BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036387
         (334 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XBG|A Chain A, Crystal Structure Of Ycf48 From Thermosynechococcus
           Elongatus
          Length = 327

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 146/302 (48%), Gaps = 81/302 (26%)

Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
           WE + +P      +LD++F+  D +HG+L+G   TL+ET+DGG+TW PR++     +  +
Sbjct: 27  WEAIQLPTT--ATILDMSFI--DRHHGWLVGVNATLMETRDGGQTWEPRTL---VLDHSD 79

Query: 164 YRFNSISFKGKEGWIVGKPAILLH------------------------------------ 187
           YRFNS+SF+G EGWIVG+P I+LH                                    
Sbjct: 80  YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT 139

Query: 188 -------TSDAGESW--------------------ERIPLSSQ-------LPGDMAFWQP 213
                  T D+G++W                    E + +SS+        PG  A W+P
Sbjct: 140 NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA-WEP 198

Query: 214 HNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEV--PVQSRGFGILDVGY 271
           HNR  +RR+ NMG+  D              S     +E + E+  P++    G LD+ Y
Sbjct: 199 HNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAY 257

Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
           R+ +E W AGG+G LL + +GG+TW ++     + +N Y + F +  +GF+LG  G+LL+
Sbjct: 258 RTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLR 317

Query: 332 YL 333
           Y+
Sbjct: 318 YV 319


>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa
           Hydrolase In Complex With Quercetin
          Length = 363

 Score = 31.2 bits (69), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI 169
           H F  G R  L++ KD    W P  +    EED N  F S+
Sbjct: 310 HDFHEGVRAVLID-KDQSPKWKPADLKEVTEEDLNNHFKSL 349


>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21
 pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21
 pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21
 pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21
 pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P212121
 pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P212121
 pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P212121
 pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P212121
          Length = 351

 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGF---VLGNDGVLLQY 332
           G+ W +    ++   +LYSVKF     G     LGNDG+L  Y
Sbjct: 97  GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY 139


>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
 pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
          Length = 349

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGF---VLGNDGVLLQY 332
           G+ W +    ++   +LYSVKF     G     LGNDG+L  Y
Sbjct: 95  GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY 137


>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
 pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
           Space Group P21212
          Length = 351

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGF---VLGNDGVLLQY 332
           G+ W +    ++   +LYSVKF     G     LGNDG+L  Y
Sbjct: 97  GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY 139


>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
           Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
 pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
           Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
 pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
           Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
 pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
           Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
 pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
           Complex With A Sulfonylurea Herbicide, Chlorsulfuron
 pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
           Complex With A Sulfonylurea Herbicide, Chlorsulfuron
 pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
           Complex With A Sulfonylurea Herbicide, Sulfometuron
           Methyl
 pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
           Complex With A Sulfonylurea Herbicide, Sulfometuron
           Methyl
 pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
           Complex With A Sulfonylurea Herbicide, Metsulfuron
           Methyl
 pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
           Complex With A Sulfonylurea Herbicide, Metsulfuron
           Methyl
 pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
           Complex With A Sulfonylurea Herbicide, Metsulfuron
           Methyl
 pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
           Complex With A Sulfonylurea Herbicide, Metsulfuron
           Methyl
          Length = 677

 Score = 28.1 bits (61), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 257 VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFIN 316
           +P   +G G +  GY     A A+G  GV+L T+  G T +    AD  A  +  V F  
Sbjct: 125 LPKHEQGAGHMAEGY-----ARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTG 179

Query: 317 EKKGFVLGND 326
           +     +G D
Sbjct: 180 QVPTSAIGTD 189


>pdb|3B7F|A Chain A, Crystal Structure Of A Putative Glycosyl Hydrolase With
           Bnr Repeats (reut_b4987) From Ralstonia Eutropha Jmp134
           At 2.20 A Resolution
          Length = 394

 Score = 28.1 bits (61), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 3/31 (9%)

Query: 180 GKPAILLHTSDAGESWERIPLSSQLPGDMAF 210
           GKPA+ + T DAGESW+R      LP D A+
Sbjct: 311 GKPAVYV-TRDAGESWQR--QDRGLPTDQAW 338


>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
           Acetohydroxyacid Synthase: A Target For Herbicidal
           Inhibitors
 pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
           Acetohydroxyacid Synthase: A Target For Herbicidal
           Inhibitors
          Length = 630

 Score = 28.1 bits (61), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 257 VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFIN 316
           +P   +G G +  GY     A A+G  GV+L T+  G T +    AD  A  +  V F  
Sbjct: 78  LPKHEQGAGHMAEGY-----ARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTG 132

Query: 317 EKKGFVLGND 326
           +     +G D
Sbjct: 133 QVPTSAIGTD 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,276,785
Number of Sequences: 62578
Number of extensions: 377532
Number of successful extensions: 805
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 22
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)