BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036389
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
Length = 2039
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 11 PKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYE 70
P AS D IR+ VR +L L K D N+ +V +VA +E ++
Sbjct: 915 PAASASKPSADQIRQSVRHSLKDILMK----RLTDSNL--KVPEEKAAKVATKIEKELFS 968
Query: 71 KWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLW 128
+ + YK KYR L+FN DPKN+ KKVL G+V P+ ++ M+ +E+AS ++ W
Sbjct: 969 FFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAW 1026
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 13/170 (7%)
Query: 21 DCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSETYK 80
D +R R+ L AL + HD I C +A +E ++ G + YK
Sbjct: 137 DAVRTKCREMLTAAL-----QTDHDHVAIGADCEC----LAGQIEECIFRDVGNTDMKYK 187
Query: 81 FKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETN 140
+ R L N D KN R+KVL G + P+ I MT++EMASD+++ + K +
Sbjct: 188 NRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREH 247
Query: 141 GRIFSGLVSPKNIVYGICKCSRCGH----KRMSFIPLRRHITCLNCYQYW 186
+G G C+ C + R S P+ + C C W
Sbjct: 248 QMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 297
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++ +E A+Y++ + YK + R + N D KN RK VL G++ P+ MTA+
Sbjct: 167 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 226
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGH----KRMSFIPLR 174
EMASD+++ +N K + +G G CK C + R + P+
Sbjct: 227 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 286
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 287 TFVVCNECGNRW 298
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++ +E A+Y++ + YK + R + N D KN RK VL G++ P+ MTA+
Sbjct: 167 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 226
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGH----KRMSFIPLR 174
EMASD+++ +N K + +G G CK C + R + P+
Sbjct: 227 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 286
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 287 TFVVCNECGNRW 298
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++ +E A+Y++ + YK + R + N D KN RK VL G++ P+ MTA+
Sbjct: 167 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 226
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGH----KRMSFIPLR 174
EMASD+++ +N K + +G G CK C + R + P+
Sbjct: 227 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 286
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 287 TFVVCNECGNRW 298
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 27 VRKNLYGALSKVSIEAAHDKNVIDQVKACNPI-QVAISMESAMYEKWGRSSETYKFKYRR 85
+R+N+ +L ++ + +D + D + N + ++A+ +E M+ + + YK KYR
Sbjct: 667 IRQNIRRSLKEILWKRVNDSD--DLIMTENEVGKIALHIEKEMFNLFQVTDNRYKSKYRS 724
Query: 86 LLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFS 145
++FN DPKN +VL ++ +V M +E+ S ++ +W E K E+ ++ +
Sbjct: 725 IMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSMWTEKPTKSVIESRTKLLN 784
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++ +E A+Y++ + YK + R + N D KN RK VL G++ P+ MTA+
Sbjct: 167 ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAE 226
Query: 119 EMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGH----KRMSFIPLR 174
EMASD+++ +N K + +G G CK C + R + P+
Sbjct: 227 EMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMT 286
Query: 175 RHITCLNCYQYW 186
+ C C W
Sbjct: 287 TFVVCNECGNRW 298
>sp|Q6ZMY3|SPOC1_HUMAN SPOC domain-containing protein 1 OS=Homo sapiens GN=SPOCD1 PE=2
SV=1
Length = 1216
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKE 119
+A +E+A+++ ++ YK KYR LLFN DP+N + KV+ GDV P +V M++ +
Sbjct: 640 IAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQ 699
Query: 120 MASDKMQLWYENSRK 134
+A ++ W + K
Sbjct: 700 LAPQELARWRDQEEK 714
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 56 NPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNM 115
+P ++A+ +E +Y ++++Y R +FN D KN R+ VL G V+ E M
Sbjct: 171 DPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATM 230
Query: 116 TAKEMASDKMQLWYEN-SRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK-------- 166
T++EMAS +++ + +++ E + G S + KC +CG K
Sbjct: 231 TSEEMASAEIREMRDKFTKEAILEHQMSVQQGTPS------DMFKCGKCGKKNCTYTQLQ 284
Query: 167 -RMSFIPLRRHITCLNCYQYW 186
R S P+ + CL C W
Sbjct: 285 TRSSDEPMTTFVFCLECGNRW 305
>sp|Q6C0K9|BYE1_YARLI Transcription factor BYE1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=BYE1 PE=3 SV=1
Length = 822
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 21 DCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQ----VAISMESAMYEKWG--- 73
D I E VRK+ AL + + K +P Q +A+++E +Y+ +G
Sbjct: 196 DDITEKVRKSAASALKGIFVSVPTSK--YSPGAGVSPEQFCETLALTIEQELYDAYGTVE 253
Query: 74 -RSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENS 132
Y+ K+R L FN D KN R +V+ G V P+T+V M+++EM + ++Q E
Sbjct: 254 PEIGSNYRDKFRTLSFNLRDSKNETLRIRVMTGQVTPQTLVAMSSEEMMNPELQKLAEEV 313
Query: 133 R 133
R
Sbjct: 314 R 314
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 24/142 (16%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++A +E +Y++ + Y+ + R + N DP+N R+ VL G + PE I MTA+
Sbjct: 213 KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPELIAKMTAE 272
Query: 119 EMASDKMQ-----LWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK------- 166
EMASD+++ + E R+ + G + L+ +CS+C K
Sbjct: 273 EMASDELRELRNAMTQEAIREHQMAKTGGTTTDLL----------RCSKCKKKNCTYNQV 322
Query: 167 --RMSFIPLRRHITCLNCYQYW 186
R + P+ + C C W
Sbjct: 323 QTRSADEPMTTFVLCNECGNRW 344
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 13/170 (7%)
Query: 21 DCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSETYK 80
D +R R+ L AL + HD I + +++ +E ++ G + YK
Sbjct: 136 DAVRNKCREMLTAAL-----QTDHDHVAI----GADCERLSAQIEECIFRDVGNTDMKYK 186
Query: 81 FKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETN 140
+ R + N D KN + R+ VL G + P+ I MT++EMASD+++ + K +
Sbjct: 187 NRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREH 246
Query: 141 GRIFSGLVSPKNIVYGICKCSRCGH----KRMSFIPLRRHITCLNCYQYW 186
+G G C+ C + R S P+ + C C W
Sbjct: 247 QMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 27 VRKNLYGALSKVSIEAAHDKNVIDQVKACNPI-QVAISMESAMYEKWGRSSETYKFKYRR 85
+R+N+ +L ++ + +D + D + N + ++A+ +E M+ + + YK KYR
Sbjct: 670 IRQNIRRSLKEILWKRVNDSD--DLIMTENEVGKIALHIEKEMFNLFQVTDNRYKSKYRS 727
Query: 86 LLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRI 143
++FN DPKN +VL ++ +V + +E+ S ++ W E + E+ ++
Sbjct: 728 IMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKELSTWKERPARSVMESRTKL 785
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 57 PIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMT 116
P ++A +E A+Y ++ + YK + R + N DPKN R + G V + + MT
Sbjct: 177 PEEMAAELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMT 236
Query: 117 AKEMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK---------R 167
+EMASD+M+ E K + L + + + KC++C + R
Sbjct: 237 PEEMASDEMKKLREKFVKEAIND-----AQLATVQGTKTDLLKCAKCKKRNCTYNQLQTR 291
Query: 168 MSFIPLRRHITCLNCYQYW 186
+ P+ + C C W
Sbjct: 292 SADEPMTTFVMCNECGNRW 310
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 13/170 (7%)
Query: 21 DCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSETYK 80
D +R R+ L AL + HD + N ++ +E ++ G + YK
Sbjct: 136 DAVRNKCREMLTLAL-----QTDHDHVAV----GVNCEHLSSQIEECIFLDVGNTDMKYK 186
Query: 81 FKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETN 140
+ R + N D KN R+ VL G + P+ I MT++EMASD+++ + K +
Sbjct: 187 NRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREH 246
Query: 141 GRIFSGLVSPKNIVYGICKCSRCGH----KRMSFIPLRRHITCLNCYQYW 186
+G C+ C + R S P+ ++ C C W
Sbjct: 247 QMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Query: 60 VAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKE 119
++ +E ++ G + YK + R + N D KN R+ VL G + P+ I MT++E
Sbjct: 166 LSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEE 225
Query: 120 MASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGH----KRMSFIPLRR 175
MASD+++ + K + +G C+ C + R S P+
Sbjct: 226 MASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTT 285
Query: 176 HITCLNCYQYW 186
++ C C W
Sbjct: 286 YVVCNECGNRW 296
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 24/142 (16%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++A +E +Y++ + Y+ + R + N DP+N R+ VL G + I MTA+
Sbjct: 214 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 273
Query: 119 EMASDKMQ-----LWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK------- 166
EMASD+++ + E R+ + G + L +CS+C K
Sbjct: 274 EMASDELRELRNAMTQEAIREHQMAKTGGTTTDLF----------QCSKCKKKNCTYNQV 323
Query: 167 --RMSFIPLRRHITCLNCYQYW 186
R + P+ + C C W
Sbjct: 324 QTRSADEPMTTFVLCNECGNRW 345
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 24/142 (16%)
Query: 59 QVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAK 118
++A +E +Y++ + Y+ + R + N DP+N R+ VL G + I MTA+
Sbjct: 215 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 274
Query: 119 EMASDKMQ-----LWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK------- 166
EMASD+++ + E R+ + G + L +CS+C K
Sbjct: 275 EMASDELRELRNAMTQEAIREHQMAKTGGTTTDLF----------QCSKCKKKNCTYNQV 324
Query: 167 --RMSFIPLRRHITCLNCYQYW 186
R + P+ + C C W
Sbjct: 325 QTRSADEPMTTFVLCNECGNRW 346
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 73 GRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENS 132
G++ Y+ + R L N D N + R VL ++ P+ + MT+ E+AS E+
Sbjct: 173 GKTGSEYRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSAELAS-------EDR 225
Query: 133 RKGRA--ETNGRIFSGLVSPKNIVYGICKCSRCGHKRMSFI---------PLRRHITCLN 181
RK A E + P+ V + C +C K++S+ P+ C
Sbjct: 226 RKEDAKLEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTV 285
Query: 182 CYQYW 186
C W
Sbjct: 286 CGNRW 290
>sp|Q9Y7V2|BYE1_SCHPO Transcription factor bye1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bye1 PE=3 SV=3
Length = 721
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 12/142 (8%)
Query: 21 DCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKAC---NPIQVAISMESAMYEKWGRSSE 77
D I+ VRK++ A V E +K ++ V+ N +A+ +E M+ +++
Sbjct: 211 DEIQNPVRKSVAKAWVSV-FEKIIEKAKLEGVQGLEDLNSTSLALQLEHIMFMVLSYTTD 269
Query: 78 -------TYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYE 130
Y+ K+R L FN D KN FR +VL ++ +VN++++EMA+ ++ E
Sbjct: 270 HSLTPNNKYREKFRALRFNLVDDKNPAFRARVLKNEISFNDLVNLSSEEMANPDLKNLAE 329
Query: 131 NSRKGRAETNGRIFSGLVSPKN 152
R+ E N I L++P++
Sbjct: 330 EIRQQSTE-NTVIKQHLIAPRD 350
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 29/176 (16%)
Query: 23 IREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYE--KWGRSSETYK 80
+R+ V K LY L+K E+ H I + A ++ES M + + YK
Sbjct: 148 LRDQVLKALYDVLAK---ESEHPPQSI--------LHTAKAIESEMNKVNNCDTNEAAYK 196
Query: 81 FKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKM-QLWYENSRKGRAET 139
+YR + N N + + K+ GD+ PE + AK++A + Q E +++
Sbjct: 197 ARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNA 256
Query: 140 NGRIFSGLVSPKNIVYGICKCSRCGHKRMSFI---------PLRRHITCLNCYQYW 186
G V+ + C +C K++S+ PL TC C W
Sbjct: 257 QGATIERSVTDR------FTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306
>sp|Q9GMV6|TEANC_MACFA Transcription elongation factor A N-terminal and central
domain-containing protein OS=Macaca fascicularis
GN=TCEANC PE=2 SV=1
Length = 350
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 31 LYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNF 90
LY AL+ S DQ KA A +E ++ + ++ + YK R + N
Sbjct: 180 LYAALTSSSA---------DQPKADLWQNFAREIEEHVFTLYSKNIKKYKTCIRSKVANL 230
Query: 91 NDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQ 126
+PKN ++ +L G + P MT EMA+ +++
Sbjct: 231 KNPKNSHLQQNLLSGTMSPREFAEMTVMEMANKELK 266
>sp|A6ZZW1|BYE1_YEAS7 Transcription factor BYE1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=BYE1 PE=3 SV=1
Length = 594
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 59 QVAISMESAMYE-----KWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIV 113
+ A ++E +Y+ ++G + Y K R L N D KN E + V+ G + +V
Sbjct: 277 EFAHNLEEELYKACLNIEFGTLDKIYTEKVRSLYSNLKDKKNLELKAHVVEGKLPLNKLV 336
Query: 114 NMTAKEMASDKMQLWYENSRK 134
NM A E+A+ +Q + E K
Sbjct: 337 NMNASELANPDLQEFKEKRDK 357
>sp|P36106|BYE1_YEAST Transcription factor BYE1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BYE1 PE=1 SV=1
Length = 594
Score = 37.4 bits (85), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 59 QVAISMESAMYE-----KWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIV 113
+ A ++E +Y+ ++G + Y K R L N D KN E + V+ G + +V
Sbjct: 277 EFAHNLEEELYKACLNVEFGTLDKIYTEKVRSLYSNLKDKKNLELKAHVVEGKLPLNKLV 336
Query: 114 NMTAKEMASDKMQLWYENSRK 134
NM A E+A+ +Q + E K
Sbjct: 337 NMNASELANPDLQEFKEKRDK 357
>sp|Q8N8B7|TEANC_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein OS=Homo sapiens GN=TCEANC PE=2
SV=2
Length = 351
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 31 LYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNF 90
LY AL+ S DQ KA A +E ++ + ++ + YK R + N
Sbjct: 181 LYAALTSSST---------DQPKADLWQNFAREIEEHVFTLYSKNIKKYKTCIRSKVANL 231
Query: 91 NDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQ 126
+P+N ++ +L G P MT EMA+ +++
Sbjct: 232 KNPRNSHLQQNLLSGTTSPREFAEMTVMEMANKELK 267
>sp|B7IRB0|ASNA_BACC2 Aspartate--ammonia ligase OS=Bacillus cereus (strain G9842) GN=asnA
PE=3 SV=1
Length = 327
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFITSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|B7JIX2|ASNA_BACC0 Aspartate--ammonia ligase OS=Bacillus cereus (strain AH820) GN=asnA
PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|B9IX36|ASNA_BACCQ Aspartate--ammonia ligase OS=Bacillus cereus (strain Q1) GN=asnA
PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|B7HMI7|ASNA_BACC7 Aspartate--ammonia ligase OS=Bacillus cereus (strain AH187) GN=asnA
PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|P61397|ASNA_BACC1 Aspartate--ammonia ligase OS=Bacillus cereus (strain ATCC 10987)
GN=asnA PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|Q81F55|ASNA_BACCR Aspartate--ammonia ligase OS=Bacillus cereus (strain ATCC 14579 /
DSM 31) GN=asnA PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|B7HIG1|ASNA_BACC4 Aspartate--ammonia ligase OS=Bacillus cereus (strain B4264) GN=asnA
PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|Q6HKD8|ASNA_BACHK Aspartate--ammonia ligase OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=asnA PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|Q63D03|ASNA_BACCZ Aspartate--ammonia ligase OS=Bacillus cereus (strain ZK / E33L)
GN=asnA PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|C1EPH2|ASNA_BACC3 Aspartate--ammonia ligase OS=Bacillus cereus (strain 03BB102)
GN=asnA PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|Q81S64|ASNA_BACAN Aspartate--ammonia ligase OS=Bacillus anthracis GN=asnA PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|A0RCH7|ASNA_BACAH Aspartate--ammonia ligase OS=Bacillus thuringiensis (strain Al
Hakam) GN=asnA PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|C3L6U1|ASNA_BACAC Aspartate--ammonia ligase OS=Bacillus anthracis (strain CDC 684 /
NRRL 3495) GN=asnA PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|C3P6N8|ASNA_BACAA Aspartate--ammonia ligase OS=Bacillus anthracis (strain A0248)
GN=asnA PE=3 SV=1
Length = 327
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 90 FNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVS 149
F D ++H F K LG PE IV +T++E+ +L ++ A+ +G +F
Sbjct: 145 FKDLEDHLFEKYPFLGKYLPEEIVFVTSQELEDKYPELTPKDREHAIAKEHGAVF----- 199
Query: 150 PKNIVYGICKCSRCGHK 166
+ GI R G K
Sbjct: 200 ----IIGIGDALRSGEK 212
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 57 PIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMT 116
P +A+ +E+ MY+ + S+ YK K R F FN KN R +L + +M
Sbjct: 183 PEDIAVEIEAEMYDIYRGVSKEYKEKLRS--FKFNLKKNDILRLSLLNRQISVAKFCSMD 240
Query: 117 AKEMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHKRM 168
MASD ++ + K E + + + G CK +C + ++
Sbjct: 241 IYSMASDDLKEERKKLDKFNTEASMLGQNNEATTDQFQCGKCKQRKCTYTQL 292
>sp|A7GG92|RLMN_CLOBL Probable dual-specificity RNA methyltransferase RlmN OS=Clostridium
botulinum (strain Langeland / NCTC 10281 / Type F)
GN=rlmN PE=3 SV=1
Length = 342
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 70 EKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDK 124
EK R+ + + + Y +L+F+FN+ KN ++ K LL D + + K M+ DK
Sbjct: 21 EKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSDNFYVGVPKVVKKLMSQDK 75
>sp|A5I4T4|RLMN_CLOBH Probable dual-specificity RNA methyltransferase RlmN OS=Clostridium
botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type
A) GN=rlmN PE=3 SV=1
Length = 342
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 70 EKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDK 124
EK R+ + + + Y +L+F+FN+ KN ++ K LL D + + K M+ DK
Sbjct: 21 EKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSDNFYVGVPKVVKKLMSQDK 75
>sp|A7FW72|RLMN_CLOB1 Probable dual-specificity RNA methyltransferase RlmN OS=Clostridium
botulinum (strain ATCC 19397 / Type A) GN=rlmN PE=3 SV=1
Length = 342
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 70 EKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDK 124
EK R+ + + + Y +L+F+FN+ KN ++ K LL D + + K M+ DK
Sbjct: 21 EKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSDNFYVGVPKVVKKLMSQDK 75
>sp|B1KX56|RLMN_CLOBM Probable dual-specificity RNA methyltransferase RlmN OS=Clostridium
botulinum (strain Loch Maree / Type A3) GN=rlmN PE=3
SV=1
Length = 342
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 70 EKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWY 129
EK R+ + + + Y +L+F+FN+ KN ++ K LL D + + K M+ DK
Sbjct: 21 EKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSDNFYIGVPKVVKKLMSQDK----- 75
Query: 130 ENSRKGRAETN-GRIFSGLVSPKNIVYGICKCSRCG 164
N+ K E N G I +V IC ++ G
Sbjct: 76 -NTYKFLFEYNDGNIIESVVMKYKHGNSICVSTQVG 110
>sp|B1IIL7|RLMN_CLOBK Probable dual-specificity RNA methyltransferase RlmN OS=Clostridium
botulinum (strain Okra / Type B1) GN=rlmN PE=3 SV=1
Length = 342
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 70 EKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDK 124
EK R+ + + + Y +L+F+FN+ KN ++ K LL D + + K M+ DK
Sbjct: 21 EKAFRAKQVFDWIYNKLIFDFNNMKNIPYKTKNLLSDNFYIGVPKVVKKLMSQDK 75
>sp|A6Q7Y7|SYP_SULNB Proline--tRNA ligase OS=Sulfurovum sp. (strain NBC37-1) GN=proS
PE=3 SV=1
Length = 568
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 19/87 (21%)
Query: 46 KNVIDQVK----------ACNPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKN 95
K V+D+V+ C + ++ ++++E+ GR KY + L F D KN
Sbjct: 48 KKVLDRVRNVVKEELDKAGCQEVSLSFVTPASLWEESGRYE-----KYGKELLRFKDRKN 102
Query: 96 HEFRKKVLLGDVKPETIVNMTAKEMAS 122
+EF +LG E +VN+ + + S
Sbjct: 103 NEF----VLGPTHEEMMVNLVRQSVKS 125
>sp|A7GNN8|ASNA_BACCN Aspartate--ammonia ligase OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=asnA PE=3 SV=1
Length = 327
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 50 DQVKACNPIQV-AISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVK 108
+++ A + I V E + ++W R+ E + R + F D ++H F K LG
Sbjct: 105 EELDATHSIYVDQWDWEKIVQKEW-RTVEYLQETVRTIYGIFKDLEDHLFEKYPFLGKYL 163
Query: 109 PETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLVSPKNIVYGICKCSRCGHK 166
PE I +T++E+ +L + A+ G +F + GI R G K
Sbjct: 164 PEDIAFITSQELEDKYPELTPKEREHAIAKEYGAVF---------IIGIGDVLRSGEK 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,176,591
Number of Sequences: 539616
Number of extensions: 2605333
Number of successful extensions: 7020
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6973
Number of HSP's gapped (non-prelim): 51
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)