Your job contains 1 sequence.
>036389
YIHVIFSTNVPKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQV
AISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEM
ASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHKRMSFIPLRRHITCL
NCYQYWASTNPEIRVLPI
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036389
(198 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064195 - symbol:TFIIS "transcript elongation ... 295 4.0e-26 1
TAIR|locus:2124097 - symbol:AT4G18720 species:3702 "Arabi... 218 5.8e-18 1
TAIR|locus:2052351 - symbol:AT2G42730 species:3702 "Arabi... 220 4.7e-17 1
UNIPROTKB|E7ER40 - symbol:PHF3 "PHD finger protein 3" spe... 163 7.6e-11 1
UNIPROTKB|E7EVH3 - symbol:PHF3 "PHD finger protein 3" spe... 163 1.0e-10 1
FB|FBgn0030663 - symbol:CG8117 species:7227 "Drosophila m... 148 1.5e-10 1
RGD|1304925 - symbol:Phf3 "PHD finger protein 3" species:... 163 2.1e-10 1
UNIPROTKB|Q92576 - symbol:PHF3 "PHD finger protein 3" spe... 163 2.1e-10 1
UNIPROTKB|F1MIT2 - symbol:TCEA1 "Transcription elongation... 148 3.6e-10 1
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 148 4.5e-10 1
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 148 4.6e-10 1
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 148 4.6e-10 1
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 148 4.6e-10 1
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 148 4.6e-10 1
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 148 4.6e-10 1
UNIPROTKB|E2R727 - symbol:PHF3 "Uncharacterized protein" ... 159 5.7e-10 1
UNIPROTKB|G5E5M1 - symbol:PHF3 "Uncharacterized protein" ... 157 9.2e-10 1
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 145 1.1e-09 1
ZFIN|ZDB-GENE-090313-207 - symbol:phf3 "PHD finger protei... 155 1.2e-09 1
UNIPROTKB|E1BVY1 - symbol:PHF3 "Uncharacterized protein" ... 154 2.0e-09 1
TAIR|locus:2179419 - symbol:AT5G25520 species:3702 "Arabi... 147 4.7e-09 1
UNIPROTKB|E2R336 - symbol:SPOCD1 "Uncharacterized protein... 145 5.0e-09 1
CGD|CAL0002729 - symbol:orf19.4537 species:5476 "Candida ... 143 6.9e-09 1
TAIR|locus:2050311 - symbol:AT2G25640 species:3702 "Arabi... 135 1.3e-08 2
UNIPROTKB|F1NFF0 - symbol:Gga.41084 "Uncharacterized prot... 146 1.5e-08 1
UNIPROTKB|F1NGH5 - symbol:Gga.41084 "Uncharacterized prot... 146 1.6e-08 1
ASPGD|ASPL0000075205 - symbol:AN4861 species:162425 "Emer... 141 1.7e-08 1
UNIPROTKB|E1BCR2 - symbol:DIDO1 "Uncharacterized protein"... 145 1.9e-08 1
MGI|MGI:1344352 - symbol:Dido1 "death inducer-obliterator... 145 2.0e-08 1
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 140 2.8e-08 1
TAIR|locus:504954948 - symbol:AT5G42325 species:3702 "Ara... 137 3.8e-08 1
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 139 4.2e-08 1
UNIPROTKB|I3LFG3 - symbol:SPOCD1 "Uncharacterized protein... 135 6.4e-08 1
UNIPROTKB|H0YF46 - symbol:SPOCD1 "SPOC domain-containing ... 136 7.8e-08 1
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 137 9.1e-08 1
UNIPROTKB|F1NP36 - symbol:TCEA1 "Uncharacterized protein"... 137 9.9e-08 1
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 136 9.9e-08 1
UNIPROTKB|F1NP37 - symbol:TCEA1 "Uncharacterized protein"... 136 1.1e-07 1
WB|WBGene00012000 - symbol:T24H10.1 species:6239 "Caenorh... 134 2.8e-07 1
UNIPROTKB|F1MG39 - symbol:F1MG39 "Uncharacterized protein... 139 3.6e-07 1
ZFIN|ZDB-GENE-030131-6117 - symbol:dido1 "death inducer-o... 141 3.9e-07 1
UNIPROTKB|E9PPM7 - symbol:SPOCD1 "SPOC domain-containing ... 136 5.1e-07 1
UNIPROTKB|F1PLS2 - symbol:DIDO1 "Uncharacterized protein"... 138 7.0e-07 1
UNIPROTKB|Q6ZMY3 - symbol:SPOCD1 "SPOC domain-containing ... 136 1.1e-06 1
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 131 1.3e-06 1
UNIPROTKB|G1K224 - symbol:TCEA2 "Transcription elongation... 129 1.4e-06 1
UNIPROTKB|F1SV96 - symbol:SPOCD1 "Uncharacterized protein... 135 1.6e-06 1
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 128 2.0e-06 1
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 128 2.5e-06 1
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 127 3.4e-06 1
UNIPROTKB|Q9BTC0 - symbol:DIDO1 "Death-inducer obliterato... 134 4.6e-06 1
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 122 6.7e-06 1
TAIR|locus:2144211 - symbol:AT5G11430 species:3702 "Arabi... 128 8.7e-06 2
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 122 1.1e-05 1
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 122 1.1e-05 1
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 122 1.2e-05 1
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 121 1.5e-05 1
FB|FBgn0082831 - symbol:pps "protein partner of snf" spec... 129 2.0e-05 1
UNIPROTKB|I3L6H4 - symbol:I3L6H4 "Uncharacterized protein... 101 2.7e-05 1
UNIPROTKB|F1LWI4 - symbol:F1LWI4 "Uncharacterized protein... 114 2.8e-05 1
ASPGD|ASPL0000042794 - symbol:AN1777 species:162425 "Emer... 123 4.6e-05 1
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 114 9.3e-05 1
RGD|1560989 - symbol:Spocd1 "SPOC domain containing 1" sp... 119 0.00012 1
UNIPROTKB|F1M109 - symbol:F1M109 "Uncharacterized protein... 114 0.00014 1
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 111 0.00035 1
UNIPROTKB|O75764 - symbol:TCEA3 "Transcription elongation... 111 0.00035 1
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 111 0.00036 1
POMBASE|SPCC645.13 - symbol:SPCC645.13 "transcription elo... 113 0.00059 1
UNIPROTKB|E2RIY6 - symbol:TCEA3 "Uncharacterized protein"... 108 0.00081 1
>TAIR|locus:2064195 [details] [associations]
symbol:TFIIS "transcript elongation factor IIS"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003746 "translation elongation factor
activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0010162 "seed
dormancy process" evidence=RCA;IMP] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=IMP;RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IMP] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0009739 GO:GO:0009845
GO:GO:0003746 GO:GO:0009910 EMBL:AC005499 GO:GO:0010162
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0034243 Gene3D:1.20.930.10
SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 HSSP:P23193
OMA:LEIWKKV UniGene:At.13130 EMBL:AY150517 EMBL:AK117557
IPI:IPI00532116 PIR:E84806 RefSeq:NP_181390.1
ProteinModelPortal:Q9ZVH8 SMR:Q9ZVH8 IntAct:Q9ZVH8 STRING:Q9ZVH8
PRIDE:Q9ZVH8 EnsemblPlants:AT2G38560.1 GeneID:818438
KEGG:ath:AT2G38560 TAIR:At2g38560 InParanoid:Q9ZVH8
PhylomeDB:Q9ZVH8 ProtClustDB:CLSN2683212 Genevestigator:Q9ZVH8
Uniprot:Q9ZVH8
Length = 378
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 66/186 (35%), Positives = 112/186 (60%)
Query: 11 PKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYE 70
PK + ++KCND +R+ +R+ L AL +V+ EA D + V A +P++VA+S+ES M+E
Sbjct: 198 PKLTAMLKCNDPVRDKIRELLVEALCRVAGEA--DDYERESVNASDPLRVAVSVESLMFE 255
Query: 71 KWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYE 130
K GRS+ K KYR ++FN D N + R++VL G++ PE ++ ++A++MASDK + E
Sbjct: 256 KLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRK--QE 313
Query: 131 NSR-KGRAETNGRIFSGLVSPKNIVYGICKCSRCGHKRMSFI---------PLRRHITCL 180
N++ K +A + GL + + KC RCG ++ ++ P+ ++TC+
Sbjct: 314 NNQIKEKALFDCE--RGLAAKASTDQ--FKCGRCGQRKCTYYQMQTRSADEPMTTYVTCV 369
Query: 181 NCYQYW 186
NC +W
Sbjct: 370 NCDNHW 375
>TAIR|locus:2124097 [details] [associations]
symbol:AT4G18720 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF07500 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00509 SMART:SM00510 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 EMBL:AL161549 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 EMBL:AL035526
UniGene:At.22875 HOGENOM:HOG000195015 KO:K03145 IPI:IPI00529744
PIR:T04864 RefSeq:NP_193607.1 ProteinModelPortal:Q9SN41 SMR:Q9SN41
EnsemblPlants:AT4G18720.1 GeneID:827606 KEGG:ath:AT4G18720
TAIR:At4g18720 eggNOG:KOG1105 InParanoid:Q9SN41 PhylomeDB:Q9SN41
ProtClustDB:CLSN2685449 ArrayExpress:Q9SN41 Genevestigator:Q9SN41
Uniprot:Q9SN41
Length = 266
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 50/128 (39%), Positives = 74/128 (57%)
Query: 7 STNVPKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMES 66
+ +P + + K D R+ VR+ L +L+KV+ E D + +V AC+P VA+S+E+
Sbjct: 101 AVKIPTHATMKKTGDSKRDKVREILQTSLAKVASEVV-DTEMKTRVTACDPWVVAVSVET 159
Query: 67 AMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQ 126
AM+E G K KYR +LFN D N + R+KVLLG++ E +V M +EM S
Sbjct: 160 AMFENLGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGSS--- 216
Query: 127 LWYENSRK 134
WY NSR+
Sbjct: 217 -WYTNSRR 223
>TAIR|locus:2052351 [details] [associations]
symbol:AT2G42730 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001810 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF00646 Pfam:PF07500
PROSITE:PS50181 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 SUPFAM:SSF81383 InterPro:IPR006566
SMART:SM00579 Gene3D:1.10.472.30 SUPFAM:SSF46942 InterPro:IPR027191
PANTHER:PTHR32555 InterPro:IPR013101 Pfam:PF07723 IPI:IPI00519130
RefSeq:NP_181801.1 UniGene:At.36975 ProteinModelPortal:F4IP72
SMR:F4IP72 PRIDE:F4IP72 EnsemblPlants:AT2G42730.1 GeneID:818873
KEGG:ath:AT2G42730 Uniprot:F4IP72
Length = 737
Score = 220 (82.5 bits), Expect = 4.7e-17, P = 4.7e-17
Identities = 49/117 (41%), Positives = 72/117 (61%)
Query: 10 VPKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMY 69
+P S + K D R+ VR+ L +L KV+ E D + +V AC+P VA+S+ESAM+
Sbjct: 593 IPTHSTMKKTGDSKRDKVREILQTSLVKVASEIV-DTEMKTRVTACDPSVVAVSVESAMF 651
Query: 70 EKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQ 126
EK G +K KYR +LFN D N + R+KVL+G++ E +V M +EM S+K+Q
Sbjct: 652 EKLGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQ 708
>UNIPROTKB|E7ER40 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00966918
ProteinModelPortal:E7ER40 SMR:E7ER40 Ensembl:ENST00000515594
ArrayExpress:E7ER40 Bgee:E7ER40 Uniprot:E7ER40
Length = 861
Score = 163 (62.4 bits), Expect = 7.6e-11, P = 7.6e-11
Identities = 45/132 (34%), Positives = 68/132 (51%)
Query: 9 NV-PKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNV-IDQVKACNPIQVAISMES 66
NV P AS D IR+ VR +L L K D N+ + + KA +VA +E
Sbjct: 181 NVHPAASASKPSADQIRQSVRHSLKDILMK----RLTDSNLKVPEEKAA---KVATKIEK 233
Query: 67 AMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQ 126
++ + + YK KYR L+FN DPKN+ KKVL G+V P+ ++ M+ +E+AS ++
Sbjct: 234 ELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELA 293
Query: 127 LWYENSRKGRAE 138
W + E
Sbjct: 294 AWRRRENRHTIE 305
>UNIPROTKB|E7EVH3 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00984758
ProteinModelPortal:E7EVH3 SMR:E7EVH3 Ensembl:ENST00000506783
ArrayExpress:E7EVH3 Bgee:E7EVH3 Uniprot:E7EVH3
Length = 1072
Score = 163 (62.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 45/132 (34%), Positives = 68/132 (51%)
Query: 9 NV-PKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNV-IDQVKACNPIQVAISMES 66
NV P AS D IR+ VR +L L K D N+ + + KA +VA +E
Sbjct: 726 NVHPAASASKPSADQIRQSVRHSLKDILMK----RLTDSNLKVPEEKAA---KVATKIEK 778
Query: 67 AMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQ 126
++ + + YK KYR L+FN DPKN+ KKVL G+V P+ ++ M+ +E+AS ++
Sbjct: 779 ELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELA 838
Query: 127 LWYENSRKGRAE 138
W + E
Sbjct: 839 AWRRRENRHTIE 850
>FB|FBgn0030663 [details] [associations]
symbol:CG8117 species:7227 "Drosophila melanogaster"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017890 Pfam:PF01096 Pfam:PF07500 PIRSF:PIRSF006704
PROSITE:PS51133 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0022008 EMBL:AE014298 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003676 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0032784 eggNOG:COG1594 KO:K03145 HSSP:P23193
GeneTree:ENSGT00390000017794 EMBL:BT022128 EMBL:BT023150
RefSeq:NP_573049.2 UniGene:Dm.26636 SMR:Q9VXS6 IntAct:Q9VXS6
MINT:MINT-861025 STRING:Q9VXS6 EnsemblMetazoa:FBtr0074050
GeneID:32499 KEGG:dme:Dmel_CG8117 UCSC:CG8117-RA
FlyBase:FBgn0030663 InParanoid:Q9VXS6 OMA:PEELGSN OrthoDB:EOG4WSTSW
GenomeRNAi:32499 NextBio:778778 Uniprot:Q9VXS6
Length = 162
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 42/140 (30%), Positives = 62/140 (44%)
Query: 56 NPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNM 115
+P +A +E A+Y YK + R L N DPKN E R+K LLG + PE + M
Sbjct: 28 DPDDMAAKLEDAIYGDLNGCKVKYKNRIRSRLANLRDPKNPELRQKFLLGQITPEELSKM 87
Query: 116 TAKEMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHKRMSFI---- 171
T +EMASD M+ + + + N + + K + KC RC + S +
Sbjct: 88 TPEEMASDDMKQMRQ--KYVQDSINAAQMAKVQGTKTDQF---KCERCDKRNCSQLHIRD 142
Query: 172 ---PLRRHITCLNCYQYWAS 188
P+ + C C W S
Sbjct: 143 GDEPIITFVICDECGNRWKS 162
>RGD|1304925 [details] [associations]
symbol:Phf3 "PHD finger protein 3" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
RGD:1304925 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:CH473965 GeneTree:ENSGT00530000063844 CTD:23469
IPI:IPI00366920 RefSeq:NP_001102261.1 UniGene:Rn.21075
Ensembl:ENSRNOT00000015638 GeneID:363210 KEGG:rno:363210
UCSC:RGD:1304925 OrthoDB:EOG4M91RC NextBio:682838 Uniprot:D3ZKI5
Length = 2020
Score = 163 (62.4 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 45/133 (33%), Positives = 71/133 (53%)
Query: 9 NV-PKASKVVKCN-DCIREIVRKNLYGALSKVSIEAAHDKNV-IDQVKACNPIQVAISME 65
NV P A+ +K + D IR+ VR +L L K D N+ I + K+ +VA +E
Sbjct: 894 NVHPPAAAAIKPSADQIRQSVRHSLKDILMK----RLTDSNLKIPEEKSA---KVATKIE 946
Query: 66 SAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKM 125
++ + + YK KYR L+FN DPKN+ KKVL G+V P+ ++ M+ +E+AS ++
Sbjct: 947 KELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKEL 1006
Query: 126 QLWYENSRKGRAE 138
W + E
Sbjct: 1007 AAWRRRENRHTIE 1019
>UNIPROTKB|Q92576 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=NAS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0007275
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
eggNOG:NOG255142 EMBL:AL050329 EMBL:AL354719 EMBL:AF091622
EMBL:D87685 EMBL:BX648268 EMBL:BC113650 EMBL:BC113652
IPI:IPI00170770 IPI:IPI00847550 RefSeq:NP_055968.1
UniGene:Hs.348921 PDB:2DME PDBsum:2DME ProteinModelPortal:Q92576
SMR:Q92576 IntAct:Q92576 STRING:Q92576 PhosphoSite:Q92576
DMDM:34098662 PaxDb:Q92576 PeptideAtlas:Q92576 PRIDE:Q92576
Ensembl:ENST00000262043 Ensembl:ENST00000393387 GeneID:23469
KEGG:hsa:23469 UCSC:uc003pen.2 CTD:23469 GeneCards:GC06P064403
HGNC:HGNC:8921 HPA:HPA024676 HPA:HPA025763 MIM:607789
neXtProt:NX_Q92576 PharmGKB:PA33261 HOVERGEN:HBG039623
InParanoid:Q92576 OMA:KQNMTTD PhylomeDB:Q92576 ChiTaRS:PHF3
EvolutionaryTrace:Q92576 GenomeRNAi:23469 NextBio:45797
ArrayExpress:Q92576 Bgee:Q92576 CleanEx:HS_PHF3
Genevestigator:Q92576 GermOnline:ENSG00000118482 Uniprot:Q92576
Length = 2039
Score = 163 (62.4 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 45/132 (34%), Positives = 68/132 (51%)
Query: 9 NV-PKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNV-IDQVKACNPIQVAISMES 66
NV P AS D IR+ VR +L L K D N+ + + KA +VA +E
Sbjct: 912 NVHPAASASKPSADQIRQSVRHSLKDILMK----RLTDSNLKVPEEKAA---KVATKIEK 964
Query: 67 AMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQ 126
++ + + YK KYR L+FN DPKN+ KKVL G+V P+ ++ M+ +E+AS ++
Sbjct: 965 ELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELA 1024
Query: 127 LWYENSRKGRAE 138
W + E
Sbjct: 1025 AWRRRENRHTIE 1036
>UNIPROTKB|F1MIT2 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
IPI:IPI00689567 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:DAAA02038289 EMBL:DAAA02038290
Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2
Length = 280
Score = 148 (57.2 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 36/132 (27%), Positives = 59/132 (44%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++ +E A+Y++ + YK + R + N D KN RK VL G++ P+ MTA+
Sbjct: 146 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 205
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ +N K + +G G CK C + R + P+
Sbjct: 206 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 265
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 266 TFVVCNECGNRW 277
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 148 (57.2 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 36/132 (27%), Positives = 59/132 (44%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++ +E A+Y++ + YK + R + N D KN RK VL G++ P+ MTA+
Sbjct: 166 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 225
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ +N K + +G G CK C + R + P+
Sbjct: 226 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 285
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 286 TFVVCNECGNRW 297
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 148 (57.2 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 36/132 (27%), Positives = 59/132 (44%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++ +E A+Y++ + YK + R + N D KN RK VL G++ P+ MTA+
Sbjct: 167 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 226
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ +N K + +G G CK C + R + P+
Sbjct: 227 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 286
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 287 TFVVCNECGNRW 298
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 148 (57.2 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 36/132 (27%), Positives = 59/132 (44%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++ +E A+Y++ + YK + R + N D KN RK VL G++ P+ MTA+
Sbjct: 167 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 226
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ +N K + +G G CK C + R + P+
Sbjct: 227 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 286
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 287 TFVVCNECGNRW 298
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 148 (57.2 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 36/132 (27%), Positives = 59/132 (44%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++ +E A+Y++ + YK + R + N D KN RK VL G++ P+ MTA+
Sbjct: 167 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 226
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ +N K + +G G CK C + R + P+
Sbjct: 227 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 286
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 287 TFVVCNECGNRW 298
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 148 (57.2 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 36/132 (27%), Positives = 59/132 (44%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++ +E A+Y++ + YK + R + N D KN RK VL G++ P+ MTA+
Sbjct: 167 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 226
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ +N K + +G G CK C + R + P+
Sbjct: 227 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 286
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 287 TFVVCNECGNRW 298
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 148 (57.2 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 36/132 (27%), Positives = 59/132 (44%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++ +E A+Y++ + YK + R + N D KN RK VL G++ P+ MTA+
Sbjct: 167 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 226
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ +N K + +G G CK C + R + P+
Sbjct: 227 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 286
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 287 TFVVCNECGNRW 298
>UNIPROTKB|E2R727 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 CTD:23469 OMA:KQNMTTD
EMBL:AAEX03008426 RefSeq:XP_538985.2 Ensembl:ENSCAFT00000003930
GeneID:481864 KEGG:cfa:481864 NextBio:20856589 Uniprot:E2R727
Length = 2043
Score = 159 (61.0 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 42/133 (31%), Positives = 69/133 (51%)
Query: 7 STNVPKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNV-IDQVKACNPIQVAISME 65
+ +VP S D IR+ VR +L L + E+ N+ + + KA +VA +E
Sbjct: 913 NVHVPTTSTSKPSADQIRQSVRHSLKDILMRRLTES----NLKVPEEKAA---KVATKIE 965
Query: 66 SAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKM 125
++ + + YK KYR L+FN DPKN+ KKVL G+V P+ ++ M+ +E+AS ++
Sbjct: 966 KELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKEL 1025
Query: 126 QLWYENSRKGRAE 138
W + E
Sbjct: 1026 AAWRRRENRHTIE 1038
>UNIPROTKB|G5E5M1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:DAAA02024858
EMBL:DAAA02024859 UniGene:Bt.20639 Ensembl:ENSBTAT00000025476
NextBio:20873627 Uniprot:G5E5M1
Length = 2025
Score = 157 (60.3 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 34/113 (30%), Positives = 63/113 (55%)
Query: 27 VRKNLYGALSKVSIEAAHDKNV-IDQVKACNPIQVAISMESAMYEKWGRSSETYKFKYRR 85
+R+++ +L + ++ D N+ + + KA +VA +E ++ + + YK KYR
Sbjct: 919 IRQSVRHSLKDILMKRLTDSNLKVPEEKAA---KVATKIEKELFSFFRDTDAKYKNKYRS 975
Query: 86 LLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAE 138
L+FN DPKN+ KKVL G+V P+ ++ M+ +E+AS ++ W + E
Sbjct: 976 LMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIE 1028
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 145 (56.1 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 36/132 (27%), Positives = 60/132 (45%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++ +E ++ ++ + YK + R + N D KN R+ VL G+V P+ I MTA+
Sbjct: 175 ELGAQIEECIFLEFKNTDMKYKNRVRSRISNLKDAKNPNLRRNVLCGNVSPDRIAKMTAE 234
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ +N K + SG G CK +C + R + P+
Sbjct: 235 EMASDELKEMRKNLTKEAIRDHQVATSGGTQTDLFTCGKCKKKKCTYTQVQTRSADEPMT 294
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 295 TFVFCNECGNRW 306
>ZFIN|ZDB-GENE-090313-207 [details] [associations]
symbol:phf3 "PHD finger protein 3" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
ZFIN:ZDB-GENE-090313-207 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 EMBL:BX005106
IPI:IPI00486005 UniGene:Dr.75445 Ensembl:ENSDART00000043440
Ensembl:ENSDART00000100352 HOGENOM:HOG000213981 OMA:CENNDET
NextBio:20880263 Uniprot:B8A483
Length = 1691
Score = 155 (59.6 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 32/112 (28%), Positives = 62/112 (55%)
Query: 27 VRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSETYKFKYRRL 86
+R+++ +L ++ ++ + + ++ ++ + P +VA E ++ + YK KYR L
Sbjct: 755 IRRSVRDSLEEILLKRSKESDL--KISSDRPAEVARRTEKELFALFQGVDSKYKNKYRSL 812
Query: 87 LFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAE 138
FN D KN+ K+VL G+V P +V MTA+E+AS ++ W + + E
Sbjct: 813 TFNLKDAKNNVLFKRVLKGEVSPADLVRMTAEELASKELAAWRKRENRHTIE 864
>UNIPROTKB|E1BVY1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:AADN02002654
EMBL:AADN02002655 IPI:IPI00602717 Ensembl:ENSGALT00000026230
Uniprot:E1BVY1
Length = 2050
Score = 154 (59.3 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 43/130 (33%), Positives = 70/130 (53%)
Query: 9 NVPKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAM 68
NVP ASK D IR V+++L L K +++ I + +A +VA +E +
Sbjct: 909 NVP-ASK--PSADQIRHSVKQSLKEILMKRLTDSSLK---IPEERAA---KVATRIEREL 959
Query: 69 YEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLW 128
+ + + YK KYR L+FN DPKN+ KKVL G+V P+ ++ M+ +E+AS ++ W
Sbjct: 960 FSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIKMSPEELASKELAAW 1019
Query: 129 YENSRKGRAE 138
+ + E
Sbjct: 1020 RQRENRHTIE 1029
>TAIR|locus:2179419 [details] [associations]
symbol:AT5G25520 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 EMBL:CP002688 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
IPI:IPI00526909 RefSeq:NP_974833.1 UniGene:At.43475
ProteinModelPortal:F4JWU1 SMR:F4JWU1 PRIDE:F4JWU1
EnsemblPlants:AT5G25520.2 GeneID:832627 KEGG:ath:AT5G25520
OMA:HEHEESP PhylomeDB:F4JWU1 Uniprot:F4JWU1
Length = 997
Score = 147 (56.8 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 56 NPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNM 115
+P +A +E +++ +G ++ YK K R LLFN D N E R+ V+ G + PE + NM
Sbjct: 359 DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNM 418
Query: 116 TAKEMASDKMQLWYENSRKGRAE 138
TA+E+AS ++ W + + AE
Sbjct: 419 TAEELASKELSQWRQAKAEEMAE 441
>UNIPROTKB|E2R336 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010923 "negative regulation of phosphatase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 Ensembl:ENSCAFT00000017200
Uniprot:E2R336
Length = 718
Score = 145 (56.1 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKE 119
+A +E+A++ +S YK KYR LLFN DP+N + KV+ GDV PE +V M++ +
Sbjct: 136 IAAGIETALFNLTQTTSCRYKTKYRSLLFNLRDPRNPDLFLKVVRGDVTPEDLVQMSSIQ 195
Query: 120 MASDKMQLWYENSRK 134
+A ++ W + K
Sbjct: 196 LAPQELACWRDQEEK 210
>CGD|CAL0002729 [details] [associations]
symbol:orf19.4537 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0001139 "core RNA polymerase II
recruiting transcription factor activity" evidence=IEA] [GO:0000993
"RNA polymerase II core binding" evidence=IEA] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 CGD:CAL0002729 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
KO:K03145 TIGRFAMs:TIGR01385 EMBL:AACQ01000143 EMBL:AACQ01000140
RefSeq:XP_712868.1 RefSeq:XP_712962.1 ProteinModelPortal:Q59T94
SMR:Q59T94 STRING:Q59T94 GeneID:3645430 GeneID:3645524
KEGG:cal:CaO19.12012 KEGG:cal:CaO19.4537 Uniprot:Q59T94
Length = 305
Score = 143 (55.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 43/173 (24%), Positives = 76/173 (43%)
Query: 27 VRKNLY-GALSKVSIEAAHDKNVIDQVKACNPI-QVAISMESAMYE-KWGRSSETYKFKY 83
V LY S+ A + +D+ + I ++AI +E+ +Y+ ++ + S++Y+ +
Sbjct: 136 VNTQLYENDTRNASVSALYTSLAVDRDDSPKHILRIAIEIEAEVYKSEYSKVSDSYRNRL 195
Query: 84 RRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRA-ETNGR 142
R N + KN E R+++L + P + MT EMA + ++ E K + G
Sbjct: 196 RSFTMNLRNKKNPELRERILSKQILPAAFIKMTPNEMAPEALKKEIEKLHKQNLFDAQG- 254
Query: 143 IFSGLVSPKNIVYGICKCSRCGHKRMSFI---------PLRRHITCLNCYQYW 186
+ K V C +C HK++S+ PL TC NC W
Sbjct: 255 -----ATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTCENCGNRW 302
>TAIR|locus:2050311 [details] [associations]
symbol:AT2G25640 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017890 Pfam:PF07500
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 EMBL:CP002685
GO:GO:0008270 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 IPI:IPI00531004
RefSeq:NP_180135.2 UniGene:At.38993 ProteinModelPortal:F4ISL5
SMR:F4ISL5 PRIDE:F4ISL5 EnsemblPlants:AT2G25640.1 GeneID:817105
KEGG:ath:AT2G25640 OMA:IGAMAND Uniprot:F4ISL5
Length = 745
Score = 135 (52.6 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 28/83 (33%), Positives = 52/83 (62%)
Query: 56 NPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNM 115
+P +A +E+ +++ +G ++ YK K R LLFN D N + R+KV+ G++ E + +M
Sbjct: 315 DPQVLAFEIETELFKLFGGVNKKYKEKGRSLLFNLKDKSNPKLREKVMYGEIAAERLCSM 374
Query: 116 TAKEMASDKMQLWYENSRKGRAE 138
+A+E+AS ++ W R+ +AE
Sbjct: 375 SAEELASKELAEW----RQAKAE 393
Score = 52 (23.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 23 IREIVRKNLYGALSKVS--IEAAHDKNVIDQVKACNPIQVAIS 63
+R +R++L GAL+ V ++ ++ ++D NP++ +S
Sbjct: 157 VRSKMRESLAGALAMVQCQMDVPNESKMLDSETVANPLEGHVS 199
>UNIPROTKB|F1NFF0 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:AADN02019222 EMBL:AADN02019223
IPI:IPI00821338 Ensembl:ENSGALT00000039659 ArrayExpress:F1NFF0
Uniprot:F1NFF0
Length = 2253
Score = 146 (56.5 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 32/114 (28%), Positives = 62/114 (54%)
Query: 27 VRKNLYGALSKVSIEAAHDKNVIDQVKACNPI-QVAISMESAMYEKWGRSSETYKFKYRR 85
+R+N+ +L ++ + +D + D V + + +VA+++E M+ + + YK KYR
Sbjct: 691 IRQNIRRSLKEILWKRVNDSD--DLVMTESEVGKVALNIEKEMFNLFHVTDNRYKSKYRS 748
Query: 86 LLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAET 139
++FN DPKN +VL G++ +V M +E+ S ++ +W E K E+
Sbjct: 749 IMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPEELLSKELSVWKEKPAKAVIES 802
>UNIPROTKB|F1NGH5 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AADN02019222 EMBL:AADN02019223 IPI:IPI00577866
Ensembl:ENSGALT00000009066 ArrayExpress:F1NGH5 Uniprot:F1NGH5
Length = 2287
Score = 146 (56.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 32/114 (28%), Positives = 62/114 (54%)
Query: 27 VRKNLYGALSKVSIEAAHDKNVIDQVKACNPI-QVAISMESAMYEKWGRSSETYKFKYRR 85
+R+N+ +L ++ + +D + D V + + +VA+++E M+ + + YK KYR
Sbjct: 691 IRQNIRRSLKEILWKRVNDSD--DLVMTESEVGKVALNIEKEMFNLFHVTDNRYKSKYRS 748
Query: 86 LLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAET 139
++FN DPKN +VL G++ +V M +E+ S ++ +W E K E+
Sbjct: 749 IMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPEELLSKELSVWKEKPAKAVIES 802
>ASPGD|ASPL0000075205 [details] [associations]
symbol:AN4861 species:162425 "Emericella nidulans"
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0001139 "core RNA
polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0000993 "RNA polymerase II core binding"
evidence=IEA] [GO:0001012 "RNA polymerase II regulatory region DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 EMBL:BN001303 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
HOGENOM:HOG000195015 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EnsemblFungi:CADANIAT00005544 Uniprot:C8V9V9
Length = 304
Score = 141 (54.7 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 36/136 (26%), Positives = 66/136 (48%)
Query: 61 AISMESAMYEKWG-RSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKE 119
A ++E+A Y+ +G + E Y+ K R L N + N R +VL +V PE V MT +E
Sbjct: 172 AAAVEAAAYDAYGPETKEPYRTKIRSLFQNLKNKSNPTLRVRVLSNEVTPERFVKMTHEE 231
Query: 120 MASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHKRMSFI-------- 171
+ SD+ + E RK + E + + + + +C +CG +++++
Sbjct: 232 LRSDEQR---EKDRKIQKENMDKAM--VAQAERSISTSLQCGKCGQRKVTYTEAQTRSAD 286
Query: 172 -PLRRHITCLNCYQYW 186
P+ TC++C + W
Sbjct: 287 EPMTLFCTCMHCGKSW 302
>UNIPROTKB|E1BCR2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:DAAA02036239 IPI:IPI00971510 RefSeq:XP_003586878.1
UniGene:Bt.14503 Ensembl:ENSBTAT00000007879 GeneID:519826
KEGG:bta:519826 Uniprot:E1BCR2
Length = 2196
Score = 145 (56.1 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 32/125 (25%), Positives = 65/125 (52%)
Query: 27 VRKNLYGALSKVSIEAAHDKNVIDQVKACNPI-QVAISMESAMYEKWGRSSETYKFKYRR 85
+R+N+ +L ++ + +D + D + N + ++A+ +E M+ + + YK KYR
Sbjct: 672 IRQNIRRSLKEILWKRVNDSD--DLIMTENEVGKIALLIEKEMFNLFRVTDNRYKSKYRS 729
Query: 86 LLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFS 145
L+FN DPKN +VL ++ +V M +E+ S ++ +W E + K E+ ++ +
Sbjct: 730 LMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSVWRERTTKPVMESRTKLHN 789
Query: 146 GLVSP 150
P
Sbjct: 790 ETKKP 794
>MGI|MGI:1344352 [details] [associations]
symbol:Dido1 "death inducer-obliterator 1" species:10090
"Mus musculus" [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 MGI:MGI:1344352 GO:GO:0005737
GO:GO:0006915 GO:GO:0005654 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 eggNOG:NOG255142 HOVERGEN:HBG060199
OMA:PNRMCAD EMBL:AJ238332 EMBL:AY425951 EMBL:AY425952 EMBL:AK129117
EMBL:AK032843 EMBL:AK042474 EMBL:AK044919 EMBL:AL732560
EMBL:BC029110 EMBL:BC044755 EMBL:BC096662 EMBL:BC138712
EMBL:BC138713 IPI:IPI00227469 IPI:IPI00453851 IPI:IPI00828403
RefSeq:NP_035935.2 RefSeq:NP_780760.2 RefSeq:NP_808520.2
UniGene:Mm.253836 UniGene:Mm.490825 PDB:1WEM PDBsum:1WEM
ProteinModelPortal:Q8C9B9 SMR:Q8C9B9 STRING:Q8C9B9
PhosphoSite:Q8C9B9 PaxDb:Q8C9B9 PRIDE:Q8C9B9
Ensembl:ENSMUST00000037764 Ensembl:ENSMUST00000087517
Ensembl:ENSMUST00000103055 Ensembl:ENSMUST00000103056
Ensembl:ENSMUST00000103057 Ensembl:ENSMUST00000130986 GeneID:23856
KEGG:mmu:23856 UCSC:uc008ojq.1 UCSC:uc008ojr.1 UCSC:uc008oju.1
GeneTree:ENSGT00530000063844 InParanoid:Q8C9B9
EvolutionaryTrace:Q8C9B9 NextBio:303557 Bgee:Q8C9B9
CleanEx:MM_DIDO1 CleanEx:MM_DIO1 Genevestigator:Q8C9B9
Uniprot:Q8C9B9
Length = 2256
Score = 145 (56.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 33/127 (25%), Positives = 66/127 (51%)
Query: 27 VRKNLYGALSKVSIEAAHDKNVIDQVKACNPI-QVAISMESAMYEKWGRSSETYKFKYRR 85
+R+N+ +L ++ + +D + D + N + ++A+ +E M+ + + YK KYR
Sbjct: 667 IRQNIRRSLKEILWKRVNDSD--DLIMTENEVGKIALHIEKEMFNLFQVTDNRYKSKYRS 724
Query: 86 LLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFS 145
++FN DPKN +VL ++ +V M +E+ S ++ +W E K E+ ++ +
Sbjct: 725 IMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSMWTEKPTKSVIESRTKLLN 784
Query: 146 GLVSPKN 152
S KN
Sbjct: 785 E--SKKN 789
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 140 (54.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 48/174 (27%), Positives = 72/174 (41%)
Query: 17 VKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSS 76
V C D +R R+ L AL + HD I C +A +E ++ G +
Sbjct: 134 VTC-DAVRTKCREMLTAAL-----QTDHDHVAIGADCEC----LAGQIEECIFRDVGNTD 183
Query: 77 ETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGR 136
YK + R L N D KN R+KVL G + P+ I MT++EMASD+++ + K
Sbjct: 184 MKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEA 243
Query: 137 AETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLRRHITCLNCYQYW 186
+ +G G C+ C + R S P+ + C C W
Sbjct: 244 IREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 297
>TAIR|locus:504954948 [details] [associations]
symbol:AT5G42325 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 EMBL:CP002688
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
KO:K03145 IPI:IPI00542827 RefSeq:NP_680377.1 UniGene:At.65714
ProteinModelPortal:F4K1I5 SMR:F4K1I5 PRIDE:F4K1I5
EnsemblPlants:AT5G42325.1 GeneID:834238 KEGG:ath:AT5G42325
OMA:SADMIMT PhylomeDB:F4K1I5 Uniprot:F4K1I5
Length = 233
Score = 137 (53.3 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 38/117 (32%), Positives = 59/117 (50%)
Query: 10 VPKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMY 69
+P S + K D R+ V + L +L+KV+ E + + C+P VA+S+ESAM
Sbjct: 103 IPTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM- 161
Query: 70 EKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQ 126
+LFN D N + R+KVL+G++ E +V M EM S+K+Q
Sbjct: 162 ---------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQ 203
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 139 (54.0 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 36/131 (27%), Positives = 60/131 (45%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKE 119
+A +E +Y+++ + YK + R + N D KN + R+ VL G++ PE I +MTA+E
Sbjct: 168 MAAQIEDYIYQEFKSTDMKYKTRLRSRISNLKDQKNPDLRRNVLCGNISPERIASMTAEE 227
Query: 120 MASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLRR 175
MAS +++ + K + G V G CK C + R + P+
Sbjct: 228 MASPELKEIRKALTKESIREHQLSKVGGTETDMFVCGKCKGKNCTYTQVQTRSADEPMTT 287
Query: 176 HITCLNCYQYW 186
+ C C W
Sbjct: 288 FVLCNECGNRW 298
>UNIPROTKB|I3LFG3 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
EMBL:CU861549 Ensembl:ENSSSCT00000023384 Uniprot:I3LFG3
Length = 222
Score = 135 (52.6 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKE 119
+A +E+A+++ ++ Y+ KYR LLFN DP+N + KV+ GDV P+ +V M + +
Sbjct: 24 LAAGIEAALFDLTHATNGHYRTKYRSLLFNLRDPRNPDLFLKVIHGDVTPQGLVRMNSVQ 83
Query: 120 MASDKMQLWYENSRK 134
+A ++ W + K
Sbjct: 84 LAPQELARWRDQEEK 98
>UNIPROTKB|H0YF46 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
SUPFAM:SSF46942 HGNC:HGNC:26338 ChiTaRS:SPOCD1
Ensembl:ENST00000528579 Uniprot:H0YF46
Length = 255
Score = 136 (52.9 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKE 119
+A +E+A+++ ++ YK KYR LLFN DP+N + KV+ GDV P +V M++ +
Sbjct: 56 IAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQ 115
Query: 120 MASDKMQLWYENSRK 134
+A ++ W + K
Sbjct: 116 LAPQELARWRDQEEK 130
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 137 (53.3 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 46/174 (26%), Positives = 71/174 (40%)
Query: 17 VKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSS 76
V C D +R R+ L AL + HD I C + I E ++ G +
Sbjct: 133 VTC-DAVRNKCREMLTAAL-----QTDHDHVAIGA--DCERLSAQI--EECIFRDVGNTD 182
Query: 77 ETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGR 136
YK + R + N D KN + R+ VL G + P+ I MT++EMASD+++ + K
Sbjct: 183 MKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEA 242
Query: 137 AETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLRRHITCLNCYQYW 186
+ +G G C+ C + R S P+ + C C W
Sbjct: 243 IREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>UNIPROTKB|F1NP36 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:AADN02021697 EMBL:AADN02021698 IPI:IPI00598591
Ensembl:ENSGALT00000024655 ArrayExpress:F1NP36 Uniprot:F1NP36
Length = 309
Score = 137 (53.3 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 45/183 (24%), Positives = 77/183 (42%)
Query: 10 VPKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNVI--DQVKACNPIQVAISMESA 67
+P + +D +R R+ L AL D I D+ + + I+ A ++
Sbjct: 132 IPSFPRAPSTSDSVRVKCREMLSAAL-----RTGDDYIAIGADEEELGSQIEEA---KAP 183
Query: 68 MYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQL 127
++++ + YK + R + N D KN RK VL G++ P+ MTA+EMASD+++
Sbjct: 184 IFQELKNTDMKYKNRVRSRIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKE 243
Query: 128 WYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLRRHITCLNCY 183
+N K + +G G CK C + R + P+ + C C
Sbjct: 244 MRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECG 303
Query: 184 QYW 186
W
Sbjct: 304 NRW 306
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 136 (52.9 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 45/174 (25%), Positives = 71/174 (40%)
Query: 17 VKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSS 76
V C D +R R+ L AL + HD + C + I E ++ G +
Sbjct: 110 VTC-DAVRNKCREMLTAAL-----QTDHDHMAVGA--DCEGLSAQI--EECIFRDVGNTD 159
Query: 77 ETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGR 136
YK + R + N D KN + R+ VL G + P+ I MT++EMASD+++ + K
Sbjct: 160 MKYKNRVRSRISNLKDAKNPDLRRNVLCGVITPQQIAVMTSEEMASDELKEIRKAMTKEA 219
Query: 137 AETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLRRHITCLNCYQYW 186
+ +G G C+ C + R S P+ + C C W
Sbjct: 220 IREHQMARTGGTQTDLFTCGRCRRKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 273
>UNIPROTKB|F1NP37 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AADN02021697 EMBL:AADN02021698
IPI:IPI00575645 Ensembl:ENSGALT00000024654 ArrayExpress:F1NP37
Uniprot:F1NP37
Length = 280
Score = 136 (52.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 33/128 (25%), Positives = 57/128 (44%)
Query: 63 SMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMAS 122
++ + ++++ + YK + R + N D KN RK VL G++ P+ MTA+EMAS
Sbjct: 150 TIHTPIFQELKNTDMKYKNRVRSRIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMAS 209
Query: 123 DKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLRRHIT 178
D+++ +N K + +G G CK C + R + P+ +
Sbjct: 210 DELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVV 269
Query: 179 CLNCYQYW 186
C C W
Sbjct: 270 CNECGNRW 277
>WB|WBGene00012000 [details] [associations]
symbol:T24H10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:Z54216 PIR:T25250
RefSeq:NP_495941.1 UniGene:Cel.14290 ProteinModelPortal:P52652
SMR:P52652 STRING:P52652 PaxDb:P52652 EnsemblMetazoa:T24H10.1
GeneID:174450 KEGG:cel:CELE_T24H10.1 UCSC:T24H10.1 CTD:174450
WormBase:T24H10.1 InParanoid:P52652 OMA:KTNIGIK NextBio:884086
Uniprot:P52652
Length = 308
Score = 134 (52.2 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 36/141 (25%), Positives = 67/141 (47%)
Query: 56 NPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNM 115
+P ++A+ +E +Y ++++Y R +FN D KN R+ VL G V+ E M
Sbjct: 171 DPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATM 230
Query: 116 TAKEMASDKMQLWYEN-SRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHKRMSFI--- 171
T++EMAS +++ + +++ E + G +P ++ KC +CG K ++
Sbjct: 231 TSEEMASAEIREMRDKFTKEAILEHQMSVQQG--TPSDMF----KCGKCGKKNCTYTQLQ 284
Query: 172 ------PLRRHITCLNCYQYW 186
P+ + CL C W
Sbjct: 285 TRSSDEPMTTFVFCLECGNRW 305
>UNIPROTKB|F1MG39 [details] [associations]
symbol:F1MG39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:DAAA02006249 EMBL:DAAA02006250 IPI:IPI00693396
Ensembl:ENSBTAT00000055584 Uniprot:F1MG39
Length = 1150
Score = 139 (54.0 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKE 119
+A +E+A++ ++ YK KYR LLFN DP+N E KV+ GD+ P +V M++ +
Sbjct: 574 IAAGIEAALFNLTQATNGRYKTKYRSLLFNLRDPRNPELFLKVVHGDITPHGLVRMSSVQ 633
Query: 120 MASDKMQLWYENSRK 134
+A ++ W + K
Sbjct: 634 LAPQELARWRDQEEK 648
>ZFIN|ZDB-GENE-030131-6117 [details] [associations]
symbol:dido1 "death inducer-obliterator 1"
species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 ZFIN:ZDB-GENE-030131-6117 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:BX296530 EMBL:BX005175
IPI:IPI00971682 Ensembl:ENSDART00000110882 ArrayExpress:F1QQA3
Bgee:F1QQA3 Uniprot:F1QQA3
Length = 2779
Score = 141 (54.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 35/125 (28%), Positives = 66/125 (52%)
Query: 27 VRKNLYGALSKVSIEAAHDKNVIDQVKACNPI-QVAISMESAMYEKWGRSSETYKFKYRR 85
+R N+ +L+ + + D + D + N + ++A+ +E M+ + YK KYR
Sbjct: 761 MRSNIRRSLTDILYKRVSDSD--DLTMSENEVGRLAVGIEKEMFNLCMNTDNKYKNKYRS 818
Query: 86 LLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWY--ENSRKGRAETNGRI 143
L+FN DPKN +V+ G++ P +V ++ +E+ S ++ W E+S K + +GR
Sbjct: 819 LMFNLKDPKNKGLFYRVVGGEISPFRLVRLSPEELLSKELSDWRKSESSEKS-LDKSGRS 877
Query: 144 FSGLV 148
SG +
Sbjct: 878 HSGQI 882
>UNIPROTKB|E9PPM7 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 HGNC:HGNC:26338
ChiTaRS:SPOCD1 IPI:IPI00977290 ProteinModelPortal:E9PPM7 SMR:E9PPM7
Ensembl:ENST00000452755 ArrayExpress:E9PPM7 Bgee:E9PPM7
Uniprot:E9PPM7
Length = 639
Score = 136 (52.9 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKE 119
+A +E+A+++ ++ YK KYR LLFN DP+N + KV+ GDV P +V M++ +
Sbjct: 77 IAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQ 136
Query: 120 MASDKMQLWYENSRK 134
+A ++ W + K
Sbjct: 137 LAPQELARWRDQEEK 151
>UNIPROTKB|F1PLS2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AAEX03014133 Ensembl:ENSCAFT00000020204 Uniprot:F1PLS2
Length = 1518
Score = 138 (53.6 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 30/120 (25%), Positives = 62/120 (51%)
Query: 27 VRKNLYGALSKVSIEAAHDKNVIDQVKACNPI-QVAISMESAMYEKWGRSSETYKFKYRR 85
+R+N+ +L ++ + +D + D + + + ++A+ +E M+ + + YK KYR
Sbjct: 679 IRQNIRRSLKEILWKRVNDSD--DLIMTESEVGKIALHIEKEMFNLFQVTDNRYKSKYRS 736
Query: 86 LLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFS 145
++FN DPKN +VL ++ +V M +E+ S ++ W E K E+ ++ S
Sbjct: 737 IMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSTWRERPTKPVMESRNKLHS 796
>UNIPROTKB|Q6ZMY3 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IDA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 GO:GO:0010923
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
PROSITE:PS50917 EMBL:AK058077 EMBL:AK091016 EMBL:AK096192
EMBL:AK097227 EMBL:AK131447 EMBL:BC039870 EMBL:BC114430
IPI:IPI00478771 IPI:IPI00827924 IPI:IPI00845378 IPI:IPI00845481
IPI:IPI00845517 RefSeq:NP_653170.3 UniGene:Hs.62604
ProteinModelPortal:Q6ZMY3 SMR:Q6ZMY3 IntAct:Q6ZMY3 DMDM:74749560
PaxDb:Q6ZMY3 PRIDE:Q6ZMY3 Ensembl:ENST00000257100
Ensembl:ENST00000360482 Ensembl:ENST00000533231 GeneID:90853
KEGG:hsa:90853 UCSC:uc001bts.1 UCSC:uc001btu.3 UCSC:uc001btv.3
UCSC:uc001btw.1 CTD:90853 GeneCards:GC01M032256 H-InvDB:HIX0018138
HGNC:HGNC:26338 HPA:HPA031713 neXtProt:NX_Q6ZMY3
PharmGKB:PA134930231 eggNOG:NOG280980 InParanoid:Q6ZMY3 OMA:PKDTGSG
PhylomeDB:Q6ZMY3 ChiTaRS:SPOCD1 GenomeRNAi:90853 NextBio:77002
ArrayExpress:Q6ZMY3 Bgee:Q6ZMY3 CleanEx:HS_SPOCD1
Genevestigator:Q6ZMY3 Uniprot:Q6ZMY3
Length = 1216
Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKE 119
+A +E+A+++ ++ YK KYR LLFN DP+N + KV+ GDV P +V M++ +
Sbjct: 640 IAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQ 699
Query: 120 MASDKMQLWYENSRK 134
+A ++ W + K
Sbjct: 700 LAPQELARWRDQEEK 714
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 131 (51.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 47/185 (25%), Positives = 77/185 (41%)
Query: 6 FSTNVPKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISME 65
FS++ S ++ D IR+ + L AL D + D C + I E
Sbjct: 231 FSSSAGPLSPRLQTGDSIRDKCIEMLTAALRT-------DDDYKDYGTNCEAMGAEI--E 281
Query: 66 SAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKM 125
+Y++ + YK + R + N DPKN RK VL G ++ I +MTA+EMASD++
Sbjct: 282 DYIYQETKATDMKYKNRVRSRISNLKDPKNPNLRKNVLAGAIELSRIASMTAEEMASDEL 341
Query: 126 QLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLRRHITCLN 181
+ + + +G + + G CK C + R + P+ + C
Sbjct: 342 KQLRNVLTQEAIREHQMAKTGGTTTDLLQCGKCKKKNCTYNQVQTRSADEPMTTFVLCNE 401
Query: 182 CYQYW 186
C W
Sbjct: 402 CGNRW 406
>UNIPROTKB|G1K224 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005813 "centrosome" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:DAAA02036215
EMBL:DAAA02036214 Ensembl:ENSBTAT00000029107 Uniprot:G1K224
Length = 303
Score = 129 (50.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 48/175 (27%), Positives = 73/175 (41%)
Query: 17 VKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSS 76
V C D +R R+ L AL + HD I C Q+ E +++ G +
Sbjct: 135 VTC-DAVRTKCREMLTAAL-----QTDHDHVAIGADCECLAGQIE---EYILWQGVGFGT 185
Query: 77 ET-YKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKG 135
+ YK + R L N D KN R+KVL G + P+ I MT++EMASD+++ + K
Sbjct: 186 DMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE 245
Query: 136 RAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLRRHITCLNCYQYW 186
+ +G G C+ C + R S P+ + C C W
Sbjct: 246 AIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 300
>UNIPROTKB|F1SV96 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:CU861549 Ensembl:ENSSSCT00000004001 Uniprot:F1SV96
Length = 1168
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKE 119
+A +E+A+++ ++ Y+ KYR LLFN DP+N + KV+ GDV P+ +V M + +
Sbjct: 575 LAAGIEAALFDLTHATNGHYRTKYRSLLFNLRDPRNPDLFLKVIHGDVTPQGLVRMNSVQ 634
Query: 120 MASDKMQLWYENSRK 134
+A ++ W + K
Sbjct: 635 LAPQELARWRDQEEK 649
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 128 (50.1 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 37/141 (26%), Positives = 64/141 (45%)
Query: 53 KACN-PIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPET 111
+ C P ++A +E A+Y ++ + YK + R + N DPKN R + G V +
Sbjct: 172 EGCGEPEEMAAELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQ 231
Query: 112 IVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSR--CGHK--- 166
+ MT +EMASD+M+ E K A + ++ + + K + KC + C +
Sbjct: 232 LAKMTPEEMASDEMKKLREKFVK-EAINDAQLAT-VQGTKTDLLKCAKCKKRNCTYNQLQ 289
Query: 167 -RMSFIPLRRHITCLNCYQYW 186
R + P+ + C C W
Sbjct: 290 TRSADEPMTTFVMCNECGNRW 310
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 128 (50.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 33/132 (25%), Positives = 59/132 (44%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++A +E +Y++ + Y+ + R + N DP+N R+ VL G + PE I MTA+
Sbjct: 214 KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGTISPELIAKMTAE 273
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ + + +G + + CK C + R + P+
Sbjct: 274 EMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMT 333
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 334 TFVLCNECGNRW 345
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 127 (49.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 33/132 (25%), Positives = 59/132 (44%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++A +E +Y++ + Y+ + R + N DP+N R+ VL G + PE I MTA+
Sbjct: 213 KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPELIAKMTAE 272
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ + + +G + + CK C + R + P+
Sbjct: 273 EMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMT 332
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 333 TFVLCNECGNRW 344
>UNIPROTKB|Q9BTC0 [details] [associations]
symbol:DIDO1 "Death-inducer obliterator 1" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0005737 EMBL:CH471077 GO:GO:0006915 Reactome:REACT_115566
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Reactome:REACT_111183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL035669 EMBL:AY481571 EMBL:AY481572 EMBL:AB002331
EMBL:AK002127 EMBL:AL117379 EMBL:BC000770 EMBL:BC004237
EMBL:BC012757 EMBL:BC014489 EMBL:BC137177 EMBL:AL133063
IPI:IPI00183350 IPI:IPI00249982 IPI:IPI00249984 IPI:IPI00619921
RefSeq:NP_001180298.1 RefSeq:NP_001180299.1 RefSeq:NP_071388.2
RefSeq:NP_149072.2 RefSeq:NP_542986.1 RefSeq:NP_542987.2
UniGene:Hs.517172 ProteinModelPortal:Q9BTC0 SMR:Q9BTC0
IntAct:Q9BTC0 STRING:Q9BTC0 PhosphoSite:Q9BTC0 DMDM:116241332
PaxDb:Q9BTC0 PeptideAtlas:Q9BTC0 PRIDE:Q9BTC0 DNASU:11083
Ensembl:ENST00000266070 Ensembl:ENST00000266071
Ensembl:ENST00000354665 Ensembl:ENST00000370366
Ensembl:ENST00000370368 Ensembl:ENST00000370371
Ensembl:ENST00000395335 Ensembl:ENST00000395340
Ensembl:ENST00000395343 GeneID:11083 KEGG:hsa:11083 UCSC:uc002ydr.2
UCSC:uc002ydt.2 UCSC:uc002ydv.2 UCSC:uc011aao.1 CTD:11083
GeneCards:GC20M061510 HGNC:HGNC:2680 HPA:CAB004374 MIM:604140
neXtProt:NX_Q9BTC0 PharmGKB:PA27147 eggNOG:NOG255142
HOVERGEN:HBG060199 InParanoid:Q9BTC0 OMA:PNRMCAD OrthoDB:EOG41ZFCM
ChiTaRS:DIDO1 GenomeRNAi:11083 NextBio:42138 Bgee:Q9BTC0
Genevestigator:Q9BTC0 GermOnline:ENSG00000101191 Uniprot:Q9BTC0
Length = 2240
Score = 134 (52.2 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 28/118 (23%), Positives = 61/118 (51%)
Query: 27 VRKNLYGALSKVSIEAAHDKNVIDQVKACNPI-QVAISMESAMYEKWGRSSETYKFKYRR 85
+R+N+ +L ++ + +D + D + N + ++A+ +E M+ + + YK KYR
Sbjct: 670 IRQNIRRSLKEILWKRVNDSD--DLIMTENEVGKIALHIEKEMFNLFQVTDNRYKSKYRS 727
Query: 86 LLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRI 143
++FN DPKN +VL ++ +V + +E+ S ++ W E + E+ ++
Sbjct: 728 IMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKELSTWKERPARSVMESRTKL 785
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 122 (48.0 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 35/110 (31%), Positives = 53/110 (48%)
Query: 17 VKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSS 76
V C D +R R+ L AL + HD I C + I E ++ G +
Sbjct: 106 VTC-DAVRNKCREMLTAAL-----QTDHDHVAIGA--DCERLSAQI--EECIFRDVGNTD 155
Query: 77 ETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQ 126
YK + R + N D KN + R+ VL G + P+ I MT++EMASD+++
Sbjct: 156 MKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELK 205
>TAIR|locus:2144211 [details] [associations]
symbol:AT5G11430 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
EMBL:CP002688 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 UniGene:At.69010
IPI:IPI00547412 RefSeq:NP_196704.2 UniGene:At.5125 UniGene:At.73156
ProteinModelPortal:F4JXV3 SMR:F4JXV3 PRIDE:F4JXV3
EnsemblPlants:AT5G11430.1 GeneID:831014 KEGG:ath:AT5G11430
OMA:VITQENT Uniprot:F4JXV3
Length = 873
Score = 128 (50.1 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 56 NPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNM 115
+P +A +E +Y+ +G ++ Y+ + R LLFN D N E R++V+ ++ E + +M
Sbjct: 260 DPKLLASKIEMELYKLFGGVNKKYRERGRSLLFNLKDKNNPELRERVMSEEISAERLCSM 319
Query: 116 TAKEMASDKMQLWYENSRKGRAE 138
TA+E+AS ++ W R+ +AE
Sbjct: 320 TAEELASKELSQW----RQAKAE 338
Score = 37 (18.1 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 9 NVPKASKVVKC----NDCIREIVRKNLYGALSKV 38
+VP + VK N+ +R +R++L AL+ V
Sbjct: 93 HVPPPQRSVKAMEEVNESVRSKMRESLASALALV 126
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 122 (48.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 41/174 (23%), Positives = 72/174 (41%)
Query: 17 VKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSS 76
+ C D +R R+ L ++++ HD + +C + I E ++ G +
Sbjct: 133 ITC-DAVRNKCREML-----TLALQTDHDHVAVGV--SCEHLSSQI--EECIFLDVGNTD 182
Query: 77 ETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGR 136
YK + R + N D KN R+ VL G + P+ I MT++EMASD+++ + K
Sbjct: 183 MKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEA 242
Query: 137 AETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLRRHITCLNCYQYW 186
+ +G C+ C + R S P+ ++ C C W
Sbjct: 243 IREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 122 (48.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 41/174 (23%), Positives = 72/174 (41%)
Query: 17 VKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSS 76
+ C D +R R+ L ++++ HD + +C + I E ++ G +
Sbjct: 133 ITC-DAVRNKCREML-----TLALQTDHDHVAVGV--SCEHLSSQI--EECIFLDVGNTD 182
Query: 77 ETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGR 136
YK + R + N D KN R+ VL G + P+ I MT++EMASD+++ + K
Sbjct: 183 MKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEA 242
Query: 137 AETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLRRHITCLNCYQYW 186
+ +G C+ C + R S P+ ++ C C W
Sbjct: 243 IREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 122 (48.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 44/161 (27%), Positives = 68/161 (42%)
Query: 8 TNVPKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESA 67
T P A V C D +R R+ L AL D + I C +A +E
Sbjct: 155 TTFPPAP--VTC-DAVRNKCREMLTTALQA-------DDDYIAIGADCE--HIAAQIEEC 202
Query: 68 MYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQL 127
+Y+ + YK + R + N D KN E +K VL G + PE I MT++EMAS++++
Sbjct: 203 IYQDIKNTDMKYKNRVRSRISNLKDSKNPELKKNVLCGAITPEQIAVMTSEEMASNELKE 262
Query: 128 WYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHKRM 168
+ K + +G G CK C + ++
Sbjct: 263 IRKAMTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQV 303
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 121 (47.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 40/174 (22%), Positives = 72/174 (41%)
Query: 17 VKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSS 76
+ C D +R R+ L ++++ HD + N ++ +E ++ G +
Sbjct: 133 ITC-DAVRNKCREML-----TLALQTDHDHVAV----GVNCEHLSSQIEECIFLDVGNTD 182
Query: 77 ETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGR 136
YK + R + N D KN R+ VL G + P+ I MT++EMASD+++ + K
Sbjct: 183 MKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEA 242
Query: 137 AETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLRRHITCLNCYQYW 186
+ +G C+ C + R S P+ ++ C C W
Sbjct: 243 IREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>FB|FBgn0082831 [details] [associations]
symbol:pps "protein partner of snf" species:7227 "Drosophila
melanogaster" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR006576 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 Pfam:PF07533 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00592 EMBL:AE014297
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 GO:GO:0016817 RefSeq:NP_650193.1
ProteinModelPortal:Q9VG78 SMR:Q9VG78 IntAct:Q9VG78 MINT:MINT-985343
STRING:Q9VG78 PRIDE:Q9VG78 EnsemblMetazoa:FBtr0082586 GeneID:41524
KEGG:dme:Dmel_CG6525 UCSC:CG6525-RA CTD:41524 FlyBase:FBgn0082831
InParanoid:Q9VG78 OrthoDB:EOG4CRJDW PhylomeDB:Q9VG78
GenomeRNAi:41524 NextBio:824247 ArrayExpress:Q9VG78 Bgee:Q9VG78
Uniprot:Q9VG78
Length = 2016
Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 59 QVAISMESAMYEKWGRS-SETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTA 117
Q ++E M+ +GR YK KYR L+FN D KN +K+ V+P +V MT
Sbjct: 1315 QFVKNVELEMFNSFGRDVGAKYKAKYRSLMFNIKDRKNRTLFEKICAKQVEPRQLVRMTP 1374
Query: 118 KEMASDKMQLWYENSRK 134
+++AS ++ W E +
Sbjct: 1375 EQLASQELAKWREEENR 1391
>UNIPROTKB|I3L6H4 [details] [associations]
symbol:I3L6H4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00390000017794
Ensembl:ENSSSCT00000029692 Uniprot:I3L6H4
Length = 111
Score = 101 (40.6 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 66 SAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKM 125
S +Y++ + Y+ + R + N DP+N R+ VL G + I MTA+EMASD++
Sbjct: 9 SHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDEL 68
Query: 126 Q 126
+
Sbjct: 69 R 69
>UNIPROTKB|F1LWI4 [details] [associations]
symbol:F1LWI4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 IPI:IPI00781224
Ensembl:ENSRNOT00000056304 Uniprot:F1LWI4
Length = 190
Score = 114 (45.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKN--HEFRKKVLLGDVKPETIVNMTA 117
+A +E+A++ ++ YK KYR LLFN DP+N + KV DV P+ +V M++
Sbjct: 19 IAEGIEAALFHLTQDTNLRYKSKYRNLLFNLRDPRNPPQDLFLKVAHCDVTPKDLVQMSS 78
Query: 118 KEMASDKMQLWYENSRK 134
++A ++ W + ++
Sbjct: 79 IQLAPKELSRWRDQEKR 95
>ASPGD|ASPL0000042794 [details] [associations]
symbol:AN1777 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 GO:GO:0046872 EMBL:BN001307
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 OrthoDB:EOG4PRX19 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 EMBL:AACD01000028
RefSeq:XP_659381.1 ProteinModelPortal:Q5BCF3
EnsemblFungi:CADANIAT00008424 GeneID:2875165 KEGG:ani:AN1777.2
eggNOG:NOG45011 HOGENOM:HOG000215957 OMA:ERDMICC Uniprot:Q5BCF3
Length = 889
Score = 123 (48.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 38/132 (28%), Positives = 68/132 (51%)
Query: 7 STNVPKASKVVKCNDCIREIVRKNLYGALSKVSIEA-----AHDKNVIDQVKACNPI--Q 59
+ + K ++ D I R+N AL+KV ++ A + + K + Q
Sbjct: 265 AADTTKTERLKTLED-ITNPARRNAASALTKVFVDQISSALAGGSFKMSEGKTGEEVGQQ 323
Query: 60 VAISMESAMYEKW----GRS-SETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVN 114
+ IS+E A+Y+ G + SE YK + R +LFN KN R ++L+G + P+ +
Sbjct: 324 LGISVEEALYQNLMGGGGEATSEAYKIQLRAILFNVK--KNPSLRDRLLVGSLTPDALSR 381
Query: 115 MTAKEMASDKMQ 126
M+++EMAS+++Q
Sbjct: 382 MSSQEMASEELQ 393
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 114 (45.2 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 42/174 (24%), Positives = 72/174 (41%)
Query: 17 VKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSS 76
+ C D +R R+ L ++++ HD + +C + I E + + G S
Sbjct: 107 ITC-DAVRNKCREML-----TLALQTDHDHVAVGV--SCEHLSSQIE-EYILLDLSG-SQ 156
Query: 77 ETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGR 136
YK + R + N D KN R+ VL G + P+ I MT++EMASD+++ + K
Sbjct: 157 IGYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEA 216
Query: 137 AETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLRRHITCLNCYQYW 186
+ +G C+ C + R S P+ ++ C C W
Sbjct: 217 IREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 270
>RGD|1560989 [details] [associations]
symbol:Spocd1 "SPOC domain containing 1" species:10116 "Rattus
norvegicus" [GO:0010923 "negative regulation of phosphatase
activity" evidence=ISO] REFSEQ:XM_003750045 Ncbi:XP_003750093
Length = 768
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKE 119
+A +E+A++ ++ YK KYR LLFN DP+N F K V DV P+ +V M++ +
Sbjct: 193 IAEGIEAALFHLTQDTNLRYKSKYRNLLFNLRDPRNDLFLK-VAHCDVTPKDLVQMSSIQ 251
Query: 120 MASDKMQLWYENSRK 134
+A ++ W + ++
Sbjct: 252 LAPKELSRWRDQEKR 266
>UNIPROTKB|F1M109 [details] [associations]
symbol:F1M109 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 IPI:IPI00366810 Ensembl:ENSRNOT00000031410
Uniprot:F1M109
Length = 330
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKN--HEFRKKVLLGDVKPETIVNMTA 117
+A +E+A++ ++ YK KYR LLFN DP+N + KV DV P+ +V M++
Sbjct: 21 IAEGIEAALFHLTQDTNLRYKSKYRNLLFNLRDPRNPPQDLFLKVAHCDVTPKDLVQMSS 80
Query: 118 KEMASDKMQLWYENSRK 134
++A ++ W + ++
Sbjct: 81 IQLAPKELSRWRDQEKR 97
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 111 (44.1 bits), Expect = 0.00035, P = 0.00035
Identities = 30/131 (22%), Positives = 56/131 (42%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++A +E +Y++ + Y+ + R + N DP+N R+ VL G + I MTA+
Sbjct: 215 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 274
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHKRMSFI---PLRR 175
EMASD+++ + + +G + CK C + ++ P+
Sbjct: 275 EMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRTDEPMTT 334
Query: 176 HITCLNCYQYW 186
+ C C W
Sbjct: 335 FVLCNECGNRW 345
>UNIPROTKB|O75764 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9606 "Homo sapiens" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 EMBL:AL357134
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL109936 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385 CTD:6920
OrthoDB:EOG4NP741 EMBL:AK290272 EMBL:BC041613 EMBL:AJ223473
IPI:IPI00178146 RefSeq:NP_003187.1 UniGene:Hs.446354
ProteinModelPortal:O75764 SMR:O75764 IntAct:O75764 STRING:O75764
PhosphoSite:O75764 PaxDb:O75764 PRIDE:O75764 DNASU:6920
Ensembl:ENST00000450454 GeneID:6920 KEGG:hsa:6920 UCSC:uc021oig.1
GeneCards:GC01M023706 HGNC:HGNC:11615 HPA:HPA044960 MIM:604128
neXtProt:NX_O75764 PharmGKB:PA36374 InParanoid:O75764 OMA:KGLDCSD
ChiTaRS:TCEA3 GenomeRNAi:6920 NextBio:27073 ArrayExpress:O75764
Bgee:O75764 CleanEx:HS_TCEA3 Genevestigator:O75764
GermOnline:ENSG00000204219 Uniprot:O75764
Length = 348
Score = 111 (44.1 bits), Expect = 0.00035, P = 0.00035
Identities = 31/132 (23%), Positives = 56/132 (42%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++A +E +Y++ + Y+ + R + N DP+N R+ VL G + I MTA+
Sbjct: 214 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 273
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ + + +G + CK C + R + P+
Sbjct: 274 EMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMT 333
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 334 TFVLCNECGNRW 345
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 111 (44.1 bits), Expect = 0.00036, P = 0.00036
Identities = 31/132 (23%), Positives = 56/132 (42%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++A +E +Y++ + Y+ + R + N DP+N R+ VL G + I MTA+
Sbjct: 215 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 274
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ + + +G + CK C + R + P+
Sbjct: 275 EMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMT 334
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 335 TFVLCNECGNRW 346
>POMBASE|SPCC645.13 [details] [associations]
symbol:SPCC645.13 "transcription elongation regulator
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISS;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0019787 "small conjugating protein ligase
activity" evidence=ISM] [GO:0034244 "negative regulation of
transcription elongation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
PomBase:SPCC645.13 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0019787
GO:GO:0034244 EMBL:AB027885 EMBL:AB027953 PIR:T41530
RefSeq:NP_588122.1 ProteinModelPortal:Q9Y7V2
EnsemblFungi:SPCC645.13.1 GeneID:2538700 KEGG:spo:SPCC645.13
OMA:ELESSEP OrthoDB:EOG4PRX19 NextBio:20799886 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 Uniprot:Q9Y7V2
Length = 721
Score = 113 (44.8 bits), Expect = 0.00059, P = 0.00059
Identities = 37/137 (27%), Positives = 68/137 (49%)
Query: 23 IREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSE----- 77
+R+ V K K+ IE A + V ++ N +A+ +E M+ +++
Sbjct: 217 VRKSVAKAWVSVFEKI-IEKAKLEGV-QGLEDLNSTSLALQLEHIMFMVLSYTTDHSLTP 274
Query: 78 --TYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKG 135
Y+ K+R L FN D KN FR +VL ++ +VN++++EMA+ ++ E R+
Sbjct: 275 NNKYREKFRALRFNLVDDKNPAFRARVLKNEISFNDLVNLSSEEMANPDLKNLAEEIRQQ 334
Query: 136 RAETNGRIFSGLVSPKN 152
E N I L++P++
Sbjct: 335 STE-NTVIKQHLIAPRD 350
>UNIPROTKB|E2RIY6 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:KGLDCSD EMBL:AAEX03001757
Ensembl:ENSCAFT00000021079 Uniprot:E2RIY6
Length = 348
Score = 108 (43.1 bits), Expect = 0.00081, P = 0.00081
Identities = 31/132 (23%), Positives = 55/132 (41%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++A +E + E+ + Y+ + R + N DP+N R+ VL G + I MTA+
Sbjct: 214 KMASEIEDHILEELKSTDMKYRNRVRSRISNLKDPRNPSLRRNVLSGAISAGLIAKMTAE 273
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK----RMSFIPLR 174
EMASD+++ + + +G + CK C + R + P+
Sbjct: 274 EMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMT 333
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 334 TFVLCNECGNRW 345
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.135 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 198 198 0.00083 111 3 11 22 0.43 32
31 0.45 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 69
No. of states in DFA: 611 (65 KB)
Total size of DFA: 188 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.60u 0.20s 17.80t Elapsed: 00:00:01
Total cpu time: 17.61u 0.20s 17.81t Elapsed: 00:00:01
Start: Sat May 11 14:09:27 2013 End: Sat May 11 14:09:28 2013