Query 036389
Match_columns 198
No_of_seqs 170 out of 675
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3po3_S Transcription elongatio 100.0 9.5E-48 3.3E-52 314.2 10.6 162 11-189 3-178 (178)
2 1pqv_S STP-alpha, transcriptio 100.0 2.6E-44 8.8E-49 315.9 15.4 162 11-189 134-309 (309)
3 2lw4_A Transcription elongatio 100.0 1.1E-33 3.8E-38 215.6 4.8 108 16-132 5-112 (113)
4 3ndq_A Transcription elongatio 100.0 2.4E-31 8.3E-36 201.2 9.2 105 11-124 4-108 (108)
5 2dme_A PHD finger protein 3; P 100.0 5E-32 1.7E-36 208.5 2.8 112 17-134 6-117 (120)
6 1tfi_A Transcriptional elongat 99.4 7.4E-14 2.5E-18 91.5 3.6 38 152-189 4-50 (50)
7 1qyp_A RNA polymerase II; tran 98.9 3E-10 1E-14 75.8 2.8 34 155-188 13-55 (57)
8 3h0g_I DNA-directed RNA polyme 98.8 1.8E-09 6E-14 81.7 3.3 33 155-187 70-111 (113)
9 1twf_I B12.6, DNA-directed RNA 98.8 3.6E-09 1.2E-13 81.0 3.5 37 156-192 71-116 (122)
10 3qt1_I DNA-directed RNA polyme 98.6 4.9E-09 1.7E-13 81.5 0.0 33 155-187 90-131 (133)
11 1k81_A EIF-2-beta, probable tr 94.8 0.014 5E-07 34.9 2.0 30 159-188 2-33 (36)
12 1pft_A TFIIB, PFTFIIBN; N-term 93.3 0.065 2.2E-06 33.8 3.0 32 155-186 3-34 (50)
13 1vq8_Z 50S ribosomal protein L 89.9 0.18 6E-06 35.7 2.5 30 155-185 25-54 (83)
14 1qxf_A GR2, 30S ribosomal prot 89.5 0.16 5.6E-06 34.4 2.0 30 157-186 7-36 (66)
15 1wii_A Hypothetical UPF0222 pr 89.0 0.35 1.2E-05 34.3 3.5 35 154-188 20-59 (85)
16 2e2z_A TIM15; protein import, 88.3 0.22 7.6E-06 36.4 2.1 31 155-185 11-47 (100)
17 2akl_A PHNA-like protein PA012 87.6 0.28 9.7E-06 37.6 2.4 31 155-187 25-55 (138)
18 3j20_W 30S ribosomal protein S 87.2 0.29 9.8E-06 32.9 1.9 29 157-185 15-43 (63)
19 2xzm_6 RPS27E; ribosome, trans 87.0 0.27 9.2E-06 34.6 1.8 28 158-185 33-60 (81)
20 3iz6_X 40S ribosomal protein S 85.2 0.27 9.3E-06 35.0 1.1 30 157-186 36-65 (86)
21 2d74_B Translation initiation 85.0 0.24 8.2E-06 38.7 0.8 31 158-188 105-137 (148)
22 2fiy_A Protein FDHE homolog; F 84.6 0.6 2.1E-05 40.4 3.2 39 156-194 181-226 (309)
23 3u5c_b RP61, YS20, 40S ribosom 83.5 0.44 1.5E-05 33.6 1.6 30 156-185 33-62 (82)
24 1nee_A EIF-2-beta, probable tr 83.3 0.51 1.8E-05 36.3 2.0 28 158-185 103-132 (138)
25 1dl6_A Transcription factor II 80.0 0.87 3E-05 29.7 1.9 27 158-184 12-38 (58)
26 2js4_A UPF0434 protein BB2007; 78.3 1.5 5E-05 29.8 2.7 36 155-191 6-41 (70)
27 3cw2_K Translation initiation 77.9 0.34 1.2E-05 37.4 -0.7 31 155-185 101-133 (139)
28 2e9h_A EIF-5, eukaryotic trans 77.8 1.3 4.3E-05 34.9 2.6 30 158-187 104-137 (157)
29 2hf1_A Tetraacyldisaccharide-1 76.4 1.8 6.2E-05 29.2 2.7 40 155-196 6-45 (68)
30 2jr6_A UPF0434 protein NMA0874 76.3 1.9 6.7E-05 29.1 2.9 40 155-196 6-45 (68)
31 2g2k_A EIF-5, eukaryotic trans 74.6 2.1 7.3E-05 34.0 3.2 31 158-188 97-131 (170)
32 3eqt_A ATP-dependent RNA helic 74.5 1.3 4.6E-05 34.3 1.9 15 174-188 67-81 (145)
33 2pk7_A Uncharacterized protein 72.1 2.7 9.1E-05 28.5 2.7 40 155-196 6-45 (69)
34 4esj_A Type-2 restriction enzy 71.9 2.2 7.6E-05 35.8 2.7 28 158-186 35-66 (257)
35 2gut_A ARC/mediator, positive 71.5 9.1 0.00031 26.5 5.4 55 21-91 12-66 (77)
36 2jny_A Uncharacterized BCR; st 70.8 3.3 0.00011 27.9 2.9 40 155-196 8-47 (67)
37 3h0g_L DNA-directed RNA polyme 70.5 1.5 5.1E-05 29.4 1.1 29 155-185 19-47 (63)
38 3ga8_A HTH-type transcriptiona 70.0 2.9 9.9E-05 28.4 2.6 31 158-188 3-48 (78)
39 2kwq_A Protein MCM10 homolog; 69.2 1.6 5.4E-05 31.4 1.1 28 154-185 45-74 (92)
40 2k0n_A Mediator of RNA polymer 66.9 26 0.00088 24.4 6.8 66 20-91 8-73 (85)
41 2qfd_A Probable ATP-dependent 65.0 2.5 8.5E-05 32.8 1.5 35 154-188 24-95 (145)
42 4gl2_A Interferon-induced heli 64.3 5.3 0.00018 36.7 3.9 13 175-188 640-652 (699)
43 3j20_Y 30S ribosomal protein S 64.1 5.1 0.00018 25.3 2.7 30 155-185 17-46 (50)
44 1twf_L ABC10-alpha, DNA-direct 62.9 1.6 5.5E-05 29.7 0.1 30 154-185 25-54 (70)
45 1kdx_A CBP; complex (transcrip 61.5 28 0.00097 24.1 6.4 66 19-91 10-76 (81)
46 4ayb_P DNA-directed RNA polyme 60.6 3.1 0.00011 26.3 1.1 20 176-197 3-22 (48)
47 3ga3_A Interferon-induced heli 59.9 3.8 0.00013 31.3 1.7 14 174-188 65-78 (133)
48 2k4x_A 30S ribosomal protein S 57.7 5.2 0.00018 25.7 1.9 32 154-186 15-46 (55)
49 3lrr_A Probable ATP-dependent 56.5 4.4 0.00015 30.4 1.5 16 173-188 56-73 (121)
50 1x0t_A Ribonuclease P protein 54.7 5.7 0.00019 29.5 1.9 33 157-189 65-107 (120)
51 1gnf_A Transcription factor GA 53.6 1.5 5.3E-05 27.4 -1.2 31 157-188 4-37 (46)
52 4a2v_A RIG-I, retinoic acid in 53.5 5.5 0.00019 30.3 1.7 16 173-188 58-75 (131)
53 3j21_i 50S ribosomal protein L 52.7 8.5 0.00029 27.0 2.4 31 155-186 33-63 (83)
54 2vut_I AREA, nitrogen regulato 51.6 2 7E-05 26.4 -0.8 29 159-188 3-34 (43)
55 2k3r_A Ribonuclease P protein 50.0 6.6 0.00023 29.3 1.6 33 157-189 60-102 (123)
56 2i5o_A DNA polymerase ETA; zin 49.2 6.9 0.00024 23.5 1.3 13 154-166 6-18 (39)
57 3j21_g 50S ribosomal protein L 48.3 5.5 0.00019 25.4 0.8 25 156-185 13-37 (51)
58 4bbr_M Transcription initiatio 48.3 9.6 0.00033 33.0 2.6 26 158-183 22-49 (345)
59 3axs_A Probable N(2),N(2)-dime 48.0 5.3 0.00018 35.3 0.9 35 156-191 243-278 (392)
60 2hgo_A CASSIICOLIN; toxin, dis 47.9 5.2 0.00018 21.8 0.5 10 180-189 16-25 (27)
61 3iz5_m 60S ribosomal protein L 47.0 10 0.00035 27.1 2.2 31 155-186 34-64 (92)
62 3cc2_Z 50S ribosomal protein L 45.7 13 0.00043 27.7 2.5 31 155-186 58-88 (116)
63 3dwd_A ADP-ribosylation factor 45.4 17 0.00057 28.1 3.3 26 158-184 39-66 (147)
64 2e72_A POGO transposable eleme 45.3 1.7 5.8E-05 27.6 -2.0 36 154-190 9-44 (49)
65 3k1f_M Transcription initiatio 44.9 13 0.00044 30.0 2.6 28 157-184 21-50 (197)
66 4gat_A Nitrogen regulatory pro 44.3 4.2 0.00014 27.3 -0.2 33 155-188 7-42 (66)
67 2gmg_A Hypothetical protein PF 44.2 6.3 0.00021 28.9 0.7 30 155-187 65-95 (105)
68 2fiy_A Protein FDHE homolog; F 42.2 13 0.00043 32.0 2.4 33 157-189 222-266 (309)
69 4a17_Y RPL37A, 60S ribosomal p 40.9 15 0.0005 26.8 2.2 31 155-186 34-64 (103)
70 1gh9_A 8.3 kDa protein (gene M 40.8 21 0.00073 24.1 2.9 30 157-190 4-34 (71)
71 3k7a_M Transcription initiatio 39.6 7.7 0.00026 33.5 0.6 28 157-184 21-50 (345)
72 2ct7_A Ring finger protein 31; 39.1 15 0.00051 25.2 2.0 12 175-186 50-61 (86)
73 3nw0_A Non-structural maintena 38.6 16 0.00056 30.0 2.4 35 157-194 193-235 (238)
74 1i7f_A Heat shock protein 33; 38.5 6.6 0.00023 33.5 0.0 41 155-196 225-280 (292)
75 1dxg_A Desulforedoxin; non-hem 38.3 12 0.00041 21.7 1.1 12 174-185 4-15 (36)
76 2owa_A Arfgap-like finger doma 38.0 26 0.00088 26.6 3.3 26 158-184 37-64 (138)
77 1bbo_A Human enhancer-binding 37.2 11 0.00038 22.2 0.9 30 158-187 2-40 (57)
78 1d0q_A DNA primase; zinc-bindi 36.7 24 0.00081 25.0 2.8 30 156-185 36-67 (103)
79 3izc_m 60S ribosomal protein R 35.9 17 0.00058 25.9 1.8 31 155-186 34-64 (92)
80 1ffk_W Ribosomal protein L37AE 35.9 21 0.00071 24.3 2.2 30 155-185 25-54 (73)
81 2lcq_A Putative toxin VAPC6; P 35.6 12 0.00041 28.5 1.1 29 154-185 129-157 (165)
82 2lce_A B-cell lymphoma 6 prote 35.2 12 0.00042 23.5 1.0 35 154-188 14-57 (74)
83 4a2w_A RIG-I, retinoic acid in 35.2 17 0.00057 35.4 2.3 15 174-188 864-880 (936)
84 2kdx_A HYPA, hydrogenase/ureas 34.2 12 0.00042 27.2 0.9 29 154-185 70-99 (119)
85 3dfx_A Trans-acting T-cell-spe 34.1 3.9 0.00013 27.2 -1.7 30 158-188 8-40 (63)
86 2adr_A ADR1; transcription reg 33.9 12 0.00042 22.3 0.8 30 158-187 3-41 (60)
87 3a43_A HYPD, hydrogenase nicke 33.1 16 0.00054 27.6 1.4 12 154-165 67-78 (139)
88 3jyw_9 60S ribosomal protein L 32.5 15 0.0005 25.1 1.0 31 155-186 24-54 (72)
89 3uk3_C Zinc finger protein 217 31.9 14 0.00047 21.8 0.7 31 157-187 4-43 (57)
90 2ctt_A DNAJ homolog subfamily 31.4 38 0.0013 23.7 3.2 29 157-185 45-76 (104)
91 2kpi_A Uncharacterized protein 31.1 38 0.0013 21.6 2.8 34 155-191 8-43 (56)
92 4gzn_C ZFP-57, zinc finger pro 30.0 14 0.00047 23.5 0.5 32 157-188 4-44 (60)
93 1x6e_A Zinc finger protein 24; 29.9 16 0.00053 22.9 0.8 33 155-187 12-53 (72)
94 6rxn_A Rubredoxin; electron tr 29.5 17 0.0006 22.5 0.9 16 156-171 29-44 (46)
95 1ltl_A DNA replication initiat 28.5 27 0.00092 29.0 2.2 34 154-189 131-170 (279)
96 1vd4_A Transcription initiatio 28.4 19 0.00064 22.2 0.9 34 155-188 12-51 (62)
97 2dkt_A Ring finger and CHY zin 27.6 37 0.0013 26.0 2.6 25 159-183 73-105 (143)
98 1x5w_A Zinc finger protein 64, 26.6 18 0.00061 22.5 0.6 33 155-187 7-48 (70)
99 2au3_A DNA primase; zinc ribbo 26.4 36 0.0012 29.8 2.7 28 157-184 34-63 (407)
100 2kvf_A Zinc finger and BTB dom 26.2 23 0.0008 17.1 0.9 11 177-187 4-14 (28)
101 2vpb_A Hpygo1, pygopus homolog 26.1 33 0.0011 22.4 1.9 29 155-187 6-35 (65)
102 3hcj_A MSRB, peptide methionin 25.7 1.7E+02 0.0058 22.6 6.1 13 154-166 47-59 (154)
103 2kvh_A Zinc finger and BTB dom 25.4 25 0.00086 17.0 0.9 11 177-187 4-14 (27)
104 3v2d_5 50S ribosomal protein L 25.4 19 0.00065 23.5 0.5 24 154-183 27-50 (60)
105 2k5c_A Uncharacterized protein 24.5 26 0.0009 24.6 1.1 13 154-166 48-60 (95)
106 2jsp_A Transcriptional regulat 24.2 23 0.00079 25.0 0.8 13 175-187 20-32 (87)
107 2k5r_A Uncharacterized protein 23.8 43 0.0015 23.9 2.2 17 174-190 51-67 (97)
108 2kvg_A Zinc finger and BTB dom 23.2 27 0.00091 17.0 0.8 11 177-187 4-14 (27)
109 2olm_A Nucleoporin-like protei 23.0 45 0.0015 25.3 2.3 26 158-184 26-53 (140)
110 2qkd_A Zinc finger protein ZPR 22.9 47 0.0016 29.6 2.8 31 156-186 219-259 (404)
111 2kmk_A Zinc finger protein GFI 22.5 23 0.00078 22.2 0.5 32 156-187 28-68 (82)
112 2cot_A Zinc finger protein 435 22.4 25 0.00086 22.2 0.7 33 155-187 16-57 (77)
113 4rxn_A Rubredoxin; electron tr 22.4 31 0.001 22.1 1.1 17 156-172 35-51 (54)
114 2kv1_A Methionine-R-sulfoxide 22.2 43 0.0015 25.1 2.0 14 172-185 64-77 (124)
115 2p57_A GTPase-activating prote 21.9 31 0.0011 26.4 1.2 26 158-184 38-65 (144)
116 2crw_A ARF GAP 3, ADP-ribosyla 21.5 28 0.00096 26.8 0.9 25 158-183 30-56 (149)
117 2yt9_A Zinc finger-containing 21.5 35 0.0012 22.1 1.3 12 175-186 64-75 (95)
118 3o47_A ADP-ribosylation factor 21.0 44 0.0015 28.0 2.1 24 159-183 39-64 (329)
119 3e9v_A Protein BTG2; B-cell tr 20.8 29 0.001 25.7 0.8 54 57-112 28-85 (120)
120 1yk4_A Rubredoxin, RD; electro 20.5 32 0.0011 21.6 0.9 16 156-171 34-49 (52)
121 2v3b_B Rubredoxin 2, rubredoxi 20.4 32 0.0011 21.9 0.9 17 156-172 35-51 (55)
122 1x3z_A Peptide: N-glycanase; h 20.3 63 0.0021 28.1 3.0 36 155-190 117-169 (335)
No 1
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=100.00 E-value=9.5e-48 Score=314.22 Aligned_cols=162 Identities=26% Similarity=0.429 Sum_probs=138.3
Q ss_pred CCCCcc--ccCCcHHHHHHHHHHHHHHhhhhhhccccchhhhhhcccChHHHHHHHHHHHHHHhCC-CcH-HHHHHHHHH
Q 036389 11 PKASKV--VKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGR-SSE-TYKFKYRRL 86 (198)
Q Consensus 11 ~~~~~~--~~~~d~iR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~~~~A~~IE~alf~~~~~-~~~-~Yk~k~Rsl 86 (198)
++..++ +.++|++|++++++|++||.....+.+ .++..+|.+||++||+.|++ ++. +|++++|||
T Consensus 3 ~~~d~v~~~~~~d~vRdk~~~lL~~aL~~~~~~~~-----------~~~~~~A~~IE~~if~~~~~~~~~k~Yk~k~Rsl 71 (178)
T 3po3_S 3 SKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPP-----------QSILHTAKAIESEMNKVNNCDTNEAAYKARYRII 71 (178)
T ss_dssp ------------CHHHHHHHHHHHHHTTSSSSCST-----------THHHHHHHHHHHHHHHHTSCSSSSTHHHHHHHHH
T ss_pred ccCCCcCcCcCCChHHHHHHHHHHHHHhcCCCCch-----------hhHHHHHHHHHHHHHHHhcCCCchhhhhhhhhHH
Confidence 344445 679999999999999999998653322 23578999999999999986 555 899999999
Q ss_pred HHhcCCCCCHHHHHHhhcCCCCchhcccCCHHhhccHHHHHHHHHHhccccccccccccccc-CCCcccccceEcCCCCC
Q 036389 87 LFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLV-SPKNIVYGICKCSRCGH 165 (198)
Q Consensus 87 ~~NLkd~kNp~Lr~~vl~G~isp~~lv~Ms~eELas~e~k~~~e~~~~~e~~~~~~l~~~~~-~~~~~~t~~~~C~~C~~ 165 (198)
+|||||++||+|+.+|++|+|+|+.||.|+++||||+|++++++++++ ++ |++++. ....+.|+.++||+||+
T Consensus 72 ~~NLKd~~N~~Lr~~vl~g~isp~~lv~Ms~eElas~elk~~~e~~~~-e~-----l~~~~~~~~~~~~t~~~~Cp~C~~ 145 (178)
T 3po3_S 72 YSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAK-QN-----LYNAQGATIERSVTDRFTCGKCKE 145 (178)
T ss_dssp HHHHHSSSCSHHHHHHHHCCCTTHHHHCCTTTTSSCSHHHHHHHHHHH-HH-----HHHTBCCCCCCCCBSSSCCSSSCC
T ss_pred HHHcCCCCCHHHHHHHhcCCCCHHHHHhcCchhhCCHHHHHHHHHHHH-HH-----HHHhhhccccCCCcCCcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999 88 999988 33344788999999999
Q ss_pred CCceEe---------ccceEEEeccCCCccccc
Q 036389 166 KRMSFI---------PLRRHITCLNCYQYWAST 189 (198)
Q Consensus 166 ~~~~~~---------pmt~fv~C~~Cg~~W~~~ 189 (198)
++|+|+ |||+||+|.+|||+|+||
T Consensus 146 ~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~f~ 178 (178)
T 3po3_S 146 KKVSYYQLQTRSAAAPLTTFCTCEACGNRWKFS 178 (178)
T ss_dssp SCEECCCCCCSCTTSCCCCCEEETTTCCEECCC
T ss_pred CceEEEEeecccCCCCCcEEEEcCCCCCeeccC
Confidence 999999 999999999999999997
No 2
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=100.00 E-value=2.6e-44 Score=315.86 Aligned_cols=162 Identities=25% Similarity=0.415 Sum_probs=143.7
Q ss_pred CCCCccc--cCCcHHHHHHHHHHHHHHhhhhhhccccchhhhhhcccChHHHHHHHHHHHHHHhCCCcHH--HHHHHHHH
Q 036389 11 PKASKVV--KCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSET--YKFKYRRL 86 (198)
Q Consensus 11 ~~~~~~~--~~~d~iR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~~~~A~~IE~alf~~~~~~~~~--Yk~k~Rsl 86 (198)
|+.++++ .++|++|++||++|+++|.....+.+ .++..+|.+||.+||+.|++++.+ |++++|+|
T Consensus 134 ~~~~~~~~~~~~d~~R~k~r~~L~~aL~~~~~~~~-----------~~~~~~A~~IE~al~~~~~~~~~~~~Yk~k~Rsl 202 (309)
T 1pqv_S 134 SKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPP-----------QSILHTAKAIESEMNKVNNCDTNEAAYKARYRII 202 (309)
T ss_pred CCCCCCCcCcCChHHHHHHHHHHHHHHhcCCCccc-----------hhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4444454 67899999999999999986432211 146799999999999999877666 99999999
Q ss_pred HHhcCCCCCHHHHHHhhcCCCCchhcccCCHHhhccHHHHHHHHHHhccccccccccccccc-CCCcccccceEcCCCCC
Q 036389 87 LFNFNDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRKGRAETNGRIFSGLV-SPKNIVYGICKCSRCGH 165 (198)
Q Consensus 87 ~~NLkd~kNp~Lr~~vl~G~isp~~lv~Ms~eELas~e~k~~~e~~~~~e~~~~~~l~~~~~-~~~~~~t~~~~C~~C~~ 165 (198)
+|||||++||.|+.+||.|+|+|++||.|+++||||+|++++++++.+ ++ |+++++ ....+.++.|+|++||+
T Consensus 203 ~~NLKd~~N~~Lr~~vl~g~i~p~~lv~Ms~eElasde~k~~~~~~~~-e~-----l~~~~~~~~~~~~~~~~~C~~C~~ 276 (309)
T 1pqv_S 203 YSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAK-QN-----LYNAQGATIERSVTDRFTCGKCKE 276 (309)
T ss_pred HHHcCcCCChHHHHHHHcCCCCHHHHhcCCHHHhCCHHHHHHHHHHHH-HH-----HHHhhhccccccCcccccCCCCCC
Confidence 999999999999999999999999999999999999999999999999 98 999988 33444788999999999
Q ss_pred CCceEe---------ccceEEEeccCCCccccc
Q 036389 166 KRMSFI---------PLRRHITCLNCYQYWAST 189 (198)
Q Consensus 166 ~~~~~~---------pmt~fv~C~~Cg~~W~~~ 189 (198)
++|+|+ |||+||+|.+|||+|+||
T Consensus 277 ~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~fc 309 (309)
T 1pqv_S 277 KKVSYYQLQTRSADEPLTTFCTCEACGNRWKFS 309 (309)
T ss_pred CeeEEEEeecccCCCCCcEEEEeCCCCCceecC
Confidence 999999 999999999999999998
No 3
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.98 E-value=1.1e-33 Score=215.62 Aligned_cols=108 Identities=28% Similarity=0.405 Sum_probs=96.2
Q ss_pred cccCCcHHHHHHHHHHHHHHhhhhhhccccchhhhhhcccChHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCC
Q 036389 16 VVKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKN 95 (198)
Q Consensus 16 ~~~~~d~iR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~~~~A~~IE~alf~~~~~~~~~Yk~k~Rsl~~NLkd~kN 95 (198)
.|.++|.+|++|+++|++||.....+.. ...++..+|.+||.++|..|+.++.+|++|+|||+|||||++|
T Consensus 5 ~p~t~D~vRdk~~e~L~~aL~~~~~~~~---------~~~~~~~~A~~IE~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~N 75 (113)
T 2lw4_A 5 VPVTCDAVRNKCREMLTAALQTDHDHVA---------IGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKN 75 (113)
T ss_dssp SCCCCSTTHHHHHHHHHHHHHSSTHHHH---------HTCCHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHCSSS
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCccc---------ccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCC
Confidence 4679999999999999999986432221 1245789999999999999999889999999999999999999
Q ss_pred HHHHHHhhcCCCCchhcccCCHHhhccHHHHHHHHHH
Q 036389 96 HEFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENS 132 (198)
Q Consensus 96 p~Lr~~vl~G~isp~~lv~Ms~eELas~e~k~~~e~~ 132 (198)
|+||.+|++|+|+|++||.||++||||+|+|++|+++
T Consensus 76 p~Lr~~vl~G~i~p~~l~~Ms~eEmAs~elk~~r~~~ 112 (113)
T 2lw4_A 76 PDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAM 112 (113)
T ss_dssp SHHHHHHHTTSSCHHHHHHSCHHHHHCTTTTTCSSSC
T ss_pred HHHHHHHHcCCCCHHHHhcCCHHHcCCHHHHHHHHHc
Confidence 9999999999999999999999999999999887654
No 4
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=99.97 E-value=2.4e-31 Score=201.21 Aligned_cols=105 Identities=30% Similarity=0.433 Sum_probs=87.0
Q ss_pred CCCCccccCCcHHHHHHHHHHHHHHhhhhhhccccchhhhhhcccChHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Q 036389 11 PKASKVVKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNF 90 (198)
Q Consensus 11 ~~~~~~~~~~d~iR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~~~~A~~IE~alf~~~~~~~~~Yk~k~Rsl~~NL 90 (198)
|+....+.++|++|++|+++|++||.......+. ..++..+|.+||++||+.|+.++.+|++|+|||+|||
T Consensus 4 ~~~~~~~~t~d~vR~k~~~lL~~aL~~~~d~~~~---------~~~~~~lA~~IE~~if~~~~~~~~~Yk~k~Rsl~fNL 74 (108)
T 3ndq_A 4 PFTPRAPSTSDSVRLKCREMLAAALRTGDDYIAI---------GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNL 74 (108)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHTTGGGHHHHH---------TCCHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHcCCCCCcc---------cccHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHc
Confidence 3444556799999999999999999975422111 2457899999999999999988889999999999999
Q ss_pred CCCCCHHHHHHhhcCCCCchhcccCCHHhhccHH
Q 036389 91 NDPKNHEFRKKVLLGDVKPETIVNMTAKEMASDK 124 (198)
Q Consensus 91 kd~kNp~Lr~~vl~G~isp~~lv~Ms~eELas~e 124 (198)
||++||+||.+|++|+|+|++||.|+++||||+|
T Consensus 75 Kd~kNp~Lr~~vl~G~isp~~lv~Ms~eEmAS~E 108 (108)
T 3ndq_A 75 KDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDE 108 (108)
T ss_dssp TCTTCHHHHHHHHHTSSCHHHHHHCCTTTC----
T ss_pred CCCCCHHHHHHHHcCCcCHHHHhCCCHHHccCCC
Confidence 9999999999999999999999999999999986
No 5
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=5e-32 Score=208.47 Aligned_cols=112 Identities=33% Similarity=0.540 Sum_probs=98.4
Q ss_pred ccCCcHHHHHHHHHHHHHHhhhhhhccccchhhhhhcccChHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCCH
Q 036389 17 VKCNDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFNDPKNH 96 (198)
Q Consensus 17 ~~~~d~iR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~~~~A~~IE~alf~~~~~~~~~Yk~k~Rsl~~NLkd~kNp 96 (198)
..++|.+|++||++|+++|...+.+.... . .++++..+|.+||.+||+.|+.++.+|++++|||+|||||++||
T Consensus 6 ~~~~d~~Rd~~r~~L~eaL~~~~~~~~~~--~----~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp 79 (120)
T 2dme_A 6 SGSADQIRQSVRHSLKDILMKRLTDSNLK--V----PEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNN 79 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTTTCC--C----CHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCC
T ss_pred CCCCchHHHHHHHHHHHHHHHhccccccc--c----chhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCH
Confidence 34569999999999999999877644321 1 12346799999999999999988889999999999999999999
Q ss_pred HHHHHhhcCCCCchhcccCCHHhhccHHHHHHHHHHhc
Q 036389 97 EFRKKVLLGDVKPETIVNMTAKEMASDKMQLWYENSRK 134 (198)
Q Consensus 97 ~Lr~~vl~G~isp~~lv~Ms~eELas~e~k~~~e~~~~ 134 (198)
+||.+||+|+|+|++||.|+++||||+|+|+|++++.+
T Consensus 80 ~Lr~~vl~G~i~p~~lv~Ms~eEmAS~elk~~r~~~~~ 117 (120)
T 2dme_A 80 ILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRSGP 117 (120)
T ss_dssp SHHHHHHHTSSCTTHHHHSCTTTTTTCCSTTTCTTCCC
T ss_pred HHHHHHHcCCCCHHHHhcCCHHHcCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999998887765
No 6
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.42 E-value=7.4e-14 Score=91.52 Aligned_cols=38 Identities=18% Similarity=0.633 Sum_probs=35.4
Q ss_pred cccccceEcCCCCCCCceEe---------ccceEEEeccCCCccccc
Q 036389 152 NIVYGICKCSRCGHKRMSFI---------PLRRHITCLNCYQYWAST 189 (198)
Q Consensus 152 ~~~t~~~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~~~ 189 (198)
++.|+.++||+||++++.|+ |||+||.|.+|||+|+||
T Consensus 4 ~~~t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~~~ 50 (50)
T 1tfi_A 4 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 50 (50)
T ss_dssp CEECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEECC
T ss_pred CceeCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEEeC
Confidence 34788899999999999999 999999999999999996
No 7
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=98.94 E-value=3e-10 Score=75.83 Aligned_cols=34 Identities=24% Similarity=0.619 Sum_probs=31.2
Q ss_pred ccceEcCCCCCCCceEe---------ccceEEEeccCCCcccc
Q 036389 155 YGICKCSRCGHKRMSFI---------PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~~ 188 (198)
+..++||+||+.++.|+ |||+||.|.+|||+|+.
T Consensus 13 ~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 13 TTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp EEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred ceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 34689999999999998 99999999999999975
No 8
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.82 E-value=1.8e-09 Score=81.67 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=30.5
Q ss_pred ccceEcCCCCCCCceEe---------ccceEEEeccCCCccc
Q 036389 155 YGICKCSRCGHKRMSFI---------PLRRHITCLNCYQYWA 187 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~ 187 (198)
+..++||+||++++.|+ |||+||.|.+|||+|+
T Consensus 70 ~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 70 RSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp BCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred CcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence 33489999999999999 9999999999999997
No 9
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=98.76 E-value=3.6e-09 Score=80.99 Aligned_cols=37 Identities=19% Similarity=0.557 Sum_probs=33.3
Q ss_pred cceEcCCCCCCCceEe---------ccceEEEeccCCCcccccccc
Q 036389 156 GICKCSRCGHKRMSFI---------PLRRHITCLNCYQYWASTNPE 192 (198)
Q Consensus 156 ~~~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~~~~~~ 192 (198)
..++||+||++++.|+ |||+||+|.+|||+|+.-+..
T Consensus 71 t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn~~ 116 (122)
T 1twf_I 71 SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKN 116 (122)
T ss_dssp CCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTTC
T ss_pred cCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCChh
Confidence 3589999999999999 999999999999999986544
No 10
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=98.60 E-value=4.9e-09 Score=81.47 Aligned_cols=33 Identities=24% Similarity=0.740 Sum_probs=0.0
Q ss_pred ccceEcCCCCCCCceEe---------ccceEEEeccCCCccc
Q 036389 155 YGICKCSRCGHKRMSFI---------PLRRHITCLNCYQYWA 187 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~ 187 (198)
++.++|++||++++.|+ |||+||.|.+|||+|+
T Consensus 90 ~t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~ 131 (133)
T 3qt1_I 90 RSDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWK 131 (133)
T ss_dssp ------------------------------------------
T ss_pred cccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeC
Confidence 34589999999999998 9999999999999997
No 11
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=94.79 E-value=0.014 Score=34.95 Aligned_cols=30 Identities=20% Similarity=0.503 Sum_probs=26.8
Q ss_pred EcCCCCCCCceEe--ccceEEEeccCCCcccc
Q 036389 159 KCSRCGHKRMSFI--PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 159 ~C~~C~~~~~~~~--pmt~fv~C~~Cg~~W~~ 188 (198)
.|+.|+.+++.+. .-..|..|..||+++-.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIRPI 33 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcccc
Confidence 6999999999998 67799999999998854
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=93.26 E-value=0.065 Score=33.81 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=26.7
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCcc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYW 186 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W 186 (198)
...+.||.||+..-.|-+-+.-+.|..||.-+
T Consensus 3 ~~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 3 NKQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SSCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred CccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 34578999999777777888889999999865
No 13
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=89.95 E-value=0.18 Score=35.68 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=25.6
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQY 185 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~ 185 (198)
...++||.||. ...|.|.+....|..||+.
T Consensus 25 ~~~y~Cp~CG~-~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 25 NEDHACPNCGE-DRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HSCEECSSSCC-EEEEEEETTEEEETTTCCE
T ss_pred cccCcCCCCCC-cceeccCCCeEECCCCCCE
Confidence 44689999997 4667799999999999997
No 14
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=89.50 E-value=0.16 Score=34.39 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=26.3
Q ss_pred ceEcCCCCCCCceEeccceEEEeccCCCcc
Q 036389 157 ICKCSRCGHKRMSFIPLRRHITCLNCYQYW 186 (198)
Q Consensus 157 ~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W 186 (198)
..+|+.|+...+-|.-..+-|.|..||..-
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEE
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEE
Confidence 369999999999999888889999999753
No 15
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=89.01 E-value=0.35 Score=34.29 Aligned_cols=35 Identities=17% Similarity=0.430 Sum_probs=28.5
Q ss_pred cccceEcCCCCCCCceEe-----ccceEEEeccCCCcccc
Q 036389 154 VYGICKCSRCGHKRMSFI-----PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 154 ~t~~~~C~~C~~~~~~~~-----pmt~fv~C~~Cg~~W~~ 188 (198)
-...|.||-|++.++--. -++-.+.|.+||.++.+
T Consensus 20 L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred CCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 356799999999974333 67899999999998765
No 16
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=88.32 E-value=0.22 Score=36.42 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=26.4
Q ss_pred ccceEcCCCCCCCceEe------ccceEEEeccCCCc
Q 036389 155 YGICKCSRCGHKRMSFI------PLRRHITCLNCYQY 185 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~------pmt~fv~C~~Cg~~ 185 (198)
.-.|+|..|+.+...-+ --+++|+|..|.++
T Consensus 11 ~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 11 MIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCE
T ss_pred EEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccc
Confidence 34699999999887655 77999999999997
No 17
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=87.62 E-value=0.28 Score=37.58 Aligned_cols=31 Identities=16% Similarity=0.460 Sum_probs=23.5
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCccc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYWA 187 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W~ 187 (198)
+++-.||+|++..++- .-..+.|..|+|.|.
T Consensus 25 ~~lP~CP~C~seytYe--Dg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 25 STLPPCPQCNSEYTYE--DGALLVCPECAHEWS 55 (138)
T ss_dssp CCSCCCTTTCCCCCEE--CSSSEEETTTTEEEC
T ss_pred ccCCCCCCCCCcceEe--cCCeEECCccccccC
Confidence 4567999999885543 334467999999995
No 18
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.15 E-value=0.29 Score=32.92 Aligned_cols=29 Identities=28% Similarity=0.647 Sum_probs=25.8
Q ss_pred ceEcCCCCCCCceEeccceEEEeccCCCc
Q 036389 157 ICKCSRCGHKRMSFIPLRRHITCLNCYQY 185 (198)
Q Consensus 157 ~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~ 185 (198)
..+|+.|+...+-|.-..+-|.|..||..
T Consensus 15 ~VkCp~C~~~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp EEECSSSCCEEEEESSCSSCEECSSSCCE
T ss_pred EEECCCCCCeeEEEecCCeEEEccCcCCE
Confidence 46999999999998888888999999975
No 19
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=86.99 E-value=0.27 Score=34.63 Aligned_cols=28 Identities=29% Similarity=0.674 Sum_probs=25.5
Q ss_pred eEcCCCCCCCceEeccceEEEeccCCCc
Q 036389 158 CKCSRCGHKRMSFIPLRRHITCLNCYQY 185 (198)
Q Consensus 158 ~~C~~C~~~~~~~~pmt~fv~C~~Cg~~ 185 (198)
.+|+.|+...+-|.-..+.|.|..||..
T Consensus 33 VkCp~C~n~q~VFShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 33 VKCAQCQNIQMIFSNAQSTIICEKCSAI 60 (81)
T ss_dssp EECSSSCCEEEEETTCSSCEECSSSCCE
T ss_pred eECCCCCCeeEEEecCccEEEccCCCCE
Confidence 4999999999999888899999999975
No 20
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=85.21 E-value=0.27 Score=34.95 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=26.5
Q ss_pred ceEcCCCCCCCceEeccceEEEeccCCCcc
Q 036389 157 ICKCSRCGHKRMSFIPLRRHITCLNCYQYW 186 (198)
Q Consensus 157 ~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W 186 (198)
..+|+.|+...+-|.-..+.|.|..||..-
T Consensus 36 ~VkCp~C~~~~~VFShA~t~V~C~~CgtvL 65 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQTVVVCPGCQTVL 65 (86)
T ss_dssp EEECTTTCCEEEEETTCSSCCCCSSSCCCC
T ss_pred EEECCCCCCeeEEEecCCcEEEccCCCCEe
Confidence 379999999999999888999999999753
No 21
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=85.03 E-value=0.24 Score=38.67 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=27.1
Q ss_pred eEcCCCCCCCceEe--ccceEEEeccCCCcccc
Q 036389 158 CKCSRCGHKRMSFI--PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 158 ~~C~~C~~~~~~~~--pmt~fv~C~~Cg~~W~~ 188 (198)
..|+.|+.+.+.+. .-..|..|..||.++-.
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V 137 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGAETPI 137 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCC
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCCCccc
Confidence 68999999999998 66799999999988643
No 22
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=84.56 E-value=0.6 Score=40.42 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=29.7
Q ss_pred cceEcCCCCCCCceEe-------ccceEEEeccCCCcccccccccc
Q 036389 156 GICKCSRCGHKRMSFI-------PLRRHITCLNCYQYWASTNPEIR 194 (198)
Q Consensus 156 ~~~~C~~C~~~~~~~~-------pmt~fv~C~~Cg~~W~~~~~~~~ 194 (198)
..-.||-||+.-..-. .-..|..|.-||+.|.|-|-.|.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~ 226 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCS 226 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCS
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCc
Confidence 3458999999976533 22369999999999999876553
No 23
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=83.50 E-value=0.44 Score=33.58 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=26.3
Q ss_pred cceEcCCCCCCCceEeccceEEEeccCCCc
Q 036389 156 GICKCSRCGHKRMSFIPLRRHITCLNCYQY 185 (198)
Q Consensus 156 ~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~ 185 (198)
-..+|+.|+...+-|.-..+-|.|..||..
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTI 62 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCC
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCE
Confidence 346999999999999988888999999975
No 24
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=83.31 E-value=0.51 Score=36.33 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=25.3
Q ss_pred eEcCCCCCCCceEe--ccceEEEeccCCCc
Q 036389 158 CKCSRCGHKRMSFI--PLRRHITCLNCYQY 185 (198)
Q Consensus 158 ~~C~~C~~~~~~~~--pmt~fv~C~~Cg~~ 185 (198)
..|+.|+.+.+.+. .-..|..|..||.+
T Consensus 103 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 68999999999998 67799999999986
No 25
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=80.04 E-value=0.87 Score=29.72 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=22.3
Q ss_pred eEcCCCCCCCceEeccceEEEeccCCC
Q 036389 158 CKCSRCGHKRMSFIPLRRHITCLNCYQ 184 (198)
Q Consensus 158 ~~C~~C~~~~~~~~pmt~fv~C~~Cg~ 184 (198)
..||.||+....|-+.+.-+.|..||-
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 379999997766667778899999995
No 26
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=78.26 E-value=1.5 Score=29.84 Aligned_cols=36 Identities=14% Similarity=0.328 Sum_probs=26.6
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCccccccc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYWASTNP 191 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W~~~~~ 191 (198)
-+...||.|++. -.|........|..||..|-.-+.
T Consensus 6 L~iL~CP~ck~~-L~~~~~~~~LiC~~cg~~YPI~dG 41 (70)
T 2js4_A 6 LDILVCPVCKGR-LEFQRAQAELVCNADRLAFPVRDG 41 (70)
T ss_dssp CCCCBCTTTCCB-EEEETTTTEEEETTTTEEEEEETT
T ss_pred hhheECCCCCCc-CEEeCCCCEEEcCCCCceecCCCC
Confidence 355799999994 455577778889999977765443
No 27
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=77.94 E-value=0.34 Score=37.39 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=23.1
Q ss_pred ccceEcCCCCCCCceEe--ccceEEEeccCCCc
Q 036389 155 YGICKCSRCGHKRMSFI--PLRRHITCLNCYQY 185 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~--pmt~fv~C~~Cg~~ 185 (198)
..-..|+.|+.+.+.+. .-..|..|..||.+
T Consensus 101 ~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 101 KAYVECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp SCCSSCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred HHeeECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 34478999999999998 66789999999975
No 28
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.79 E-value=1.3 Score=34.88 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=25.7
Q ss_pred eEcCCCCCCCceEe----ccceEEEeccCCCccc
Q 036389 158 CKCSRCGHKRMSFI----PLRRHITCLNCYQYWA 187 (198)
Q Consensus 158 ~~C~~C~~~~~~~~----pmt~fv~C~~Cg~~W~ 187 (198)
..|+.|+.+.+.+. --..|..|..||.+--
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCCc
Confidence 58999999999998 3569999999998643
No 29
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=76.37 E-value=1.8 Score=29.21 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=28.3
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCcccccccccccc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYWASTNPEIRVL 196 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W~~~~~~~~~~ 196 (198)
-+...||.|++. -.|........|..||..+-.- +.|-+|
T Consensus 6 L~iL~CP~ck~~-L~~~~~~~~LiC~~cg~~YPI~-dGIPvm 45 (68)
T 2hf1_A 6 LEILVCPLCKGP-LVFDKSKDELICKGDRLAFPIK-DGIPMM 45 (68)
T ss_dssp EEECBCTTTCCB-CEEETTTTEEEETTTTEEEEEE-TTEECC
T ss_pred hhheECCCCCCc-CeEeCCCCEEEcCCCCcEecCC-CCeeee
Confidence 355789999985 5556777888899999766554 444433
No 30
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=76.35 E-value=1.9 Score=29.06 Aligned_cols=40 Identities=8% Similarity=0.130 Sum_probs=28.3
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCcccccccccccc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYWASTNPEIRVL 196 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W~~~~~~~~~~ 196 (198)
-+...||.|++. -.|........|..||..+-.- +.|-+|
T Consensus 6 L~iL~CP~ck~~-L~~~~~~~~LiC~~cg~~YPI~-dGIPvm 45 (68)
T 2jr6_A 6 LDILVCPVTKGR-LEYHQDKQELWSRQAKLAYPIK-DGIPYM 45 (68)
T ss_dssp SCCCBCSSSCCB-CEEETTTTEEEETTTTEEEEEE-TTEECC
T ss_pred hhheECCCCCCc-CeEeCCCCEEEcCCCCcEecCC-CCeeee
Confidence 356799999985 5556777888899999766554 444443
No 31
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=74.64 E-value=2.1 Score=33.98 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=26.2
Q ss_pred eEcCCCCCCCceEe----ccceEEEeccCCCcccc
Q 036389 158 CKCSRCGHKRMSFI----PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 158 ~~C~~C~~~~~~~~----pmt~fv~C~~Cg~~W~~ 188 (198)
..|+.|+.+.+.+. --..|..|..||.+--+
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V 131 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGML 131 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCS
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCcccc
Confidence 58999999999998 25689999999987543
No 32
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=74.55 E-value=1.3 Score=34.32 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=12.7
Q ss_pred ceEEEeccCCCcccc
Q 036389 174 RRHITCLNCYQYWAS 188 (198)
Q Consensus 174 t~fv~C~~Cg~~W~~ 188 (198)
...+.|.+||+.|++
T Consensus 67 ~g~I~C~~Cgq~WG~ 81 (145)
T 3eqt_A 67 GGVISCRNCGEVWGL 81 (145)
T ss_dssp EEEEEETTTCCEEEE
T ss_pred CcEEEchhhChhhHh
Confidence 466889999999985
No 33
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=72.11 E-value=2.7 Score=28.46 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=28.1
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCcccccccccccc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYWASTNPEIRVL 196 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W~~~~~~~~~~ 196 (198)
-+...||.|++. -.|........|..||..+-.- +.|-+|
T Consensus 6 LeiL~CP~ck~~-L~~~~~~~~LiC~~cg~~YPI~-dGIPvm 45 (69)
T 2pk7_A 6 LDILACPICKGP-LKLSADKTELISKGAGLAYPIR-DGIPVM 45 (69)
T ss_dssp GGTCCCTTTCCC-CEECTTSSEEEETTTTEEEEEE-TTEECC
T ss_pred HhheeCCCCCCc-CeEeCCCCEEEcCCCCcEecCc-CCeeee
Confidence 355789999986 4455677888999999766554 444433
No 34
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=71.92 E-value=2.2 Score=35.84 Aligned_cols=28 Identities=21% Similarity=0.757 Sum_probs=23.7
Q ss_pred eEcCCCCCCCceEe----ccceEEEeccCCCcc
Q 036389 158 CKCSRCGHKRMSFI----PLRRHITCLNCYQYW 186 (198)
Q Consensus 158 ~~C~~C~~~~~~~~----pmt~fv~C~~Cg~~W 186 (198)
+.||.||...-.-+ |.-.|+ |.+|+..+
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~-C~~C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFY-CNHCSEEF 66 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEE-CTTTCCEE
T ss_pred CcCCCCCChhhhhccCCCcccccc-cCCcchhh
Confidence 58999999877555 999998 99999875
No 35
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated protein; KIX, 3 helical bundle, transcription; NMR {Homo sapiens}
Probab=71.45 E-value=9.1 Score=26.49 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHHHhhhhhhccccchhhhhhcccChHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 036389 21 DCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFN 91 (198)
Q Consensus 21 d~iR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~~~~A~~IE~alf~~~~~~~~~Yk~k~Rsl~~NLk 91 (198)
...|+++...+-+++...-... ..-|.++|+.+|... .+..+|-..+--|+..++
T Consensus 12 ~~FRq~vi~~i~~a~~~~G~~~---------------~k~a~emEnhvF~Ka-~tkdEYL~lvarli~h~r 66 (77)
T 2gut_A 12 TAFRQKLVSQIEDAMRKAGVAH---------------SKSSKDMESHVFLKA-KTRDEYLSLVARLIIHFR 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCC---------------SSCHHHHHHHHHHHC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhCCCC---------------CCCHHHHHHHHHhcc-CcccchHHHHHHHHHHHH
Confidence 5689999999999998732211 122778999999874 345789888877777765
No 36
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=70.77 E-value=3.3 Score=27.86 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=28.2
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCcccccccccccc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYWASTNPEIRVL 196 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W~~~~~~~~~~ 196 (198)
-+...||.|++. -.|........|..||..|-.. +.|-+|
T Consensus 8 LeiL~CP~ck~~-L~~~~~~g~LvC~~c~~~YPI~-dGIPvm 47 (67)
T 2jny_A 8 LEVLACPKDKGP-LRYLESEQLLVNERLNLAYRID-DGIPVL 47 (67)
T ss_dssp TCCCBCTTTCCB-CEEETTTTEEEETTTTEEEEEE-TTEECC
T ss_pred HHHhCCCCCCCc-CeEeCCCCEEEcCCCCccccCC-CCEeee
Confidence 356799999994 5566777778899999766554 444333
No 37
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=70.49 E-value=1.5 Score=29.36 Aligned_cols=29 Identities=24% Similarity=0.571 Sum_probs=21.0
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQY 185 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~ 185 (198)
.-.+.|+.||..-- . ....-+.|..||+|
T Consensus 19 ~v~Y~C~~Cg~~~~-l-~~~~~iRC~~CG~R 47 (63)
T 3h0g_L 19 TMIYLCADCGARNT-I-QAKEVIRCRECGHR 47 (63)
T ss_dssp CCCCBCSSSCCBCC-C-CSSSCCCCSSSCCC
T ss_pred CeEEECCCCCCeee-c-CCCCceECCCCCcE
Confidence 45589999987643 2 23455889999998
No 38
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=69.99 E-value=2.9 Score=28.39 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=22.3
Q ss_pred eEcCCCCCCCce-------Ee--------ccceEEEeccCCCcccc
Q 036389 158 CKCSRCGHKRMS-------FI--------PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 158 ~~C~~C~~~~~~-------~~--------pmt~fv~C~~Cg~~W~~ 188 (198)
.+|+-||+.... |. +.-....|.+||..|-.
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence 489999976432 21 66667789999999854
No 39
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=69.20 E-value=1.6 Score=31.37 Aligned_cols=28 Identities=32% Similarity=0.765 Sum_probs=17.3
Q ss_pred cccceEcCCCCCCCceEe--ccceEEEeccCCCc
Q 036389 154 VYGICKCSRCGHKRMSFI--PLRRHITCLNCYQY 185 (198)
Q Consensus 154 ~t~~~~C~~C~~~~~~~~--pmt~fv~C~~Cg~~ 185 (198)
.--.|+|+ |+++-++|. |. ..|.+||..
T Consensus 45 ~KRFFkC~-C~~Rt~sl~r~P~---~~C~~Cg~~ 74 (92)
T 2kwq_A 45 VKRFFKCP-CGNRTISLDRLPK---KHCSTCGLF 74 (92)
T ss_dssp ECEEEECT-TSCEEEESSSSCC---SCCTTTCSC
T ss_pred eEEEEECC-CCCceeEeeeCCC---CCCCCCCCC
Confidence 34567776 777777665 33 247777754
No 40
>2k0n_A Mediator of RNA polymerase II transcription subunit 15; protein, activator, nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae}
Probab=66.92 E-value=26 Score=24.37 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHHHHhhhhhhccccchhhhhhcccChHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 036389 20 NDCIREIVRKNLYGALSKVSIEAAHDKNVIDQVKACNPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFN 91 (198)
Q Consensus 20 ~d~iR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~~~~A~~IE~alf~~~~~~~~~Yk~k~Rsl~~NLk 91 (198)
+..-|.+-..-|...|+....-.+++....+. ...-|.+.|.+||... ++...|-+-+|..+...+
T Consensus 8 s~~ERsknv~eL~qiLmDIn~iNGG~~~~~EK-----lk~~A~~FEaaLyaks-SSK~eYmdsMr~ki~aMr 73 (85)
T 2k0n_A 8 SNAERAKNVNGLLQVLMDINTLNGGSSDTADK-----IRIHAKNFEAALFAKS-SSKKEYMDSMNEKVAVMR 73 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCSTTHHHH-----HHHHHHHHHHHHHHSC-CSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCchhHHHH-----HHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHH
Confidence 34567777778888887654333332112221 2455999999999874 445799999999887774
No 41
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=65.02 E-value=2.5 Score=32.79 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=26.2
Q ss_pred cccceEcCCCCCCCceEe-----------------------------------ccceEEEec--cCCCcccc
Q 036389 154 VYGICKCSRCGHKRMSFI-----------------------------------PLRRHITCL--NCYQYWAS 188 (198)
Q Consensus 154 ~t~~~~C~~C~~~~~~~~-----------------------------------pmt~fv~C~--~Cg~~W~~ 188 (198)
.+-.+.|.+|+..-|+-. -++..+.|. +||+.|.+
T Consensus 24 ~~v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~~~y~v~~~~~~k~f~d~~~~g~I~C~~~~Cg~~WG~ 95 (145)
T 2qfd_A 24 ENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGI 95 (145)
T ss_dssp CCCEEEETTTCCEEEEGGGEEEETTTEEEECSTTGGGTEEEEECSSCCCCSSEEEEEEEEECSTTTCCEEEE
T ss_pred cceEEEccCCCeeEEcccceeEecCCcEEecCcCceeeEEEcCCcccchhhceeCCceEEeCCcccCcchhc
Confidence 456689999988766533 245678899 99999975
No 42
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=64.32 E-value=5.3 Score=36.74 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=11.0
Q ss_pred eEEEeccCCCcccc
Q 036389 175 RHITCLNCYQYWAS 188 (198)
Q Consensus 175 ~fv~C~~Cg~~W~~ 188 (198)
-.+.|. ||++|..
T Consensus 640 ~~~~c~-~~~~~g~ 652 (699)
T 4gl2_A 640 GEIICK-CGQAWGT 652 (699)
T ss_dssp CEEECS-SSCEEEE
T ss_pred CcEEee-cCchhhH
Confidence 667899 9999975
No 43
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=64.10 E-value=5.1 Score=25.26 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=21.8
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQY 185 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~ 185 (198)
-..-.||+||.. ....+...-..|..||..
T Consensus 17 ~~~k~CP~CG~~-~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 17 RKNKFCPRCGPG-VFMADHGDRWACGKCGYT 46 (50)
T ss_dssp CSSEECSSSCSS-CEEEECSSEEECSSSCCE
T ss_pred EecccCCCCCCc-eEEecCCCeEECCCCCCE
Confidence 345679999985 333366677789999976
No 44
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=62.86 E-value=1.6 Score=29.70 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=20.2
Q ss_pred cccceEcCCCCCCCceEeccceEEEeccCCCc
Q 036389 154 VYGICKCSRCGHKRMSFIPLRRHITCLNCYQY 185 (198)
Q Consensus 154 ~t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~ 185 (198)
..-.+.|+.||..--. . ...-+.|..||+|
T Consensus 25 ~~v~Y~C~~CG~~~e~-~-~~d~irCp~CG~R 54 (70)
T 1twf_L 25 ATLKYICAECSSKLSL-S-RTDAVRCKDCGHR 54 (70)
T ss_dssp CCCCEECSSSCCEECC-C-TTSTTCCSSSCCC
T ss_pred ceEEEECCCCCCccee-C-CCCCccCCCCCce
Confidence 4567899999986211 1 2233579999996
No 45
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=61.51 E-value=28 Score=24.14 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHHHHHHHhhhhhhccccchhh-hhhcccChHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcC
Q 036389 19 CNDCIREIVRKNLYGALSKVSIEAAHDKNVI-DQVKACNPIQVAISMESAMYEKWGRSSETYKFKYRRLLFNFN 91 (198)
Q Consensus 19 ~~d~iR~k~r~~L~~aL~~~~~e~~~~~~~~-~~~~~~~~~~~A~~IE~alf~~~~~~~~~Yk~k~Rsl~~NLk 91 (198)
-...+|+..+..|..++..... +.. .. .++ .+....|..+|..+|+... +..+|-.-+...+.++.
T Consensus 10 vt~~lR~hlv~Klv~aI~P~pd--p~a--~~d~rm--~~l~~yArkvE~~~ye~A~-srdeYY~llA~kiykiq 76 (81)
T 1kdx_A 10 VTQDLRSHLVHKLVQAIFPTPD--PAA--LKDRRM--ENLVAYAKKVEGDMYESAN-SRDEYYHLLAEKIYKIQ 76 (81)
T ss_dssp SCHHHHHHHHHHHHHHHSCCSS--GGG--GGSHHH--HHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCCCC--hhh--hhhHHH--HHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence 3478999999999999987532 111 11 011 1246779999999998753 34677776666666654
No 46
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=60.64 E-value=3.1 Score=26.28 Aligned_cols=20 Identities=30% Similarity=0.730 Sum_probs=13.0
Q ss_pred EEEeccCCCccccccccccccc
Q 036389 176 HITCLNCYQYWASTNPEIRVLP 197 (198)
Q Consensus 176 fv~C~~Cg~~W~~~~~~~~~~~ 197 (198)
.|.|..||+. |+.++.++||
T Consensus 3 iY~C~rCg~~--fs~~el~~lP 22 (48)
T 4ayb_P 3 VYRCGKCWKT--FTDEQLKVLP 22 (48)
T ss_dssp --CCCCTTTT--CCCCCSCCCS
T ss_pred EEEeeccCCC--ccHHHHhhCC
Confidence 3567777776 4777777776
No 47
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=59.87 E-value=3.8 Score=31.27 Aligned_cols=14 Identities=36% Similarity=0.873 Sum_probs=11.6
Q ss_pred ceEEEeccCCCcccc
Q 036389 174 RRHITCLNCYQYWAS 188 (198)
Q Consensus 174 t~fv~C~~Cg~~W~~ 188 (198)
...+.|. ||+.|.+
T Consensus 65 ~g~I~C~-Cgq~WG~ 78 (133)
T 3ga3_A 65 NGEIICK-CGQAWGT 78 (133)
T ss_dssp EEEEEET-TSCEEEE
T ss_pred CceEEEe-cCChhhh
Confidence 4667899 9999985
No 48
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=57.72 E-value=5.2 Score=25.74 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=23.0
Q ss_pred cccceEcCCCCCCCceEeccceEEEeccCCCcc
Q 036389 154 VYGICKCSRCGHKRMSFIPLRRHITCLNCYQYW 186 (198)
Q Consensus 154 ~t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W 186 (198)
.-.+..||+||..- .+-+.-..+.|.+||-..
T Consensus 15 ~~~~~fCPkCG~~~-~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 15 VRKHRFCPRCGPGV-FLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CCSSCCCTTTTTTC-CCEECSSEEECTTTCCCE
T ss_pred EEccccCcCCCCce-eEeccCCEEECCCCCCEE
Confidence 34568899999853 222666788899999874
No 49
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=56.51 E-value=4.4 Score=30.41 Aligned_cols=16 Identities=38% Similarity=0.821 Sum_probs=12.9
Q ss_pred cceEEEec--cCCCcccc
Q 036389 173 LRRHITCL--NCYQYWAS 188 (198)
Q Consensus 173 mt~fv~C~--~Cg~~W~~ 188 (198)
..-.+.|. +||+.|.+
T Consensus 56 ~~g~I~C~~~~Cg~~WG~ 73 (121)
T 3lrr_A 56 KRAKIFCARQNCSHDWGI 73 (121)
T ss_dssp EEEEEEECSTTTCCEEEE
T ss_pred CCcEEEeCccccChhhhh
Confidence 35667899 99999975
No 50
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=54.74 E-value=5.7 Score=29.45 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=22.6
Q ss_pred ceEcCCCCCCC-----ceEe--cc---ceEEEeccCCCccccc
Q 036389 157 ICKCSRCGHKR-----MSFI--PL---RRHITCLNCYQYWAST 189 (198)
Q Consensus 157 ~~~C~~C~~~~-----~~~~--pm---t~fv~C~~Cg~~W~~~ 189 (198)
...|.+|+..- ++.. .- ...++|+.||+.-+|-
T Consensus 65 R~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 65 RRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp TSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 35899998732 2333 22 5788999999976653
No 51
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=53.57 E-value=1.5 Score=27.41 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=24.0
Q ss_pred ceEcCCCCCCCceEe---ccceEEEeccCCCcccc
Q 036389 157 ICKCSRCGHKRMSFI---PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 157 ~~~C~~C~~~~~~~~---pmt~fv~C~~Cg~~W~~ 188 (198)
...|..|+..++..+ |.-. .-|+.||-+|+-
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~ 37 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGH-YLCNACGLYHKM 37 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHH
Confidence 357999999988655 5444 679999998875
No 52
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=53.52 E-value=5.5 Score=30.29 Aligned_cols=16 Identities=25% Similarity=0.746 Sum_probs=13.0
Q ss_pred cceEEEec--cCCCcccc
Q 036389 173 LRRHITCL--NCYQYWAS 188 (198)
Q Consensus 173 mt~fv~C~--~Cg~~W~~ 188 (198)
..-.+.|. +||+.|.+
T Consensus 58 ~~g~I~C~~~~Cg~~WG~ 75 (131)
T 4a2v_A 58 KKSKMYCRNNNCQHDWGI 75 (131)
T ss_dssp EEEEEEESCTTTCCEEEE
T ss_pred CCcEEEeCccccChhhhh
Confidence 35668899 99999975
No 53
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.71 E-value=8.5 Score=27.02 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=22.7
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCcc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYW 186 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W 186 (198)
...+.|+.||..+. -...+-.-.|..||..|
T Consensus 33 ~~ky~CpfCGk~~v-kR~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 33 RQKHTCPVCGRKAV-KRISTGIWQCQKCGATF 63 (83)
T ss_dssp HSCBCCSSSCSSCE-EEEETTEEEETTTCCEE
T ss_pred hcccCCCCCCCcee-EecCcCeEEcCCCCCEE
Confidence 34578999998842 22567778899998875
No 54
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=51.61 E-value=2 Score=26.42 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=22.5
Q ss_pred EcCCCCCCCceEe---ccceEEEeccCCCcccc
Q 036389 159 KCSRCGHKRMSFI---PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 159 ~C~~C~~~~~~~~---pmt~fv~C~~Cg~~W~~ 188 (198)
.|..|+...+..+ |.-. .-|+.||-+|+.
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~ 34 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKL 34 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSC-EECHHHHHHHHH
T ss_pred cCCccCCCCCCccccCCCCC-cccHHHHHHHHH
Confidence 5889999887555 5544 679999998875
No 55
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=50.04 E-value=6.6 Score=29.27 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=22.4
Q ss_pred ceEcCCCCCCC-----ceEe--cc---ceEEEeccCCCccccc
Q 036389 157 ICKCSRCGHKR-----MSFI--PL---RRHITCLNCYQYWAST 189 (198)
Q Consensus 157 ~~~C~~C~~~~-----~~~~--pm---t~fv~C~~Cg~~W~~~ 189 (198)
...|.+|+..- ++.. .- ...++|+.||+.-+|-
T Consensus 60 R~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 60 RRYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp TSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred HHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 35899998732 2333 22 4788999999876653
No 56
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=49.17 E-value=6.9 Score=23.52 Aligned_cols=13 Identities=23% Similarity=0.647 Sum_probs=9.6
Q ss_pred cccceEcCCCCCC
Q 036389 154 VYGICKCSRCGHK 166 (198)
Q Consensus 154 ~t~~~~C~~C~~~ 166 (198)
..+.+.|++||..
T Consensus 6 ~~~~~~C~~C~~~ 18 (39)
T 2i5o_A 6 AEDQVPCEKCGSL 18 (39)
T ss_dssp CCCEEECTTTCCE
T ss_pred cCCCcccccccCc
Confidence 4567889999864
No 57
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.34 E-value=5.5 Score=25.42 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=16.9
Q ss_pred cceEcCCCCCCCceEeccceEEEeccCCCc
Q 036389 156 GICKCSRCGHKRMSFIPLRRHITCLNCYQY 185 (198)
Q Consensus 156 ~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~ 185 (198)
+...|++|+.+ .| +.-..|..||+.
T Consensus 13 ~k~iCpkC~a~----~~-~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGAT----NP-WGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCE----EC-TTCSSCSSSSSC
T ss_pred CCccCCCCCCc----CC-CCceecCCCCCc
Confidence 34678888887 22 444568888876
No 58
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=48.27 E-value=9.6 Score=33.02 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=20.4
Q ss_pred eEcCCCCCC--CceEeccceEEEeccCC
Q 036389 158 CKCSRCGHK--RMSFIPLRRHITCLNCY 183 (198)
Q Consensus 158 ~~C~~C~~~--~~~~~pmt~fv~C~~Cg 183 (198)
..||.||+. ...+-+-+-.+.|..||
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G~~vC~~CG 49 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEGDVVCALCG 49 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGTEEEETTTC
T ss_pred CcCCCCCCCCCceeEECCCCcEEeCCCC
Confidence 479999983 33333888999999999
No 59
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=47.96 E-value=5.3 Score=35.35 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=25.7
Q ss_pred cceEcCCCCCCCceEe-ccceEEEeccCCCccccccc
Q 036389 156 GICKCSRCGHKRMSFI-PLRRHITCLNCYQYWASTNP 191 (198)
Q Consensus 156 ~~~~C~~C~~~~~~~~-pmt~fv~C~~Cg~~W~~~~~ 191 (198)
-.++|.+|+.+...+. | ..-..|..||.+|..+-|
T Consensus 243 ~v~~C~~C~~~~~~~~~~-~~~~~C~~cg~~~~~~GP 278 (392)
T 3axs_A 243 YIQYCFNCMNREVVTDLY-KFKEKCPHCGSKFHIGGP 278 (392)
T ss_dssp EEEECTTTCCEEEECCGG-GCCSBCTTTCSBCEEEEE
T ss_pred eEEECCCCCCeEeecCCC-CCCCcCCCCCCccceecc
Confidence 3578999999876553 2 234569999999987765
No 60
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=47.89 E-value=5.2 Score=21.75 Aligned_cols=10 Identities=40% Similarity=0.810 Sum_probs=7.8
Q ss_pred ccCCCccccc
Q 036389 180 LNCYQYWAST 189 (198)
Q Consensus 180 ~~Cg~~W~~~ 189 (198)
.+||+.|..+
T Consensus 16 dncgnswacs 25 (27)
T 2hgo_A 16 DNCGNSWACS 25 (27)
T ss_dssp CSSSCEEECS
T ss_pred CCcCCccccc
Confidence 3799999754
No 61
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=46.96 E-value=10 Score=27.07 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=22.6
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCcc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYW 186 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W 186 (198)
...+.|+-||..... ...+-.-.|..||..|
T Consensus 34 ~~ky~CpfCgk~~vk-R~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 34 HSKYFCEFCGKFAVK-RKAVGIWGCKDCGKVK 64 (92)
T ss_dssp HSCBCCTTTCSSCBE-EEETTEEECSSSCCEE
T ss_pred hccccCcccCCCeeE-ecCcceEEcCCCCCEE
Confidence 345789999988532 2567777899998864
No 62
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=45.67 E-value=13 Score=27.75 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=22.5
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCcc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYW 186 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W 186 (198)
...+.|+.||.. .-..-.+-.-.|..||..|
T Consensus 58 ~akytCPfCGk~-~vKR~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 58 NEDHACPNCGED-RVDRQGTGIWQCSYCDYKF 88 (116)
T ss_dssp HSCEECSSSCCE-EEEEEETTEEEETTTCCEE
T ss_pred ccCCcCCCCCCc-eeEecCceeEECCCCCCEE
Confidence 455899999863 2333567788999999873
No 63
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=45.43 E-value=17 Score=28.12 Aligned_cols=26 Identities=27% Similarity=0.632 Sum_probs=20.2
Q ss_pred eEcCCCCCCCceEe--ccceEEEeccCCC
Q 036389 158 CKCSRCGHKRMSFI--PLRRHITCLNCYQ 184 (198)
Q Consensus 158 ~~C~~C~~~~~~~~--pmt~fv~C~~Cg~ 184 (198)
-.|..||.+...|. ..-+|+ |..|..
T Consensus 39 ~~CaDCga~~P~WaS~nlGvfi-C~~CSg 66 (147)
T 3dwd_A 39 NVCFECGAFNPQWVSVTYGIWI-CLECSG 66 (147)
T ss_dssp TBCTTTCCBSCCEEETTTTEEE-CHHHHH
T ss_pred CccCCCCCCCCCeEEecccEeE-hHhhCh
Confidence 38999999999998 444555 998863
No 64
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.27 E-value=1.7 Score=27.60 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=24.9
Q ss_pred cccceEcCCCCCCCceEeccceEEEeccCCCcccccc
Q 036389 154 VYGICKCSRCGHKRMSFIPLRRHITCLNCYQYWASTN 190 (198)
Q Consensus 154 ~t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W~~~~ 190 (198)
..+.+.||+|+..--...|+..+. |.-||.-|.|..
T Consensus 9 ~~~~~~CPrCn~~f~~~~sLr~Hm-kycCp~~v~~~~ 44 (49)
T 2e72_A 9 DGGRKICPRCNAQFRVTEALRGHM-CYCCPEMVEYQS 44 (49)
T ss_dssp CSSCCCCTTTCCCCSSHHHHHHHH-HHHCTTTCCCCC
T ss_pred cCCceeCCcccccccchHHHHhhh-hhcCcchhhhhc
Confidence 347799999997643333666655 567888887764
No 65
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=44.91 E-value=13 Score=29.95 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=21.4
Q ss_pred ceEcCCCCCCCc--eEeccceEEEeccCCC
Q 036389 157 ICKCSRCGHKRM--SFIPLRRHITCLNCYQ 184 (198)
Q Consensus 157 ~~~C~~C~~~~~--~~~pmt~fv~C~~Cg~ 184 (198)
...|+.||+... -+-+-+--+.|.+||-
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGL 50 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCB
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCC
Confidence 348999999543 3337888889999995
No 66
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=44.30 E-value=4.2 Score=27.28 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=25.8
Q ss_pred ccceEcCCCCCCCceEe---ccceEEEeccCCCcccc
Q 036389 155 YGICKCSRCGHKRMSFI---PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~---pmt~fv~C~~Cg~~W~~ 188 (198)
.....|..|+...+... |.-. .-|+.||-.|+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~ 42 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKL 42 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHH
Confidence 34568999999988655 6555 779999998875
No 67
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.23 E-value=6.3 Score=28.90 Aligned_cols=30 Identities=23% Similarity=0.669 Sum_probs=23.2
Q ss_pred ccceEcCCCCCCCceEe-ccceEEEeccCCCccc
Q 036389 155 YGICKCSRCGHKRMSFI-PLRRHITCLNCYQYWA 187 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~-pmt~fv~C~~Cg~~W~ 187 (198)
.-.++|..||.. |. ++..-..|-.|+..|-
T Consensus 65 v~p~~C~~CG~~---F~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 65 IKPAQCRKCGFV---FKAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp ECCCBBTTTCCB---CCCCSSCCSSCSSSCCCCB
T ss_pred EECcChhhCcCe---ecccCCCCCCCcCCCCCcc
Confidence 445899999987 33 5666688999999983
No 68
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=42.24 E-value=13 Score=32.01 Aligned_cols=33 Identities=27% Similarity=0.641 Sum_probs=21.5
Q ss_pred ceEcCCCCCC-CceEe---c--------cceEEEeccCCCccccc
Q 036389 157 ICKCSRCGHK-RMSFI---P--------LRRHITCLNCYQYWAST 189 (198)
Q Consensus 157 ~~~C~~C~~~-~~~~~---p--------mt~fv~C~~Cg~~W~~~ 189 (198)
..+|+.||.. +-.|+ + .....+|..||+.+|.-
T Consensus 222 R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~ 266 (309)
T 2fiy_A 222 RIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQF 266 (309)
T ss_dssp TTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEE
T ss_pred CcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhhh
Confidence 4466777764 33444 2 23577899999988864
No 69
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=40.90 E-value=15 Score=26.84 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=22.4
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCcc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYW 186 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W 186 (198)
...+.|+-||..+. -...+-.-.|..||..|
T Consensus 34 ~aky~CpfCgk~~v-KR~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 34 HAKYGCPFCGKVAV-KRAAVGIWKCKPCKKII 64 (103)
T ss_dssp HSCEECTTTCCEEE-EEEETTEEEETTTTEEE
T ss_pred hcCCCCCCCCCcee-eecCcceEEcCCCCCEE
Confidence 44589999987742 22567777899998764
No 70
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=40.81 E-value=21 Score=24.09 Aligned_cols=30 Identities=20% Similarity=0.565 Sum_probs=20.7
Q ss_pred ceEcCCCCCCCceEe-ccceEEEeccCCCcccccc
Q 036389 157 ICKCSRCGHKRMSFI-PLRRHITCLNCYQYWASTN 190 (198)
Q Consensus 157 ~~~C~~C~~~~~~~~-pmt~fv~C~~Cg~~W~~~~ 190 (198)
.|.|+ ||.. .|. +-..-..|. ||.+-++..
T Consensus 4 vv~C~-C~~~--~~~~~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 4 IFRCD-CGRA--LYSREGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EEEET-TSCC--EEEETTCSEEEET-TTEEEECCS
T ss_pred EEECC-CCCE--EEEcCCCcEEECC-CCCeeeece
Confidence 47899 9875 444 555666787 998866543
No 71
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=39.59 E-value=7.7 Score=33.46 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=21.2
Q ss_pred ceEcCCCCCC--CceEeccceEEEeccCCC
Q 036389 157 ICKCSRCGHK--RMSFIPLRRHITCLNCYQ 184 (198)
Q Consensus 157 ~~~C~~C~~~--~~~~~pmt~fv~C~~Cg~ 184 (198)
...||.||+. ...+-+.+-.+.|.+||-
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~ 50 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCe
Confidence 3479999997 344447778889999994
No 72
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=39.15 E-value=15 Score=25.21 Aligned_cols=12 Identities=25% Similarity=0.999 Sum_probs=6.8
Q ss_pred eEEEeccCCCcc
Q 036389 175 RHITCLNCYQYW 186 (198)
Q Consensus 175 ~fv~C~~Cg~~W 186 (198)
.+..|.+|+..|
T Consensus 50 ~~~FC~~C~~~w 61 (86)
T 2ct7_A 50 HQTFCVRCKRQW 61 (86)
T ss_dssp CCEECSSSCSBC
T ss_pred CCccccccCCch
Confidence 344455666666
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=38.59 E-value=16 Score=29.97 Aligned_cols=35 Identities=23% Similarity=0.611 Sum_probs=24.8
Q ss_pred ceEcCCCCCCCceEe--------ccceEEEeccCCCcccccccccc
Q 036389 157 ICKCSRCGHKRMSFI--------PLRRHITCLNCYQYWASTNPEIR 194 (198)
Q Consensus 157 ~~~C~~C~~~~~~~~--------pmt~fv~C~~Cg~~W~~~~~~~~ 194 (198)
..+|+.|+. .|. -...-..|..|++.|..-.|++.
T Consensus 193 g~~C~~C~~---~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~~~ 235 (238)
T 3nw0_A 193 GQSCETCGI---RMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKVF 235 (238)
T ss_dssp CEECSSSCC---EECHHHHHHHTTTCSSCBCTTTCCBCCSCCCCCC
T ss_pred CcccCccCh---HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Confidence 467887763 344 33345689999999998888764
No 74
>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone, chaperone; 2.70A {Escherichia coli} SCOP: d.193.1.1 PDB: 1xjh_A
Probab=38.46 E-value=6.6 Score=33.46 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=5.0
Q ss_pred ccceEcCCCCCCCceEe----------cc-----ceEEEeccCCCcccccccccccc
Q 036389 155 YGICKCSRCGHKRMSFI----------PL-----RRHITCLNCYQYWASTNPEIRVL 196 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~----------pm-----t~fv~C~~Cg~~W~~~~~~~~~~ 196 (198)
.-.|.|+ |...++.=. -| ..-++|.=||+.+.|+..++.-|
T Consensus 225 ~v~f~C~-CSrer~~~aL~slg~~El~~mi~e~g~iev~C~FC~~~Y~F~~~dl~~l 280 (292)
T 1i7f_A 225 DVEFKCT-CSRERSADALKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMDIAEI 280 (292)
T ss_dssp CCCCCCC--------------------------------------------------
T ss_pred CCCeeCC-CCHHHHHHHHHhCCHHHHHHHHHcCCCEEEEeeCCCCEEEeCHHHHHHH
Confidence 4468887 777666443 22 57899999999999999998755
No 75
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=38.27 E-value=12 Score=21.72 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=8.8
Q ss_pred ceEEEeccCCCc
Q 036389 174 RRHITCLNCYQY 185 (198)
Q Consensus 174 t~fv~C~~Cg~~ 185 (198)
..||.|..|||-
T Consensus 4 ~~fY~C~~CGni 15 (36)
T 1dxg_A 4 GDVYKCELCGQV 15 (36)
T ss_dssp TCEEECTTTCCE
T ss_pred ccEEEcCCCCcE
Confidence 357888888874
No 76
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=38.03 E-value=26 Score=26.64 Aligned_cols=26 Identities=27% Similarity=0.745 Sum_probs=20.9
Q ss_pred eEcCCCCCCCceEe--ccceEEEeccCCC
Q 036389 158 CKCSRCGHKRMSFI--PLRRHITCLNCYQ 184 (198)
Q Consensus 158 ~~C~~C~~~~~~~~--pmt~fv~C~~Cg~ 184 (198)
-.|..||.....|- ..-+|+ |..|..
T Consensus 37 ~~CaDCga~~P~WaS~n~Gvfi-C~~Csg 64 (138)
T 2owa_A 37 RTCFDCESRNPTWLSLSFAVFI-CLNCSS 64 (138)
T ss_dssp GBCTTTCCBSCCEEETTTTEEE-CHHHHH
T ss_pred CcCCCCcCCCCCeEEecCCEEE-hHhhhH
Confidence 48999999999988 555776 998863
No 77
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=37.15 E-value=11 Score=22.23 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=16.1
Q ss_pred eEcCCCCCCCceEe---------ccceEEEeccCCCccc
Q 036389 158 CKCSRCGHKRMSFI---------PLRRHITCLNCYQYWA 187 (198)
Q Consensus 158 ~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~ 187 (198)
|.|+.|+..-..-. .-..-+.|..||..+.
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence 56777775432222 1223366877877653
No 78
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=36.70 E-value=24 Score=24.96 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=24.8
Q ss_pred cceEcCCCCCCCceEe--ccceEEEeccCCCc
Q 036389 156 GICKCSRCGHKRMSFI--PLRRHITCLNCYQY 185 (198)
Q Consensus 156 ~~~~C~~C~~~~~~~~--pmt~fv~C~~Cg~~ 185 (198)
-...||-|+.+.-+|. |-+..+.|-.||..
T Consensus 36 ~~~~CPfh~e~~pSf~V~~~k~~~~Cf~cg~g 67 (103)
T 1d0q_A 36 YFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAG 67 (103)
T ss_dssp EEECCSSSCCSSCCEEEETTTTEEEETTTCCE
T ss_pred EEEECCCCCCCCCcEEEEcCCCEEEECCCCCC
Confidence 3578999998876777 88889999999953
No 79
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=35.93 E-value=17 Score=25.93 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=21.7
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCcc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYW 186 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W 186 (198)
...+.|+-||..+.. ...+-.-.|..||..|
T Consensus 34 ~~ky~CpfCgk~~vk-R~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 34 HARYDCSFCGKKTVK-RGAAGIWTCSCCKKTV 64 (92)
T ss_dssp HSCCCCSSSCSSCCE-EEETTEEECTTTCCEE
T ss_pred hcCCcCCCCCCceee-ecccceEEcCCCCCEE
Confidence 345789999977532 2556677899998764
No 80
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=35.92 E-value=21 Score=24.34 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=20.7
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQY 185 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~ 185 (198)
...+.|+-||..+. -...+-...|..||..
T Consensus 25 ~~ky~C~fCgk~~v-kR~a~GIW~C~~C~~~ 54 (73)
T 1ffk_W 25 KKKYKCPVCGFPKL-KRASTSIWVCGHCGYK 54 (73)
T ss_pred ccCccCCCCCCcee-EEEEeEEEECCCCCcE
Confidence 34578999986532 2245677889999887
No 81
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=35.62 E-value=12 Score=28.54 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=20.3
Q ss_pred cccceEcCCCCCCCceEeccceEEEeccCCCc
Q 036389 154 VYGICKCSRCGHKRMSFIPLRRHITCLNCYQY 185 (198)
Q Consensus 154 ~t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~ 185 (198)
.+=.++|..||..--. +.....|-.||+.
T Consensus 129 ~~~~y~C~~Cg~~~~~---~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 129 IKWRYVCIGCGRKFST---LPPGGVCPDCGSK 157 (165)
T ss_dssp CCCCEEESSSCCEESS---CCGGGBCTTTCCB
T ss_pred ccEEEECCCCCCcccC---CCCCCcCCCCCCc
Confidence 4567999999975322 2334579999986
No 82
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=35.24 E-value=12 Score=23.52 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=22.9
Q ss_pred cccceEcCCCCCCCceEe---------ccceEEEeccCCCcccc
Q 036389 154 VYGICKCSRCGHKRMSFI---------PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 154 ~t~~~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~~ 188 (198)
....|+|+.|+..-..-. ....-+.|..||..+..
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 356799999997633322 22234789999987643
No 83
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=35.18 E-value=17 Score=35.41 Aligned_cols=15 Identities=27% Similarity=0.842 Sum_probs=0.0
Q ss_pred ceEEEec--cCCCcccc
Q 036389 174 RRHITCL--NCYQYWAS 188 (198)
Q Consensus 174 t~fv~C~--~Cg~~W~~ 188 (198)
...+.|. +||+.|+.
T Consensus 864 ~~~~~c~~~~c~~~~g~ 880 (936)
T 4a2w_A 864 KSKMYCRNNNCQHDWGI 880 (936)
T ss_dssp -----------------
T ss_pred CceEEeCccccChHhhh
Confidence 3557799 99999975
No 84
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.20 E-value=12 Score=27.21 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=20.6
Q ss_pred cccceEcCCCCCCCceEeccceEE-EeccCCCc
Q 036389 154 VYGICKCSRCGHKRMSFIPLRRHI-TCLNCYQY 185 (198)
Q Consensus 154 ~t~~~~C~~C~~~~~~~~pmt~fv-~C~~Cg~~ 185 (198)
....++|..||.. |.+...+. .|..||+.
T Consensus 70 ~p~~~~C~~CG~~---~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 70 EKVELECKDCSHV---FKPNALDYGVCEKCHSK 99 (119)
T ss_dssp ECCEEECSSSSCE---ECSCCSTTCCCSSSSSC
T ss_pred ccceEEcCCCCCE---EeCCCCCCCcCccccCC
Confidence 4567899999864 33344456 79999986
No 85
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=34.07 E-value=3.9 Score=27.24 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=23.6
Q ss_pred eEcCCCCCCCceEe---ccceEEEeccCCCcccc
Q 036389 158 CKCSRCGHKRMSFI---PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 158 ~~C~~C~~~~~~~~---pmt~fv~C~~Cg~~W~~ 188 (198)
..|-.|+...+..+ |.-. .-|+.||-+|+-
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~ 40 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGD-PVCNACGLYYKL 40 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHH
Confidence 47999999988666 5544 679999988864
No 86
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=33.85 E-value=12 Score=22.31 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=16.2
Q ss_pred eEcCCCCCCCceEe---------ccceEEEeccCCCccc
Q 036389 158 CKCSRCGHKRMSFI---------PLRRHITCLNCYQYWA 187 (198)
Q Consensus 158 ~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~ 187 (198)
|.|+.|+..-..-. .-..-+.|..||..+.
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEES
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 67777776432222 1123366777877643
No 87
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=33.10 E-value=16 Score=27.57 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=7.5
Q ss_pred cccceEcCCCCC
Q 036389 154 VYGICKCSRCGH 165 (198)
Q Consensus 154 ~t~~~~C~~C~~ 165 (198)
....+.|..||.
T Consensus 67 ~p~~~~C~~CG~ 78 (139)
T 3a43_A 67 EEAVFKCRNCNY 78 (139)
T ss_dssp ECCEEEETTTCC
T ss_pred cCCcEECCCCCC
Confidence 345677777764
No 88
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=32.50 E-value=15 Score=25.12 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=20.7
Q ss_pred ccceEcCCCCCCCceEeccceEEEeccCCCcc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCLNCYQYW 186 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg~~W 186 (198)
...+.|+.||..+.. ...+-.-.|..||..|
T Consensus 24 ~~ky~C~fCgk~~vk-R~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 24 HARYDCSFCGKKTVK-RGAAGIWTCSCCKKTV 54 (72)
T ss_dssp HSCBCCSSCCSSCBS-BCSSSCBCCSSSCCCC
T ss_pred ccCccCCCCCCceeE-ecCCCeEECCCCCCEE
Confidence 345788888876422 2556667788888764
No 89
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=31.93 E-value=14 Score=21.75 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=18.4
Q ss_pred ceEcCCCCCCCceEe---------ccceEEEeccCCCccc
Q 036389 157 ICKCSRCGHKRMSFI---------PLRRHITCLNCYQYWA 187 (198)
Q Consensus 157 ~~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~ 187 (198)
.|+|+.|+..-.... .-..-+.|..||..+.
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhC
Confidence 478888886533322 1123377999987653
No 90
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.44 E-value=38 Score=23.72 Aligned_cols=29 Identities=31% Similarity=0.626 Sum_probs=20.9
Q ss_pred ceEcCCCCCCCceEe---ccceEEEeccCCCc
Q 036389 157 ICKCSRCGHKRMSFI---PLRRHITCLNCYQY 185 (198)
Q Consensus 157 ~~~C~~C~~~~~~~~---pmt~fv~C~~Cg~~ 185 (198)
.-+|+.|++...... ||....+|..|+-+
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~ 76 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGR 76 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSS
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCc
Confidence 468888888865443 67777888888754
No 91
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=31.15 E-value=38 Score=21.57 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=23.7
Q ss_pred ccceEcCCCCCCCceEeccceEEEec--cCCCccccccc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCL--NCYQYWASTNP 191 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~--~Cg~~W~~~~~ 191 (198)
-+...||.|++. -.|.. ....|. .||..|-.-+.
T Consensus 8 L~iL~CP~c~~~-L~~~~--~~L~C~~~~c~~~YPI~dG 43 (56)
T 2kpi_A 8 LEILACPACHAP-LEERD--AELICTGQDCGLAYPVRDG 43 (56)
T ss_dssp TTSCCCSSSCSC-EEEET--TEEEECSSSCCCEEEEETT
T ss_pred HhheeCCCCCCc-ceecC--CEEEcCCcCCCcEEeeECC
Confidence 356799999995 22333 667799 89987766543
No 92
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=29.95 E-value=14 Score=23.46 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=19.6
Q ss_pred ceEcCCCCCCCceEe---------ccceEEEeccCCCcccc
Q 036389 157 ICKCSRCGHKRMSFI---------PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 157 ~~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~~ 188 (198)
-|+|..||..=.... .-..-+.|..||..+..
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 388888886522222 22334779999987643
No 93
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.91 E-value=16 Score=22.94 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=21.1
Q ss_pred ccceEcCCCCCCCceEe---------ccceEEEeccCCCccc
Q 036389 155 YGICKCSRCGHKRMSFI---------PLRRHITCLNCYQYWA 187 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~ 187 (198)
...|+|+.|+..-.... ....-+.|..|+..+.
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred CCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccC
Confidence 45699999986422211 2234478999998754
No 94
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=29.55 E-value=17 Score=22.46 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.0
Q ss_pred cceEcCCCCCCCceEe
Q 036389 156 GICKCSRCGHKRMSFI 171 (198)
Q Consensus 156 ~~~~C~~C~~~~~~~~ 171 (198)
+.+.||.||..+..|.
T Consensus 29 ~dw~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 29 DDWCCPVCGVSKDQFS 44 (46)
T ss_dssp TTCBCTTTCCBGGGEE
T ss_pred CCCcCcCCCCcHHHcE
Confidence 3479999999988774
No 95
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=28.51 E-value=27 Score=29.03 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=21.5
Q ss_pred cccceEcCCCCCCCceEecc-----ceEEEeccCCCc-cccc
Q 036389 154 VYGICKCSRCGHKRMSFIPL-----RRHITCLNCYQY-WAST 189 (198)
Q Consensus 154 ~t~~~~C~~C~~~~~~~~pm-----t~fv~C~~Cg~~-W~~~ 189 (198)
....|.|.+||.. .|.+. +.--.|.+|+.+ |..-
T Consensus 131 ~~~~f~C~~C~~~--~~v~~~~~~~~~P~~Cp~C~~~~f~l~ 170 (279)
T 1ltl_A 131 VKAVFECRGCMRH--HAVTQSTNMITEPSLCSECGGRSFRLL 170 (279)
T ss_dssp EEEEEEETTTCCE--EEEECSSSSCCCCSCCTTTCCCCEEEC
T ss_pred EEEEEEcCCCCCE--EEEEecCCcccCCCcCCCCCCCCcEEe
Confidence 4567999999964 23321 111369999987 5543
No 96
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.41 E-value=19 Score=22.22 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=21.5
Q ss_pred ccceEcCCCCCCCceEe------ccceEEEeccCCCcccc
Q 036389 155 YGICKCSRCGHKRMSFI------PLRRHITCLNCYQYWAS 188 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~------pmt~fv~C~~Cg~~W~~ 188 (198)
...|+|+.||..=.... .-..-+.|..||.....
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCcccc
Confidence 34699999986311111 22345789999987643
No 97
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=27.61 E-value=37 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=17.7
Q ss_pred EcCCCCCCCceEe--------ccceEEEeccCC
Q 036389 159 KCSRCGHKRMSFI--------PLRRHITCLNCY 183 (198)
Q Consensus 159 ~C~~C~~~~~~~~--------pmt~fv~C~~Cg 183 (198)
.|+.||..-..|+ +....+.|..||
T Consensus 73 ~C~~Cg~~f~~Y~C~~C~l~d~~k~~yHC~~Cg 105 (143)
T 2dkt_A 73 TCEDCSTLFGEYYCSICHLFDKDKRQYHCESCG 105 (143)
T ss_dssp BCSSSCCBSCSEECSSSCCEECSSSEEEETTTT
T ss_pred cCCCCCccceeeEeceeecccCCCceecCCCCC
Confidence 7888888877777 555566666665
No 98
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.64 E-value=18 Score=22.46 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=20.5
Q ss_pred ccceEcCCCCCCCceEe---------ccceEEEeccCCCccc
Q 036389 155 YGICKCSRCGHKRMSFI---------PLRRHITCLNCYQYWA 187 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~ 187 (198)
...|+|..|+..-.... .-..-+.|..||..+.
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEES
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccC
Confidence 45689999987522211 1223378999998754
No 99
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=26.44 E-value=36 Score=29.81 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=23.7
Q ss_pred ceEcCCCCCCCceEe--ccceEEEeccCCC
Q 036389 157 ICKCSRCGHKRMSFI--PLRRHITCLNCYQ 184 (198)
Q Consensus 157 ~~~C~~C~~~~~~~~--pmt~fv~C~~Cg~ 184 (198)
...||-|+.+.-+|. |-+.++.|-.||.
T Consensus 34 ~~~CPfh~ektpSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 34 RTNCPFHPDDTPSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp EECCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred EeeCcCCCCCCCeEEEECCCCEEEECCCCC
Confidence 457999998877776 9999999999995
No 100
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.21 E-value=23 Score=17.15 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=6.6
Q ss_pred EEeccCCCccc
Q 036389 177 ITCLNCYQYWA 187 (198)
Q Consensus 177 v~C~~Cg~~W~ 187 (198)
+.|..||..+.
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 45667776543
No 101
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=26.10 E-value=33 Score=22.41 Aligned_cols=29 Identities=21% Similarity=0.516 Sum_probs=19.2
Q ss_pred ccceEcCCCCCCCceEeccceEEEec-cCCCccc
Q 036389 155 YGICKCSRCGHKRMSFIPLRRHITCL-NCYQYWA 187 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~pmt~fv~C~-~Cg~~W~ 187 (198)
.....|+.|++. |.|-...+.|. .|. +|.
T Consensus 6 ~~~~~C~~C~~p---~~~~~~mI~CD~~C~-~Wf 35 (65)
T 2vpb_A 6 DPVYPCGICTNE---VNDDQDAILCEASCQ-KWF 35 (65)
T ss_dssp ---CBCTTTCSB---CCTTSCEEEBTTTTC-CEE
T ss_pred CCcCcCccCCCc---cCCCCCeEecccCcc-ccC
Confidence 345688999886 33556778888 886 774
No 102
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=25.66 E-value=1.7e+02 Score=22.60 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=11.0
Q ss_pred cccceEcCCCCCC
Q 036389 154 VYGICKCSRCGHK 166 (198)
Q Consensus 154 ~t~~~~C~~C~~~ 166 (198)
..+.|.|..||..
T Consensus 47 ~~G~Y~C~~Cg~p 59 (154)
T 3hcj_A 47 LDGVYTCRLCGLP 59 (154)
T ss_dssp SSEEEEETTTCCE
T ss_pred CCEEEEccCCCCc
Confidence 5789999999974
No 103
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.44 E-value=25 Score=16.98 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=6.5
Q ss_pred EEeccCCCccc
Q 036389 177 ITCLNCYQYWA 187 (198)
Q Consensus 177 v~C~~Cg~~W~ 187 (198)
+.|..||..+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 45666766543
No 104
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=25.37 E-value=19 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.661 Sum_probs=16.6
Q ss_pred cccceEcCCCCCCCceEeccceEEEeccCC
Q 036389 154 VYGICKCSRCGHKRMSFIPLRRHITCLNCY 183 (198)
Q Consensus 154 ~t~~~~C~~C~~~~~~~~pmt~fv~C~~Cg 183 (198)
..+...|+.||+.+- | +..|.+||
T Consensus 27 ~p~l~~c~~cGe~~~---~---H~vc~~CG 50 (60)
T 3v2d_5 27 PPTLVPCPECKAMKP---P---HTVCPECG 50 (60)
T ss_dssp CCCCEECTTTCCEEC---T---TSCCTTTC
T ss_pred CCceeECCCCCCeec---c---eEEcCCCC
Confidence 356889999998432 3 33488888
No 105
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=24.53 E-value=26 Score=24.63 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=10.0
Q ss_pred cccceEcCCCCCC
Q 036389 154 VYGICKCSRCGHK 166 (198)
Q Consensus 154 ~t~~~~C~~C~~~ 166 (198)
..=.|+||.||..
T Consensus 48 e~F~FkCP~CgEE 60 (95)
T 2k5c_A 48 EEFVFKCPVCGEE 60 (95)
T ss_dssp HHSEEECTTTCCE
T ss_pred HHHhhcCCCccHH
Confidence 3456999999974
No 106
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=24.16 E-value=23 Score=24.98 Aligned_cols=13 Identities=38% Similarity=0.869 Sum_probs=8.5
Q ss_pred eEEEeccCCCccc
Q 036389 175 RHITCLNCYQYWA 187 (198)
Q Consensus 175 ~fv~C~~Cg~~W~ 187 (198)
.+++|+.||...+
T Consensus 20 d~iiClecGK~fK 32 (87)
T 2jsp_A 20 DHIVCLECGGSFK 32 (87)
T ss_dssp SCEECTBTCCEES
T ss_pred CceEecccchhhH
Confidence 4567777777655
No 107
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=23.77 E-value=43 Score=23.94 Aligned_cols=17 Identities=6% Similarity=0.051 Sum_probs=12.7
Q ss_pred ceEEEeccCCCcccccc
Q 036389 174 RRHITCLNCYQYWASTN 190 (198)
Q Consensus 174 t~fv~C~~Cg~~W~~~~ 190 (198)
.....|..||..|-..+
T Consensus 51 ~~~LvC~~c~~~YPI~d 67 (97)
T 2k5r_A 51 HEALITRDRKQVFRIED 67 (97)
T ss_dssp SEEEECTTSCEEEEEET
T ss_pred CCeEEcCCCCCCccccC
Confidence 56788999988776554
No 108
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.15 E-value=27 Score=17.05 Aligned_cols=11 Identities=18% Similarity=0.307 Sum_probs=6.6
Q ss_pred EEeccCCCccc
Q 036389 177 ITCLNCYQYWA 187 (198)
Q Consensus 177 v~C~~Cg~~W~ 187 (198)
+.|..||..+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 45777776543
No 109
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=23.05 E-value=45 Score=25.27 Aligned_cols=26 Identities=19% Similarity=0.700 Sum_probs=21.1
Q ss_pred eEcCCCCCCCceEe--ccceEEEeccCCC
Q 036389 158 CKCSRCGHKRMSFI--PLRRHITCLNCYQ 184 (198)
Q Consensus 158 ~~C~~C~~~~~~~~--pmt~fv~C~~Cg~ 184 (198)
-.|..||.....|- ..-+|+ |..|..
T Consensus 26 ~~CaDCg~~~P~WaS~n~Gvfi-C~~Csg 53 (140)
T 2olm_A 26 RKCFDCDQRGPTYVNMTVGSFV-CTSCSG 53 (140)
T ss_dssp GSCTTTCSSCCCEEETTTTEEE-CHHHHH
T ss_pred CcCCCCCCCCCCceeeccCEEE-chhccc
Confidence 48999999999998 555776 998863
No 110
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=22.90 E-value=47 Score=29.61 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=20.6
Q ss_pred cceEcCCCCCCCceEe-----cc-----ceEEEeccCCCcc
Q 036389 156 GICKCSRCGHKRMSFI-----PL-----RRHITCLNCYQYW 186 (198)
Q Consensus 156 ~~~~C~~C~~~~~~~~-----pm-----t~fv~C~~Cg~~W 186 (198)
-...|+.|++.-.+-+ |. -.-..|.+||.+.
T Consensus 219 ~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ 259 (404)
T 2qkd_A 219 FNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRT 259 (404)
T ss_dssp EEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEE
T ss_pred ecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcc
Confidence 3457999998755433 53 2334599999875
No 111
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=22.48 E-value=23 Score=22.22 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=19.6
Q ss_pred cceEcCCCCCCCceEe---------ccceEEEeccCCCccc
Q 036389 156 GICKCSRCGHKRMSFI---------PLRRHITCLNCYQYWA 187 (198)
Q Consensus 156 ~~~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~ 187 (198)
..|.|+.|+..-.... .-..-+.|..||..+.
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFS 68 (82)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEES
T ss_pred CCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhC
Confidence 4589999986422211 2223477999997654
No 112
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.38 E-value=25 Score=22.16 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=21.4
Q ss_pred ccceEcCCCCCCCceEe---------ccceEEEeccCCCccc
Q 036389 155 YGICKCSRCGHKRMSFI---------PLRRHITCLNCYQYWA 187 (198)
Q Consensus 155 t~~~~C~~C~~~~~~~~---------pmt~fv~C~~Cg~~W~ 187 (198)
...|+|+.|+..-.... .-..-+.|..||..+.
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEES
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccC
Confidence 45689999987533222 2223478999998754
No 113
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=22.36 E-value=31 Score=22.06 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=13.9
Q ss_pred cceEcCCCCCCCceEec
Q 036389 156 GICKCSRCGHKRMSFIP 172 (198)
Q Consensus 156 ~~~~C~~C~~~~~~~~p 172 (198)
+.+.||.||..|..|.+
T Consensus 35 ~dw~CP~Cg~~K~~F~~ 51 (54)
T 4rxn_A 35 DDWVCPLCGVGKDEFEE 51 (54)
T ss_dssp TTCBCTTTCCBGGGEEE
T ss_pred CCCcCcCCCCcHHHceE
Confidence 45799999999987753
No 114
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=22.19 E-value=43 Score=25.09 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=11.3
Q ss_pred ccceEEEeccCCCc
Q 036389 172 PLRRHITCLNCYQY 185 (198)
Q Consensus 172 pmt~fv~C~~Cg~~ 185 (198)
.|++-|.|.+||.-
T Consensus 64 ~~r~Ev~C~~Cg~H 77 (124)
T 2kv1_A 64 PEALKVSCGKCGNG 77 (124)
T ss_dssp TTCEEEECTTTTCC
T ss_pred ceEEEEEEecCCCc
Confidence 56788999999853
No 115
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=21.87 E-value=31 Score=26.42 Aligned_cols=26 Identities=27% Similarity=0.686 Sum_probs=21.0
Q ss_pred eEcCCCCCCCceEe--ccceEEEeccCCC
Q 036389 158 CKCSRCGHKRMSFI--PLRRHITCLNCYQ 184 (198)
Q Consensus 158 ~~C~~C~~~~~~~~--pmt~fv~C~~Cg~ 184 (198)
-.|..||.....|. ..-+|+ |..|..
T Consensus 38 ~~CaDCga~~P~WaS~n~Gvfi-C~~Csg 65 (144)
T 2p57_A 38 KACFDCGAKNPSWASITYGVFL-CIDCSG 65 (144)
T ss_dssp GBCTTTCCBSCCEEEGGGTEEE-CHHHHH
T ss_pred CcCCCCcCCCCCeEEeccCEEE-hhhchH
Confidence 48999999999988 555776 998864
No 116
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.54 E-value=28 Score=26.80 Aligned_cols=25 Identities=28% Similarity=0.709 Sum_probs=20.2
Q ss_pred eEcCCCCCCCceEe--ccceEEEeccCC
Q 036389 158 CKCSRCGHKRMSFI--PLRRHITCLNCY 183 (198)
Q Consensus 158 ~~C~~C~~~~~~~~--pmt~fv~C~~Cg 183 (198)
-.|..||.....|- ..-+|+ |..|.
T Consensus 30 ~~CaDCga~~P~WaS~n~Gvfi-C~~Cs 56 (149)
T 2crw_A 30 KVCFDCGAKNPSWASITYGVFL-CIDCS 56 (149)
T ss_dssp SBCSSSCCBSCCCEETTTTEEC-CHHHH
T ss_pred CcCCCCcCCCCCcEEeccCEEE-chhcc
Confidence 48999999998888 555676 98886
No 117
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.48 E-value=35 Score=22.14 Aligned_cols=12 Identities=17% Similarity=0.548 Sum_probs=7.7
Q ss_pred eEEEeccCCCcc
Q 036389 175 RHITCLNCYQYW 186 (198)
Q Consensus 175 ~fv~C~~Cg~~W 186 (198)
.-+.|..||..+
T Consensus 64 ~~~~C~~C~~~f 75 (95)
T 2yt9_A 64 KPYICQSCGKGF 75 (95)
T ss_dssp SSBCCSSSCCCB
T ss_pred CceECCCccchh
Confidence 446677777654
No 118
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=20.99 E-value=44 Score=28.01 Aligned_cols=24 Identities=29% Similarity=0.724 Sum_probs=19.8
Q ss_pred EcCCCCCCCceEe--ccceEEEeccCC
Q 036389 159 KCSRCGHKRMSFI--PLRRHITCLNCY 183 (198)
Q Consensus 159 ~C~~C~~~~~~~~--pmt~fv~C~~Cg 183 (198)
.|..||.....|. ..-+|+ |..|.
T Consensus 39 ~c~dc~~~~~~~~~~~~~~~~-c~~c~ 64 (329)
T 3o47_A 39 VCFECGAFNPQWVSVTYGIWI-CLECS 64 (329)
T ss_dssp BCTTTCCBSCCEEEGGGTEEE-CHHHH
T ss_pred cCCCCCCCCCCeEEecCCEEE-Chhhh
Confidence 7999999999998 555665 99886
No 119
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=20.75 E-value=29 Score=25.74 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHhcCCCCCHHHHHHhhcCCCCchhc
Q 036389 57 PIQVAISMESAMYEKWGR----SSETYKFKYRRLLFNFNDPKNHEFRKKVLLGDVKPETI 112 (198)
Q Consensus 57 ~~~~A~~IE~alf~~~~~----~~~~Yk~k~Rsl~~NLkd~kNp~Lr~~vl~G~isp~~l 112 (198)
+..++..+++.|++.|.+ .....-+.+|.|..|= ...|.|.+.-..-.|+.++|
T Consensus 28 v~~F~~~L~~~L~~~y~~HW~P~~P~kGsayRcIrin~--~~Dp~l~~Aa~~sgl~~~~l 85 (120)
T 3e9v_A 28 LKVFSGALQEALTEHYKHHWFPEKPSKGSGYRCIRINH--KMDPIISRVASQIGLSQPQL 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTSTTTTHHHHCEECSS--SCCHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCceeEEEECC--CCCHHHHHHHHHhCCCHHHH
Confidence 578999999999999864 2344556777887773 46778877666665655555
No 120
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=20.48 E-value=32 Score=21.63 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=13.4
Q ss_pred cceEcCCCCCCCceEe
Q 036389 156 GICKCSRCGHKRMSFI 171 (198)
Q Consensus 156 ~~~~C~~C~~~~~~~~ 171 (198)
+.+.||.||..|..|.
T Consensus 34 ~dw~CP~Cg~~K~~F~ 49 (52)
T 1yk4_A 34 DDWVCPLCGAPKSEFE 49 (52)
T ss_dssp TTCBCTTTCCBGGGEE
T ss_pred CCCcCCCCCCCHHHcE
Confidence 4579999999998775
No 121
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.41 E-value=32 Score=21.92 Aligned_cols=17 Identities=24% Similarity=0.553 Sum_probs=14.0
Q ss_pred cceEcCCCCCCCceEec
Q 036389 156 GICKCSRCGHKRMSFIP 172 (198)
Q Consensus 156 ~~~~C~~C~~~~~~~~p 172 (198)
+.+.||.||..|..|.+
T Consensus 35 ~dw~CP~Cga~K~~F~~ 51 (55)
T 2v3b_B 35 ADWVCPDCGVGKIDFEM 51 (55)
T ss_dssp TTCCCTTTCCCGGGEEE
T ss_pred CCCcCCCCCCCHHHcee
Confidence 45799999999988864
No 122
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=20.30 E-value=63 Score=28.13 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=24.4
Q ss_pred ccceEcCCCCCCC--ceE----e-cc----------ceEEEeccCCCcccccc
Q 036389 155 YGICKCSRCGHKR--MSF----I-PL----------RRHITCLNCYQYWASTN 190 (198)
Q Consensus 155 t~~~~C~~C~~~~--~~~----~-pm----------t~fv~C~~Cg~~W~~~~ 190 (198)
.+.-.|..||+.. +.+ . |. .--+.|..||+.=+|-|
T Consensus 117 vn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rFPR 169 (335)
T 1x3z_A 117 CNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPR 169 (335)
T ss_dssp CSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEE
T ss_pred eCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccccCC
Confidence 4567899999875 333 3 33 33477999999766643
Done!