BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036387
(334 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5Z5A8|P2SAF_ORYSJ Photosystem II stability/assembly factor HCF136, chloroplastic
OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1
Length = 416
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 164/392 (41%), Positives = 209/392 (53%), Gaps = 120/392 (30%)
Query: 59 SSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEE--ALSAWERVYIPVDPGVV 116
+ + S S RR+F++ TAT S + ++ A++++ +LS WERV +P+DPGVV
Sbjct: 29 AHTDSISTGRRRFIADTATASAAAAVGPLVLPRTPLARADQPPSLSEWERVLLPIDPGVV 88
Query: 117 LLDIAFVP-----------------------------------DDLNH-----------G 130
LLDIAFVP +D N+ G
Sbjct: 89 LLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDEDFNYRFNSVSFMGKEG 148
Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSD 190
+++G LL T D G +W IP + + N + + + + + AI + TS+
Sbjct: 149 WIIGKPAILLHTSDAGDSW--ERIPLSAQLPGNMVYIKATGEQSAEMVTDEGAIYV-TSN 205
Query: 191 AGESWE---------------------------------------RIPLSSQ-------L 204
G +W+ + +SS+
Sbjct: 206 RGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWE 265
Query: 205 PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTG--------------- 249
PG FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG+G
Sbjct: 266 PG-QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGFQFFYRGLNDAHAIS 324
Query: 250 -------ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
ITE+FEE VQSRGFGILDVGYRS+DEAWAAGGSGVLLKTTNGGKTW+R+KAA
Sbjct: 325 YLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWVRDKAA 384
Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
DNIAANLYSVKF+ + KG+VLGNDGVLL+Y+G
Sbjct: 385 DNIAANLYSVKFLGDNKGYVLGNDGVLLRYVG 416
>sp|O82660|P2SAF_ARATH Photosystem II stability/assembly factor HCF136, chloroplastic
OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1
Length = 403
Score = 238 bits (607), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 109/125 (87%), Positives = 123/125 (98%)
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDV 269
+WQPHNRAVARRIQNMGWRADGGLWLLVRGGGL+LSKGTGITEEFEEVPVQSRGFGILDV
Sbjct: 279 YWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDV 338
Query: 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVL 329
GYRS++EAWAAGGSG+LL+T NGGK+W R+KAADNIAANLY+VKF+++KKGFVLGNDGVL
Sbjct: 339 GYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVL 398
Query: 330 LQYLG 334
L+Y+G
Sbjct: 399 LRYVG 403
Score = 214 bits (546), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 131/228 (57%), Positives = 160/228 (70%), Gaps = 26/228 (11%)
Query: 3 SSLRLSEPMMLVKPSLSSLFAPRLNRTNAQAQQPRFISTSRACSL----PSSDSSSSSSS 58
+SL+L + +L KPS+S PRF+S + L SS S S S
Sbjct: 2 ASLQLCDGYLLFKPSVS----------------PRFLSQRISHRLIPKASSSPPPSPSPS 45
Query: 59 SSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLL 118
SSSSS S +RR+ + Q+A +SLS+S PA+++E LS WERV++P+DPGVVLL
Sbjct: 46 SSSSSLSFSRRELLYQSAAVSLSLSSIVG------PARADEQLSEWERVFLPIDPGVVLL 99
Query: 119 DIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWI 178
DIAFVPD+ + GFLLGTRQTLLETKDGG TW PRSIPSAEEEDFNYRFNSISFKGKEGWI
Sbjct: 100 DIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPRSIPSAEEEDFNYRFNSISFKGKEGWI 159
Query: 179 VGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
+GKPAILL+T+DAGE+W+RIPLSSQLPGDM F + A + + G
Sbjct: 160 IGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEG 207
>sp|Q8DI95|YC48L_THEEB Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1)
GN=tll1695 PE=1 SV=1
Length = 347
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 160/314 (50%), Gaps = 83/314 (26%)
Query: 94 PAKSEEAL--SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAP 151
PA + AL + WE + +P +LD++F+ D +HG+L+G TL+ET+DGG+TW P
Sbjct: 35 PALAIPALDYNPWEAIQLPTT--ATILDMSFI--DRHHGWLVGVNATLMETRDGGQTWEP 90
Query: 152 RSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH------------------------ 187
R++ + YRFNS+SF+G EGWIVG+P I+LH
Sbjct: 91 RTLVLDHSD---YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLI 147
Query: 188 -------------------TSDAGESW--------------------ERIPLSSQ----- 203
T D+G++W E + +SS+
Sbjct: 148 KALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS 207
Query: 204 --LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEV--PV 259
PG A W+PHNR +RR+ NMG+ DG LW++V GG + S +E + E+ P+
Sbjct: 208 TWEPGQTA-WEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPL 265
Query: 260 QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKK 319
+ G LD+ YR+ +E W AGG+G LL + +GG+TW ++ + +N Y + F + +
Sbjct: 266 RRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ 325
Query: 320 GFVLGNDGVLLQYL 333
GF+LG G+LL+Y+
Sbjct: 326 GFILGQKGILLRYV 339
>sp|P48325|P2SAF_CYAPA Photosystem II stability/assembly factor HCF136 OS=Cyanophora
paradoxa GN=hcf136 PE=3 SV=1
Length = 333
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 147/305 (48%), Gaps = 81/305 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
WE+ IP++ +LLDI FVPD G+LLGTR TL ET D GKTW RS+ ED
Sbjct: 33 WEQ--IPLNTDEILLDIGFVPDQPQRGWLLGTRSTLFETTDKGKTWELRSL---NLEDDK 87
Query: 164 YRFNSISFKGKEGWIV--------------------------GKPAIL------------ 185
YR NSISF GKEGW+ G PA++
Sbjct: 88 YRLNSISFSGKEGWVTGKPAILLHTTDGGSSWSRIPLSNQLPGDPALITALGTGKAELAT 147
Query: 186 -----LHTSDAGESWE---RIPL------------------------SSQLPGDMAFWQP 213
T ++G++W+ + PL S+ GD W
Sbjct: 148 DIGAIYRTENSGQTWKAQIQEPLGVIRTVARSENGSYVAVSAKGNFYSTWKEGDDK-WIS 206
Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG-----FGILD 268
H R +RRIQ+MG+ + LW+L RGG L+ S E E P G G+L+
Sbjct: 207 HPRQSSRRIQSMGFTNNNRLWMLTRGGQLWFSSNDSFDEPNWEGPKTPEGKVGFGLGLLN 266
Query: 269 VGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328
+ +++ E W +GGSG+LL + + G TW +E + DNI +N Y + FI+++ GFVLGN G
Sbjct: 267 LAFKTPTEIWVSGGSGILLSSQDTGNTWKKETSTDNIPSNFYKISFIDKEVGFVLGNQGT 326
Query: 329 LLQYL 333
LL+Y+
Sbjct: 327 LLRYV 331
>sp|Q8RSW4|YC48L_SYNP2 Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27264 / PCC
7002 / PR-6) GN=SYNPCC7002_A0229 PE=3 SV=1
Length = 340
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/338 (32%), Positives = 158/338 (46%), Gaps = 90/338 (26%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
++ ++ A L L I G + P SE + W+ + + D +IAF DDL
Sbjct: 12 KKAIAAIAVLVLCI------GCVQAPTISE---NPWQEIDLNTDS--TFANIAFT-DDLQ 59
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI---- 184
HG+L+GT++TL ET DGGKTWA R I +E++ F +SF G+EGWI G+P+I
Sbjct: 60 HGWLVGTKETLFETTDGGKTWAERVIDLGDEKE---SFTGVSFSGQEGWITGRPSILLHT 116
Query: 185 ---------------------------------------LLHTSDAGESWERIP------ 199
+ T+D G++W+ +
Sbjct: 117 DDGGEHWSRIALSSQLPGAPYNITALGPNTAEMVTDLGAIYKTTDGGKNWKALVEGAVGV 176
Query: 200 ---------------------LSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
S+ PGD W PHNR +RR+Q+MG+ + LWLL R
Sbjct: 177 ARTIERSADGKYVAVSARGNFYSTWSPGDTE-WTPHNRNSSRRLQSMGFNGEDKLWLLAR 235
Query: 239 GGGLFLSKGTGI--TEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGK 294
GG + S T E + E P G+L +GYR+ E WA GGSG ++ + +GG
Sbjct: 236 GGVVQFSDDTNPDNAEAWSEPVTPQYRNSVGLLHIGYRTPAELWAVGGSGSVVVSKDGGD 295
Query: 295 TWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
TW R+ A + I N Y V F+NE KGF+LG GV+L+Y
Sbjct: 296 TWFRDAALEEIPTNFYRVVFLNENKGFILGQQGVILRY 333
>sp|Q31P11|YC48L_SYNE7 Ycf48-like protein OS=Synechococcus elongatus (strain PCC 7942)
GN=Synpcc7942_1178 PE=3 SV=1
Length = 349
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 145/299 (48%), Gaps = 89/299 (29%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LDIAF + HG+L+GT L ET DGG++W+ R++ + D YR NSISFKG E
Sbjct: 52 TILDIAFTSNK-QHGWLVGTDLALYETLDGGQSWSERAL----DLDETYRLNSISFKGDE 106
Query: 176 GWIVGKP-------------------------------------------AILLHTSDAG 192
GW+VG+P A + + D G
Sbjct: 107 GWVVGQPSLMLHTTDGGKNWLRIPLSEKLPGSPLLVTALGKGEAEMATDVAAIYRSRDGG 166
Query: 193 ESWE-RIP--------------------------LSSQLPGDMAFWQPHNRAVARRIQNM 225
+SW+ ++P S+ PGD W PH R +RR+Q M
Sbjct: 167 KSWQAQVPDAAGVARSVSRSRDGRYLAVSARGNFYSTWKPGDTT-WTPHQRTSSRRLQLM 225
Query: 226 GWRADGGLWLLVRGGGLFLSKGTGITEEFEEV------------PVQSRGFGILDVGYRS 273
G+ D WL+ RGG L SK + I + +EE+ P ++ G+G LD+ YRS
Sbjct: 226 GFGPDDRTWLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRS 284
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+ E W +GGSG LL + +GG+ W R++ + +NLY++KF K+GFVLG G+LL+Y
Sbjct: 285 KQEIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLRY 343
>sp|Q5N557|YC48L_SYNP6 Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27144 / PCC
6301 / SAUG 1402/1) GN=syc0372_d PE=3 SV=1
Length = 349
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 144/299 (48%), Gaps = 89/299 (29%)
Query: 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175
+LDIAF + HG+L+GT L ET DG ++W+ R++ + D YR NSISFKG E
Sbjct: 52 TILDIAFTSNK-QHGWLVGTDLALYETLDGEQSWSERAL----DLDETYRLNSISFKGDE 106
Query: 176 GWIVGKP-------------------------------------------AILLHTSDAG 192
GW+VG+P A + + D G
Sbjct: 107 GWVVGQPSLMLHTTDGGKNWLRIPLSEKLPGSPLLVTALGKGEAEMATDVAAIYRSRDGG 166
Query: 193 ESWE-RIP--------------------------LSSQLPGDMAFWQPHNRAVARRIQNM 225
+SW+ ++P S+ PGD W PH R +RR+Q M
Sbjct: 167 KSWQAQVPDAAGVARSVSRSRDGRYLAVSARGNFYSTWKPGDTT-WTPHQRTSSRRLQLM 225
Query: 226 GWRADGGLWLLVRGGGLFLSKGTGITEEFEEV------------PVQSRGFGILDVGYRS 273
G+ D WL+ RGG L SK + I + +EE+ P ++ G+G LD+ YRS
Sbjct: 226 GFGPDDRTWLIARGGRLQFSKTSQI-DNWEEMLEESDAWGTAIEPERNAGWGFLDLAYRS 284
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
+ E W +GGSG LL + +GG+ W R++ + +NLY++KF K+GFVLG G+LL+Y
Sbjct: 285 KQEIWLSGGSGTLLVSEDGGEHWQRDRVIAKLPSNLYTIKFFAPKQGFVLGQRGLLLRY 343
>sp|Q2JW20|YC48L_SYNJA Ycf48-like protein OS=Synechococcus sp. (strain JA-3-3Ab)
GN=CYA_0848 PE=3 SV=2
Length = 334
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 144/323 (44%), Gaps = 75/323 (23%)
Query: 82 ISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLE 141
+ LAA + L + + W++V +P +LLDIAF + +HG+L+G + TLLE
Sbjct: 11 VLLAAFSLLLMAARMPDMKVVPWQQVEVPTQN--ILLDIAFTGTNPSHGWLVGDKATLLE 68
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLS 201
++DGG W R + + E E + +SISF G EGW+VG+P ILLHT + G W I LS
Sbjct: 69 SQDGGLHWQVRKLTALEPEAY---LSSISFAGAEGWVVGQPRILLHTLNEGSDWTSIRLS 125
Query: 202 SQLPGDMAFWQPHNRAVARRIQNMG-----------W---------------RADGGLWL 235
QLPG+ Q A + N+G W R GG +L
Sbjct: 126 KQLPGEPILIQALGPGAAEMVTNVGAIYRTEDGGQTWHAQVEEPIGAIKNIARGPGGEYL 185
Query: 236 LVRGGGLFLSKGTGITEEFEEVP------VQSRGF------------------------- 264
V G F T + ++ P +Q+ GF
Sbjct: 186 AVSSRGSFYFLYTPESRSWKPYPRESSRRIQNMGFGPNGSAWKLNQGAEIAFTSDFTSGE 245
Query: 265 -------------GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYS 311
G L+ Y++ + W GG G L+ + +GGKTW K NI AN YS
Sbjct: 246 WSKPLRPGRALSFGYLNAAYQNDHDLWVVGGGGTLIHSPDGGKTWEEAKKLSNIPANFYS 305
Query: 312 VKFINEKKGFVLGNDGVLLQYLG 334
++F +GF+LG G LL+Y+G
Sbjct: 306 IEFFGPDRGFILGQRGTLLRYVG 328
>sp|Q7V301|YC48L_PROMP Ycf48-like protein OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=PMM0296 PE=3 SV=1
Length = 337
Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 154/343 (44%), Gaps = 84/343 (24%)
Query: 69 RQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLN 128
++FV+ L L+ +L S WE + LDI F+ D N
Sbjct: 2 KKFVTSIPNLLLTFTLCFVLSSCSSTGVKMSESSPWETIQFEDQSNA--LDIDFI--DNN 57
Query: 129 HGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH- 187
HGFL+G+ + ++E+ DGGK+W RS+ A EE N+R I FKG EGW++G+P++++H
Sbjct: 58 HGFLVGSNRLIMESNDGGKSWEKRSLDIAAEE--NFRLLDIDFKGSEGWLIGQPSLVMHT 115
Query: 188 -----------------------------------------TSDAGESWE---------- 196
TS++GE+WE
Sbjct: 116 IDEGKNWTRLSLGKLPGQPFLVSTVDDGVAELATTSAAIYTTSNSGETWEAKVSDPSEQG 175
Query: 197 ------------RIPLSS------QLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR 238
+ +SS L W H RA ++R+Q +G+ DG LW+L R
Sbjct: 176 GIRDLRRTSNGDYVSVSSLGNFFSTLESGSDTWIAHQRASSKRVQGIGFNPDGNLWMLSR 235
Query: 239 GGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296
G + + + E + + VP+ + G+ LD+G+ + WA GG+G L+ + + GKTW
Sbjct: 236 GAEIRFNDDSNDLESWTKPIVPILN-GYNYLDMGWDPEGNIWAGGGNGTLIVSKDDGKTW 294
Query: 297 IREKAADNIAANLYSVKF-----INEKKGFVLGNDGVLLQYLG 334
+ A N+ N ++F ++ KKGF+LG G +L++ G
Sbjct: 295 DSDPVASNLPTNFIKIQFLEKDELDAKKGFILGERGYILRWNG 337
>sp|Q2JJR3|YC48L_SYNJB Ycf48-like protein OS=Synechococcus sp. (strain JA-2-3B'a(2-13))
GN=CYB_2153 PE=3 SV=1
Length = 333
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 133/300 (44%), Gaps = 75/300 (25%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W++V +P +LLDIAF +HG+L+G + TLLE++DGG W R +P E E +
Sbjct: 34 WQQVEVPTQ--NILLDIAFTGTTPSHGWLVGDKATLLESRDGGLHWQVRELPGLEPEAY- 90
Query: 164 YRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQ 223
SISF G EGW+ G+P ILLHT + G W I L++QLPG+ Q A +
Sbjct: 91 --LASISFAGAEGWVAGQPKILLHTLNEGSDWTSIRLNNQLPGEPLLIQALGPGAAEMVT 148
Query: 224 NMG-----------W---------------RADGGLWLLVRGGGLFLSKGTGITEEFEEV 257
N+G W R G +L V G F T + ++
Sbjct: 149 NVGAIYRTEDGGQTWHAQVDEPIGAIKNIARGPEGEYLAVSSRGSFYFLYTPESRTWKPY 208
Query: 258 P------VQSRGFG---------------------------------ILDVGY-----RS 273
P +Q+ GFG L GY ++
Sbjct: 209 PRESSRRIQNMGFGPHGSAWKLNQGAEIAFTDDFTSGQWSSPLRPGRALSFGYLNAAYQN 268
Query: 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333
+ W GG L+ + +GGKTW + K NI AN YS++F ++GF+LG G LL+Y+
Sbjct: 269 DHDLWVVGGGATLIHSPDGGKTWEQAKKLSNIPANFYSIEFFGPEQGFILGQRGTLLRYV 328
>sp|P73069|YC48L_SYNY3 Ycf48-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr2034 PE=3 SV=1
Length = 342
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 32/233 (13%)
Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
N G++ G LL T DGG+TWA IP +E+ ++ I+ + ++ +
Sbjct: 104 NEGWITGKPSILLHTTDGGQTWA--RIPLSEKLP-GAPYSIIALGPQTAEMITDLGAIYK 160
Query: 188 TSDAGESWERIP---------------------------LSSQLPGDMAFWQPHNRAVAR 220
T++ G++W+ + S+ PG W PHNR +R
Sbjct: 161 TTNGGKNWKALVEGAVGVARTIQRSTDGRYVAVSARGNFYSTWAPGQTE-WTPHNRNSSR 219
Query: 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRG-FGILDVGYRSQDEAWA 279
R+Q MG+ DG LWLL RGG L S E + + Q +G +G+LD+ +R+ +E W
Sbjct: 220 RLQTMGYGKDGQLWLLARGGQLQFSTDPDAEEWSDVIAPQDKGSWGLLDLSFRTPEEVWV 279
Query: 280 AGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332
AG SG LL + +GG+TW ++ ++I ANLY V F++ +KGFVLG DG+LL+Y
Sbjct: 280 AGASGNLLMSQDGGQTWAKDTGVEDIPANLYRVVFLSPEKGFVLGQDGILLKY 332
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 72/107 (67%), Gaps = 6/107 (5%)
Query: 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
A + W+ + + D DIAF +D NHG+L+GT++T+ ET DGG TW + I EE
Sbjct: 36 AFNPWQEIALETDS--TFADIAFT-EDPNHGWLVGTKETIFETTDGGDTWEQKLIDLGEE 92
Query: 160 EDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG 206
+ F+++SF G EGWI GKP+ILLHT+D G++W RIPLS +LPG
Sbjct: 93 K---ASFSAVSFSGNEGWITGKPSILLHTTDGGQTWARIPLSEKLPG 136
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 273 SQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
S +E W G +LL TT+GG+TW R ++ + YS+ + + ++ + G + +
Sbjct: 102 SGNEGWITGKPSILLHTTDGGQTWARIPLSEKLPGAPYSIIALGPQTAEMITDLGAIYK 160
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 104 WERVYIPVDPGVV-LLDIAF-VPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEED 161
W V P D G LLD++F P+++ ++ G LL ++DGG+TWA + ED
Sbjct: 252 WSDVIAPQDKGSWGLLDLSFRTPEEV---WVAGASGNLLMSQDGGQTWAKDT----GVED 304
Query: 162 FNYRFNSISFKGKE-GWIVGKPAILLHTSDAGE 193
+ F E G+++G+ ILL + + E
Sbjct: 305 IPANLYRVVFLSPEKGFVLGQDGILLKYNPSTE 337
>sp|A5GQF5|YC48L_SYNR3 Ycf48-like protein OS=Synechococcus sp. (strain RCC307)
GN=SynRCC307_0211 PE=3 SV=1
Length = 331
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 155/342 (45%), Gaps = 92/342 (26%)
Query: 69 RQFVSQTATLSLSISL--AATTGLYEQPAKSEEALSAW--ERVYIPVDPGVVLLDIAFVP 124
R F+S + L+ L TT L A S W +++ I +P LD+AF
Sbjct: 6 RSFLSLLLCVGLTFGLGGCVTTSL------PMAAASPWNSQKLGIESNP----LDVAFTN 55
Query: 125 DDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI 184
+ +HGFL+G+ + ++ET DGG+TW R I +E N+R SI F G EGWI G+P +
Sbjct: 56 E--SHGFLVGSNRLVMETSDGGETWEEREIDLPADE--NFRLISIDFNGDEGWIAGQPGL 111
Query: 185 LLH-------------------------------------------TSDAGESWE----- 196
LLH +SDAG+SW+
Sbjct: 112 LLHSDDAGQSWSRLLLDTKLPGDPYLITALGSKKAELATNVGAIYQSSDAGKSWQAEVVD 171
Query: 197 --------------RIPLSSQL--------PGDMAFWQPHNRAVARRIQNMGWRADGGLW 234
R S L PG + WQ H R ++R+Q+MG++ DG +W
Sbjct: 172 AAGSVRDLRRGDDGRYVSVSSLGNFFSTWDPG-QSNWQVHQRVSSQRLQSMGYQPDGQMW 230
Query: 235 LLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNG 292
++ RG L + G EE+ + +P+ + G+G LD+ + Q WA GG+G LL +++G
Sbjct: 231 MVTRGAQLRFNPEGGDYEEWSKPVIPI-TNGYGYLDMAWDPQGNIWAGGGNGTLLVSSDG 289
Query: 293 GKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
GK W ++ +N F+ K F LG G +L+++G
Sbjct: 290 GKEWEKDPVGTATPSNFTRFVFLGGNKAFALGERGAILRWVG 331
>sp|Q31CN6|YC48L_PROM9 Ycf48-like protein OS=Prochlorococcus marinus (strain MIT 9312)
GN=PMT9312_0298 PE=3 SV=1
Length = 338
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 83/293 (28%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+ F+ D N+GFL+G+ + ++E+ DGG+TW R++ EE N+R I FKG+EGW
Sbjct: 49 LDVDFI--DNNNGFLVGSNRLIMESNDGGETWEKRNLDLPSEE--NFRLIDIDFKGQEGW 104
Query: 178 IVGKPAILLHT-------------------------------------------SDAGES 194
++G+P++++HT SD+GES
Sbjct: 105 LIGQPSLVMHTLDAGKNWTRLSLGNKLPGQPYLITTVDDGVAELATTAGAIYQTSDSGES 164
Query: 195 WERIPLS----------------------------SQLPGDMAFWQPHNRAVARRIQNMG 226
W L S L D W H RA ++R+Q++G
Sbjct: 165 WNAKVLDASGSGGVRDLRRTDKGDYVSVSSLGNFFSTLENDSNSWIAHQRASSKRVQSIG 224
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSG 284
+ +G LW+L RG + ++ T E + + +P+ + G+ LD+G+ + WA GG+G
Sbjct: 225 FNPEGSLWMLSRGAEIRFNEDTNDLENWSKPIIPILN-GYNYLDMGWDPNGDIWAGGGNG 283
Query: 285 VLLKTTNGGKTWIREKAADNIAANLYSVKFINE-----KKGFVLGNDGVLLQY 332
L+ + + GKTW + A + N + F+++ +KGFVLG G +L++
Sbjct: 284 TLIVSKDQGKTWNKYPIAAELPTNYIKIVFLDKEALDNQKGFVLGERGYILKW 336
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 101 LSAWERVYIPVDPGVVLLDIAFVPD-DLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159
L W + IP+ G LD+ + P+ D+ G G TL+ +KD GKTW P A E
Sbjct: 249 LENWSKPIIPILNGYNYLDMGWDPNGDIWAG---GGNGTLIVSKDQGKTW--NKYPIAAE 303
Query: 160 EDFNY----RFNSISFKGKEGWIVGKPAILLH 187
NY + + ++G+++G+ +L
Sbjct: 304 LPTNYIKIVFLDKEALDNQKGFVLGERGYILK 335
>sp|Q9AW48|P2SAF_GUITH Photosystem II stability/assembly factor HCF136, chloroplastic
OS=Guillardia theta GN=hcf136 PE=3 SV=1
Length = 395
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 12/156 (7%)
Query: 53 SSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVD 112
S++ + S+ +NR +F++ +L T LY P + ++W +V +PVD
Sbjct: 29 SNNKFENHSNFFKINRTKFINYLLYPTL-------TSLY--PKFTHANTTSWTKVDLPVD 79
Query: 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAE-EEDFNYRFNSISF 171
VL DI F + HG+L+G++ T LET DGG TW PR+ + + +E+ YRF +ISF
Sbjct: 80 S--VLFDIEFTDPECKHGWLVGSKGTFLETDDGGNTWVPRTFANLDPDEELTYRFENISF 137
Query: 172 KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGD 207
+G+EGW++GKPAI+L+T D G++W R+P+S +LPG+
Sbjct: 138 EGQEGWVIGKPAIILYTKDGGKTWFRVPVSPKLPGE 173
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 8/131 (6%)
Query: 210 FWQPHNRAVARRIQNMGWRADG---GLWLLVRGGGLFLSKGTGITE-----EFEEVPVQS 261
FW P R +RRIQ+MG+ + G+W+ RGGGL +S E FE + +++
Sbjct: 264 FWIPRARETSRRIQSMGFIQNDNQKGIWMSTRGGGLSVSTKNFDFESISSFNFENIDIKT 323
Query: 262 RGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGF 321
G+GILD + + + W G G++ +T+ GK W + D ++ NLY +KF+N KGF
Sbjct: 324 GGYGILDAAFVNDKDIWIICGGGIVYNSTDKGKNWTKVDGIDKLSGNLYKIKFVNNNKGF 383
Query: 322 VLGNDGVLLQY 332
+LG++G+LL+Y
Sbjct: 384 ILGSNGLLLRY 394
>sp|Q7VDP1|YC48L_PROMA Ycf48-like protein OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=Pro_0327 PE=3 SV=1
Length = 339
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 146/331 (44%), Gaps = 86/331 (25%)
Query: 80 LSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTL 139
L + L+ P +S S WE + + D LDIAFV D NHGFL+G + +
Sbjct: 17 LGLGLSGCVTTTRIPVQSS---SPWEEIELANDDNP--LDIAFVDD--NHGFLVGANRLI 69
Query: 140 LETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAI--------------- 184
LET DGG TW R + EE N+R SI FK EGWIVG+P +
Sbjct: 70 LETTDGGSTWEERDLDIPAEE--NFRLMSIDFKEDEGWIVGQPNLVLHSEDAGKNWTRLS 127
Query: 185 ----------------------------LLHTSDAGESWE-RIPLSSQLPGDM------- 208
+ T+D G++WE R+ +S D+
Sbjct: 128 LGSQLPGNPYLITTLDTSSAELATTAGAVYRTTDGGKNWEGRVAEASGGVRDLRRKEDGT 187
Query: 209 ------------------AFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 250
WQ H RA ++R+Q +G++ DG LW+L RG + L+ +G
Sbjct: 188 YVSVSSLGNFFVTLDKTDQAWQSHQRASSKRVQTLGFKPDGQLWMLSRGAEIRLNDASGD 247
Query: 251 TEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAAN 308
E + + +P+ + G+ +D+ + + WA GG+G LL + + G +W ++ N
Sbjct: 248 YESWSKPIIPLVN-GYNYMDMAWDPEGNIWAGGGNGTLLVSKDDGNSWEKDPIGYATPTN 306
Query: 309 LYSVKFI-----NEKKGFVLGNDGVLLQYLG 334
+ F+ N KGFVLG G +L+++G
Sbjct: 307 FIRIFFLKNPNGNPPKGFVLGERGHVLRWVG 337
>sp|Q46M02|YC48L_PROMT Ycf48-like protein OS=Prochlorococcus marinus (strain NATL2A)
GN=PMN2A_1662 PE=3 SV=1
Length = 338
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 133/295 (45%), Gaps = 83/295 (28%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+ FV D +GFL+GT + +LET DGG TW R++ E N+R S+ FKG+EGW
Sbjct: 49 LDVDFVDD--KNGFLVGTNRLILETNDGGITWKERNLDIPSEG--NFRLISVDFKGQEGW 104
Query: 178 IVGKPAILLHTS-------------------------------------------DAGES 194
I G+P ++LHT+ DAG +
Sbjct: 105 IAGQPGLILHTTDGGKNWTRLDLGNKLPGDPYLITTIDTDIAELATTAGAIYKTTDAGTN 164
Query: 195 WERIPLSSQLPGDM----------------------------AFWQPHNRAVARRIQNMG 226
WE I + + G + W PH RA ++R+Q++G
Sbjct: 165 WEAIVVDTSGSGGIRELRRTNNGGYISVSSLGNFFSVLRPGEEIWSPHQRASSKRVQSVG 224
Query: 227 WRADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSG 284
+ +G LW+L RG + + + + + +P+ + G+ D+ + WAAGG+G
Sbjct: 225 EQPNGDLWMLSRGAEIRFNADPDDIDSWSKPIIPIVN-GYNYQDLVWDPSKSIWAAGGNG 283
Query: 285 VLLKTTNGGKTWIREKAADNIAANLYSVKFINE-----KKGFVLGNDGVLLQYLG 334
LL + + GKTW ++ +++ N + F+++ KGFV G G LL++ G
Sbjct: 284 TLLVSNDEGKTWEKDPVGESVPTNFIRILFLDDLNSESPKGFVFGERGNLLRWQG 338
>sp|Q3MC08|YC48L_ANAVT Ycf48-like protein OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=Ava_1856 PE=3 SV=1
Length = 339
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 85/129 (65%), Gaps = 3/129 (2%)
Query: 205 PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFE-EVPVQSRG 263
PG A W PHNR +RR++NMG+ DG LWLL RGG + S T E + + P +
Sbjct: 199 PGQNA-WVPHNRNSSRRVENMGFSQDG-LWLLARGGQVQFSDPTKPDEWLDAQTPELATS 256
Query: 264 FGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL 323
+G+LD+ YR+ +E W GGSG LL +T+GGKTW +++ + +AAN Y V F+ +GFV+
Sbjct: 257 WGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVI 316
Query: 324 GNDGVLLQY 332
G+ GVLL+Y
Sbjct: 317 GDRGVLLKY 325
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 88/149 (59%), Gaps = 9/149 (6%)
Query: 78 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+L + L G + P+ S + W V +P + LLDIAF ++ HGFL+G+
Sbjct: 11 FALLVVLLLCIGCSKVPSTS---YNPWAVVSLPTE--AKLLDIAFT-ENPQHGFLVGSNA 64
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
TLLET DGG W P ++ +D YRF+S+SF GKEGWI G+P++LLHT+D G SW R
Sbjct: 65 TLLETNDGGNNWQPLNLAL---DDDRYRFDSVSFAGKEGWIAGEPSLLLHTTDEGRSWSR 121
Query: 198 IPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
IPLS +LPG+ Q +A ++G
Sbjct: 122 IPLSEKLPGNPIAIQALGTDIAEMATDVG 150
>sp|Q8YQI3|YC48L_NOSS1 Ycf48-like protein OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=alr3844 PE=3 SV=1
Length = 339
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 106/200 (53%), Gaps = 32/200 (16%)
Query: 139 LLETKDGGKTW-----APRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGE 193
+ +T DGGK W A + E + ++ ++S KG T +AG+
Sbjct: 152 IYKTTDGGKNWKAQVEAAVGVVRNLERSVDGKYVAVSAKGS----------FYSTWEAGQ 201
Query: 194 SWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEE 253
+ W PHNR +RR++NMG+ DG LWLL RGG + S E
Sbjct: 202 N---------------AWVPHNRNSSRRVENMGFSQDG-LWLLARGGQVQFSDPANPDEW 245
Query: 254 FE-EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSV 312
+ E P + +G+LD+ YR+ +E W GGSG LL +T+GGKTW +++ + +AAN Y V
Sbjct: 246 LDAETPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKV 305
Query: 313 KFINEKKGFVLGNDGVLLQY 332
F+ +GFV+G+ GVLL+Y
Sbjct: 306 VFLKPDQGFVIGDRGVLLKY 325
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 89/149 (59%), Gaps = 9/149 (6%)
Query: 78 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ 137
+L + L G + P+ S + W V +P + LLDIAF ++ HGFL+G+
Sbjct: 11 FTLLVVLLLCIGCSKVPSTS---YNPWAVVSLPTE--AKLLDIAFT-ENPQHGFLVGSSA 64
Query: 138 TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWER 197
TLLET DGG W P ++ +D YRF+S+SF GKEGWIVG+P++LLHT+D G SW R
Sbjct: 65 TLLETNDGGNNWQPLNLAL---DDDRYRFDSVSFAGKEGWIVGEPSLLLHTTDEGRSWSR 121
Query: 198 IPLSSQLPGDMAFWQPHNRAVARRIQNMG 226
IPLS +LPG+ Q +A ++G
Sbjct: 122 IPLSEKLPGNPIAIQALGTDIAEMATDVG 150
>sp|Q7V4Q3|YC48L_PROMM Ycf48-like protein OS=Prochlorococcus marinus (strain MIT 9313)
GN=PMT_1895 PE=3 SV=1
Length = 335
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 137/291 (47%), Gaps = 78/291 (26%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LDI+F D NHGF++GT + ++E+ DGG +W RS+ EED N+R SI F G EGW
Sbjct: 49 LDISF--SDANHGFVVGTNRLIMESNDGGVSWKKRSLDL--EEDENFRLISIDFNGNEGW 104
Query: 178 IVGKPAILLHTSDAGESWERIPLSSQLPGD---MAFWQPHNRAVARRIQNMGWRADGGL- 233
I G+P +++H++DAG++W R+ L ++LPGD + P+N +A + +DGG
Sbjct: 105 IAGQPGLVMHSTDAGKNWSRLKLENKLPGDPYLITNLGPNNAELATNAGAIYRTSDGGTT 164
Query: 234 ----------------------WLLVRGGGLFLSK---GTGITEEFEEVP---VQSRGF- 264
++ V G F S G + + E V VQS G+
Sbjct: 165 WKATVSEAAGAVRDLRRSAAGNYVSVSSLGNFFSTLDLGQDVWQNHERVSSKRVQSLGYQ 224
Query: 265 --------------------GILDV----------GYRSQDEAW-------AAGGSGVLL 287
G +D GY D +W AAGG+G L+
Sbjct: 225 PNGELWMVARGAEIRLNDQPGNVDSWGKAMIPITNGYNYLDLSWDPNGGIWAAGGNGTLI 284
Query: 288 KTTNGGKTWIREKAADNIAANLYSVKFI----NEKKGFVLGNDGVLLQYLG 334
KT + GK+W + D +NL + F ++ KGFVLG G LL+++G
Sbjct: 285 KTLDDGKSWQIDPMGDTQPSNLIRILFDTSSESQAKGFVLGERGHLLRWVG 335
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 82 ISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHG-FLLGTRQTLL 140
++ A L +QP + +W + IP+ G LD+++ P N G + G TL+
Sbjct: 232 VARGAEIRLNDQPGN----VDSWGKAMIPITNGYNYLDLSWDP---NGGIWAAGGNGTLI 284
Query: 141 ETKDGGKTWAPRSIPSAEEEDF-NYRFNSISFKGKEGWIVGKPAILLH 187
+T D GK+W + + + F++ S +G+++G+ LL
Sbjct: 285 KTLDDGKSWQIDPMGDTQPSNLIRILFDTSSESQAKGFVLGERGHLLR 332
>sp|Q3B0C5|YC48L_SYNS9 Ycf48-like protein OS=Synechococcus sp. (strain CC9902)
GN=Syncc9902_0228 PE=3 SV=1
Length = 333
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 134/288 (46%), Gaps = 77/288 (26%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD++F D +HGFL+G+ + + ET DGG W RS+ +EE N+R SI F+G+EGW
Sbjct: 49 LDVSFT--DPSHGFLVGSNRMIRETDDGGAHWNDRSLDLPDEE--NFRLISIDFEGQEGW 104
Query: 178 IVGKPAILLH-------------------------------------------TSDAGES 194
I G+P +L+H T+D GES
Sbjct: 105 IAGQPGLLMHSTDGGQNWTRLFLDTKLPGEPYLITALGKSSAELATNVGAVYKTNDGGES 164
Query: 195 WERIPLS-------------------SQLPGDMAFWQP-------HNRAVARRIQNMGWR 228
WE S L A W+P H R ++R+Q++G++
Sbjct: 165 WEASVTDAAGAVRDLRRSSNGSYVSVSGLGNFYATWEPGETVWKVHQRVSSQRLQSIGYQ 224
Query: 229 ADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGVL 286
DG LW++ RG + L+ G G E++ + +P+ + G+G +D+ + WA GG+G L
Sbjct: 225 PDGNLWMVARGAQIRLNDGDGNVEDWSKAIIPI-TNGYGYMDMAWDDDGGIWAGGGNGTL 283
Query: 287 LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
L + +GG +W + D +N F ++ FVLG G LL+++G
Sbjct: 284 LVSHDGGDSWETDPVGDQQPSNFTRFVF-DDDHAFVLGERGNLLRWVG 330
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
W + IP+ G +D+A+ DD + G TLL + DGG +W + P +++ N
Sbjct: 250 WSKAIIPITNGYGYMDMAW--DDDGGIWAGGGNGTLLVSHDGGDSW--ETDPVGDQQPSN 305
Query: 164 YRFNSISFKGKEGWIVGKPAILL 186
F F +++G+ LL
Sbjct: 306 --FTRFVFDDDHAFVLGERGNLL 326
>sp|Q7U9P8|YC48L_SYNPX Ycf48-like protein OS=Synechococcus sp. (strain WH8102) GN=SYNW0205
PE=3 SV=1
Length = 333
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 79/289 (27%)
Query: 118 LDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGW 177
LD+AF D HG+L+G+ + + ET DGG TW RS+ EEE N+R SI F G EGW
Sbjct: 49 LDVAFT--DSRHGYLVGSNRMIRETNDGGATWNDRSLDLPEEE--NFRLISIDFNGDEGW 104
Query: 178 IV--------------------------GKPAIL-----------------LHTSDAGES 194
I G+P ++ T D G S
Sbjct: 105 IAGQPGLLMHTSDGGQNWTRLFLDTKLPGEPYLITALGSHSAEMATNVGAVYETHDDGGS 164
Query: 195 WERIP---------------------------LSSQLPGDMAFWQPHNRAVARRIQNMGW 227
WE + ++ PGD + WQ H R ++R+Q++G+
Sbjct: 165 WEALVTDAAGAVRDLRRGDDGSYVSVSSLGNFYATWQPGD-SVWQVHQRVSSQRLQSIGY 223
Query: 228 RADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSRGFGILDVGYRSQDEAWAAGGSGV 285
+ DG LW++ RG + L+ +G E + + +P+ + G+G +D+ + WA GG+G
Sbjct: 224 QPDGNLWMVARGAQIRLNDESGNLESWTKAIIPI-TNGYGYMDMAWDEDGAIWAGGGNGT 282
Query: 286 LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
LL + +G +W + D +N + F + FVLG G LL+++G
Sbjct: 283 LLVSRDGADSWEIDPVGDRQPSNFTRMVF-DWDHAFVLGERGNLLRWVG 330
>sp|Q7NMB1|YC48L_GLOVI Ycf48-like protein OS=Gloeobacter violaceus (strain PCC 7421)
GN=glr0855 PE=3 SV=1
Length = 323
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 129/287 (44%), Gaps = 77/287 (26%)
Query: 117 LLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEG 176
LLDIAFV D +G+ +G+R TLL T DGG++W ++P + D RF S+SF GK G
Sbjct: 42 LLDIAFVDD--KNGWAVGSRSTLLRTADGGESWT--AVPVKLDSD--SRFLSVSFDGKNG 95
Query: 177 WIVGKPAILLHTSDAGESWERIPLSSQLPG----------DMA----------------- 209
WI G+P LL T + G SW I L +LPG D A
Sbjct: 96 WIGGEPKRLLRTVNGGASWTSITLDQRLPGSPLKVYALGADTAEVVLNSGLVIKTVNGGK 155
Query: 210 FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE--EFEEVP---VQSRGF 264
WQ A A I++ ADG W++ GG +L G + +E +Q+ GF
Sbjct: 156 NWQVVTPASAGGIRSAERVADGSYWVVSTRGGSYLQWKPGDPQWTNYERTSSRRIQAMGF 215
Query: 265 ------------------------------------GILDVGYRSQDEA-WAAGGSGVLL 287
+LD Y + D+ WAAGG G L+
Sbjct: 216 SSGKAGWMINQGGEMQFTANQGETWTPGRSVILNGLSLLDADYTAADKKIWAAGGGGTLI 275
Query: 288 KTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
+ + G+ W E+ I +L +V+FI KGFVLG +GVLL+Y G
Sbjct: 276 VSADDGQNWKAEEVP-GIKGSLLNVEFIGN-KGFVLGQNGVLLKYRG 320
>sp|Q3AN55|YC48L_SYNSC Ycf48-like protein OS=Synechococcus sp. (strain CC9605)
GN=Syncc9605_0201 PE=3 SV=1
Length = 333
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 10/131 (7%)
Query: 77 TLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTR 136
L L ISL+ + A + S W+ + +D LD+AF D +HG+L+G+
Sbjct: 14 VLVLGISLSGCVTTHVPTATT----SPWQA--MDLDTQANPLDVAFT--DSSHGYLVGSN 65
Query: 137 QTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWE 196
+ + ET DGG W RS+ +EE N+R SI F G EGWI G+P +L+H+ D G++W
Sbjct: 66 RMIRETNDGGAHWNERSLDLPDEE--NFRLISIDFSGDEGWIAGQPGLLMHSDDGGQNWT 123
Query: 197 RIPLSSQLPGD 207
R+ L ++LPG+
Sbjct: 124 RLFLDTKLPGE 134
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 205 PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEE--VPVQSR 262
PGD + WQ H R ++R+Q++G++ DG LW++ RG + L+ G + + + +P+ +
Sbjct: 202 PGD-SVWQVHQRVSSQRLQSIGFQPDGNLWMVARGAQIRLNDEPGDFDSWSKAIIPI-TN 259
Query: 263 GFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFV 322
G+G +D+ + WA GG+G LL + +GG +W + D +N + F E FV
Sbjct: 260 GYGYMDLAWDDDGAIWAGGGNGTLLVSRDGGDSWENDPVGDRQPSNFTRMVFDGEHA-FV 318
Query: 323 LGNDGVLLQYL 333
LG G LL+++
Sbjct: 319 LGERGNLLRWV 329
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 82 ISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLE 141
++ A L ++P +W + IP+ G +D+A+ DD + G TLL
Sbjct: 232 VARGAQIRLNDEPGD----FDSWSKAIIPITNGYGYMDLAW--DDDGAIWAGGGNGTLLV 285
Query: 142 TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSD 190
++DGG +W + P + + N F + F G+ +++G+ LL D
Sbjct: 286 SRDGGDSW--ENDPVGDRQPSN--FTRMVFDGEHAFVLGERGNLLRWVD 330
>sp|P84561|P2SAF_POPEU Photosystem II stability/assembly factor HCF136, chloroplastic
(Fragment) OS=Populus euphratica PE=1 SV=1
Length = 26
Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/26 (100%), Positives = 26/26 (100%)
Query: 247 GTGITEEFEEVPVQSRGFGILDVGYR 272
GTGITEEFEEVPVQSRGFGILDVGYR
Sbjct: 1 GTGITEEFEEVPVQSRGFGILDVGYR 26
>sp|P85303|P2SAF_SPIOL Photosystem II stability/assembly factor HCF136, chloroplastic
(Fragment) OS=Spinacia oleracea GN=HCF136 PE=1 SV=1
Length = 20
Score = 38.9 bits (89), Expect = 0.053, Method: Composition-based stats.
Identities = 15/20 (75%), Positives = 19/20 (95%)
Query: 98 EEALSAWERVYIPVDPGVVL 117
E++LS WERVY+P+DPGVVL
Sbjct: 1 EDSLSDWERVYLPIDPGVVL 20
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,309,101
Number of Sequences: 539616
Number of extensions: 5676270
Number of successful extensions: 38600
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 28574
Number of HSP's gapped (non-prelim): 5268
length of query: 334
length of database: 191,569,459
effective HSP length: 118
effective length of query: 216
effective length of database: 127,894,771
effective search space: 27625270536
effective search space used: 27625270536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)