLSVIKTIDGGKSWFKLSCNILPAVEEGEAAFAASNSNIAIHENNIWIVSGG 189
Query: 181 KPAILLHTSDAGESWER----IPLSSQLPG--DMAFWQPHNRAV-----ARRIQNMGWRA 229
K A + ++ D G +WE I + G + F+ + + ++ N G +A
Sbjct: 190 KRARVFYSPDRGANWEVYNTPIIQGQTMTGIYSVDFYDENLGVIFGGDWEKKDFNEGNKA 249
Query: 230 ---DGG-LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
DGG W L+ G KG G + VP S G +E A G GV
Sbjct: 250 ITTDGGKTWKLISNG-----KGPGYRSSVKFVP-GSNG-----------NELVAVGSPGV 292
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
+++ G+TW A N Y+++F+N+ F GN
Sbjct: 293 SY-SSDKGQTW---TALSN--QGFYAIEFLNDSIAFASGN 326
>gi|395804201|ref|ZP_10483442.1| BNR repeat-containing glycosyl hydrolase [Flavobacterium sp. F52]
gi|395433845|gb|EJF99797.1| BNR repeat-containing glycosyl hydrolase [Flavobacterium sp. F52]
Length = 353
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 118/284 (41%), Gaps = 54/284 (19%)
Query: 72 VSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGF 131
++QT+ +S+A LY K + + VY V+P V + F D G
Sbjct: 93 IAQTSKDIFLLSVANPALLYSVSKKDRKV----KLVYKEVNPKVFYDSMQFWND--KEGI 146
Query: 132 LLG--TRQT--LLETKDGGKTWAP---RSIP--SAEEEDFNYRFNSISFKGKEGWIV--G 180
+G T T ++ T+DGG+TW +P S E F +I KG + W+V G
Sbjct: 147 AIGDPTEDTFSIIVTRDGGETWTKLLSDKLPTNSTGEAAFAASNTNIVIKGNDTWLVSGG 206
Query: 181 KPAILLHTSDAGESWERI--PL--SSQLPGDMA--FWQPHNRAVA--------RRIQNMG 226
+ A + ++ D ++W+ + P+ Q+ G F+ +A + N
Sbjct: 207 RKARVFYSPDKAKTWKVVETPIVQGKQMTGIFTADFYDSKQGFIAGGDYDLPNNKANNKA 266
Query: 227 WRADGG-LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
+ DGG W L+ G + G G + VP G I+ V GS
Sbjct: 267 FTKDGGKTWQLI-GQNM----GFGYASCIQYVP-GGNGREIVCV------------GSEG 308
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ + NGG+ W+ + + DN ++++F+N G++ V+
Sbjct: 309 IQYSQNGGENWM-QLSTDN---KFFTIRFVNRNTAIAAGHNKVV 348
>gi|373459686|ref|ZP_09551453.1| glycosyl hydrolase BNR repeat-containing protein [Caldithrix abyssi
DSM 13497]
gi|371721350|gb|EHO43121.1| glycosyl hydrolase BNR repeat-containing protein [Caldithrix abyssi
DSM 13497]
Length = 873
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 21/153 (13%)
Query: 178 IVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLV 237
I+G + L G+SWE + G+M ++ P++ + AD GL++
Sbjct: 10 ILGMASFLF-----GQSWEVVK-----EGEMEYY-PNSGVF--------FNADTGLFVGD 50
Query: 238 RGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSG-VLLKTTNGGKTW 296
G + + G G++ + P DVG+ + +A SG + KT +GG TW
Sbjct: 51 DGAVMMTTDG-GVSGDIVRYPEYDGAPSWSDVGFANNLVGYACASSGGCIYKTEDGGYTW 109
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ +L ++ +NE +V G+DGVL
Sbjct: 110 TQVGDTAQFTFDLNNIAVVNENTVYVAGDDGVL 142
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 37/193 (19%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGE 193
G+ + T DGG +W IP+A F Y ++ G++ + T+D G
Sbjct: 273 GSDGHVTMTTDGGNSWNDIDIPAAHSVIFVYFLDA-----NTGYVFARDGQWFKTTDGGV 327
Query: 194 S------WERIP------------LSSQLPGDMAF-------WQ-PHNRAVARRIQNMGW 227
+ W + L GD W P N V R + +
Sbjct: 328 TYTPLLGWPNVDFKGLAISPANTILGVCFKGDATISTDGGYNWTYPDNLLVGAR--STLY 385
Query: 228 RADGGLWLLVRGGG----LFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS 283
AD L GG L+ S G+T + P+ G I V + ++ A+AAG
Sbjct: 386 TADFANENLALAGGYKGILYRSTDGGLTWQEVPNPMYDEGKSIYVVRFVDENLAFAAGSK 445
Query: 284 GVLLKTTNGGKTW 296
G ++K+ +GG+TW
Sbjct: 446 GYIMKSEDGGQTW 458
>gi|443243252|ref|YP_007376477.1| glycosyl transferase [Nonlabens dokdonensis DSW-6]
gi|442800651|gb|AGC76456.1| glycosyl transferase [Nonlabens dokdonensis DSW-6]
Length = 434
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 32/201 (15%)
Query: 112 DPGVVLLDIAFVPDDLNHGF------LLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYR 165
DP + + D++ + D N F L G + + +T D G TW ++ S
Sbjct: 83 DPDLGIADVSGI--DSNTAFVAAYPRLAGQQGGIWKTTDAGMTWTQQTGASFNNAT---S 137
Query: 166 FNSI--SFKGKEGWIVGKPAI----LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVA 219
F +I F G +G PA + ++D G ++ RIP S+ LP +A +
Sbjct: 138 FPNIVHYFDANNGLAIGDPANGYWEIYSSNDGGATYTRIP-SASLPAPLA----NEFGYL 192
Query: 220 RRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG----FGILDVGYRSQD 275
+ ++G +W G + S G+T + P+ G FG D+ + + D
Sbjct: 193 AQFAHLG----DNIWFTTSAGRIIHSANRGMTWNAYQSPLSDFGGTTIFG--DISFATSD 246
Query: 276 EAWAAGGSGVLLKTTNGGKTW 296
+G + K+T+ G+TW
Sbjct: 247 RGVIQDNAGNIYKSTDSGQTW 267
>gi|333893067|ref|YP_004466942.1| BNR repeat-containing protein [Alteromonas sp. SN2]
gi|332993085|gb|AEF03140.1| BNR repeat-containing protein [Alteromonas sp. SN2]
Length = 348
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 73/199 (36%), Gaps = 70/199 (35%)
Query: 105 ERVYI-PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
E YI P+ VLLDI D ++G R +L ++DG + ++P+
Sbjct: 24 EDAYIAPLVEQSVLLDI----DADKFVVVVGERGHILISEDG-TAFNQVAVPTQA----- 73
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQ 223
+ + G W VG A ++H+SD G+SWE IQ
Sbjct: 74 -TLTATTVVGNHIWAVGHDATIIHSSDKGQSWE-------------------------IQ 107
Query: 224 NMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS 283
N+ P R F LDV + + AAG
Sbjct: 108 NVQ-------------------------------PELQRPF--LDVLFFDESHGIAAGAY 134
Query: 284 GVLLKTTNGGKTWIREKAA 302
G+ +TT+GGK+W E+ A
Sbjct: 135 GLFYRTTDGGKSWETERHA 153
>gi|392309197|ref|ZP_10271731.1| hypothetical protein PcitN1_11081 [Pseudoalteromonas citrea NCIMB
1889]
Length = 331
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 24/146 (16%)
Query: 75 TATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLG 134
TA SLS +L+ G S + WE D G LDI F D ++G+ +G
Sbjct: 77 TAVTSLSANLSWACGHDGTILFSRDDGRNWEIQQYSPDIGKPCLDIEF--KDADNGYAIG 134
Query: 135 TRQTLLETKDGGKTWAPRSIP-------------------SAEEEDFNY---RFNSISFK 172
T+DGGKTW + I +A EE+ + FN +
Sbjct: 135 AYGMFYSTQDGGKTWHKKFINEFVHPDDKEYLAQLKEEDIAAYEEETQFILPHFNRLLLL 194
Query: 173 GKEGWIVGKPAILLHTSDAGESWERI 198
+ +VG+ ++ + D G+SW+R+
Sbjct: 195 EGKQVLVGEMGLVALSDDDGKSWQRL 220
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 36/154 (23%)
Query: 166 FNSISFKGKEGWIVGKPAILLHTSDAGESWER--IPLSSQLPGDMAFWQPHNRAVARRIQ 223
F I++ G VGK ++ + D G++W++ +P+ L AV
Sbjct: 37 FTDITYNGSSLIAVGKHGTVVTSLD-GKAWQQANVPVQVLLT-----------AVTSLSA 84
Query: 224 NMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS 283
N+ W G + S+ G E ++ G LD+ ++ D +A G
Sbjct: 85 NLSWACG-------HDGTILFSRDDGRNWEIQQYS-PDIGKPCLDIEFKDADNGYAIGAY 136
Query: 284 GVLLKTTNGGKTWIREKAADNIAANLYSVKFINE 317
G+ T +GGKTW + KFINE
Sbjct: 137 GMFYSTQDGGKTWHK--------------KFINE 156
>gi|339323867|ref|YP_004682760.1| transporter [Cupriavidus necator N-1]
gi|338171860|gb|AEI82912.1| transporter [Cupriavidus necator N-1]
Length = 361
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G R T++ + DG + W S P+ + S+ F +EGW G +LHT+D
Sbjct: 69 VGERGTVVLSDDGSRNWRHASAPT------DVTLTSVHFATPREGWATGHAGTVLHTADG 122
Query: 192 GESWER 197
G +W R
Sbjct: 123 GLTWSR 128
>gi|426409211|ref|YP_007029310.1| hypothetical protein PputUW4_02306 [Pseudomonas sp. UW4]
gi|426267428|gb|AFY19505.1| hypothetical protein PputUW4_02306 [Pseudomonas sp. UW4]
Length = 318
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 28/195 (14%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ ++ P D L +AF D L G +G TLL T DGG+ W + +
Sbjct: 70 WQGIHTPADR--TLTGLAFANDRL--GIAVGHGATLLRTTDGGQQWTAVGVDGIGHDS-- 123
Query: 164 YRFNSISFKGKEGWIV-GKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRI 222
+++ G + ++ G L + DAG SW + + + +R +A+ +
Sbjct: 124 --LLGVTYLGGQHFVAYGAFGHYLESVDAGLSWSKKTVMG---------EDFDRHIAKVL 172
Query: 223 QNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA-G 281
+ G L+L G L S+ G+ + + P + FG G ++ A A G
Sbjct: 173 -----KVGGDLFLFGESGTLLRSRDLGLNWDALQSPYEGSFFG----GLQTPSGALLAFG 223
Query: 282 GSGVLLKTTNGGKTW 296
G L ++ + G TW
Sbjct: 224 MRGNLYRSNDQGDTW 238
>gi|425456034|ref|ZP_18835745.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9807]
gi|389802968|emb|CCI18051.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9807]
Length = 775
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 13/216 (6%)
Query: 83 SLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLET 142
++AA GL + +E+ W ++ P + L A P++ N F + L +
Sbjct: 142 NIAAAVGLEKGVYLTEDGGKNWSNIF-PTKALITFL--AITPNNPNRIFFGDEQGKLYTS 198
Query: 143 KDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP--L 200
DGGKTW +P+ F+ + K ++ K A + T D G++++ + +
Sbjct: 199 SDGGKTWQNLPLPANVGAVDTIAFSPNLDRDKTFFVGTKEAGIFKTVDDGKTFQAVNEGI 258
Query: 201 SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQ 260
++ D+ + R + + W G+++ GG + G+T++ + +
Sbjct: 259 KDKIIEDIVISPDYAR--NSTVYAITWY--DGMYVSQDGGKSWTKMSEGLTKDKQADDYK 314
Query: 261 SRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
F L + QD + G +G L KTT+ GK W
Sbjct: 315 VPHFMDLKI---VQDTMFLGGFNG-LFKTTDSGKQW 346
>gi|383935710|ref|ZP_09989144.1| BNR repeat-containing protein [Rheinheimera nanhaiensis E407-8]
gi|383703279|dbj|GAB59235.1| BNR repeat-containing protein [Rheinheimera nanhaiensis E407-8]
Length = 344
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI 315
+VPVQ+ + V + ++ + WA G +L T++GG +W + A L+ + F
Sbjct: 76 QVPVQAN---LNSVYFINKQQGWAVGHDASILMTSDGGLSWTLQHYAPQNDKPLFDIYFF 132
Query: 316 NEKKGFVLGNDGVL 329
NE++G +G G+
Sbjct: 133 NEQQGIAVGAYGLF 146
>gi|398993810|ref|ZP_10696745.1| BNR/Asp-box repeat protein [Pseudomonas sp. GM21]
gi|398133718|gb|EJM22903.1| BNR/Asp-box repeat protein [Pseudomonas sp. GM21]
Length = 367
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGK 174
VLLD+A L +G R ++ + D G++W +P + +++ F +
Sbjct: 48 VLLDLARAGARL---VAVGERGIVMLSDDNGQSWRQADVP------VSVTLSAVQFVNDR 98
Query: 175 EGWIVGKPAILLHTSDAGESW 195
+GW VG ++L T+DAGE W
Sbjct: 99 QGWAVGHAGVVLATTDAGEHW 119
>gi|399009055|ref|ZP_10711501.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM17]
gi|398114064|gb|EJM03899.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM17]
Length = 318
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 111 VDPG-VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI 169
+DPG ++LLDI V L F G R +L + D G W P+ + +
Sbjct: 34 IDPGRIILLDIQRVGSQL---FSAGERGWILRSTDDGGHWQAIRTPA------DRTLTGL 84
Query: 170 SFKGKE-GWIVGKPAILLHTSDAGESWERIPL 200
+F + G VG A LL T+D G+ W IP+
Sbjct: 85 AFADERLGIAVGHGATLLRTTDGGQQWTAIPV 116
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 24/115 (20%)
Query: 105 ERVYIPVDPGVVLLDI--------AFVPDDLNHGFLLGTRQ-------------TLLETK 143
ER+ I V G LL A +D+ H LLG LE+
Sbjct: 89 ERLGIAVGHGATLLRTTDGGQQWTAIPVEDIGHDSLLGVTHLGGQHFVAYGAFGHYLESL 148
Query: 144 DGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
DGG +W+ +++ + EDF+ + G + ++ G+ LL + D G++WE +
Sbjct: 149 DGGSSWSRKTVLN---EDFDRHIAKVLKAGPDLFLFGESGTLLRSRDLGQNWEAL 200
>gi|298207944|ref|YP_003716123.1| hypothetical protein CA2559_06820 [Croceibacter atlanticus
HTCC2559]
gi|83850585|gb|EAP88453.1| hypothetical protein CA2559_06820 [Croceibacter atlanticus
HTCC2559]
Length = 421
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 254 FEEVPVQSRGFGILDVGYRSQDEAWAA-GGSGVLLKTTNGGKTWIREKAADNIAANLY-- 310
+ PV + G DV + + + W A G +G + KT +GG+ W +I+AN+Y
Sbjct: 25 LDNAPVNANGTRFDDVFFINSELGWIANGANGNVFKTIDGGENWTEVLNEADISANVYYR 84
Query: 311 SVKFINEKKGFV 322
+++F NE G V
Sbjct: 85 NIEFFNENIGIV 96
>gi|429214317|ref|ZP_19205481.1| BNR repeat-containing protein [Pseudomonas sp. M1]
gi|428155912|gb|EKX02461.1| BNR repeat-containing protein [Pseudomonas sp. M1]
Length = 353
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP--RSIPSAEEEDFNYRFNSISFKGK 174
LL + F D HG +LG L T DGG++W +P+ + +++ +G
Sbjct: 155 LLAVHF--SDARHGLVLGAYGLALATADGGRSWQSWMGHLPNPQ----GLHLYAVAGQGS 208
Query: 175 EGWIVGKPAILLHTSDAGESWERI 198
+ +I G+ +LL + DAGE ++ +
Sbjct: 209 DLYIAGEQGLLLRSRDAGEHFQAL 232
>gi|395008504|ref|ZP_10392154.1| putative photosystem II stability/assembly factor-like protein
[Acidovorax sp. CF316]
gi|394313506|gb|EJE50518.1| putative photosystem II stability/assembly factor-like protein
[Acidovorax sp. CF316]
Length = 376
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 25/165 (15%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R ++ + DGG++W +P + ++ F + GW VG ++L T D
Sbjct: 53 VGERGLVIYSNDGGQSWVQARVP------VSCTLTALRFADAQRGWAVGSMGVVLATEDG 106
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G SW R L G A A A+ + G +++G +
Sbjct: 107 GASWRRC-----LDGQTAARLALQAAQAQLQAS-------------PPGSEAMAQGNLLV 148
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
E+ + + + +LD+ WA G G+ +T+GG+ W
Sbjct: 149 EDAQRLVAEGADKPLLDIALGDDGALWAVGAYGLAFSSTDGGREW 193
>gi|455652241|gb|EMF30893.1| oxidoreductase [Streptomyces gancidicus BKS 13-15]
Length = 353
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 33/232 (14%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK 172
P V +A V D ++ GT T+L T DGG+TW S P A E F + +F
Sbjct: 41 PDVRFRGLAAVSRDT--AWVAGTLGTVLRTTDGGRTWRDVSPPGAGELQFR---DVEAFD 95
Query: 173 GKEGWIV----GKPAILLHTSDAGESWE---RIPLSSQLPGDMAFWQP-HNRAVARRIQN 224
+ ++ G+ + + T D G +W R P + + F+ P H A++ +
Sbjct: 96 ARRAVVLAIGEGEDSRVYRTDDGGTTWTETFRNPDARAFYDCLTFFDPRHGLAMSDPV-- 153
Query: 225 MGWRADGGLWLL-VRGGGLFLS--KGTGITEEFE-EVPVQSRGFGILDVGYRSQDEAWAA 280
DG +L R GG + +G+ E E + G ++ G R + W A
Sbjct: 154 -----DGKFRILSTRDGGRSWTVLPDSGMPPALEGEAGFAASGQCLVSSGPR---DVWLA 205
Query: 281 GGSGV---LLKTTNGGKTWIREKA---ADNIAANLYSVKFINEKKGFVLGND 326
G +L + + G+TW AD+ A ++++ F + G +G D
Sbjct: 206 TGGAARARVLHSADRGRTWTVTATTIPADDPARGVFALAFRDRHHGLAVGGD 257
>gi|409395431|ref|ZP_11246504.1| hypothetical protein C211_08589 [Pseudomonas sp. Chol1]
gi|409119927|gb|EKM96298.1| hypothetical protein C211_08589 [Pseudomonas sp. Chol1]
Length = 319
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 41/225 (18%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRS-IPSAEEEDFNYRFN 167
+P D L DIA D +H +G +L T+DGG +W + +P +E + + N
Sbjct: 71 LPTDVRNTLQDIAVW--DAHHAVAVGNDGEVLYTRDGGASWQQAADVPRSEVAN---KLN 125
Query: 168 SISFKGKEGWIV--GKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNM 225
+ G EG + G+ LL + D G +W R+ R +++
Sbjct: 126 RVRI-GAEGLAIASGEMGALLISRDYGSTWGRL---------------------REEEDV 163
Query: 226 GWR----ADGGLWLLV-RGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA 280
W DGG +LV G + L G +E+ ++ + G ++ V +R A
Sbjct: 164 AWNDVAILDGGRLVLVGEFGRIVLGNLDG--QEWRDIDAGT-GTSLMAVSFRDAQNGVAV 220
Query: 281 GGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE-KKGFVLG 324
G G +L+T++ G++W + +L+ V ++ E ++ FV G
Sbjct: 221 GLEGTVLETSDAGESWTPRDV--GLTDHLFDVAWLGEQQRWFVTG 263
>gi|406834826|ref|ZP_11094420.1| photosystem II stability/assembly factor [Schlesneria paludicola
DSM 18645]
Length = 1097
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 130 GFLLGTRQTLLETKDGGKTW--APRSIPSAEEEDFNYRFNSISFKGKEGWIVGKP-AILL 186
G+L G +++T +GG W P +P E+ ++R ++ K + W+ G P +++
Sbjct: 228 GWLAGDGALVMQTTNGGLVWDAPPGDLPDELRENMDFR--AVEVKEENVWLAGSPGSVIW 285
Query: 187 HTSDAGESWER 197
H+ D G+ WE+
Sbjct: 286 HSPDGGQHWEK 296
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 174 KEGWIVGKPAILLHTSDAGESWERIP--LSSQLPGDMAFWQPHNRAVARRIQNMGWRADG 231
K GW+ G A+++ T++ G W+ P L +L +M F RAV + +N+
Sbjct: 226 KSGWLAGDGALVMQTTNGGLVWDAPPGDLPDELRENMDF-----RAVEVKEENVWLAGSP 280
Query: 232 G--LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKT 289
G +W GG + + TG + P+ + V + + + A G G++L+T
Sbjct: 281 GSVIWHSPDGGQHWEKQLTG-----QSTPIAA-------VRFSNPQQGVAVGTFGLILRT 328
Query: 290 TNGGKTW 296
NGGK+W
Sbjct: 329 ENGGKSW 335
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 83/221 (37%), Gaps = 53/221 (23%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE- 175
L D+ FV L F +G ++ DGG+ W + + F+ S+ F +
Sbjct: 39 LHDVQFVGSKLV--FAVGEHGACWKSDDGGRRW------TRLDCGFDGSLRSVCFLSDQI 90
Query: 176 GWIVGKPA---------ILLHTSDAGESWER-----IPLSS-----QLPGDMAFWQPHNR 216
GWI G+ +LL T D G++WER +PL S L + QP
Sbjct: 91 GWIAGREVAPFPELNSGVLLMTRDGGKTWERQNRTGLPLLSYVKFFDLESGVIVGQPTAA 150
Query: 217 AVARRIQNMGWRADGGL-WLLVRG-------GGLFLSKGTGIT------------EEFEE 256
A A M DGG W V+G F G ++ E
Sbjct: 151 APA----GMMTSEDGGKSWHAVQGQASREWLAASFPQAEQGAVAGANAQVSLFGNDQLFE 206
Query: 257 VPVQSRGF-GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ +RG+ I + W AG ++++TTNGG W
Sbjct: 207 SQLSARGYRSIRALNILPNKSGWLAGDGALVMQTTNGGLVW 247
>gi|452945260|gb|EME50785.1| hypothetical protein H074_38143 [Amycolatopsis decaplanina DSM
44594]
Length = 346
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 44/225 (19%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV----GK 181
D ++ G++ T+L T D G+TW P + E DF + +F + G
Sbjct: 49 DSRTAWVSGSKGTILRTTDRGRTWKPVAPAGTEALDFR---DIEAFDADHAVALSIGPGD 105
Query: 182 PAILLHTSDAGESWERIPLSSQLPG---DMAFWQPHNRAVAR--------RIQNMGWRAD 230
+ + T + G+SW R+ + P D + H R +A R+Q+ +D
Sbjct: 106 ASRIYRTDNGGKSW-RLSFQNSDPAAFYDCVAFFDHRRGLAMSDPVDGKFRLQST---SD 161
Query: 231 GG-LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGV---L 286
GG W V G+ + + EF + G + G R +AW A G G +
Sbjct: 162 GGRTWKPVPAEGMVPA----LDGEFG---FAASGQCLTTSGPR---DAWIATGGGARARV 211
Query: 287 LKTTNGGKTWIREKAADN-----IAANLYSVKFINEKKGFVLGND 326
L + +GG TW +AAD +A ++SV F + + G +G D
Sbjct: 212 LHSGDGGTTW---EAADTPLPSGASAGVFSVTFRDPRHGVAIGGD 253
>gi|389845847|ref|YP_006348086.1| hypothetical protein HFX_0363 [Haloferax mediterranei ATCC 33500]
gi|448616536|ref|ZP_21665246.1| hypothetical protein C439_08595 [Haloferax mediterranei ATCC 33500]
gi|388243153|gb|AFK18099.1| hypothetical protein HFX_0363 [Haloferax mediterranei ATCC 33500]
gi|445751191|gb|EMA02628.1| hypothetical protein C439_08595 [Haloferax mediterranei ATCC 33500]
Length = 338
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 17/184 (9%)
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV 179
IA P + + F L T+DGG TW S E+ S++ + +V
Sbjct: 43 IAADPREPHRAFCGTFDAGLFRTRDGGDTWH-----SVGEDTVLESVTSLAISPTDPDVV 97
Query: 180 ---GKPAILLHTSDAGESWERIPLSSQLPGDMAFW----QPHNRAVARRIQNMGWRADGG 232
+P+ + + D GE+W +P S L + W +PH AR I+ M
Sbjct: 98 YTGSEPSAVFRSVDGGETWTELPPLSDLES-SSMWAFPPRPHTHH-ARWIE-MDPTDPDR 154
Query: 233 LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
L++ + G L S G T + + VP R + W A G G ++ +G
Sbjct: 155 LFVAIEAGALVRSLDGGETWQ-DRVPSSKRDVHSMTTHPDKPGHVWVAAGDG-YAESNDG 212
Query: 293 GKTW 296
GKTW
Sbjct: 213 GKTW 216
>gi|114321615|ref|YP_743298.1| BNR repeat-containing glycosyl hydrolase [Alkalilimnicola ehrlichii
MLHE-1]
gi|114228009|gb|ABI57808.1| glycosyl hydrolase, BNR repeat-containing protein [Alkalilimnicola
ehrlichii MLHE-1]
Length = 371
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
+ +G +L T+DGG+TWA P +E + R + + E W VG+ LL
Sbjct: 135 DEAVAVGNDGVVLYTRDGGETWAVGDAPRSEIANKLLRVRTGA--AGEAWAVGEMGALLR 192
Query: 188 TSDAGESWER-IPLSSQLPGDMAF 210
T D G +W R +P D++F
Sbjct: 193 TGDGGATWSRAMPEEDLAWADLSF 216
>gi|385810368|ref|YP_005846764.1| hypothetical protein IALB_1789 [Ignavibacterium album JCM 16511]
gi|383802416|gb|AFH49496.1| Hypothetical protein IALB_1789 [Ignavibacterium album JCM 16511]
Length = 432
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 30/169 (17%)
Query: 167 NSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG----DMAFWQPHNRAVARRI 222
N +F W+ G +L TSD G +W L + PG D+ F
Sbjct: 35 NIFAFDSLNIWVAGDSGYILFTSDLGNTW---TLQNFRPGFQINDIYFLD---------- 81
Query: 223 QNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFG-----ILDVGYRSQDEA 277
QN GW + G + LS G + QSR F + + + Q +
Sbjct: 82 QNNGWAIENGTEDGINVDNFILSTTDG------GLNWQSRRFRPDNLILYTICFVDQMKG 135
Query: 278 WAAGGSGVLLKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFVLG 324
G + + TTNGG W I A ++ V+FIN+ GF +G
Sbjct: 136 IVGGDNNIFSITTNGGVDWTEIPRDTATFSHFPVHKVRFINDSVGFAVG 184
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 14/128 (10%)
Query: 211 WQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVG 270
W V+ ++N+ +W+ G + + G T + GF I D+
Sbjct: 22 WNVFQTPVSTNLKNIFAFDSLNIWVAGDSGYILFTSDLGNTWTLQNF---RPGFQINDIY 78
Query: 271 YRSQDEAWAAGG--------SGVLLKTTNGGKTW-IREKAADNIAANLYSVKFINEKKGF 321
+ Q+ WA +L TT+GG W R DN+ LY++ F+++ KG
Sbjct: 79 FLDQNNGWAIENGTEDGINVDNFILSTTDGGLNWQSRRFRPDNLI--LYTICFVDQMKGI 136
Query: 322 VLGNDGVL 329
V G++ +
Sbjct: 137 VGGDNNIF 144
>gi|338212703|ref|YP_004656758.1| oxidoreductase [Runella slithyformis DSM 19594]
gi|336306524|gb|AEI49626.1| oxidoreductase [Runella slithyformis DSM 19594]
Length = 341
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 67/225 (29%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFN-------------------------YR--- 165
G++ T+L T +GG+TW+ S+P E+ DF YR
Sbjct: 47 GSKGTVLRTDNGGETWSVLSVPGTEKLDFRGIKGLDKKTAVAVSAGLAEEGQARIYRTDD 106
Query: 166 -----------------FNSISF-KGKEGWIVGKPA----ILLHTSDAGESWERI---PL 200
+ I+F K G I G P LL T+D G++W+R+ L
Sbjct: 107 AGKTWQQVWQTDQKGVFLDGIAFWDKKNGLIFGDPIDNHLYLLKTTDGGKTWQRLTPETL 166
Query: 201 SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQ 260
+ LP + +F ++ V + +N+ W GG + S G T + + P++
Sbjct: 167 PANLPNEASFAASNSTMVMQGTKNV-WVGTGG----ADHARVLYSTDRGTTWQVTDTPMK 221
Query: 261 SRG-FGILDVGYRSQDEAWAAGGSGV--------LLKTTNGGKTW 296
+ GI + + A GG ++ T +GGK+W
Sbjct: 222 ANASSGIFGLHFWDAQNGIAVGGDYKADKEAFENVIVTQDGGKSW 266
>gi|399025662|ref|ZP_10727652.1| putative photosystem II stability/assembly factor-like protein
[Chryseobacterium sp. CF314]
gi|398077635|gb|EJL68603.1| putative photosystem II stability/assembly factor-like protein
[Chryseobacterium sp. CF314]
Length = 419
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 22/223 (9%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W P G D+ F+ +++ G + +T DGG +WA +++ S E
Sbjct: 22 WTAFSYPTSTGGRFDDVFFLNENVGWA-ARGGNGAVFKTTDGGSSWAQQTVGSPPNE--- 77
Query: 164 YRFNSISFKGKEGWIVGKPAILLH-TSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRI 222
+ +I F + +G + + T+D G SW+R+ S P + +
Sbjct: 78 -YYRNIEFLNENVGFLGTLSDNFYKTADGGNSWQRVTKISPYPQAICGLDCVGTSTVYGC 136
Query: 223 QNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG 282
G W ++ K T ++ + + S F ++++ + ++ + G
Sbjct: 137 ---------GAWF----SPAYIIKSTDSGNTWQYIDMSSYAFALVEIVFIDENIGFVGGS 183
Query: 283 S---GVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFV 322
V+LKTT+GG +W + ++ ++ ++ ++ K F
Sbjct: 184 DDDGAVILKTTDGGASWTKIYNSNIPFEYVWKMQLLDNNKMFC 226
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 98/240 (40%), Gaps = 31/240 (12%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA----- 150
K+ + S+W + + P +I F+ +++ GFL +T DGG +W
Sbjct: 58 KTTDGGSSWAQQTVGSPPNEYYRNIEFLNENV--GFLGTLSDNFYKTADGGNSWQRVTKI 115
Query: 151 ---PRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
P++I + + + G W PA ++ ++D+G +W+ I +SS
Sbjct: 116 SPYPQAICGLD------CVGTSTVYGCGAWF--SPAYIIKSTDSGNTWQYIDMSS----- 162
Query: 208 MAFWQPHNRAVARRIQNMGWRADGGLWLL-VRGGGLFLSKGTGITEEFEEVPVQSRGFGI 266
AF + I +G D G +L GG +K FE V +
Sbjct: 163 YAFALVEIVFIDENIGFVGGSDDDGAVILKTTDGGASWTKIYNSNIPFEYVWKMQ----L 218
Query: 267 LDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGND 326
LD A SG L+K+ NGG TW +A D + +V F +E G++ G++
Sbjct: 219 LDNNKMFCSIESEAPNSGKLIKSLNGGVTW---EANDFPDVYVQAVGFTSETHGWMGGHN 275
>gi|329894725|ref|ZP_08270528.1| hypothetical protein IMCC3088_934 [gamma proteobacterium IMCC3088]
gi|328922820|gb|EGG30151.1| hypothetical protein IMCC3088_934 [gamma proteobacterium IMCC3088]
Length = 304
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 23/162 (14%)
Query: 174 KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL 233
E W G + T D GE+WE + + I N+ + D
Sbjct: 111 NEVWAAGSFSSFYRTQDQGETWEDLSIGED----------------ATITNLQFVDDEFG 154
Query: 234 WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGG 293
+ + G +F + G E++ + + F L + + ++ W G G++ T +GG
Sbjct: 155 YAVGEFGMVFQTADGG--EQWSVIEPVADEFYPLSLHFSDRERGWVGGVLGIIFATEDGG 212
Query: 294 KTWIREKAADNIAANLYSVKFINEKKG-FVLGNDGVLLQYLG 334
TW+++++ + A FI+ ++G F G+ G LL+ G
Sbjct: 213 ATWVQQESEGHAAV----YGFIDSEQGLFAFGDQGSLLKLEG 250
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIP 155
++++ WE + I D + ++ FV D+ G+ +G + +T DGG+ W+ P
Sbjct: 124 RTQDQGETWEDLSIGED--ATITNLQFVDDEF--GYAVGEFGMVFQTADGGEQWSVIE-P 178
Query: 156 SAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDAGESW 195
A+E + S+ F +E GW+ G I+ T D G +W
Sbjct: 179 VADE----FYPLSLHFSDRERGWVGGVLGIIFATEDGGATW 215
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
V R+ +E WAAG +T + G+TW E + A + +++F++++ G+ +G G+
Sbjct: 105 VDCRADNEVWAAGSFSSFYRTQDQGETW--EDLSIGEDATITNLQFVDDEFGYAVGEFGM 162
Query: 329 LLQ 331
+ Q
Sbjct: 163 VFQ 165
>gi|113866863|ref|YP_725352.1| hypothetical protein H16_A0837 [Ralstonia eutropha H16]
gi|113525639|emb|CAJ91984.1| conserved hypothetical protein [Ralstonia eutropha H16]
Length = 326
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 26/217 (11%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDFNYRFNSISFKGK 174
+L + F+ D G+ G +L T+DGG+TW R+ AE+ + F+S +
Sbjct: 87 LLTSVQFI--DARRGYAAGHDGVVLGTQDGGETWMLLRAERGAEQPILSLYFDSP----E 140
Query: 175 EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
G VG + T DAG +W I + + D R + +M G L+
Sbjct: 141 HGIAVGLYGWAIETRDAGRTWSEIKVEAGENAD------------RHLLHMFGSGRGSLF 188
Query: 235 LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEA-WAAGGSGVLLKTTNGG 293
+ GG +F S G + + G L G+ D + G G L ++++ G
Sbjct: 189 IAGEGGTIFRSADRGKSWQASTTGDN----GSLWYGHSLPDGSLLVCGMRGHLYRSSDDG 244
Query: 294 KTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
KTW ++ + +L + + + + V+G G +L
Sbjct: 245 KTW--QRVDSHTTQSLTGIAELADGRIVVVGMAGTVL 279
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 20/172 (11%)
Query: 125 DDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI 184
D HG +G +ET+D G+TW+ + + E D + S +G +I G+
Sbjct: 137 DSPEHGIAVGLYGWAIETRDAGRTWSEIKVEAGENADRHLLHMFGSGRGSL-FIAGEGGT 195
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
+ ++D G+SW+ +S + + W H+ DG L + G L+
Sbjct: 196 IFRSADRGKSWQ----ASTTGDNGSLWYGHS------------LPDGSLLVCGMRGHLYR 239
Query: 245 SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
S G T + + GI ++ + G +G +L + +GGKT+
Sbjct: 240 SSDDGKTWQRVDSHTTQSLTGIAEL---ADGRIVVVGMAGTVLDSKDGGKTF 288
>gi|397170499|ref|ZP_10493912.1| BNR repeat-containing protein [Alishewanella aestuarii B11]
gi|396087742|gb|EJI85339.1| BNR repeat-containing protein [Alishewanella aestuarii B11]
Length = 349
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI 315
+VPVQ+ + V + D WA G +L T +GGK+W ++ + L V F
Sbjct: 81 QVPVQAL---LTSVYFVDADYGWAVGHDATILHTQDGGKSWQIQQFLPQLDKPLMDVYFF 137
Query: 316 NEKKGFVLGNDGVL 329
+ ++G +G G+
Sbjct: 138 DRQRGMAIGAYGMF 151
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFL-LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFN 167
+P+ +L D+ +P GF +G R +L + DG + W +P
Sbjct: 40 VPLAERSLLTDVVAIP---TAGFAAVGERGHILLSADG-RQWQQAQVP------VQALLT 89
Query: 168 SISFKGKE-GWIVGKPAILLHTSDAGESWE 196
S+ F + GW VG A +LHT D G+SW+
Sbjct: 90 SVYFVDADYGWAVGHDATILHTQDGGKSWQ 119
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 24/104 (23%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR---SIPSAEEEDF----------N 163
L+D+ F D G +G T+DGG +W ++ S E+++F
Sbjct: 131 LMDVYFF--DRQRGMAIGAYGMFYTTQDGGDSWHKAFYLALASEEDQEFLAELAETDPEG 188
Query: 164 Y---------RFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
Y FN + +G E +VG+ + + D GE+W+R+
Sbjct: 189 YLLERESVLPHFNRLMVQGDEILMVGEAGFVAVSQDGGENWQRL 232
>gi|398806352|ref|ZP_10565260.1| BNR/Asp-box repeat protein [Polaromonas sp. CF318]
gi|398088269|gb|EJL78835.1| BNR/Asp-box repeat protein [Polaromonas sp. CF318]
Length = 352
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 43/221 (19%)
Query: 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-K 172
G L +A D L +G R T+L + D G +W +P ++ F
Sbjct: 44 GAATLAVARAGDRL---VAVGERGTVLLSDDHGASWRQAQVP------VQASLAAVCFAD 94
Query: 173 GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGG 232
+ GW G ++L + DAG SW + QL G A A ++ R+
Sbjct: 95 ARTGWAAGHLGVILRSDDAGASWHK-----QLDGVQA---------AELVKQAAQRS--- 137
Query: 233 LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
G +++ + EE + P D+ + +A G ++ T +G
Sbjct: 138 ------GDAKAMAQAERLVEEGADKP-------FFDLEFLDAQRGFAVGAYNLMFATDDG 184
Query: 293 GKTW--IREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
GK+W + + + + +LY V+ + V G G+LL+
Sbjct: 185 GKSWAALGPRLPNPKSLHLYGVR-ARGRTLVVAGEQGLLLR 224
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA---PRSIPSAEEEDFNYRFNSISFKG 173
D+ F+ D GF +G + T DGGK+WA PR +P+ + + + +G
Sbjct: 158 FFDLEFL--DAQRGFAVGAYNLMFATDDGGKSWAALGPR-LPNPK----SLHLYGVRARG 210
Query: 174 KEGWIVGKPAILLHTSDAGESWERI 198
+ + G+ +LL ++D G S+ +
Sbjct: 211 RTLVVAGEQGLLLRSTDGGASFSAL 235
>gi|269925968|ref|YP_003322591.1| hypothetical protein Tter_0852 [Thermobaculum terrenum ATCC
BAA-798]
gi|269789628|gb|ACZ41769.1| hypothetical protein Tter_0852 [Thermobaculum terrenum ATCC
BAA-798]
Length = 279
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 21/200 (10%)
Query: 45 CSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEAL--- 101
C LP + ++ + S + + + A++S+ A+ G Y A S+ +
Sbjct: 86 CPLPDNSMYFATKKNIYFLDSSHNLRLIKPPASVSIEDIAASQDGRYIYIASSQGGIYVS 145
Query: 102 ----SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSA 157
+ W++ P + IA P D G + E+KDGG +W P S P
Sbjct: 146 SDEGNTWQKTGAPQGSEGGITSIAIAPQDSKQ-IYAGVASEIWESKDGGHSWQPISSPGG 204
Query: 158 EEEDFNYRFNS-ISFKGKEGWIVGKPAILLHTSDAGESWERIPL-SSQLPGDMAFWQPHN 215
D N + NS I + G VG L + +G W++IPL +S L +A P +
Sbjct: 205 VVMDINLQPNSNILYAGTS---VG----LWKLTSSG--WQKIPLTTSGLIISVAVGDPES 255
Query: 216 RAVARRIQ--NMGWRADGGL 233
+A Q N+ DGGL
Sbjct: 256 NMLAVLDQQGNVYVSRDGGL 275
>gi|114563394|ref|YP_750907.1| BNR repeat-containing protein [Shewanella frigidimarina NCIMB 400]
gi|114334687|gb|ABI72069.1| BNR repeat protein [Shewanella frigidimarina NCIMB 400]
Length = 336
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED-- 161
W +V PV + L F DD G+ +G T++ T+DGG TW+ + + SAE E
Sbjct: 70 WHQVATPV---LSQLTKVFFFDD-KQGWAVGHDATIIHTQDGGLTWSVQ-MQSAEIEKPL 124
Query: 162 FNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
+ RF + +G VG + T+D G++W++
Sbjct: 125 LDIRF----YSPVDGIAVGAYGLFYRTADGGKTWQQ 156
>gi|124266159|ref|YP_001020163.1| hypothetical protein Mpe_A0966 [Methylibium petroleiphilum PM1]
gi|124258934|gb|ABM93928.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 363
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 279 AAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
A G G++L + +GG W +AA + A+L +V+F++E++G+ +G+ GV+L
Sbjct: 64 AVGERGIVLLSDDGGARW--RQAATPVRASLTAVQFVDERQGWAVGHLGVVLH 114
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + DGG W + P ++ F ++GW VG ++LH+ D
Sbjct: 65 VGERGIVLLSDDGGARWRQAATP------VRASLTAVQFVDERQGWAVGHLGVVLHSGDG 118
Query: 192 GESWERIPLSSQLP 205
GE+W + QLP
Sbjct: 119 GETWTKQLDGLQLP 132
>gi|336314209|ref|ZP_08569129.1| uncharacterized photosystem II stability/assembly factor-like
protein [Rheinheimera sp. A13L]
gi|335881472|gb|EGM79351.1| uncharacterized photosystem II stability/assembly factor-like
protein [Rheinheimera sp. A13L]
Length = 339
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 102 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI-PSAEEE 160
S W ++ PV L + DD HG+ +G T++ T+DGG++W + P ++
Sbjct: 66 SHWNQIQTPVQS---LFTSVYFSDD-KHGWAVGHDATIIATQDGGQSWQLQQFKPETDKP 121
Query: 161 DFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
F+ F G +G + T+D G+SW
Sbjct: 122 LFDILFAD----ANNGIALGAYGMFYRTTDGGKSW 152
>gi|117920230|ref|YP_869422.1| BNR repeat-containing protein [Shewanella sp. ANA-3]
gi|117612562|gb|ABK48016.1| BNR repeat protein [Shewanella sp. ANA-3]
Length = 336
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W++V P L + F+ + L G+ +G T+L T+DGG+TW+ + S E+ F
Sbjct: 68 WQQV--PTPTSAQLTKVFFLNEKL--GWAVGHDATILHTQDGGQTWSLQMQSSEIEKPF- 122
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
+ + ++G +G + T D G++W
Sbjct: 123 --LDVLFLNEQDGMAIGAYGLFYRTHDGGKTW 152
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 250 ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANL 309
+ + +++VP + + V + ++ WA G +L T +GG+TW + + I
Sbjct: 64 LNDTWQQVPTPTSA-QLTKVFFLNEKLGWAVGHDATILHTQDGGQTWSLQMQSSEIEKPF 122
Query: 310 YSVKFINEKKGFVLGNDGVL 329
V F+NE+ G +G G+
Sbjct: 123 LDVLFLNEQDGMAIGAYGLF 142
>gi|392938967|ref|ZP_10304611.1| BNR/Asp-box repeat protein [Thermoanaerobacter siderophilus SR4]
gi|392290717|gb|EIV99160.1| BNR/Asp-box repeat protein [Thermoanaerobacter siderophilus SR4]
Length = 333
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNY----RFNSISFKGKEGWI-----VGKPAILLHTS 189
LL+T DGGKTW +I + D Y R N + GWI + IL T+
Sbjct: 202 LLKTNDGGKTWENVNITGKKNYDGIYSAANRSNMKFYDKNNGWISISNNLAPDPILFRTT 261
Query: 190 DAGESWERIPLS 201
D G++W +I LS
Sbjct: 262 DGGKTWSQIKLS 273
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 93 QPAKSEEALSAWERVYIPVD--PGVVLLDIA-----FVPDDLNHGFLLGTRQTLLETKDG 145
Q KS++ W ++YIPV+ P D F+ +++ +++ +L+TKDG
Sbjct: 98 QLYKSDDGGKTWTQIYIPVNKIPESAYKDAENIVPYFMDNNVWIAWIVPQTLHILKTKDG 157
Query: 146 GKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVG-------KPAILLHTSDAGESWER 197
G W I E + + + F +EGWI+ + LL T+D G++WE
Sbjct: 158 GLHW---DIFKFEIGKYGEVISVLQFVTPEEGWILTTMNGAGMQINYLLKTNDGGKTWEN 214
Query: 198 IPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
+ ++ + D + + + +N GW
Sbjct: 215 VNITGKKNYDGIYSAANRSNMKFYDKNNGW 244
>gi|167039032|ref|YP_001662017.1| hypothetical protein Teth514_0369 [Thermoanaerobacter sp. X514]
gi|256751601|ref|ZP_05492477.1| glycosyl hydrolase BNR repeat-containing protein
[Thermoanaerobacter ethanolicus CCSD1]
gi|300913378|ref|ZP_07130695.1| glycosyl hydrolase BNR repeat-containing protein
[Thermoanaerobacter sp. X561]
gi|307723608|ref|YP_003903359.1| hypothetical protein Thet_0415 [Thermoanaerobacter sp. X513]
gi|166853272|gb|ABY91681.1| hypothetical protein Teth514_0369 [Thermoanaerobacter sp. X514]
gi|256749551|gb|EEU62579.1| glycosyl hydrolase BNR repeat-containing protein
[Thermoanaerobacter ethanolicus CCSD1]
gi|300890063|gb|EFK85208.1| glycosyl hydrolase BNR repeat-containing protein
[Thermoanaerobacter sp. X561]
gi|307580669|gb|ADN54068.1| hypothetical protein Thet_0415 [Thermoanaerobacter sp. X513]
Length = 333
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNY----RFNSISFKGKEGWI-----VGKPAILLHTS 189
LL+T DGGKTW +I + D Y R N + GWI + IL T+
Sbjct: 202 LLKTNDGGKTWENVNITGKKNYDGIYSAANRSNMKFYDKNNGWISISNNLAPDPILFRTT 261
Query: 190 DAGESWERIPLS 201
D G++W +I LS
Sbjct: 262 DGGKTWSQIKLS 273
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 93 QPAKSEEALSAWERVYIPVD--PGVVLLDIA-----FVPDDLNHGFLLGTRQTLLETKDG 145
Q KS++ W ++YIPVD P D F+ +++ +++ +L+T DG
Sbjct: 98 QLYKSDDGGKTWTQIYIPVDKIPESAYKDAENIVPYFMDNNVWIAWIVPQTLHILKTTDG 157
Query: 146 GKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVG-------KPAILLHTSDAGESWER 197
G W I E + + + F +EGWI+ + LL T+D G++WE
Sbjct: 158 GLNW---DIFKFEIGKYGEAISVLQFVTPEEGWILTTMNGAGMQINYLLKTNDGGKTWEN 214
Query: 198 IPLSSQLPGDMAFWQPHNRAVARRIQNMGW 227
+ ++ + D + + + +N GW
Sbjct: 215 VNITGKKNYDGIYSAANRSNMKFYDKNNGW 244
>gi|374368407|ref|ZP_09626457.1| transporter [Cupriavidus basilensis OR16]
gi|373100006|gb|EHP41077.1| transporter [Cupriavidus basilensis OR16]
Length = 361
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP--RSIPSAEEEDFNYRFNSISFKGK 174
LD+ V +D ++G T DGGK W P IP+ + + ++ G+
Sbjct: 165 FLDLYVVDEDTV--MVVGAYNLAFRTTDGGKHWVPWQDRIPNPK----SLHLYGVAGAGR 218
Query: 175 EGWIVGKPAILLHTSDAGESWERI--PLSSQLPGDMAFWQPHNRAVARRIQNMGWRA 229
+ +I G+ LLH++D GES+ + P S G + QP +A ++ +R+
Sbjct: 219 DLYIAGEKGTLLHSADGGESFGTLQSPYSGTFFGVLV--QPDGSVIAYGLRGNSYRS 273
>gi|358636915|dbj|BAL24212.1| hypothetical protein AZKH_1899 [Azoarcus sp. KH32C]
Length = 336
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 85/215 (39%), Gaps = 51/215 (23%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSA------------------- 157
L D+AF D G +G T++ + DGG +WAP +P
Sbjct: 49 LFDLAF---DGQQGIAVGAFGTIVGSDDGGASWAPLVVPPKTPVLLGATIRGGHCLAVGQ 105
Query: 158 -----EEEDF----------NYRFNSISFKGK-EGWIVGKPAILLHTSDAGESWERIPLS 201
+D N R ++S G+ + + VG +L ++D G +W+ + +
Sbjct: 106 LGTILAADDCRQWRPVASVGNARLMAVSLNGRGQAYAVGAFGTVLRSTDGGHAWQPVTID 165
Query: 202 SQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQS 261
G+ +PH V AD G +V G+ L G+ + QS
Sbjct: 166 WTGIGEGGA-EPHLYDVH--------VADDGAITIVGEFGVILRSTDGVRWQVVHRGEQS 216
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
FG+ G S A+A G +G +L +++GG +W
Sbjct: 217 L-FGLAQAGDGS---AYAVGQAGTVLASSDGGVSW 247
>gi|375108548|ref|ZP_09754803.1| BNR repeat-containing protein [Alishewanella jeotgali KCTC 22429]
gi|374571339|gb|EHR42467.1| BNR repeat-containing protein [Alishewanella jeotgali KCTC 22429]
Length = 349
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI 315
+VPVQ+ + V + D WA G +L T +GGK+W ++ + L V F
Sbjct: 81 QVPVQAL---LTSVYFVDADYGWAVGHDATILHTQDGGKSWQIQQFLPQLDKPLMDVYFF 137
Query: 316 NEKKGFVLGNDGV 328
+ ++G +G G+
Sbjct: 138 DRQRGMAIGAYGM 150
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 109 IPVDPGVVLLDIAFVPDDLNHGFL-LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFN 167
+P+ +L D+ +P GF +G R +L + DG + W +P
Sbjct: 40 VPLAERSLLTDVVAIP---TAGFAAVGERGHILLSADG-RQWQQAQVP------VQALLT 89
Query: 168 SISFKGKE-GWIVGKPAILLHTSDAGESWE 196
S+ F + GW VG A +LHT D G+SW+
Sbjct: 90 SVYFVDADYGWAVGHDATILHTQDGGKSWQ 119
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR---SIPSAEEEDF----------N 163
L+D+ F D G +G T+DGG +W ++ S E+++F +
Sbjct: 131 LMDVYFF--DRQRGMAIGAYGMYYTTQDGGDSWHKAFYLALASEEDQEFLAELAETDPES 188
Query: 164 Y---------RFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
Y FN + +G E +VG+ + + D GE+W+R+
Sbjct: 189 YLLERESVLPHFNRLMVQGDEILMVGEAGFVAVSQDGGENWQRL 232
>gi|226226669|ref|YP_002760775.1| hypothetical protein GAU_1263 [Gemmatimonas aurantiaca T-27]
gi|226089860|dbj|BAH38305.1| hypothetical protein GAU_1263 [Gemmatimonas aurantiaca T-27]
Length = 355
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 44/228 (19%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLL----GTRQTLLETKDGGKTWAP 151
++++ + W+R P + D+ V D + ++L GT + T DGG TWA
Sbjct: 64 RTQDGGTTWQRRLTPAGDSLQFRDVYAV--DADTAWVLSIGNGTASRIYRTSDGGSTWAL 121
Query: 152 RSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAI----LLHTSDAGESWERIP---LSSQ 203
+ I D ++ +SF EG + G A +L T++ G +W +P + +
Sbjct: 122 QFI----NRDSAAFYDCLSFGTAAEGIVFGDAAAGRTHILRTTNGGGTWSLLPERAVPAP 177
Query: 204 LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVP----- 258
LP + AF V + A G G LF S G T E P
Sbjct: 178 LPSEGAF-AASGLCVTHADARTAYIATG-----APGARLFKSSDAGATWSVLETPLVRGT 231
Query: 259 ---------VQSRGFGI-LDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
V +RG + D+ D + + V+ TT+GG+TW
Sbjct: 232 VAGLTGLSFVGNRGVAVAADINRLRTDTS-----TNVVGVTTDGGRTW 274
>gi|389808285|ref|ZP_10204695.1| BNR repeat glycosyl hydrolase-like protein [Rhodanobacter
thiooxydans LCS2]
gi|388443163|gb|EIL99322.1| BNR repeat glycosyl hydrolase-like protein [Rhodanobacter
thiooxydans LCS2]
Length = 328
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
LL ++DGG +W+ + N SI+F G+EG +VG ++D G+SW+ +
Sbjct: 191 LLHSRDGGVSWSSVQLG-------NESLQSIAFAGEEGVVVGNRGQAFRSADGGKSWQPV 243
Query: 199 P 199
P
Sbjct: 244 P 244
>gi|260892937|ref|YP_003239034.1| hypothetical protein Adeg_1052 [Ammonifex degensii KC4]
gi|260865078|gb|ACX52184.1| hypothetical protein Adeg_1052 [Ammonifex degensii KC4]
Length = 412
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 26/179 (14%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFN--YRFNSISFKGKEGWIV----GKPAILLH 187
G R L T D G TW R +P E + YR + +++ GK I LH
Sbjct: 123 GNRFALYATSDAGATW--REVPGTEATNSCPPYRVVPDILNPERAYLLPVSPGKAMISLH 180
Query: 188 ----TSDAGESWERIPLSSQLP-GDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL 242
T D G++WE L ++P D F+ P + +++I WR W G+
Sbjct: 181 HFRETRDGGKTWEERSLPGKIPAADGFFFDPGD---SKKI--WAWRGSMDGW-----AGV 230
Query: 243 FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKA 301
SK G+T + ++P ++R G + Y + G V+ + NG +REK
Sbjct: 231 QYSKDGGVTWQSLQIPAENRIHGAILNPYTGEI---IVTGRQVISRWCNGKGEDLREKC 286
>gi|325108603|ref|YP_004269671.1| photosystem II stability/assembly factor [Planctomyces brasiliensis
DSM 5305]
gi|324968871|gb|ADY59649.1| uncharacterized photosystem II stability/assembly factor-like
protein [Planctomyces brasiliensis DSM 5305]
Length = 1077
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKP-AILLHTSDAGESWER 197
L+ GG W P E + Y F +++ KG W+ G P + + + D G +W
Sbjct: 259 LVRYSPGGAAWQDSPGPLPAELNHLYDFAAVARKGDSVWLAGHPGSAIWRSDDGGNTWRM 318
Query: 198 IPLSSQLP-GDMAFWQPHNRAVARRIQNMGWRADGG 232
P S P ++F + + + W ADGG
Sbjct: 319 APTHSTAPLNSISFGDAEHGCAVGELGTILWTADGG 354
>gi|425468459|ref|ZP_18847477.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9701]
gi|389884880|emb|CCI34860.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9701]
Length = 775
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 15/217 (6%)
Query: 83 SLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLL-DIAFVPDDLNHGFLLGTRQTLLE 141
++AA GL + +E+ W ++ P L+ +A P++ F L
Sbjct: 142 NIAAAVGLEKGVYLTEDGGKNWSNIF----PTTALITSLAITPNNPGRIFFGDEEGKLYS 197
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP-- 199
+ DGGKTW +P+ F+ + K ++ K A + T D G++++ +
Sbjct: 198 SSDGGKTWQNLPLPANVGAVDTIAFSPNLDRDKTFFVGTKEAGIFKTVDDGKTFQAVNEG 257
Query: 200 LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPV 259
+ ++ D+A + R + + W G+++ GG + G+T++ +
Sbjct: 258 IKDKIIEDIAISPDYARNSTLYV--ITWY--DGMYVSQDGGKTWTKMSEGLTKDTQADDY 313
Query: 260 QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ F L + QD + G +G L KTT+ GK W
Sbjct: 314 KVPHFIDLKI---VQDTMFLGGFNG-LFKTTDSGKQW 346
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 100/240 (41%), Gaps = 35/240 (14%)
Query: 89 GLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFV---PDDLNHGFLLGTRQTLLETKDG 145
G+Y KSE+A +W++V + G+ I FV P D N +G + + T+DG
Sbjct: 108 GIY----KSEDAGESWQKV----NQGLATNFINFVQIAPSDPNIAAAVGLEKGVYLTEDG 159
Query: 146 GKTWAPRSIPSAEEEDFNYRFNS---ISFKGKEGWIVGKPAILLHTSDAGESWERIPLSS 202
GK W+ +A N+ I F +EG L +SD G++W+ +PL +
Sbjct: 160 GKNWSNIFPTTALITSLAITPNNPGRIFFGDEEGK-------LYSSSDGGKTWQNLPLPA 212
Query: 203 QLPG-DMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQS 261
+ D + P+ + R + G++ V G F + GI ++ E S
Sbjct: 213 NVGAVDTIAFSPN---LDRDKTFFVGTKEAGIFKTVDDGKTFQAVNEGIKDKIIEDIAIS 269
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR--EKAADNIAANLYSV-KFINEK 318
+ Y W G + + +GGKTW + E + A+ Y V FI+ K
Sbjct: 270 PDYARNSTLYVI---TWYDG----MYVSQDGGKTWTKMSEGLTKDTQADDYKVPHFIDLK 322
>gi|374323969|ref|YP_005077098.1| hypothetical protein HPL003_20705 [Paenibacillus terrae HPL-003]
gi|357202978|gb|AET60875.1| hypothetical protein HPL003_20705 [Paenibacillus terrae HPL-003]
Length = 416
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 20/99 (20%)
Query: 119 DIAFVPDDLNHGFLL-----GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
DI+F D HG+++ T +L T DGG++W ++PS E N +
Sbjct: 122 DISFT--DSRHGWVVRQNLDKTATVILRTADGGQSWDISALPSGEHVSAIQYVNPST--- 176
Query: 174 KEGWIVG--------KPAILLHTSDAGESWERIPLSSQL 204
GWI+ + +L HT+D G +W+++ SS +
Sbjct: 177 --GWIMASTNLNEQDQQKLLYHTTDGGATWKKVAQSSGM 213
>gi|88860165|ref|ZP_01134804.1| putative orphan protein [Pseudoalteromonas tunicata D2]
gi|88818159|gb|EAR27975.1| putative orphan protein [Pseudoalteromonas tunicata D2]
Length = 331
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 97/252 (38%), Gaps = 46/252 (18%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W + +PV +L + F+ D HG+ G T+L T+DGG TW + + + +
Sbjct: 65 WLQAAVPVQT--LLTSVFFI--DAEHGWATGHDATILATQDGGLTWQIQH----NQPELD 116
Query: 164 YRFNSISFKGK-EGWIVGKPAILLHTSDAGESWE-RIPLSSQLPGDMAFWQ--------- 212
I FK K G +G + T D G W+ S D F
Sbjct: 117 KPLLDILFKDKSNGIAIGAYGLFYRTRDGGMHWQSEFQTSLLFDEDKDFLAELKETNPEG 176
Query: 213 ---------PH-NRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT-EEFEEVPVQS 261
PH N+ A + Q L ++ G L S GIT E +E+ S
Sbjct: 177 YLNEIQAILPHLNQVTATKDQ---------LIMVGEQGLLATSLDFGITWERLDEIYPGS 227
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGF 321
DV + AAG G + +T+ G+ W ++ DN + + +
Sbjct: 228 ----FFDVKELINGDWLAAGLRGNVFLSTDQGENW---QSLDNSSHATINKIIVTNTGAL 280
Query: 322 VLGNDGVLLQYL 333
+L N+GV++ Y+
Sbjct: 281 LLANNGVMVHYV 292
>gi|88800061|ref|ZP_01115631.1| Glycosyl hydrolase [Reinekea blandensis MED297]
gi|88777187|gb|EAR08392.1| Glycosyl hydrolase [Reinekea blandensis MED297]
Length = 654
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 62/172 (36%), Gaps = 40/172 (23%)
Query: 171 FKGKEGWIVGKPAILLHTSDAGESWERIPLS---------SQLPGDMAFWQPHNRAVARR 221
EG I G LL ++DAG +W I LS G + + R
Sbjct: 162 LNNTEGIITGSQGALLVSNDAGATWNPIDLSLATDLNRPSQSSTGVIVITGQDGTLLVRT 221
Query: 222 IQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAG 281
N WR L + +F S+G G+ G
Sbjct: 222 AANASWRQVNNLATVPLQPAVFNSQGIGVI----------------------------VG 253
Query: 282 GSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
SG LL + NGG++W K N +L+ F ++++ V G+DG LL L
Sbjct: 254 KSGTLLLSDNGGESW--RKLTLNTGNDLHWATF-DDRRWLVAGDDGTLLMSL 302
>gi|168702149|ref|ZP_02734426.1| glycosyl hydrolase, BNR repeat-containing protein [Gemmata
obscuriglobus UQM 2246]
Length = 340
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 37/186 (19%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPA----ILLHT 188
G + +T DGGKTW + E + F ++I+F K G G P LL T
Sbjct: 95 GADSRIYKTTDGGKTWV-LQFKNPEPQGF---LDAIAFWDEKTGIAFGDPVNGRFQLLTT 150
Query: 189 SDAGESWERIPLSSQ---LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS 245
+D+G +WE +P S+ L G+ AF +AR +++ W GG + R F S
Sbjct: 151 TDSGATWEPLPEKSRPEALAGEGAFAASGTCLIARGEKDV-WFCTGGA-KVAR---AFHS 205
Query: 246 KGTGITEEFEEVP--------------VQSRGFGILDVG-YRSQDEAWAAGGSGVLLKTT 290
G T E+P + R G++ G YR D+ +G + T+
Sbjct: 206 TDRGQTWTVVELPLLAGGASAGAFGLAFRDRDHGVIVGGDYRKPDDT-----AGTVAVTS 260
Query: 291 NGGKTW 296
+GGKTW
Sbjct: 261 DGGKTW 266
>gi|227539672|ref|ZP_03969721.1| oxidoreductase [Sphingobacterium spiritivorum ATCC 33300]
gi|227240314|gb|EEI90329.1| oxidoreductase [Sphingobacterium spiritivorum ATCC 33300]
Length = 344
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 82/211 (38%), Gaps = 28/211 (13%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAI----LLHT 188
G+ +L T DGGK W I + E + + + F K G G P LL++
Sbjct: 95 GSPAVILRTSDGGKNW----ISTYENNHPDIFLDGMDFWDQKRGIAFGDPIDGRLQLLYS 150
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG--GGLFLSK 246
SD G+SW I S+ L M + A I + DG +W+ G ++ S
Sbjct: 151 SDKGKSWNDI--SANLKQVMKTGEASFAASGSTICT---QPDGNVWIATGGSVSHIYFSG 205
Query: 247 GTGITEEFEEVPVQ--SRGFGILDVGYRSQDEAWAAGGSGV--------LLKTTNGGKTW 296
G E P+ G+ + + GG +L TT+GGK W
Sbjct: 206 DYGQHWEQYACPITQGKSTTGVFSIAFIDHMTGVVVGGDYAQDKENVNNILLTTDGGKNW 265
Query: 297 IREKAADNIAANLYSVKFINEKKGFVLGNDG 327
A ++ SV +IN+++ F G G
Sbjct: 266 --TAPAKPVSGFRSSVVYINKQRLFATGTSG 294
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV--GKPAILLHTSDA 191
G+ T+ ++ DGGK+W + A E +++R + +F KE IV G PA++L TSD
Sbjct: 50 GSNGTVGKSLDGGKSW--NWVNPAGFESYDFR-DIQAFSAKEAVIVNAGSPAVILRTSDG 106
Query: 192 GESW 195
G++W
Sbjct: 107 GKNW 110
>gi|392951501|ref|ZP_10317056.1| hypothetical protein WQQ_11280 [Hydrocarboniphaga effusa AP103]
gi|391860463|gb|EIT70991.1| hypothetical protein WQQ_11280 [Hydrocarboniphaga effusa AP103]
Length = 318
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHTSDAG 192
G R +L + D G +W +P+ + ++SF E GW VG ++L + D G
Sbjct: 16 GERGIVLLSDDNGASWRQARVPA------SVTLTALSFPTPETGWAVGHAGLILRSDDGG 69
Query: 193 ESWERI 198
ESW R+
Sbjct: 70 ESWSRV 75
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLD+ F+ + HGF++G + ET+D G+ W R A + +
Sbjct: 118 LLDVGFLTPE--HGFVIGAYGAIFETRDAGRHWQSRR--DALDNPRGKHLYRLYAAADRL 173
Query: 177 WIVGKPAILLHTSDAGESWERI 198
+I G+ L +SD G+ ++ +
Sbjct: 174 YIAGEQGALFESSDEGDHFQAL 195
>gi|113970018|ref|YP_733811.1| BNR repeat-containing protein [Shewanella sp. MR-4]
gi|113884702|gb|ABI38754.1| BNR repeat protein [Shewanella sp. MR-4]
Length = 336
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W++V P L + F+ + L G+ +G T+L T+DGG+TW+ + S E+ F
Sbjct: 68 WQQV--PTPTSAQLTKVFFLNEKL--GWAVGHDATILHTQDGGQTWSLQIQSSEIEKPF- 122
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
+ + ++G +G + T D G++W
Sbjct: 123 --LDVLFLNEQDGMAIGAYGLFYRTHDGGKTW 152
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 250 ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANL 309
+ + +++VP + + V + ++ WA G +L T +GG+TW + + I
Sbjct: 64 LNDTWQQVPTPTSA-QLTKVFFLNEKLGWAVGHDATILHTQDGGQTWSLQIQSSEIEKPF 122
Query: 310 YSVKFINEKKGFVLGNDGVL 329
V F+NE+ G +G G+
Sbjct: 123 LDVLFLNEQDGMAIGAYGLF 142
>gi|310642267|ref|YP_003947025.1| hypothetical protein [Paenibacillus polymyxa SC2]
gi|309247217|gb|ADO56784.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
Length = 416
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 126 DLNHGFLLGTRQT---LLETKDGGKTWAPRSIPSAEEEDFNYRF---NSISF-KGKEGWI 178
D N G + G L +T DGGKTW +I +E F + ISF + GW+
Sbjct: 76 DNNKGLVWGVTHNELRLYDTHDGGKTW--NNISPSENVQFQDKLEYGKDISFTDSRHGWV 133
Query: 179 VGK-----PAILLHTSDAGESWERIPLSS 202
V + ++L TSD G+SW+ L S
Sbjct: 134 VRQNLDQTATVILRTSDGGQSWDVSALPS 162
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 22/98 (22%)
Query: 119 DIAFVPDDLNHGFLL-----GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
DI+F D HG+++ T +L T DGG++W ++PS + +SI +
Sbjct: 122 DISFT--DSRHGWVVRQNLDQTATVILRTSDGGQSWDVSALPSGDH------VSSIQYVN 173
Query: 174 -KEGWIVG--------KPAILLHTSDAGESWERIPLSS 202
GWI+ + +L HT+D G +W ++ SS
Sbjct: 174 PTTGWIMAYIKLNEQDQQKMLYHTTDGGATWNKVAQSS 211
>gi|386041223|ref|YP_005960177.1| VPS10 domain-containing receptor SorCS3 [Paenibacillus polymyxa M1]
gi|343097261|emb|CCC85470.1| VPS10 domain-containing receptor SorCS3 [Paenibacillus polymyxa M1]
Length = 424
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 126 DLNHGFLLGTRQT---LLETKDGGKTWAPRSIPSAEEEDFNYRF---NSISF-KGKEGWI 178
D N G + G L +T DGGKTW +I +E F + ISF + GW+
Sbjct: 84 DNNKGLVWGVTHNELRLYDTHDGGKTW--NNISPSENVQFQDKLEYGKDISFTDSRHGWV 141
Query: 179 VGK-----PAILLHTSDAGESWERIPLSS 202
V + ++L TSD G+SW+ L S
Sbjct: 142 VRQNLDQTATVILRTSDGGQSWDVSALPS 170
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 22/98 (22%)
Query: 119 DIAFVPDDLNHGFLL-----GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
DI+F D HG+++ T +L T DGG++W ++PS + +SI +
Sbjct: 130 DISFT--DSRHGWVVRQNLDQTATVILRTSDGGQSWDVSALPSGDH------VSSIQYVN 181
Query: 174 -KEGWIVG--------KPAILLHTSDAGESWERIPLSS 202
GWI+ + +L HT+D G +W ++ SS
Sbjct: 182 PTTGWIMAYIKLNEQDQQKMLYHTTDGGATWNKVAQSS 219
>gi|73538518|ref|YP_298885.1| BNR repeat-containing glycosyl hydrolase [Ralstonia eutropha
JMP134]
gi|72121855|gb|AAZ64041.1| Glycosyl hydrolase, BNR repeat protein [Ralstonia eutropha JMP134]
Length = 324
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 155 PSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER--IPLSSQLPGDMAFWQ 212
P E D Y ++ G W G A +L+++DAG +W R +P L D+A W
Sbjct: 39 PLIERGDVFYGIATLPDGGL--WAAGSNAKILYSADAGTNWRRQVVPGHEALQ-DIAAWD 95
Query: 213 PHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYR 272
RAVA + N G +F + G + + P + G ++ V
Sbjct: 96 SR-RAVA--VGNEG--------------VVFTTDDGGHSWTAAQTPKSAFGNKLMRVQAS 138
Query: 273 SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDG 327
AWA G GVL+++ + GK W ++ A N + I ++G ++G G
Sbjct: 139 QDGSAWAVGSGGVLMRSRDYGKRWESVGQGEDAAWNGIA---IQGRRGSIVGEFG 190
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 31/235 (13%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S +A + W R +P L DIA D +G + T DGG +W P
Sbjct: 70 SADAGTNWRRQVVPGHE--ALQDIAAW--DSRRAVAVGNEGVVFTTDDGGHSWTAAQTPK 125
Query: 157 AEEEDFNYRFNSI-SFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215
+ F + + + + W VG +L+ + D G+ WE + G+ A W
Sbjct: 126 SA---FGNKLMRVQASQDGSAWAVGSGGVLMRSRDYGKRWESVG-----QGEDAAWNG-- 175
Query: 216 RAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD 275
I G R ++ G + ++ G + PV+ ++ V +
Sbjct: 176 ------IAIQGRRGS----IVGEFGRIRITTDAGDSWTSVASPVKHS---LMSVRFNEAG 222
Query: 276 EAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+A A G G +L + +GG TW +A + +L+ V + + K+ +G+ GV+L
Sbjct: 223 QAVAVGLHGTVLVSDDGGATWKPAQATTD--EDLFDVAW-DGKRWIAVGDKGVVL 274
>gi|410631109|ref|ZP_11341790.1| glycosyl hydrolase, BNR repeat [Glaciecola arctica BSs20135]
gi|410149311|dbj|GAC18657.1| glycosyl hydrolase, BNR repeat [Glaciecola arctica BSs20135]
Length = 301
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 30/231 (12%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W R + P L+DIA PD L + + G W +P+ E+
Sbjct: 46 WSRTILAGMPS--LIDIASCPD--QRLIALSFDNQVWVSNINGDDWISIEVPTQEQ---- 97
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQ 223
W+ G + LH+++ G++W+ L + AVA
Sbjct: 98 -LMTIDCAPNGNWWVAGGFSTFLHSANDGQNWQTTSLDEDAIITNLVFISEQDAVAT--- 153
Query: 224 NMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS 283
A+ G+ L+ GG+ + +EF P + + + E W G +
Sbjct: 154 -----AEFGMILVTENGGISWDLIGFLPDEF--FPHSTH--------FATTAEGWVGGLN 198
Query: 284 GVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
G + T +GG+ W+R+ A ++ +Y +++ + LG++ +++ G
Sbjct: 199 GFVYHTKDGGRNWLRQSADSSVP--IYQFVQVDDAL-YALGDNATVMKLAG 246
>gi|114047253|ref|YP_737803.1| BNR repeat-containing protein [Shewanella sp. MR-7]
gi|113888695|gb|ABI42746.1| BNR repeat protein [Shewanella sp. MR-7]
Length = 336
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
V + ++ WA G +L T +GG+TW + + +I V F+NE+ G +G G+
Sbjct: 82 VFFLNEKLGWAVGHDATILHTQDGGQTWSLQMQSRDIEKPFLDVLFLNEQDGMAIGAYGL 141
Query: 329 L 329
Sbjct: 142 F 142
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W++V P L + F+ + L G+ +G T+L T+DGG+TW+ + E+ F
Sbjct: 68 WQQV--PTPTSAQLTKVFFLNEKL--GWAVGHDATILHTQDGGQTWSLQMQSRDIEKPF- 122
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
+ + ++G +G + T D G++W
Sbjct: 123 --LDVLFLNEQDGMAIGAYGLFYRTHDGGKTW 152
>gi|51891925|ref|YP_074616.1| BNR repeat-containing protein [Symbiobacterium thermophilum IAM
14863]
gi|51855614|dbj|BAD39772.1| BNR domain protein [Symbiobacterium thermophilum IAM 14863]
Length = 344
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 35/201 (17%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAIL 185
D HG++ G + T DGG+ W PS E R + + GW + + +
Sbjct: 32 DERHGWI-GAADGIWYTDDGGRKWT-HQFPSQEA---VIRLGFV--DPQNGWALTQSSAA 84
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS 245
L T + G W ++ +PG + R ++ A + G GL +S
Sbjct: 85 LRTQNGGADW----ITLDVPG-----------ASLRAVDLVSPAHA---VATDGNGLLVS 126
Query: 246 KGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIRE---KAA 302
+ G T + P+ + D+ + S++E WAAG G + T +GG+TW +
Sbjct: 127 RDGGKTWDRSRPPLP-----LADLDFVSEEEGWAAG-EGQVWHTRDGGETWSAQLTLPEP 180
Query: 303 DNIAANLYSVKFINEKKGFVL 323
D + + V+F +E G+VL
Sbjct: 181 DRWLGDTF-VRFPSETSGWVL 200
>gi|423095037|ref|ZP_17082833.1| BNR domain protein [Pseudomonas fluorescens Q2-87]
gi|397884621|gb|EJL01104.1| BNR domain protein [Pseudomonas fluorescens Q2-87]
Length = 367
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 107 VYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRF 166
+ +P VLLD+A + +G R +L + D G++W S+P +
Sbjct: 39 MVVPAAQKSVLLDLARAGTRV---VAVGERGLVLLSDDNGQSWRQASVP------VSVSL 89
Query: 167 NSISF-KGKEGWIVGKPAILLHTSDAGESW 195
++ F ++GW VG ++L T D GE W
Sbjct: 90 TAVQFVDAQKGWAVGHSGVVLATRDGGEHW 119
>gi|421523165|ref|ZP_15969796.1| hypothetical protein PPUTLS46_15058 [Pseudomonas putida LS46]
gi|402752986|gb|EJX13489.1| hypothetical protein PPUTLS46_15058 [Pseudomonas putida LS46]
Length = 376
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 174 KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL 233
++GW VG ++LH+ D G SW++ L + D+A + + D L
Sbjct: 93 QQGWAVGHDGVILHSVDGGRSWQK-QLDGRAINDLAKAWAESEVTRLETASAAAADDEAL 151
Query: 234 WLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGG 293
+ L +E P +LDV +++ E WA G G+ L T +GG
Sbjct: 152 STALESAQFALEDIQAGSEYGPSRP-------LLDVWFKNAKEGWAVGAYGMFLHTVDGG 204
Query: 294 KTW 296
+ W
Sbjct: 205 QHW 207
>gi|295700280|ref|YP_003608173.1| BNR repeat-containing glycosyl hydrolase [Burkholderia sp.
CCGE1002]
gi|295439493|gb|ADG18662.1| BNR repeat-containing glycosyl hydrolase [Burkholderia sp.
CCGE1002]
Length = 380
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 109 IPVDPGVVLL-DIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA-PRSIPSAEEEDF--NY 164
P P V + +IAF P + ++ + LL+T D GKTW PRS S ++ + N+
Sbjct: 148 FPPPPHVAHVKNIAFHPAEPETLYICIEQGALLKTVDDGKTWTEPRSYESENDKFYHDNH 207
Query: 165 RFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG--DMAFWQPHNRAV 218
R K+ ++ G L +++DAGE+W + L G D F P N V
Sbjct: 208 RVLVRPSNPKQMFMCGGEG-LHYSADAGETWVHLMTRQDLIGYPDAMFIDPRNENV 262
>gi|332304782|ref|YP_004432633.1| glycosyl hydrolase [Glaciecola sp. 4H-3-7+YE-5]
gi|332172111|gb|AEE21365.1| glycosyl hydrolase [Glaciecola sp. 4H-3-7+YE-5]
Length = 369
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHT 188
HGF +G LL+TKDGG +W P + Y ++ +G++ ++ G+ L
Sbjct: 184 HGFAVGAFGLLLKTKDGGLSWQPW--MEKANNAWAYHIYAVQQQGEDVYLAGERGFLRRL 241
Query: 189 SDAGESWERI 198
S+ +S+ERI
Sbjct: 242 SEDKDSFERI 251
>gi|408682122|ref|YP_006881949.1| putative oxidoreductase [Streptomyces venezuelae ATCC 10712]
gi|328886451|emb|CCA59690.1| putative oxidoreductase [Streptomyces venezuelae ATCC 10712]
Length = 369
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 67 NRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSA-WERVYIPVDPGVVLLDIAFVPD 125
RR +L+++LAA E PA + + +A WE D L P
Sbjct: 4 TRRMMSVGMIGAALTLTLAAPARAGETPAAATDRNAAGWELTPTGTDARFRGL----APV 59
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV----GK 181
D + G++ T+L T DGG++W S P A E +F + +F + ++ G+
Sbjct: 60 DRRTAWAAGSKGTVLRTTDGGRSWRDVSPPGAGELEFR---DVEAFDARRAVVLAIGEGE 116
Query: 182 PAILLHTSDAGESW 195
+ +L T D G +W
Sbjct: 117 ASRVLRTEDGGATW 130
>gi|192361316|ref|YP_001983371.1| BNR/Asp-box repeat domain-containing protein [Cellvibrio japonicus
Ueda107]
gi|190687481|gb|ACE85159.1| BNR/Asp-box repeat domain protein [Cellvibrio japonicus Ueda107]
Length = 728
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 23/203 (11%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEE----EDFNYRFNSISFKGKEGWIVGKPAILLHTS 189
G T++ ++D G++W ++ D Y +S + E W K ++
Sbjct: 462 GPTGTIMRSRDDGRSWQTVYYSEFDQGEAFTDLLYDSHSGNLFALEAWGRHKRSV----- 516
Query: 190 DAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLV-RGGGLFLSKGT 248
D G WE + + + AFWQ I M + LW+ RGG + S
Sbjct: 517 DGGLQWESVSAAMEQTDTQAFWQ---------ITAMPLASSPSLWMAAGRGGLVASSDDQ 567
Query: 249 GITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAAN 308
G + + +GI + + + G +G L + + GK W ++AA+
Sbjct: 568 GSSWHYHSSDPSIDWYGIF--AHVDSRQWFLLGSNGALQVSQDNGKHW--RVLETHVAAD 623
Query: 309 LYSVKFINEKKGFVLGNDGVLLQ 331
L + +N++ LG +GV+L+
Sbjct: 624 LRRMIAVNQQVLLALGGEGVILR 646
>gi|294816035|ref|ZP_06774678.1| Putative oxidoreductase [Streptomyces clavuligerus ATCC 27064]
gi|326444377|ref|ZP_08219111.1| oxidoreductase [Streptomyces clavuligerus ATCC 27064]
gi|294328634|gb|EFG10277.1| Putative oxidoreductase [Streptomyces clavuligerus ATCC 27064]
Length = 395
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
G G +E R G+ VG+R+ AWAAG G +L+TT+GG++W
Sbjct: 69 GAGSVWSLKETGTDVRLRGLAAVGHRT---AWAAGSRGTVLRTTDGGRSWRNVAPPGAAG 125
Query: 307 ANLYSVKFINEKKGFVL 323
L V+ +++ VL
Sbjct: 126 LELRDVEAFDDRTAVVL 142
>gi|104781655|ref|YP_608153.1| hypothetical protein PSEEN2551 [Pseudomonas entomophila L48]
gi|95110642|emb|CAK15353.1| conserved hypothetical protein; BNR domain protein [Pseudomonas
entomophila L48]
Length = 327
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
VLL + F D HG ++G T +GG TW +++ EE D ++ FN + F+ +
Sbjct: 118 VLLSVLFT--DARHGVVVGAYGYAARTANGGVTW--QALQVGEEGD-DFHFNQV-FQAAD 171
Query: 176 G--WIVGKPAILLHTSDAGESWERI 198
+IVG+ ++D G+SW+ +
Sbjct: 172 ASLFIVGEAGHAYRSTDQGDSWQAL 196
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 253 EFEEVPVQSRGFGILD-VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYS 311
+ VPV+ G+L V + + WA G GVLL + +GG+ W +K + L S
Sbjct: 67 QARSVPVE----GLLTAVSFIDSQQGWAVGHGGVLLHSVDGGQDWTLQKHLEGRPV-LLS 121
Query: 312 VKFINEKKGFVLGNDG 327
V F + + G V+G G
Sbjct: 122 VLFTDARHGVVVGAYG 137
>gi|373957536|ref|ZP_09617496.1| oxidoreductase [Mucilaginibacter paludis DSM 18603]
gi|373894136|gb|EHQ30033.1| oxidoreductase [Mucilaginibacter paludis DSM 18603]
Length = 356
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV--GKPAILLHTSDA 191
G++ + TKD GKTW I E+ DF + +F KE ++ G PA++L T D
Sbjct: 54 GSKGYVACTKDAGKTWNWMQIKGFEQSDFR---DIEAFSAKEAVVMSSGTPAVILKTLDG 110
Query: 192 GESWE 196
G +W+
Sbjct: 111 GLNWQ 115
>gi|421528370|ref|ZP_15974934.1| hypothetical protein PPS11_07735 [Pseudomonas putida S11]
gi|402214136|gb|EJT85469.1| hypothetical protein PPS11_07735 [Pseudomonas putida S11]
Length = 139
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG 324
V + WA G G +L TT+GG++W ++ A L++V F N ++G +G
Sbjct: 71 VSFVDAKRGWAVGHWGAILATTDGGESWQVQRLATEEDRPLFAVHFFNARQGVAVG 126
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 133 LGTRQTLLETKDGGKTW-APRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSD 190
+G +L + D GK W RS+P + +SF K GW VG +L T+D
Sbjct: 40 VGDHGVVLLSDDQGKQWRQARSVP------LSTPLTGVSFVDAKRGWAVGHWGAILATTD 93
Query: 191 AGESWERIPLSSQ 203
GESW+ L+++
Sbjct: 94 GGESWQVQRLATE 106
>gi|255535146|ref|YP_003095517.1| hypothetical protein FIC_01005 [Flavobacteriaceae bacterium
3519-10]
gi|255341342|gb|ACU07455.1| hypothetical protein FIC_01005 [Flavobacteriaceae bacterium
3519-10]
Length = 420
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 22/159 (13%)
Query: 62 SSSSLNRRQFVSQTA-------TLSLSISLAATTGLYEQPA---KSEEALSAWERVYIPV 111
S+ S N QF+ +A L ++ +L +G +Q A K+ + W ++Y
Sbjct: 147 STDSGNTWQFIDMSAYATALVEILFITENLGFVSGSDDQGAVILKTLNGGATWTKIYGSN 206
Query: 112 DPGVVLLDIAFVPDDLNHGFLLGTRQT------LLETKDGGKTWAPRSIPSAEEEDFNYR 165
P + + +P N LL+T DGG TW ++ P + + +
Sbjct: 207 IPNEYVWKMQILPGTDNMRMFCSIESVAPNSGKLLKTVDGGATWETKNFPDVDVQAVGF- 265
Query: 166 FNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQL 204
+GW+ G T+D GE+W + + L
Sbjct: 266 -----VSSTKGWMGGHHTGFHETNDGGETWTNLGIGGSL 299
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 105/248 (42%), Gaps = 46/248 (18%)
Query: 96 KSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA----- 150
K+ + W ++ +P +I F+ D N GFL + +T +GG TW
Sbjct: 57 KTTNGGANWTQLSLPNPNNEYYRNIEFL--DENIGFLGTLNNSFYKTTNGGATWQKVQNI 114
Query: 151 ---PRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
P +I + + + G W +PA ++ ++D+G +W+ I D
Sbjct: 115 SPYPEAICGLD------TIGTSTVYGCGAWF--QPAYIIKSTDSGNTWQFI--------D 158
Query: 208 MAFWQPHNRAVARRIQNMGWRA----DGGLWLLVRGGGLFLSK--GTGITEEF----EEV 257
M+ + + +N+G+ + G + L GG +K G+ I E+ + +
Sbjct: 159 MSAYATALVEILFITENLGFVSGSDDQGAVILKTLNGGATWTKIYGSNIPNEYVWKMQIL 218
Query: 258 PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE 317
P G ++ E+ A SG LLKT +GG TW + D ++ +V F++
Sbjct: 219 P------GTDNMRMFCSIES-VAPNSGKLLKTVDGGATWETKNFPD---VDVQAVGFVSS 268
Query: 318 KKGFVLGN 325
KG++ G+
Sbjct: 269 TKGWMGGH 276
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 268 DVGYRSQDEAWAA-GGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFV 322
DV + +++ WAA GGSG + KTTNGG W + + +++F++E GF+
Sbjct: 36 DVFFLNENLGWAARGGSGAVFKTTNGGANWTQLSLPNPNNEYYRNIEFLDENIGFL 91
>gi|302541378|ref|ZP_07293720.1| putative oxidoreductase (putative secreted protein) [Streptomyces
hygroscopicus ATCC 53653]
gi|302458996|gb|EFL22089.1| putative oxidoreductase (putative secreted protein) [Streptomyces
himastatinicus ATCC 53653]
Length = 351
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 27/212 (12%)
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV-----GKPAIL 185
++ GT+ T+L T+DGG++W S P AE F I G +V G+ + +
Sbjct: 53 WVAGTKGTVLRTRDGGRSWRNVSPPGAE----GLEFRDIEAFGVRRAVVLAIGEGEASRV 108
Query: 186 LHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG---- 241
T D G +W + + P AF+ AR + DG +L G G
Sbjct: 109 FVTDDGGTTWSE---AFRNPDPRAFYDCLTFFDARHGIALSDPVDGKYRILGTGDGGRTW 165
Query: 242 -LFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAW-AAGGSGV--LLKTTNGGKTWI 297
+ S+G + E S G ++ G R +AW A GG+ + T + G+TW
Sbjct: 166 RVLPSEGMPDAQPGEAAFAAS-GQCLVSAGRR---DAWFATGGAATARVFHTADRGRTWS 221
Query: 298 REKA---ADNIAANLYSVKFINEKKGFVLGND 326
A A + A ++++ F + + G +G D
Sbjct: 222 VADAPLPAGDPARGVFALAFRDTRHGLAVGGD 253
>gi|422301177|ref|ZP_16388546.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9806]
gi|389790583|emb|CCI13556.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9806]
Length = 775
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 35/240 (14%)
Query: 89 GLYEQPAKSEEALSAWERVYIPVDPGVV-LLDIAFVPDDLNHGFLLGTRQTLLETKDGGK 147
G+Y KSE+A +W++V ++ + L+IA P D N +G + + T+DGGK
Sbjct: 108 GIY----KSEDAGESWQKVNQGLETNFINFLEIA--PSDPNIAAAVGLEKGVYLTEDGGK 161
Query: 148 TWA---PRS--IPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSS 202
W+ P + I S N R I F ++G L +SD G++W+ +PL +
Sbjct: 162 NWSNIFPTTALITSLAITPNNPR--RIFFGDEQG-------KLYTSSDGGKTWQNLPLPA 212
Query: 203 QLPG-DMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQS 261
+ D + P+ + R + G++ V G F + GI ++ E V S
Sbjct: 213 NVGAVDAIAFSPN---LDRDKTFFVGTKEAGIFKTVDDGKTFQAVNEGIKDKIIEDIVIS 269
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR--EKAADNIAANLYSV-KFINEK 318
Y +A + + +GGK+W R E + A+ Y V F+N K
Sbjct: 270 P-------DYAQNSTLYAITWHDGMYVSQDGGKSWTRMSEGLTKDKQADDYKVPHFMNLK 322
>gi|372272547|ref|ZP_09508595.1| BNR repeat-containing glycosyl hydrolase [Marinobacterium stanieri
S30]
Length = 326
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 108/267 (40%), Gaps = 37/267 (13%)
Query: 59 SSSSSSSLNRRQFVSQTATLSLSISLAA---TTGLYEQPAKSEEALSAWERVYIPVDPGV 115
S + SL RQ L+ + A T G S + ++W++ +
Sbjct: 22 SHRDTPSLGPRQIPVDNMNLTSIVQTDAGLVTAGELGHILISSDQGNSWQQASLSQQRHA 81
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
++ + F D HG +G +L+T+DGG+ W + E SI+
Sbjct: 82 LITRLHFTDD--RHGLAIGHEGWILKTEDGGRHWKEVAFNPGSEP-----LLSINRLPSG 134
Query: 176 GWI-VGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
W+ +G L ++D G SW +P P + W +N ++ D W
Sbjct: 135 VWMAIGAFGQALVSNDNGNSWSSMP-----PPNGTDWHLNNLLPSK---------DHTTW 180
Query: 235 LLV-RGGGLFLSKGTGITEEFEEVPVQSRG--FGILDVGYRSQDEAWAA-GGSGVLLKTT 290
L+V G LF S G + +E +P G +G L++G + W G G + ++
Sbjct: 181 LIVGEAGTLFRSTDGG--QSWETIPEFYNGSFYGGLNLG----GDTWVVYGMRGNIFRSV 234
Query: 291 NGGKTWIREKAADNIAANLYSVKFINE 317
+ G++W E ++ A+L++ ++
Sbjct: 235 DNGQSW--ESVGGDLQASLFTHSVLDN 259
>gi|390455777|ref|ZP_10241305.1| VPS10 domain-containing receptor SorCS3 [Paenibacillus peoriae KCTC
3763]
Length = 416
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 22/100 (22%)
Query: 119 DIAFVPDDLNHGFLL-----GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
DI+F D HG+++ T +L T DGG++W ++P+ E +SI +
Sbjct: 122 DISFT--DSRHGWVVRQNLDKTATVILRTSDGGQSWDVSALPNGE------YVSSIQYVN 173
Query: 174 -KEGWIVG--------KPAILLHTSDAGESWERIPLSSQL 204
GWI+ + +L HT+D G +W+++ SS +
Sbjct: 174 PSTGWIMAYVNLDKHDQQKLLYHTTDGGATWKKVAQSSGM 213
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 126 DLNHGFLLGTRQT---LLETKDGGKTWAPRSIPSAEEEDFNYRF---NSISF-KGKEGWI 178
D N G + G + L T DGGKTW +I +E F + ISF + GW+
Sbjct: 76 DNNKGLVWGVTRNEFRLYYTHDGGKTW--NNISPSENVQFQDKLEYGKDISFTDSRHGWV 133
Query: 179 VGK-----PAILLHTSDAGESWE 196
V + ++L TSD G+SW+
Sbjct: 134 VRQNLDKTATVILRTSDGGQSWD 156
>gi|381167230|ref|ZP_09876438.1| conserved hypothetical protein [Phaeospirillum molischianum DSM
120]
gi|380683538|emb|CCG41250.1| conserved hypothetical protein [Phaeospirillum molischianum DSM
120]
Length = 405
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R ++ + D G TW +P + +++F +GW VG ++LH++D
Sbjct: 87 VGERGIVVYSDDNGATWTQAEVP------VSVTLTAVTFPTATDGWAVGHDGVILHSADR 140
Query: 192 GESW 195
G++W
Sbjct: 141 GQTW 144
>gi|405371594|ref|ZP_11027117.1| hypothetical protein A176_3563 [Chondromyces apiculatus DSM 436]
gi|397088783|gb|EJJ19744.1| hypothetical protein A176_3563 [Myxococcus sp. (contaminant ex DSM
436)]
Length = 624
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 25/167 (14%)
Query: 137 QTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWE 196
Q +L T DGG+TW S+ A+ ++R + G WI G + + D G +W
Sbjct: 129 QDMLRTADGGRTWD--SVSPAD----SFRVYDLEQSGGRTWICGSSGNIYRSDDFGVTWT 182
Query: 197 RI---PLSS-QLPGDMAFWQP-HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT-GI 250
+ P ++ DM+F P H AV + G LW GG + T G
Sbjct: 183 DLRGTPFNADDRCMDMSFLDPEHGWAVGMK---------GSLWATQDGGATWRRLETPGQ 233
Query: 251 TEEFEEVPVQSRGFGILD-VGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ + E S F L V + + AW G +G +T++GGKTW
Sbjct: 234 SPQGAEASCGS--FTSLSAVTLLTPEVAWVLGSAG-RCQTSDGGKTW 277
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW----APRSIPSAEEEDFNYRFNSIS-- 170
+D++F+ D HG+ +G + +L T+DGG TW P P E F S+S
Sbjct: 195 CMDMSFL--DPEHGWAVGMKGSLWATQDGGATWRRLETPGQSPQGAEASCG-SFTSLSAV 251
Query: 171 --FKGKEGWIVGKPAILLHTSDAGESWERIPLSS 202
+ W++G A TSD G++W P S
Sbjct: 252 TLLTPEVAWVLGS-AGRCQTSDGGKTWRLRPFIS 284
>gi|188591210|ref|YP_001795810.1| glycosyl hydrolase, bnr repeat [Cupriavidus taiwanensis LMG 19424]
gi|170938104|emb|CAP63088.1| putative Glycosyl hydrolase, BNR repeat [Cupriavidus taiwanensis
LMG 19424]
Length = 321
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 23/153 (15%)
Query: 177 WIVGKPAILLHTSDAGESW--ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
W VG +LH+ DAG++W +R + L D+A W ARR +G
Sbjct: 59 WAVGTNGKILHSDDAGQAWRLQRAAQRATLQ-DIAAWD------ARRAVAVG-------- 103
Query: 235 LLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGK 294
G + + G+ + P S ++ V AWA G GVLL++ + G
Sbjct: 104 ---NDGVILATADGGVNWQAARAPRSSISNKLMRVQAGQDGRAWAVGSGGVLLRSLDYGN 160
Query: 295 TWIREKAADNIAANLYSVKFINEKKGFVLGNDG 327
+W ++ A N V F + +G V+G G
Sbjct: 161 SWESAAPVEDTAWN--GVAF-DGARGCVVGEFG 190
>gi|149927307|ref|ZP_01915563.1| Glycosyl hydrolase, BNR repeat [Limnobacter sp. MED105]
gi|149824021|gb|EDM83244.1| Glycosyl hydrolase, BNR repeat [Limnobacter sp. MED105]
Length = 334
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 120 IAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV 179
+AF D HG G L T DGG+TW R P A DF Y ++++ G+
Sbjct: 181 LAFTSD--THGIAFGEFGMLAFTDDGGQTWQ-RGEPIAG--DF-YTYDALFTDPSTGYAS 234
Query: 180 GKPAILLHTSDAGESWERIPLSSQLP 205
G +L T+D G +W R+ +++ P
Sbjct: 235 GLAGQVLKTTDGGVTWARLVNTTEAP 260
>gi|358637325|dbj|BAL24622.1| hypothetical protein AZKH_2316 [Azoarcus sp. KH32C]
Length = 356
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G R +L + D G TW +P + + +++F K GW VG ++LH+SDA
Sbjct: 59 VGQRGHILFSDDRGSTWTQAQVPVSTD------LVAVTFPTEKLGWAVGHGGVVLHSSDA 112
Query: 192 GESWER 197
G +W +
Sbjct: 113 GATWVK 118
>gi|149278445|ref|ZP_01884582.1| putative oxidoreductase [Pedobacter sp. BAL39]
gi|149230815|gb|EDM36197.1| putative oxidoreductase [Pedobacter sp. BAL39]
Length = 340
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 38/188 (20%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW------IVGKPAI--- 184
G +L T DGGKTW +E + +I G + W + G P
Sbjct: 94 GAPAYILLTVDGGKTW---------KETYKNTDTAIFLDGMDFWDDNRGIMFGDPIKDKM 144
Query: 185 -LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG--GG 241
LL + D G +W I S LP M + A I+ MG +G +W+ G
Sbjct: 145 QLLRSIDGGNNWSDI--SGNLPAKMGVGEAGFAASGSTIETMG---EGRVWIATGGTVSN 199
Query: 242 LFLSKGTGITEEFEEVPV--QSRGFGILDVGYRSQDEAWAAGG---------SGVLLKTT 290
++ S G T + E P+ G + + ++ GG + VLL T+
Sbjct: 200 IYYSSNFGATWQVFECPILQGKSSTGPFSMAFLNETTGVVVGGDYQKDKENENNVLL-TS 258
Query: 291 NGGKTWIR 298
GGKTW++
Sbjct: 259 TGGKTWVK 266
>gi|448351636|ref|ZP_21540433.1| BNR repeat-containing glycosyl hydrolase [Natrialba taiwanensis DSM
12281]
gi|445632960|gb|ELY86165.1| BNR repeat-containing glycosyl hydrolase [Natrialba taiwanensis DSM
12281]
Length = 312
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVG-KPAILLHT 188
G T+ L + D GKTW +P E ++ ++ E G PA L +
Sbjct: 42 GVFAATKSGLYRSVDEGKTWENLDVPREEV------YSVVASPDGERLYAGTHPAHLYVS 95
Query: 189 SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL--VRGGGLFLSK 246
+D G++W+ + LP + P +R A ++++G + ++ V GG+ +S
Sbjct: 96 TDGGDTWDELEGFQDLPSRDQWHTPRHRNEA-HVRSLGVHPETPDRIIVGVEVGGVHISD 154
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G T V +L G DE A+ G G L +T + G++W R
Sbjct: 155 DQGETWTERRDGVHDDVHHVLIFG---PDEYVASTGDG-LYRTQDAGQSWTR 202
>gi|375310680|ref|ZP_09775950.1| hypothetical protein WG8_4480 [Paenibacillus sp. Aloe-11]
gi|375077382|gb|EHS55620.1| hypothetical protein WG8_4480 [Paenibacillus sp. Aloe-11]
Length = 416
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 22/100 (22%)
Query: 119 DIAFVPDDLNHGFLL-----GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173
DI+F D HG+++ T +L T DGG++W ++P+ E +SI +
Sbjct: 122 DISFT--DSRHGWVVRQNLDKTATVILRTADGGQSWDVSALPNGE------YVSSIQYVN 173
Query: 174 -KEGWIVG--------KPAILLHTSDAGESWERIPLSSQL 204
GWI+ + +L HT+D G +W+++ SS +
Sbjct: 174 PSTGWIMAYVNLNERDQQKLLYHTTDGGATWKKVAQSSGM 213
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 126 DLNHGFLLGTRQT---LLETKDGGKTWAPRSIPSAEEEDFNYRF---NSISF-KGKEGWI 178
D N G + G + L T DGGKTW +I +E F + ISF + GW+
Sbjct: 76 DNNKGLVWGVTRNELRLYYTHDGGKTW--NNISPSENVQFQDKLEYGKDISFTDSRHGWV 133
Query: 179 VGK-----PAILLHTSDAGESWE 196
V + ++L T+D G+SW+
Sbjct: 134 VRQNLDKTATVILRTADGGQSWD 156
>gi|160875667|ref|YP_001554983.1| BNR repeat-containing protein [Shewanella baltica OS195]
gi|378708867|ref|YP_005273761.1| BNR repeat-containing protein [Shewanella baltica OS678]
gi|418024763|ref|ZP_12663745.1| BNR repeat-containing protein [Shewanella baltica OS625]
gi|160861189|gb|ABX49723.1| BNR repeat protein [Shewanella baltica OS195]
gi|315267856|gb|ADT94709.1| BNR repeat-containing protein [Shewanella baltica OS678]
gi|353536049|gb|EHC05609.1| BNR repeat-containing protein [Shewanella baltica OS625]
Length = 338
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
+W +V PV L + F+ D L G+ +G T+L T+DGG+TW + E+ F
Sbjct: 69 SWHQVATPVSSQ--LTKVFFLNDKL--GWAVGHDATILHTQDGGQTWQQQMHSPEIEKPF 124
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
+ + G+ +G + T+D G W
Sbjct: 125 ---LDVVFLDENIGFAIGAYGLFYRTNDGGAHW 154
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 258 PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE 317
PV S+ + V + + WA G +L T +GG+TW ++ + I V F++E
Sbjct: 76 PVSSQ---LTKVFFLNDKLGWAVGHDATILHTQDGGQTWQQQMHSPEIEKPFLDVVFLDE 132
Query: 318 KKGFVLGNDGVL 329
GF +G G+
Sbjct: 133 NIGFAIGAYGLF 144
>gi|443471542|ref|ZP_21061604.1| BNR repeat protein [Pseudomonas pseudoalcaligenes KF707]
gi|442901613|gb|ELS27433.1| BNR repeat protein [Pseudomonas pseudoalcaligenes KF707]
Length = 362
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAG 192
G R +L + D G+ W S+P + ++ F + GW VG ++L T+DAG
Sbjct: 62 GERGLVLLSDDNGQHWRQASVP------VSVGLTAVQFVDARTGWAVGHAGVVLATTDAG 115
Query: 193 ESW 195
E+W
Sbjct: 116 ETW 118
>gi|406885684|gb|EKD32830.1| hypothetical protein ACD_76C00139G0004 [uncultured bacterium]
Length = 2773
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 13/74 (17%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIV-----GKP- 182
G ++G+ T+L T+D G TWAP + PS E F +SF +G+IV G P
Sbjct: 588 GIVVGSSGTILRTEDAGATWAPVANPSGGE-----TFEEVSFYNASDGFIVSSTTGGAPI 642
Query: 183 -AILLHTSDAGESW 195
+L TS+ G +W
Sbjct: 643 GGEVLITSNGGATW 656
>gi|26989920|ref|NP_745345.1| BNR repeat-containing protein [Pseudomonas putida KT2440]
gi|24984833|gb|AAN68809.1|AE016513_6 BNR domain protein [Pseudomonas putida KT2440]
Length = 353
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 84 LAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETK 143
LAA GL A + A ++ P VL D+A L +G R +L +
Sbjct: 10 LAACCGLPPAFAGDSVDVLAQPALHGPQALRAVLQDVARADARL---VAVGERGVVLLSD 66
Query: 144 DGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESW 195
D G TW A ++ F + GW VG ++LH+ D GE W
Sbjct: 67 DNGATWR-----QATAVPVGVSLTAVQFIDARNGWAVGHAGVVLHSQDGGEHW 114
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
R+ A G GV+L + + G TW R+ A + +L +V+FI+ + G+ +G+ GV+L
Sbjct: 48 RADARLVAVGERGVVLLSDDNGATW-RQATAVPVGVSLTAVQFIDARNGWAVGHAGVVLH 106
>gi|332707185|ref|ZP_08427239.1| hypothetical protein LYNGBM3L_33760 [Moorea producens 3L]
gi|332354046|gb|EGJ33532.1| hypothetical protein LYNGBM3L_33760 [Moorea producens 3L]
Length = 325
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 114 GVVLLDIAFVPDD--LNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF 171
GV L +A P + + +G+ + +Q LL +KDGGKTW +P+ ED + +
Sbjct: 150 GVDFLTLAIAPANPKVIYGWAVSGKQGLLVSKDGGKTW--NQLPAQGLEDNPHNL-VVDP 206
Query: 172 KGKEGWIVGKPAILLHTSDAGESWERIPLSSQ-LPGDMAFWQPHNRAVARRIQNMGWRAD 230
+ E L T D G+SW +P S + L +A ++ A + G+
Sbjct: 207 RNPEHLFAATTLGLFETRDGGKSWILVPNSQESLVASLAL-----KSEAEKTVIYGFHI- 260
Query: 231 GGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG-FGILDVGYRSQDEAWAAGGSGVLLKT 289
L GG F S G + +E + ++ F + + + + +AA +L++
Sbjct: 261 ----LSEDSGGFFKSTDGG--KNWEAISSETGDLFLYMAIAPSNPEFLYAANDQNGILQS 314
Query: 290 TNGGKTW 296
+ GKTW
Sbjct: 315 KDSGKTW 321
>gi|423696628|ref|ZP_17671118.1| BNR domain protein [Pseudomonas fluorescens Q8r1-96]
gi|388003465|gb|EIK64792.1| BNR domain protein [Pseudomonas fluorescens Q8r1-96]
Length = 358
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G++W S+P + ++ F ++GW VG ++L T D
Sbjct: 53 VGERGLVLLSDDNGQSWRQASVP------VSVSLTAVQFVDAQQGWAVGHAGVVLTTHDG 106
Query: 192 GESW 195
GE W
Sbjct: 107 GEHW 110
>gi|217973086|ref|YP_002357837.1| BNR repeat-containing protein [Shewanella baltica OS223]
gi|217498221|gb|ACK46414.1| BNR repeat protein [Shewanella baltica OS223]
Length = 338
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
+W +V PV L + F+ D L G+ +G T+L T+DGG+TW + E+ F
Sbjct: 69 SWHQVATPVSSQ--LTKVFFLNDKL--GWAVGHDATILHTQDGGQTWQQQMHSPEIEKPF 124
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
+ + +G +G + T+D G W
Sbjct: 125 ---LDVVFLDENKGVAIGAYGLFYRTNDGGAHW 154
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 258 PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE 317
PV S+ + V + + WA G +L T +GG+TW ++ + I V F++E
Sbjct: 76 PVSSQ---LTKVFFLNDKLGWAVGHDATILHTQDGGQTWQQQMHSPEIEKPFLDVVFLDE 132
Query: 318 KKGFVLGNDGVL 329
KG +G G+
Sbjct: 133 NKGVAIGAYGLF 144
>gi|359452172|ref|ZP_09241527.1| BNR/Asp-box repeat protein [Pseudoalteromonas sp. BSi20495]
gi|358050766|dbj|GAA77776.1| BNR/Asp-box repeat protein [Pseudoalteromonas sp. BSi20495]
Length = 331
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSI-PSAEEEDFNYRFNSISFKGKEGWIVGKPAILL 186
N+G+ G T++ T DGG W + + P ++ + F + +G+ VG +
Sbjct: 84 NNGWACGHDATIINTTDGGLNWQLQQVKPELDKPCLDILFEN----DLQGFAVGAYGMFY 139
Query: 187 HTSDAGESWERIPLSSQLPGD 207
HT+D G+ W++ L S L D
Sbjct: 140 HTTDGGKHWQKRFLDSLLFSD 160
Score = 37.7 bits (86), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 24/103 (23%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LDI F +DL GF +G T DGGK W R + S D N + EG+
Sbjct: 119 LDILF-ENDL-QGFAVGAYGMFYHTTDGGKHWQKRFLDSLLFSDDRDYLNDLKENDPEGY 176
Query: 178 ----------------------IVGKPAILLHTSDAGESWERI 198
IVG+ ++ +SD G +WER+
Sbjct: 177 EAETASILPHFNRIEKTTNGLIIVGEMGLMARSSDNGVTWERL 219
>gi|442319063|ref|YP_007359084.1| hypothetical protein MYSTI_02071 [Myxococcus stipitatus DSM 14675]
gi|441486705|gb|AGC43400.1| hypothetical protein MYSTI_02071 [Myxococcus stipitatus DSM 14675]
Length = 611
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
+L T DGG++W + P +D + ++ + G WI G + + D+G SW +
Sbjct: 130 VLRTSDGGRSWHSVAFP---RQDPTWIYD-LERAGPRTWICGSSGTIYRSDDSGASWLEL 185
Query: 199 ---PLSSQLPGDMAFWQPHNRAVARRIQNM--GWRA--DGGLWLLVRGGGLFLSKGTGIT 251
P +S+ +R ++ + GW A G LW GG + I
Sbjct: 186 KGTPFTSE-----------DRCMSLSFLDAERGWAAGMRGSLWATKDGGTTWRR----IE 230
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ P + + +V + AW G +G +TT+GG TW
Sbjct: 231 TPWPPAPARGPATMLREVTLLTPQVAWLQGSAG-RFQTTDGGTTW 274
>gi|414069391|ref|ZP_11405385.1| BNR/Asp-box repeat protein [Pseudoalteromonas sp. Bsw20308]
gi|410808194|gb|EKS14166.1| BNR/Asp-box repeat protein [Pseudoalteromonas sp. Bsw20308]
Length = 331
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSI-PSAEEEDFNYRFNSISFKGKEGWIVGKPAILL 186
N+G+ G T++ T DGG W + + P ++ + F + +G+ VG +
Sbjct: 84 NNGWACGHDATIINTTDGGLNWQLQQVKPELDKPCLDILFEN----DLQGFAVGAYGMFY 139
Query: 187 HTSDAGESWERIPLSSQLPGD 207
HT+D G+ W++ L S L D
Sbjct: 140 HTTDGGKHWQKRFLDSLLFSD 160
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 24/103 (23%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LDI F +DL GF +G T DGGK W R + S D N + EG+
Sbjct: 119 LDILF-ENDL-QGFAVGAYGMFYHTTDGGKHWQKRFLDSLLFSDDRDYLNDLKENDPEGY 176
Query: 178 ----------------------IVGKPAILLHTSDAGESWERI 198
IVG+ ++ +SD G +WER+
Sbjct: 177 EAETASILPHFNRIEKTTNGLIIVGEMGLMARSSDNGVTWERL 219
>gi|409721509|ref|ZP_11269684.1| BNR repeat-containing glycosyl hydrolase [Halococcus hamelinensis
100A6]
gi|448723834|ref|ZP_21706349.1| BNR repeat-containing glycosyl hydrolase [Halococcus hamelinensis
100A6]
gi|445786901|gb|EMA37655.1| BNR repeat-containing glycosyl hydrolase [Halococcus hamelinensis
100A6]
Length = 307
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 27/229 (11%)
Query: 80 LSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTL 139
+S+ + G++ +S E+L ERV VD G L L+ T L
Sbjct: 1 MSLLIGTQDGVF----RSGESLDDAERV---VDAGNTLRVRT-----LDEDAYAATTSGL 48
Query: 140 LETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP 199
+ DGG+TW +P EE ++ S G+ + PA L ++D G +WE
Sbjct: 49 YRSTDGGRTWENLDVP--REEVYSV---VTSPDGERLYAGTHPAHLYVSTDNGATWEECE 103
Query: 200 LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL--VRGGGLFLSKGTGIT-EEFEE 256
+LP + P +R A ++++G AD L+ V GG+ +S G T E E
Sbjct: 104 GFQELPSREEWHTPRHRNEA-HVRSLGTHADAPDRLVAGVEVGGVHVSDDRGETWTERRE 162
Query: 257 VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR-EKAADN 304
++ G E + A G L +T + G +WIR ++A D+
Sbjct: 163 GVHHDVHHVLVLGG-----EEYVASTGGGLYRTRDAGTSWIRLDEAVDH 206
>gi|86160337|ref|YP_467122.1| BNR repeat-containing glycosyl hydrolase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85776848|gb|ABC83685.1| glycosyl hydrolase, BNR repeat protein [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 356
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 40/205 (19%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R + + DGG W ++P +E+ RF S GW VG ++L T D G
Sbjct: 56 VGERGLAVFSDDGGARWTQAAVPVSEDLT-AVRFASPRL----GWAVGHGGVVLATEDGG 110
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
WER + R +AR + W DG R L++ +
Sbjct: 111 ARWER--------------RLDGRGLARLLDA--WARDGA----GRIAPAALAQARDLAA 150
Query: 253 EFEEVPVQSRGFGILDVGY-RSQDEAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANL 309
+ P +LDV ++ E +A G G+ L T +GG++W ++ + A +L
Sbjct: 151 RGPDQP-------LLDVWMDQAGREGFAVGAFGLALATGDGGRSWTPCLDRIENPRALHL 203
Query: 310 YSVKFINEKKG--FVLGNDGVLLQY 332
++ + E +G ++ G G+LL+
Sbjct: 204 HA---LLEARGTLYLAGEQGLLLRL 225
>gi|222055556|ref|YP_002537918.1| hypothetical protein Geob_2464 [Geobacter daltonii FRC-32]
gi|221564845|gb|ACM20817.1| Beta-propeller repeat TECPR [Geobacter daltonii FRC-32]
Length = 323
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 36/189 (19%)
Query: 148 TWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLP- 205
TW +P FN+ + G K+GW VG+ ++L G WE++ +P
Sbjct: 51 TWKTYQLP------FNHVVFDLKQTGEKDGWAVGERGLILRFD--GTKWEQVESPVAVPL 102
Query: 206 GDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFG 265
+AF + R W + G + G ++ ++EV + +
Sbjct: 103 FAIAFPESDRR-----------------WAVGADGTIL----EGNSDGWKEVQKPDK-WH 140
Query: 266 ILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
++ V + S + WA G G ++ GK W + ++ +A N V F N G+ +GN
Sbjct: 141 LMSVAFPSPADGWAVGERGSIVHYD--GKEWKKVESPKKVALN--RVVFNNPNDGWAVGN 196
Query: 326 DGVLLQYLG 334
GV+L Y G
Sbjct: 197 QGVILHYDG 205
>gi|311745357|ref|ZP_07719142.1| putative oxidoreductase (putative secreted protein) [Algoriphagus
sp. PR1]
gi|311302371|gb|EAZ82119.2| putative oxidoreductase (putative secreted protein) [Algoriphagus
sp. PR1]
Length = 319
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 216 RAVARRIQNMGWRA-DGGLWLLVRGGGLFLSKGTGITEEFEEVPVQS-RGFGILDVGYRS 273
R ++ + W A GG WL GG + G+ E + V +S F + S
Sbjct: 42 RGLSPVTAEIAWAAGSGGTWLRTIDGGQ--NWDYGVVAELDTVDFRSIHAFDAMKAVVVS 99
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325
AG V+ KT +GGKTW + + AA L + F +E+ GFV+G+
Sbjct: 100 ------AGQPSVIYKTEDGGKTWKLKHQELDEAAFLDGITFTDEENGFVIGD 145
>gi|188592344|ref|YP_001796942.1| glycosyl hydrolase [Cupriavidus taiwanensis LMG 19424]
gi|170938718|emb|CAP63705.1| putative Glycosyl hydrolase, BNR repeat (Asp-box) [Cupriavidus
taiwanensis LMG 19424]
Length = 320
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 30/237 (12%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ +W + G L +AF D G +G +L T+DGG W +
Sbjct: 63 SDDLGRSWRPAAVDKPQGATLTQVAFA--DSRRGIAVGHSGQILRTEDGGAHWQQVAF-- 118
Query: 157 AEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNR 216
+ E + +++ + VG L + D G WE G A H
Sbjct: 119 -DPESSDPLLGALAQASGPWFAVGSFGRFLVSRDQGRHWEEA-------GGKAMQDRHLN 170
Query: 217 AVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE-EFEEVPVQSRGFGILDVGYRSQD 275
A+A Q G +LV GL L G ++ E + P + +G+L + +D
Sbjct: 171 AIASDGQ--------GRLMLVGEAGLVLRSSDGGSQWEPVKTPYEGSLYGVLPL----RD 218
Query: 276 EAWAA-GGSGVLLKTTNGGKTWIREKAADN-IAANLYSVKFINEKKGFVLGNDGVLL 330
AW A G G L++ + G TW +AAD + + + + + + + G GVL+
Sbjct: 219 GAWLAYGMRGNALRSEDFGTTW---RAADTGLRTSFFGGAELPDGRIVLAGQGGVLV 272
>gi|330809167|ref|YP_004353629.1| hypothetical protein PSEBR_a2346 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423696837|ref|ZP_17671327.1| glycosyl hydrolase, BNR repeat protein [Pseudomonas fluorescens
Q8r1-96]
gi|327377275|gb|AEA68625.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|388004272|gb|EIK65599.1| glycosyl hydrolase, BNR repeat protein [Pseudomonas fluorescens
Q8r1-96]
Length = 346
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGT----RQTLLETKDGGKTW--APRSIPSA 157
W+RV P + G + +A P D F+ GT R L T DGG+TW AP IP
Sbjct: 71 WQRVDSPFN-GQTVWKVAVDPQDAQRIFV-GTGAPSRAVLWRTLDGGQTWERAPVEIPEF 128
Query: 158 EEEDFNYRFNSISFKGKEG---WIVGKPAILLHTSDAGESWERI 198
E R + ++ + W + L H+ D G+SW R+
Sbjct: 129 CEGVSRPRLLAFAYDPTDRNQLWFGLEEGGLFHSRDGGDSWTRV 172
>gi|440748166|ref|ZP_20927420.1| Putative oxidoreductase [Mariniradius saccharolyticus AK6]
gi|436483370|gb|ELP39424.1| Putative oxidoreductase [Mariniradius saccharolyticus AK6]
Length = 344
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV--GKPAILLHTSDA 191
G++ T L T DGG TW I + DF + K +V G+PA++ T+D
Sbjct: 59 GSKGTWLRTLDGGNTWESGIIDGLDSVDFR---DIEGLDAKTAIVVAAGQPAVIYKTNDG 115
Query: 192 GESWERI---PLSSQLPGDMAFWQPHNRAVARRIQNMGW-----RADGGLWLLVR----- 238
G++WER P ++ L G ++ Q H A+ + W R G W +
Sbjct: 116 GQTWERKYEGPANAFLDG-LSVNQSHIYAIGDVVDGR-WMVLESRDQGETWTWLELSPDG 173
Query: 239 --GGGLFLSKGTGITEEFEEVPVQSRG 263
GGG F + G+ I + + + + G
Sbjct: 174 PDGGGSFAASGSTILADGDYIWFAAAG 200
>gi|429334179|ref|ZP_19214855.1| BNR domain-containing protein [Pseudomonas putida CSV86]
gi|428761189|gb|EKX83427.1| BNR domain-containing protein [Pseudomonas putida CSV86]
Length = 366
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R +L + D G+ W ++P + +++F + GW+ G ++L T D
Sbjct: 65 VGERGLILLSDDNGQHWRQVAVP------VSVGLTAVAFADARNGWVTGHSGVVLATRDG 118
Query: 192 GESWERIPLSSQLPGDMA 209
GESW S QL G+ A
Sbjct: 119 GESW-----SLQLDGERA 131
>gi|295699788|ref|YP_003607681.1| BNR repeat-containing protein [Burkholderia sp. CCGE1002]
gi|295439001|gb|ADG18170.1| BNR domain-containing protein [Burkholderia sp. CCGE1002]
Length = 355
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 54 SSSSSSSSSSSSLNRRQFVSQTATLSLSISLA------ATTGLYEQPAKSEEALSAWERV 107
S++ S++ +L+R SQ A S+ + +A G S++ + W +V
Sbjct: 24 SAAWSAAPVGHALDRPAVSSQRAAQSVLLGIAQAGKRLIAVGERGIVVISDDNAATWRQV 83
Query: 108 YIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTW 149
+PV V L + F D HG+ +G T+L T DGG+TW
Sbjct: 84 PVPVS--VTLTAVHFADD--KHGYAVGHSGTVLATADGGETW 121
>gi|358640178|dbj|BAL27474.1| glycosyl hydrolase [Azoarcus sp. KH32C]
Length = 350
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 42/200 (21%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDA 191
+G R + + D GK+W R A D ++SF + GW VG ++L +SDA
Sbjct: 58 VGQRGHIAYSDDQGKSW--RQARVAVSSDLV----AVSFPTPQRGWAVGHDGVVLASSDA 111
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
G +W S QL G R V + ++A G ++
Sbjct: 112 GATW-----SKQLDG---------RNVGAMMVEY-YKAQSG------------AESAKWV 144
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANL 309
E E Q LDV + + G ++L+TT+GGK W ++ + A +L
Sbjct: 145 TEAERFAAQGAENPFLDVWFADDKTGFVVGAFNLILRTTDGGKRWEPWLDRTDNPQALHL 204
Query: 310 YSVK------FINEKKGFVL 323
Y ++ F+ ++G V+
Sbjct: 205 YGIRAAGGDVFVTGEQGLVM 224
>gi|359443610|ref|ZP_09233446.1| BNR/Asp-box repeat protein [Pseudoalteromonas sp. BSi20429]
gi|392532559|ref|ZP_10279696.1| hypothetical protein ParcA3_00900 [Pseudoalteromonas arctica A
37-1-2]
gi|358034656|dbj|GAA69695.1| BNR/Asp-box repeat protein [Pseudoalteromonas sp. BSi20429]
Length = 331
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYS 311
++ E VP Q + V + +++ WA G ++ TT+GG W ++A +
Sbjct: 64 QQAELVPTQVL---LTAVDFSNENNGWACGHDATIINTTDGGVNWQLQQAQPKLDKPCLD 120
Query: 312 VKFINEKKGFVLGNDGVLLQ 331
+ F ++ KGF +G G+ Q
Sbjct: 121 ILFEDDLKGFAVGAYGMFYQ 140
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 24/103 (23%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LDI F DDL GF +G +T DGGK W R + S D N + EG+
Sbjct: 119 LDILF-EDDLK-GFAVGAYGMFYQTTDGGKHWQKRFLDSLLFSDDRDYLNDLKENDPEGY 176
Query: 178 ----------------------IVGKPAILLHTSDAGESWERI 198
+VG+ ++ + D G++W+RI
Sbjct: 177 EAETASILPHFNRIEKTDNGLMLVGEMGLMARSIDDGQTWQRI 219
>gi|406986306|gb|EKE06925.1| hypothetical protein ACD_18C00235G0004 [uncultured bacterium]
Length = 363
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 105/261 (40%), Gaps = 33/261 (12%)
Query: 52 SSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPV 111
S S S S S LN S T + + AT G Q K+ + + +WE V+ +
Sbjct: 94 SFDSGRSWKQSVSPLNVSLIRSLTINPKDNCDIYATNG--RQVFKTLDCVRSWEEVFNEI 151
Query: 112 DPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF 171
P + +AF P + ++ + LL++ D GKTW+ + + F++
Sbjct: 152 RPSDSITAVAFDPFHTENIYIGESNGDLLKSTDSGKTWSVINNFGRGTYIRDLSFDT--- 208
Query: 172 KGKEG--WIVGKPAILLHTSDAGESWERIPLSSQL---PGDMAFWQPHNRAVARRIQNMG 226
+EG ++ L + D+GE+W + LSS+L PG + F RR
Sbjct: 209 -NREGIFFVATLKNGLFRSKDSGETW--VNLSSKLAEYPGSLDF---------RRFLIYP 256
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEEV----PVQSRGFGILDVGYRSQDEAWAAGG 282
A+ W + G+ S+ +G E++E V P S V + E +
Sbjct: 257 SNAEEIYW--ISKYGILTSRNSG--EDWEPVKLVTPPGSVDIYAFTVSRFNNKEMYYTAT 312
Query: 283 ---SGVLLKTTNGGKTWIREK 300
++ +GGKTW K
Sbjct: 313 IDYKSSFYRSVDGGKTWETRK 333
>gi|220919141|ref|YP_002494445.1| glycosyl hydrolase family protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219956995|gb|ACL67379.1| glycosyl hydrolase, BNR repeat protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 356
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 40/205 (19%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAG 192
+G R + + DGG W ++P +E+ RF S GW VG ++L + D G
Sbjct: 56 VGERGLAVLSDDGGARWTQAAVPVSEDLT-AVRFASPRL----GWAVGHGGVVLASEDGG 110
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
WER + R +AR + W DG R L++ +
Sbjct: 111 ARWER--------------RLDGRGLARLLDA--WARDGA----GRIAPAALAQARDLAA 150
Query: 253 EFEEVPVQSRGFGILDVGYRSQD-EAWAAGGSGVLLKTTNGGKTWI--REKAADNIAANL 309
+ P +LDV + E +A G G+ L T +GG+TW ++ + A +L
Sbjct: 151 RGPDQP-------LLDVWLDAAGREGFAVGAFGLALATRDGGRTWTPWLDRLENPRALHL 203
Query: 310 YSVKFINEKKG--FVLGNDGVLLQY 332
++ + E +G ++ G G+LL+
Sbjct: 204 HA---LLEARGALYLAGEQGLLLRL 225
>gi|384916200|ref|ZP_10016375.1| VPS10 repeats containing protein [Methylacidiphilum fumariolicum
SolV]
gi|384526395|emb|CCG92246.1| VPS10 repeats containing protein [Methylacidiphilum fumariolicum
SolV]
Length = 332
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 131 FLLGTRQ---TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
+LLGT++ LL++ D G+TW +P ++ F + S+KG WI +L+
Sbjct: 179 YLLGTKRPTPYLLKSLDSGETWNEVLLPLINSYPYSLFF-ATSWKG---WIGLDGGKILY 234
Query: 188 TSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQN 224
T D GE+W+ L + P ++ P R A +QN
Sbjct: 235 TEDGGENWQVYQLPTNRPVTALWFDPLGRGYA-AVQN 270
>gi|146302505|ref|YP_001197096.1| BNR repeat-containing glycosyl hydrolase [Flavobacterium johnsoniae
UW101]
gi|146156923|gb|ABQ07777.1| glycosyl hydrolase, BNR repeat-containing protein [Flavobacterium
johnsoniae UW101]
Length = 360
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 113/284 (39%), Gaps = 54/284 (19%)
Query: 72 VSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGF 131
++QT+ +S+A LY K + + VY V+P V + F D G
Sbjct: 100 IAQTSKDIFLLSVANPALLYSVSKKDHKV----KLVYKEVNPKVFYDSMQFWND--KEGI 153
Query: 132 LLG--TRQT--LLETKDGGKTWAP---RSIPS--AEEEDFNYRFNSISFKGKEGWIV--G 180
+G T T ++ T+DGG+TW +P+ E F +I KG + W+V G
Sbjct: 154 AIGDPTEDTFSVIVTRDGGETWTKLLSDKLPTNAVGEAAFAASNTNIVIKGNDTWLVSGG 213
Query: 181 KPAILLHTSDAGESWERI--PL--SSQLPGDMA--FWQPHNRAVA--------RRIQNMG 226
K A + ++ D ++W+ + P+ Q+ G F+ +A +I N
Sbjct: 214 KKARVFYSPDKAKTWKVVETPIVQGKQMTGIFTADFYDSKQGFIAGGDYDKPNSKINNKA 273
Query: 227 WRADGG-LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
+ DGG W L+ G G + VP G I+ V GS
Sbjct: 274 FTKDGGKTWELIGQ-----EMGFGYASCVQYVP-GGNGREIICV------------GSEG 315
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
+ + NGG+ W + + ++++F+N G + V+
Sbjct: 316 IQYSQNGGENWTQLST----DSKFFTIRFVNRNTAIAAGYNKVV 355
>gi|239992068|ref|ZP_04712732.1| oxidoreductase [Streptomyces roseosporus NRRL 11379]
Length = 362
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 27/176 (15%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAI----LLHTSDAGE 193
+L T+DGG TW S D FN ++ F + G G P +L T+D G
Sbjct: 121 VLRTEDGGATW----TESFRNTDPRAFFNCLTFFDSRHGLAAGDPVDGKFRVLSTADGGR 176
Query: 194 SWERIP---LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
SW +P + + LPG+ F V+ +++ W GG + S+ G+
Sbjct: 177 SWRVLPDAGMPAALPGEAGFAASGQCLVSSGAKDV-WLTTGG----AETARVLHSRDRGL 231
Query: 251 --TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS--------GVLLKTTNGGKTW 296
T +P G+ V +R + A GG T +GG++W
Sbjct: 232 TWTASASALPAGDPARGVFAVAFRDRTHGIAVGGDYRPDQASPQAAAVTGDGGRSW 287
>gi|163751616|ref|ZP_02158837.1| BNR repeat protein [Shewanella benthica KT99]
gi|161328528|gb|EDP99682.1| BNR repeat protein [Shewanella benthica KT99]
Length = 341
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 278 WAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
WA G +++T +GGKTW + + I L + F +E+ G +G G+
Sbjct: 97 WAVGHDATIIRTQDGGKTWQLQMESREIEKPLLDIHFFDEENGIAVGAYGLF 148
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 130 GFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE-GWIVGKPAILLHT 188
G+ +G T++ T+DGGKTW + E + I F +E G VG + T
Sbjct: 96 GWAVGHDATIIRTQDGGKTWQLQ----MESREIEKPLLDIHFFDEENGIAVGAYGLFYRT 151
Query: 189 SDAGESWE 196
+DAGE W+
Sbjct: 152 NDAGEHWQ 159
>gi|421615059|ref|ZP_16056097.1| oxidoreductase (secreted protein) [Rhodopirellula baltica SH28]
gi|408494232|gb|EKJ98852.1| oxidoreductase (secreted protein) [Rhodopirellula baltica SH28]
Length = 359
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 26/138 (18%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPA----ILLHT 188
GT LL T+DGG TW + AE E F+++ F G V P +++ T
Sbjct: 106 GTPAVLLRTEDGGATW--KETYRAESE--TAFFDAMQFWDADRGMAVSDPVDGRLLVVET 161
Query: 189 SDAGESWER----IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGG---G 241
+D G+SW + IPL+ PG+ AF A ++ ADG LW G
Sbjct: 162 NDGGKSWRKVTNGIPLAR--PGEAAF--------AASNSSLLLGADGQLWFGTGGAESDT 211
Query: 242 LFLSKGTGITEEFEEVPV 259
L K +G + ++ VPV
Sbjct: 212 SRLYKRSGWDQPWDAVPV 229
>gi|398951909|ref|ZP_10674412.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM33]
gi|398155731|gb|EJM44166.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM33]
Length = 318
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 28/195 (14%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W+ ++ D L +AF D L G +G TLL T DGG+ W + +
Sbjct: 70 WQGIHTSADR--TLTGLAFANDRL--GIAVGHGATLLRTTDGGQQWTAVGVDGIGHDS-- 123
Query: 164 YRFNSISFKGKEGWIV-GKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRI 222
+++ G + ++ G L + DAG SW + + + +R +A+ +
Sbjct: 124 --LLGVTYLGGQHFVAYGAFGHYLESVDAGLSWSKKTVMG---------EDFDRHIAKVL 172
Query: 223 QNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA-G 281
+ G L+L G L S+ G+ E + P + FG G ++ A A G
Sbjct: 173 -----KVGGDLFLFGESGTLLRSRDLGLNWEALQSPYEGSFFG----GLQTPSGALLAFG 223
Query: 282 GSGVLLKTTNGGKTW 296
G L ++ + G TW
Sbjct: 224 MRGNLYRSNDRGDTW 238
>gi|333908757|ref|YP_004482343.1| BNR repeat-containing protein [Marinomonas posidonica IVIA-Po-181]
gi|333478763|gb|AEF55424.1| BNR domain-containing protein [Marinomonas posidonica IVIA-Po-181]
Length = 353
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 95 AKSEEAL-SAWERVYIPVDPG--VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP 151
+KS+ A A ER D G VLL A+ L F +G R +L + D G++W
Sbjct: 24 SKSQAATKDAMERAATQSDLGDHSVLLGAAYAGASL---FTVGERGLILRSNDNGESW-- 78
Query: 152 RSIPSAEEEDFNYRFNSISFKGK-EGWIVGKPAILLHTSDAGESWE 196
+ +PS + I+F K G+ +G I+L TS+ G+SW+
Sbjct: 79 QQVPSP----VSVTLTGIAFSDKNNGYAIGHSGIVLGTSNGGDSWQ 120
>gi|156337237|ref|XP_001619832.1| hypothetical protein NEMVEDRAFT_v1g223772 [Nematostella vectensis]
gi|156203771|gb|EDO27732.1| predicted protein [Nematostella vectensis]
Length = 321
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 185 LLHTSDAGESWERIPLSSQLP----GDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGG 240
++ T D G SW++IP +S LP G+ AF ++ V R N + GG +
Sbjct: 129 IIVTKDGGNSWQKIPCTS-LPKVEEGEAAFAASNSNVVLR--NNKIFIVSGG-----KKS 180
Query: 241 GLFLSKGTGITEEFEEVP-VQSRGF-GILDVGYRSQDEAWAAGG--------SGVLLKTT 290
F+S G+T E P VQ + GI + ++ + AGG S T
Sbjct: 181 RCFVSADKGVTWNVYETPIVQGKTMTGIFTADFYDENIGFIAGGDYENQENNSNNKAITE 240
Query: 291 NGGKTW 296
+GGKTW
Sbjct: 241 DGGKTW 246
>gi|291449055|ref|ZP_06588445.1| oxidoreductase [Streptomyces roseosporus NRRL 15998]
gi|291352002|gb|EFE78906.1| oxidoreductase [Streptomyces roseosporus NRRL 15998]
Length = 349
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 27/176 (15%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAI----LLHTSDAGE 193
+L T+DGG TW S D FN ++ F + G G P +L T+D G
Sbjct: 108 VLRTEDGGATW----TESFRNTDPRAFFNCLTFFDSRHGLAAGDPVDGKFRVLSTADGGR 163
Query: 194 SWERIP---LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
SW +P + + LPG+ F V+ +++ W GG + S+ G+
Sbjct: 164 SWRVLPDAGMPAALPGEAGFAASGQCLVSSGAKDV-WLTTGG----AETARVLHSRDRGL 218
Query: 251 --TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS--------GVLLKTTNGGKTW 296
T +P G+ V +R + A GG T +GG++W
Sbjct: 219 TWTASASALPAGDPARGVFAVAFRDRTHGIAVGGDYRPDQASPQAAAVTGDGGRSW 274
>gi|160012707|sp|P85303.1|P2SAF_SPIOL RecName: Full=Photosystem II stability/assembly factor HCF136,
chloroplastic
Length = 20
Score = 38.9 bits (89), Expect = 3.3, Method: Composition-based stats.
Identities = 15/20 (75%), Positives = 19/20 (95%)
Query: 98 EEALSAWERVYIPVDPGVVL 117
E++LS WERVY+P+DPGVVL
Sbjct: 1 EDSLSDWERVYLPIDPGVVL 20
>gi|442319062|ref|YP_007359083.1| glycosyl hydrolase [Myxococcus stipitatus DSM 14675]
gi|441486704|gb|AGC43399.1| glycosyl hydrolase [Myxococcus stipitatus DSM 14675]
Length = 620
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 18/162 (11%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
+L T DGG+TW+ ++ + +R + G W+ G + + D G +W +
Sbjct: 137 VLRTIDGGRTWSRIALARGDA----FRVYELERAGGRTWMCGSTDSIYRSDDTGATWREL 192
Query: 199 PLSSQLPGDMAFWQPHNRAVARRIQNM--GWRA--DGGLWLLVRGGGLFLSKGTGITEEF 254
P + + +R V + GW A G LW GG + T
Sbjct: 193 PGTP--------FNSDDRCVGLSFLDAKRGWAAGMKGSLWATEDGGATWSRMPTAWPPTP 244
Query: 255 EEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ Q R + DV + AW +G +TT+GGKTW
Sbjct: 245 DPFWPQ-RPTDLEDVALFTPKVAWVQSSAG-RFQTTDGGKTW 284
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 48/121 (39%), Gaps = 21/121 (17%)
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
+L T D G +W RI L+ R A R+ + RA G W+ ++
Sbjct: 137 VLRTIDGGRTWSRIALA--------------RGDAFRVYELE-RAGGRTWMCGSTDSIYR 181
Query: 245 SKGTGIT-EEFEEVPVQS--RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKA 301
S TG T E P S R G+ + WAAG G L T +GG TW R
Sbjct: 182 SDDTGATWRELPGTPFNSDDRCVGL---SFLDAKRGWAAGMKGSLWATEDGGATWSRMPT 238
Query: 302 A 302
A
Sbjct: 239 A 239
>gi|366163582|ref|ZP_09463337.1| oxidoreductase [Acetivibrio cellulolyticus CD2]
Length = 316
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 125 DDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI 184
+D + G L+G + TKDGGKTW+ + + ++ K + G
Sbjct: 72 EDDSTGILMGHHGAIHYTKDGGKTWSKAANEAHHVIGLDF------VDDKSVYCCGDQGT 125
Query: 185 LLHTSDAGESWERIPLSSQLPGDMAFWQP---HNRAVARRIQNMGWRADGG 232
+ +++DAG SW ++P L D + H +G +DGG
Sbjct: 126 IRYSNDAGASWTKLPEYDPLDQDPYIFTSFVNHKSGWVASTSKLGSTSDGG 176
>gi|332663502|ref|YP_004446290.1| oxidoreductase [Haliscomenobacter hydrossis DSM 1100]
gi|332332316|gb|AEE49417.1| oxidoreductase [Haliscomenobacter hydrossis DSM 1100]
Length = 335
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVG--KPAILLHTSDA 191
G+ T+ + DGG+ W ++ E+ DF + +F + I+G PA +L TSD
Sbjct: 51 GSAGTVGRSTDGGQNWQWMNVKGYEKTDFR---DIEAFDAQTAVIMGIASPAYMLKTSDG 107
Query: 192 GESWERI 198
G++W+R+
Sbjct: 108 GQNWQRV 114
>gi|91793083|ref|YP_562734.1| BNR repeat-containing protein [Shewanella denitrificans OS217]
gi|91715085|gb|ABE55011.1| BNR repeat protein [Shewanella denitrificans OS217]
Length = 335
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF-NYRFNSISFKGKEGWIVGKPAI 184
D G+ +G +++ T+DGG+TW + E+ F + RF F EG +G +
Sbjct: 87 DAKLGWAVGHDASIIHTQDGGQTWQLQMQSREIEKPFLDIRF----FNANEGIAIGAYGL 142
Query: 185 LLHTSDAGESWE 196
T D G++WE
Sbjct: 143 FYRTLDGGKTWE 154
>gi|88802956|ref|ZP_01118483.1| putative oxidoreductase [Polaribacter irgensii 23-P]
gi|88781814|gb|EAR12992.1| putative oxidoreductase [Polaribacter irgensii 23-P]
Length = 346
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 26/158 (16%)
Query: 158 EEEDFNYRFNSISF--KGKEGWIVGKP----AILLHTSDAGESWERIPLSSQLPGDM--- 208
+E N +++++F G VG P A +L T D GE+W +IP +LP +
Sbjct: 120 QEMHENVFYDALTFFEDAVHGIAVGDPTADCASILTTEDRGETWHKIPC-EKLPKILKGE 178
Query: 209 AFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVP-VQSRG-FGI 266
AF+ N + + I + W A GG + S G+T E E P +Q G GI
Sbjct: 179 AFFAASNTNI-KTIGSTVWIASGG-----TAARILKSTDYGLTWEIYETPIIQGIGPQGI 232
Query: 267 LDVGYRSQDEAWAAGGS------GVLLK--TTNGGKTW 296
+ + GG V K TT+GGKTW
Sbjct: 233 YSIDFYDDKNGIIIGGDYSKPMENVANKASTTDGGKTW 270
>gi|94967546|ref|YP_589594.1| hypothetical protein Acid345_0515 [Candidatus Koribacter versatilis
Ellin345]
gi|94549596|gb|ABF39520.1| conserved hypothetical protein [Candidatus Koribacter versatilis
Ellin345]
Length = 1147
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 24/225 (10%)
Query: 110 PVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED---FNYRF 166
P DP VV + +LN + L +++DGGK+W + +E + R
Sbjct: 161 PKDPNVVWVGTG----ELNSQRSVSYGDGLYKSEDGGKSWKKVGLEKSEHIARIVIDPRD 216
Query: 167 NSISFKGKEG--WIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQ-PHNRAVARRIQ 223
+++ + +G W G L T+D G++W+ + + S+ G Q P N V +
Sbjct: 217 SNVVYVAAQGPLWGPGGDRGLYKTTDGGKTWKNVLIISENTGVTDVAQDPSNPDV---LY 273
Query: 224 NMGWRADGGLWLLVRGG---GLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDE---- 276
++ +W L+ GG L+ S G T + + S G + + D
Sbjct: 274 AAAYQRQRRVWTLIDGGPESALYKSTDAGATWNKLKNGLPSVDMGRIGIAISPVDNNVVY 333
Query: 277 --AWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKK 319
AA G G + ++ + G +W + DN A +Y + + + K
Sbjct: 334 ATVEAAEGKGGIFRSRDRGASWEKRNPYDNTA--MYYAQIVADPK 376
>gi|385810284|ref|YP_005846680.1| Serine/threonine protein kinase [Ignavibacterium album JCM 16511]
gi|383802332|gb|AFH49412.1| Serine/threonine protein kinase [Ignavibacterium album JCM 16511]
Length = 628
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 271 YRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
+ +Q + G G L K+T+GG+ W K N A + + F+N+K GF++ ++G L
Sbjct: 526 FINQFLGFVGGADGNLFKSTDGGENW--SKLNINTVATINDIIFVNQKTGFIVTSEGELF 583
>gi|339626350|ref|YP_004717993.1| hypothetical protein TPY_0022 [Sulfobacillus acidophilus TPY]
gi|339284139|gb|AEJ38250.1| hypothetical protein TPY_0022 [Sulfobacillus acidophilus TPY]
Length = 585
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 19/169 (11%)
Query: 137 QTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPA--ILLHTSDAGES 194
Q L +T DGG+ W P +P D + + F G IVG P T D G +
Sbjct: 423 QHLWQTVDGGRQWTPIFLPDWTSAD---GLDMVDFLDSAG-IVGAPYENTSWWTVDGGAT 478
Query: 195 WERIPLSSQLPGDMAFWQPHNRAV-------ARRIQNMGWRADGGLWLLVRGGGLFLSKG 247
W R + L G + NRAV ++ I +G A+G + ++ LS
Sbjct: 479 WNRAQRETVLQGLGSL----NRAVTPKTLGESQEILEVG--ANGPVLWILGENRWALSTD 532
Query: 248 TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
G P G I D+ + + + W G G L +T +GG W
Sbjct: 533 NGTQWVTHSFPRNIVGGMIADLSFANAQDGWLESGLGQLYRTQDGGARW 581
>gi|379005819|ref|YP_005255270.1| hypothetical protein [Sulfobacillus acidophilus DSM 10332]
gi|361052081|gb|AEW03598.1| hypothetical protein Sulac_0021 [Sulfobacillus acidophilus DSM
10332]
Length = 607
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 19/169 (11%)
Query: 137 QTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPA--ILLHTSDAGES 194
Q L +T DGG+ W P +P D + + F G IVG P T D G +
Sbjct: 445 QHLWQTVDGGRQWTPIFLPDWTSAD---GLDMVDFLDSAG-IVGAPYENTSWWTVDGGAT 500
Query: 195 WERIPLSSQLPGDMAFWQPHNRAV-------ARRIQNMGWRADGGLWLLVRGGGLFLSKG 247
W R + L G + NRAV ++ I +G A+G + ++ LS
Sbjct: 501 WNRAQRETVLQGLGSL----NRAVTPKTLGESQEILEVG--ANGPVLWILGENRWALSTD 554
Query: 248 TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
G P G I D+ + + + W G G L +T +GG W
Sbjct: 555 NGTQWVTHSFPRNIVGGMIADLSFANAQDGWLESGLGQLYRTQDGGARW 603
>gi|254413203|ref|ZP_05026974.1| BNR/Asp-box repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
gi|196179823|gb|EDX74816.1| BNR/Asp-box repeat domain protein [Coleofasciculus chthonoplastes
PCC 7420]
Length = 792
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 23/171 (13%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFN-SISFKGKEGWIVGKPAILLHTSDAGESWER 197
+ ++ D GKTW S S+ E + RF S ++K + G L T++AG++W++
Sbjct: 551 VFQSSDAGKTWQSVSEDSSLGETSSIRFAISPNYKADKTVFAGTDRGLFVTTEAGKTWDK 610
Query: 198 IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLF--LSKGTGIT---- 251
+ S+ + N + + +++D + VRG GLF +++G T
Sbjct: 611 LSSSANI---------ENGYIEGVAISPNYQSDQTFIVSVRGEGLFKTVNRGQAFTPIGN 661
Query: 252 -----EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS-GVLLKTTNGGKTW 296
VP + Y + + + G + + K+T+GG TW
Sbjct: 662 NDLAFARINNVPCAGKPIQ-FSPAYATDNTLYGFGSAKSEIFKSTDGGNTW 711
>gi|300773818|ref|ZP_07083687.1| probable oxidoreductase [Sphingobacterium spiritivorum ATCC 33861]
gi|300759989|gb|EFK56816.1| probable oxidoreductase [Sphingobacterium spiritivorum ATCC 33861]
Length = 346
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV--GKPAILLHT 188
++ G+ T+ ++ DGGK+W + A E +++R + +F KE IV G PA++L T
Sbjct: 49 WISGSNGTVGKSLDGGKSW--DWVNPAGFESYDFR-DIQAFNAKEAVIVNAGSPAVILRT 105
Query: 189 SDAGESW 195
SD G++W
Sbjct: 106 SDGGKNW 112
>gi|448589541|ref|ZP_21649700.1| BNR repeat-containing protein [Haloferax elongans ATCC BAA-1513]
gi|445735969|gb|ELZ87517.1| BNR repeat-containing protein [Haloferax elongans ATCC BAA-1513]
Length = 330
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 19/178 (10%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV---GKPAILLHTSDAGESW 195
L T DGG+TW P + E S++ + +V +P+ + + D GE+W
Sbjct: 54 LFRTTDGGETWHPVGRDTVAES-----VTSLAISPDDPGVVYAGTEPSAVFRSRDGGETW 108
Query: 196 ERIPLSSQLPGDMAFW----QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
+P + LP + W +PH AR I+ + L++ V G L S G +
Sbjct: 109 SELPPLTGLPS-TSTWAFPPRPHTHH-ARWIE-IDPCDPQRLFVAVEAGALVTSPDGGES 165
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANL 309
+ VP R + WAA G G ++ +GG+TW E D + N
Sbjct: 166 -WVDRVPSSKRDVHSMATHRDRPGRIWAAAGDG-YAESDDGGETW--ETPTDGLRHNY 219
>gi|254483041|ref|ZP_05096276.1| BNR/Asp-box repeat domain protein [marine gamma proteobacterium
HTCC2148]
gi|214036726|gb|EEB77398.1| BNR/Asp-box repeat domain protein [marine gamma proteobacterium
HTCC2148]
Length = 381
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIRE 299
+VPV+S ILD+ + + + WA G G++L +++GGK+W ++
Sbjct: 98 DVPVRSS---ILDIHFPTPELGWAVGHEGIILHSSDGGKSWSKQ 138
>gi|448737513|ref|ZP_21719553.1| hypothetical protein C451_08268 [Halococcus thailandensis JCM
13552]
gi|445803657|gb|EMA53940.1| hypothetical protein C451_08268 [Halococcus thailandensis JCM
13552]
Length = 467
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 54/140 (38%), Gaps = 21/140 (15%)
Query: 121 AFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVG 180
AFV D + G L T Q++ ET DGG+++ I ED N F I+ E +
Sbjct: 332 AFV--DSDRGHLCDTNQSVYETTDGGESFDRVGI-----EDANAAFTDIAASTAETLVTA 384
Query: 181 KPAILLHTSDAGESWERIPLSSQ------LPGDMAFWQPHNRAVARRIQNMGWRA----- 229
L G W R+ S L G+ F AV R+ GW A
Sbjct: 385 DDGSLFRHD--GAVWTRLRPSEDALAAVALAGETGFAAGDGGAVYERMDG-GWEAVETPT 441
Query: 230 DGGLWLLVRGGGLFLSKGTG 249
D LW + G ++ G G
Sbjct: 442 DADLWGIAIGSERVVAVGAG 461
>gi|411002025|ref|ZP_11378354.1| putative oxidoreductase [Streptomyces globisporus C-1027]
Length = 362
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 27/176 (15%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS-FKGKEGWIVGKPAI----LLHTSDAGE 193
+L T+DGG TW S D FN ++ F + G G P +L T+D G
Sbjct: 121 VLRTEDGGATW----TESFRNTDPRAFFNCLTFFDSRHGLAAGDPVDGKFRVLSTADGGR 176
Query: 194 SWERIP---LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
SW +P + + LPG+ F V+ +++ W GG + S+ G+
Sbjct: 177 SWRVLPDAGMPAALPGEAGFAASGQCLVSSGAKDV-WLTTGG----AETARVLHSRDRGL 231
Query: 251 --TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS--------GVLLKTTNGGKTW 296
T +P G+ V +R + A GG T +GG++W
Sbjct: 232 TWTASASTLPAGDPARGVFAVAFRDRAHGIAVGGDYRPDQASPQAAAVTGDGGRSW 287
>gi|429214134|ref|ZP_19205298.1| BNR/Asp-box repeat-containing protein [Pseudomonas sp. M1]
gi|428155729|gb|EKX02278.1| BNR/Asp-box repeat-containing protein [Pseudomonas sp. M1]
Length = 367
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 36/194 (18%)
Query: 126 DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWI--VGKPA 183
D NH +G +L + D G+ W R + + N + G G VG+
Sbjct: 130 DANHLVAVGNDGVILHSDDAGRHW--RLADAVPRSAVANKLNRVRV-GPAGLAIAVGEMG 186
Query: 184 ILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA-----DGGLWLLVR 238
LL + D G W+R+ R +++ W DG L ++
Sbjct: 187 ALLVSHDFGAHWQRL---------------------REEEDVAWNDAALLDDGRLVVVGE 225
Query: 239 GGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIR 298
G + LS+ G +EE+P G ++ V +R A G G LL T +GG+ W
Sbjct: 226 FGRILLSQDLG--AHWEEIPAPVPG-SLMAVRFRDAANGVAVGVEGTLLVTRDGGRQW-- 280
Query: 299 EKAADNIAANLYSV 312
+ + +L+SV
Sbjct: 281 QPVGLGVHDHLFSV 294
>gi|402568834|ref|YP_006618178.1| glycosyl hydrolase [Burkholderia cepacia GG4]
gi|402250031|gb|AFQ50484.1| glycosyl hydrolase [Burkholderia cepacia GG4]
Length = 319
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 117/303 (38%), Gaps = 45/303 (14%)
Query: 1 MGSSLRLSEPMMLVKPSLSSLFAPRLNRTNAQAQQPRFISTS-RACSLPSSDSSSS---S 56
+G++L P L ++++ RL R ++ R L S D+ +
Sbjct: 15 VGAALFAFSPRPLPAFPVTAIHGDRLQINGLARAGTRIVAVGERGVILLSDDAGRRWRPA 74
Query: 57 SSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVV 116
S + S+L + F++ T L G + +S++ W V++ D
Sbjct: 75 SVTPDQGSTLTQVNFITPT--------LGIAVGHDGRIVRSDDGGVHWREVHMDHDHSDP 126
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LL + D F G+ LL + D G +W P+ + N+I G
Sbjct: 127 LLSVWGTAD--GPLFAAGSFGQLLRSNDAGVSWQTVKTPAGDRH-----LNAIVGDGHGN 179
Query: 177 WIV-GKPAILLHTSDAGESWERI--PLSSQLPGDMAF----WQPHN-RAVARRIQNMG-- 226
++ G+ LL ++D G +W+++ P + L G + W + R R + G
Sbjct: 180 LLIAGESGTLLRSTDNGVTWDKLASPYAGSLFGALMLANGDWVAYGMRGNVVRSTDHGTT 239
Query: 227 WR----------------ADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVG 270
W ADG L L+ +GG + S+ G+T + ++ +LD+G
Sbjct: 240 WTHVDSHVPVSYFGATQLADGELVLVGQGGAIVASRDGGLTFDVRKLGGVQSLAAVLDMG 299
Query: 271 YRS 273
+ S
Sbjct: 300 HGS 302
>gi|425439500|ref|ZP_18819822.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9717]
gi|389720262|emb|CCH96015.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9717]
Length = 775
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 15/217 (6%)
Query: 83 SLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLD-IAFVPDDLNHGFLLGTRQTLLE 141
++AA GL + + + W ++ P L+ +A P++ N F + L
Sbjct: 142 NIAAAVGLEKGVYLTADGGKNWSNIF----PTTALITFLAITPNNPNRIFFGDEQGKLYS 197
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP-- 199
+ DGGKTW +P+ F+ + K ++ K A + T D G+S++ +
Sbjct: 198 SSDGGKTWQNLPLPANVGAVDTIAFSPNLDRDKTFFVGTKEAGIFKTVDDGKSFQAVNEG 257
Query: 200 LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPV 259
+ ++ D+ + A + + W G+++ GG + G+T++ +
Sbjct: 258 IKDKIIEDIVISPQY--AQNSTLYAITWYE--GMYVSQDGGKSWTKMSEGLTKDKQADDY 313
Query: 260 QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ F L + QD + G +G L KTT+ GK W
Sbjct: 314 KVPHFMNLKI---VQDTMFLGGFNG-LFKTTDSGKQW 346
>gi|440717181|ref|ZP_20897672.1| hypothetical protein RBSWK_04731 [Rhodopirellula baltica SWK14]
gi|436437648|gb|ELP31266.1| hypothetical protein RBSWK_04731 [Rhodopirellula baltica SWK14]
Length = 359
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV--GKPAILLHTSDA 191
G T++ + DGG+TW P + +F +F I G PA+LL T D
Sbjct: 61 GAEATVIRSIDGGETWQPCGPAGFDGLEFRC---VCAFSANVACIASAGTPAVLLRTEDG 117
Query: 192 GESWE---RIPLSSQLPGDMAFWQ 212
GE+W+ R S M FW
Sbjct: 118 GETWKETYRAESESAFFDAMQFWD 141
>gi|167043235|gb|ABZ07942.1| putative binding-protein-dependent transport system inner membrane
component [uncultured marine microorganism
HF4000_ANIW141L21]
Length = 774
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/200 (19%), Positives = 83/200 (41%), Gaps = 38/200 (19%)
Query: 170 SFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDM-------AFWQPHNRAVARRI 222
S+ G+ + G ++L + D G +W + LSS D+ A + P + R
Sbjct: 59 SYDGESVFAFGSGGVILQSDDKGSTW--VQLSSPATADLRRSDSTEAVYDPFTGDL-REK 115
Query: 223 QNMGWRADGGLWLLVRGG----------------GLFLSKGTGITE--------EFEEVP 258
DGG L+ G G+ ++ T + +++
Sbjct: 116 GAFAVVGDGGAAYLLAVGSDTWQNISLESAVDFRGVAMTSATSLVTVGPSGAIWQYQSEA 175
Query: 259 VQSRGFGIL----DVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKF 314
R GI D+ + +A G +G++L T +GG++W +A + + AN+ +V +
Sbjct: 176 WTQRDSGIASDLNDISFLDGSSGFAVGDNGMILATDDGGQSWEYREAPEGLVANIVAVDY 235
Query: 315 INEKKGFVLGNDGVLLQYLG 334
+ + + + ++G +++ +G
Sbjct: 236 YSAIRAYAITDEGHIVKSVG 255
>gi|322371181|ref|ZP_08045733.1| hypothetical protein ZOD2009_16843 [Haladaptatus paucihalophilus
DX253]
gi|320549171|gb|EFW90833.1| hypothetical protein ZOD2009_16843 [Haladaptatus paucihalophilus
DX253]
Length = 326
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG---WIVGKPAILLHTSDAGESW 195
L ++DGG+ S S EE S++ + W+ +P+ + ++D G+SW
Sbjct: 48 LFRSEDGGE-----SFQSVGEETIRESVMSLAIDPTDPDTVWVGTEPSAVYRSTDGGDSW 102
Query: 196 ERIPLSSQLPGDMAFW----QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251
ER + LP + W +PH V R I+ + + L++ + G L + G T
Sbjct: 103 ERREGLTDLPSE-PNWSFPPRPHTHHV-RWIEPDPYDPN-HLYVGIEAGALVQTYDAGET 159
Query: 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
E ++VP L + + W+A G G ++ NGG+TW
Sbjct: 160 WE-DKVPTARVDNHSLATHPDAPGQVWSAAGDG-YAESENGGETW 202
>gi|386286802|ref|ZP_10063986.1| photosystem II stability/assembly factor-like protein [gamma
proteobacterium BDW918]
gi|385280184|gb|EIF44112.1| photosystem II stability/assembly factor-like protein [gamma
proteobacterium BDW918]
Length = 336
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 21/132 (15%)
Query: 165 RFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQN 224
R S+ F G VG+ +++ TSDAG++W + + L G ++ +R +A +
Sbjct: 42 RLFSVDFNKDSGVAVGEAGLIMRTSDAGKTWTKEASPTTL-GLISVAHSGDREIA--VGQ 98
Query: 225 MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSG 284
M G+ ++ G + TG V + SRG + A G G
Sbjct: 99 M------GVAIIRFGSSEWKLADTGSDMRLLNVDINSRGLAV------------ATGAFG 140
Query: 285 VLLKTTNGGKTW 296
LL++ +GG++W
Sbjct: 141 TLLRSKDGGESW 152
>gi|333896623|ref|YP_004470497.1| hypothetical protein Thexy_0784 [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111888|gb|AEF16825.1| hypothetical protein Thexy_0784 [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 314
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 54/247 (21%)
Query: 93 QPAKSEEALSAWERVYIPVD--PGVVLLDIAF---VPD--DLNHGFLL-----GTRQTLL 140
Q KS + ++W + +P++ P D+ VP D N+G++ T ++
Sbjct: 63 QIFKSTDRGNSWTEINLPINVFPKDAYSDVYVENVVPYFLDSNNGWISWINNSDTTLYVI 122
Query: 141 ETKDGGKTWAPRS--IPSAEEEDFNYRFNSISFKGKEGW--IVGKPAI------LLHTSD 190
+T DGGKTW S +P + +F GW +V A+ LL T+D
Sbjct: 123 KTTDGGKTWNKLSYKLPQLSQSISKIQF----VTQNTGWLLVVSDSAVEQQIKYLLKTND 178
Query: 191 AGESWERIPLSSQLP----------GDMAFWQPHN--RAVARRIQNMGWRADGGLWLLVR 238
G++W+++ ++S P DM F+ N V+ I AD L+ V
Sbjct: 179 GGKTWQKVNVTSSDPYSGLPIVGTSTDMIFYGTDNGWIGVSNPIS-----ADVILYKTVD 233
Query: 239 GGGLFLSKGTGITEEFEE-------VPV-QSRGFGILDVG-YRSQDEAWAAGGSGVLLKT 289
GG + + +E+ VP+ + G L++ YR+ D + V T
Sbjct: 234 GGNTWSKVSVPTPQGYEKYCILSASVPIFKDDKNGTLNIDFYRTNDG--KSENHTVTYVT 291
Query: 290 TNGGKTW 296
+GG TW
Sbjct: 292 NDGGNTW 298
>gi|302557144|ref|ZP_07309486.1| LOW QUALITY PROTEIN: oxidoreductase [Streptomyces griseoflavus
Tu4000]
gi|302474762|gb|EFL37855.1| LOW QUALITY PROTEIN: oxidoreductase [Streptomyces griseoflavus
Tu4000]
Length = 259
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 25/228 (10%)
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK 172
P V +A V D +L GTR T+L T DGG +W S P AEE F + +F
Sbjct: 33 PDVRFRGLAAVSRDT--AWLAGTRGTVLRTTDGGGSWRNVSPPGAEELQFR---DIEAFD 87
Query: 173 GKEGWIV----GKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWR 228
+ ++ G+ + + T D G +W ++ AF+ AR M
Sbjct: 88 ARRAVVLAIGEGEASRVYRTDDGGATWTESFRNTDA---RAFYDCLTFFDARHGLAMSDP 144
Query: 229 ADGGLWLL-VRGGGLFLS--KGTGITEEFE-EVPVQSRGFGILDVGYRSQDEAWAAGGSG 284
DG +L R GG + TG+ E E + G ++ G + + W A G
Sbjct: 145 VDGRFRILSTRDGGRSWTVLPDTGMPPALEGEAGFAASGQCLVSAGPK---DVWLATGGA 201
Query: 285 V---LLKTTNGGKTWIREKAA---DNIAANLYSVKFINEKKGFVLGND 326
+L + + G+TW + + A ++++ F + G +G D
Sbjct: 202 ARARVLHSADRGRTWTVTGTSVPGGDPARGIFALAFRDRVHGLAVGGD 249
>gi|153000954|ref|YP_001366635.1| BNR repeat-containing protein [Shewanella baltica OS185]
gi|151365572|gb|ABS08572.1| BNR repeat protein [Shewanella baltica OS185]
Length = 338
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDF 162
+W +V PV L + F+ D L G+ +G T+L T+DGG+ W + E+ F
Sbjct: 69 SWHQVATPVSSQ--LTKVFFLNDKL--GWAVGHDATILHTQDGGQIWQQQMHSPEIEKPF 124
Query: 163 NYRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
+ + K G +G + T+D G W
Sbjct: 125 ---LDVVFLDEKMGIAIGAYGLFYRTNDGGVHW 154
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 258 PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINE 317
PV S+ + V + + WA G +L T +GG+ W ++ + I V F++E
Sbjct: 76 PVSSQ---LTKVFFLNDKLGWAVGHDATILHTQDGGQIWQQQMHSPEIEKPFLDVVFLDE 132
Query: 318 KKGFVLGNDGVL 329
K G +G G+
Sbjct: 133 KMGIAIGAYGLF 144
>gi|404400086|ref|ZP_10991670.1| BNR repeat-containing protein [Pseudomonas fuscovaginae UPB0736]
Length = 353
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LL ++F D HG ++G LET DGG+TW +S +++ +G +
Sbjct: 155 LLALSFA--DAQHGLVVGAYGLALETADGGRTW--QSGMGRLPNPRGLHLYALARQGADL 210
Query: 177 WIVGKPAILLHTSDAGESWERI 198
++ G+ +LL + D G ++ +
Sbjct: 211 YVAGEQGLLLRSRDGGAHFDAL 232
>gi|152997152|ref|YP_001341987.1| BNR domain-containing protein [Marinomonas sp. MWYL1]
gi|150838076|gb|ABR72052.1| BNR domain protein [Marinomonas sp. MWYL1]
Length = 361
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
VLL + V D H +G R +L + D GK+W S P + +SF E
Sbjct: 56 VLLSVTSVGD---HFVAVGERGLILRSDDDGKSWHQLSSP------VSVTLTGVSFFDDE 106
Query: 176 -GWIVGKPAILLHTSDAGESWE 196
G+ +G I+L T++AG W+
Sbjct: 107 NGYAIGHGGIVLRTTNAGNDWK 128
>gi|440756814|ref|ZP_20936014.1| BNR/Asp-box repeat family protein [Microcystis aeruginosa TAIHU98]
gi|440172843|gb|ELP52327.1| BNR/Asp-box repeat family protein [Microcystis aeruginosa TAIHU98]
Length = 775
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 92/217 (42%), Gaps = 15/217 (6%)
Query: 83 SLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLL-DIAFVPDDLNHGFLLGTRQTLLE 141
++AA GL + +E+ W ++ P L+ +A P + + F + L
Sbjct: 142 NIAAAVGLEKGVYLTEDGGKNWSNIF----PTTALITSLAITPSNPDQIFFGDEQGKLYT 197
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP-- 199
+ DGGKTW +P+ F+ + K ++ K A + T D G++++ +
Sbjct: 198 SSDGGKTWQNLPLPANMGAVDTIAFSPNLDRDKTFFVGTKEAGIFKTVDDGKTFQAVNEG 257
Query: 200 LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPV 259
+ ++ D+ + A + + W G+++ GG + G+T++ +
Sbjct: 258 IKDKIIEDIVI--SPDYAQNSTLYAITWH--DGMYVSQDGGKSWKKMSEGLTKDKQADDY 313
Query: 260 QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ F L + QD + G +G L KTT+ GK W
Sbjct: 314 KVPHFMDLKI---VQDTMFLGGFNG-LFKTTDSGKQW 346
>gi|448609585|ref|ZP_21660616.1| BNR repeat-containing glycosyl hydrolase [Haloferax mucosum ATCC
BAA-1512]
gi|445746602|gb|ELZ98063.1| BNR repeat-containing glycosyl hydrolase [Haloferax mucosum ATCC
BAA-1512]
Length = 320
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI-SFKGKEGWIVGKPAILLHTS 189
TR L ++D G+TW P IP + ++ + S G+ + PA L ++
Sbjct: 48 LFAATRSGLFRSRDSGRTWTPLGIPRSAV------YSVVQSPTGERLYAGTHPAHLYVST 101
Query: 190 DAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL--VRGGGLFLSKG 247
D G SW + +P ++ P R A ++++ D ++ V GG+ +S
Sbjct: 102 DNGGSWRELEGFRDVPSRETWYTPRYRDKA-HVRSLAVHPDSPDRVIAGVEVGGVLVSDD 160
Query: 248 TGI--TEEFEEVPVQSRGFGILDVGY--RSQDEAWAAGGSGVLLKTTNGGKTWIREKAAD 303
G+ TE + + + DV + +A+ G L +T + G +W R +D
Sbjct: 161 CGVSWTEHRAGLETERQDGLQYDVHHVLALSGDAFVVSCGGGLYRTRDAGHSWTRLPDSD 220
Query: 304 N 304
Sbjct: 221 R 221
>gi|379731024|ref|YP_005323220.1| BNR repeat-containing glycosyl hydrolase [Saprospira grandis str.
Lewin]
gi|378576635|gb|AFC25636.1| BNR repeat-containing glycosyl hydrolase [Saprospira grandis str.
Lewin]
Length = 315
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 124 PDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI-SFKGKEGWIVGKP 182
PD LN F+ G ++ +T+DGG++W + + S + + YR+ SI + + GK
Sbjct: 211 PDSLN-AFVAGDYGSVYKTEDGGESW--QKLLSGQTMNPKYRWRSILALDQNRLAVGGKD 267
Query: 183 AILLHTSDAGESWERI 198
LL + D GE+W+++
Sbjct: 268 GALLLSYDGGENWQKL 283
>gi|392405423|ref|YP_006442035.1| ribonuclease BN [Turneriella parva DSM 21527]
gi|390613377|gb|AFM14529.1| ribonuclease BN [Turneriella parva DSM 21527]
Length = 789
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGK 174
VVL I F+ D G ++G LL+T DGG TW P A + + ++
Sbjct: 321 VVLRRIQFITD--RQGLIIGNDGLLLKTVDGGDTWKP-----AYQANVRSNLRQVARVRA 373
Query: 175 EGW-IVGKPAILLHTSDAGESW 195
W ++G+ + L TSD GE++
Sbjct: 374 GLWAVLGEEGVALTTSDGGETF 395
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 29/204 (14%)
Query: 132 LLGTRQTLLETKDGGKTWAPRSI-PSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTS- 189
+LG + L D GK + ++I P+ D++ + ++ +V + ++ S
Sbjct: 207 ILGDKHVFLVQSDKGKPYKEKNILPNI---DYDAENAVVVLDHEKNVVVDQSQTDIYQSA 263
Query: 190 ---DAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK 246
D G+ + I + F + +NR + DGG+ L+ + GG
Sbjct: 264 ARADKGQLQKAIFVD--------FARTNNREI--------LITDGGVILVSKDGGAIYHA 307
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIA 306
T E + V + + + + + + G G+LLKT +GG TW + N+
Sbjct: 308 KKFYTLEDDRV----KDVVLRRIQFITDRQGLIIGNDGLLLKTVDGGDTW-KPAYQANVR 362
Query: 307 ANLYSVKFINEKKGFVLGNDGVLL 330
+NL V + VLG +GV L
Sbjct: 363 SNLRQVARVRAGLWAVLGEEGVAL 386
>gi|345848918|ref|ZP_08801935.1| hypothetical protein SZN_04316 [Streptomyces zinciresistens K42]
gi|345639558|gb|EGX61048.1| hypothetical protein SZN_04316 [Streptomyces zinciresistens K42]
Length = 289
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 62/158 (39%), Gaps = 33/158 (20%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
L++TKD G+TW RS+ + E DF+ S EG + G + SD + W+
Sbjct: 117 LIDTKDAGQTWTSRSL--SGEADFH------SLDSAEGTVYGYEGGRIRVSDDLKRWDDR 168
Query: 199 PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVP 258
L D+A + +A + + D GG KG+G + F P
Sbjct: 169 ATLEAL--DIAVSPAGDTLLATTAEGVVTSTD---------GGRTFDKGSGQVQAFLSWP 217
Query: 259 VQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ FGI SG+L + N GKTW
Sbjct: 218 SEKSLFGIDT--------------SGILSSSANSGKTW 241
>gi|378950403|ref|YP_005207891.1| neuraminidase [Pseudomonas fluorescens F113]
gi|359760417|gb|AEV62496.1| Neuraminidase (sialidase) [Pseudomonas fluorescens F113]
Length = 346
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGT----RQTLLETKDGGKTW--APRSIPSA 157
W+RV P + G + +A P D F+ GT R L T DGG+TW AP IP
Sbjct: 71 WQRVDSPFN-GQTVWKVAVDPQDAQRIFV-GTGAPSRAVLWRTLDGGQTWERAPVEIPEF 128
Query: 158 EEEDFNYRFNSISFKGKEG---WIVGKPAILLHTSDAGESWERI 198
+ R + ++ + W + L H+ D G+SW R+
Sbjct: 129 CDGVSRPRLLAFAYDPTDRNQLWFGLEEGGLFHSRDGGDSWTRV 172
>gi|332530733|ref|ZP_08406662.1| hypothetical protein HGR_12347 [Hylemonella gracilis ATCC 19624]
gi|332039823|gb|EGI76220.1| hypothetical protein HGR_12347 [Hylemonella gracilis ATCC 19624]
Length = 380
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 26/164 (15%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAG 192
G R ++ + D GK+W +P + ++ F + GW VG ++L T D G
Sbjct: 60 GERGLIVHSDDDGKSWVQARVP------VSVTLTALCFADARVGWAVGNMGVVLLTEDGG 113
Query: 193 ESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252
SW + L G+ AR +Q G R D G G+ + + + E
Sbjct: 114 ASWRK-----SLDGEAG--AQLALQAARALQASGGRTDSG-----GPAGMLIEEAQRLVE 161
Query: 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
E + P +L V +R G G+ + +GGK+W
Sbjct: 162 EGSDKP-------LLGVAWREDGSLLVVGAYGLAYASKDGGKSW 198
>gi|398993252|ref|ZP_10696205.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM21]
gi|398135241|gb|EJM24364.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM21]
Length = 379
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDA 191
+G R ++ ++D G+TW +P + + +++F GW VG I+L TSD
Sbjct: 76 VGWRGHIVYSEDQGRTWRQAQVPVSVD------LTAVTFASATAGWAVGHGGIILRTSDG 129
Query: 192 GESWER 197
G SW +
Sbjct: 130 GLSWSK 135
>gi|348029299|ref|YP_004871985.1| BNR repeat-containing protein [Glaciecola nitratireducens FR1064]
gi|347946642|gb|AEP29992.1| BNR repeat-containing protein [Glaciecola nitratireducens FR1064]
Length = 347
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 101 LSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEE 160
LSA P+ +LLDIA V D + ++G R +L T + S+P+
Sbjct: 20 LSANSSYQAPLVKESLLLDIA-VGDSI---VIVGERGHIL-TGTTQQDLVQVSVPTRT-- 72
Query: 161 DFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQL--PGDMAFWQPHNRAV 218
+++ G W VG A +LH+SDAG++W+ +L P F+ N V
Sbjct: 73 ----TLTAVALSGVNAWAVGHDASILHSSDAGQNWQTQLSMPELDRPFLDVFFMDENNGV 128
Query: 219 ARRIQNMGWRA-DGGL-WLLVRGGGLFLSKGTGITEEFEEVPV---QSRGFGILDVGYRS 273
A + +R DGG+ W+ + E ++ P + F + S
Sbjct: 129 AVGAYGLFYRTIDGGVTWIKELHASVLPQDDIDYLESIKDDPAFYEEELSFILPHFNRLS 188
Query: 274 QDEA--WAAGGSGVLLKTTNGGKTWIR 298
+ + AG +G+L + + G++W R
Sbjct: 189 YTDGRLYMAGEAGMLAVSEDFGRSWRR 215
>gi|73541263|ref|YP_295783.1| BNR repeat-containing glycosyl hydrolase [Ralstonia eutropha
JMP134]
gi|72118676|gb|AAZ60939.1| Glycosyl hydrolase, BNR repeat protein [Ralstonia eutropha JMP134]
Length = 324
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 94/235 (40%), Gaps = 22/235 (9%)
Query: 97 SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156
S++ +W + G L +AF D HG +G +L T+DGG+ W +
Sbjct: 63 SDDQGRSWRGASVDQPQGATLTQVAFA--DSRHGMAVGHSGWILRTEDGGEHWQQAAF-- 118
Query: 157 AEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNR 216
+ E + + + G + VG L + D G+ WE + +P M
Sbjct: 119 -DAESSDPLLGAWAQAGGTWFAVGSFGRFLVSRDLGKHWED-GAAKGMPEAMK------- 169
Query: 217 AVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDE 276
R + + A G L L+ G + S G E + P + +G L + +D
Sbjct: 170 --DRHLNGISGDAQGRLMLVGEAGLVLRSADGGEHWEAVKAPYEGSLYGALSL----RDG 223
Query: 277 AWAA-GGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
AW A G G +L++ + G TW + A + + + + + + + G G L+
Sbjct: 224 AWMAFGMRGNVLRSEDFGTTW--QVAETGLKTSFFGGVMLPDGRIVLAGQGGSLV 276
>gi|425433735|ref|ZP_18814213.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9432]
gi|389675712|emb|CCH95214.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9432]
Length = 775
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 92/217 (42%), Gaps = 15/217 (6%)
Query: 83 SLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLL-DIAFVPDDLNHGFLLGTRQTLLE 141
++AA GL + +E+ W ++ P L+ +A P + + F + L
Sbjct: 142 NIAAAVGLEKGVYLTEDGGKNWSNIF----PTTALITSLAITPSNPDRIFFGDEQGKLYT 197
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP-- 199
+ DGGKTW +P+ F+ + K ++ K A + T D G++++ +
Sbjct: 198 SSDGGKTWQNLPLPANMGAVDTIAFSPNLDRDKTFFVGTKEAGIFKTVDDGKTFQAVNEG 257
Query: 200 LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPV 259
+ ++ D+ + A + + W G+++ GG + G+T++ +
Sbjct: 258 IKDKIIEDIVI--SPDYAQNSTLYAITWH--DGMYVSQDGGKSWKKMSEGLTKDKQADDY 313
Query: 260 QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ F L + QD + G +G L KTT+ GK W
Sbjct: 314 KVPHFMDLKI---VQDTMFLGGFNG-LFKTTDSGKQW 346
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 87 TTGLYEQPAKSEEALSAWERVYIPVDPGVV-LLDIAFVPDDLNHGFLLGTRQTLLETKDG 145
+ G+Y KSE+A +W++V ++ + L+IA P D N +G + + T+DG
Sbjct: 106 SNGIY----KSEDAGESWQKVNQGLETNFINFLEIA--PSDPNIAAAVGLEKGVYLTEDG 159
Query: 146 GKTWA---PRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSS 202
GK W+ P + + I F ++G L +SD G++W+ +PL +
Sbjct: 160 GKNWSNIFPTTALITSLAITPSNPDRIFFGDEQG-------KLYTSSDGGKTWQNLPLPA 212
Query: 203 QLPG-DMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQS 261
+ D + P+ + R + G++ V G F + GI ++ E V S
Sbjct: 213 NMGAVDTIAFSPN---LDRDKTFFVGTKEAGIFKTVDDGKTFQAVNEGIKDKIIEDIVIS 269
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW-------IREKAADNIAANLYSVKF 314
Y +A + + +GGK+W ++K AD+ +
Sbjct: 270 P-------DYAQNSTLYAITWHDGMYVSQDGGKSWKKMSEGLTKDKQADDYKVPHFMDLK 322
Query: 315 INEKKGFVLGNDGVL 329
I + F+ G +G+
Sbjct: 323 IVQDTMFLGGFNGLF 337
>gi|441500624|ref|ZP_20982779.1| putative oxidoreductase [Fulvivirga imtechensis AK7]
gi|441435602|gb|ELR68991.1| putative oxidoreductase [Fulvivirga imtechensis AK7]
Length = 333
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 133 LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV----GKPAILLHT 188
LGT+ L+ T DGG W +IP A+ DF + +F +E + G + + T
Sbjct: 43 LGTQGGLIRTTDGGANWHKINIPGADSLDFR---DVQAFGDQECIAMSAGSGGASRIYKT 99
Query: 189 SDAGESWERIPLSSQLPG---DMAFWQPHNRAVA 219
D G +W+ + ++ G MAFW + +A
Sbjct: 100 LDGGATWKLVKQNTHENGFYNGMAFWGENTGVLA 133
>gi|357409929|ref|YP_004921665.1| oxidoreductase [Streptomyces flavogriseus ATCC 33331]
gi|320007298|gb|ADW02148.1| putative oxidoreductase [Streptomyces flavogriseus ATCC 33331]
Length = 367
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 259 VQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEK 318
Q+R G+ VG +D AW AG GV+L+TT+GG+ W A L ++ + +
Sbjct: 50 TQARFRGLAAVG---RDTAWVAGSGGVVLRTTDGGRHWRDVSPAGAAGLELRDIEAFDRR 106
Query: 319 KGFVL 323
+ L
Sbjct: 107 RAVAL 111
>gi|407802161|ref|ZP_11149003.1| BNR repeat-containing protein [Alcanivorax sp. W11-5]
gi|407023836|gb|EKE35581.1| BNR repeat-containing protein [Alcanivorax sp. W11-5]
Length = 356
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 112 DPGVVLLDIAFVP------DDLNHGFLLGTRQTLLETKDGGKTW--APRSIPSAEEEDFN 163
D G ++D + P D H +G ++ET+DGG +W A R + +A+ F
Sbjct: 147 DEGAAMVDTSGAPLLDVWCDSTRHAIAVGGYGYMVETRDGGDSWQQANRDMDNADGWHF- 205
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
Y ++ + +I G+ L + D GE+W ++
Sbjct: 206 YSIAPLNGEPDTLFISGEKGTLYRSRDRGETWTKL 240
>gi|344201426|ref|YP_004786569.1| putative oxidoreductase [Muricauda ruestringensis DSM 13258]
gi|343953348|gb|AEM69147.1| putative oxidoreductase [Muricauda ruestringensis DSM 13258]
Length = 343
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 21/146 (14%)
Query: 166 FNSISF-KGKEGWIVGKPA----ILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVAR 220
++S++F EG VG ++ T D G SW ++ S LP + A A
Sbjct: 127 YDSLAFWNDTEGIAVGDTVDGCLSIIVTRDGGTSWTKLACS-DLPEGI----EDEGAFAA 181
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSR--GFGILDVGYRSQDEAW 278
N+ + + +W+ G ++ S G+T E +E P+ S+ GI + + ++ +
Sbjct: 182 SNSNIAVQGNK-VWIGTTEGRIYYSSDKGMTWEIQETPIVSKEPTQGIYSLDFFDENTGF 240
Query: 279 AAGGSGVL--------LKTTNGGKTW 296
A GG +KT +GGKTW
Sbjct: 241 AIGGDYTQPGSNRANKIKTVDGGKTW 266
>gi|375144902|ref|YP_005007343.1| oxidoreductase [Niastella koreensis GR20-10]
gi|361058948|gb|AEV97939.1| oxidoreductase [Niastella koreensis GR20-10]
Length = 338
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 134 GTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVG--KPAILLHTSDA 191
G++ T+ + DGGKTW ++ E+ DF + +F I+G +PA +L T+D
Sbjct: 50 GSKGTVGRSLDGGKTWQWMNVKGFEQTDFR---DIEAFNANTAIIMGIAEPAYILKTTDG 106
Query: 192 GESWERI 198
G +W+ +
Sbjct: 107 GANWKVV 113
>gi|291302412|ref|YP_003513690.1| hypothetical protein Snas_4958 [Stackebrandtia nassauensis DSM
44728]
gi|290571632|gb|ADD44597.1| conserved hypothetical protein [Stackebrandtia nassauensis DSM
44728]
Length = 357
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 78 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGT-- 135
++LSI + +Y +++ +W + +P +AF D HG +
Sbjct: 107 VALSIGEGEASRVY----VTDDGGDSWHNSFTNAEPKAFYDCMAFF--DAKHGVAMSDPV 160
Query: 136 --RQTLLETKDGGKTW---APRSIPSAEEEDFNYRFNS---ISFKGKEGWIV---GKPAI 184
R + T DGG +W P P A +F + + ++ + G++V G+ A
Sbjct: 161 DGRIRFITTDDGGHSWDMLPPERSPEALAGEFAFAASGQCLVAADKRNGYLVTGGGETAR 220
Query: 185 LLHTSDAGESWE 196
++HT D G+SWE
Sbjct: 221 VIHTPDRGQSWE 232
>gi|392965000|ref|ZP_10330420.1| hypothetical protein BN8_01469 [Fibrisoma limi BUZ 3]
gi|387846383|emb|CCH52466.1| hypothetical protein BN8_01469 [Fibrisoma limi BUZ 3]
Length = 487
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 276 EAWAAGGSGVLLKTTNGGKTW--IREKAADNIAANLYSVKFINEKKGFV 322
+A+ GG+ VLL++ N GKTW IRE +I + Y + +N + GFV
Sbjct: 391 QAFGTGGNLVLLESRNAGKTWQRIRELTPGSIRNHTYPRRPVNSQPGFV 439
>gi|442611066|ref|ZP_21025772.1| FIG002465: BNR repeat protein [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441746994|emb|CCQ11834.1| FIG002465: BNR repeat protein [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 385
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 24/103 (23%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS-AEEEDFNY------------ 164
LDI F D G +G L ET DGGK+W R + EED Y
Sbjct: 170 LDIVF--HDALSGIAIGAYGMLFETSDGGKSWQKRFLEDLLLEEDRAYLADLKASDPDSY 227
Query: 165 ---------RFNSISFKGKEGWIVGKPAILLHTSDAGESWERI 198
FN + G IVG+ ++ + D G +W+R+
Sbjct: 228 NDETAFMLPHFNRFAKHGDTWVIVGEMGLVAISEDKGATWQRL 270
>gi|390934605|ref|YP_006392110.1| hypothetical protein Tsac_1504 [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570106|gb|AFK86511.1| hypothetical protein Tsac_1504 [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 605
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 26/172 (15%)
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS--FKGKEGWIVGKPAILL 186
+G+ + + +++L+T DGGKTW +P E N +F ++ + EG L
Sbjct: 106 YGWAISSDKSILKTTDGGKTWI--ELPKMNENIENIKFVTVDRGYGTHEG-------KLY 156
Query: 187 HTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL-WLLVRGGGLFLS 245
T+D G +WE I ++++ D + A ++ + DGG+ W + L
Sbjct: 157 ITNDGGRTWESI--NTKIKIDSYDFVDQYHGFASYNNSIYYTRDGGISWNFIYNPYLQGQ 214
Query: 246 KGTGITE-EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
I+ + + V RG + S++E ++LKT +GGK+W
Sbjct: 215 WNVEISALDINNIWVIYRG------KWTSENEE-----PYLILKTADGGKSW 255
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 233 LWLLVRGGGLFLSKGTGITE---------EFEEVPVQSRGFGILDVGYRSQDEAWAAGGS 283
L + + G G+ ++ GI + EF + FG+ + + + + WA GG
Sbjct: 15 LTVFLTGCGISKTQENGINDTTYKINRNIEFSYNLNNAPKFGLQAIYFINGKDGWA-GGQ 73
Query: 284 GVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
G++L T +GGK W E + N+ F+N G+ + +D +L+
Sbjct: 74 GIILSTNDGGKNWTVEHTG---SFNIIGFDFVNSIYGWAISSDKSILK 118
>gi|425444179|ref|ZP_18824235.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9443]
gi|389730482|emb|CCI05235.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9443]
Length = 775
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 104/254 (40%), Gaps = 33/254 (12%)
Query: 87 TTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGG 146
+ G+Y KSE+A +W++V ++ + + P D N +G + + T+DGG
Sbjct: 106 SNGIY----KSEDAGESWQKVNQGLETNFINF-VQIAPSDANIAAAVGLEKGVYLTEDGG 160
Query: 147 KTWAPRSIPSAEEEDFNYRFNS---ISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQ 203
K W+ +A N+ I F ++G L +SD G++W+ +PL +
Sbjct: 161 KNWSNIFPTTALITSLAITPNNPGRIFFGDEQG-------KLYTSSDGGKTWQNLPLPAN 213
Query: 204 LPG-DMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSR 262
+ D + P+ + R + G++ V G F + GI ++ E V S
Sbjct: 214 VGAVDTIAFSPN---LDRDKTFFVGTKEAGIFKTVDDGKTFQAVNEGIKDKIIEDIVISP 270
Query: 263 GFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW-------IREKAADNIAANLYSVKFI 315
+ Y W G + + +GGK+W ++K AD+ + +
Sbjct: 271 DYAQNSTLYAI---TWYEG----MYVSQDGGKSWTKMSEGLTKDKQADDYKVPHFMDLKV 323
Query: 316 NEKKGFVLGNDGVL 329
E F+ G +G+
Sbjct: 324 VEDTMFLGGFNGLF 337
>gi|172061603|ref|YP_001809255.1| hypothetical protein BamMC406_2562 [Burkholderia ambifaria MC40-6]
gi|171994120|gb|ACB65039.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
Length = 425
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 133 LGTRQT-LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDA 191
L +RQT + ++ DGG+ W+ + P E+ D + + + G+ +G+ + TSD
Sbjct: 151 LVSRQTRVWKSLDGGRHWSQMAWPEHEDID-----DLLFIDAQHGYAIGRGPTVRRTSDG 205
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL 233
GESW+ I LP D P R R N+G DG L
Sbjct: 206 GESWQLI----ALPPDAVV--PSGRRRNLRAVNLG--PDGTL 239
>gi|170697576|ref|ZP_02888665.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
gi|170137463|gb|EDT05702.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
Length = 455
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 133 LGTRQT-LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDA 191
L +RQT + ++ DGG+ W+ + P E+ D + + + G+ +G+ + TSD
Sbjct: 181 LVSRQTRVWKSLDGGRHWSQMAWPEHEDID-----DLLFIDAQHGYAIGRGPTVRRTSDG 235
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL 233
GESW+ I LP D P R R N+G DG L
Sbjct: 236 GESWQLI----ALPPDAVV--PSGRRRNLRAVNLG--PDGTL 269
>gi|429753836|ref|ZP_19286605.1| BNR/Asp-box repeat protein [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429171468|gb|EKY13087.1| BNR/Asp-box repeat protein [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 459
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI 315
E+P+ G+ + ++ ++ W + G V+ KTT+GG TW +E A++ LY + +
Sbjct: 390 EIPI-----GVRSLAFQDENTGWQSSGK-VIYKTTDGGNTWQKEFEAESNIKKLYYTQNV 443
Query: 316 NEKKGFVLGNDGVLLQY 332
+ +DG+L +Y
Sbjct: 444 ----LYAFADDGLLYRY 456
>gi|425464173|ref|ZP_18843495.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9809]
gi|389833871|emb|CCI21241.1| Glycosyl hydrolase, BNR repeat-containing protein [Microcystis
aeruginosa PCC 9809]
Length = 775
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 92/217 (42%), Gaps = 15/217 (6%)
Query: 83 SLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLL-DIAFVPDDLNHGFLLGTRQTLLE 141
++ A GL + +E+ W ++ P L+ +A P++ + F + L
Sbjct: 142 NIVAAVGLEKGVYLTEDGGKNWSNIF----PTTALITSLAITPNNPDRIFFGDEQGKLYS 197
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIP-- 199
+ DGGKTW +P+ F+ + K ++ K A + T D G+S++ +
Sbjct: 198 SSDGGKTWQNLPLPANVGAVDTIAFSPNLDRDKTFFVGTKEAGIFKTVDDGKSFQAVNEG 257
Query: 200 LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPV 259
+ ++ D+ + A + + W G+++ GG + G+T++ +
Sbjct: 258 IKDKIIEDIVISPQY--AQNSTLYAITWY--DGMYVSQDGGKSWTKMSEGLTKDQQADDY 313
Query: 260 QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
+ F L + QD + G +G L KTT+ GK W
Sbjct: 314 KVPHFMDLKI---VQDTMFLGGFNG-LFKTTDSGKQW 346
>gi|333897502|ref|YP_004471376.1| hypothetical protein Thexy_1675 [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112767|gb|AEF17704.1| hypothetical protein Thexy_1675 [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 605
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
FG+ + + + + WA GG G++L T +GGK W E + N+ F+N G+ +
Sbjct: 55 FGLQAIHFINGKDGWA-GGQGIILSTNDGGKNWTVEHTG---SFNIIGFDFVNSIYGWAI 110
Query: 324 GNDGVLLQ 331
+D +L+
Sbjct: 111 SSDRSILK 118
>gi|386851959|ref|YP_006269972.1| Ycf48-like protein [Actinoplanes sp. SE50/110]
gi|359839463|gb|AEV87904.1| Ycf48-like protein [Actinoplanes sp. SE50/110]
Length = 352
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 273 SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
S AW AG +G +L+T +GG+TWI AD A ++ + + L
Sbjct: 48 SATVAWVAGSAGTILRTVDGGRTWISVGPADAAALQFRDIEAFDARHAVAL 98
>gi|115352740|ref|YP_774579.1| hypothetical protein Bamb_2689 [Burkholderia ambifaria AMMD]
gi|115282728|gb|ABI88245.1| hypothetical protein Bamb_2689 [Burkholderia ambifaria AMMD]
Length = 455
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 133 LGTRQT-LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDA 191
L +RQT + ++ DGG+ W+ + P E+ D + + + G+ +G+ + TSD
Sbjct: 181 LVSRQTRVWKSLDGGRHWSQMAWPEHEDID-----DLLFIDAQHGYAIGRGPTVRRTSDG 235
Query: 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL 233
GESW+ I LP D P R R N+G DG L
Sbjct: 236 GESWQLI----ALPPDAVV--PSGRRRNLRAVNLG--PDGTL 269
>gi|312131697|ref|YP_003999037.1| oxidoreductase [Leadbetterella byssophila DSM 17132]
gi|311908243|gb|ADQ18684.1| oxidoreductase, putative [Leadbetterella byssophila DSM 17132]
Length = 331
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 31/132 (23%)
Query: 136 RQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGK-EGWIVGKPA----ILLHTSD 190
+ ++++ D GKTW + + E F F+ I FK G+I+G P LL T D
Sbjct: 96 KAVVIKSGDKGKTWR-KVLQKTEPGTF---FDGIKFKSPWTGFILGDPIDAYPYLLKTVD 151
Query: 191 AGESWERIPLSSQLP-------------------GDMAFWQPHNRAVARRIQNMGWRADG 231
AGE+WER+ LP GD ++ NR W+
Sbjct: 152 AGETWERV---KNLPPIEEGEASFASSNSGIATLGDNIWFHTQNRVFHSNNSGEYWQVHN 208
Query: 232 GLWLLVRGGGLF 243
L+L + G+F
Sbjct: 209 TLFLKGKSQGIF 220
>gi|330752427|emb|CBL87378.1| conserved hypothetical protein, secreted [uncultured Flavobacteriia
bacterium]
Length = 431
Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 185 LLHTSDAGESW----ERIPLSSQLPGDMAFWQPHNRAVA--RRIQNMGWRADG---GLWL 235
L T++AG +W E+ P S G + P N + +N+G R G G++
Sbjct: 74 LWKTTNAGTTWNCITEKQPFYST--GSVTL-DPSNSQIVWLGTGENVGGRHVGIGHGIYY 130
Query: 236 LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295
GG ++SKG +E +V V I+ V +Q W++GG L K+ +GGKT
Sbjct: 131 SSNGGKNWISKGLEKSEHISKVIVHPTNSDIIWVA--AQGPLWSSGGERGLYKSIDGGKT 188
Query: 296 W 296
W
Sbjct: 189 W 189
>gi|408793932|ref|ZP_11205537.1| virulence factor BrkB domain protein [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408461167|gb|EKJ84897.1| virulence factor BrkB domain protein [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 786
Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 112 DPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF 171
DP + + I F D GF+L L +T DGG T+ P+ I N I+F
Sbjct: 332 DPAITPIRIRFFSD--KDGFILDREGRLWKTSDGGITFFPQEISPKP-------LNDIAF 382
Query: 172 KGKE-GWIVGKPAILLHTSDAGESW 195
+ G++VG + T D G +W
Sbjct: 383 LNRNVGFLVGDSGAVFKTVDGGYTW 407
>gi|374985407|ref|YP_004960902.1| putative oxidoreductase [Streptomyces bingchenggensis BCW-1]
gi|297156059|gb|ADI05771.1| putative oxidoreductase [Streptomyces bingchenggensis BCW-1]
Length = 379
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 25/211 (11%)
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV----GKPAILL 186
++ G++ T+L T DGG++W S P AE +F + +F + ++ G+ + +
Sbjct: 80 WVAGSKGTVLRTHDGGRSWRNVSPPGAEGLEFR---DIEAFDARRAVVLAIGEGEASRVF 136
Query: 187 HTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG----- 241
T DAG +W S + AF+ AR + DG +L G G
Sbjct: 137 RTDDAGATWTE---SFRNTDPHAFYDCLTFFDARNGIALSDPVDGKYRVLATGDGGRSWR 193
Query: 242 LFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAW-AAGGSGV--LLKTTNGGKTWIR 298
+ S G + E + G ++ G R +AW A GG+ + + + G+TW
Sbjct: 194 VLPSDGMPAAQPGEAA-FAAGGQCLVSAGRR---DAWFATGGAATARVFHSADRGRTWTV 249
Query: 299 EKA---ADNIAANLYSVKFINEKKGFVLGND 326
A A + A ++++ F + + G +G D
Sbjct: 250 ADAPLPAGDPARGVFALAFRDARTGLAVGGD 280
>gi|223935227|ref|ZP_03627145.1| Immunoglobulin I-set domain protein [bacterium Ellin514]
gi|223896111|gb|EEF62554.1| Immunoglobulin I-set domain protein [bacterium Ellin514]
Length = 523
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 40/211 (18%)
Query: 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAI----------LLH 187
+++ DGG W ++ + ++ + FK GW VG +
Sbjct: 159 FIKSTDGGTNW---TMVNLTAQNVMNGIMDVYFKDPTNGWAVGMDTHSFSSPPYYGRIAR 215
Query: 188 TSDAGESWERIPLSSQLPGDMAFWQ---PHNRAVARRIQNMGWRADGGLWLLVRGGGLFL 244
T+D G +W P+ + + FW+ P +Q G + + GG ++
Sbjct: 216 TTDGGATWT--PVVTTTIANCYFWKMSWPATNIGYVALQQNGSSSTIVFYKTTDGGNNWV 273
Query: 245 SKGTGITEEFEEVPVQSRG---FGILDVGYRSQDEAWAAGGSGV------LLKTTNGGKT 295
S G +P+ S G F + +G+ + +E W GGS V L TT+GG T
Sbjct: 274 SNG---------IPLSSVGAASFYLQGLGFVNTNEGWM-GGSSVAPYSTSFLHTTDGGAT 323
Query: 296 WIREKAADNIAANLYSVKFINEKKGFVLGND 326
W ++ N ++F++ GF G +
Sbjct: 324 WQAAGYSNTFFIN--RIRFLSPTLGFASGGN 352
>gi|398843744|ref|ZP_10600870.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM84]
gi|398255266|gb|EJN40297.1| putative photosystem II stability/assembly factor-like protein
[Pseudomonas sp. GM84]
Length = 316
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 32/219 (14%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
L +AFV + G +G TLL T DGG W S ++ ++ G E
Sbjct: 76 TLAGVAFV--NPQRGVAVGHGGTLLRTDDGGLHWQAVETDSGDDA-----LLGVAALG-E 127
Query: 176 GWIV--GKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGL 233
G +V G + L ++D G++W+R+ + + +R +++ I G
Sbjct: 128 GRLVAWGAFGLYLLSTDQGQTWQRLSV---------LGEDFDRHISQVIA-----LANGD 173
Query: 234 WLLVRGGGLFLSKGTGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTN 291
WL+V G L++ T E ++ + P Q FG L + G G L + +
Sbjct: 174 WLMVGESGT-LARSTDQGEHWQALQSPYQGSLFGALQL---KDGGLLIYGMRGNLWYSAD 229
Query: 292 GGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330
GG+TW + + A N + + ++GN G+LL
Sbjct: 230 GGQTWQQRQTGTTFALN--GAVQLRSGRVLLMGNSGLLL 266
>gi|433655646|ref|YP_007299354.1| BNR/Asp-box repeat protein [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293835|gb|AGB19657.1| BNR/Asp-box repeat protein [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 486
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 43/226 (19%)
Query: 139 LLETKDGGKTWAPRS--IPSAEEEDFNYRFNSISFKGKEGWIVG--------KPAILLHT 188
+L+T DGGKTW S +P + +F GW++ + L T
Sbjct: 120 ILKTTDGGKTWNKLSYKLPQLSQSISKIQF----VTPNTGWLLAVSDGAAEQQIKYLFRT 175
Query: 189 SDAGESWERIPLSSQ-----LP-----GDMAFWQPHN--RAVARRIQNMGWRADGGLWLL 236
+D G++WE+I ++S LP DM F+ N V+ I AD L+
Sbjct: 176 NDGGKTWEKINVTSSDSYSGLPLVGTSTDMIFYGVDNGWVGVSNPIS-----ADVILYRT 230
Query: 237 VRGGGLFLSKGTGITEEFEE-------VPV-QSRGFGILDVG-YRSQDEAWAAGGSGVLL 287
V GG + + +E+ VPV + G L++ YR+ D + V
Sbjct: 231 VDGGNTWSKVSVPTLQGYEKYCIVSASVPVFKDDKNGTLNIDFYRTNDG--KSENHTVTY 288
Query: 288 KTTNGGKTWIREKAADNIAANLY-SVKFINEKKGFVLGNDGVLLQY 332
T +GG TW AD+ +++ + E K F L + V+ Y
Sbjct: 289 VTNDGGNTWSTNVYADDENKHIFVKLNTKGETKKFDLTDYVVMKNY 334
>gi|212557085|gb|ACJ29539.1| Glycosyl hydrolase, BNR repeat protein [Shewanella piezotolerans
WP3]
Length = 338
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W++V P L F+ + G+ +G T+L T+DGGKTW + + ++ F
Sbjct: 69 WQQVATP--TAAQLTKAFFISE--TQGWAVGHDATILHTEDGGKTWQLQMQSAEVDKPF- 123
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
+ + F G +G + T+D G +W
Sbjct: 124 --LDLLFFDENNGIAIGAYGLFYRTTDGGNNW 153
>gi|149918401|ref|ZP_01906891.1| hypothetical protein PPSIR1_35712 [Plesiocystis pacifica SIR-1]
gi|149820701|gb|EDM80111.1| hypothetical protein PPSIR1_35712 [Plesiocystis pacifica SIR-1]
Length = 1122
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 134 GTRQTLLETKDGGKTWAP-----------RSIPSAEEEDFNYRFNSISFKGKEGWIVGKP 182
G + L +T DGG+TW P + + D Y + ++ G P
Sbjct: 179 GGERGLYKTTDGGETWKPVLSAGPWTGVTDVVIDPRDPDLLYAATWQRHRTVAAYVGGGP 238
Query: 183 AILLHTS-DAGESWERIPLSSQLPGDMAFW-----QPHNRAVARRIQ--NMG 226
+H S D GE+W R LS LPGD +F +P +R A+ I NMG
Sbjct: 239 ESGIHKSVDGGETWTR--LSKGLPGDPSFKAGGEDKPGSRPAAKPIDDGNMG 288
>gi|284034342|ref|YP_003384273.1| putative photosystem II stability/assembly protein [Kribbella
flavida DSM 17836]
gi|283813635|gb|ADB35474.1| Putative protein related to photosystem II stability/assembly
factor [Kribbella flavida DSM 17836]
Length = 365
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 273 SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
S+D AW AG +G +L+TT+GG +W A A V+ + K+ +L
Sbjct: 58 SKDVAWVAGSAGRVLRTTDGGTSWQNVSPAGAAALQFRDVEAFDAKRAVIL 108
>gi|320102754|ref|YP_004178345.1| hypothetical protein Isop_1210 [Isosphaera pallida ATCC 43644]
gi|319750036|gb|ADV61796.1| hypothetical protein Isop_1210 [Isosphaera pallida ATCC 43644]
Length = 1180
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 232 GLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTN 291
GL+ + GG F G ++E ++ + R ++ V +Q W +GG L KTT+
Sbjct: 223 GLYKSIDGGKSFRKVGLEMSEHIAKILIDPRNTNVVYVA--AQGPLWNSGGERGLYKTTD 280
Query: 292 GGKTWIREKAADN 304
GG +W R D+
Sbjct: 281 GGASWNRVLHIDD 293
>gi|171319337|ref|ZP_02908448.1| glycosyl hydrolase BNR repeat-containing protein [Burkholderia
ambifaria MEX-5]
gi|171095444|gb|EDT40414.1| glycosyl hydrolase BNR repeat-containing protein [Burkholderia
ambifaria MEX-5]
Length = 425
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 133 LGTRQT-LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDA 191
L +RQT + ++ DGG+ W+ + P E ED N + + + G+ +G+ + TS+
Sbjct: 151 LVSRQTRVWKSLDGGRHWSQMAWP--EHEDIN---DLLFVDAQHGYAIGRGPTVRRTSNG 205
Query: 192 GESWERI--PLSSQLPG 206
GESW+ I P + +PG
Sbjct: 206 GESWQLIALPPDAVVPG 222
>gi|433654655|ref|YP_007298363.1| putative photosystem II stability/assembly factor-like protein
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433292844|gb|AGB18666.1| putative photosystem II stability/assembly factor-like protein
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 604
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
F IL + + WA +L +TTNGGKTW ++AN+ ++KF+ KG+ L
Sbjct: 94 FNILAFDFVNSIYGWAISDKSIL-RTTNGGKTWTE---LPKLSANITNIKFVTVDKGYGL 149
Query: 324 GNDGVLL 330
D + +
Sbjct: 150 SGDKLYV 156
>gi|157375615|ref|YP_001474215.1| BNR repeat-containing protein [Shewanella sediminis HAW-EB3]
gi|157317989|gb|ABV37087.1| BNR repeat protein [Shewanella sediminis HAW-EB3]
Length = 341
Score = 37.4 bits (85), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 15/163 (9%)
Query: 37 RFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAK 96
RF+S +L S S +S ++ SSS + ++ L ++ A T + E+
Sbjct: 7 RFVSVCLIAALFLSPVSQASDANGSSS---QIQPLAIESIILDIATKGATTVAVGERGHV 63
Query: 97 ---SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPR- 152
+ E W +V P L + F+ +L G+ +G T++ T D G TW +
Sbjct: 64 FILNGEKEGLWTQVSTPTQAH--LTKVFFITPEL--GWAVGHDATIIHTIDAGLTWQLQM 119
Query: 153 SIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESW 195
P E+ + F F + G +G + TSD G++W
Sbjct: 120 GSPEIEKPLMDILF----FDEQNGVAIGAYGLFYRTSDGGKTW 158
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,503,336,826
Number of Sequences: 23463169
Number of extensions: 247682716
Number of successful extensions: 1600234
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 1250
Number of HSP's that attempted gapping in prelim test: 1477051
Number of HSP's gapped (non-prelim): 70769
length of query: 334
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 191
effective length of database: 9,003,962,200
effective search space: 1719756780200
effective search space used: 1719756780200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 77 (34.3 bits)