Query 036387
Match_columns 334
No_of_seqs 231 out of 1332
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 12:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14870 PSII_BNR: Photosynthe 100.0 3.1E-39 6.6E-44 298.9 28.4 258 61-333 14-302 (302)
2 PLN00033 photosystem II stabil 100.0 2.9E-38 6.3E-43 303.6 28.6 274 60-334 34-398 (398)
3 PRK13684 Ycf48-like protein; P 100.0 8.7E-33 1.9E-37 262.1 28.1 253 65-334 47-330 (334)
4 PF14870 PSII_BNR: Photosynthe 100.0 7.9E-30 1.7E-34 236.2 27.0 209 100-333 4-213 (302)
5 COG4447 Uncharacterized protei 100.0 1.6E-30 3.6E-35 230.4 13.6 243 80-334 54-331 (339)
6 PRK13684 Ycf48-like protein; P 100.0 5.9E-28 1.3E-32 229.0 25.1 214 92-331 25-239 (334)
7 COG4447 Uncharacterized protei 99.9 2.8E-22 6.1E-27 178.1 12.0 207 102-333 32-241 (339)
8 PLN00033 photosystem II stabil 99.8 7.7E-20 1.7E-24 176.2 20.1 175 141-333 69-265 (398)
9 PF13088 BNR_2: BNR repeat-lik 99.5 3.5E-12 7.5E-17 117.4 19.1 215 92-322 18-275 (275)
10 smart00602 VPS10 VPS10 domain. 99.4 2E-11 4.3E-16 124.8 24.0 214 92-333 10-250 (612)
11 smart00602 VPS10 VPS10 domain. 99.1 1.7E-08 3.6E-13 103.4 21.9 59 92-153 55-116 (612)
12 cd00260 Sialidase Sialidases o 98.9 2.9E-07 6.2E-12 87.9 22.0 220 93-327 49-337 (351)
13 PF13088 BNR_2: BNR repeat-lik 98.9 1.2E-07 2.6E-12 87.2 18.7 178 137-325 18-226 (275)
14 cd00260 Sialidase Sialidases o 98.1 3.3E-05 7.1E-10 73.7 12.9 155 139-301 50-240 (351)
15 KOG3511 Sortilin and related r 98.0 0.00016 3.5E-09 74.2 14.2 63 92-156 215-280 (720)
16 PF02012 BNR: BNR/Asp-box repe 97.4 0.00015 3.3E-09 33.9 1.9 12 186-197 1-12 (12)
17 PF02012 BNR: BNR/Asp-box repe 97.3 0.00025 5.3E-09 33.2 1.9 12 287-298 1-12 (12)
18 KOG3511 Sortilin and related r 97.2 0.0032 7E-08 64.8 11.5 80 116-201 194-279 (720)
19 PF14517 Tachylectin: Tachylec 97.1 0.0032 6.9E-08 56.2 8.9 155 166-333 36-204 (229)
20 PF13859 BNR_3: BNR repeat-lik 96.6 0.058 1.3E-06 50.8 14.0 150 141-300 34-213 (310)
21 PF14517 Tachylectin: Tachylec 96.5 0.025 5.4E-07 50.6 10.2 108 224-332 38-155 (229)
22 COG4257 Vgb Streptogramin lyas 95.6 1.8 4E-05 39.8 20.3 105 225-333 194-303 (353)
23 PHA02713 hypothetical protein; 94.6 6.2 0.00013 40.3 23.2 196 101-327 281-523 (557)
24 PHA02790 Kelch-like protein; P 94.5 5.8 0.00013 39.7 20.4 169 128-325 272-454 (480)
25 KOG0645 WD40 repeat protein [G 93.9 5.1 0.00011 36.8 20.3 216 80-330 72-306 (312)
26 COG3292 Predicted periplasmic 93.0 1.4 3.1E-05 44.3 11.7 146 115-286 165-312 (671)
27 KOG0645 WD40 repeat protein [G 93.0 7.3 0.00016 35.8 22.5 193 116-330 16-220 (312)
28 KOG0310 Conserved WD40 repeat- 91.6 15 0.00032 36.2 19.9 217 78-330 77-304 (487)
29 KOG3669 Uncharacterized conser 91.2 5.3 0.00011 40.3 13.1 96 82-190 194-302 (705)
30 KOG1538 Uncharacterized conser 91.1 21 0.00045 36.9 17.5 198 115-328 13-245 (1081)
31 PHA02790 Kelch-like protein; P 90.8 19 0.00041 36.0 18.6 151 101-282 296-454 (480)
32 KOG4441 Proteins containing BT 89.9 25 0.00055 36.1 21.0 192 103-325 312-530 (571)
33 KOG3669 Uncharacterized conser 89.0 11 0.00024 38.0 13.5 139 174-333 193-353 (705)
34 COG3292 Predicted periplasmic 88.3 5.6 0.00012 40.2 10.9 98 228-329 214-312 (671)
35 KOG0278 Serine/threonine kinas 88.2 5.9 0.00013 36.1 10.0 102 223-331 188-293 (334)
36 PF13859 BNR_3: BNR repeat-lik 87.4 2 4.4E-05 40.4 7.2 60 92-153 150-213 (310)
37 smart00706 TECPR Beta propelle 86.2 2.2 4.7E-05 26.1 4.5 34 295-334 2-35 (35)
38 PF08450 SGL: SMP-30/Gluconola 85.8 25 0.00054 31.3 22.3 188 119-333 4-211 (246)
39 PF08450 SGL: SMP-30/Gluconola 85.8 25 0.00055 31.2 24.7 205 92-325 22-245 (246)
40 PHA03098 kelch-like protein; P 85.5 43 0.00094 33.7 23.0 172 128-326 295-496 (534)
41 cd00200 WD40 WD40 domain, foun 84.8 24 0.00053 30.3 23.0 104 222-332 96-204 (289)
42 COG4946 Uncharacterized protei 83.6 48 0.001 33.0 14.4 70 225-301 133-223 (668)
43 PHA02713 hypothetical protein; 82.3 62 0.0014 33.1 19.0 152 146-325 281-471 (557)
44 PHA03098 kelch-like protein; P 80.3 68 0.0015 32.2 20.4 178 94-301 313-520 (534)
45 KOG0296 Angio-associated migra 80.2 39 0.00086 32.3 12.1 100 224-332 69-175 (399)
46 KOG1523 Actin-related protein 79.4 47 0.001 31.4 12.2 142 166-325 13-165 (361)
47 TIGR03547 muta_rot_YjhT mutatr 77.0 66 0.0014 30.2 24.4 76 99-181 38-126 (346)
48 TIGR03548 mutarot_permut cycli 76.0 68 0.0015 29.9 23.3 30 170-199 120-155 (323)
49 KOG1274 WD40 repeat protein [G 74.2 1.3E+02 0.0028 32.3 20.6 186 116-332 15-215 (933)
50 KOG2055 WD40 repeat protein [G 73.3 1E+02 0.0022 30.6 17.8 193 115-333 214-415 (514)
51 PF07995 GSDH: Glucose / Sorbo 72.5 53 0.0011 31.1 11.3 100 224-323 6-130 (331)
52 COG4257 Vgb Streptogramin lyas 70.2 40 0.00087 31.3 9.2 100 228-333 70-174 (353)
53 KOG0318 WD40 repeat stress pro 70.1 1.3E+02 0.0028 30.4 19.8 138 164-325 364-506 (603)
54 cd00200 WD40 WD40 domain, foun 69.6 71 0.0015 27.3 22.6 186 115-332 52-246 (289)
55 KOG4441 Proteins containing BT 69.1 1.4E+02 0.0031 30.6 16.4 137 168-325 327-483 (571)
56 KOG1446 Histone H3 (Lys4) meth 68.4 1.1E+02 0.0023 28.8 11.9 105 225-333 146-260 (311)
57 TIGR03547 muta_rot_YjhT mutatr 68.2 1.1E+02 0.0023 28.8 17.3 33 293-326 177-209 (346)
58 KOG0640 mRNA cleavage stimulat 66.7 33 0.00071 32.3 8.0 111 222-334 175-290 (430)
59 PF06977 SdiA-regulated: SdiA- 66.4 43 0.00092 30.5 8.8 72 115-187 171-246 (248)
60 PRK14131 N-acetylneuraminic ac 66.0 1.3E+02 0.0028 28.9 16.9 33 292-325 197-229 (376)
61 KOG0289 mRNA splicing factor [ 65.9 1.4E+02 0.0031 29.4 18.9 149 165-332 349-502 (506)
62 TIGR02604 Piru_Ver_Nterm putat 64.4 1.4E+02 0.0029 28.6 14.4 57 266-325 126-202 (367)
63 KOG2048 WD40 repeat protein [G 62.7 1E+02 0.0022 31.9 11.2 104 221-330 27-135 (691)
64 TIGR03300 assembly_YfgL outer 61.8 1.5E+02 0.0032 28.1 15.7 95 230-332 279-376 (377)
65 PF12768 Rax2: Cortical protei 61.8 1.4E+02 0.003 27.8 12.8 97 94-200 18-130 (281)
66 KOG0289 mRNA splicing factor [ 61.1 1.2E+02 0.0026 29.9 10.9 62 265-330 349-414 (506)
67 PRK14131 N-acetylneuraminic ac 60.9 1.6E+02 0.0034 28.2 12.5 53 274-326 84-148 (376)
68 KOG0301 Phospholipase A2-activ 60.1 2.2E+02 0.0048 29.7 15.0 100 224-332 184-285 (745)
69 PF03404 Mo-co_dimer: Mo-co ox 58.3 12 0.00027 30.5 3.4 18 139-156 46-63 (131)
70 KOG0272 U4/U6 small nuclear ri 56.7 32 0.00069 33.5 6.2 92 221-325 263-364 (459)
71 PF07995 GSDH: Glucose / Sorbo 55.6 1.8E+02 0.004 27.3 15.6 147 167-323 5-198 (331)
72 TIGR02604 Piru_Ver_Nterm putat 55.2 1.7E+02 0.0036 28.0 11.3 96 224-323 18-140 (367)
73 KOG0640 mRNA cleavage stimulat 54.3 1.6E+02 0.0036 27.8 10.2 117 115-248 173-290 (430)
74 PF00400 WD40: WD domain, G-be 54.2 40 0.00086 20.1 4.6 27 306-332 11-38 (39)
75 PF14339 DUF4394: Domain of un 53.5 1E+02 0.0022 27.9 8.7 70 264-333 27-101 (236)
76 KOG1332 Vesicle coat complex C 51.8 1.9E+02 0.0042 26.5 11.8 51 103-154 91-144 (299)
77 PTZ00334 trans-sialidase; Prov 51.3 39 0.00085 35.9 6.5 57 241-299 289-349 (780)
78 TIGR03548 mutarot_permut cycli 51.1 2.1E+02 0.0045 26.6 18.5 52 274-326 123-180 (323)
79 KOG0275 Conserved WD40 repeat- 50.8 2.3E+02 0.0049 27.0 11.2 50 274-332 414-464 (508)
80 KOG0771 Prolactin regulatory e 50.2 89 0.0019 30.3 8.1 108 221-331 188-307 (398)
81 cd02110 SO_family_Moco_dimer S 48.0 63 0.0014 30.5 6.9 17 139-155 241-257 (317)
82 PF12768 Rax2: Cortical protei 45.9 2.5E+02 0.0054 26.0 11.9 103 49-156 25-132 (281)
83 PRK11138 outer membrane biogen 45.6 2.8E+02 0.0061 26.5 16.5 95 230-332 294-391 (394)
84 KOG0647 mRNA export protein (c 44.9 2.2E+02 0.0048 26.8 9.5 83 98-185 184-275 (347)
85 KOG0266 WD40 repeat-containing 44.7 3.2E+02 0.007 27.0 12.4 105 221-332 205-315 (456)
86 PLN02153 epithiospecifier prot 44.4 2.7E+02 0.0059 26.0 24.6 52 274-326 193-260 (341)
87 KOG0291 WD40-repeat-containing 42.4 3.4E+02 0.0075 28.8 11.3 101 220-327 351-456 (893)
88 COG4692 Predicted neuraminidas 42.1 77 0.0017 29.9 6.1 58 92-153 178-242 (381)
89 PTZ00334 trans-sialidase; Prov 42.0 60 0.0013 34.5 6.2 59 92-153 288-350 (780)
90 PF13810 DUF4185: Domain of un 40.8 37 0.0008 32.1 4.1 17 92-108 129-145 (316)
91 KOG1036 Mitotic spindle checkp 40.1 3.2E+02 0.007 25.7 18.2 189 114-334 54-261 (323)
92 KOG1063 RNA polymerase II elon 39.6 3.2E+02 0.0069 28.7 10.5 103 227-332 324-433 (764)
93 PF13810 DUF4185: Domain of un 38.5 38 0.00082 32.0 3.8 43 283-325 128-182 (316)
94 KOG0301 Phospholipase A2-activ 38.3 5E+02 0.011 27.3 17.5 64 265-332 181-246 (745)
95 KOG1063 RNA polymerase II elon 38.0 1.6E+02 0.0035 30.7 8.2 95 93-193 341-438 (764)
96 KOG0318 WD40 repeat stress pro 37.1 4.7E+02 0.01 26.6 20.7 102 222-332 490-599 (603)
97 PLN03215 ascorbic acid mannose 37.0 1.2E+02 0.0027 29.3 7.0 51 277-333 175-225 (373)
98 PLN02153 epithiospecifier prot 37.0 3.6E+02 0.0077 25.2 22.9 53 274-326 251-323 (341)
99 PF03404 Mo-co_dimer: Mo-co ox 36.2 48 0.001 27.0 3.6 17 286-302 46-62 (131)
100 KOG1523 Actin-related protein 35.7 4E+02 0.0086 25.4 16.1 213 94-330 36-274 (361)
101 PF06977 SdiA-regulated: SdiA- 35.0 3.5E+02 0.0075 24.6 21.1 198 115-332 22-247 (248)
102 cd02113 bact_SoxC_Moco bacteri 34.8 42 0.0009 31.9 3.4 17 139-155 243-259 (326)
103 KOG0284 Polyadenylation factor 34.3 1.6E+02 0.0034 28.9 7.1 104 222-333 99-208 (464)
104 KOG0641 WD40 repeat protein [G 33.4 2.4E+02 0.0053 25.4 7.7 80 253-332 22-115 (350)
105 KOG2110 Uncharacterized conser 33.3 2.1E+02 0.0047 27.5 7.7 64 265-330 175-243 (391)
106 PF10647 Gmad1: Lipoprotein Lp 32.9 2.7E+02 0.0058 25.1 8.4 74 222-301 168-245 (253)
107 KOG1524 WD40 repeat-containing 32.9 2.5E+02 0.0054 28.7 8.4 53 263-329 227-280 (737)
108 KOG2111 Uncharacterized conser 32.6 4.4E+02 0.0095 25.0 12.7 108 221-332 183-319 (346)
109 KOG0275 Conserved WD40 repeat- 32.4 2.8E+02 0.006 26.5 8.2 71 113-187 391-463 (508)
110 cd02114 bact_SorA_Moco sulfite 32.4 44 0.00096 32.3 3.2 17 139-155 293-309 (367)
111 PF07494 Reg_prop: Two compone 32.0 82 0.0018 17.3 3.0 19 307-325 5-23 (24)
112 PLN02193 nitrile-specifier pro 31.5 5.3E+02 0.011 25.6 23.2 204 102-326 151-386 (470)
113 KOG0973 Histone transcription 31.3 7.4E+02 0.016 27.2 16.3 205 102-330 117-350 (942)
114 cd02847 Chitobiase_C_term Chit 30.8 81 0.0017 23.3 3.7 19 137-155 33-51 (78)
115 KOG1446 Histone H3 (Lys4) meth 30.2 2.2E+02 0.0047 26.8 7.1 62 268-330 145-212 (311)
116 cd02112 eukary_NR_Moco molybdo 28.9 60 0.0013 31.6 3.5 17 139-155 305-321 (386)
117 KOG2055 WD40 repeat protein [G 27.9 6.2E+02 0.014 25.3 15.5 191 115-327 258-456 (514)
118 PTZ00421 coronin; Provisional 27.4 6.5E+02 0.014 25.3 25.3 25 115-139 76-100 (493)
119 KOG2111 Uncharacterized conser 27.2 3E+02 0.0065 26.1 7.5 64 265-330 183-251 (346)
120 PF06739 SBBP: Beta-propeller 27.1 1.2E+02 0.0026 18.8 3.5 20 307-326 13-32 (38)
121 KOG0310 Conserved WD40 repeat- 26.0 1.4E+02 0.0031 29.6 5.4 67 265-332 70-137 (487)
122 cd02111 eukary_SO_Moco molybdo 25.5 2.1E+02 0.0046 27.6 6.6 17 139-155 281-297 (365)
123 KOG4714 Nucleoporin [Nuclear s 25.4 2.2E+02 0.0048 26.3 6.1 27 115-141 224-250 (319)
124 KOG2445 Nuclear pore complex c 25.3 5.9E+02 0.013 24.2 15.4 195 115-328 14-250 (361)
125 PF13570 PQQ_3: PQQ-like domai 24.7 1.3E+02 0.0028 18.4 3.4 22 311-333 16-37 (40)
126 KOG0271 Notchless-like WD40 re 24.6 6.7E+02 0.015 24.6 10.0 62 265-332 411-477 (480)
127 KOG1407 WD40 repeat protein [F 24.5 5.7E+02 0.012 23.7 10.4 100 225-330 112-213 (313)
128 KOG0286 G-protein beta subunit 23.4 6.3E+02 0.014 23.8 11.5 104 222-328 58-167 (343)
129 PTZ00420 coronin; Provisional 23.4 8.3E+02 0.018 25.2 25.9 25 115-139 75-99 (568)
130 KOG2445 Nuclear pore complex c 23.2 6.5E+02 0.014 23.9 12.2 111 222-333 16-142 (361)
131 PF06462 Hyd_WA: Propeller; I 23.0 98 0.0021 18.5 2.4 16 318-333 1-16 (32)
132 KOG0771 Prolactin regulatory e 22.9 3.7E+02 0.008 26.2 7.5 86 225-318 150-241 (398)
133 KOG1332 Vesicle coat complex C 22.8 6E+02 0.013 23.4 9.4 101 92-200 187-296 (299)
134 PLN00177 sulfite oxidase; Prov 22.8 81 0.0018 30.8 3.1 16 139-154 301-316 (393)
135 KOG1230 Protein containing rep 22.8 7.6E+02 0.017 24.5 12.8 156 150-325 55-250 (521)
136 COG4946 Uncharacterized protei 22.6 8.1E+02 0.018 24.8 21.1 20 134-153 203-222 (668)
137 KOG0639 Transducin-like enhanc 21.9 5.4E+02 0.012 26.2 8.4 128 184-325 556-693 (705)
138 PF11725 AvrE: Pathogenicity f 21.8 3.2E+02 0.0068 31.8 7.6 102 220-327 703-816 (1774)
139 KOG0296 Angio-associated migra 21.6 4.9E+02 0.011 25.2 7.9 63 265-331 66-132 (399)
140 PRK11028 6-phosphogluconolacto 21.6 6.3E+02 0.014 23.1 10.8 95 225-324 40-144 (330)
141 KOG1963 WD40 repeat protein [G 21.1 7.4E+02 0.016 26.6 9.7 91 223-323 209-309 (792)
142 cd02110 SO_family_Moco_dimer S 21.1 84 0.0018 29.7 2.8 28 81-109 229-256 (317)
143 COG4409 NanH Neuraminidase (si 20.7 1.8E+02 0.004 30.5 5.3 105 92-197 545-671 (728)
144 KOG2048 WD40 repeat protein [G 20.5 1E+03 0.022 25.0 19.6 193 115-330 111-314 (691)
145 KOG2106 Uncharacterized conser 20.4 9.2E+02 0.02 24.6 21.1 136 166-327 371-511 (626)
146 cd02114 bact_SorA_Moco sulfite 20.2 85 0.0018 30.4 2.7 28 81-109 281-308 (367)
No 1
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=100.00 E-value=3.1e-39 Score=298.93 Aligned_cols=258 Identities=36% Similarity=0.692 Sum_probs=177.0
Q ss_pred CCCcccccceeeeccccccceeEEEecCCCccceEEecCCCCCcEEcccCCCC--CeeeEEEEEecCCCCEEEEEEcCCe
Q 036387 61 SSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP--GVVLLDIAFVPDDLNHGFLLGTRQT 138 (334)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~a~g~~~~~g~~~~g~i~~S~DgG~tW~~~~~p~~~--~~~l~~I~~~p~d~~~~~avG~~g~ 138 (334)
..+..+.++.|++...++++ |.. +.|++|+|||+||+.+..+... ...+++|.|. .+.+|++|+.|.
T Consensus 14 ~t~~~l~dV~F~d~~~G~~V------G~~--g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~---~~~g~ivG~~g~ 82 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAV------GAY--GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD---GNEGWIVGEPGL 82 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEE------ETT--TEEEEESSTTSS-EE-----S-----EEEEEEEE---TTEEEEEEETTE
T ss_pred CCCCceEEEEEecCCEEEEE------ecC--CEEEEECCCCccccccccCCCccceeeEEEEEec---CCceEEEcCCce
Confidence 34557888898877777554 454 7899999999999998755432 3678899996 267999999999
Q ss_pred EEEEcCCCcCeEeCcCCCCcccCcceeEEEEEE-eCCeEEEEEcCCEEEEEcCCCCCeEEeecCCC--------CC----
Q 036387 139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPLSSQ--------LP---- 205 (334)
Q Consensus 139 i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~-~~~~~~~vG~~g~i~~S~DgG~TW~~~~~~~~--------l~---- 205 (334)
||+|+|+|+||+++.++...+. .+..|.+ .++.+++++..|.||+|+|+|+||+.+..... .+
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpg----s~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~ 158 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPG----SPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRY 158 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS-----EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-E
T ss_pred EEEecCCCCCcEEeecCCCCCC----CeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcE
Confidence 9999999999999876533221 2234443 46888899999999999999999999865421 01
Q ss_pred ------C--------CcccccccCccccceEeeeeEeecCCEEEEEcCCeEEEec--CCCcceeeEeccccCCCeeeEEE
Q 036387 206 ------G--------DMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK--GTGITEEFEEVPVQSRGFGILDV 269 (334)
Q Consensus 206 ------g--------~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i~~S~--D~G~tW~w~~~~~~~~~~~~~~v 269 (334)
| ...+|.+|++...++|++|+|.+++.+|+++..|.|++|. |.+.+|+....++...+++++++
T Consensus 159 vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~ 238 (302)
T PF14870_consen 159 VAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDL 238 (302)
T ss_dssp EEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEE
T ss_pred EEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEE
Confidence 1 1157889999889999999999999999999999999998 66776533224444556789999
Q ss_pred EeecCCeEEEEeCCCcEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeCCeeEEEEc
Q 036387 270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333 (334)
Q Consensus 270 ~~~~~~~~~~~G~~G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il~s~ 333 (334)
+|++++++|++|..|.||+|+|+|+||++.+..++.+.+|+.|.|.++++.|++|++|+|||+.
T Consensus 239 a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~~ 302 (302)
T PF14870_consen 239 AYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRYV 302 (302)
T ss_dssp EESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE-
T ss_pred EecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEeC
Confidence 9999999999999999999999999999998866778899999999999999999999999984
No 2
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=100.00 E-value=2.9e-38 Score=303.56 Aligned_cols=274 Identities=75% Similarity=1.258 Sum_probs=210.8
Q ss_pred CCCCcccccceeeeccccccceeEEEecCCCccceEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCCeE
Q 036387 60 SSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTL 139 (334)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~a~g~~~~~g~~~~g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g~i 139 (334)
........||.|+...++.+.......-. .+..-....|+|++|+++..|..++..|++|+|.|.|++++||+|+.|.|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~G~~W~q~~~p~~~~~~L~~V~F~~~d~~~GwAVG~~G~I 112 (398)
T PLN00033 34 LSSNSSENRRSFLRQTATAAAALLLLPLL-GPSAPADAAEQSSEWEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQTL 112 (398)
T ss_pred ccccccchhhhHHHhhhHhhhhhhhcccc-cccCCcccccCCCccEEeecCCCCCCceEEEEeccCCCCEEEEEcCCCEE
Confidence 44556778888876654432221111100 01223445699999999999988667999999976688999999999999
Q ss_pred EEEcCCCcCeEeCcCCCCcccCcceeEEEEEEeCCeEEEEEcCCEEEEEcCCCCCeEEeecCCCCCCCc-----------
Q 036387 140 LETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDM----------- 208 (334)
Q Consensus 140 ~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~~~~~~vG~~g~i~~S~DgG~TW~~~~~~~~l~g~~----------- 208 (334)
++|+|||+||++...|...+.+..+++.+|.|.++++|++|+.|.||+|+|+|+||+++..++.+++..
T Consensus 113 L~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~ 192 (398)
T PLN00033 113 LETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPAILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSA 192 (398)
T ss_pred EEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCceEEEEEcCCCCCceECccccCCCCCceEEEEECCCce
Confidence 999999999999766554344455688999998889999999999999999999999886532222110
Q ss_pred ----------------ccccc-----------------------------------------------------------
Q 036387 209 ----------------AFWQP----------------------------------------------------------- 213 (334)
Q Consensus 209 ----------------~~~~~----------------------------------------------------------- 213 (334)
.-|..
T Consensus 193 ~ivg~~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W 272 (398)
T PLN00033 193 EMVTDEGAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYW 272 (398)
T ss_pred EEEeccceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCccEEEecCCCCcce
Confidence 11221
Q ss_pred --cCccccceEeeeeEeecCCEEEEEcCCeEEEecCCCcce---eeEeccccCCCeeeEEEEeecCCeEEEEeCCCcEEE
Q 036387 214 --HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE---EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLK 288 (334)
Q Consensus 214 --~~~~~~~~i~~~~~~~~g~~~~~~~~g~i~~S~D~G~tW---~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~ 288 (334)
++......++.+.+.+++.+|+++..|.+++|.|+|++| +|+++..+...+.++++.|.+++.+|++|..|.+++
T Consensus 273 ~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~ 352 (398)
T PLN00033 273 QPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLR 352 (398)
T ss_pred EEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence 111112234455666788899999999999999999998 678877664445789999999999999999999999
Q ss_pred EcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeCCeeEEEEcC
Q 036387 289 TTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334 (334)
Q Consensus 289 S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il~s~~ 334 (334)
|.|+|+||++....++...+||+|.|.+++++|++|++|+|||++|
T Consensus 353 s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~~~ 398 (398)
T PLN00033 353 STDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRYLG 398 (398)
T ss_pred eCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEeCC
Confidence 9999999999985446678999999998999999999999999986
No 3
>PRK13684 Ycf48-like protein; Provisional
Probab=100.00 E-value=8.7e-33 Score=262.06 Aligned_cols=253 Identities=30% Similarity=0.626 Sum_probs=186.9
Q ss_pred ccccceeeeccccccceeEEEecCCCccceEEecCCCCCcEEcccCC-CCCeeeEEEEEecCCCCEEEEEEcCCeEEEEc
Q 036387 65 SLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPV-DPGVVLLDIAFVPDDLNHGFLLGTRQTLLETK 143 (334)
Q Consensus 65 ~~~~~~~~~~~~~~a~g~~~~~g~~~~g~i~~S~DgG~tW~~~~~p~-~~~~~l~~I~~~p~d~~~~~avG~~g~i~~S~ 143 (334)
.+..+.|.+...+ |++|+. +.|++|+|+|+||+++..+. .....+++|+|. ++.+|++|+.|.||+|+
T Consensus 47 ~l~~v~F~d~~~g------~avG~~--G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~---~~~~~~~G~~g~i~~S~ 115 (334)
T PRK13684 47 NLLDIAFTDPNHG------WLVGSN--RTLLETNDGGETWEERSLDLPEENFRLISISFK---GDEGWIVGQPSLLLHTT 115 (334)
T ss_pred ceEEEEEeCCCcE------EEEECC--CEEEEEcCCCCCceECccCCcccccceeeeEEc---CCcEEEeCCCceEEEEC
Confidence 3445666544444 566665 88999999999999986543 223568899985 35689999999999999
Q ss_pred CCCcCeEeCcCCCCcccCcceeEEEEEE-eCCeEEEEEcCCEEEEEcCCCCCeEEeecCCC--------CCCCc------
Q 036387 144 DGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPLSSQ--------LPGDM------ 208 (334)
Q Consensus 144 DgG~TW~~~~~p~~~~~~~~~~~~~I~~-~~~~~~~vG~~g~i~~S~DgG~TW~~~~~~~~--------l~g~~------ 208 (334)
|+|+||+++..+...+. +...+.. .++..++++..|.||||+|+|+||+++..+.. .++..
T Consensus 116 DgG~tW~~~~~~~~~~~----~~~~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~ 191 (334)
T PRK13684 116 DGGKNWTRIPLSEKLPG----SPYLITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS 191 (334)
T ss_pred CCCCCCeEccCCcCCCC----CceEEEEECCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeC
Confidence 99999999865422111 1223433 34678899999999999999999999875421 01100
Q ss_pred ------------ccccccCccccceEeeeeEeecCCEEEEEcCCeEEE-ecCCCcceeeEecccc--CCCeeeEEEEeec
Q 036387 209 ------------AFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL-SKGTGITEEFEEVPVQ--SRGFGILDVGYRS 273 (334)
Q Consensus 209 ------------~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i~~-S~D~G~tW~w~~~~~~--~~~~~~~~v~~~~ 273 (334)
.-|..++......+..+.+.+++.+|++++.|.+++ |+|+|.+| +.+..+ ...+.++++.+.+
T Consensus 192 ~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW--~~~~~~~~~~~~~l~~v~~~~ 269 (334)
T PRK13684 192 RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESW--SKPIIPEITNGYGYLDLAYRT 269 (334)
T ss_pred CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCcc--ccccCCccccccceeeEEEcC
Confidence 113333333334556667777888999998888877 69999986 443333 2235688888888
Q ss_pred CCeEEEEeCCCcEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeCCeeEEEEcC
Q 036387 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334 (334)
Q Consensus 274 ~~~~~~~G~~G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il~s~~ 334 (334)
++++|++|..|.+++|.|+|++|+.+......+..++.+.+.+++++|++|+.|+||+++|
T Consensus 270 ~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 270 PGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 8899999999999999999999999875324456899999999999999999999999986
No 4
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=99.97 E-value=7.9e-30 Score=236.23 Aligned_cols=209 Identities=37% Similarity=0.648 Sum_probs=144.9
Q ss_pred CCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEeCCeEEEE
Q 036387 100 ALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIV 179 (334)
Q Consensus 100 gG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~~~~~~v 179 (334)
.+++|+.+..|.+ ..+.+|+|. |++++||||+.|.||+|+|||+||++...+.. ++..++|+.|.|.++++|++
T Consensus 4 ~~~~W~~v~l~t~--~~l~dV~F~--d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~--~~~~~~l~~I~f~~~~g~iv 77 (302)
T PF14870_consen 4 SGNSWQQVSLPTD--KPLLDVAFV--DPNHGWAVGAYGTILKTTDGGKTWQPVSLDLD--NPFDYHLNSISFDGNEGWIV 77 (302)
T ss_dssp SS--EEEEE-S-S--S-EEEEEES--SSS-EEEEETTTEEEEESSTTSS-EE-----S-------EEEEEEEETTEEEEE
T ss_pred cCCCcEEeecCCC--CceEEEEEe--cCCEEEEEecCCEEEEECCCCccccccccCCC--ccceeeEEEEEecCCceEEE
Confidence 3689999998877 799999998 78999999999999999999999999875443 22357899999998899999
Q ss_pred EcCCEEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCCeEEEecCCCcceeeEeccc
Q 036387 180 GKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPV 259 (334)
Q Consensus 180 G~~g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i~~S~D~G~tW~w~~~~~ 259 (334)
|+++.||||+|+|+||+++..+..+|+.. + .+....++.+++++..|.||+|+|+|++| +.+..
T Consensus 78 G~~g~ll~T~DgG~tW~~v~l~~~lpgs~--~------------~i~~l~~~~~~l~~~~G~iy~T~DgG~tW--~~~~~ 141 (302)
T PF14870_consen 78 GEPGLLLHTTDGGKTWERVPLSSKLPGSP--F------------GITALGDGSAELAGDRGAIYRTTDGGKTW--QAVVS 141 (302)
T ss_dssp EETTEEEEESSTTSS-EE----TT-SS-E--E------------EEEEEETTEEEEEETT--EEEESSTTSSE--EEEE-
T ss_pred cCCceEEEecCCCCCcEEeecCCCCCCCe--e------------EEEEcCCCcEEEEcCCCcEEEeCCCCCCe--eEccc
Confidence 99999999999999999998765566542 1 12234566788889999999999999987 44433
Q ss_pred cCCCeeeEEEEeecCCeEEEEeCCCcEEEEcCCCcC-cEEcccCCCcccceeEEEEeeCCeEEEEeCCeeEEEEc
Q 036387 260 QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT-WIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333 (334)
Q Consensus 260 ~~~~~~~~~v~~~~~~~~~~~G~~G~i~~S~DgG~t-W~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il~s~ 333 (334)
+.. ..+.++...++++.++++..|.+|+|.|.|.+ |+.... ...+.+.+|.|.+++.+|+++..|.|..++
T Consensus 142 ~~~-gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~ 213 (302)
T PF14870_consen 142 ETS-GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSPDGNLWMLARGGQIQFSD 213 (302)
T ss_dssp S-----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEETTTEEEEEE
T ss_pred CCc-ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc--CccceehhceecCCCCEEEEeCCcEEEEcc
Confidence 322 25677776778899999999999999988865 999998 567899999999999999999999988875
No 5
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=230.38 Aligned_cols=243 Identities=29% Similarity=0.533 Sum_probs=193.3
Q ss_pred ceeEEEecCCCccceEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCCcc
Q 036387 80 LSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEE 159 (334)
Q Consensus 80 ~g~~~~~g~~~~g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~~~ 159 (334)
....|++|.. +.|+.|+|+|.+|++...+.. ...|+++.|.. ..+|++|+...|++|+|+|+||.++.+....+
T Consensus 54 g~~gwlVg~r--gtiletdd~g~tw~qal~~~g-r~~f~sv~f~~---~egw~vGe~sqll~T~DgGqsWARi~~~e~~e 127 (339)
T COG4447 54 GSHGWLVGGR--GTILETDDGGITWAQALDFLG-RHAFHSVSFLG---MEGWIVGEPSQLLHTTDGGQSWARIPLSEKLE 127 (339)
T ss_pred CcceEEEcCc--ceEEEecCCcccchhhhchhh-hhheeeeeeec---ccccccCCcceEEEecCCCcchhhchhhcCCC
Confidence 3445777765 889999999999999877764 37899999973 47999999999999999999999987543322
Q ss_pred cCcceeEEEEEEeC-CeEEEEEcCCEEEEEcCCCCCeEEeecCCC---CC-----------------CC--------ccc
Q 036387 160 EDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQ---LP-----------------GD--------MAF 210 (334)
Q Consensus 160 ~~~~~~~~~I~~~~-~~~~~vG~~g~i~~S~DgG~TW~~~~~~~~---l~-----------------g~--------~~~ 210 (334)
. ...+|.|.+ ++++++|+.|.||+|+|+|++|+.+..... .+ |. ...
T Consensus 128 g----~~~sI~f~d~q~g~m~gd~Gail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~rGs~f~T~~aGqt~ 203 (339)
T COG4447 128 G----FPDSITFLDDQRGEMLGDQGAILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGARGSFFSTWGAGQTV 203 (339)
T ss_pred C----CcceeEEecchhhhhhcccceEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecCcceEecCCCCccE
Confidence 1 345777765 999999999999999999999999754210 00 00 024
Q ss_pred ccccCccccceEeeeeEeecC--CEEEEEcCCeEEEecCCCcceeeEeccccC----CCeeeEEEEeecCCeEEEEeCCC
Q 036387 211 WQPHNRAVARRIQNMGWRADG--GLWLLVRGGGLFLSKGTGITEEFEEVPVQS----RGFGILDVGYRSQDEAWAAGGSG 284 (334)
Q Consensus 211 ~~~~~~~~~~~i~~~~~~~~g--~~~~~~~~g~i~~S~D~G~tW~w~~~~~~~----~~~~~~~v~~~~~~~~~~~G~~G 284 (334)
|.+|++...+++.+|++..++ .+++.+..|..+++.++|..| .+++.+. ...++.+.+++.++++|++|..|
T Consensus 204 ~~~~g~~s~~~letmg~adag~~g~la~g~qg~~f~~~~~gD~w--sd~~~~~~~g~~~~Gl~d~a~~a~~~v~v~G~gG 281 (339)
T COG4447 204 WLPHGRNSSRRLETMGLADAGSKGLLARGGQGDQFSWVCGGDEW--SDQGEPVNLGRRSWGLLDFAPRAPPEVWVSGIGG 281 (339)
T ss_pred EeccCCCccchhcccccccCCccceEEEccccceeecCCCcccc--cccccchhcccCCCccccccccCCCCeEEeccCc
Confidence 667888888889999987777 466677777889999999965 5554432 24678899999999999999999
Q ss_pred cEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeCCeeEEEEcC
Q 036387 285 VLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334 (334)
Q Consensus 285 ~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il~s~~ 334 (334)
.++.|+|+|++|.+........+++++|.|..++..+++|++|++++++|
T Consensus 282 nvl~StdgG~t~skd~g~~er~s~l~~V~~ts~~~~~l~Gq~Gvll~~n~ 331 (339)
T COG4447 282 NVLASTDGGTTWSKDGGVEERVSNLYSVVFTSPKAGFLCGQKGVLLKYNP 331 (339)
T ss_pred cEEEecCCCeeEeccCChhhhhhhhheEEeccCCceEEEcCCceEEEecC
Confidence 99999999999998765323346799999999999999999999999875
No 6
>PRK13684 Ycf48-like protein; Provisional
Probab=99.96 E-value=5.9e-28 Score=229.03 Aligned_cols=214 Identities=34% Similarity=0.604 Sum_probs=169.9
Q ss_pred cceEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEE
Q 036387 92 EQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF 171 (334)
Q Consensus 92 g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~ 171 (334)
....++.+.+.+|+++..|.. ..+++|+|. |++++||+|+.|.||+|+|+|+||+++..+.. +..+++.+|.|
T Consensus 25 ~~~~~~~~~~~~W~~~~~~~~--~~l~~v~F~--d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~---~~~~~l~~v~~ 97 (334)
T PRK13684 25 STTRVPMLSSSPWQVIDLPTE--ANLLDIAFT--DPNHGWLVGSNRTLLETNDGGETWEERSLDLP---EENFRLISISF 97 (334)
T ss_pred CCCCcccccCCCcEEEecCCC--CceEEEEEe--CCCcEEEEECCCEEEEEcCCCCCceECccCCc---ccccceeeeEE
Confidence 334478888999999987665 789999998 78999999999999999999999999764321 12246888988
Q ss_pred eCCeEEEEEcCCEEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCCeEEEecCCCcc
Q 036387 172 KGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGIT 251 (334)
Q Consensus 172 ~~~~~~~vG~~g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i~~S~D~G~t 251 (334)
.++++|++|+.+.||||+|+|+||+++..+..+++.. + .+....++.++++++.|.||+|.|+|+|
T Consensus 98 ~~~~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~-~-------------~i~~~~~~~~~~~g~~G~i~~S~DgG~t 163 (334)
T PRK13684 98 KGDEGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSP-Y-------------LITALGPGTAEMATNVGAIYRTTDGGKN 163 (334)
T ss_pred cCCcEEEeCCCceEEEECCCCCCCeEccCCcCCCCCc-e-------------EEEEECCCcceeeeccceEEEECCCCCC
Confidence 8778999999999999999999999987542233321 0 1112234557888999999999999998
Q ss_pred eeeEeccccCCCeeeEEEEeecCCeEEEEeCCCcEEEEc-CCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeCCeeEE
Q 036387 252 EEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTT-NGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330 (334)
Q Consensus 252 W~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~S~-DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il 330 (334)
| +.+..+... .++++.+.+++..+++|..|.+|++. |+|++|+.+.. +....++++.+.+++++|++|+.|.++
T Consensus 164 W--~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~--~~~~~l~~i~~~~~g~~~~vg~~G~~~ 238 (334)
T PRK13684 164 W--EALVEDAAG-VVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQR--NSSRRLQSMGFQPDGNLWMLARGGQIR 238 (334)
T ss_pred c--eeCcCCCcc-eEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeC--CCcccceeeeEcCCCCEEEEecCCEEE
Confidence 6 554443322 57888887788888899999999984 77799999977 456899999999899999999999987
Q ss_pred E
Q 036387 331 Q 331 (334)
Q Consensus 331 ~ 331 (334)
.
T Consensus 239 ~ 239 (334)
T PRK13684 239 F 239 (334)
T ss_pred E
Confidence 6
No 7
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=99.88 E-value=2.8e-22 Score=178.14 Aligned_cols=207 Identities=31% Similarity=0.471 Sum_probs=163.1
Q ss_pred CCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEeCCeEEEEEc
Q 036387 102 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGK 181 (334)
Q Consensus 102 ~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~~~~~~vG~ 181 (334)
+.|+.+..|.. ....+|+|.- +++++|++|..|+|+.|+|+|++|++...+.. .+.|.++.|...++|++|+
T Consensus 32 ~p~~~velp~~--s~~l~ia~~~-~g~~gwlVg~rgtiletdd~g~tw~qal~~~g-----r~~f~sv~f~~~egw~vGe 103 (339)
T COG4447 32 NPWTDVELPTL--SPTLDIAFTE-SGSHGWLVGGRGTILETDDGGITWAQALDFLG-----RHAFHSVSFLGMEGWIVGE 103 (339)
T ss_pred Ccceeeecccc--CcccceeEee-cCcceEEEcCcceEEEecCCcccchhhhchhh-----hhheeeeeeecccccccCC
Confidence 47999988877 6788899984 89999999999999999999999998876542 1368899998889999999
Q ss_pred CCEEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCCeEEEecCCCcceeeEeccccC
Q 036387 182 PAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQS 261 (334)
Q Consensus 182 ~g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i~~S~D~G~tW~w~~~~~~~ 261 (334)
+..|++|+|+|+||.+++...++++. |. ++.|..+..-++++..|.||+++|+|++| +.+....
T Consensus 104 ~sqll~T~DgGqsWARi~~~e~~eg~---~~-----------sI~f~d~q~g~m~gd~Gail~T~DgGk~W--k~l~e~~ 167 (339)
T COG4447 104 PSQLLHTTDGGQSWARIPLSEKLEGF---PD-----------SITFLDDQRGEMLGDQGAILKTTDGGKNW--KALVEKA 167 (339)
T ss_pred cceEEEecCCCcchhhchhhcCCCCC---cc-----------eeEEecchhhhhhcccceEEEecCCcccH--hHhcccc
Confidence 99999999999999999987666543 22 23445556678888889999999999987 4432111
Q ss_pred C-CeeeEEEEeecCCeEEEEeCCCcEEEEcCCCcCcEEcccCCCcccceeEEEEeeCC--eEEEEeCCeeEEEEc
Q 036387 262 R-GFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEK--KGFVLGNDGVLLQYL 333 (334)
Q Consensus 262 ~-~~~~~~v~~~~~~~~~~~G~~G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~--~~~a~G~~G~il~s~ 333 (334)
. ......+++..++..+++|..|.+|.|-+-|++|.....+ +...-+..|-+.+++ -+++.|..|..+++.
T Consensus 168 v~~~~~n~ia~s~dng~vaVg~rGs~f~T~~aGqt~~~~~g~-~s~~~letmg~adag~~g~la~g~qg~~f~~~ 241 (339)
T COG4447 168 VGLAVPNEIARSADNGYVAVGARGSFFSTWGAGQTVWLPHGR-NSSRRLETMGLADAGSKGLLARGGQGDQFSWV 241 (339)
T ss_pred cchhhhhhhhhhccCCeEEEecCcceEecCCCCccEEeccCC-CccchhcccccccCCccceEEEccccceeecC
Confidence 1 1234456666688889999999999999999998888764 345667788887777 467888888877653
No 8
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=99.85 E-value=7.7e-20 Score=176.18 Aligned_cols=175 Identities=16% Similarity=0.291 Sum_probs=125.5
Q ss_pred EEcCCCcCeEeCcCCCCcccCcceeEEEEEE--e-CCeEEEEEcCCEEEEEcCCCCCeEEeecCCCCCCCcccccccCcc
Q 036387 141 ETKDGGKTWAPRSIPSAEEEDFNYRFNSISF--K-GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRA 217 (334)
Q Consensus 141 ~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~--~-~~~~~~vG~~g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~ 217 (334)
...|+|++|+++..|.... ..|.+|.| . ++++|++|+.|.|++|+|+|+||+++..+.....+..
T Consensus 69 ~~~d~G~~W~q~~~p~~~~----~~L~~V~F~~~d~~~GwAVG~~G~IL~T~DGG~tW~~~~~~~~~~~~~~-------- 136 (398)
T PLN00033 69 DAAEQSSEWEQVDLPIDPG----VVLLDIAFVPDDPTHGFLLGTRQTLLETKDGGKTWVPRSIPSAEDEDFN-------- 136 (398)
T ss_pred ccccCCCccEEeecCCCCC----CceEEEEeccCCCCEEEEEcCCCEEEEEcCCCCCceECccCcccccccc--------
Confidence 3459999999998876532 25889999 4 3899999999999999999999999754321111111
Q ss_pred ccceEeeeeEeecCCEEEEEcCCeEEEecCCCcceeeEeccc--cCCCeeeEEEEeecCCeEEEEeCCCcEEEEcCCCcC
Q 036387 218 VARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPV--QSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT 295 (334)
Q Consensus 218 ~~~~i~~~~~~~~g~~~~~~~~g~i~~S~D~G~tW~w~~~~~--~~~~~~~~~v~~~~~~~~~~~G~~G~i~~S~DgG~t 295 (334)
..+..+.+. ++..|++++.|.|++|+|+|+||+-...+. +.. ...+....++.+++++..|.+|+|.|+|++
T Consensus 137 --~~l~~v~f~-~~~g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~---~~~i~~~~~~~~~ivg~~G~v~~S~D~G~t 210 (398)
T PLN00033 137 --YRFNSISFK-GKEGWIIGKPAILLHTSDGGETWERIPLSPKLPGE---PVLIKATGPKSAEMVTDEGAIYVTSNAGRN 210 (398)
T ss_pred --cceeeeEEE-CCEEEEEcCceEEEEEcCCCCCceECccccCCCCC---ceEEEEECCCceEEEeccceEEEECCCCCC
Confidence 123445554 467999999999999999999874333211 222 223333455678899999999999999999
Q ss_pred cEEcccCC-----------------CcccceeEEEEeeCCeEEEEeCCeeEEEEc
Q 036387 296 WIREKAAD-----------------NIAANLYSVKFINEKKGFVLGNDGVLLQYL 333 (334)
Q Consensus 296 W~~~~~~~-----------------~~~~~l~~i~~~~~~~~~a~G~~G~il~s~ 333 (334)
|+.+.... .....++.+...+++.++++|..|.++++.
T Consensus 211 W~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G~~~~s~ 265 (398)
T PLN00033 211 WKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRGNFYLTW 265 (398)
T ss_pred ceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCccEEEec
Confidence 99872210 112346677777889999999999999863
No 9
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=99.48 E-value=3.5e-12 Score=117.41 Aligned_cols=215 Identities=20% Similarity=0.212 Sum_probs=116.8
Q ss_pred cceEEe--cCCCCCcEEccc---CCCCCeeeEE--EEEecCCCCEEEEE---Ec-----CCe---EEEEcCCCcCeEeCc
Q 036387 92 EQPAKS--EEALSAWERVYI---PVDPGVVLLD--IAFVPDDLNHGFLL---GT-----RQT---LLETKDGGKTWAPRS 153 (334)
Q Consensus 92 g~i~~S--~DgG~tW~~~~~---p~~~~~~l~~--I~~~p~d~~~~~av---G~-----~g~---i~~S~DgG~TW~~~~ 153 (334)
..|.+| +|+|+||..... +......... +...+ ..++++. +. .+. .++|+|+|+||+...
T Consensus 18 ~~i~~S~s~D~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~--~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~ 95 (275)
T PF13088_consen 18 IVIRRSRSTDGGKTWSEPRIVADGPKPGRRYGNPSLVVDP--DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPT 95 (275)
T ss_dssp EEEEEECCCCCTTEEEEEEEEETSTBTTCEEEEEEEEEET--TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEE
T ss_pred EEEEEEEeeCCCCeeCCCEEEeeccccCCcccCcEEEEeC--CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCcc
Confidence 357888 999999987432 2211123332 33344 2555543 22 122 389999999999764
Q ss_pred -CCCCcccCcceeEEE--EEEeCCeEEEEE-------cCCEEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEe
Q 036387 154 -IPSAEEEDFNYRFNS--ISFKGKEGWIVG-------KPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQ 223 (334)
Q Consensus 154 -~p~~~~~~~~~~~~~--I~~~~~~~~~vG-------~~g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~ 223 (334)
++............. |...++++++.. ....+++|+|+|+||+...... ....... .
T Consensus 96 ~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~---~~~~~~e----------~ 162 (275)
T PF13088_consen 96 DLPPGWFGNFSGPGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIP---DGQGECE----------P 162 (275)
T ss_dssp EEHHHCCCSCEECSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECE---CSEEEEE----------E
T ss_pred ccccccccceeccceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeecccccc---ccCCcce----------e
Confidence 221100000011122 444456666542 2347889999999999986431 0001111 0
Q ss_pred eeeEeecCCEEEEEcC-----CeEEEecCCCcceeeE-eccccCCCeeeEEEEeecCCeEEEEeCC------CcEEEEcC
Q 036387 224 NMGWRADGGLWLLVRG-----GGLFLSKGTGITEEFE-EVPVQSRGFGILDVGYRSQDEAWAAGGS------GVLLKTTN 291 (334)
Q Consensus 224 ~~~~~~~g~~~~~~~~-----g~i~~S~D~G~tW~w~-~~~~~~~~~~~~~v~~~~~~~~~~~G~~------G~i~~S~D 291 (334)
.+...++|.+++.... -.+.+|.|+|+||+-. ...++.....+..+. .+++.++++... -.|+.|.|
T Consensus 163 ~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~r~~l~l~~S~D 241 (275)
T PF13088_consen 163 SIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPNPNSSISLVR-LSDGRLLLVYNNPDGRSNLSLYVSED 241 (275)
T ss_dssp EEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSSCCEEEEEEE-CTTSEEEEEEECSSTSEEEEEEEECT
T ss_pred EEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCcccCCceEEE-cCCCCEEEEEECCCCCCceEEEEEeC
Confidence 1222466777765432 2568999999998632 233443222333333 345666665442 35789999
Q ss_pred CCcCcEEcccCCCc---ccceeEEEEeeCCeEEE
Q 036387 292 GGKTWIREKAADNI---AANLYSVKFINEKKGFV 322 (334)
Q Consensus 292 gG~tW~~~~~~~~~---~~~l~~i~~~~~~~~~a 322 (334)
+|++|+....-... .....++...+++++++
T Consensus 242 ~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 242 GGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp TCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 99999976442111 13455666667777764
No 10
>smart00602 VPS10 VPS10 domain.
Probab=99.45 E-value=2e-11 Score=124.75 Aligned_cols=214 Identities=14% Similarity=0.130 Sum_probs=117.6
Q ss_pred cceEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEE--EEcCCeEEEEcCCCcCeEeCcCCCCcccCcceeEEEE
Q 036387 92 EQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFL--LGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSI 169 (334)
Q Consensus 92 g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~a--vG~~g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I 169 (334)
+.||+|+|+|+||+.+..... ..+..+...+.++...+. ....+.+|+|+|+|+||+.+..|... +..+
T Consensus 10 g~vyrS~D~G~TW~~i~~~~~--~~i~~i~~~~~~~p~~~~~~~~~~~~ly~S~D~GkTW~~~~~p~~~-------~~~l 80 (612)
T smart00602 10 SSVYISEDYGKTWKKIDEIEG--VIIETVISDFFNSSANKFKTILVKGYIFISSDEGKSFQKFTLPFPP-------LPSL 80 (612)
T ss_pred CcEEEecCCCcCceeccccCC--CceeEEEeCCcCCccceeEEEecCCcEEEeecCCcceeEEECCCCC-------ccce
Confidence 679999999999998842211 234444444333322222 12457799999999999998765421 2344
Q ss_pred EEeC---CeEEEEEcCC---EEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEc-----
Q 036387 170 SFKG---KEGWIVGKPA---ILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR----- 238 (334)
Q Consensus 170 ~~~~---~~~~~vG~~g---~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~----- 238 (334)
.+++ +.+++.+..+ .+|+|+|+|+||+.+.... +.-.-+|...... ..+..++....
T Consensus 81 ~~hp~~~~~il~~~~~~~~~~ly~S~DgG~tW~~i~~~v--~~cqf~~~~~~~~----------~~p~~I~~~~q~~~~~ 148 (612)
T smart00602 81 LYHPKHPDYVLAYSKDCNYKVLYVSKDFGKTWTEIQENV--ESCEFSWGSMGVY----------DFPDLVHISVKENSGA 148 (612)
T ss_pred EECCCCCCEEEEEecCCCCceEEEEcCCCCCcEEccccc--ceeEEEecCCCcC----------CCCcEEEEEeccCCCC
Confidence 5543 4466666665 8999999999999886431 1111122210000 00111222211
Q ss_pred CCeEEEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeC-----CCcEEEEcCCCcCcEEcccCCC--cc-ccee
Q 036387 239 GGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-----SGVLLKTTNGGKTWIREKAADN--IA-ANLY 310 (334)
Q Consensus 239 ~g~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~-----~G~i~~S~DgG~tW~~~~~~~~--~~-~~l~ 310 (334)
...+++|.|..+.-+...+ . . .+.++.. .++-++++.. .-.+|+|.|++ +|+++..+.. .. ..-+
T Consensus 149 ~~~Lv~S~D~f~~~~~~~~-~-~---~~~~f~~-~~~yl~va~~~~~~~~~~l~VS~Dg~-~f~~a~~P~~~~i~~~~~y 221 (612)
T smart00602 149 LTELVSSIDFFQRYDQSTI-F-L---DIVGFLL-TDEYLFVAVTDEDTTSRKLYVSNDRS-TFAMAKFPKYHALGKQQAY 221 (612)
T ss_pred ceEEEEeccccccCCccEe-e-e---cceeeEE-EccEEEEEEecCCCCeEEEEEECCCC-cceEEeCCCCcccCccccE
Confidence 1246777766431000111 1 0 1222222 2344554322 13589999965 9998876422 11 1234
Q ss_pred EEEEeeCCeEEEE------eCCeeEEEEc
Q 036387 311 SVKFINEKKGFVL------GNDGVLLQYL 333 (334)
Q Consensus 311 ~i~~~~~~~~~a~------G~~G~il~s~ 333 (334)
.|.-...+++++. +..|.||+|+
T Consensus 222 tildss~~~vfl~V~~~~~~~~g~ly~Sd 250 (612)
T smart00602 222 TILDSDEDSVFLHVSENNQNDTGNLYISD 250 (612)
T ss_pred EEEecCCCcEEEEEecCCCCceeEEEEEC
Confidence 4444467788887 7888899886
No 11
>smart00602 VPS10 VPS10 domain.
Probab=99.08 E-value=1.7e-08 Score=103.39 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=49.6
Q ss_pred cceEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCC---eEEEEcCCCcCeEeCc
Q 036387 92 EQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ---TLLETKDGGKTWAPRS 153 (334)
Q Consensus 92 g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g---~i~~S~DgG~TW~~~~ 153 (334)
+.+++|+|+|+||+.+..|.. .+..+.+.|.+++.+++.+..+ .+++|+|+|+||+.+.
T Consensus 55 ~~ly~S~D~GkTW~~~~~p~~---~~~~l~~hp~~~~~il~~~~~~~~~~ly~S~DgG~tW~~i~ 116 (612)
T smart00602 55 GYIFISSDEGKSFQKFTLPFP---PLPSLLYHPKHPDYVLAYSKDCNYKVLYVSKDFGKTWTEIQ 116 (612)
T ss_pred CcEEEeecCCcceeEEECCCC---CccceEECCCCCCEEEEEecCCCCceEEEEcCCCCCcEEcc
Confidence 469999999999999876643 2677889998888888887776 8999999999999774
No 12
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=98.92 E-value=2.9e-07 Score=87.89 Aligned_cols=220 Identities=18% Similarity=0.224 Sum_probs=112.1
Q ss_pred ceEEecCCCCCcEEcccCCCC----CeeeEEEEEecCCC-CEEEEE-Ec-----------------CCeEEEEcCCCcCe
Q 036387 93 QPAKSEEALSAWERVYIPVDP----GVVLLDIAFVPDDL-NHGFLL-GT-----------------RQTLLETKDGGKTW 149 (334)
Q Consensus 93 ~i~~S~DgG~tW~~~~~p~~~----~~~l~~I~~~p~d~-~~~~av-G~-----------------~g~i~~S~DgG~TW 149 (334)
.+.+|+|+|+||......... ........+. ++ +++++. +. .-.+.+|+|+|+||
T Consensus 49 v~~~S~D~G~tW~~~~~i~~~~~~~~~~~~p~~v~--~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW 126 (351)
T cd00260 49 VARRSTDGGKTWSPSTVISDGDGKSSRVKDPTVVV--DGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDDGITW 126 (351)
T ss_pred eEEEeccCCCcccccEEehhcCCCCCcEEcceEEE--cCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcCCcee
Confidence 478899999999975432211 0112223333 22 555443 11 12378899999999
Q ss_pred EeCc-CCCCcc-cCcceeE----EEEEEeCCeEEEE--E------cCCEEEEEcCCCCCeEEeecCCCCCCCcccccccC
Q 036387 150 APRS-IPSAEE-EDFNYRF----NSISFKGKEGWIV--G------KPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHN 215 (334)
Q Consensus 150 ~~~~-~p~~~~-~~~~~~~----~~I~~~~~~~~~v--G------~~g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~ 215 (334)
+... +..... ......+ ..|...++++++. + ....+++|+|+|+||+...... .....
T Consensus 127 ~~p~~l~~~~~~~~~~~~~~~~g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~---~~~~~----- 198 (351)
T cd00260 127 SSPRDLTPSVKGDNWAALFTGPGSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVN---DAGGC----- 198 (351)
T ss_pred cCCccCCccccCcceeEEEecCcCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCC---CCCCC-----
Confidence 7532 221110 0000111 1233334454432 1 1257899999999998643221 00000
Q ss_pred ccccceEeeeeEeecCCEEEEEcC-----CeEEEecCCCcceeeEecccc----------CCC--eeeEEEEeecCCeEE
Q 036387 216 RAVARRIQNMGWRADGGLWLLVRG-----GGLFLSKGTGITEEFEEVPVQ----------SRG--FGILDVGYRSQDEAW 278 (334)
Q Consensus 216 ~~~~~~i~~~~~~~~g~~~~~~~~-----g~i~~S~D~G~tW~w~~~~~~----------~~~--~~~~~v~~~~~~~~~ 278 (334)
.... +.-.++|.+++.... -.+++|.|+|+||+-...... ..+ ..++.+.......++
T Consensus 199 --~e~~---i~el~dG~l~~~~R~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~g~~~l 273 (351)
T cd00260 199 --SECS---VVELSDGKLYMYTRDNSGGRRPVYESRDMGTTWTEALGTLSRVWGNCPTRCGSGVQGSFITATIESGKKVM 273 (351)
T ss_pred --cCCE---EEEecCCEEEEEEeeCCCCcEEEEEEcCCCcCcccCcCCccccccccccCCCCcccceEEEeEecCCCEEE
Confidence 0111 122346777665322 247899999999854332111 111 122232211023344
Q ss_pred EEeC--------CCcEEEEcCCCcCcEEcccCCCcc--cceeEEEEeeC-----CeEEEEeCCe
Q 036387 279 AAGG--------SGVLLKTTNGGKTWIREKAADNIA--ANLYSVKFINE-----KKGFVLGNDG 327 (334)
Q Consensus 279 ~~G~--------~G~i~~S~DgG~tW~~~~~~~~~~--~~l~~i~~~~~-----~~~~a~G~~G 327 (334)
+... ...++.|.|+|++|.....-.... ....++.+.++ +.+++.-+.+
T Consensus 274 l~~~~~~~~~R~~l~l~~s~d~g~~w~~~~~i~~~~~~~~Ys~~~~~~~~~~~~~~~~~l~E~~ 337 (351)
T cd00260 274 LLSRPNSPDSRSNLTLWLTDNNGSRWLDVGPISNGTDGSGYSTLTELPDTGDSCGYLGLLYELG 337 (351)
T ss_pred EEeCCCCCCCCCceEEEEEeCCCceEEeeeeeccCCCceEEeeeeecCCccCCCCEEEEEEEcC
Confidence 4322 256899999999999986632222 33445666555 6666665554
No 13
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=98.92 E-value=1.2e-07 Score=87.16 Aligned_cols=178 Identities=18% Similarity=0.242 Sum_probs=89.2
Q ss_pred CeEEEE--cCCCcCeEeCcCCCCcc-cCcceeEEEEEEe-CCeEEEE---Ec-----CCE---EEEEcCCCCCeEEeecC
Q 036387 137 QTLLET--KDGGKTWAPRSIPSAEE-EDFNYRFNSISFK-GKEGWIV---GK-----PAI---LLHTSDAGESWERIPLS 201 (334)
Q Consensus 137 g~i~~S--~DgG~TW~~~~~p~~~~-~~~~~~~~~I~~~-~~~~~~v---G~-----~g~---i~~S~DgG~TW~~~~~~ 201 (334)
..|.+| +|+|+||++........ ....+.--.+... ++++++. +. .+. .++|+|+|+||+....
T Consensus 18 ~~i~~S~s~D~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~- 96 (275)
T PF13088_consen 18 IVIRRSRSTDGGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTD- 96 (275)
T ss_dssp EEEEEECCCCCTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEE-
T ss_pred EEEEEEEeeCCCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccc-
Confidence 357888 99999999754211111 1111111122233 3666643 22 122 3999999999999752
Q ss_pred CCCCCC-cccccccCccccceEee-eeEeecCCEEEEE-------cCCeEEEecCCCcceeeEeccccCCCeeeEEEEee
Q 036387 202 SQLPGD-MAFWQPHNRAVARRIQN-MGWRADGGLWLLV-------RGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYR 272 (334)
Q Consensus 202 ~~l~g~-~~~~~~~~~~~~~~i~~-~~~~~~g~~~~~~-------~~g~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~ 272 (334)
++.. ...... .... +....+|.+++.. ....+++|.|+|+||+............-..+...
T Consensus 97 --l~~~~~~~~~~-------~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~ 167 (275)
T PF13088_consen 97 --LPPGWFGNFSG-------PGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVEL 167 (275)
T ss_dssp --EHHHCCCSCEE-------CSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEE
T ss_pred --cccccccceec-------cceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEEC
Confidence 1100 000000 0001 1113466665542 12347799999999854443221111122334444
Q ss_pred cCCeEEEEeCC-----CcEEEEcCCCcCcEEcccC--CCcccceeEEEEeeCCeEEEEeC
Q 036387 273 SQDEAWAAGGS-----GVLLKTTNGGKTWIREKAA--DNIAANLYSVKFINEKKGFVLGN 325 (334)
Q Consensus 273 ~~~~~~~~G~~-----G~i~~S~DgG~tW~~~~~~--~~~~~~l~~i~~~~~~~~~a~G~ 325 (334)
+++.+++.-.. -.+.+|+|+|+||+..... ......+..+. .++++++++.+
T Consensus 168 ~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~ 226 (275)
T PF13088_consen 168 PDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPNPNSSISLVR-LSDGRLLLVYN 226 (275)
T ss_dssp TTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSSCCEEEEEEE-CTTSEEEEEEE
T ss_pred CCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCcccCCceEEE-cCCCCEEEEEE
Confidence 67777775322 2568999999999986421 01122333333 34667766654
No 14
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=98.15 E-value=3.3e-05 Score=73.72 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=76.2
Q ss_pred EEEEcCCCcCeEeCcCCCCccc-CcceeEEEEEE-eC-CeEEEE--Ec----------------CCEEEEEcCCCCCeEE
Q 036387 139 LLETKDGGKTWAPRSIPSAEEE-DFNYRFNSISF-KG-KEGWIV--GK----------------PAILLHTSDAGESWER 197 (334)
Q Consensus 139 i~~S~DgG~TW~~~~~p~~~~~-~~~~~~~~I~~-~~-~~~~~v--G~----------------~g~i~~S~DgG~TW~~ 197 (334)
+.+|+|+|+||.+......... ... ......+ .+ +++++. .. .-.+.+|+|+|+||+.
T Consensus 50 ~~~S~D~G~tW~~~~~i~~~~~~~~~-~~~p~~v~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~ 128 (351)
T cd00260 50 ARRSTDGGKTWSPSTVISDGDGKSSR-VKDPTVVVDGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSS 128 (351)
T ss_pred EEEeccCCCcccccEEehhcCCCCCc-EEcceEEEcCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcCCceecC
Confidence 6779999999997543221110 000 1111112 23 455432 10 1358899999999986
Q ss_pred eec-CCCCCCCcccccccCccccceEeeeeEeecCCEEEEEc--------CCeEEEecCCCcceeeEecccc-CCCeeeE
Q 036387 198 IPL-SSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR--------GGGLFLSKGTGITEEFEEVPVQ-SRGFGIL 267 (334)
Q Consensus 198 ~~~-~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~--------~g~i~~S~D~G~tW~w~~~~~~-~~~~~~~ 267 (334)
-.. ...... ..|..........+ ...+|++++... ...+++|.|+|+||+....... ... .--
T Consensus 129 p~~l~~~~~~--~~~~~~~~~~g~gi----~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~-~e~ 201 (351)
T cd00260 129 PRDLTPSVKG--DNWAALFTGPGSGI----QMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGC-SEC 201 (351)
T ss_pred CccCCccccC--cceeEEEecCcCeE----EecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCC-cCC
Confidence 321 111100 00100000000011 123566655321 2357899999999865443322 110 001
Q ss_pred EEEeecCCeEEEEeC-----CCcEEEEcCCCcCcEEccc
Q 036387 268 DVGYRSQDEAWAAGG-----SGVLLKTTNGGKTWIREKA 301 (334)
Q Consensus 268 ~v~~~~~~~~~~~G~-----~G~i~~S~DgG~tW~~~~~ 301 (334)
.+...+++.+++.-. .-.+++|.|+|+||+....
T Consensus 202 ~i~el~dG~l~~~~R~~~~~~~~~~~S~D~G~tWs~~~~ 240 (351)
T cd00260 202 SVVELSDGKLYMYTRDNSGGRRPVYESRDMGTTWTEALG 240 (351)
T ss_pred EEEEecCCEEEEEEeeCCCCcEEEEEEcCCCcCcccCcC
Confidence 222233566665421 2247899999999998754
No 15
>KOG3511 consensus Sortilin and related receptors [General function prediction only]
Probab=97.95 E-value=0.00016 Score=74.20 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=41.2
Q ss_pred cceEEecCCCCCcEEcccCCCCCeeeEEEE---EecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCC
Q 036387 92 EQPAKSEEALSAWERVYIPVDPGVVLLDIA---FVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPS 156 (334)
Q Consensus 92 g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~---~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~ 156 (334)
.++|.|.|+|++|+.+.. ........++. +.. .-....+.+..+.+|.|.|.|++|.++.++.
T Consensus 215 qkL~iS~D~G~tW~li~e-v~~~~~~~dv~~~~~~~-~~~~~e~~~~~~~fyyT~D~Gksw~e~~l~~ 280 (720)
T KOG3511|consen 215 QKLWISKDGGRTWELIHE-VTGLYWFGDVGNIPFTI-PYRAFEAIDVSSEFYYTLDRGKSWNEITLSE 280 (720)
T ss_pred CcEEEecCCCccceEeee-ccceeEEeeccCccccc-ccccccccCCCceEEEEcccCcccceeeccc
Confidence 479999999999999875 32112222222 221 1122334445678999999999999988753
No 16
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=97.37 E-value=0.00015 Score=33.90 Aligned_cols=12 Identities=25% Similarity=0.927 Sum_probs=9.8
Q ss_pred EEEcCCCCCeEE
Q 036387 186 LHTSDAGESWER 197 (334)
Q Consensus 186 ~~S~DgG~TW~~ 197 (334)
|+|+|+|+||+.
T Consensus 1 ~~S~D~G~TW~~ 12 (12)
T PF02012_consen 1 YYSTDGGKTWKK 12 (12)
T ss_dssp EEESSTTSS-EE
T ss_pred CEeCCCcccCcC
Confidence 689999999984
No 17
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=97.25 E-value=0.00025 Score=33.19 Aligned_cols=12 Identities=50% Similarity=1.049 Sum_probs=9.8
Q ss_pred EEEcCCCcCcEE
Q 036387 287 LKTTNGGKTWIR 298 (334)
Q Consensus 287 ~~S~DgG~tW~~ 298 (334)
|+|+|+|+||+.
T Consensus 1 ~~S~D~G~TW~~ 12 (12)
T PF02012_consen 1 YYSTDGGKTWKK 12 (12)
T ss_dssp EEESSTTSS-EE
T ss_pred CEeCCCcccCcC
Confidence 689999999984
No 18
>KOG3511 consensus Sortilin and related receptors [General function prediction only]
Probab=97.20 E-value=0.0032 Score=64.84 Aligned_cols=80 Identities=29% Similarity=0.405 Sum_probs=55.1
Q ss_pred eeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCCcccCcceeEE-EE---EEe-C-CeEEEEEcCCEEEEEc
Q 036387 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFN-SI---SFK-G-KEGWIVGKPAILLHTS 189 (334)
Q Consensus 116 ~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~-~I---~~~-~-~~~~~vG~~g~i~~S~ 189 (334)
.+..+.++|..++...+...+..+|.|.|+|.||+.+.. ... .++. .+ -+. + .+..+.+..+.+|+|+
T Consensus 194 ~~~~ll~~ps~~D~~l~~~~dqkL~iS~D~G~tW~li~e-v~~-----~~~~~dv~~~~~~~~~~~~e~~~~~~~fyyT~ 267 (720)
T KOG3511|consen 194 PAADLLFHPSVSDGLLLLSTDQKLWISKDGGRTWELIHE-VTG-----LYWFGDVGNIPFTIPYRAFEAIDVSSEFYYTL 267 (720)
T ss_pred hhhhheeccccCccceeeeccCcEEEecCCCccceEeee-ccc-----eeEEeeccCcccccccccccccCCCceEEEEc
Confidence 445667777666666777777799999999999998764 211 1221 11 112 1 3444556678999999
Q ss_pred CCCCCeEEeecC
Q 036387 190 DAGESWERIPLS 201 (334)
Q Consensus 190 DgG~TW~~~~~~ 201 (334)
|.|++|.++...
T Consensus 268 D~Gksw~e~~l~ 279 (720)
T KOG3511|consen 268 DRGKSWNEITLS 279 (720)
T ss_pred ccCcccceeecc
Confidence 999999999864
No 19
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=97.08 E-value=0.0032 Score=56.20 Aligned_cols=155 Identities=15% Similarity=0.214 Sum_probs=82.5
Q ss_pred EEEEEEeC-CeEEEEEcCCEEEEE---cCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCCe
Q 036387 166 FNSISFKG-KEGWIVGKPAILLHT---SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG 241 (334)
Q Consensus 166 ~~~I~~~~-~~~~~vG~~g~i~~S---~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~ 241 (334)
+..|.+.+ .++|++-. +.+|+. ++++.+|..... ++. . .-|.. ...+.+.+.|.||++..+|.
T Consensus 36 ~~~i~~~P~g~lY~I~~-~~lY~~~~~~~~~~~~~~~~~--~Ig-~-g~W~~--------F~~i~~d~~G~LYaV~~~G~ 102 (229)
T PF14517_consen 36 FRDIAAGPNGRLYAIRN-DGLYRGSPSSSGGNTWDSGSK--QIG-D-GGWNS--------FKFIFFDPTGVLYAVTPDGK 102 (229)
T ss_dssp -SEEEE-TTS-EEEEET-TEEEEES---STT--HHHH-E--EEE---S-GGG---------SEEEE-TTS-EEEEETT-E
T ss_pred cceEEEcCCceEEEEEC-CceEEecCCccCcccccccCc--ccc-c-Ccccc--------eeEEEecCCccEEEeccccc
Confidence 55677776 77888865 478888 788999973322 121 0 11321 22455677889999999999
Q ss_pred EEEe---cCCCcceeeEe-ccccCCCe-eeEEEEeecCCeEEEEeCCCcEEEE---cCCCcCcEEcccC--CCcccceeE
Q 036387 242 LFLS---KGTGITEEFEE-VPVQSRGF-GILDVGYRSQDEAWAAGGSGVLLKT---TNGGKTWIREKAA--DNIAANLYS 311 (334)
Q Consensus 242 i~~S---~D~G~tW~w~~-~~~~~~~~-~~~~v~~~~~~~~~~~G~~G~i~~S---~DgG~tW~~~~~~--~~~~~~l~~ 311 (334)
+||- .++..+|.-.. ..+...+- .+..+-+.+++.+|++..+|.+|+. .+++.+|-....- ...-..+.-
T Consensus 103 lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~ 182 (229)
T PF14517_consen 103 LYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHF 182 (229)
T ss_dssp EEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETTE-EEEE---SSTT--HHHH-EEEESSSGGGEEE
T ss_pred eeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCCCceEEeCCCCCCCCccccccceeccCCcccceE
Confidence 8774 45667663201 11211121 2455656678889999888877665 6777889774331 011134777
Q ss_pred EEEeeCCeEEEEeCCeeEEEEc
Q 036387 312 VKFINEKKGFVLGNDGVLLQYL 333 (334)
Q Consensus 312 i~~~~~~~~~a~G~~G~il~s~ 333 (334)
|.+.+++.+|+|-.+|.|+|..
T Consensus 183 i~~~~~g~L~~V~~~G~lyr~~ 204 (229)
T PF14517_consen 183 IFFSPDGNLWAVKSNGKLYRGR 204 (229)
T ss_dssp EEE-TTS-EEEE-ETTEEEEES
T ss_pred EeeCCCCcEEEEecCCEEeccC
Confidence 8888899999998899998864
No 20
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=96.64 E-value=0.058 Score=50.77 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=65.1
Q ss_pred EEcCCCcCeEeCcCCC-CcccCcceeEEEE-E-EeCCeEEE-EEcC----------CEEEEEcCCCCCeEEeecCCCCCC
Q 036387 141 ETKDGGKTWAPRSIPS-AEEEDFNYRFNSI-S-FKGKEGWI-VGKP----------AILLHTSDAGESWERIPLSSQLPG 206 (334)
Q Consensus 141 ~S~DgG~TW~~~~~p~-~~~~~~~~~~~~I-~-~~~~~~~~-vG~~----------g~i~~S~DgG~TW~~~~~~~~l~g 206 (334)
.+.|+|++|+...... .........+.+- . +.++.+|+ +|.. ..+++++|+|.+|......+....
T Consensus 34 ~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~ 113 (310)
T PF13859_consen 34 YSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSF 113 (310)
T ss_dssp EESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS--SSTTEEEEEEEEESSSSEE---EE-GGGS-
T ss_pred EeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEeccccccccceeeeeccCCcceeeecccCCchhc
Confidence 3789999998754211 1111111112111 1 23566764 4431 378899999999998764321110
Q ss_pred C--cccccccCccccceEeeeeEeecCCEEEE----EcCC-----eEEEecCCCcceeeEeccccCCCeee-EEEEeecC
Q 036387 207 D--MAFWQPHNRAVARRIQNMGWRADGGLWLL----VRGG-----GLFLSKGTGITEEFEEVPVQSRGFGI-LDVGYRSQ 274 (334)
Q Consensus 207 ~--~~~~~~~~~~~~~~i~~~~~~~~g~~~~~----~~~g-----~i~~S~D~G~tW~w~~~~~~~~~~~~-~~v~~~~~ 274 (334)
. ..|.... ...| ...||.+++- ..++ -|.+|+|+|++|.+.+--.+.. +. -.|.--.+
T Consensus 114 ~~~~~figgG----GSGV----~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~g--C~~psv~EWe~ 183 (310)
T PF13859_consen 114 QSWKQFIGGG----GSGV----VMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAG--CSDPSVVEWED 183 (310)
T ss_dssp EEEEEEEE-S----EE-E----E-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----TT---EEEEEEEE-T
T ss_pred cccceeecCC----CCce----EEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCCC--cceEEEEeccC
Confidence 0 0011000 0011 1234544331 1122 3678999999998766433321 11 11211124
Q ss_pred CeEEEEe--CCC--cEEEEcCCCcCcEEcc
Q 036387 275 DEAWAAG--GSG--VLLKTTNGGKTWIREK 300 (334)
Q Consensus 275 ~~~~~~G--~~G--~i~~S~DgG~tW~~~~ 300 (334)
+.++++. .+| .+|.|.|-|+||...-
T Consensus 184 gkLlM~~~c~~g~rrVYeS~DmG~tWtea~ 213 (310)
T PF13859_consen 184 GKLLMMTACDDGRRRVYESGDMGTTWTEAL 213 (310)
T ss_dssp TEEEEEEE-TTS---EEEESSTTSS-EE-T
T ss_pred CeeEEEEecccceEEEEEEcccceehhhcc
Confidence 5655442 245 6999999999999843
No 21
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=96.54 E-value=0.025 Score=50.59 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=60.8
Q ss_pred eeeEeecCCEEEEEcCCeEEEe---cCCCcceeeEeccccCCC-eeeEEEEeecCCeEEEEeCCCcEEEE---cCCCcCc
Q 036387 224 NMGWRADGGLWLLVRGGGLFLS---KGTGITEEFEEVPVQSRG-FGILDVGYRSQDEAWAAGGSGVLLKT---TNGGKTW 296 (334)
Q Consensus 224 ~~~~~~~g~~~~~~~~g~i~~S---~D~G~tW~w~~~~~~~~~-~~~~~v~~~~~~~~~~~G~~G~i~~S---~DgG~tW 296 (334)
.+.+.+++.+|++-++ .+|+. .+++.+|......+...+ ..+..|.+.+.+.+|++..+|.|||- .+++.+|
T Consensus 38 ~i~~~P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W 116 (229)
T PF14517_consen 38 DIAAGPNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNW 116 (229)
T ss_dssp EEEE-TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--H
T ss_pred eEEEcCCceEEEEECC-ceEEecCCccCcccccccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcch
Confidence 3555788889988754 88888 678887743333344331 13446666778999999999988664 6889999
Q ss_pred EE-ccc-C-CCcccceeEEEEeeCCeEEEEeCCeeEEEE
Q 036387 297 IR-EKA-A-DNIAANLYSVKFINEKKGFVLGNDGVLLQY 332 (334)
Q Consensus 297 ~~-~~~-~-~~~~~~l~~i~~~~~~~~~a~G~~G~il~s 332 (334)
.. ... . ...=..+..|-+.+++.+|++..+|.++|.
T Consensus 117 ~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~dg~~~~~ 155 (229)
T PF14517_consen 117 IGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPDGRLYRR 155 (229)
T ss_dssp HH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETTE-EEEE
T ss_pred hhccceecccCCCccceEEEeCCCccEEEEcCCCceEEe
Confidence 65 111 1 011134667777789999999999977775
No 22
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.62 E-value=1.8 Score=39.85 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=65.4
Q ss_pred eeEeecCCEEEEEcCCe-EEEecC-CCcceeeEeccccCC-CeeeEEEEeecCCeEEEEeC-CCcEEEEcCCCcCcEEcc
Q 036387 225 MGWRADGGLWLLVRGGG-LFLSKG-TGITEEFEEVPVQSR-GFGILDVGYRSQDEAWAAGG-SGVLLKTTNGGKTWIREK 300 (334)
Q Consensus 225 ~~~~~~g~~~~~~~~g~-i~~S~D-~G~tW~w~~~~~~~~-~~~~~~v~~~~~~~~~~~G~-~G~i~~S~DgG~tW~~~~ 300 (334)
+...++|.+|++.-.+. |.+-.. .|. -+.++.|.. ......+.-.+-+++|+... .|.+++-.-.-++|+..+
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~---aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eyp 270 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGH---AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP 270 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCC---cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeee
Confidence 44467888988764433 333322 132 244444432 11233444445688999754 467888877778899999
Q ss_pred cCCCcccceeEEEEeeCCeEEEE-eCCeeEEEEc
Q 036387 301 AADNIAANLYSVKFINEKKGFVL-GNDGVLLQYL 333 (334)
Q Consensus 301 ~~~~~~~~l~~i~~~~~~~~~a~-G~~G~il~s~ 333 (334)
.+ .....-+++..+..+++|.. -..|.|+|.+
T Consensus 271 LP-gs~arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 271 LP-GSKARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred CC-CCCCCcceeeeccCCcEEeeccccCceeecC
Confidence 86 33456778877778889984 4666777765
No 23
>PHA02713 hypothetical protein; Provisional
Probab=94.57 E-value=6.2 Score=40.31 Aligned_cols=196 Identities=10% Similarity=0.111 Sum_probs=94.0
Q ss_pred CCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcC--C-----eEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEeC
Q 036387 101 LSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTR--Q-----TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG 173 (334)
Q Consensus 101 G~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~--g-----~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~ 173 (334)
-.+|..+.....+ ..-.+++.. + +.+|++|.. + .+++=+=.-.+|+++... ... . ..+ ++...+
T Consensus 281 ~~~W~~l~~mp~~-r~~~~~a~l--~-~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~~~--R-~~~-~~~~~~ 351 (557)
T PHA02713 281 TMEYSVISTIPNH-IINYASAIV--D-NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-IKN--R-CRF-SLAVID 351 (557)
T ss_pred CCeEEECCCCCcc-ccceEEEEE--C-CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-cch--h-hce-eEEEEC
Confidence 4579887632221 122345554 2 678888753 1 133222234579876421 111 1 112 344457
Q ss_pred CeEEEEEcC-C-----EEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCC-------
Q 036387 174 KEGWIVGKP-A-----ILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGG------- 240 (334)
Q Consensus 174 ~~~~~vG~~-g-----~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g------- 240 (334)
+.+|++|.. + .+.+-+=.-.+|+.++. ++..... . ....-++.+|+.|+..
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~---mp~~r~~-----------~--~~~~~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD---MPIALSS-----------Y--GMCVLDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCC---CCccccc-----------c--cEEEECCEEEEEeCCCccccccc
Confidence 889988642 1 23333333457988763 2211100 0 1112367788876421
Q ss_pred -----------------eEEEecCCCcceeeEeccc-cCCCeeeEEEEeecCCeEEEEeCCC-------cEEEEcCCC-c
Q 036387 241 -----------------GLFLSKGTGITEEFEEVPV-QSRGFGILDVGYRSQDEAWAAGGSG-------VLLKTTNGG-K 294 (334)
Q Consensus 241 -----------------~i~~S~D~G~tW~w~~~~~-~~~~~~~~~v~~~~~~~~~~~G~~G-------~i~~S~DgG-~ 294 (334)
.+.+-...-. +|+.++. +... ...+++. -++.+|++|+.. .+.+-.-.- +
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~~r-~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~ 491 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWTGT-IRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYN 491 (557)
T ss_pred ccccccccccccccccceEEEECCCCC--eEeecCCCCccc-ccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCC
Confidence 1222222223 3566542 2211 1112222 257899987631 233333333 4
Q ss_pred CcEEcccCCCcccceeEEEEeeCCeEEEEeC-Ce
Q 036387 295 TWIREKAADNIAANLYSVKFINEKKGFVLGN-DG 327 (334)
Q Consensus 295 tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~-~G 327 (334)
.|+.+..- +.......++.. ++++|++|. +|
T Consensus 492 ~W~~~~~m-~~~r~~~~~~~~-~~~iyv~Gg~~~ 523 (557)
T PHA02713 492 GWELITTT-ESRLSALHTILH-DNTIMMLHCYES 523 (557)
T ss_pred CeeEcccc-CcccccceeEEE-CCEEEEEeeecc
Confidence 79998763 333444455544 689999875 55
No 24
>PHA02790 Kelch-like protein; Provisional
Probab=94.50 E-value=5.8 Score=39.67 Aligned_cols=169 Identities=9% Similarity=0.079 Sum_probs=83.8
Q ss_pred CEEEEEEcCC------eEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEeCCeEEEEEcC---CEEEEEcCCCCCeEEe
Q 036387 128 NHGFLLGTRQ------TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKP---AILLHTSDAGESWERI 198 (334)
Q Consensus 128 ~~~~avG~~g------~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~~~~~~vG~~---g~i~~S~DgG~TW~~~ 198 (334)
+.+|++|... .+++-+=.-.+|.++...... .. .. ++...++.+|++|.. ..+.+-...-.+|+.+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~---r~-~~-~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP---RL-YA-SGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch---hh-cc-eEEEECCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 5677776421 232222234679887532211 11 12 233457889988753 2344444445679887
Q ss_pred ecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCC----eEEEecCCCcceeeEeccccCCC-eeeEEEEeec
Q 036387 199 PLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGG----GLFLSKGTGITEEFEEVPVQSRG-FGILDVGYRS 273 (334)
Q Consensus 199 ~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g----~i~~S~D~G~tW~w~~~~~~~~~-~~~~~v~~~~ 273 (334)
+. ++-... ......-++.+|+.|+.. .+.+-.-... +|+.++..... .....+. -
T Consensus 347 ~~---l~~~r~-------------~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~~~--~ 406 (480)
T PHA02790 347 PS---LLKPRC-------------NPAVASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCALV--F 406 (480)
T ss_pred CC---CCCCCc-------------ccEEEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceEEE--E
Confidence 63 221110 001123467888886421 1211111223 35665332211 1112222 3
Q ss_pred CCeEEEEeCCCcEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeC
Q 036387 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325 (334)
Q Consensus 274 ~~~~~~~G~~G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~ 325 (334)
++.+|++|..-.+|- -.-.+|+.++.. +.+..-.+++.. ++++|++|.
T Consensus 407 ~~~IYv~GG~~e~yd--p~~~~W~~~~~m-~~~r~~~~~~v~-~~~IYviGG 454 (480)
T PHA02790 407 GRRLFLVGRNAEFYC--ESSNTWTLIDDP-IYPRDNPELIIV-DNKLLLIGG 454 (480)
T ss_pred CCEEEEECCceEEec--CCCCcEeEcCCC-CCCccccEEEEE-CCEEEEECC
Confidence 689999985433432 234689998753 333344455544 679999986
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=93.91 E-value=5.1 Score=36.77 Aligned_cols=216 Identities=13% Similarity=0.155 Sum_probs=117.0
Q ss_pred ceeEEEecCCC-ccceEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCC--e-EEEEcCCCcCeEeCcCC
Q 036387 80 LSISLAATTGL-YEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ--T-LLETKDGGKTWAPRSIP 155 (334)
Q Consensus 80 ~g~~~~~g~~~-~g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g--~-i~~S~DgG~TW~~~~~p 155 (334)
-|.++|.++.. -..|++ +.+..|+.+..-...+..+.+|++.+ ....+|.-+.. . |++ .|.+.-.+-+..-
T Consensus 72 ~g~~La~aSFD~t~~Iw~--k~~~efecv~~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe-~deddEfec~aVL 146 (312)
T KOG0645|consen 72 HGRYLASASFDATVVIWK--KEDGEFECVATLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWE-IDEDDEFECIAVL 146 (312)
T ss_pred CCcEEEEeeccceEEEee--cCCCceeEEeeeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEE-ecCCCcEEEEeee
Confidence 36667776651 133554 44568988775444557899999974 35556655443 2 344 4556666655432
Q ss_pred CCcccCcceeEEEEEEeCC-eEEEEEc---CCEEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecC
Q 036387 156 SAEEEDFNYRFNSISFKGK-EGWIVGK---PAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADG 231 (334)
Q Consensus 156 ~~~~~~~~~~~~~I~~~~~-~~~~vG~---~g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g 231 (334)
..+ ..-+..+.++|. .+.+... .-.+|+..| +..|+-+.. +.+-. .++-.+.|.+.|
T Consensus 147 ~~H----tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~t---l~g~~-----------~TVW~~~F~~~G 207 (312)
T KOG0645|consen 147 QEH----TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQT---LDGHE-----------NTVWSLAFDNIG 207 (312)
T ss_pred ccc----cccccEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEE---ecCcc-----------ceEEEEEecCCC
Confidence 221 123555666773 3333332 237888887 889998874 22211 023344555545
Q ss_pred CE-EEEEcCCeEEEecCCCcceeeEec-cccC-CCeeeEEEEeecCCeEEE-EeCCC--cEEEEcC--CCcCcEEcccCC
Q 036387 232 GL-WLLVRGGGLFLSKGTGITEEFEEV-PVQS-RGFGILDVGYRSQDEAWA-AGGSG--VLLKTTN--GGKTWIREKAAD 303 (334)
Q Consensus 232 ~~-~~~~~~g~i~~S~D~G~tW~w~~~-~~~~-~~~~~~~v~~~~~~~~~~-~G~~G--~i~~S~D--gG~tW~~~~~~~ 303 (334)
.- .-.++++.+. -|... .++. ....++.+... +.+++ +|.++ .+|+..| .+-+|+.+...+
T Consensus 208 ~rl~s~sdD~tv~---------Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~ 276 (312)
T KOG0645|consen 208 SRLVSCSDDGTVS---------IWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKE 276 (312)
T ss_pred ceEEEecCCcceE---------eeeeccCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhh
Confidence 32 2222232211 12211 1111 11246667664 22333 34444 3577766 457898876432
Q ss_pred Ccc-cceeEEEEee--CCeEEEEeCCeeEE
Q 036387 304 NIA-ANLYSVKFIN--EKKGFVLGNDGVLL 330 (334)
Q Consensus 304 ~~~-~~l~~i~~~~--~~~~~a~G~~G~il 330 (334)
+.+ ..+.+|.+.+ .+++...|++|++-
T Consensus 277 ~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~ 306 (312)
T KOG0645|consen 277 GAHEVDVNSVQWNPKVSNRLASGGDDGIVN 306 (312)
T ss_pred cccccccceEEEcCCCCCceeecCCCceEE
Confidence 222 4789999987 67888889999764
No 26
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.03 E-value=1.4 Score=44.27 Aligned_cols=146 Identities=14% Similarity=0.209 Sum_probs=75.2
Q ss_pred eeeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEe-CCeEEEEEcCCEEEEEcCCCC
Q 036387 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK-GKEGWIVGKPAILLHTSDAGE 193 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~-~~~~~~vG~~g~i~~S~DgG~ 193 (334)
..+.++.++- .+.+|+...+|..+...=-|+-=+....|... .++.+..+ .+++|+....|..+++. .|
T Consensus 165 ~~V~aLv~D~--~g~lWvgT~dGL~~fd~~~gkalql~s~~~dk------~I~al~~d~qg~LWVGTdqGv~~~e~-~G- 234 (671)
T COG3292 165 TPVVALVFDA--NGRLWVGTPDGLSYFDAGRGKALQLASPPLDK------AINALIADVQGRLWVGTDQGVYLQEA-EG- 234 (671)
T ss_pred ccceeeeeec--cCcEEEecCCcceEEccccceEEEcCCCcchh------hHHHHHHHhcCcEEEEeccceEEEch-hh-
Confidence 5667777753 36778766667544432223323222222210 23333322 36788887777555544 45
Q ss_pred CeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCCeE-EEecCCCcceeeEeccccCCCeeeEEEEee
Q 036387 194 SWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL-FLSKGTGITEEFEEVPVQSRGFGILDVGYR 272 (334)
Q Consensus 194 TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i-~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~ 272 (334)
|....-...+|.. .|..+.-+..|.+|+.+++|-. ++..+.|.. ....+.+..-..+..+..+
T Consensus 235 -~~~sn~~~~lp~~-------------~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq--~~~~~~~l~~S~vnsL~~D 298 (671)
T COG3292 235 -WRASNWGPMLPSG-------------NILLLVQDAQGELWIGTENGLWRTRLPRQGLQ--IPLSKMHLGVSTVNSLWLD 298 (671)
T ss_pred -ccccccCCCCcch-------------heeeeecccCCCEEEeecccceeEecCCCCcc--ccccccCCccccccceeec
Confidence 4443322223321 1222222456789999988654 788888862 2322222211234555555
Q ss_pred cCCeEEEEeCCCcE
Q 036387 273 SQDEAWAAGGSGVL 286 (334)
Q Consensus 273 ~~~~~~~~G~~G~i 286 (334)
.++.+|+....|.+
T Consensus 299 ~dGsLWv~t~~giv 312 (671)
T COG3292 299 TDGSLWVGTYGGIV 312 (671)
T ss_pred cCCCEeeeccCceE
Confidence 67888885555444
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=92.99 E-value=7.3 Score=35.79 Aligned_cols=193 Identities=12% Similarity=0.208 Sum_probs=107.7
Q ss_pred eeEEEEEecCCCCEEEEEEc-CCe-EEEEcCCCcCeEeCcC-CCCcccCcceeEEEEEEeC-CeEEEEEcC-CEEEEEcC
Q 036387 116 VLLDIAFVPDDLNHGFLLGT-RQT-LLETKDGGKTWAPRSI-PSAEEEDFNYRFNSISFKG-KEGWIVGKP-AILLHTSD 190 (334)
Q Consensus 116 ~l~~I~~~p~d~~~~~avG~-~g~-i~~S~DgG~TW~~~~~-p~~~~~~~~~~~~~I~~~~-~~~~~vG~~-g~i~~S~D 190 (334)
.+-.+++.|. ..+++|.+. +-. -.-+.-+|.+|+-... ...+ .-.++.|+..| .+..+.+.. ..+-.-.+
T Consensus 16 r~W~~awhp~-~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~h----krsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 16 RVWSVAWHPG-KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGH----KRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred cEEEEEeccC-CceEEEeecCCceEEEEecCCCCcEEEEEeccccc----hheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 5677778652 134565543 322 2224444889986642 2221 12588888887 565555542 33333344
Q ss_pred CCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCC-eEE-EecCCCcceeeEeccccCC-CeeeE
Q 036387 191 AGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGG-GLF-LSKGTGITEEFEEVPVQSR-GFGIL 267 (334)
Q Consensus 191 gG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g-~i~-~S~D~G~tW~w~~~~~~~~-~~~~~ 267 (334)
.+..|+.+..- .|-. .-+..++|+.+|..+++-... .++ .-.|.+. ++.-..+-.. ..-+-
T Consensus 91 ~~~efecv~~l---EGHE-----------nEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd--Efec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 91 EDGEFECVATL---EGHE-----------NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD--EFECIAVLQEHTQDVK 154 (312)
T ss_pred CCCceeEEeee---eccc-----------cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC--cEEEEeeecccccccc
Confidence 45689998753 3211 134567788888877654332 232 2223332 2444332211 12344
Q ss_pred EEEeecCCeEEEEeCC-C--cEEEEcCCCcCcEEcccCCCcccceeEEEEeeCC-eEEEEeCCeeEE
Q 036387 268 DVGYRSQDEAWAAGGS-G--VLLKTTNGGKTWIREKAADNIAANLYSVKFINEK-KGFVLGNDGVLL 330 (334)
Q Consensus 268 ~v~~~~~~~~~~~G~~-G--~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~-~~~a~G~~G~il 330 (334)
.+.+.+...+++...+ . .+|+..| +..|+-...-++-..++++++|.+.| ++.-+.++|.+.
T Consensus 155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 155 HVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence 5566555556665443 3 4677777 77899887743334589999998755 677777888654
No 28
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.63 E-value=15 Score=36.25 Aligned_cols=217 Identities=11% Similarity=0.036 Sum_probs=115.9
Q ss_pred ccceeEEEecCCCccceEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCC
Q 036387 78 LSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSA 157 (334)
Q Consensus 78 ~a~g~~~~~g~~~~g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~ 157 (334)
-..|.++|+|+. .+..+--| =++=..+..-.....+++-+.|.|. .++.++.|++..+.+=.|--.--.+..+...
T Consensus 77 R~DG~LlaaGD~--sG~V~vfD-~k~r~iLR~~~ah~apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h 152 (487)
T KOG0310|consen 77 RSDGRLLAAGDE--SGHVKVFD-MKSRVILRQLYAHQAPVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYVQAELSGH 152 (487)
T ss_pred ecCCeEEEccCC--cCcEEEec-cccHHHHHHHhhccCceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence 456888888875 33555555 2330001011112367888899884 5777888877766555553222233233222
Q ss_pred cccCcceeEEEEEEeC--CeEEEEEcCCEEEE---EcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCC
Q 036387 158 EEEDFNYRFNSISFKG--KEGWIVGKPAILLH---TSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGG 232 (334)
Q Consensus 158 ~~~~~~~~~~~I~~~~--~~~~~vG~~g~i~~---S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~ 232 (334)
.+ ++++.++.+ +++++.|...+..| +.--+ +|..- + .|. -.+.++.+.+.|.
T Consensus 153 tD-----YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~e-----l--------nhg----~pVe~vl~lpsgs 209 (487)
T KOG0310|consen 153 TD-----YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVE-----L--------NHG----CPVESVLALPSGS 209 (487)
T ss_pred cc-----eeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEE-----e--------cCC----CceeeEEEcCCCC
Confidence 21 578888775 67788776543333 22222 33321 1 111 1245566677777
Q ss_pred EEEEEcCC--eEEEecCCCcceeeEeccccCCCeeeEEEEeecCC-eEEEEeCCCc--EEEEcCCCcCcEEcccCCCccc
Q 036387 233 LWLLVRGG--GLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD-EAWAAGGSGV--LLKTTNGGKTWIREKAADNIAA 307 (334)
Q Consensus 233 ~~~~~~~g--~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~--i~~S~DgG~tW~~~~~~~~~~~ 307 (334)
+++...+. .+|=..-||+. ......-...+.++.+..++ .++.+|.++. +|.++ +|+.+..- ..+.
T Consensus 210 ~iasAgGn~vkVWDl~~G~ql----l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t----~~Kvv~s~-~~~~ 280 (487)
T KOG0310|consen 210 LIASAGGNSVKVWDLTTGGQL----LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT----NYKVVHSW-KYPG 280 (487)
T ss_pred EEEEcCCCeEEEEEecCCcee----hhhhhcccceEEEEEeecCCceEeecccccceEEEEcc----ceEEEEee-eccc
Confidence 66544222 23434444441 10111111246677665544 4555666775 46544 48888763 3567
Q ss_pred ceeEEEEeeC-CeEEEEeCCeeEE
Q 036387 308 NLYSVKFINE-KKGFVLGNDGVLL 330 (334)
Q Consensus 308 ~l~~i~~~~~-~~~~a~G~~G~il 330 (334)
++.+++.+++ .++++...+|+++
T Consensus 281 pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 281 PVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ceeeEEecCCCceEEEecccceee
Confidence 8999988864 4566666888765
No 29
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=91.17 E-value=5.3 Score=40.30 Aligned_cols=96 Identities=13% Similarity=0.174 Sum_probs=61.9
Q ss_pred eEEEecCCCccceEE------ecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCCeEEE----EcC--CCcCe
Q 036387 82 ISLAATTGLYEQPAK------SEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLE----TKD--GGKTW 149 (334)
Q Consensus 82 ~~~~~g~~~~g~i~~------S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g~i~~----S~D--gG~TW 149 (334)
.+||.++. |.+|+ +.--|..|+.+..+. .|..|..-| ...+||+..+|.++. |.+ .|.+|
T Consensus 194 ~awAI~s~--Gd~y~RtGvs~~~P~GraW~~i~~~t----~L~qISagP--tg~VwAvt~nG~vf~R~GVsRqNp~GdsW 265 (705)
T KOG3669|consen 194 TAWAIRSS--GDLYLRTGVSVDRPCGRAWKVICPYT----DLSQISAGP--TGVVWAVTENGAVFYREGVSRQNPEGDSW 265 (705)
T ss_pred EEEEEecC--CcEEEeccccCCCCCCceeeecCCCC----ccceEeecC--cceEEEEeeCCcEEEEecccccCCCCchh
Confidence 35666665 55554 334488999987543 588888864 378999999887654 344 59999
Q ss_pred EeCcCCCCcccCcceeEEEEEEeCCeEEEEEcCC-EEEEEcC
Q 036387 150 APRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPA-ILLHTSD 190 (334)
Q Consensus 150 ~~~~~p~~~~~~~~~~~~~I~~~~~~~~~vG~~g-~i~~S~D 190 (334)
+.+..|...- .+.+|.+.-+.+|++...+ ..||..+
T Consensus 266 kdI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfrrgi 302 (705)
T KOG3669|consen 266 KDIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFRRGI 302 (705)
T ss_pred hhccCccccc-----ceEEEEeccceEEEEecCCcEEEEecc
Confidence 9888776421 2445555446677765433 4445443
No 30
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.10 E-value=21 Score=36.95 Aligned_cols=198 Identities=18% Similarity=0.311 Sum_probs=100.3
Q ss_pred eeeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEe-CCeEEEEEcC-----------
Q 036387 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK-GKEGWIVGKP----------- 182 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~-~~~~~~vG~~----------- 182 (334)
..+++|+|.|+..+-++|+|+.=.||-+.||+. -+.... + .+ .++.|+.. ++..|+.|..
T Consensus 13 hci~d~afkPDGsqL~lAAg~rlliyD~ndG~l-lqtLKg---H-KD---tVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGSRLLVYDTSDGTL-LQPLKG---H-KD---TVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred cchheeEECCCCceEEEecCCEEEEEeCCCccc-cccccc---c-cc---eEEEEEEccCCceeccCCCceeEEEecccc
Confidence 478999999965555667776666777788764 222211 1 11 46777764 4556655432
Q ss_pred -CEEEEEcCCCCCeEEeecCCC---C----CCCcccccccCcc-----ccceEeeeeEeecCCEEEEEc-CCeEEEecCC
Q 036387 183 -AILLHTSDAGESWERIPLSSQ---L----PGDMAFWQPHNRA-----VARRIQNMGWRADGGLWLLVR-GGGLFLSKGT 248 (334)
Q Consensus 183 -g~i~~S~DgG~TW~~~~~~~~---l----~g~~~~~~~~~~~-----~~~~i~~~~~~~~g~~~~~~~-~g~i~~S~D~ 248 (334)
|.+-+|. +..=+-+...+. + -.+..+|.+.... +..++..-.+..||..++.+. +|.|-.-.-.
T Consensus 85 EG~LkYSH--~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 85 EGILKYSH--NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred cceeeecc--CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence 3333332 223343333221 0 1234677654432 233555556678888887774 5555433333
Q ss_pred CcceeeEeccccCC-CeeeEEEEeecC-----CeEEEE-eCCCcE-EEEcCCCcCcEEcccCCCcccceeEEEEeeCCeE
Q 036387 249 GITEEFEEVPVQSR-GFGILDVGYRSQ-----DEAWAA-GGSGVL-LKTTNGGKTWIREKAADNIAANLYSVKFINEKKG 320 (334)
Q Consensus 249 G~tW~w~~~~~~~~-~~~~~~v~~~~~-----~~~~~~-G~~G~i-~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~ 320 (334)
|+. -..+.-|.. ..++.+|.+.+. +.++++ .....+ |++-|| +.+.......-.-..|.+..+|..
T Consensus 163 gEe--k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 163 GEE--KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred CCc--ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcE
Confidence 431 123333332 346888888652 234443 333333 667664 223211112223345666666766
Q ss_pred EEEe-CCee
Q 036387 321 FVLG-NDGV 328 (334)
Q Consensus 321 ~a~G-~~G~ 328 (334)
.++| .++.
T Consensus 237 ~LiGGsdk~ 245 (1081)
T KOG1538|consen 237 ILLGGSDKQ 245 (1081)
T ss_pred EEEccCCCc
Confidence 5554 4443
No 31
>PHA02790 Kelch-like protein; Provisional
Probab=90.83 E-value=19 Score=36.01 Aligned_cols=151 Identities=10% Similarity=0.122 Sum_probs=71.8
Q ss_pred CCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcC---CeEEEEcCCCcCeEeCcC-CCCcccCcceeEEEEEEeCCeE
Q 036387 101 LSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTR---QTLLETKDGGKTWAPRSI-PSAEEEDFNYRFNSISFKGKEG 176 (334)
Q Consensus 101 G~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~---g~i~~S~DgG~TW~~~~~-p~~~~~~~~~~~~~I~~~~~~~ 176 (334)
-.+|..+.....+... .+++.. + +.+|++|.. ..+.+-.-.-.+|+.+.. |.. . .-.++...++.+
T Consensus 296 ~~~W~~~~~m~~~r~~-~~~v~~--~-~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~----r--~~~~~~~~~g~I 365 (480)
T PHA02790 296 SNNWIPIPPMNSPRLY-ASGVPA--N-NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP----R--CNPAVASINNVI 365 (480)
T ss_pred CCEEEECCCCCchhhc-ceEEEE--C-CEEEEECCcCCCCceEEEECCCCeEEECCCCCCC----C--cccEEEEECCEE
Confidence 4679988643322222 233333 2 788998753 223333334557988752 221 1 112334457889
Q ss_pred EEEEcCC----EEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCCeEEEecCCCcce
Q 036387 177 WIVGKPA----ILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITE 252 (334)
Q Consensus 177 ~~vG~~g----~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i~~S~D~G~tW 252 (334)
|++|... .+.+-+=...+|+.++..+ .+ .+ ......-++.+|+.+....+|-- + -.
T Consensus 366 YviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~---r~------------~~~~~~~~~~IYv~GG~~e~ydp-~-~~-- 425 (480)
T PHA02790 366 YVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YP---HY------------KSCALVFGRRLFLVGRNAEFYCE-S-SN-- 425 (480)
T ss_pred EEecCcCCCCccEEEEeCCCCEEEeCCCCC-Cc---cc------------cceEEEECCEEEEECCceEEecC-C-CC--
Confidence 9886421 1222222345788875321 11 00 00111346788988743334422 2 22
Q ss_pred eeEeccccCCCeeeEEEEeecCCeEEEEeC
Q 036387 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGG 282 (334)
Q Consensus 253 ~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~ 282 (334)
+|+.++.......-.+++. -++.+|++|+
T Consensus 426 ~W~~~~~m~~~r~~~~~~v-~~~~IYviGG 454 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELII-VDNKLLLIGG 454 (480)
T ss_pred cEeEcCCCCCCccccEEEE-ECCEEEEECC
Confidence 4666542211111122322 2678999886
No 32
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.92 E-value=25 Score=36.05 Aligned_cols=192 Identities=12% Similarity=0.175 Sum_probs=102.5
Q ss_pred CcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCC-------eEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEeCCe
Q 036387 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ-------TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKE 175 (334)
Q Consensus 103 tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g-------~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~~~ 175 (334)
.|........+ ..-.++++.. +.+|++|... .+++-+--..+|.++..-... -...++..-++.
T Consensus 312 ~w~~~a~m~~~-r~~~~~~~~~---~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~-----R~~~~v~~l~g~ 382 (571)
T KOG4441|consen 312 EWSSLAPMPSP-RCRVGVAVLN---GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK-----RSDFGVAVLDGK 382 (571)
T ss_pred cEeecCCCCcc-cccccEEEEC---CEEEEEccccCCCcccceEEEecCCCCceeccCCccCc-----cccceeEEECCE
Confidence 68877643221 2345667763 5788887532 244444456679986422111 022245555788
Q ss_pred EEEEEcC-C-----EEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCC-------eE
Q 036387 176 GWIVGKP-A-----ILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGG-------GL 242 (334)
Q Consensus 176 ~~~vG~~-g-----~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g-------~i 242 (334)
+|++|.. | .+-+-+-....|+.+..- +.. +-...+..-++.+|++++.. .+
T Consensus 383 iYavGG~dg~~~l~svE~YDp~~~~W~~va~m---~~~-------------r~~~gv~~~~g~iYi~GG~~~~~~~l~sv 446 (571)
T KOG4441|consen 383 LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM---LTR-------------RSGHGVAVLGGKLYIIGGGDGSSNCLNSV 446 (571)
T ss_pred EEEEeccccccccccEEEecCCCCcccccCCC---Ccc-------------eeeeEEEEECCEEEEEcCcCCCccccceE
Confidence 9988643 2 355556666778877632 110 01111223468899887521 12
Q ss_pred EEecCCCcceeeEecc-ccCCCeeeEEEEeecCCeEEEEeCC-C-----cEEEEcCCCcCcEEcccCCCcccceeEEEEe
Q 036387 243 FLSKGTGITEEFEEVP-VQSRGFGILDVGYRSQDEAWAAGGS-G-----VLLKTTNGGKTWIREKAADNIAANLYSVKFI 315 (334)
Q Consensus 243 ~~S~D~G~tW~w~~~~-~~~~~~~~~~v~~~~~~~~~~~G~~-G-----~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~ 315 (334)
.+-...-.+ |+.++ .... ....+++.. .+.+|++|+. | .+-+..-..+.|..+... .....-..++..
T Consensus 447 e~YDP~t~~--W~~~~~M~~~-R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m-~~~rs~~g~~~~ 521 (571)
T KOG4441|consen 447 ECYDPETNT--WTLIAPMNTR-RSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM-TSPRSAVGVVVL 521 (571)
T ss_pred EEEcCCCCc--eeecCCcccc-cccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccC-ccccccccEEEE
Confidence 222223333 56653 2221 122344433 6789999874 2 245556667889999642 233444444544
Q ss_pred eCCeEEEEeC
Q 036387 316 NEKKGFVLGN 325 (334)
Q Consensus 316 ~~~~~~a~G~ 325 (334)
++++|++|.
T Consensus 522 -~~~ly~vGG 530 (571)
T KOG4441|consen 522 -GGKLYAVGG 530 (571)
T ss_pred -CCEEEEEec
Confidence 688999875
No 33
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=89.02 E-value=11 Score=38.05 Aligned_cols=139 Identities=14% Similarity=0.252 Sum_probs=79.6
Q ss_pred CeEEEEEcCCEEEEE------cCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCCeEEE---
Q 036387 174 KEGWIVGKPAILLHT------SDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFL--- 244 (334)
Q Consensus 174 ~~~~~vG~~g~i~~S------~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i~~--- 244 (334)
..+|+.+..|.+|+- .--|..|+.+...+.+ ..+...+-+.+|+++.+|.+++
T Consensus 193 ~~awAI~s~Gd~y~RtGvs~~~P~GraW~~i~~~t~L------------------~qISagPtg~VwAvt~nG~vf~R~G 254 (705)
T KOG3669|consen 193 DTAWAIRSSGDLYLRTGVSVDRPCGRAWKVICPYTDL------------------SQISAGPTGVVWAVTENGAVFYREG 254 (705)
T ss_pred eEEEEEecCCcEEEeccccCCCCCCceeeecCCCCcc------------------ceEeecCcceEEEEeeCCcEEEEec
Confidence 567888887766553 3458889998754311 1122234577899998887654
Q ss_pred -ecC--CCcceeeEeccccCCCeeeEEEEeecCCeEEEEeCCCcE-EEEcC-----CCcCcEEcccCC--C--cccceeE
Q 036387 245 -SKG--TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL-LKTTN-----GGKTWIREKAAD--N--IAANLYS 311 (334)
Q Consensus 245 -S~D--~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i-~~S~D-----gG~tW~~~~~~~--~--~~~~l~~ 311 (334)
|.+ .|.+| ..+..|.....+..+..- ...+|++..+|.+ ||..+ .|..|+...... . ....+.-
T Consensus 255 VsRqNp~GdsW--kdI~tP~~a~~~v~iSvG-t~t~Waldndg~lwfrrgii~~kpeg~h~~e~~~s~~~~v~tdq~isf 331 (705)
T KOG3669|consen 255 VSRQNPEGDSW--KDIVTPRQALEPVCISVG-TQTLWALDNDGNLWFRRGIISKKPEGDHDHEWQVSITDYVVTDQCISF 331 (705)
T ss_pred ccccCCCCchh--hhccCcccccceEEEEec-cceEEEEecCCcEEEEecccccCcccccccccccccccceEEecceee
Confidence 333 37754 666655432225555543 5678888877755 55543 334444433311 1 1123333
Q ss_pred EEEeeCCeEEEEeCCeeEEEEc
Q 036387 312 VKFINEKKGFVLGNDGVLLQYL 333 (334)
Q Consensus 312 i~~~~~~~~~a~G~~G~il~s~ 333 (334)
+...-+.++||++.++.|.+-+
T Consensus 332 ~SV~~ndqVfaisa~~~i~~R~ 353 (705)
T KOG3669|consen 332 QSVIHNDQVFAISAQAKIEVRE 353 (705)
T ss_pred EEEEecceEEEEecccceeeec
Confidence 3333467899999988665433
No 34
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.28 E-value=5.6 Score=40.18 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=59.6
Q ss_pred eecCCEEEEEcCCeEEEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeCCCcE-EEEcCCCcCcEEcccCCCcc
Q 036387 228 RADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL-LKTTNGGKTWIREKAADNIA 306 (334)
Q Consensus 228 ~~~g~~~~~~~~g~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i-~~S~DgG~tW~~~~~~~~~~ 306 (334)
+..+++|+.+..|-.+.+. .| |.|.....+.....+..+.-+..+..|+....|.. ++..+.|..--..+.. ..-
T Consensus 214 d~qg~LWVGTdqGv~~~e~-~G--~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~-l~~ 289 (671)
T COG3292 214 DVQGRLWVGTDQGVYLQEA-EG--WRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMH-LGV 289 (671)
T ss_pred HhcCcEEEEeccceEEEch-hh--ccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccC-Ccc
Confidence 4468899888665544444 44 56666433221113444443446788997777754 7888888765555442 122
Q ss_pred cceeEEEEeeCCeEEEEeCCeeE
Q 036387 307 ANLYSVKFINEKKGFVLGNDGVL 329 (334)
Q Consensus 307 ~~l~~i~~~~~~~~~a~G~~G~i 329 (334)
..+.++....++.+|+....|++
T Consensus 290 S~vnsL~~D~dGsLWv~t~~giv 312 (671)
T COG3292 290 STVNSLWLDTDGSLWVGTYGGIV 312 (671)
T ss_pred ccccceeeccCCCEeeeccCceE
Confidence 45667777778889977776644
No 35
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=88.17 E-value=5.9 Score=36.05 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=54.0
Q ss_pred eeeeEeecCCEEEEEcCCeE-EEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeC-CCcEEEEc-CCCcCcEEc
Q 036387 223 QNMGWRADGGLWLLVRGGGL-FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-SGVLLKTT-NGGKTWIRE 299 (334)
Q Consensus 223 ~~~~~~~~g~~~~~~~~g~i-~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~-~G~i~~S~-DgG~tW~~~ 299 (334)
.++.+..+|.++.....+.| |+..+. +..+....-...+.+....+...+|++|. ++.+|+-. +-|+-=...
T Consensus 188 tSlEvs~dG~ilTia~gssV~Fwdaks-----f~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 188 TSLEVSQDGRILTIAYGSSVKFWDAKS-----FGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred cceeeccCCCEEEEecCceeEEecccc-----ccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 34555677776655544443 333221 22221111112333333445667888866 45555442 223222222
Q ss_pred ccCCCcccceeEEEEeeCCeEEEEe-CCeeEEE
Q 036387 300 KAADNIAANLYSVKFINEKKGFVLG-NDGVLLQ 331 (334)
Q Consensus 300 ~~~~~~~~~l~~i~~~~~~~~~a~G-~~G~il~ 331 (334)
.. +-..++.+|.|+++|.+||.| ++|.|.-
T Consensus 263 nk--gh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 263 NK--GHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred cc--CCCCceEEEEECCCCceeeccCCCceEEE
Confidence 12 335789999999999999998 7787643
No 36
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=87.43 E-value=2 Score=40.45 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=32.7
Q ss_pred cceEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEE--EcCC--eEEEEcCCCcCeEeCc
Q 036387 92 EQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLL--GTRQ--TLLETKDGGKTWAPRS 153 (334)
Q Consensus 92 g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~av--G~~g--~i~~S~DgG~TW~~~~ 153 (334)
..|.+|+|.|++|+.-..-...+..-..|.=. ....++.+ .++| .+|.|.|-|.||++..
T Consensus 150 SlIiYS~d~g~~W~lskg~s~~gC~~psv~EW--e~gkLlM~~~c~~g~rrVYeS~DmG~tWtea~ 213 (310)
T PF13859_consen 150 SLIIYSTDDGKTWKLSKGMSPAGCSDPSVVEW--EDGKLLMMTACDDGRRRVYESGDMGTTWTEAL 213 (310)
T ss_dssp EEEEEESSTTSS-EE-S----TT-EEEEEEEE---TTEEEEEEE-TTS---EEEESSTTSS-EE-T
T ss_pred EEEEEECCCccceEeccccCCCCcceEEEEec--cCCeeEEEEecccceEEEEEEcccceehhhcc
Confidence 56899999999999743211112333334333 12444443 3456 5999999999999853
No 37
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=86.22 E-value=2.2 Score=26.07 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=27.9
Q ss_pred CcEEcccCCCcccceeEEEEeeCCeEEEEeCCeeEEEEcC
Q 036387 295 TWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334 (334)
Q Consensus 295 tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il~s~~ 334 (334)
.|++++. .+..|...+++.+|++..+|.|++.+|
T Consensus 2 ~W~~v~g------~l~~isvg~~~~vW~V~~~g~i~~r~g 35 (35)
T smart00706 2 SWTQVPG------ELVQVSVGPSDTVWAVNSDGNIYRRTG 35 (35)
T ss_pred CcEEcCC------CEEEEEECCCCeEEEEcCCCCEEEECC
Confidence 4888763 688888876689999999999998765
No 38
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=85.77 E-value=25 Score=31.26 Aligned_cols=188 Identities=10% Similarity=0.116 Sum_probs=96.4
Q ss_pred EEEEecCCCCEEEEEEc-CCeEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEe--CCeEEEEEcCCEEEEEcCCCCCe
Q 036387 119 DIAFVPDDLNHGFLLGT-RQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK--GKEGWIVGKPAILLHTSDAGESW 195 (334)
Q Consensus 119 ~I~~~p~d~~~~~avG~-~g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~--~~~~~~vG~~g~i~~S~DgG~TW 195 (334)
++.+.+ ..+.+|++.- .+.|++-...+..-+....+. ...+.+. ++.+|++...+..+. +-....+
T Consensus 4 gp~~d~-~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---------~~G~~~~~~~g~l~v~~~~~~~~~-d~~~g~~ 72 (246)
T PF08450_consen 4 GPVWDP-RDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---------PNGMAFDRPDGRLYVADSGGIAVV-DPDTGKV 72 (246)
T ss_dssp EEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEEESSS---------EEEEEEECTTSEEEEEETTCEEEE-ETTTTEE
T ss_pred ceEEEC-CCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---------CceEEEEccCCEEEEEEcCceEEE-ecCCCcE
Confidence 355654 2477777764 566777555444444333332 2345555 366777666555444 3234467
Q ss_pred EEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcC---------CeEEEecCCCcceeeEeccccCCCeee
Q 036387 196 ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG---------GGLFLSKGTGITEEFEEVPVQSRGFGI 266 (334)
Q Consensus 196 ~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~---------g~i~~S~D~G~tW~w~~~~~~~~~~~~ 266 (334)
+.+.... .+... ....+.+.+.++|.+|+.... |.+|+-..+|+ .+.+... ....
T Consensus 73 ~~~~~~~--~~~~~---------~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~---~~~~~~~--~~~p 136 (246)
T PF08450_consen 73 TVLADLP--DGGVP---------FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGK---VTVVADG--LGFP 136 (246)
T ss_dssp EEEEEEE--TTCSC---------TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSE---EEEEEEE--ESSE
T ss_pred EEEeecc--CCCcc---------cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCe---EEEEecC--cccc
Confidence 7765421 01101 124556778889999987642 56887766654 2222111 1124
Q ss_pred EEEEeecCC-eEEEEeC-CCcEEEEcC--CCcCcEEcc---cCCCcccceeEEEEeeCCeEEEEe-CCeeEEEEc
Q 036387 267 LDVGYRSQD-EAWAAGG-SGVLLKTTN--GGKTWIREK---AADNIAANLYSVKFINEKKGFVLG-NDGVLLQYL 333 (334)
Q Consensus 267 ~~v~~~~~~-~~~~~G~-~G~i~~S~D--gG~tW~~~~---~~~~~~~~l~~i~~~~~~~~~a~G-~~G~il~s~ 333 (334)
.++++.+++ .+|++-. .+.|++-.= .+..+.... .........-.+++..++++|++. ..|.|++.+
T Consensus 137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 678887766 4666533 455655432 233232211 111111235678887788888873 455566554
No 39
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=85.75 E-value=25 Score=31.25 Aligned_cols=205 Identities=13% Similarity=0.081 Sum_probs=107.4
Q ss_pred cceEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEE
Q 036387 92 EQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF 171 (334)
Q Consensus 92 g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~ 171 (334)
+.|++-...+..-+.+..+. ..++.+...+ +.+|++...+..+.-.+. ..++.+..... ........+++.+
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~-----~~G~~~~~~~-g~l~v~~~~~~~~~d~~~-g~~~~~~~~~~-~~~~~~~~ND~~v 93 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG-----PNGMAFDRPD-GRLYVADSGGIAVVDPDT-GKVTVLADLPD-GGVPFNRPNDVAV 93 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS-----EEEEEEECTT-SEEEEEETTCEEEEETTT-TEEEEEEEEET-TCSCTEEEEEEEE
T ss_pred CEEEEEECCCCeEEEEecCC-----CceEEEEccC-CEEEEEEcCceEEEecCC-CcEEEEeeccC-CCcccCCCceEEE
Confidence 45666555544444333322 5666776323 777777766655443233 35665543210 1112346888988
Q ss_pred eC-CeEEEEEcC---------CEEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCC-EEEEEc-C
Q 036387 172 KG-KEGWIVGKP---------AILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGG-LWLLVR-G 239 (334)
Q Consensus 172 ~~-~~~~~vG~~---------g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~-~~~~~~-~ 239 (334)
++ +++|+.... |.||+-+..| +.+.+... +. .-+.+.+.+++. +|++.. .
T Consensus 94 d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~~~~~~~~--~~---------------~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 94 DPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-KVTVVADG--LG---------------FPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp -TTS-EEEEEECCBCTTCGGSEEEEEEETTS-EEEEEEEE--ES---------------SEEEEEEETTSSEEEEEETTT
T ss_pred cCCCCEEEEecCCCccccccccceEEECCCC-eEEEEecC--cc---------------cccceEECCcchheeeccccc
Confidence 86 677775321 5688777663 34444321 10 123467788886 555543 4
Q ss_pred CeEEEecC--CCcceeeEec--cccCCCeeeEEEEeecCCeEEEEe-CCCcEEEEcCCCcCcEEcccCCCcccceeEEEE
Q 036387 240 GGLFLSKG--TGITEEFEEV--PVQSRGFGILDVGYRSQDEAWAAG-GSGVLLKTTNGGKTWIREKAADNIAANLYSVKF 314 (334)
Q Consensus 240 g~i~~S~D--~G~tW~w~~~--~~~~~~~~~~~v~~~~~~~~~~~G-~~G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~ 314 (334)
+.|++-.- .+..+.-..+ ..+......-++++..++.+|++. ..+.|++-.-.|+--..+..+ ......++|
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p---~~~~t~~~f 232 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELP---VPRPTNCAF 232 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S---SSSEEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC---CCCEEEEEE
Confidence 55665432 1221221221 122211124567777788999973 245565554448877888773 247888898
Q ss_pred e--eCCeEEEEeC
Q 036387 315 I--NEKKGFVLGN 325 (334)
Q Consensus 315 ~--~~~~~~a~G~ 325 (334)
. +.+++|++..
T Consensus 233 gg~~~~~L~vTta 245 (246)
T PF08450_consen 233 GGPDGKTLYVTTA 245 (246)
T ss_dssp ESTTSSEEEEEEB
T ss_pred ECCCCCEEEEEeC
Confidence 5 4577888753
No 40
>PHA03098 kelch-like protein; Provisional
Probab=85.47 E-value=43 Score=33.69 Aligned_cols=172 Identities=10% Similarity=0.106 Sum_probs=83.8
Q ss_pred CEEEEEEcC---C----eEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEeCCeEEEEEcC------CEEEEEcCCCCC
Q 036387 128 NHGFLLGTR---Q----TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKP------AILLHTSDAGES 194 (334)
Q Consensus 128 ~~~~avG~~---g----~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~~~~~~vG~~------g~i~~S~DgG~T 194 (334)
+.+|++|.. + .+++=+-.-.+|+....... .. ...++...++.+|++|.. ..+.+-+-...+
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---~R--~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY---PR--KNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc---cc--ccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 578887642 1 23333334567987642111 01 112333446788887642 134444445678
Q ss_pred eEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcC-------CeEEEecCCCcceeeEecc-ccCCCeee
Q 036387 195 WERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG-------GGLFLSKGTGITEEFEEVP-VQSRGFGI 266 (334)
Q Consensus 195 W~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~-------g~i~~S~D~G~tW~w~~~~-~~~~~~~~ 266 (334)
|+.++.. |... + .+ ....-++.+|+.++. ..+++-.-... +|+.+. .|......
T Consensus 370 W~~~~~l---p~~r-~--~~----------~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~ 431 (534)
T PHA03098 370 WREEPPL---IFPR-Y--NP----------CVVNVNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPISHYGG 431 (534)
T ss_pred eeeCCCc---CcCC-c--cc----------eEEEECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCccccCc
Confidence 9886532 2111 0 00 111235778887641 12333222223 456653 23211111
Q ss_pred EEEEeecCCeEEEEeCCC---------cEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeCC
Q 036387 267 LDVGYRSQDEAWAAGGSG---------VLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGND 326 (334)
Q Consensus 267 ~~v~~~~~~~~~~~G~~G---------~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~ 326 (334)
.+. ..++.+|++|+.. .+++-.-.-.+|+.+... +.+..-.++... ++++|++|..
T Consensus 432 -~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~r~~~~~~~~-~~~iyv~GG~ 496 (534)
T PHA03098 432 -CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL-NFPRINASLCIF-NNKIYVVGGD 496 (534)
T ss_pred -eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCC-CcccccceEEEE-CCEEEEEcCC
Confidence 222 2367899987631 255555556789998752 222222233333 6889998853
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=84.83 E-value=24 Score=30.28 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=56.0
Q ss_pred EeeeeEeecCCEEEEEc-CCeEEE-ecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeC-CCcEEE-EcCCCcCcE
Q 036387 222 IQNMGWRADGGLWLLVR-GGGLFL-SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-SGVLLK-TTNGGKTWI 297 (334)
Q Consensus 222 i~~~~~~~~g~~~~~~~-~g~i~~-S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~-~G~i~~-S~DgG~tW~ 297 (334)
+..+.+.+++.+++++. ++.+.. ..+.++. ..... .....+..+.+.+.+..++++. +|.++. ....++.-+
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGKC--LTTLR--GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCcEE--EEEec--cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce
Confidence 44455666666666665 555432 2222221 11111 1112467788776666777666 676533 333344333
Q ss_pred EcccCCCcccceeEEEEeeCC-eEEEEeCCeeEEEE
Q 036387 298 REKAADNIAANLYSVKFINEK-KGFVLGNDGVLLQY 332 (334)
Q Consensus 298 ~~~~~~~~~~~l~~i~~~~~~-~~~a~G~~G~il~s 332 (334)
.+.. ....+..+.+.+++ .+++++.+|.+..+
T Consensus 172 ~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 172 TLTG---HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204 (289)
T ss_pred eEec---CccccceEEECCCcCEEEEecCCCcEEEE
Confidence 3332 22478889998776 56666778876654
No 42
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=83.61 E-value=48 Score=33.03 Aligned_cols=70 Identities=21% Similarity=0.325 Sum_probs=40.2
Q ss_pred eeEeecCCEEEEEcC-------CeEEEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEE--------------EeCC
Q 036387 225 MGWRADGGLWLLVRG-------GGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA--------------AGGS 283 (334)
Q Consensus 225 ~~~~~~g~~~~~~~~-------g~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~--------------~G~~ 283 (334)
++|.+||.+++.+.. -.+|+-.++|. ...++++.. ...+.+. ++.+++ .|..
T Consensus 133 aG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~--~~e~LnlGp----athiv~~-dg~ivigRntydLP~WK~YkGGtr 205 (668)
T COG4946 133 AGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGI--KTEPLNLGP----ATHIVIK-DGIIVIGRNTYDLPHWKGYKGGTR 205 (668)
T ss_pred eccCCCCCEEEEeccCCCcccceeeeEEccCCc--eeeeccCCc----eeeEEEe-CCEEEEccCcccCcccccccCCcc
Confidence 345667776655432 23565555544 135555432 2233333 334433 2446
Q ss_pred CcEEEEcCCCcCcEEccc
Q 036387 284 GVLLKTTNGGKTWIREKA 301 (334)
Q Consensus 284 G~i~~S~DgG~tW~~~~~ 301 (334)
|.||.|+|+|++++++-.
T Consensus 206 GklWis~d~g~tFeK~vd 223 (668)
T COG4946 206 GKLWISSDGGKTFEKFVD 223 (668)
T ss_pred ceEEEEecCCcceeeeee
Confidence 899999999999999755
No 43
>PHA02713 hypothetical protein; Provisional
Probab=82.25 E-value=62 Score=33.05 Aligned_cols=152 Identities=9% Similarity=-0.029 Sum_probs=74.0
Q ss_pred CcCeEeCcC-CCCcccCcceeEEEEEEeCCeEEEEEcC-------CEEEEEcCCCCCeEEeecCCCCCCCcccccccCcc
Q 036387 146 GKTWAPRSI-PSAEEEDFNYRFNSISFKGKEGWIVGKP-------AILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRA 217 (334)
Q Consensus 146 G~TW~~~~~-p~~~~~~~~~~~~~I~~~~~~~~~vG~~-------g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~ 217 (334)
-.+|..+.. |... .-.++...++.+|++|.. ..+++-+=.-.+|+.++. ++.....
T Consensus 281 ~~~W~~l~~mp~~r------~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~---m~~~R~~------- 344 (557)
T PHA02713 281 TMEYSVISTIPNHI------INYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP---MIKNRCR------- 344 (557)
T ss_pred CCeEEECCCCCccc------cceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC---Ccchhhc-------
Confidence 346887642 2211 112344457889988652 124333334457887653 2211100
Q ss_pred ccceEeeeeEeecCCEEEEEcCC------eEEEecCCCcceeeEecc-ccCCCeeeEEEEeecCCeEEEEeCCC------
Q 036387 218 VARRIQNMGWRADGGLWLLVRGG------GLFLSKGTGITEEFEEVP-VQSRGFGILDVGYRSQDEAWAAGGSG------ 284 (334)
Q Consensus 218 ~~~~i~~~~~~~~g~~~~~~~~g------~i~~S~D~G~tW~w~~~~-~~~~~~~~~~v~~~~~~~~~~~G~~G------ 284 (334)
.....-++.+|+.|+.. .+.+-.-.-. +|..++ .+......-.+. -++.+|++|+..
T Consensus 345 ------~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~ 414 (557)
T PHA02713 345 ------FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYT 414 (557)
T ss_pred ------eeEEEECCEEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccc
Confidence 01113467888887532 1222222223 356653 232111122222 268899987631
Q ss_pred ------------------cEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeC
Q 036387 285 ------------------VLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325 (334)
Q Consensus 285 ------------------~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~ 325 (334)
.+++-.-.-++|+.++.. +......+++.. ++.+|++|.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~~~r~~~~~~~~-~~~IYv~GG 471 (557)
T PHA02713 415 SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-WTGTIRPGVVSH-KDDIYVVCD 471 (557)
T ss_pred cccccccccccccccccceEEEECCCCCeEeecCCC-CcccccCcEEEE-CCEEEEEeC
Confidence 233333344679988752 223333445444 679999985
No 44
>PHA03098 kelch-like protein; Provisional
Probab=80.30 E-value=68 Score=32.24 Aligned_cols=178 Identities=12% Similarity=0.146 Sum_probs=85.7
Q ss_pred eEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCC------eEEEEcCCCcCeEeCcC-CCCcccCcceeE
Q 036387 94 PAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ------TLLETKDGGKTWAPRSI-PSAEEEDFNYRF 166 (334)
Q Consensus 94 i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g------~i~~S~DgG~TW~~~~~-p~~~~~~~~~~~ 166 (334)
+++=+-...+|+.+.....+.. ..+++.. + +.+|++|... .+.+=.-...+|+.... |... ..
T Consensus 313 v~~yd~~~~~W~~~~~~~~~R~-~~~~~~~--~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-----~~- 382 (534)
T PHA03098 313 VVSYDTKTKSWNKVPELIYPRK-NPGVTVF--N-NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-----YN- 382 (534)
T ss_pred EEEEeCCCCeeeECCCCCcccc-cceEEEE--C-CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-----cc-
Confidence 3333334567988753222222 2334443 2 6788887532 23332334678997642 2211 11
Q ss_pred EEEEEeCCeEEEEEcC-------CEEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcC
Q 036387 167 NSISFKGKEGWIVGKP-------AILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRG 239 (334)
Q Consensus 167 ~~I~~~~~~~~~vG~~-------g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~ 239 (334)
.++...++.+|++|.. ..+++-+=.-.+|+.+... |... + .+ .....++.+|+.++.
T Consensus 383 ~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r-~--~~----------~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 383 PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---PISH-Y--GG----------CAIYHDGKIYVIGGI 446 (534)
T ss_pred ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC---Cccc-c--Cc----------eEEEECCEEEEECCc
Confidence 1233456788887641 2344434345679887532 2111 0 00 111235678877642
Q ss_pred C---------eEEEecCCCcceeeEeccc-cCCCeeeEEEEeecCCeEEEEeCC------CcEEEEcCCCcCcEEccc
Q 036387 240 G---------GLFLSKGTGITEEFEEVPV-QSRGFGILDVGYRSQDEAWAAGGS------GVLLKTTNGGKTWIREKA 301 (334)
Q Consensus 240 g---------~i~~S~D~G~tW~w~~~~~-~~~~~~~~~v~~~~~~~~~~~G~~------G~i~~S~DgG~tW~~~~~ 301 (334)
. .+++-...-. +|+.++. +........+.+ ++.+|++|+. ..++.-.-..+.|+.+..
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTN--KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred cCCCCCcccceEEEecCCCC--ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 1 1333333333 4566542 211111122222 6789998763 245555545668998876
No 45
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=80.17 E-value=39 Score=32.33 Aligned_cols=100 Identities=16% Similarity=0.219 Sum_probs=62.1
Q ss_pred eeeEeecCCEEEEEcC---CeEEEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeC-CCc--EEEEcCCCcCcE
Q 036387 224 NMGWRADGGLWLLVRG---GGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-SGV--LLKTTNGGKTWI 297 (334)
Q Consensus 224 ~~~~~~~g~~~~~~~~---g~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~-~G~--i~~S~DgG~tW~ 297 (334)
.+...|+..+.+++.. +-+|++.++- |-.+...- .-++..+.|..++..+|.|+ +|. ||+..-++.-|+
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge--~~~eltgH---KDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~ 143 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGE--FAGELTGH---KDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK 143 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCc--ceeEecCC---CCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE
Confidence 4455665555554422 2356666553 22222221 12578899988888888765 665 467777888888
Q ss_pred EcccCCCcccceeEEEEeeCCeEEEEe-CCeeEEEE
Q 036387 298 REKAADNIAANLYSVKFINEKKGFVLG-NDGVLLQY 332 (334)
Q Consensus 298 ~~~~~~~~~~~l~~i~~~~~~~~~a~G-~~G~il~s 332 (334)
.... -..+--+.+.+..+++++| .+|.+..+
T Consensus 144 ~~~e----~~dieWl~WHp~a~illAG~~DGsvWmw 175 (399)
T KOG0296|consen 144 LDQE----VEDIEWLKWHPRAHILLAGSTDGSVWMW 175 (399)
T ss_pred eecc----cCceEEEEecccccEEEeecCCCcEEEE
Confidence 8743 2467777777878887776 67766543
No 46
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=79.41 E-value=47 Score=31.36 Aligned_cols=142 Identities=13% Similarity=0.215 Sum_probs=76.9
Q ss_pred EEEEEEe-CCeEEEEEcCC--EEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecC-CEEEEEcC-C
Q 036387 166 FNSISFK-GKEGWIVGKPA--ILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADG-GLWLLVRG-G 240 (334)
Q Consensus 166 ~~~I~~~-~~~~~~vG~~g--~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g-~~~~~~~~-g 240 (334)
+++.++. +...++++.+. .-.++.++.+-|+...+..+ |.. .++.+.+.+.. +|+-...+ +
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~----------Hd~----~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE----------HDK----IVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh----------hCc----ceeEEeecCCCCceeEccCCCC
Confidence 4556665 46777776433 33344556666999876421 110 12234444433 44444433 2
Q ss_pred eEEEec-CCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeCCCcE--EEEcCCCcCc---EEcccCCCcccceeEEEE
Q 036387 241 GLFLSK-GTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVL--LKTTNGGKTW---IREKAADNIAANLYSVKF 314 (334)
Q Consensus 241 ~i~~S~-D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i--~~S~DgG~tW---~~~~~~~~~~~~l~~i~~ 314 (334)
....+. ++| +|.-+.+-+... .....|...+...-|++|..+.+ .-.-.+.+.| +.+.. +...++.++++
T Consensus 79 ayVw~~~~~~-~WkptlvLlRiN-rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikk--PirStv~sldW 154 (361)
T KOG1523|consen 79 AYVWTQPSGG-TWKPTLVLLRIN-RAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKK--PIRSTVTSLDW 154 (361)
T ss_pred ccccccCCCC-eeccceeEEEec-cceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCC--ccccceeeeec
Confidence 333444 444 443222222211 13456666666677888776532 1112345668 33444 55688999999
Q ss_pred eeCCeEEEEeC
Q 036387 315 INEKKGFVLGN 325 (334)
Q Consensus 315 ~~~~~~~a~G~ 325 (334)
.+++-+.++|.
T Consensus 155 hpnnVLlaaGs 165 (361)
T KOG1523|consen 155 HPNNVLLAAGS 165 (361)
T ss_pred cCCcceecccc
Confidence 99998999886
No 47
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=76.99 E-value=66 Score=30.24 Aligned_cols=76 Identities=13% Similarity=0.250 Sum_probs=37.7
Q ss_pred CCCCCcEEccc-CCCCCeeeEEEEEecCCCCEEEEEEcCC------------eEEEEcCCCcCeEeCcCCCCcccCccee
Q 036387 99 EALSAWERVYI-PVDPGVVLLDIAFVPDDLNHGFLLGTRQ------------TLLETKDGGKTWAPRSIPSAEEEDFNYR 165 (334)
Q Consensus 99 DgG~tW~~~~~-p~~~~~~l~~I~~~p~d~~~~~avG~~g------------~i~~S~DgG~TW~~~~~p~~~~~~~~~~ 165 (334)
+..++|+.+.. |..+.. ...++.. + +.+|++|... .+++=+=.-.+|+++..+.... .+.
T Consensus 38 ~~~~~W~~l~~~p~~~R~-~~~~~~~--~-~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~---~~~ 110 (346)
T TIGR03547 38 KPSKGWQKIADFPGGPRN-QAVAAAI--D-GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG---LLG 110 (346)
T ss_pred CCCCCceECCCCCCCCcc-cceEEEE--C-CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc---ccc
Confidence 45678998764 222222 2334444 2 6789887531 1222122356799875322110 011
Q ss_pred EEEEEEeCCeEEEEEc
Q 036387 166 FNSISFKGKEGWIVGK 181 (334)
Q Consensus 166 ~~~I~~~~~~~~~vG~ 181 (334)
...+...++.+|++|.
T Consensus 111 ~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 111 ASGFSLHNGQAYFTGG 126 (346)
T ss_pred eeEEEEeCCEEEEEcC
Confidence 1122235788998864
No 48
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=75.96 E-value=68 Score=29.88 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=18.5
Q ss_pred EEeCCeEEEEEcC------CEEEEEcCCCCCeEEee
Q 036387 170 SFKGKEGWIVGKP------AILLHTSDAGESWERIP 199 (334)
Q Consensus 170 ~~~~~~~~~vG~~------g~i~~S~DgG~TW~~~~ 199 (334)
...++.+|+.|.. ..+++-+=.-.+|+.++
T Consensus 120 ~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 155 (323)
T TIGR03548 120 CYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP 155 (323)
T ss_pred EEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECC
Confidence 3456788887642 24444444456899876
No 49
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=74.24 E-value=1.3e+02 Score=32.31 Aligned_cols=186 Identities=15% Similarity=0.084 Sum_probs=94.3
Q ss_pred eeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcC---CCCcccCcceeEEEEEEeCCeEEEEEcCCEE-EEEcCC
Q 036387 116 VLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSI---PSAEEEDFNYRFNSISFKGKEGWIVGKPAIL-LHTSDA 191 (334)
Q Consensus 116 ~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~---p~~~~~~~~~~~~~I~~~~~~~~~vG~~g~i-~~S~Dg 191 (334)
.++.|.++| +.+.++.+|.+|.|.+ |+.... |..-.. .+-.+.+|....+++....+.+.| .++-|.
T Consensus 15 G~t~i~~d~-~gefi~tcgsdg~ir~-------~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 15 GLTLICYDP-DGEFICTCGSDGDIRK-------WKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred ceEEEEEcC-CCCEEEEecCCCceEE-------eecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 478899988 5678888899998766 433322 211100 011344444433333333333322 223333
Q ss_pred CCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCC---eEEEecCCCcceeeEeccccCCCeeeEE
Q 036387 192 GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGG---GLFLSKGTGITEEFEEVPVQSRGFGILD 268 (334)
Q Consensus 192 G~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g---~i~~S~D~G~tW~w~~~~~~~~~~~~~~ 268 (334)
|..=+.+. .|- ..+..+.+..+|...+++.+. .+..+.|.++- ..-.+.. ..+..
T Consensus 86 ~~~~~iL~---------Rft--------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--~~lrgh~---apVl~ 143 (933)
T KOG1274|consen 86 GEEDTILA---------RFT--------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--KVLRGHD---APVLQ 143 (933)
T ss_pred CCccceee---------eee--------ccceEEEEecCCcEEEeecCceeEEEEeccccchh--eeecccC---Cceee
Confidence 32211111 010 123445666667666665443 34556666541 1111211 25788
Q ss_pred EEeecCCeEEEEe-CCCcE--EEEcCCC--cCcEEcccC-CCc-ccceeEEEEeeC-CeEEEEeCCeeEEEE
Q 036387 269 VGYRSQDEAWAAG-GSGVL--LKTTNGG--KTWIREKAA-DNI-AANLYSVKFINE-KKGFVLGNDGVLLQY 332 (334)
Q Consensus 269 v~~~~~~~~~~~G-~~G~i--~~S~DgG--~tW~~~~~~-~~~-~~~l~~i~~~~~-~~~~a~G~~G~il~s 332 (334)
+.|.+.+.++|+. .+|.| |-..|+- ++|..+... +.. .+.+..+++.++ +++.+.+-++.+..+
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy 215 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVY 215 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEE
Confidence 9998888877763 36654 4333432 355555432 112 345667788875 777777877765443
No 50
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=73.25 E-value=1e+02 Score=30.59 Aligned_cols=193 Identities=14% Similarity=0.152 Sum_probs=90.4
Q ss_pred eeeEEEEEecCCCCEEEEEEcCCe--EEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEeC-Ce-EEEEEcCCEEEEEcC
Q 036387 115 VVLLDIAFVPDDLNHGFLLGTRQT--LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KE-GWIVGKPAILLHTSD 190 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG~~g~--i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~-~~-~~~vG~~g~i~~S~D 190 (334)
..+++|.|.| ....++++|-++. ||+ .| |++=..+..-.. ..+.+....|.+ ++ ..+.+..-..|++=|
T Consensus 214 ~~I~sv~FHp-~~plllvaG~d~~lrifq-vD-Gk~N~~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 214 GGITSVQFHP-TAPLLLVAGLDGTLRIFQ-VD-GKVNPKLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CCceEEEecC-CCceEEEecCCCcEEEEE-ec-CccChhheeeee----ccCccceeeecCCCceEEEecccceEEEEee
Confidence 6799999998 5566677777775 443 66 443222211000 012344455554 33 444444444556554
Q ss_pred C-CCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCC-EEEEEcCCeEEEecCCCcceee-EeccccCCCeeeE
Q 036387 191 A-GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGG-LWLLVRGGGLFLSKGTGITEEF-EEVPVQSRGFGIL 267 (334)
Q Consensus 191 g-G~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~-~~~~~~~g~i~~S~D~G~tW~w-~~~~~~~~~~~~~ 267 (334)
= -..-+++..+. |- . ...+....+++++. +.+++..|.|+.-.---. +| ....++. .+.
T Consensus 287 le~ak~~k~~~~~---g~-----e-----~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~--eli~s~KieG---~v~ 348 (514)
T KOG2055|consen 287 LETAKVTKLKPPY---GV-----E-----EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK--ELITSFKIEG---VVS 348 (514)
T ss_pred ccccccccccCCC---Cc-----c-----cchhheeEecCCCCeEEEcccCceEEeehhhhh--hhhheeeecc---EEe
Confidence 3 11112221111 10 0 01122233455665 444566676653322111 11 1222332 355
Q ss_pred EEEeec-CCeEEEEeCCCcEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEe-CCeeEEEEc
Q 036387 268 DVGYRS-QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG-NDGVLLQYL 333 (334)
Q Consensus 268 ~v~~~~-~~~~~~~G~~G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G-~~G~il~s~ 333 (334)
++.|.. ...+|++|.+|.||+-.=+-.+=...-..+ ..-+=.+++.+.++..+|+| +.|++-.|+
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEec
Confidence 666664 457888888888775422111111111111 11233455555678899998 556654544
No 51
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=72.51 E-value=53 Score=31.06 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=53.1
Q ss_pred eeeEeecCCEEEEEcCCeEEEecCCCcce-eeEecc-cc-CCCeeeEEEEeec----CCeEEEEeCC---------CcEE
Q 036387 224 NMGWRADGGLWLLVRGGGLFLSKGTGITE-EFEEVP-VQ-SRGFGILDVGYRS----QDEAWAAGGS---------GVLL 287 (334)
Q Consensus 224 ~~~~~~~g~~~~~~~~g~i~~S~D~G~tW-~w~~~~-~~-~~~~~~~~v~~~~----~~~~~~~G~~---------G~i~ 287 (334)
.|++.+++.+|++...|.|++-...|..- ....++ +. ....+++++++.+ .+.+|++... -.|+
T Consensus 6 ~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~ 85 (331)
T PF07995_consen 6 SMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVV 85 (331)
T ss_dssp EEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEE
T ss_pred EEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeE
Confidence 47778899999988889888877555421 112221 11 1234788998876 3788887542 1344
Q ss_pred EEcCCC--cCcEE---ccc--CC--CcccceeEEEEeeCCeEEEE
Q 036387 288 KTTNGG--KTWIR---EKA--AD--NIAANLYSVKFINEKKGFVL 323 (334)
Q Consensus 288 ~S~DgG--~tW~~---~~~--~~--~~~~~l~~i~~~~~~~~~a~ 323 (334)
|-+... .+... +-. +. .....-..|.|.+++.+|+.
T Consensus 86 r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs 130 (331)
T PF07995_consen 86 RFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVS 130 (331)
T ss_dssp EEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEE
T ss_pred EEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEE
Confidence 443222 23332 211 11 11223456778777887764
No 52
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=70.21 E-value=40 Score=31.34 Aligned_cols=100 Identities=21% Similarity=0.243 Sum_probs=54.6
Q ss_pred eecCCEEEEEcCCeEEEecC--CCcceeeEeccccCCCeeeEEEEeecCCeEEEEeCCCcEEEEcCCCcC--cEEcccC-
Q 036387 228 RADGGLWLLVRGGGLFLSKG--TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKT--WIREKAA- 302 (334)
Q Consensus 228 ~~~g~~~~~~~~g~i~~S~D--~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~S~DgG~t--W~~~~~~- 302 (334)
.+||.+|......+..---| .|+ -...+++... .-..|...+++..|++...-.|.|- | +|+ -++...+
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGe---v~~ypLg~Ga-~Phgiv~gpdg~~Witd~~~aI~R~-d-pkt~evt~f~lp~ 143 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGE---VETYPLGSGA-SPHGIVVGPDGSAWITDTGLAIGRL-D-PKTLEVTRFPLPL 143 (353)
T ss_pred CCCCceEEecCccccceecCCCCCc---eEEEecCCCC-CCceEEECCCCCeeEecCcceeEEe-c-CcccceEEeeccc
Confidence 45676777654433322122 132 2334444322 2345555567777776433234333 2 222 2222221
Q ss_pred CCcccceeEEEEeeCCeEEEEeCCeeEEEEc
Q 036387 303 DNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333 (334)
Q Consensus 303 ~~~~~~l~~i~~~~~~~~~a~G~~G~il~s~ 333 (334)
+....++....|++.+++|.+|+.|..=|.+
T Consensus 144 ~~a~~nlet~vfD~~G~lWFt~q~G~yGrLd 174 (353)
T COG4257 144 EHADANLETAVFDPWGNLWFTGQIGAYGRLD 174 (353)
T ss_pred ccCCCcccceeeCCCccEEEeeccccceecC
Confidence 1345789999999999999999999765554
No 53
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=70.11 E-value=1.3e+02 Score=30.44 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=72.9
Q ss_pred eeEEEEEEeC-CeEEEEEcCCEEEEEc--CCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCC
Q 036387 164 YRFNSISFKG-KEGWIVGKPAILLHTS--DAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGG 240 (334)
Q Consensus 164 ~~~~~I~~~~-~~~~~vG~~g~i~~S~--DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g 240 (334)
..+.++.... ++++.+|....|-+.. |+|-+=+.+. ++.. +| + .++...++.+.++....
T Consensus 364 nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~---~lg~-----QP--------~-~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 364 NQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVV---KLGS-----QP--------K-GLAVLSDGGTAVVACIS 426 (603)
T ss_pred ceEEEEeecCCCcEEEEecCCeEEEEecccCccccccee---ecCC-----Cc--------e-eEEEcCCCCEEEEEecC
Confidence 3577777776 7888888776665542 2232222111 1111 11 1 23334555555554455
Q ss_pred eEEEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEE-eCCCcE-EEEcCCCcCcEEcccCCCcccceeEEEEeeCC
Q 036387 241 GLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA-GGSGVL-LKTTNGGKTWIREKAADNIAANLYSVKFINEK 318 (334)
Q Consensus 241 ~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~-G~~G~i-~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~ 318 (334)
.|..-.|.+.- ..+++. +...+++..+++.-+++ |.+|.+ .++-.|++.=+.... ..-.+.+..|+|++++
T Consensus 427 ~iv~l~~~~~~---~~~~~~---y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~-~~h~a~iT~vaySpd~ 499 (603)
T KOG0318|consen 427 DIVLLQDQTKV---SSIPIG---YESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL-LEHRAAITDVAYSPDG 499 (603)
T ss_pred cEEEEecCCcc---eeeccc---cccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee-ecccCCceEEEECCCC
Confidence 55555555431 223321 23345666666655555 456766 344455443222111 1234789999999999
Q ss_pred eEEEEeC
Q 036387 319 KGFVLGN 325 (334)
Q Consensus 319 ~~~a~G~ 325 (334)
..+|+|+
T Consensus 500 ~yla~~D 506 (603)
T KOG0318|consen 500 AYLAAGD 506 (603)
T ss_pred cEEEEec
Confidence 9999885
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=69.62 E-value=71 Score=27.28 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=88.4
Q ss_pred eeeEEEEEecCCCCEEEEEEcCCeEEE-EcCCCcCeEeCcCCCCcccCcceeEEEEEEeC-CeEEEEEc-CCEEEEEc-C
Q 036387 115 VVLLDIAFVPDDLNHGFLLGTRQTLLE-TKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGK-PAILLHTS-D 190 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG~~g~i~~-S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~-~~~~~vG~-~g~i~~S~-D 190 (334)
..+..+.+.| +.+.+++++.+|.+.. ..+.++.=.... . . ...+..+.+.+ +..++++. .+.|..-+ +
T Consensus 52 ~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~--~-~----~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 52 GPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLT--G-H----TSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred cceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEe--c-c----CCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 4566888886 3346666665666432 222221111111 0 0 01466777765 45555554 55443322 1
Q ss_pred CCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEc-CCeEEE-ecCCCcceeeEeccccCCCeeeEE
Q 036387 191 AGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR-GGGLFL-SKGTGITEEFEEVPVQSRGFGILD 268 (334)
Q Consensus 191 gG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~-~g~i~~-S~D~G~tW~w~~~~~~~~~~~~~~ 268 (334)
.++.-..+. .+. ..+..+.+.+++.+++++. ++.+.. ....++. ....... ...+..
T Consensus 124 ~~~~~~~~~-------------~~~----~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~--~~~i~~ 182 (289)
T cd00200 124 TGKCLTTLR-------------GHT----DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC--VATLTGH--TGEVNS 182 (289)
T ss_pred CcEEEEEec-------------cCC----CcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc--ceeEecC--ccccce
Confidence 122111111 010 1244566666666666655 555432 2222221 1111111 124667
Q ss_pred EEeecCC-eEEEEeCCCcEEE-EcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeC-CeeEEEE
Q 036387 269 VGYRSQD-EAWAAGGSGVLLK-TTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN-DGVLLQY 332 (334)
Q Consensus 269 v~~~~~~-~~~~~G~~G~i~~-S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~-~G~il~s 332 (334)
+.+.+++ .+++++.+|.+.. ....+ +.+..-......+..+.+.+++.+++++. +|.+..+
T Consensus 183 ~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~ 246 (289)
T cd00200 183 VAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246 (289)
T ss_pred EEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 7776665 5556565676532 22222 22222111234788899988788888876 7876544
No 55
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=69.08 E-value=1.4e+02 Score=30.62 Aligned_cols=137 Identities=13% Similarity=0.134 Sum_probs=74.0
Q ss_pred EEEEeCCeEEEEEcCC-------EEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCC
Q 036387 168 SISFKGKEGWIVGKPA-------ILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGG 240 (334)
Q Consensus 168 ~I~~~~~~~~~vG~~g-------~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g 240 (334)
.+.+.++.+|++|... .+++-+-...+|+.++.- .-.... . .++ .-+|.+|++++..
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M---~~~R~~-----------~-~v~-~l~g~iYavGG~d 390 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM---NTKRSD-----------F-GVA-VLDGKLYAVGGFD 390 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCc---cCcccc-----------c-eeE-EECCEEEEEeccc
Confidence 4555677889886422 445555556679986632 111100 0 111 2367888887532
Q ss_pred ------eEEEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeC-CC------cEEEEcCCCcCcEEcccCCCccc
Q 036387 241 ------GLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-SG------VLLKTTNGGKTWIREKAADNIAA 307 (334)
Q Consensus 241 ------~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~-~G------~i~~S~DgG~tW~~~~~~~~~~~ 307 (334)
.+-+-...... |+.+..-.....-.+++- -.+.+|++|+ ++ .+..-.=.-++|+.++.- ....
T Consensus 391 g~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M-~~~R 466 (571)
T KOG4441|consen 391 GEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM-NTRR 466 (571)
T ss_pred cccccccEEEecCCCCc--ccccCCCCcceeeeEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc-cccc
Confidence 23333334443 555542211112233332 2689999976 22 233334455789999873 3445
Q ss_pred ceeEEEEeeCCeEEEEeC
Q 036387 308 NLYSVKFINEKKGFVLGN 325 (334)
Q Consensus 308 ~l~~i~~~~~~~~~a~G~ 325 (334)
....++.. ++.+|++|.
T Consensus 467 ~~~g~a~~-~~~iYvvGG 483 (571)
T KOG4441|consen 467 SGFGVAVL-NGKIYVVGG 483 (571)
T ss_pred ccceEEEE-CCEEEEECC
Confidence 55566655 678999874
No 56
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=68.35 E-value=1.1e+02 Score=28.80 Aligned_cols=105 Identities=16% Similarity=0.223 Sum_probs=57.3
Q ss_pred eeEeecCCEEEEEcCC-e--E--EEecCCCcceeeEecccc-CCCeeeEEEEeecCCeEEEEeCCCc-E--EEEcCCCcC
Q 036387 225 MGWRADGGLWLLVRGG-G--L--FLSKGTGITEEFEEVPVQ-SRGFGILDVGYRSQDEAWAAGGSGV-L--LKTTNGGKT 295 (334)
Q Consensus 225 ~~~~~~g~~~~~~~~g-~--i--~~S~D~G~tW~w~~~~~~-~~~~~~~~v~~~~~~~~~~~G~~G~-i--~~S~DgG~t 295 (334)
.+++++|-+++++.+. . + .|+.|.|- ++...+. ........+.|.+++..++++.... + +-.-| |.-
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP---F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-G~~ 221 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGP---FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-GTV 221 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCC---ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-CcE
Confidence 4567778788777554 2 3 47888874 4554443 2222467888888777665554433 2 22223 331
Q ss_pred cEEcccCCCcccceeEEEEeeCCeEEEEeCC-eeEEEEc
Q 036387 296 WIREKAADNIAANLYSVKFINEKKGFVLGND-GVLLQYL 333 (334)
Q Consensus 296 W~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~-G~il~s~ 333 (334)
=+......+....--+..|.++++.+++|.+ |.|..+.
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 1111111011111135567789999988865 8887654
No 57
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=68.18 E-value=1.1e+02 Score=28.81 Aligned_cols=33 Identities=6% Similarity=0.106 Sum_probs=18.8
Q ss_pred CcCcEEcccCCCcccceeEEEEeeCCeEEEEeCC
Q 036387 293 GKTWIREKAADNIAANLYSVKFINEKKGFVLGND 326 (334)
Q Consensus 293 G~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~ 326 (334)
-++|+.+...........+++.. ++++|++|..
T Consensus 177 t~~W~~~~~~p~~~r~~~~~~~~-~~~iyv~GG~ 209 (346)
T TIGR03547 177 TNQWRNLGENPFLGTAGSAIVHK-GNKLLLINGE 209 (346)
T ss_pred CCceeECccCCCCcCCCceEEEE-CCEEEEEeee
Confidence 45799986521112233344443 6789998753
No 58
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=66.67 E-value=33 Score=32.31 Aligned_cols=111 Identities=11% Similarity=0.129 Sum_probs=68.7
Q ss_pred EeeeeEeecCCEEEEEcCCeEEEecCCCcceeeEe-ccccCCCeeeEEEEeecCCeEEEEeCCCcEEEEcCCCcCcEEcc
Q 036387 222 IQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEE-VPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREK 300 (334)
Q Consensus 222 i~~~~~~~~g~~~~~~~~g~i~~S~D~G~tW~w~~-~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~S~DgG~tW~~~~ 300 (334)
++.+.|.|...+++.+...+-.+-.|-.++- -.+ ...-..-..+.++.|.+.++.+++|.+--++|--| =+|.|-.-
T Consensus 175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~s-aKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYd-v~T~Qcfv 252 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRDNTVKLFDFSKTS-AKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYD-VNTYQCFV 252 (430)
T ss_pred ccceeecchhheEEeccCCCeEEEEecccHH-HHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEe-ccceeEee
Confidence 3445666666677666554444444544321 000 00111224678899999999999998766556555 45666654
Q ss_pred cCC---CcccceeEEEEeeCCeEEEEe-CCeeEEEEcC
Q 036387 301 AAD---NIAANLYSVKFINEKKGFVLG-NDGVLLQYLG 334 (334)
Q Consensus 301 ~~~---~~~~~l~~i~~~~~~~~~a~G-~~G~il~s~~ 334 (334)
... .-...+..|.+.+.+.+|+.+ .+|.|-.++|
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence 321 223578899999999999987 6777776665
No 59
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=66.35 E-value=43 Score=30.51 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=39.9
Q ss_pred eeeEEEEEecCCCCEEEEEEcCC-eEEEEcCCCcCeEeCcCCCCccc--CcceeEEEEEEeC-CeEEEEEcCCEEEE
Q 036387 115 VVLLDIAFVPDDLNHGFLLGTRQ-TLLETKDGGKTWAPRSIPSAEEE--DFNYRFNSISFKG-KEGWIVGKPAILLH 187 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG~~g-~i~~S~DgG~TW~~~~~p~~~~~--~~~~~~~~I~~~~-~~~~~vG~~g~i~~ 187 (334)
..+.+++++| ..+++|+..+.. .|+..+..|+--....+.....+ ..-.+-.+|+|++ +++|++++++.+|+
T Consensus 171 ~d~S~l~~~p-~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 171 RDLSGLSYDP-RTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp S---EEEEET-TTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred ccccceEEcC-CCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEE
Confidence 4577899988 467888887654 57777777775554444332110 0011356889985 89999999997765
No 60
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=66.03 E-value=1.3e+02 Score=28.88 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=19.1
Q ss_pred CCcCcEEcccCCCcccceeEEEEeeCCeEEEEeC
Q 036387 292 GGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325 (334)
Q Consensus 292 gG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~ 325 (334)
.-++|+.+.........-.++... ++++|++|.
T Consensus 197 ~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG 229 (376)
T PRK14131 197 STNQWKNAGESPFLGTAGSAVVIK-GNKLWLING 229 (376)
T ss_pred CCCeeeECCcCCCCCCCcceEEEE-CCEEEEEee
Confidence 346799886531112333455444 678999875
No 61
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=65.85 E-value=1.4e+02 Score=29.40 Aligned_cols=149 Identities=13% Similarity=0.234 Sum_probs=79.6
Q ss_pred eEEEEEEeC-CeEEEEEcCCEEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEE--cCCe
Q 036387 165 RFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLV--RGGG 241 (334)
Q Consensus 165 ~~~~I~~~~-~~~~~vG~~g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~--~~g~ 241 (334)
.+++..|++ +-+|..|...++++= |..-... +.+-+..|. ..|..+.|.. ++.|+++ +++.
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vki------wdlks~~-----~~a~Fpght----~~vk~i~FsE-NGY~Lat~add~~ 412 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKI------WDLKSQT-----NVAKFPGHT----GPVKAISFSE-NGYWLATAADDGS 412 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEE------EEcCCcc-----ccccCCCCC----CceeEEEecc-CceEEEEEecCCe
Confidence 467778886 556666765555442 3322111 111111222 1355666654 4455443 2332
Q ss_pred EEEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEE-eCCCcEEEEcCCCcCcEEcccCCCcc-cceeEEEEeeCCe
Q 036387 242 LFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA-GGSGVLLKTTNGGKTWIREKAADNIA-ANLYSVKFINEKK 319 (334)
Q Consensus 242 i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~-G~~G~i~~S~DgG~tW~~~~~~~~~~-~~l~~i~~~~~~~ 319 (334)
|. --|--+.-.+..+.++. .+.+.++.|+..+..+++ |.+=.||...-.-++|+.+..- ... ..-..+.|...-+
T Consensus 413 V~-lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~aq 489 (506)
T KOG0289|consen 413 VK-LWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHAQ 489 (506)
T ss_pred EE-EEEehhhcccceeeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh-hhcccccceeeecccce
Confidence 21 11111100123333333 235677888766665554 5556788888778899999762 122 2455778876667
Q ss_pred EEEEeCCeeEEEE
Q 036387 320 GFVLGNDGVLLQY 332 (334)
Q Consensus 320 ~~a~G~~G~il~s 332 (334)
.++.|..+.+||.
T Consensus 490 ~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 490 YLASTSMDAILRL 502 (506)
T ss_pred EEeeccchhheEE
Confidence 7788888887764
No 62
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=64.38 E-value=1.4e+02 Score=28.63 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=35.2
Q ss_pred eEEEEeecCCeEEEE-eC-------------------CCcEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeC
Q 036387 266 ILDVGYRSQDEAWAA-GG-------------------SGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325 (334)
Q Consensus 266 ~~~v~~~~~~~~~~~-G~-------------------~G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~ 325 (334)
...+.+.+++.+|++ |. .|.+|+-.-+|...+.+.. + ..+-+.++|.+.+++|++-+
T Consensus 126 ~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~--G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 126 LNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH--G-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec--C-cCCCccceECCCCCEEEEcc
Confidence 456666667777764 31 1456665544555666655 2 35667888888888887643
No 63
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=62.66 E-value=1e+02 Score=31.88 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=56.7
Q ss_pred eEeeeeEeecCCEEEEEc-CCe--EEEecCCCcceeeEec-cccCCCeeeEEEEeecCCeEEEEeCCCcEEEEcCCCcCc
Q 036387 221 RIQNMGWRADGGLWLLVR-GGG--LFLSKGTGITEEFEEV-PVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTW 296 (334)
Q Consensus 221 ~i~~~~~~~~g~~~~~~~-~g~--i~~S~D~G~tW~w~~~-~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~S~DgG~tW 296 (334)
.|.++++....+.++++. +|. ||--. ..|--+.+ ..+.. ..+-++++.+.+++|-+|.+|.|-.- | =.+=
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~---~~w~~~~vi~g~~d-rsIE~L~W~e~~RLFS~g~sg~i~Ew-D-l~~l 100 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLS---NNWFLEPVIHGPED-RSIESLAWAEGGRLFSSGLSGSITEW-D-LHTL 100 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccC---CCceeeEEEecCCC-CceeeEEEccCCeEEeecCCceEEEE-e-cccC
Confidence 466677765555555442 232 22111 13421221 22222 35677888778899999888876321 0 0111
Q ss_pred EEcccCCCcccceeEEEEeeCCeEEEEe-CCeeEE
Q 036387 297 IREKAADNIAANLYSVKFINEKKGFVLG-NDGVLL 330 (334)
Q Consensus 297 ~~~~~~~~~~~~l~~i~~~~~~~~~a~G-~~G~il 330 (334)
++.-..+.....+++|+..+.++..++| ++|+++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~ 135 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLY 135 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEE
Confidence 1111112345678888888888888887 888654
No 64
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=61.81 E-value=1.5e+02 Score=28.15 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=48.5
Q ss_pred cCCEEEEEcCCeEEE-ecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeCCCcEEE-EcCCCc-CcEEcccCCCcc
Q 036387 230 DGGLWLLVRGGGLFL-SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLK-TTNGGK-TWIREKAADNIA 306 (334)
Q Consensus 230 ~g~~~~~~~~g~i~~-S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~-S~DgG~-tW~~~~~~~~~~ 306 (334)
++.+|+...+|.++. ..+.|+. .|+........ ...... .++.+|+...+|.++. ..+.|+ .|+ ..... .
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~~-~W~~~~~~~~~--~ssp~i-~g~~l~~~~~~G~l~~~d~~tG~~~~~-~~~~~--~ 351 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGSE-LWKNDELKYRQ--LTAPAV-VGGYLVVGDFEGYLHWLSREDGSFVAR-LKTDG--S 351 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCcE-EEccccccCCc--cccCEE-ECCEEEEEeCCCEEEEEECCCCCEEEE-EEcCC--C
Confidence 466777776776643 3344542 34332221110 111111 2567777777787643 333344 453 33311 1
Q ss_pred cceeEEEEeeCCeEEEEeCCeeEEEE
Q 036387 307 ANLYSVKFINEKKGFVLGNDGVLLQY 332 (334)
Q Consensus 307 ~~l~~i~~~~~~~~~a~G~~G~il~s 332 (334)
....+..+. ++++|+++.+|.|+..
T Consensus 352 ~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 352 GIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCCEEE-CCEEEEEeCCceEEEe
Confidence 122333444 5789999999988753
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=61.78 E-value=1.4e+02 Score=27.79 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=60.4
Q ss_pred eEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEc---CC---eEEEE-cCCCcCeEeCcCCC--CcccCcce
Q 036387 94 PAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGT---RQ---TLLET-KDGGKTWAPRSIPS--AEEEDFNY 164 (334)
Q Consensus 94 i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~---~g---~i~~S-~DgG~TW~~~~~p~--~~~~~~~~ 164 (334)
|..=+-.+..|........ ..++++.+. +.+.++++|. .+ .-+.+ +-...+|+...... ..+.
T Consensus 18 lC~yd~~~~qW~~~g~~i~--G~V~~l~~~--~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg---- 89 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGNGIS--GTVTDLQWA--SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG---- 89 (281)
T ss_pred EEEEECCCCEeecCCCCce--EEEEEEEEe--cCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC----
Confidence 4444445789998765544 789999987 5688999885 12 22333 33577998775421 1111
Q ss_pred eEEEEEEe--C-CeEEEEEcC----CEEEEEcCCCCCeEEeec
Q 036387 165 RFNSISFK--G-KEGWIVGKP----AILLHTSDAGESWERIPL 200 (334)
Q Consensus 165 ~~~~I~~~--~-~~~~~vG~~----g~i~~S~DgG~TW~~~~~ 200 (334)
.+..+.+. + .+.|+.|.. ..|++- .|.+|+.+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 35555553 3 678877642 356665 3789999875
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=61.14 E-value=1.2e+02 Score=29.89 Aligned_cols=62 Identities=11% Similarity=0.190 Sum_probs=38.4
Q ss_pred eeEEEEeecCCeEEEEeCC-CcE--EEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEe-CCeeEE
Q 036387 265 GILDVGYRSQDEAWAAGGS-GVL--LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG-NDGVLL 330 (334)
Q Consensus 265 ~~~~v~~~~~~~~~~~G~~-G~i--~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G-~~G~il 330 (334)
.+.+.+|.+++.++..|.. |.+ |-...+ . ....-+ +-.+.+.+|.|..+|-+.+++ ++|.+.
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-~--~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~ 414 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-T--NVAKFP-GHTGPVKAISFSENGYWLATAADDGSVK 414 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCc-c--ccccCC-CCCCceeEEEeccCceEEEEEecCCeEE
Confidence 4677888888988888774 432 322221 1 111111 234789999999988877764 777444
No 67
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=60.94 E-value=1.6e+02 Score=28.23 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=30.7
Q ss_pred CCeEEEEeCCC------------cEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeCC
Q 036387 274 QDEAWAAGGSG------------VLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGND 326 (334)
Q Consensus 274 ~~~~~~~G~~G------------~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~ 326 (334)
++.+|++|... .+++-.-..++|+.+....+....-.+.....++++|++|..
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGV 148 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCC
Confidence 67899987642 244444456789998742111111122222147899999875
No 68
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=60.14 E-value=2.2e+02 Score=29.72 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=59.4
Q ss_pred eeeEeecCCEEEEEcCCeEEE-ecCCCcceeeEeccccCCCeeeEEEEe-ecCCeEEEEeCCCcEEEEcCCCcCcEEccc
Q 036387 224 NMGWRADGGLWLLVRGGGLFL-SKGTGITEEFEEVPVQSRGFGILDVGY-RSQDEAWAAGGSGVLLKTTNGGKTWIREKA 301 (334)
Q Consensus 224 ~~~~~~~g~~~~~~~~g~i~~-S~D~G~tW~w~~~~~~~~~~~~~~v~~-~~~~~~~~~G~~G~i~~S~DgG~tW~~~~~ 301 (334)
.+.+.++..+.-++++|.|.+ ..|++- -.+.. ....-++.+.. .+++.+.-+|.++.+-.= +.++-=|.+..
T Consensus 184 gL~vl~~~~flScsNDg~Ir~w~~~ge~---l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW-~~~e~~q~I~l 257 (745)
T KOG0301|consen 184 GLAVLDDSHFLSCSNDGSIRLWDLDGEV---LLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIW-KKDECVQVITL 257 (745)
T ss_pred eeEEecCCCeEeecCCceEEEEeccCce---eeeee--ccceEEEEEEecCCCCeEEEecCCceEEEe-ecCceEEEEec
Confidence 344555556666777776643 333321 11111 11123566663 345556667888876222 23355566665
Q ss_pred CCCcccceeEEEEeeCCeEEEEeCCeeEEEE
Q 036387 302 ADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332 (334)
Q Consensus 302 ~~~~~~~l~~i~~~~~~~~~a~G~~G~il~s 332 (334)
| ...++++.+..++.++..|.+|.+.-.
T Consensus 258 P---ttsiWsa~~L~NgDIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 258 P---TTSIWSAKVLLNGDIVVGGSDGRVRVF 285 (745)
T ss_pred C---ccceEEEEEeeCCCEEEeccCceEEEE
Confidence 3 358999999999999999999987643
No 69
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=58.30 E-value=12 Score=30.45 Aligned_cols=18 Identities=33% Similarity=0.726 Sum_probs=13.4
Q ss_pred EEEEcCCCcCeEeCcCCC
Q 036387 139 LLETKDGGKTWAPRSIPS 156 (334)
Q Consensus 139 i~~S~DgG~TW~~~~~p~ 156 (334)
+=.|.|+|+||+...+..
T Consensus 46 VEVS~DgG~tW~~A~l~~ 63 (131)
T PF03404_consen 46 VEVSTDGGKTWQEATLDG 63 (131)
T ss_dssp EEEESSTTSSEEE-EEES
T ss_pred EEEEeCCCCCcEEeEecc
Confidence 556999999999876533
No 70
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=56.66 E-value=32 Score=33.55 Aligned_cols=92 Identities=15% Similarity=0.230 Sum_probs=54.5
Q ss_pred eEeeeeEeecCCEEEEEcCCeEEEecCCCcceeeEecc-------ccCCCeeeEEEEeecCCeEEEEeCC---CcEEEEc
Q 036387 221 RIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVP-------VQSRGFGILDVGYRSQDEAWAAGGS---GVLLKTT 290 (334)
Q Consensus 221 ~i~~~~~~~~g~~~~~~~~g~i~~S~D~G~tW~w~~~~-------~~~~~~~~~~v~~~~~~~~~~~G~~---G~i~~S~ 290 (334)
++..+.|.|+|..+..+.. | .||.--.+. ...-..++++++|..++.+.+.|.- |.||=.+
T Consensus 263 RVs~VafHPsG~~L~Tasf-------D--~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR 333 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASF-------D--STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR 333 (459)
T ss_pred hheeeeecCCCceeeeccc-------c--cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecc
Confidence 4566788888876655422 2 244322221 1122347899999999988887652 5554333
Q ss_pred CCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeC
Q 036387 291 NGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325 (334)
Q Consensus 291 DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~ 325 (334)
- |. +.+-.. +-...+++|.|+++|.-+|.|.
T Consensus 334 t-gr--~im~L~-gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 334 T-GR--CIMFLA-GHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred c-Cc--EEEEec-ccccceeeEeECCCceEEeecC
Confidence 2 21 111111 2236799999999999998864
No 71
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=55.57 E-value=1.8e+02 Score=27.35 Aligned_cols=147 Identities=10% Similarity=0.107 Sum_probs=73.4
Q ss_pred EEEEEeC-CeEEEEEcCCEEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEee----cCCEEEEEcC--
Q 036387 167 NSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA----DGGLWLLVRG-- 239 (334)
Q Consensus 167 ~~I~~~~-~~~~~vG~~g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~----~g~~~~~~~~-- 239 (334)
++|++.+ +++|+.-..|.|++-+..|..-+.+....+.. ... ...+..+++.+ ++.+|++...
T Consensus 5 ~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~------~~~----~~gllgia~~p~f~~n~~lYv~~t~~~ 74 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVF------ADG----ERGLLGIAFHPDFASNGYLYVYYTNAD 74 (331)
T ss_dssp EEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTB------TST----TBSEEEEEE-TTCCCC-EEEEEEEEE-
T ss_pred eEEEEeCCCcEEEEeCCceEEEEeCCCcCcceeccccccc------ccc----cCCcccceeccccCCCCEEEEEEEccc
Confidence 5677775 67777767788888775555534443221110 000 11344455554 3567776542
Q ss_pred -------CeEEEecCC--Cccee-eEec--cccC---CCeeeEEEEeecCCeEEEE-eC-------------CCcEEEEc
Q 036387 240 -------GGLFLSKGT--GITEE-FEEV--PVQS---RGFGILDVGYRSQDEAWAA-GG-------------SGVLLKTT 290 (334)
Q Consensus 240 -------g~i~~S~D~--G~tW~-w~~~--~~~~---~~~~~~~v~~~~~~~~~~~-G~-------------~G~i~~S~ 290 (334)
..|.|-+.. ..+.. .+.+ ..+. ..+....+.|.+++.+|+. |. .|.|+|-.
T Consensus 75 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 75 EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRID 154 (331)
T ss_dssp TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE
T ss_pred CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEec
Confidence 245543322 22222 1221 1222 2234456888888898885 32 26787766
Q ss_pred CCCcCcEEcccC-----C-----CcccceeEEEEeeC-CeEEEE
Q 036387 291 NGGKTWIREKAA-----D-----NIAANLYSVKFINE-KKGFVL 323 (334)
Q Consensus 291 DgG~tW~~~~~~-----~-----~~~~~l~~i~~~~~-~~~~a~ 323 (334)
..|+.+..-+.. . ..-++.+.++|.+. +++|++
T Consensus 155 ~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~ 198 (331)
T PF07995_consen 155 PDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAA 198 (331)
T ss_dssp TTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEE
T ss_pred ccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEE
Confidence 666522211110 0 01256778899887 899975
No 72
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=55.17 E-value=1.7e+02 Score=28.02 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=47.1
Q ss_pred eeeEeecCCEEEEEc------------CC-eEEEecC---CCcceeeEeccccCCCeeeEEEEeecCCeEEEEeCCCcEE
Q 036387 224 NMGWRADGGLWLLVR------------GG-GLFLSKG---TGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLL 287 (334)
Q Consensus 224 ~~~~~~~g~~~~~~~------------~g-~i~~S~D---~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~ 287 (334)
.|.+.++|++|++.. .+ .|++-.| +|+-=+++...... ....++++.+++ +|++.. ..|+
T Consensus 18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l--~~p~Gi~~~~~G-lyV~~~-~~i~ 93 (367)
T TIGR02604 18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL--SMVTGLAVAVGG-VYVATP-PDIL 93 (367)
T ss_pred eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC--CCccceeEecCC-EEEeCC-CeEE
Confidence 356677888988752 12 5655444 35421112221111 123566665556 777543 4454
Q ss_pred EE--cCCCc----CcEEcccCCCc-----ccceeEEEEeeCCeEEEE
Q 036387 288 KT--TNGGK----TWIREKAADNI-----AANLYSVKFINEKKGFVL 323 (334)
Q Consensus 288 ~S--~DgG~----tW~~~~~~~~~-----~~~l~~i~~~~~~~~~a~ 323 (334)
+- +|+.. .-+.+-..-+. ......+.+.++|.+|++
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEe
Confidence 33 33211 33433321111 233667888888888874
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=54.30 E-value=1.6e+02 Score=27.83 Aligned_cols=117 Identities=22% Similarity=0.280 Sum_probs=64.1
Q ss_pred eeeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEeC-CeEEEEEcCCEEEEEcCCCC
Q 036387 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSDAGE 193 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~-~~~~~vG~~g~i~~S~DgG~ 193 (334)
..++++.|.|. +++++.|+.-.-++=-|--++=.+...-...+ ...+++|.|++ ++..++|..--++|-=|= +
T Consensus 173 devn~l~FHPr--e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd---~~~vrsiSfHPsGefllvgTdHp~~rlYdv-~ 246 (430)
T KOG0640|consen 173 DEVNDLDFHPR--ETILISGSRDNTVKLFDFSKTSAKRAFKVFQD---TEPVRSISFHPSGEFLLVGTDHPTLRLYDV-N 246 (430)
T ss_pred Ccccceeecch--hheEEeccCCCeEEEEecccHHHHHHHHHhhc---cceeeeEeecCCCceEEEecCCCceeEEec-c
Confidence 45778999985 67788776543344456444321111000001 12588999997 777788865444444442 4
Q ss_pred CeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCCeEEEecCC
Q 036387 194 SWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGT 248 (334)
Q Consensus 194 TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i~~S~D~ 248 (334)
|.|-.... .|.. .|. ..|..+.+++.+.+|+++...+-.+--||
T Consensus 247 T~Qcfvsa--nPd~-----qht----~ai~~V~Ys~t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 247 TYQCFVSA--NPDD-----QHT----GAITQVRYSSTGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred ceeEeeec--Cccc-----ccc----cceeEEEecCCccEEEEeccCCcEEeecc
Confidence 55654322 1211 111 24556777778889988755444444443
No 74
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=54.24 E-value=40 Score=20.13 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=20.0
Q ss_pred ccceeEEEEeeCCeEEE-EeCCeeEEEE
Q 036387 306 AANLYSVKFINEKKGFV-LGNDGVLLQY 332 (334)
Q Consensus 306 ~~~l~~i~~~~~~~~~a-~G~~G~il~s 332 (334)
...+++|++.++++.++ ++.+|.|..+
T Consensus 11 ~~~i~~i~~~~~~~~~~s~~~D~~i~vw 38 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLASGSSDGTIRVW 38 (39)
T ss_dssp SSSEEEEEEETTSSEEEEEETTSEEEEE
T ss_pred CCcEEEEEEecccccceeeCCCCEEEEE
Confidence 46899999998766655 5677887654
No 75
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=53.54 E-value=1e+02 Score=27.89 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=46.5
Q ss_pred eeeEEEEeec-CCeEEEEeCCCcEEEEc-CCCcCcEE--cccCCCcccceeEEEEee-CCeEEEEeCCeeEEEEc
Q 036387 264 FGILDVGYRS-QDEAWAAGGSGVLLKTT-NGGKTWIR--EKAADNIAANLYSVKFIN-EKKGFVLGNDGVLLQYL 333 (334)
Q Consensus 264 ~~~~~v~~~~-~~~~~~~G~~G~i~~S~-DgG~tW~~--~~~~~~~~~~l~~i~~~~-~~~~~a~G~~G~il~s~ 333 (334)
..+.+|.|++ .+++|+++..|.||.=. .-|.--.. -..........+.+.|.+ -.++-++++.|.=||..
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~~GqNlR~n 101 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSNTGQNLRLN 101 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEccCCcEEEEC
Confidence 3688999987 57899999999987532 23332222 111112334577888865 56899999999888865
No 76
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.81 E-value=1.9e+02 Score=26.46 Aligned_cols=51 Identities=16% Similarity=0.403 Sum_probs=31.2
Q ss_pred CcEEcccCCCCCeeeEEEEEecCCCCEEEEEE-cCCe--EEEEcCCCcCeEeCcC
Q 036387 103 AWERVYIPVDPGVVLLDIAFVPDDLNHGFLLG-TRQT--LLETKDGGKTWAPRSI 154 (334)
Q Consensus 103 tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG-~~g~--i~~S~DgG~TW~~~~~ 154 (334)
.|++...-......+++|++.|.+-.-.+|++ ++|. ||.-++.| -|.....
T Consensus 91 ~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki 144 (299)
T KOG1332|consen 91 RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKI 144 (299)
T ss_pred chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-Cccchhh
Confidence 89887654444478999999986545556665 3564 44433332 2765443
No 77
>PTZ00334 trans-sialidase; Provisional
Probab=51.29 E-value=39 Score=35.89 Aligned_cols=57 Identities=11% Similarity=0.104 Sum_probs=32.4
Q ss_pred eEEEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEE--eCCC--cEEEEcCCCcCcEEc
Q 036387 241 GLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAA--GGSG--VLLKTTNGGKTWIRE 299 (334)
Q Consensus 241 ~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~--G~~G--~i~~S~DgG~tW~~~ 299 (334)
-|.+|+|+|. |.+.+--.+..-.. -.|.--.++.++++ -.+| .+|.|.|-|+||...
T Consensus 289 lIiYS~d~g~-W~ls~g~s~~gC~~-P~I~EWe~gkLlM~t~C~dG~RrVYES~DmG~tWtEA 349 (780)
T PTZ00334 289 LIIYSSATES-GNLSKGMSADGCSD-PSVVEWKEGKLMMMTACDDGRRRVYESGDKGDSWTEA 349 (780)
T ss_pred EEEEecCCCC-eEEcCCCCCCCCCC-CEEEEEcCCeEEEEEEeCCCCEEEEEECCCCCChhhC
Confidence 3677889885 87765322221000 11221223555443 2244 599999999999864
No 78
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=51.14 E-value=2.1e+02 Score=26.60 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=29.4
Q ss_pred CCeEEEEeCC------CcEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeCC
Q 036387 274 QDEAWAAGGS------GVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGND 326 (334)
Q Consensus 274 ~~~~~~~G~~------G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~ 326 (334)
++.+|++|.. ..+++-.=.-++|+.+..-.........++ .-++++|++|..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~-~~~~~iYv~GG~ 180 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCV-KLQNELYVFGGG 180 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEE-EECCEEEEEcCC
Confidence 6789998763 234444334467999874111122222333 346789998753
No 79
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=50.77 E-value=2.3e+02 Score=26.99 Aligned_cols=50 Identities=16% Similarity=0.387 Sum_probs=33.1
Q ss_pred CCeEEEEeCCCcEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCe-EEEEeCCeeEEEE
Q 036387 274 QDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKK-GFVLGNDGVLLQY 332 (334)
Q Consensus 274 ~~~~~~~G~~G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~-~~a~G~~G~il~s 332 (334)
.+.+|+....|.+.+|.-.|+ .....+.....++.|. +|++|++|+++..
T Consensus 414 sntv~imn~qGQvVrsfsSGk---------REgGdFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 414 SNTVYIMNMQGQVVRSFSSGK---------REGGDFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred CCeEEEEeccceEEeeeccCC---------ccCCceEEEEecCCCcEEEEEccCcEEEEE
Confidence 456666666777878776665 1234566555566555 6889999998753
No 80
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.18 E-value=89 Score=30.35 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=55.9
Q ss_pred eEeeeeEeecCCEEEE-EcCCeEEEecCCCcceeeEeccccCCCeeeEEEEeecCC---eEEEEe--CCCcEEEEcCCCc
Q 036387 221 RIQNMGWRADGGLWLL-VRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQD---EAWAAG--GSGVLLKTTNGGK 294 (334)
Q Consensus 221 ~i~~~~~~~~g~~~~~-~~~g~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~---~~~~~G--~~G~i~~S~DgG~ 294 (334)
.|..+.|++|+.+++. +.+....++.+.|..|+|... .. ..+.+-...|..++ .++++. ..+...+..| ..
T Consensus 188 eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~-~~-k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~-~~ 264 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTP-FS-KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD-IS 264 (398)
T ss_pred ccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCC-cc-cchhhhhceecccCCCceEEEEEecCCCCceeEEE-ee
Confidence 4667888999875543 334445556666665544331 11 11233344554444 333332 2222223333 33
Q ss_pred CcEEc-----ccCCCcccceeEEEEeeCCeEEEEe-CCeeEEE
Q 036387 295 TWIRE-----KAADNIAANLYSVKFINEKKGFVLG-NDGVLLQ 331 (334)
Q Consensus 295 tW~~~-----~~~~~~~~~l~~i~~~~~~~~~a~G-~~G~il~ 331 (334)
.|..- .........+.+++..++|++.|+| .+|.+..
T Consensus 265 ~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 265 LWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred eeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 45541 1111123568888888899999886 6665543
No 81
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=47.96 E-value=63 Score=30.49 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=14.6
Q ss_pred EEEEcCCCcCeEeCcCC
Q 036387 139 LLETKDGGKTWAPRSIP 155 (334)
Q Consensus 139 i~~S~DgG~TW~~~~~p 155 (334)
+-.|.|||+||++..+.
T Consensus 241 VEvS~DgG~tW~~A~l~ 257 (317)
T cd02110 241 VEVSLDGGRTWQEARLE 257 (317)
T ss_pred EEEEeCCCCcceEeEcc
Confidence 67799999999998763
No 82
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=45.86 E-value=2.5e+02 Score=26.04 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=62.0
Q ss_pred CCCCCCCCCCCCCCCcccccceeeeccccccceeEEEecCCCccceEEecCCCCCcEEcccCC--CCCeeeEEEEEecCC
Q 036387 49 SSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPV--DPGVVLLDIAFVPDD 126 (334)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~g~~~~g~i~~S~DgG~tW~~~~~p~--~~~~~l~~I~~~p~d 126 (334)
..++...+.. .........++.....++.|..-..+.. ...+..=+-..++|..+.... ....++..+.+...|
T Consensus 25 ~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~-~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d 100 (281)
T PF12768_consen 25 NSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGTN-SSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISND 100 (281)
T ss_pred CCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCCC-ceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccC
Confidence 4466655444 5556677777666666677765555422 234444444567998776421 122567777776667
Q ss_pred CCEEEEEEc--CC-eEEEEcCCCcCeEeCcCCC
Q 036387 127 LNHGFLLGT--RQ-TLLETKDGGKTWAPRSIPS 156 (334)
Q Consensus 127 ~~~~~avG~--~g-~i~~S~DgG~TW~~~~~p~ 156 (334)
...+|++|. .| ..+..-| |.+|+.+..+.
T Consensus 101 ~~~~~~aG~~~~g~~~l~~~d-Gs~W~~i~~~~ 132 (281)
T PF12768_consen 101 GSNFWVAGRSANGSTFLMKYD-GSSWSSIGSDI 132 (281)
T ss_pred CceEEEeceecCCCceEEEEc-CCceEeccccc
Confidence 788998875 22 2333346 67899987633
No 83
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=45.62 E-value=2.8e+02 Score=26.54 Aligned_cols=95 Identities=13% Similarity=0.166 Sum_probs=48.3
Q ss_pred cCCEEEEEcCCeEEE-ecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeCCCcEEE-EcCCCcC-cEEcccCCCcc
Q 036387 230 DGGLWLLVRGGGLFL-SKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLK-TTNGGKT-WIREKAADNIA 306 (334)
Q Consensus 230 ~g~~~~~~~~g~i~~-S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~-S~DgG~t-W~~~~~~~~~~ 306 (334)
++.+|+.+.++.++. ....|+. .|+....... ....... .++.+|+...+|.++. ..+.|+. |+. ... ..
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~--~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~~~~~~-~~~--~~ 366 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVE-LWSQSDLLHR--LLTAPVL-YNGYLVVGDSEGYLHWINREDGRFVAQQ-KVD--SS 366 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcE-EEcccccCCC--cccCCEE-ECCEEEEEeCCCEEEEEECCCCCEEEEE-EcC--CC
Confidence 566777777776643 3333432 3433211110 0111111 2677888777787643 4445554 544 221 01
Q ss_pred cceeEEEEeeCCeEEEEeCCeeEEEE
Q 036387 307 ANLYSVKFINEKKGFVLGNDGVLLQY 332 (334)
Q Consensus 307 ~~l~~i~~~~~~~~~a~G~~G~il~s 332 (334)
....+..+ .++++|+.+.+|.|+..
T Consensus 367 ~~~s~P~~-~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 367 GFLSEPVV-ADDKLLIQARDGTVYAI 391 (394)
T ss_pred cceeCCEE-ECCEEEEEeCCceEEEE
Confidence 11223333 36799999999988753
No 84
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=44.87 E-value=2.2e+02 Score=26.85 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=47.3
Q ss_pred cCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEc-CCe-EEEEcCCCc---CeE--eCcCCCCcccCcceeEEEEE
Q 036387 98 EEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGT-RQT-LLETKDGGK---TWA--PRSIPSAEEEDFNYRFNSIS 170 (334)
Q Consensus 98 ~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~-~g~-i~~S~DgG~---TW~--~~~~p~~~~~~~~~~~~~I~ 170 (334)
+++-...+.+.+|.. ...++|++..+ +..+|+|. .|. -.+..|.+. +++ --..... ..+.-|.++.|.
T Consensus 184 ~n~~te~k~~~SpLk--~Q~R~va~f~d--~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLK--WQTRCVACFQD--KDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-VNDDVYAVNSIA 258 (347)
T ss_pred CCCcchhhhhcCccc--ceeeEEEEEec--CCceEeeeecceEEEEecCCCCccCceeEEEeccCCC-CCCceEEecceE
Confidence 344455777777766 77899998864 55667775 554 345566552 221 1111111 111246788899
Q ss_pred EeCCe--EEEEEcCCEE
Q 036387 171 FKGKE--GWIVGKPAIL 185 (334)
Q Consensus 171 ~~~~~--~~~vG~~g~i 185 (334)
|++.+ +.-+|..|.+
T Consensus 259 FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTF 275 (347)
T ss_pred eecccceEEEecCCceE
Confidence 99844 4445666643
No 85
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=44.66 E-value=3.2e+02 Score=26.97 Aligned_cols=105 Identities=13% Similarity=0.242 Sum_probs=60.1
Q ss_pred eEeeeeEeecCCEEEEEcCCe---EEEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeC-CCcEEEE-cCCCcC
Q 036387 221 RIQNMGWRADGGLWLLVRGGG---LFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-SGVLLKT-TNGGKT 295 (334)
Q Consensus 221 ~i~~~~~~~~g~~~~~~~~g~---i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~-~G~i~~S-~DgG~t 295 (334)
.+..+.|.+++...+.+.... ||...+.+.. -..+. .-...+++++|.+.++.++.|. ++.+..- ...|+.
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~--~~~l~--gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN--LKTLK--GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC 280 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccCCCeE--EEEec--CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE
Confidence 456677888887666554333 3434344432 12111 1122578999988777777654 5655222 222444
Q ss_pred cEEcccCCCcccceeEEEEeeCCeEEEEeC-CeeEEEE
Q 036387 296 WIREKAADNIAANLYSVKFINEKKGFVLGN-DGVLLQY 332 (334)
Q Consensus 296 W~~~~~~~~~~~~l~~i~~~~~~~~~a~G~-~G~il~s 332 (334)
=+.+.. -...+.+++|..+++.++++. +|.|.-+
T Consensus 281 ~~~l~~---hs~~is~~~f~~d~~~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 281 VRKLKG---HSDGISGLAFSPDGNLLVSASYDGTIRVW 315 (456)
T ss_pred EEeeec---cCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence 444433 235788999988888777764 7766544
No 86
>PLN02153 epithiospecifier protein
Probab=44.43 E-value=2.7e+02 Score=26.05 Aligned_cols=52 Identities=13% Similarity=0.303 Sum_probs=29.3
Q ss_pred CCeEEEEeCC--------------CcEEEEcCCCcCcEEcccC--CCcccceeEEEEeeCCeEEEEeCC
Q 036387 274 QDEAWAAGGS--------------GVLLKTTNGGKTWIREKAA--DNIAANLYSVKFINEKKGFVLGND 326 (334)
Q Consensus 274 ~~~~~~~G~~--------------G~i~~S~DgG~tW~~~~~~--~~~~~~l~~i~~~~~~~~~a~G~~ 326 (334)
++++|++|.. ..++.-.-.-.+|+.+... .+......++... ++.+|++|..
T Consensus 193 ~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~-~~~iyv~GG~ 260 (341)
T PLN02153 193 QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV-GKYIIIFGGE 260 (341)
T ss_pred CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE-CCEEEEECcc
Confidence 5678887542 1243333345679998641 1223334444444 5789998874
No 87
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=42.44 E-value=3.4e+02 Score=28.84 Aligned_cols=101 Identities=13% Similarity=0.184 Sum_probs=56.5
Q ss_pred ceEeeeeEeecCCEEEEEc-CCeE--EEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEE-EeCCCcE-EEEcCCCc
Q 036387 220 RRIQNMGWRADGGLWLLVR-GGGL--FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWA-AGGSGVL-LKTTNGGK 294 (334)
Q Consensus 220 ~~i~~~~~~~~g~~~~~~~-~g~i--~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~-~G~~G~i-~~S~DgG~ 294 (334)
.++..+.+++||.+++++. +|.| |-+.- |- =+....-+. .++.++.|...+..++ ...+|.+ ..=--.+.
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gf--C~vTFteHt--s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GF--CFVTFTEHT--SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccC-ce--EEEEeccCC--CceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 3567788889998887763 3433 22221 11 011111122 2567777765555444 4567765 11122456
Q ss_pred CcEEcccCCCcccceeEEEEeeCCeEEEEeCCe
Q 036387 295 TWIREKAADNIAANLYSVKFINEKKGFVLGNDG 327 (334)
Q Consensus 295 tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G 327 (334)
+.+....| .+..+..++..+.|.++.+|..-
T Consensus 426 NfRTft~P--~p~QfscvavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 426 NFRTFTSP--EPIQFSCVAVDPSGELVCAGAQD 456 (893)
T ss_pred eeeeecCC--CceeeeEEEEcCCCCEEEeeccc
Confidence 66766663 45667777777778888777543
No 88
>COG4692 Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism]
Probab=42.08 E-value=77 Score=29.86 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=32.5
Q ss_pred cceEEecCCCCCcEEcccCCCCCeeeEEEEEecCCC-CEEEEE----EcCCeEE--EEcCCCcCeEeCc
Q 036387 92 EQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDL-NHGFLL----GTRQTLL--ETKDGGKTWAPRS 153 (334)
Q Consensus 92 g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~-~~~~av----G~~g~i~--~S~DgG~TW~~~~ 153 (334)
..+-+|.|.|++|+.-..... .-.+...|.+. .+-|++ -..+.++ .+.|+|.+|....
T Consensus 178 a~v~~s~d~gk~wr~~~ln~s----~g~v~l~p~~~~~t~y~al~~~~q~~~~~~~el~~~~r~~~~~Q 242 (381)
T COG4692 178 AAVGPSLDLGKSWRLKDLNTS----DGCVHLSPYHEGDTQYAALFRRRQADNVYRCELLDGGRTWSQPQ 242 (381)
T ss_pred cccccccccCceeeecccccc----CccEecChhhcccccchhhhhhhhcCCeeeeeeccCcccccCcC
Confidence 456779999999987643322 11222221100 112222 1346678 6899999998764
No 89
>PTZ00334 trans-sialidase; Provisional
Probab=41.97 E-value=60 Score=34.53 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=33.6
Q ss_pred cceEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEE--EcCC--eEEEEcCCCcCeEeCc
Q 036387 92 EQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLL--GTRQ--TLLETKDGGKTWAPRS 153 (334)
Q Consensus 92 g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~av--G~~g--~i~~S~DgG~TW~~~~ 153 (334)
..|++|+|.|. |..-..-...+..-..|.=. +...++.+ .++| .+|.|.|-|.||++..
T Consensus 288 slIiYS~d~g~-W~ls~g~s~~gC~~P~I~EW--e~gkLlM~t~C~dG~RrVYES~DmG~tWtEAl 350 (780)
T PTZ00334 288 SLIIYSSATES-GNLSKGMSADGCSDPSVVEW--KEGKLMMMTACDDGRRRVYESGDKGDSWTEAL 350 (780)
T ss_pred EEEEEecCCCC-eEEcCCCCCCCCCCCEEEEE--cCCeEEEEEEeCCCCEEEEEECCCCCChhhCC
Confidence 46888999885 97533111111222233333 22344332 3455 4999999999999753
No 90
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=40.75 E-value=37 Score=32.08 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.5
Q ss_pred cceEEecCCCCCcEEcc
Q 036387 92 EQPAKSEEALSAWERVY 108 (334)
Q Consensus 92 g~i~~S~DgG~tW~~~~ 108 (334)
..|++|+|+|++|+.+.
T Consensus 129 S~i~~S~D~G~tW~~~~ 145 (316)
T PF13810_consen 129 SGIAYSDDNGETWTVVP 145 (316)
T ss_pred eEEEEeCCCCCCceeCC
Confidence 56999999999999886
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=40.11 E-value=3.2e+02 Score=25.70 Aligned_cols=189 Identities=14% Similarity=0.149 Sum_probs=93.7
Q ss_pred CeeeEEEEEecCCCCEEEEEEcCCeEEEEcC--CCcCeEeCcCCCCcccCcceeEEEEEEeC-CeEEEEEcCCEEEEEcC
Q 036387 114 GVVLLDIAFVPDDLNHGFLLGTRQTLLETKD--GGKTWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTSD 190 (334)
Q Consensus 114 ~~~l~~I~~~p~d~~~~~avG~~g~i~~S~D--gG~TW~~~~~p~~~~~~~~~~~~~I~~~~-~~~~~vG~~g~i~~S~D 190 (334)
+.++.+-+|. |..+++..+-+|.|.+ -| .|.+-+ +. .+. -.+++|.... ...++.|.....++=-|
T Consensus 54 ~~plL~c~F~--d~~~~~~G~~dg~vr~-~Dln~~~~~~-ig---th~----~~i~ci~~~~~~~~vIsgsWD~~ik~wD 122 (323)
T KOG1036|consen 54 GAPLLDCAFA--DESTIVTGGLDGQVRR-YDLNTGNEDQ-IG---THD----EGIRCIEYSYEVGCVISGSWDKTIKFWD 122 (323)
T ss_pred CCceeeeecc--CCceEEEeccCceEEE-EEecCCccee-ec---cCC----CceEEEEeeccCCeEEEcccCccEEEEe
Confidence 4789999998 5688888888887654 33 333322 11 111 1366777663 44555555444445444
Q ss_pred CCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEE-EcCCe--EEEecCCCcceeeEeccccCCCeeeE
Q 036387 191 AGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLL-VRGGG--LFLSKGTGITEEFEEVPVQSRGFGIL 267 (334)
Q Consensus 191 gG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~-~~~g~--i~~S~D~G~tW~w~~~~~~~~~~~~~ 267 (334)
.=+ +......-.+. .+..+ +..+..+++ +.+.. +|....-... ++.-... -.+...
T Consensus 123 ~R~---~~~~~~~d~~k-------------kVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~~~--~q~reS~-lkyqtR 181 (323)
T KOG1036|consen 123 PRN---KVVVGTFDQGK-------------KVYCM--DVSGNRLVVGTSDRKVLIYDLRNLDEP--FQRRESS-LKYQTR 181 (323)
T ss_pred ccc---cccccccccCc-------------eEEEE--eccCCEEEEeecCceEEEEEcccccch--hhhcccc-ceeEEE
Confidence 322 11111000000 12222 223444444 43333 4444443331 1111111 123456
Q ss_pred EEEeecCCeEEEEeC-CCcEEE-EcCCC-----cC--cEEcccCC---CcccceeEEEEee-CCeEEEEeCCeeEEEEcC
Q 036387 268 DVGYRSQDEAWAAGG-SGVLLK-TTNGG-----KT--WIREKAAD---NIAANLYSVKFIN-EKKGFVLGNDGVLLQYLG 334 (334)
Q Consensus 268 ~v~~~~~~~~~~~G~-~G~i~~-S~DgG-----~t--W~~~~~~~---~~~~~l~~i~~~~-~~~~~a~G~~G~il~s~~ 334 (334)
+|+..+.+.+|+++. +|.+++ --|.- +. ++-..... ..--++.+|+|.+ -++++-.|.+|.+..+++
T Consensus 182 ~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 182 CVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred EEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 788778788898865 676532 22322 00 00001100 1224678999987 466777789999988764
No 92
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=39.57 E-value=3.2e+02 Score=28.67 Aligned_cols=103 Identities=23% Similarity=0.360 Sum_probs=63.1
Q ss_pred EeecCCEEEE-EcCCe--EEEecCCCcceeeEeccccCC-CeeeEEEEeecCCeEEE-EeCCC--cEEEEcCCCcCcEEc
Q 036387 227 WRADGGLWLL-VRGGG--LFLSKGTGITEEFEEVPVQSR-GFGILDVGYRSQDEAWA-AGGSG--VLLKTTNGGKTWIRE 299 (334)
Q Consensus 227 ~~~~g~~~~~-~~~g~--i~~S~D~G~tW~w~~~~~~~~-~~~~~~v~~~~~~~~~~-~G~~G--~i~~S~DgG~tW~~~ 299 (334)
+.+++..+++ +..|+ ++++.|.+. |+..+.... -..+.+|+..+.++.++ +|.+- .+|.---.-.+|-.+
T Consensus 324 w~~n~~~ii~~g~~Gg~hlWkt~d~~~---w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi 400 (764)
T KOG1063|consen 324 WSPNSNVIIAHGRTGGFHLWKTKDKTF---WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI 400 (764)
T ss_pred EcCCCCEEEEecccCcEEEEeccCccc---eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee
Confidence 3455554443 23343 567777764 666554432 13578898887777554 45542 333221123459999
Q ss_pred ccCCCcccceeEEEEeeCCeEEEEeCCeeEEEE
Q 036387 300 KAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332 (334)
Q Consensus 300 ~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il~s 332 (334)
..|.--...+..++|.+....|+.|.+-.|+|.
T Consensus 401 aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 401 ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRV 433 (764)
T ss_pred cccccccccceeeehccCCceeeecccceeeee
Confidence 886222356889999987788999988888874
No 93
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=38.46 E-value=38 Score=32.01 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCcCcEEcccCC--Cc---cc------ceeEEEEe-eCCeEEEEeC
Q 036387 283 SGVLLKTTNGGKTWIREKAAD--NI---AA------NLYSVKFI-NEKKGFVLGN 325 (334)
Q Consensus 283 ~G~i~~S~DgG~tW~~~~~~~--~~---~~------~l~~i~~~-~~~~~~a~G~ 325 (334)
...|++|+|.|+||+...... +. .. ++.-.++. +++-+|+.|.
T Consensus 128 ~S~i~~S~D~G~tW~~~~~~~~~~~~~~~g~~~~~~~fq~~a~~~~dgyVYv~gt 182 (316)
T PF13810_consen 128 YSGIAYSDDNGETWTVVPGTIRPNSPFHPGFNQGNWNFQMAAFVKDDGYVYVYGT 182 (316)
T ss_pred ceEEEEeCCCCCCceeCCCcccccccccCCccccccccccccccCCCCEEEEEeC
Confidence 456899999999999997310 11 01 22223333 5778888764
No 94
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=38.33 E-value=5e+02 Score=27.31 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=43.5
Q ss_pred eeEEEEeecCCeEEEEeCCCcEEE-EcCCCcCcEEcccCCCcccceeEEE-EeeCCeEEEEeCCeeEEEE
Q 036387 265 GILDVGYRSQDEAWAAGGSGVLLK-TTNGGKTWIREKAADNIAANLYSVK-FINEKKGFVLGNDGVLLQY 332 (334)
Q Consensus 265 ~~~~v~~~~~~~~~~~G~~G~i~~-S~DgG~tW~~~~~~~~~~~~l~~i~-~~~~~~~~a~G~~G~il~s 332 (334)
.+.++++.++..+.-++.+|.|-+ +.|| +.=..... ....+|+|. +.+++.++-+|+++.+-.+
T Consensus 181 ~VRgL~vl~~~~flScsNDg~Ir~w~~~g-e~l~~~~g---htn~vYsis~~~~~~~Ivs~gEDrtlriW 246 (745)
T KOG0301|consen 181 CVRGLAVLDDSHFLSCSNDGSIRLWDLDG-EVLLEMHG---HTNFVYSISMALSDGLIVSTGEDRTLRIW 246 (745)
T ss_pred heeeeEEecCCCeEeecCCceEEEEeccC-ceeeeeec---cceEEEEEEecCCCCeEEEecCCceEEEe
Confidence 466777788888888899998744 3444 33333322 346899998 4566777778999987654
No 95
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=37.95 E-value=1.6e+02 Score=30.74 Aligned_cols=95 Identities=15% Similarity=0.237 Sum_probs=61.1
Q ss_pred ceEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCC--eEEEEcCCCcCeEeCcCCCCcccCcceeEEEEE
Q 036387 93 QPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQ--TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS 170 (334)
Q Consensus 93 ~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g--~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~ 170 (334)
.++||.|. ..|++...+...-..+.+|+..|. .+-++.+|.+- .|+.---.-++|.++..|.-+ +|.++++.
T Consensus 341 hlWkt~d~-~~w~~~~~iSGH~~~V~dv~W~ps-GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH----GyDl~c~~ 414 (764)
T KOG1063|consen 341 HLWKTKDK-TFWTQEPVISGHVDGVKDVDWDPS-GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH----GYDLTCLS 414 (764)
T ss_pred EEEeccCc-cceeeccccccccccceeeeecCC-CCEEEEeccccceeeecccccccceeeecccccc----cccceeee
Confidence 45665553 458776554443467889999873 45566667543 244322234569999988764 46788888
Q ss_pred EeC-CeEEEEEcCCEEEEEcCCCC
Q 036387 171 FKG-KEGWIVGKPAILLHTSDAGE 193 (334)
Q Consensus 171 ~~~-~~~~~vG~~g~i~~S~DgG~ 193 (334)
|.+ +..|+.|..-.|+|.=+.-+
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred hccCCceeeecccceeeeeecCcH
Confidence 876 77888877766776654433
No 96
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=37.08 E-value=4.7e+02 Score=26.63 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=64.4
Q ss_pred EeeeeEeecCCEEEEEcC-C-eEEEecCCCc----ceeeEeccccCCCeeeEEEEeecCCeEEEEeC--CCcEEEEcCCC
Q 036387 222 IQNMGWRADGGLWLLVRG-G-GLFLSKGTGI----TEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG--SGVLLKTTNGG 293 (334)
Q Consensus 222 i~~~~~~~~g~~~~~~~~-g-~i~~S~D~G~----tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~--~G~i~~S~DgG 293 (334)
|..+.+++|+..++++.. + -+.++....+ .|.|.. ..+.+++..+++..+|.|. ...+.++-+.-
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHt-------akI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHT-------AKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeee-------eeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 556778888887776642 2 2444443322 222222 2578899988888888765 23445565554
Q ss_pred cCcEEcccCCCcccceeEEEEeeCCeEEEEeCCeeEEEE
Q 036387 294 KTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY 332 (334)
Q Consensus 294 ~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il~s 332 (334)
..=-.+..+ . ...++.+.+.++.+++-.|++--|-.+
T Consensus 563 ~~~i~iknA-H-~~gVn~v~wlde~tvvSsG~Da~iK~W 599 (603)
T KOG0318|consen 563 AKHIIIKNA-H-LGGVNSVAWLDESTVVSSGQDANIKVW 599 (603)
T ss_pred hhheEeccc-c-ccCceeEEEecCceEEeccCcceeEEe
Confidence 444555442 2 234999999999999999998776543
No 97
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=36.98 E-value=1.2e+02 Score=29.33 Aligned_cols=51 Identities=10% Similarity=0.106 Sum_probs=34.6
Q ss_pred EEEEeCCCcEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeCCeeEEEEc
Q 036387 277 AWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL 333 (334)
Q Consensus 277 ~~~~G~~G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il~s~ 333 (334)
+++++..|.+..=.| ++|..+.. ....+.+|.+. +|++||+...|.++..+
T Consensus 175 vl~i~~~g~l~~w~~--~~Wt~l~~---~~~~~~DIi~~-kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 175 VLGIGRDGKINYWDG--NVLKALKQ---MGYHFSDIIVH-KGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEEeecCcEeeecC--CeeeEccC---CCceeeEEEEE-CCEEEEEcCCCeEEEEe
Confidence 444555666633223 78999975 24578888886 68899998888877543
No 98
>PLN02153 epithiospecifier protein
Probab=36.98 E-value=3.6e+02 Score=25.25 Aligned_cols=53 Identities=8% Similarity=0.073 Sum_probs=29.8
Q ss_pred CCeEEEEeCC---------------CcEEEEcCCCcCcEEcccCC--Ccccce---eEEEEeeCCeEEEEeCC
Q 036387 274 QDEAWAAGGS---------------GVLLKTTNGGKTWIREKAAD--NIAANL---YSVKFINEKKGFVLGND 326 (334)
Q Consensus 274 ~~~~~~~G~~---------------G~i~~S~DgG~tW~~~~~~~--~~~~~l---~~i~~~~~~~~~a~G~~ 326 (334)
++.+|++|.. ..+|.-.-.-++|+.+.... +.+... ..+....++.+|+.|..
T Consensus 251 ~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~ 323 (341)
T PLN02153 251 GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGK 323 (341)
T ss_pred CCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCc
Confidence 5788988763 14555555567899886421 112222 22332345678887754
No 99
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=36.24 E-value=48 Score=26.96 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=13.4
Q ss_pred EEEEcCCCcCcEEcccC
Q 036387 286 LLKTTNGGKTWIREKAA 302 (334)
Q Consensus 286 i~~S~DgG~tW~~~~~~ 302 (334)
+=.|.|+|+||+.....
T Consensus 46 VEVS~DgG~tW~~A~l~ 62 (131)
T PF03404_consen 46 VEVSTDGGKTWQEATLD 62 (131)
T ss_dssp EEEESSTTSSEEE-EEE
T ss_pred EEEEeCCCCCcEEeEec
Confidence 45799999999998763
No 100
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=35.65 E-value=4e+02 Score=25.39 Aligned_cols=213 Identities=17% Similarity=0.253 Sum_probs=105.3
Q ss_pred eEEecCCCCCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcC-CeEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEe
Q 036387 94 PAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTR-QTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFK 172 (334)
Q Consensus 94 i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~-g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~ 172 (334)
|| +.++.+-|+....-.+.+..++.|...| ..+++.-++++ +..+-+.-.|.+|.+...-... +-..+.|.-.
T Consensus 36 iy-~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~~WkptlvLlRi----NrAAt~V~Ws 109 (361)
T KOG1523|consen 36 IY-SMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRI----NRAATCVKWS 109 (361)
T ss_pred EE-EecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCCeeccceeEEEe----ccceeeEeec
Confidence 44 4666667998865444457788898887 45677766653 4333344235679876421111 0123344444
Q ss_pred C-CeEEEEEcCCE----EEEEcCCCCCe-EEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEc-CC--eE-
Q 036387 173 G-KEGWIVGKPAI----LLHTSDAGESW-ERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVR-GG--GL- 242 (334)
Q Consensus 173 ~-~~~~~vG~~g~----i~~S~DgG~TW-~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~-~g--~i- 242 (334)
+ ...|++|..+. .|... -+.| -..... .| +..++..+.+.+++.+.+++. ++ .+
T Consensus 110 P~enkFAVgSgar~isVcy~E~--ENdWWVsKhik--kP------------irStv~sldWhpnnVLlaaGs~D~k~rVf 173 (361)
T KOG1523|consen 110 PKENKFAVGSGARLISVCYYEQ--ENDWWVSKHIK--KP------------IRSTVTSLDWHPNNVLLAAGSTDGKCRVF 173 (361)
T ss_pred CcCceEEeccCccEEEEEEEec--ccceehhhhhC--Cc------------cccceeeeeccCCcceecccccCcceeEE
Confidence 5 67788887552 22221 1235 211110 01 112344455555555555442 11 11
Q ss_pred ---EE---ecCCCcceeeEecccc-------CCCeeeEEEEeecCCeEEE-EeCCCcEEEEcCCCcCcEEcccCCCcccc
Q 036387 243 ---FL---SKGTGITEEFEEVPVQ-------SRGFGILDVGYRSQDEAWA-AGGSGVLLKTTNGGKTWIREKAADNIAAN 308 (334)
Q Consensus 243 ---~~---S~D~G~tW~w~~~~~~-------~~~~~~~~v~~~~~~~~~~-~G~~G~i~~S~DgG~tW~~~~~~~~~~~~ 308 (334)
.+ ..+....|- .+++.. ..+..+.++.|.+.+..++ ++.+..+..-.+.|.. +++........+
T Consensus 174 SayIK~Vdekpap~pWg-sk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~-~~v~~~~~~~lP 251 (361)
T KOG1523|consen 174 SAYIKGVDEKPAPTPWG-SKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS-ERVQSVATAQLP 251 (361)
T ss_pred EEeeeccccCCCCCCCc-cCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc-hhccchhhccCC
Confidence 11 222333331 112211 1122467777765443322 3666666444444432 122221112367
Q ss_pred eeEEEEeeCCeEEEEeCC-eeEE
Q 036387 309 LYSVKFINEKKGFVLGND-GVLL 330 (334)
Q Consensus 309 l~~i~~~~~~~~~a~G~~-G~il 330 (334)
+.++.|..++.++++|.+ +-++
T Consensus 252 ~ls~~~ise~~vv~ag~~c~P~l 274 (361)
T KOG1523|consen 252 LLSVSWISENSVVAAGYDCGPVL 274 (361)
T ss_pred ceeeEeecCCceeecCCCCCceE
Confidence 889999999999999987 4333
No 101
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=35.04 E-value=3.5e+02 Score=24.57 Aligned_cols=198 Identities=14% Similarity=0.256 Sum_probs=88.8
Q ss_pred eeeEEEEEecCCCCEEEEEEcC-CeEE-EEcCCCcCeEeCcCCCCcccCcceeEEEEEEeCCeEEEEEc--CCEE--EEE
Q 036387 115 VVLLDIAFVPDDLNHGFLLGTR-QTLL-ETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGK--PAIL--LHT 188 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG~~-g~i~-~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~~~~~~vG~--~g~i--~~S 188 (334)
..+.+|++.| +.+++|+|... +.|+ .+.+ |+==.++.+.... -..+|++.++..|++.+ .+.| +.-
T Consensus 22 ~e~SGLTy~p-d~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~------D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 22 DELSGLTYNP-DTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFG------DYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp S-EEEEEEET-TTTEEEEEETTTTEEEEEETT---EEEEEE-SS-S------SEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CCccccEEcC-CCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCC------CceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 4589999998 56889999764 4443 3555 4433333333322 25577776644555543 3433 333
Q ss_pred cCCCCCeEE-----eecCCCCCCCcccccccCccccceEeeeeEeec-CCEEEEEcCC--eEEEecC--CCcceeeEe-c
Q 036387 189 SDAGESWER-----IPLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD-GGLWLLVRGG--GLFLSKG--TGITEEFEE-V 257 (334)
Q Consensus 189 ~DgG~TW~~-----~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~g--~i~~S~D--~G~tW~w~~-~ 257 (334)
.+.+++=+. +... ++ ...|. .+..+++.+. ++++++-+.. .||...- .+..-.... .
T Consensus 94 ~~~~~~~~~~~~~~~~l~--~~------~~~N~----G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLG--FP------NKGNK----GFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp ----TT--EEEEEEEE-----S---------SS------EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-H
T ss_pred eccccccchhhceEEecc--cc------cCCCc----ceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccc
Confidence 333332222 2211 11 11121 2455666654 4566654432 3443321 111000000 1
Q ss_pred ccc---CCCeeeEEEEeec-CCeEEEEeC-CCcEEEEcCCCcCcEEcccCCCc------ccceeEEEEeeCCeEEEEeCC
Q 036387 258 PVQ---SRGFGILDVGYRS-QDEAWAAGG-SGVLLKTTNGGKTWIREKAADNI------AANLYSVKFINEKKGFVLGND 326 (334)
Q Consensus 258 ~~~---~~~~~~~~v~~~~-~~~~~~~G~-~G~i~~S~DgG~tW~~~~~~~~~------~~~l~~i~~~~~~~~~a~G~~ 326 (334)
... .....+-+++|.+ .+++|+... +..|+..+..|+--+.+....+. -..--.|++.++|++|++.+-
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT
T ss_pred ccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC
Confidence 111 1112345677665 467877655 56778888888766666553211 124668999999999999998
Q ss_pred eeEEEE
Q 036387 327 GVLLQY 332 (334)
Q Consensus 327 G~il~s 332 (334)
-.+++.
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 877764
No 102
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=34.80 E-value=42 Score=31.91 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=14.4
Q ss_pred EEEEcCCCcCeEeCcCC
Q 036387 139 LLETKDGGKTWAPRSIP 155 (334)
Q Consensus 139 i~~S~DgG~TW~~~~~p 155 (334)
+-.|.|+|+||+...+.
T Consensus 243 VEVS~DgG~tW~~A~l~ 259 (326)
T cd02113 243 VDVSFDGGRTWQDARLE 259 (326)
T ss_pred EEEEcCCCCCceECccC
Confidence 66799999999998763
No 103
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=34.31 E-value=1.6e+02 Score=28.86 Aligned_cols=104 Identities=16% Similarity=0.293 Sum_probs=51.8
Q ss_pred EeeeeEeecCCEEEEEcCCeEEEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeCCCcEEEEcCCCcCcEEccc
Q 036387 222 IQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKA 301 (334)
Q Consensus 222 i~~~~~~~~g~~~~~~~~g~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~S~DgG~tW~~~~~ 301 (334)
|..+.+.++|+-++++..-+-|. -=+|.+..|+.+--..+ ..+..+.+..++.-.+.|+.|...+ -|+.--.
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFt-LWNg~~fnFEtilQaHD-s~Vr~m~ws~~g~wmiSgD~gG~iK------yWqpnmn 170 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFT-LWNGTSFNFETILQAHD-SPVRTMKWSHNGTWMISGDKGGMIK------YWQPNMN 170 (464)
T ss_pred eeeEEEcCCCceeEeecccccEE-EecCceeeHHHHhhhhc-ccceeEEEccCCCEEEEcCCCceEE------ecccchh
Confidence 44566788887555543322111 11233333332211111 2345555554455445555444333 3665322
Q ss_pred C-----CCcccceeEEEEeeCCeEEE-EeCCeeEEEEc
Q 036387 302 A-----DNIAANLYSVKFINEKKGFV-LGNDGVLLQYL 333 (334)
Q Consensus 302 ~-----~~~~~~l~~i~~~~~~~~~a-~G~~G~il~s~ 333 (334)
- ..-.+.+.+++|+++...|+ +.++|.|..++
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence 0 01125789999987666665 56888887654
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=33.44 E-value=2.4e+02 Score=25.45 Aligned_cols=80 Identities=11% Similarity=0.207 Sum_probs=47.1
Q ss_pred eeEeccccCCCeeeEEEEeecCCeEEEEeCCCcEEEEc------CCCcCcEEcccC--------CCcccceeEEEEeeCC
Q 036387 253 EFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTT------NGGKTWIREKAA--------DNIAANLYSVKFINEK 318 (334)
Q Consensus 253 ~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~S~------DgG~tW~~~~~~--------~~~~~~l~~i~~~~~~ 318 (334)
+|..+.+-.+...+.+++|.+.+.+|++|.+..-||-- |--.-=+....| ..-...+|..++++.+
T Consensus 22 ~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred ceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 35555444444567889998889999998764433321 100000111111 0113578999999999
Q ss_pred eEEEEeCCeeEEEE
Q 036387 319 KGFVLGNDGVLLQY 332 (334)
Q Consensus 319 ~~~a~G~~G~il~s 332 (334)
+++|.|.+-...|+
T Consensus 102 eliatgsndk~ik~ 115 (350)
T KOG0641|consen 102 ELIATGSNDKTIKV 115 (350)
T ss_pred CeEEecCCCceEEE
Confidence 99999987765554
No 105
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=33.32 E-value=2.1e+02 Score=27.54 Aligned_cols=64 Identities=11% Similarity=0.263 Sum_probs=44.8
Q ss_pred eeEEEEeecCCeEEEEeC-CCcE---EEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEE-EeCCeeEE
Q 036387 265 GILDVGYRSQDEAWAAGG-SGVL---LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFV-LGNDGVLL 330 (334)
Q Consensus 265 ~~~~v~~~~~~~~~~~G~-~G~i---~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a-~G~~G~il 330 (334)
.+-+++|.+++..+|.+. .|.| |...| |+--.....+ -....+++++|.++.+.++ +++.++|.
T Consensus 175 ~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG-~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRG-TYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred ceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCC-ceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 567888988899888654 5654 44444 6666666663 2357899999998877665 46777754
No 106
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=32.90 E-value=2.7e+02 Score=25.13 Aligned_cols=74 Identities=22% Similarity=0.465 Sum_probs=40.6
Q ss_pred EeeeeEeecCCEEEEEcC--C-eE-EEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeCCCcEEEEcCCCcCcE
Q 036387 222 IQNMGWRADGGLWLLVRG--G-GL-FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWI 297 (334)
Q Consensus 222 i~~~~~~~~g~~~~~~~~--g-~i-~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~S~DgG~tW~ 297 (334)
+..+.|..++.+.+.+.. . .. +.+.|++.. +.++.......+.++. .....+|+ ..++.+++ ...|..|+
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~---~~l~~~~~~~~v~a~~-~~~~~~~~-t~~~~~~~-~~~~~~W~ 241 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPS---TPLPSVNLGVPVVAVA-ASPSTVYV-TDDGGVLQ-SRSGASWR 241 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCCceeEEEEccCCcc---cccCCCCCCcceEEee-CCCcEEEE-ECCCcEEE-CCCCCcce
Confidence 445777777777766532 1 12 467787752 3331111122344443 22344444 45666766 45688999
Q ss_pred Eccc
Q 036387 298 REKA 301 (334)
Q Consensus 298 ~~~~ 301 (334)
.+..
T Consensus 242 ~v~~ 245 (253)
T PF10647_consen 242 EVPG 245 (253)
T ss_pred EccC
Confidence 9987
No 107
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=32.85 E-value=2.5e+02 Score=28.67 Aligned_cols=53 Identities=9% Similarity=0.251 Sum_probs=37.4
Q ss_pred CeeeEEEEeecCCeEEEEeCCCcEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEe-CCeeE
Q 036387 263 GFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLG-NDGVL 329 (334)
Q Consensus 263 ~~~~~~v~~~~~~~~~~~G~~G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G-~~G~i 329 (334)
.+.+.+|+|.++ +.|++|....+ | +.. +....++.++++.+|+=.++| ..|.+
T Consensus 227 ey~ITSva~npd-~~~~v~S~nt~-R----------~~~--p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 227 EYAITSVAFNPE-KDYLLWSYNTA-R----------FSS--PRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ccceeeeeeccc-cceeeeeeeee-e----------ecC--CCccceEEEEEcCCCceeeccccCceE
Confidence 468899999766 89999886654 3 333 234678999998888877765 55544
No 108
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=32.64 E-value=4.4e+02 Score=25.02 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=59.8
Q ss_pred eEeeeeEeecCCEEEEE-cCCeE---EEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEe-CCCcE--EEEcCCC
Q 036387 221 RIQNMGWRADGGLWLLV-RGGGL---FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAG-GSGVL--LKTTNGG 293 (334)
Q Consensus 221 ~i~~~~~~~~g~~~~~~-~~g~i---~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G-~~G~i--~~S~DgG 293 (334)
.|..++..-+|.+++.. ..|.+ |-+.|+.+ -++..-......++.++|.++...+++. +.|.+ |.-.|.-
T Consensus 183 ~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~---l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATASTKGTLIRIFDTEDGTL---LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE---eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 34455555677777654 46654 44556554 2333222222368899997766655553 34543 3333322
Q ss_pred --cC-------------------cEEcccCCCcccceeEEEEeeC-CeEEEEeCCeeEEEE
Q 036387 294 --KT-------------------WIREKAADNIAANLYSVKFINE-KKGFVLGNDGVLLQY 332 (334)
Q Consensus 294 --~t-------------------W~~~~~~~~~~~~l~~i~~~~~-~~~~a~G~~G~il~s 332 (334)
+. |....-. -...+..-++|-.+ +++++++.+|..+|.
T Consensus 260 ~~~~~~SSl~~~~~~lpky~~S~wS~~~f~-l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~ 319 (346)
T KOG2111|consen 260 NTEDESSSLSFKRLVLPKYFSSEWSFAKFQ-LPQGTQCIIAFGSETNTVIAICADGSYYKF 319 (346)
T ss_pred CCccccccccccccccchhcccceeEEEEE-ccCCCcEEEEecCCCCeEEEEEeCCcEEEE
Confidence 11 3332221 01235556667655 899999999998875
No 109
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=32.42 E-value=2.8e+02 Score=26.45 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=38.0
Q ss_pred CCeeeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEeC--CeEEEEEcCCEEEE
Q 036387 113 PGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKG--KEGWIVGKPAILLH 187 (334)
Q Consensus 113 ~~~~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~--~~~~~vG~~g~i~~ 187 (334)
.+..++.|...|.||.+.+++.-..+++.-.=.|+-=........+.++ .+.++ ..+ .-+|++|+.+.+|-
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGd---Fi~~~-lSpkGewiYcigED~vlYC 463 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGD---FINAI-LSPKGEWIYCIGEDGVLYC 463 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCc---eEEEE-ecCCCcEEEEEccCcEEEE
Confidence 3478888888888888877665433333333333221111222222222 23333 343 55778898886664
No 110
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=32.41 E-value=44 Score=32.29 Aligned_cols=17 Identities=24% Similarity=0.659 Sum_probs=14.2
Q ss_pred EEEEcCCCcCeEeCcCC
Q 036387 139 LLETKDGGKTWAPRSIP 155 (334)
Q Consensus 139 i~~S~DgG~TW~~~~~p 155 (334)
+-.|.|+|+||++..+.
T Consensus 293 VEVS~DgG~tW~~A~l~ 309 (367)
T cd02114 293 VDVSADGGDSWTQATLG 309 (367)
T ss_pred EEEEeCCCCcceEeEeC
Confidence 66799999999988663
No 111
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=31.99 E-value=82 Score=17.32 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=14.7
Q ss_pred cceeEEEEeeCCeEEEEeC
Q 036387 307 ANLYSVKFINEKKGFVLGN 325 (334)
Q Consensus 307 ~~l~~i~~~~~~~~~a~G~ 325 (334)
..+++|....++++|+.+.
T Consensus 5 n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SCEEEEEE-TTSCEEEEET
T ss_pred CeEEEEEEcCCcCEEEEeC
Confidence 5788888888899998765
No 112
>PLN02193 nitrile-specifier protein
Probab=31.54 E-value=5.3e+02 Score=25.59 Aligned_cols=204 Identities=12% Similarity=0.116 Sum_probs=92.5
Q ss_pred CCcEEcccCCC-C-CeeeEEEEEecCCCCEEEEEEcC--------CeEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEE
Q 036387 102 SAWERVYIPVD-P-GVVLLDIAFVPDDLNHGFLLGTR--------QTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF 171 (334)
Q Consensus 102 ~tW~~~~~p~~-~-~~~l~~I~~~p~d~~~~~avG~~--------g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~ 171 (334)
.+|..+..... + .-.-+..+.. .+.+|++|.. ..+++=+-.-.+|+.+......+.. ...-.++..
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~---~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~-~~~~~~~v~ 226 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQV---GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHL-SCLGVRMVS 226 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEE---CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCC-cccceEEEE
Confidence 58998764211 1 0122344443 2678887642 1133333345679976432111110 001112334
Q ss_pred eCCeEEEEEcC------CEEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCC-----
Q 036387 172 KGKEGWIVGKP------AILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGG----- 240 (334)
Q Consensus 172 ~~~~~~~vG~~------g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g----- 240 (334)
.++.+|+.|.. ..+++-+=.-.+|+.+......|... + ...+. ..++.+|+.+...
T Consensus 227 ~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R-~-----------~h~~~-~~~~~iYv~GG~~~~~~~ 293 (470)
T PLN02193 227 IGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPR-S-----------FHSMA-ADEENVYVFGGVSATARL 293 (470)
T ss_pred ECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCc-c-----------ceEEE-EECCEEEEECCCCCCCCc
Confidence 56788887642 23444333456899876321111111 0 01111 2356788876422
Q ss_pred -eEEEecCCCcceeeEeccccC---CCeeeEEEEeecCCeEEEEeCC-----CcEEEEcCCCcCcEEcccC--CCcccce
Q 036387 241 -GLFLSKGTGITEEFEEVPVQS---RGFGILDVGYRSQDEAWAAGGS-----GVLLKTTNGGKTWIREKAA--DNIAANL 309 (334)
Q Consensus 241 -~i~~S~D~G~tW~w~~~~~~~---~~~~~~~v~~~~~~~~~~~G~~-----G~i~~S~DgG~tW~~~~~~--~~~~~~l 309 (334)
.++.-.-.-. +|..++.+. ....-..+... ++.+|++|.. ..++.-.-.-.+|+++... .+.....
T Consensus 294 ~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~ 370 (470)
T PLN02193 294 KTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSV 370 (470)
T ss_pred ceEEEEECCCC--EEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcce
Confidence 1222111112 466654321 11111122222 5678887652 2344444345679998652 1223344
Q ss_pred eEEEEeeCCeEEEEeCC
Q 036387 310 YSVKFINEKKGFVLGND 326 (334)
Q Consensus 310 ~~i~~~~~~~~~a~G~~ 326 (334)
.+++.. ++++|+.|..
T Consensus 371 ~~~~~~-~~~iyv~GG~ 386 (470)
T PLN02193 371 FASAAV-GKHIVIFGGE 386 (470)
T ss_pred eEEEEE-CCEEEEECCc
Confidence 444444 5789988763
No 113
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=31.28 E-value=7.4e+02 Score=27.20 Aligned_cols=205 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCcEEcccCCCCCeeeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCCcccCcceeEEEEEEeCCeEEEEEc
Q 036387 102 SAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGK 181 (334)
Q Consensus 102 ~tW~~~~~p~~~~~~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~~~~~~~~vG~ 181 (334)
++|+.+..-......+.+|...| |..-+.-++-++.|..-. ++|++.+..-..+.. .+..+.+++-.-|++.+
T Consensus 117 E~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn--~~tF~~~~vl~~H~s----~VKGvs~DP~Gky~ASq 189 (942)
T KOG0973|consen 117 ESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN--AKTFELLKVLRGHQS----LVKGVSWDPIGKYFASQ 189 (942)
T ss_pred ceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc--cccceeeeeeecccc----cccceEECCccCeeeee
Q ss_pred CC----EEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEE----cCCeEEEecCCCccee
Q 036387 182 PA----ILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLV----RGGGLFLSKGTGITEE 253 (334)
Q Consensus 182 ~g----~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~----~~g~i~~S~D~G~tW~ 253 (334)
.. .|+++.| |+....-.+.-.+. .....+..+.++|||..+++. +......--+-|.
T Consensus 190 sdDrtikvwrt~d----w~i~k~It~pf~~~--------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t--- 254 (942)
T KOG0973|consen 190 SDDRTLKVWRTSD----WGIEKSITKPFEES--------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT--- 254 (942)
T ss_pred cCCceEEEEEccc----ceeeEeeccchhhC--------CCcceeeecccCCCcCeecchhhccCCcceeEEEecCC---
Q ss_pred eE-eccccCCCeeeEEEEeec-----CCe------------EEEEeC-CCcE-EEEcCCCcCcEEcccCCCcccceeEEE
Q 036387 254 FE-EVPVQSRGFGILDVGYRS-----QDE------------AWAAGG-SGVL-LKTTNGGKTWIREKAADNIAANLYSVK 313 (334)
Q Consensus 254 w~-~~~~~~~~~~~~~v~~~~-----~~~------------~~~~G~-~G~i-~~S~DgG~tW~~~~~~~~~~~~l~~i~ 313 (334)
|. ...+.+-..++.-+.|++ .+. +.|+|. ++.| ..++=--+---.+.. -....+.++.
T Consensus 255 Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~--lf~~SI~Dms 332 (942)
T KOG0973|consen 255 WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN--LFNKSIVDMS 332 (942)
T ss_pred ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh--hhcCceeeee
Q ss_pred EeeCCe-EEEEeCCeeEE
Q 036387 314 FINEKK-GFVLGNDGVLL 330 (334)
Q Consensus 314 ~~~~~~-~~a~G~~G~il 330 (334)
+.++|. +||+..+|.|.
T Consensus 333 WspdG~~LfacS~DGtV~ 350 (942)
T KOG0973|consen 333 WSPDGFSLFACSLDGTVA 350 (942)
T ss_pred EcCCCCeEEEEecCCeEE
No 114
>cd02847 Chitobiase_C_term Chitobiase C-terminus domain. Chitobiase (AKA N-acetylglucosaminidase) digests the beta, 1-4 glycosidic bonds of the N-acetylglucosamine (NAG) oligomers found in chitin, an important structural element of fungal cell wall and arthropod exoskeletons. It is thought to proceed through an acid-base reaction mechanism, in which one protein carboxylate acts as catalytic acid, while the nucleophile is the polar acetamido group of the sugar in a substrate-assisted reaction with retention of the anomeric configuration. The C-terminus of chitobiase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chit
Probab=30.83 E-value=81 Score=23.27 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=15.7
Q ss_pred CeEEEEcCCCcCeEeCcCC
Q 036387 137 QTLLETKDGGKTWAPRSIP 155 (334)
Q Consensus 137 g~i~~S~DgG~TW~~~~~p 155 (334)
..|..|.|+|++|+....|
T Consensus 33 ~~i~Yt~dgg~~w~~Y~~p 51 (78)
T cd02847 33 LTLQYSTDGGKNWNIYDAA 51 (78)
T ss_pred cEEEEEecCCccCeecccc
Confidence 3588899999999987654
No 115
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=30.24 E-value=2.2e+02 Score=26.79 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=42.2
Q ss_pred EEEeecCCeEEEEeCCC-cE----EEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEE-eCCeeEE
Q 036387 268 DVGYRSQDEAWAAGGSG-VL----LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL-GNDGVLL 330 (334)
Q Consensus 268 ~v~~~~~~~~~~~G~~G-~i----~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~-G~~G~il 330 (334)
.++|.+.+-++|++..+ .| .|+.|.|- .+......+.......|.|+++|...++ .+.+.++
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP-F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGP-FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIY 212 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCC-ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence 45677888888887755 22 57788773 6666554344578999999988886655 4555444
No 116
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=28.90 E-value=60 Score=31.61 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=14.7
Q ss_pred EEEEcCCCcCeEeCcCC
Q 036387 139 LLETKDGGKTWAPRSIP 155 (334)
Q Consensus 139 i~~S~DgG~TW~~~~~p 155 (334)
+-.|.|||+||++..+.
T Consensus 305 VeVS~DgG~tW~~A~L~ 321 (386)
T cd02112 305 VEVSLDDGKSWKLASID 321 (386)
T ss_pred EEEEcCCCCCceeCCCC
Confidence 67799999999998763
No 117
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=27.94 E-value=6.2e+02 Score=25.30 Aligned_cols=191 Identities=14% Similarity=0.126 Sum_probs=84.6
Q ss_pred eeeEEEEEecCCCCEEEEEEcCCeEEEEcCC-CcCeEeCcCCCCcccCcceeEEEEEEeCCeEEEEEcCCEEEEEcCCCC
Q 036387 115 VVLLDIAFVPDDLNHGFLLGTRQTLLETKDG-GKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGE 193 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG~~g~i~~S~Dg-G~TW~~~~~p~~~~~~~~~~~~~I~~~~~~~~~vG~~g~i~~S~DgG~ 193 (334)
.++....|.| +....++++..-..|.+-|= -..-+++..|.... +...+...|...++.+.+.|..|.|+.-.- +
T Consensus 258 fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G~I~lLha--k 333 (514)
T KOG2055|consen 258 FPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNGHIHLLHA--K 333 (514)
T ss_pred CccceeeecC-CCceEEEecccceEEEEeeccccccccccCCCCcc-cchhheeEecCCCCeEEEcccCceEEeehh--h
Confidence 6788888988 44434444445566777773 11223333333221 111222222222355556788775544321 1
Q ss_pred CeEEeecCCCCCCCcccccccCccccceEeeeeEeecCC-EEEEEcCCeEEEecCCCcceeeEeccccCCCeeeEEEEee
Q 036387 194 SWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGG-LWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYR 272 (334)
Q Consensus 194 TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~-~~~~~~~g~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~ 272 (334)
|=+-+.. -+++| .+..+.|+.++. +|+.+..|.||.-. -++. .-...-......+-..++..
T Consensus 334 T~eli~s-~KieG--------------~v~~~~fsSdsk~l~~~~~~GeV~v~n-l~~~-~~~~rf~D~G~v~gts~~~S 396 (514)
T KOG2055|consen 334 TKELITS-FKIEG--------------VVSDFTFSSDSKELLASGGTGEVYVWN-LRQN-SCLHRFVDDGSVHGTSLCIS 396 (514)
T ss_pred hhhhhhe-eeecc--------------EEeeEEEecCCcEEEEEcCCceEEEEe-cCCc-ceEEEEeecCccceeeeeec
Confidence 1122221 11222 233344544443 55555555554321 1110 00000011111111233333
Q ss_pred cCCeEEEEeCC-CcEEEEcCC-----CcCcEEcccCCCcccceeEEEEeeCCeEEEEeCCe
Q 036387 273 SQDEAWAAGGS-GVLLKTTNG-----GKTWIREKAADNIAANLYSVKFINEKKGFVLGNDG 327 (334)
Q Consensus 273 ~~~~~~~~G~~-G~i~~S~Dg-----G~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G 327 (334)
..+..+|+|.+ |.+ ---|+ +.+=+.+..-++....+.++.|..+.+++|...++
T Consensus 397 ~ng~ylA~GS~~GiV-NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~ 456 (514)
T KOG2055|consen 397 LNGSYLATGSDSGIV-NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV 456 (514)
T ss_pred CCCceEEeccCcceE-EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc
Confidence 45567777775 433 22232 11222222223445678899998888888876554
No 118
>PTZ00421 coronin; Provisional
Probab=27.44 E-value=6.5e+02 Score=25.32 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=17.4
Q ss_pred eeeEEEEEecCCCCEEEEEEcCCeE
Q 036387 115 VVLLDIAFVPDDLNHGFLLGTRQTL 139 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG~~g~i 139 (334)
..+++|.|.|.|.+.++.++.++.|
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 5789999987445555555667764
No 119
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=27.23 E-value=3e+02 Score=26.09 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=43.0
Q ss_pred eeEEEEeecCCeEEEEeC-CCc---EEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEE-eCCeeEE
Q 036387 265 GILDVGYRSQDEAWAAGG-SGV---LLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVL-GNDGVLL 330 (334)
Q Consensus 265 ~~~~v~~~~~~~~~~~G~-~G~---i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~-G~~G~il 330 (334)
.+-.++..-++..+|.+. .|. ||-|.||++ =+.+..+ -..+.+|.|+|+++..++|+ .+.|++.
T Consensus 183 ~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-l~E~RRG-~d~A~iy~iaFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-LQELRRG-VDRADIYCIAFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-eeeeecC-CchheEEEEEeCCCccEEEEEcCCCeEE
Confidence 344555556788877644 565 566777654 4445542 34689999999998888876 5778765
No 120
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=27.10 E-value=1.2e+02 Score=18.80 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=16.2
Q ss_pred cceeEEEEeeCCeEEEEeCC
Q 036387 307 ANLYSVKFINEKKGFVLGND 326 (334)
Q Consensus 307 ~~l~~i~~~~~~~~~a~G~~ 326 (334)
....+|+.+.++.+|++|..
T Consensus 13 ~~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECCCCCEEEEEee
Confidence 35788998889999999853
No 121
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.03 E-value=1.4e+02 Score=29.59 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=42.1
Q ss_pred eeEEEEeecCCeEEEEeCCCcEEEEcCCCcCcEEcccCCCcccceeEEEEee-CCeEEEEeCCeeEEEE
Q 036387 265 GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFIN-EKKGFVLGNDGVLLQY 332 (334)
Q Consensus 265 ~~~~v~~~~~~~~~~~G~~G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~-~~~~~a~G~~G~il~s 332 (334)
..+++.|+.+++++++|+.-...+-.| =++=..+..-..-..++..+.|.+ +++.++.|.++.+.++
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD-~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFD-MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEec-cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence 467889999999999988543435556 444111221111124566666654 6788888888877664
No 122
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=25.50 E-value=2.1e+02 Score=27.59 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=14.7
Q ss_pred EEEEcCCCcCeEeCcCC
Q 036387 139 LLETKDGGKTWAPRSIP 155 (334)
Q Consensus 139 i~~S~DgG~TW~~~~~p 155 (334)
+-.|.|||+||+...+.
T Consensus 281 VEVS~DgG~tW~~A~l~ 297 (365)
T cd02111 281 VDVSLDGGRTWKVAELE 297 (365)
T ss_pred EEEECCCCCcceeCCcC
Confidence 67799999999998764
No 123
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=25.36 E-value=2.2e+02 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.9
Q ss_pred eeeEEEEEecCCCCEEEEEEcCCeEEE
Q 036387 115 VVLLDIAFVPDDLNHGFLLGTRQTLLE 141 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG~~g~i~~ 141 (334)
..+..|.|.|+||++++.+.++|.+++
T Consensus 224 ~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 224 AEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred hhhhheeccCCCchheeEecCCCcEEE
Confidence 567889999999999999988888876
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.30 E-value=5.9e+02 Score=24.16 Aligned_cols=195 Identities=12% Similarity=0.178 Sum_probs=94.9
Q ss_pred eeeEEEEEecCCCCEEEEEEcCC--eEEEEcCCCcCeEeCcCCCCcccCcceeEEEEE-EeC--CeEEEEEc-CC--EEE
Q 036387 115 VVLLDIAFVPDDLNHGFLLGTRQ--TLLETKDGGKTWAPRSIPSAEEEDFNYRFNSIS-FKG--KEGWIVGK-PA--ILL 186 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG~~g--~i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~-~~~--~~~~~vG~-~g--~i~ 186 (334)
.-++++.|++. ..++-.+..++ .||.+++.-.+|.....=..++. .+.+|. .++ +++++.-. .. .|+
T Consensus 14 DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~----Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 14 DLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG----SIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC----cEEEEEecCccccceEEEEecCCceeee
Confidence 45789999763 45544444455 38887777788986542111111 233443 233 34443321 11 121
Q ss_pred ----EEcCC-CCCeEEeecCCCCCCCcccccccCccccceEeeeeEeec-CCEEE-E-EcCC--eEEEecCCC--cceee
Q 036387 187 ----HTSDA-GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRAD-GGLWL-L-VRGG--GLFLSKGTG--ITEEF 254 (334)
Q Consensus 187 ----~S~Dg-G~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~-g~~~~-~-~~~g--~i~~S~D~G--~tW~w 254 (334)
++.+. |+.|.+...-. +. ...+..+.|.+. -++-+ + ..+| .||--.|-. ..|+.
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~---Ds-----------rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLV---DS-----------RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eecccccccccceeEEEEEee---cC-----------CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 22222 55676665321 11 112333444332 12222 2 2233 234444432 23432
Q ss_pred Ee----ccccCC--CeeeEEEEeecC---CeEEEEeCC--------CcEEEEcCCCcCcEEcccCCCcccceeEEEEeeC
Q 036387 255 EE----VPVQSR--GFGILDVGYRSQ---DEAWAAGGS--------GVLLKTTNGGKTWIREKAADNIAANLYSVKFINE 317 (334)
Q Consensus 255 ~~----~~~~~~--~~~~~~v~~~~~---~~~~~~G~~--------G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~ 317 (334)
+. +..|.. ....+.+...+. ...+++|.. -.||.-.++|..|.++..-......+++|+|.++
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 21 222221 123455555431 345666653 3689999999999999873234568999999862
Q ss_pred -Ce---EEEE-eCCee
Q 036387 318 -KK---GFVL-GNDGV 328 (334)
Q Consensus 318 -~~---~~a~-G~~G~ 328 (334)
|+ ++|+ ..+|+
T Consensus 235 ~Gr~y~~lAvA~kDgv 250 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDGV 250 (361)
T ss_pred cCCceeeEEEeecCcE
Confidence 22 3443 46663
No 125
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=24.72 E-value=1.3e+02 Score=18.41 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=14.9
Q ss_pred EEEEeeCCeEEEEeCCeeEEEEc
Q 036387 311 SVKFINEKKGFVLGNDGVLLQYL 333 (334)
Q Consensus 311 ~i~~~~~~~~~a~G~~G~il~s~ 333 (334)
+++. .++++|+.+.+|.++..+
T Consensus 16 ~~~v-~~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 16 SPAV-AGGRVYVGTGDGNLYALD 37 (40)
T ss_dssp --EE-CTSEEEEE-TTSEEEEEE
T ss_pred CCEE-ECCEEEEEcCCCEEEEEe
Confidence 3444 478999999999988754
No 126
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=24.62 E-value=6.7e+02 Score=24.56 Aligned_cols=62 Identities=15% Similarity=0.309 Sum_probs=38.4
Q ss_pred eeEEEEeecCCeEEEEeCCCcEEEEcCCCcCcEEcc----cCCC-cccceeEEEEeeCCeEEEEeCCeeEEEE
Q 036387 265 GILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREK----AADN-IAANLYSVKFINEKKGFVLGNDGVLLQY 332 (334)
Q Consensus 265 ~~~~v~~~~~~~~~~~G~~G~i~~S~DgG~tW~~~~----~~~~-~~~~l~~i~~~~~~~~~a~G~~G~il~s 332 (334)
.++-++...+.++++.|..-.-++ -|..-. ...+ -...+|++.+.++|.-++.|..-.++|.
T Consensus 411 ~VYqvawsaDsRLlVS~SkDsTLK------vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~l 477 (480)
T KOG0271|consen 411 AVYQVAWSADSRLLVSGSKDSTLK------VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRL 477 (480)
T ss_pred eeEEEEeccCccEEEEcCCCceEE------EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEe
Confidence 466777777777777765432221 243321 1111 1246999999999999998877666653
No 127
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=24.49 E-value=5.7e+02 Score=23.71 Aligned_cols=100 Identities=11% Similarity=0.222 Sum_probs=50.9
Q ss_pred eeEeecCCEEEEEcCCeEEEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeC-CCcE-EEEcCCCcCcEEcccC
Q 036387 225 MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-SGVL-LKTTNGGKTWIREKAA 302 (334)
Q Consensus 225 ~~~~~~g~~~~~~~~g~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~-~G~i-~~S~DgG~tW~~~~~~ 302 (334)
+.+.|+|...++++.......-|.-+ .+.+....-.+-...+.+.+++.+|.... .|.+ ..|-- +=+++..-
T Consensus 112 i~wsp~g~~~~~~~kdD~it~id~r~---~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp---sLkpv~si 185 (313)
T KOG1407|consen 112 ITWSPDGEYIAVGNKDDRITFIDART---YKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP---SLKPVQSI 185 (313)
T ss_pred EEEcCCCCEEEEecCcccEEEEEecc---cceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc---cccccccc
Confidence 44567777666665554444444432 12221111112234555556666655433 2433 12211 12222211
Q ss_pred CCcccceeEEEEeeCCeEEEEeCCeeEE
Q 036387 303 DNIAANLYSVKFINEKKGFVLGNDGVLL 330 (334)
Q Consensus 303 ~~~~~~l~~i~~~~~~~~~a~G~~G~il 330 (334)
..-+.+.+.|.|.+.|+-||+|..-.+.
T Consensus 186 ~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred ccCCcceEEEEECCCCceEeecccccee
Confidence 1113689999999999999999765543
No 128
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=23.42 E-value=6.3e+02 Score=23.81 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=54.3
Q ss_pred EeeeeEeecCCEEE-EEcCCeEEEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeC-C--CcEEEEc-C-CCcC
Q 036387 222 IQNMGWRADGGLWL-LVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGG-S--GVLLKTT-N-GGKT 295 (334)
Q Consensus 222 i~~~~~~~~g~~~~-~~~~g~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~-~--G~i~~S~-D-gG~t 295 (334)
|..+.+..|.+.++ +..+|.+..= |.=.+-.-..+++|. .-++..+|.+.+..+++|. + -.||... + .-..
T Consensus 58 i~~~~ws~Dsr~ivSaSqDGklIvW-Ds~TtnK~haipl~s--~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~ 134 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQDGKLIVW-DSFTTNKVHAIPLPS--SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN 134 (343)
T ss_pred eeeeEecCCcCeEEeeccCCeEEEE-EcccccceeEEecCc--eeEEEEEECCCCCeEEecCcCceeEEEeccccccccc
Confidence 44556666665443 3445543321 111110123345554 3578889988888888865 3 3465443 2 2222
Q ss_pred cEEcccCCCcccceeEEEEeeCCeEEEEeCCee
Q 036387 296 WIREKAADNIAANLYSVKFINEKKGFVLGNDGV 328 (334)
Q Consensus 296 W~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~ 328 (334)
=+....-.+-..++....|.++++++....+.+
T Consensus 135 ~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~T 167 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMT 167 (343)
T ss_pred ceeeeeecCccceeEEEEEcCCCceEecCCCce
Confidence 222211112246888999999888876544443
No 129
>PTZ00420 coronin; Provisional
Probab=23.38 E-value=8.3e+02 Score=25.17 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=17.2
Q ss_pred eeeEEEEEecCCCCEEEEEEcCCeE
Q 036387 115 VVLLDIAFVPDDLNHGFLLGTRQTL 139 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG~~g~i 139 (334)
..+.+|+|.|.+++.+..++.+|.|
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtI 99 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTI 99 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeE
Confidence 5799999988545555555667764
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.16 E-value=6.5e+02 Score=23.89 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=59.4
Q ss_pred EeeeeEeecCCEEEEEc-CC--eEEEecCCCcceeeEeccccCCCeeeEEEEeecC--CeEEEEe-CCCc--EEE----E
Q 036387 222 IQNMGWRADGGLWLLVR-GG--GLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQ--DEAWAAG-GSGV--LLK----T 289 (334)
Q Consensus 222 i~~~~~~~~g~~~~~~~-~g--~i~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~--~~~~~~G-~~G~--i~~----S 289 (334)
|..+.|...|+-.++.. ++ .||.++++-.+|.-+.- -......+..|...++ ++++++- -++. ||. +
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~-Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSS-WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeee-EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 34455555666555432 22 47876655556632221 1111124666665543 4455542 2332 232 2
Q ss_pred cC-CCcCcEEcccCCCcccceeEEEEeeCCe---EEEEeCCeeEEEEc
Q 036387 290 TN-GGKTWIREKAADNIAANLYSVKFINEKK---GFVLGNDGVLLQYL 333 (334)
Q Consensus 290 ~D-gG~tW~~~~~~~~~~~~l~~i~~~~~~~---~~a~G~~G~il~s~ 333 (334)
.+ .|..|.+..+-......+++|.|.+... +-+++.+|++-.++
T Consensus 95 ~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE 142 (361)
T KOG2445|consen 95 EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE 142 (361)
T ss_pred cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence 23 3678988766333457899999987433 44678888776553
No 131
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=23.05 E-value=98 Score=18.48 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=12.0
Q ss_pred CeEEEEeCCeeEEEEc
Q 036387 318 KKGFVLGNDGVLLQYL 333 (334)
Q Consensus 318 ~~~~a~G~~G~il~s~ 333 (334)
+.+|+++.+|.++.=.
T Consensus 1 ~~VWav~~~G~v~~R~ 16 (32)
T PF06462_consen 1 DQVWAVTSDGSVYFRT 16 (32)
T ss_pred CeEEEEcCCCCEEEEC
Confidence 4688999888877543
No 132
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.92 E-value=3.7e+02 Score=26.23 Aligned_cols=86 Identities=14% Similarity=0.200 Sum_probs=48.7
Q ss_pred eeEeecCCEEEEEcCCeEEEecCCCcceeeEecc----ccCCCeeeEEEEeecCCeEEEE-eCC-CcEEEEcCCCcCcEE
Q 036387 225 MGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVP----VQSRGFGILDVGYRSQDEAWAA-GGS-GVLLKTTNGGKTWIR 298 (334)
Q Consensus 225 ~~~~~~g~~~~~~~~g~i~~S~D~G~tW~w~~~~----~~~~~~~~~~v~~~~~~~~~~~-G~~-G~i~~S~DgG~tW~~ 298 (334)
+++..+|..++++...+.+|- |+|.... .......+-+++|.++++.++. |.+ ..|| +.+.|.-|+.
T Consensus 150 vaf~~~gs~latgg~dg~lRv------~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW-~~~~g~~~a~ 222 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRV------WEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVW-SVNTGAALAR 222 (398)
T ss_pred EEEcCCCCEeeeccccceEEE------EecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEE-EeccCchhhh
Confidence 556667777776643333433 3343332 1112235789999888865543 443 4554 5566777877
Q ss_pred cccCCCcccceeEEEEeeCC
Q 036387 299 EKAADNIAANLYSVKFINEK 318 (334)
Q Consensus 299 ~~~~~~~~~~l~~i~~~~~~ 318 (334)
...- .....+..+.|..++
T Consensus 223 ~t~~-~k~~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 223 KTPF-SKDEMFSSCRFSVDN 241 (398)
T ss_pred cCCc-ccchhhhhceecccC
Confidence 7531 223556677777666
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.83 E-value=6e+02 Score=23.37 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=55.9
Q ss_pred cceEEecCCCCCcEEcccCCCCCeeeEEEEEecCC--CCEEEEE-EcCCe--EEEEcCCCcCeEeCcCCCCcccCcceeE
Q 036387 92 EQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDD--LNHGFLL-GTRQT--LLETKDGGKTWAPRSIPSAEEEDFNYRF 166 (334)
Q Consensus 92 g~i~~S~DgG~tW~~~~~p~~~~~~l~~I~~~p~d--~~~~~av-G~~g~--i~~S~DgG~TW~~~~~p~~~~~~~~~~~ 166 (334)
.+|++=+++ +|.....-......+++|+..|.. +..-+|. +++|. |+...-.+..|+...+-...+ .+
T Consensus 187 VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~-----~~ 259 (299)
T KOG1332|consen 187 VKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD-----VV 259 (299)
T ss_pred eeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc-----ce
Confidence 568876665 897654222223577889887743 3333443 44564 444444568998765433211 46
Q ss_pred EEEEEeC-CeEEEE-EcCC--EEEEEcCCCCCeEEeec
Q 036387 167 NSISFKG-KEGWIV-GKPA--ILLHTSDAGESWERIPL 200 (334)
Q Consensus 167 ~~I~~~~-~~~~~v-G~~g--~i~~S~DgG~TW~~~~~ 200 (334)
.++...- ..+.++ |... .++|-.-.| .|+++..
T Consensus 260 w~vSWS~sGn~LaVs~GdNkvtlwke~~~G-kw~~v~~ 296 (299)
T KOG1332|consen 260 WRVSWSLSGNILAVSGGDNKVTLWKENVDG-KWEEVGE 296 (299)
T ss_pred EEEEEeccccEEEEecCCcEEEEEEeCCCC-cEEEccc
Confidence 6777663 445554 3222 555543333 5988763
No 134
>PLN00177 sulfite oxidase; Provisional
Probab=22.77 E-value=81 Score=30.82 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=13.7
Q ss_pred EEEEcCCCcCeEeCcC
Q 036387 139 LLETKDGGKTWAPRSI 154 (334)
Q Consensus 139 i~~S~DgG~TW~~~~~ 154 (334)
+-.|.|||+||+...+
T Consensus 301 VEVS~DgG~tW~~A~l 316 (393)
T PLN00177 301 VDISVDGGKTWVEASR 316 (393)
T ss_pred EEEEcCCCCCceeeee
Confidence 6779999999998764
No 135
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=22.76 E-value=7.6e+02 Score=24.53 Aligned_cols=156 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred EeCcCCCCcccCcceeEEEEEEeCCeEEEEEcC----------CEEEEEcCCCCCeEEeecCCCCCCCcccccccCcccc
Q 036387 150 APRSIPSAEEEDFNYRFNSISFKGKEGWIVGKP----------AILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVA 219 (334)
Q Consensus 150 ~~~~~p~~~~~~~~~~~~~I~~~~~~~~~vG~~----------g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~ 219 (334)
+.+..+...+.++......+...-+++++.|.. +-||+-.-.-.+|+.+. .|..+.--..|.
T Consensus 55 ~~~e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~----spn~P~pRsshq---- 126 (521)
T KOG1230|consen 55 HVVETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVV----SPNAPPPRSSHQ---- 126 (521)
T ss_pred eeeeccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEec----cCCCcCCCccce----
Q ss_pred ceEeeeeEeecCCEEEEEc------CCeEEEecCCCcce-------eeEec-----cccCCCeeeEEEEeecCCeEEEEe
Q 036387 220 RRIQNMGWRADGGLWLLVR------GGGLFLSKGTGITE-------EFEEV-----PVQSRGFGILDVGYRSQDEAWAAG 281 (334)
Q Consensus 220 ~~i~~~~~~~~g~~~~~~~------~g~i~~S~D~G~tW-------~w~~~-----~~~~~~~~~~~v~~~~~~~~~~~G 281 (334)
++..+.+.+|+.+. .-++++-.| .| +|+++ +.+.+++.+.+- .+.+++.|
T Consensus 127 -----~va~~s~~l~~fGGEfaSPnq~qF~HYkD---~W~fd~~trkweql~~~g~PS~RSGHRMvaw----K~~lilFG 194 (521)
T KOG1230|consen 127 -----AVAVPSNILWLFGGEFASPNQEQFHHYKD---LWLFDLKTRKWEQLEFGGGPSPRSGHRMVAW----KRQLILFG 194 (521)
T ss_pred -----eEEeccCeEEEeccccCCcchhhhhhhhh---eeeeeeccchheeeccCCCCCCCccceeEEe----eeeEEEEc
Q ss_pred C----------CCcEEEEcCCCcCcEEcccCC--CcccceeEEEEeeCCeEEEEeC
Q 036387 282 G----------SGVLLKTTNGGKTWIREKAAD--NIAANLYSVKFINEKKGFVLGN 325 (334)
Q Consensus 282 ~----------~G~i~~S~DgG~tW~~~~~~~--~~~~~l~~i~~~~~~~~~a~G~ 325 (334)
. ...||.-.=.--+|+.+..+. +.++.=..+...+++.+|+-|.
T Consensus 195 GFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 195 GFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred ceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
No 136
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=22.55 E-value=8.1e+02 Score=24.78 Aligned_cols=20 Identities=45% Similarity=0.626 Sum_probs=17.0
Q ss_pred EcCCeEEEEcCCCcCeEeCc
Q 036387 134 GTRQTLLETKDGGKTWAPRS 153 (334)
Q Consensus 134 G~~g~i~~S~DgG~TW~~~~ 153 (334)
|+.|.||.++|+|++++++.
T Consensus 203 GtrGklWis~d~g~tFeK~v 222 (668)
T COG4946 203 GTRGKLWISSDGGKTFEKFV 222 (668)
T ss_pred CccceEEEEecCCcceeeee
Confidence 35688999999999999864
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=21.87 E-value=5.4e+02 Score=26.16 Aligned_cols=128 Identities=13% Similarity=0.217 Sum_probs=66.4
Q ss_pred EEEEEcCCCCCeEEeecCCCCCCCcccccccC------ccccceEeeeeEeecCCEEEEEc-CCeEEEecCCCcceeeEe
Q 036387 184 ILLHTSDAGESWERIPLSSQLPGDMAFWQPHN------RAVARRIQNMGWRADGGLWLLVR-GGGLFLSKGTGITEEFEE 256 (334)
Q Consensus 184 ~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~------~~~~~~i~~~~~~~~g~~~~~~~-~g~i~~S~D~G~tW~w~~ 256 (334)
-|-.|.||-+-|+-= ++....-|+-.. -.....|..+++++.+..++++. ++.+..-.-.+. +-..
T Consensus 556 cIdis~dGtklWTGG-----lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp--~kyq 628 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGG-----LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--EKYQ 628 (705)
T ss_pred eEEecCCCceeecCC-----CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc--ccee
Confidence 466778887777631 222222332111 01233566677788777666663 444332221221 1122
Q ss_pred ccccCCCeeeEEEEeecCCeEEEE-eCCC--cEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeC
Q 036387 257 VPVQSRGFGILDVGYRSQDEAWAA-GGSG--VLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN 325 (334)
Q Consensus 257 ~~~~~~~~~~~~v~~~~~~~~~~~-G~~G--~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~ 325 (334)
+... ...++.+.|..-+..|+. |.+. ..|++.=|-+-+|.-. ...+.+..++.+++.+++|.
T Consensus 629 lhlh--eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-----~SsVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 629 LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-----SSSVLSCDISFDDKYIVTGS 693 (705)
T ss_pred eccc--ccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-----cCcceeeeeccCceEEEecC
Confidence 2222 247889998877887775 3333 2355554433333322 35677777766666665553
No 138
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=21.84 E-value=3.2e+02 Score=31.85 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=60.5
Q ss_pred ceEeeeeEeecCCEEEEEcCCeE-EEecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeCCCcEEEE-------cC
Q 036387 220 RRIQNMGWRADGGLWLLVRGGGL-FLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKT-------TN 291 (334)
Q Consensus 220 ~~i~~~~~~~~g~~~~~~~~g~i-~~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~S-------~D 291 (334)
+.|+.+++..+...+++...|.+ ++..++ . -.++..+.-...+-+++.+....+|+....|.+|+= ..
T Consensus 703 ~~i~a~Avv~~~~fvald~qg~lt~h~k~g-~---p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~ 778 (1774)
T PF11725_consen 703 RVITAFAVVNDNKFVALDDQGDLTAHQKPG-R---PVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNA 778 (1774)
T ss_pred CcceeEEEEcCCceEEeccCCccccccCCC-C---CccCCCCCCCcchhheeeccccceeEecCCCceeecCHHHhhCcc
Confidence 34555555444455555555544 233333 1 122222211124567777667789998888877653 34
Q ss_pred CC----cCcEEcccCCCcccceeEEEEeeCCeEEEEeCCe
Q 036387 292 GG----KTWIREKAADNIAANLYSVKFINEKKGFVLGNDG 327 (334)
Q Consensus 292 gG----~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G 327 (334)
.| ..|+++..| ....+-++....++++.+.-++|
T Consensus 779 ~~~~~~~~W~~v~lP--~~~~v~~l~~~~~~~l~~~~~d~ 816 (1774)
T PF11725_consen 779 EGDQMAAKWQKVALP--DEQPVKSLRTNDDNHLSAQIEDG 816 (1774)
T ss_pred cCCccccCceeccCC--CCCchhhhhcCCCCceEEEecCC
Confidence 55 679999985 45677787777777777776664
No 139
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=21.61 E-value=4.9e+02 Score=25.17 Aligned_cols=63 Identities=17% Similarity=0.338 Sum_probs=40.6
Q ss_pred eeEEEEeecCCeEEEEeCC---CcEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeC-CeeEEE
Q 036387 265 GILDVGYRSQDEAWAAGGS---GVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGN-DGVLLQ 331 (334)
Q Consensus 265 ~~~~v~~~~~~~~~~~G~~---G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~-~G~il~ 331 (334)
.++++...+.+.+.+.|.. .-||.+.++- |--.-. +-...+..+.|..+++++|.|+ +|.++-
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--~~~elt--gHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--FAGELT--GHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCc--ceeEec--CCCCceEEEEEccCceEEEecCCCccEEE
Confidence 5788887665555555442 4578877754 333322 2235799999999999999874 555553
No 140
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=21.57 E-value=6.3e+02 Score=23.14 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=42.1
Q ss_pred eeEeecCC-EEEEEc-CCeE--EEecCCCcceeeEe-ccccCCCeeeEEEEeecCC-eEEEEeC-CCc--EEEEcCCCcC
Q 036387 225 MGWRADGG-LWLLVR-GGGL--FLSKGTGITEEFEE-VPVQSRGFGILDVGYRSQD-EAWAAGG-SGV--LLKTTNGGKT 295 (334)
Q Consensus 225 ~~~~~~g~-~~~~~~-~g~i--~~S~D~G~tW~w~~-~~~~~~~~~~~~v~~~~~~-~~~~~G~-~G~--i~~S~DgG~t 295 (334)
+.+.+++. +|++.. .+.| |.-.+.|+ ++... ...+. ....+.+.+++ .+|++.. .+. +|.....|..
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~~~~~~~---~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~ 115 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAAESPLPG---SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP 115 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEeeeecCCC---CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC
Confidence 45567776 455443 3444 44433443 21111 12221 23456666555 4565542 343 3444434544
Q ss_pred cEEcccCCCcccceeEEEEeeCCe-EEEEe
Q 036387 296 WIREKAADNIAANLYSVKFINEKK-GFVLG 324 (334)
Q Consensus 296 W~~~~~~~~~~~~l~~i~~~~~~~-~~a~G 324 (334)
.+.+... ......+.+++.++++ +|++.
T Consensus 116 ~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 116 VAPIQII-EGLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred CCceeec-cCCCcccEeEeCCCCCEEEEee
Confidence 4433321 1113456666776554 44444
No 141
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=21.13 E-value=7.4e+02 Score=26.57 Aligned_cols=91 Identities=9% Similarity=0.125 Sum_probs=49.0
Q ss_pred eeeeEeecCCEEEEE-cCCeEEEecCCC--------cceeeEeccccCCCeeeEEEEeecCCe-EEEEeCCCcEEEEcCC
Q 036387 223 QNMGWRADGGLWLLV-RGGGLFLSKGTG--------ITEEFEEVPVQSRGFGILDVGYRSQDE-AWAAGGSGVLLKTTNG 292 (334)
Q Consensus 223 ~~~~~~~~g~~~~~~-~~g~i~~S~D~G--------~tW~w~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~S~Dg 292 (334)
+...+++.++..+++ .+|+|+.=.|-| ..|.|..- .+.++.|..++. +|-.|..|.+.+=.++
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-------~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD-------EVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc-------ccceeEEecCCceEeecccceEEEEEeec
Confidence 334556666665554 357777666655 22334421 245666765554 4444556765332222
Q ss_pred CcCcEEcccCCCcccceeEEEEeeCCeEEEE
Q 036387 293 GKTWIREKAADNIAANLYSVKFINEKKGFVL 323 (334)
Q Consensus 293 G~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~ 323 (334)
=.. ++. .| ...+.+..+.+++++..|++
T Consensus 282 T~~-kqf-LP-RLgs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 282 TGK-KQF-LP-RLGSPILHIVVSPDSDLYSL 309 (792)
T ss_pred CCC-ccc-cc-ccCCeeEEEEEcCCCCeEEE
Confidence 222 332 11 24578888888888877754
No 142
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=21.06 E-value=84 Score=29.68 Aligned_cols=28 Identities=11% Similarity=0.293 Sum_probs=19.2
Q ss_pred eeEEEecCCCccceEEecCCCCCcEEccc
Q 036387 81 SISLAATTGLYEQPAKSEEALSAWERVYI 109 (334)
Q Consensus 81 g~~~~~g~~~~g~i~~S~DgG~tW~~~~~ 109 (334)
|.+|..++. -..+-.|.|+|+||+....
T Consensus 229 G~A~~g~~~-I~rVEvS~DgG~tW~~A~l 256 (317)
T cd02110 229 GVAWSGGRG-IRRVEVSLDGGRTWQEARL 256 (317)
T ss_pred EEEEcCCCC-EEEEEEEeCCCCcceEeEc
Confidence 444544332 2467889999999998765
No 143
>COG4409 NanH Neuraminidase (sialidase) [Carbohydrate transport and metabolism]
Probab=20.72 E-value=1.8e+02 Score=30.52 Aligned_cols=105 Identities=18% Similarity=0.298 Sum_probs=50.0
Q ss_pred cceEEecCCCCCcEEcccCCCCC---eeeEEEEEecCCCCEEEEEEcCC--eEEEEcCCCcCeEeCcC-CCCcccCccee
Q 036387 92 EQPAKSEEALSAWERVYIPVDPG---VVLLDIAFVPDDLNHGFLLGTRQ--TLLETKDGGKTWAPRSI-PSAEEEDFNYR 165 (334)
Q Consensus 92 g~i~~S~DgG~tW~~~~~p~~~~---~~l~~I~~~p~d~~~~~avG~~g--~i~~S~DgG~TW~~~~~-p~~~~~~~~~~ 165 (334)
-....|+|+|+.|+.-..|.... ..+.-+...+ +-...+..-..+ ....+.|+|++|..... +..........
T Consensus 545 ~~~~~sDd~~~~sq~sv~~i~~~~~saeaa~vel~~-~~~~~f~Rt~~~~~~Y~~skd~G~tWs~~~y~~~~~n~~~gt~ 623 (728)
T COG4409 545 LYNKLSDDGGANSQVSVTPIPSSTQSAEAAMVELSK-GKIQAFGRTDQGKIAYRTSKDGGETWSVDKYFSYGGNVSYGTQ 623 (728)
T ss_pred cceeeecCCCCcceeeeeecCccccchhHHHHHhcc-chhhhhhhhcccceeEEEeccCCeeeehhhhccccCCccceee
Confidence 44667899999998654433210 0111111110 111223223334 46778999999985431 11100011224
Q ss_pred EEEEEEe---C-CeEEEEEcC--------C----EEEEEcCCCCCeEE
Q 036387 166 FNSISFK---G-KEGWIVGKP--------A----ILLHTSDAGESWER 197 (334)
Q Consensus 166 ~~~I~~~---~-~~~~~vG~~--------g----~i~~S~DgG~TW~~ 197 (334)
+.+|... | ++++++..+ | ++..+.|.+..|.-
T Consensus 624 ~Ssis~~~~~D~~~av~~~~pn~~~g~~~g~~~Lglin~~d~~~~wky 671 (728)
T COG4409 624 YSSISYRQLGDGEHAVIVSTPNGNIGGKDGRYRLGLINSSDNPIDWKY 671 (728)
T ss_pred eeeeeeeccCCcceEEEEecCCCCcccccceEEeeeeeccCCcceeee
Confidence 5566532 4 566665321 1 44555666666654
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=20.50 E-value=1e+03 Score=25.03 Aligned_cols=193 Identities=18% Similarity=0.198 Sum_probs=93.5
Q ss_pred eeeEEEEEecCCCCEEEEEE-cCCeEEEEcCCCc---CeEeCcCCCCcccCcceeEEEEEEeC-CeEEEEEcCCEEEEEc
Q 036387 115 VVLLDIAFVPDDLNHGFLLG-TRQTLLETKDGGK---TWAPRSIPSAEEEDFNYRFNSISFKG-KEGWIVGKPAILLHTS 189 (334)
Q Consensus 115 ~~l~~I~~~p~d~~~~~avG-~~g~i~~S~DgG~---TW~~~~~p~~~~~~~~~~~~~I~~~~-~~~~~vG~~g~i~~S~ 189 (334)
..+.+|+..|. ++..++| ++|.++. .++|- +... .++... -++.++.+++ ..-.+.|...++.+--
T Consensus 111 g~IWsiai~p~--~~~l~IgcddGvl~~-~s~~p~~I~~~r-~l~rq~-----sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 111 GAIWSIAINPE--NTILAIGCDDGVLYD-FSIGPDKITYKR-SLMRQK-----SRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred cceeEEEeCCc--cceEEeecCCceEEE-EecCCceEEEEe-eccccc-----ceEEEEEecCCccEEEecccCceEEEE
Confidence 67788888753 5677777 6775332 33221 2222 122211 1566777775 4445666655555655
Q ss_pred CC--CCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCCeE-EEecCCCcceeeEeccccCCCeee
Q 036387 190 DA--GESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGL-FLSKGTGITEEFEEVPVQSRGFGI 266 (334)
Q Consensus 190 Dg--G~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i-~~S~D~G~tW~w~~~~~~~~~~~~ 266 (334)
|. |.+=..+.. ++.+-. ..-..-+..+.+..++.+......|.| |+-.+.|. --+....- ...+
T Consensus 182 d~~~~~t~~~~~~--~~d~l~-------k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT--LiqS~~~h--~adV 248 (691)
T KOG2048|consen 182 DVKSGQTLHIITM--QLDRLS-------KREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT--LIQSHSCH--DADV 248 (691)
T ss_pred EcCCCceEEEeee--cccccc-------cCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc--hhhhhhhh--hcce
Confidence 53 222221111 111100 000001122333445555444444443 22222221 00111111 1245
Q ss_pred EEEEeec-CCeEEEEeCCCcE--EEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeCCeeEE
Q 036387 267 LDVGYRS-QDEAWAAGGSGVL--LKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLL 330 (334)
Q Consensus 267 ~~v~~~~-~~~~~~~G~~G~i--~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il 330 (334)
++++-.+ .+.++.+|-++.+ |+.+-.++.|......+.-...+.+++..+ ..++..|.++.+.
T Consensus 249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~-~~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE-NALISGGRDFTLA 314 (691)
T ss_pred eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec-ceEEecceeeEEE
Confidence 6666544 4778888888865 334444445998876444456788888775 4677777777654
No 145
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=20.41 E-value=9.2e+02 Score=24.56 Aligned_cols=136 Identities=13% Similarity=0.210 Sum_probs=77.9
Q ss_pred EEEEEEeC-C-eEEEEEcCCEEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEeecCCEEEEEcCCeEE
Q 036387 166 FNSISFKG-K-EGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLF 243 (334)
Q Consensus 166 ~~~I~~~~-~-~~~~vG~~g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i~ 243 (334)
+..++.++ + ...-+|+...+-.-.|.---|+++...+ ...+.|.+.| +++++...+.+
T Consensus 371 lwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~-------------------~~~~~fhpsg-~va~Gt~~G~w 430 (626)
T KOG2106|consen 371 LWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDP-------------------AECADFHPSG-VVAVGTATGRW 430 (626)
T ss_pred eeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCc-------------------eeEeeccCcc-eEEEeeccceE
Confidence 45555554 3 3444577664444447777899876431 1224445555 44444322222
Q ss_pred EecCCCcceeeEeccccCCCeeeEEEEeecCCeEEEEeCC-C--cEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeE
Q 036387 244 LSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGS-G--VLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKG 320 (334)
Q Consensus 244 ~S~D~G~tW~w~~~~~~~~~~~~~~v~~~~~~~~~~~G~~-G--~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~ 320 (334)
.--|-.. -.-+.+......+..+.|.+++..+|+|.. + .||+-.++|..-.++..- ..+++..+.++.+++.
T Consensus 431 ~V~d~e~---~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 431 FVLDTET---QDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SGSPITHLDWSSDSQF 505 (626)
T ss_pred EEEeccc---ceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cCceeEEeeecCCCce
Confidence 2222211 011112111235778899888988998874 3 467778889999988763 2278999999877654
Q ss_pred EEEeCCe
Q 036387 321 FVLGNDG 327 (334)
Q Consensus 321 ~a~G~~G 327 (334)
+.++.|
T Consensus 506 -~~~~S~ 511 (626)
T KOG2106|consen 506 -LVSNSG 511 (626)
T ss_pred -EEeccC
Confidence 455554
No 146
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=20.24 E-value=85 Score=30.35 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=18.7
Q ss_pred eeEEEecCCCccceEEecCCCCCcEEccc
Q 036387 81 SISLAATTGLYEQPAKSEEALSAWERVYI 109 (334)
Q Consensus 81 g~~~~~g~~~~g~i~~S~DgG~tW~~~~~ 109 (334)
|.+|..+.. -..+-.|.|+|+||+....
T Consensus 281 G~A~~G~~~-I~rVEVS~DgG~tW~~A~l 308 (367)
T cd02114 281 GIAFDGGSG-IRRVDVSADGGDSWTQATL 308 (367)
T ss_pred EEEEcCCCC-EEEEEEEeCCCCcceEeEe
Confidence 444543322 2457779999999998764
Done!