Query 036391
Match_columns 389
No_of_seqs 185 out of 1752
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:13:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 6.6E-36 1.4E-40 263.9 25.6 224 90-332 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 7.4E-16 1.6E-20 128.2 18.1 149 203-355 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 1.6E-15 3.4E-20 121.0 13.1 112 203-317 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.5 9.1E-12 2E-16 114.3 25.6 319 2-357 4-373 (373)
5 PHA02713 hypothetical protein; 99.4 8.6E-11 1.9E-15 116.4 21.5 196 104-337 320-540 (557)
6 KOG4441 Proteins containing BT 99.3 3.4E-10 7.3E-15 112.0 19.0 209 89-337 327-553 (571)
7 PHA02713 hypothetical protein; 99.3 1.1E-09 2.5E-14 108.5 22.3 194 105-337 273-496 (557)
8 KOG4441 Proteins containing BT 99.2 9.6E-10 2.1E-14 108.8 18.8 197 104-338 301-507 (571)
9 PHA03098 kelch-like protein; P 99.2 4.5E-09 9.8E-14 104.6 22.9 193 105-337 312-518 (534)
10 PHA02790 Kelch-like protein; P 99.2 4E-09 8.7E-14 103.0 20.6 185 104-337 287-477 (480)
11 PLN02153 epithiospecifier prot 99.1 4.9E-08 1.1E-12 91.4 25.0 209 104-338 50-292 (341)
12 PLN02193 nitrile-specifier pro 99.0 1.1E-07 2.5E-12 92.7 23.2 209 105-339 194-419 (470)
13 TIGR03548 mutarot_permut cycli 99.0 1E-07 2.2E-12 88.6 21.7 155 105-291 40-204 (323)
14 PF12937 F-box-like: F-box-lik 99.0 3.5E-10 7.6E-15 72.7 2.9 42 2-43 1-42 (47)
15 TIGR03547 muta_rot_YjhT mutatr 99.0 3.1E-07 6.7E-12 86.3 23.9 176 92-293 15-239 (346)
16 PF00646 F-box: F-box domain; 98.9 1.1E-09 2.5E-14 70.8 2.2 45 2-46 3-47 (48)
17 PLN02153 epithiospecifier prot 98.9 9.5E-07 2.1E-11 82.7 22.6 166 104-291 101-294 (341)
18 PHA03098 kelch-like protein; P 98.8 1.9E-07 4.1E-12 93.0 17.8 192 106-338 266-472 (534)
19 PRK14131 N-acetylneuraminic ac 98.8 3.3E-06 7.1E-11 80.2 23.1 177 91-293 35-260 (376)
20 PHA02790 Kelch-like protein; P 98.7 6.7E-07 1.4E-11 87.5 17.7 166 162-361 285-454 (480)
21 smart00256 FBOX A Receptor for 98.7 6.9E-09 1.5E-13 64.6 2.3 39 5-43 1-39 (41)
22 PLN02193 nitrile-specifier pro 98.7 1.1E-05 2.5E-10 78.7 24.2 162 104-292 244-421 (470)
23 TIGR03548 mutarot_permut cycli 98.3 6.1E-05 1.3E-09 70.0 18.0 138 175-338 52-202 (323)
24 PRK14131 N-acetylneuraminic ac 98.3 0.00025 5.4E-09 67.3 22.0 154 104-278 189-367 (376)
25 TIGR03547 muta_rot_YjhT mutatr 98.3 0.00027 5.8E-09 66.4 21.9 142 104-267 168-331 (346)
26 KOG1230 Protein containing rep 98.1 0.00012 2.6E-09 67.0 15.4 212 103-339 97-349 (521)
27 KOG4693 Uncharacterized conser 98.1 0.00012 2.7E-09 63.1 14.4 213 103-344 43-288 (392)
28 KOG0281 Beta-TrCP (transducin 97.8 0.00071 1.5E-08 60.5 14.1 42 2-43 75-120 (499)
29 KOG4693 Uncharacterized conser 97.4 0.0049 1.1E-07 53.5 13.3 159 104-290 105-285 (392)
30 KOG2120 SCF ubiquitin ligase, 97.4 7.8E-05 1.7E-09 65.8 1.5 40 2-41 98-137 (419)
31 KOG0379 Kelch repeat-containin 97.1 0.088 1.9E-06 51.7 19.9 207 105-339 89-310 (482)
32 KOG0379 Kelch repeat-containin 96.8 0.077 1.7E-06 52.1 16.9 175 94-292 123-312 (482)
33 KOG2997 F-box protein FBX9 [Ge 96.7 0.0009 2E-08 59.4 2.2 46 2-47 107-157 (366)
34 KOG1230 Protein containing rep 96.6 0.1 2.2E-06 48.5 14.6 157 165-339 99-287 (521)
35 PF13964 Kelch_6: Kelch motif 96.5 0.0076 1.7E-07 38.8 5.3 40 200-239 4-47 (50)
36 PF01344 Kelch_1: Kelch motif; 95.2 0.038 8.2E-07 34.8 4.2 40 200-239 4-47 (47)
37 PF07250 Glyoxal_oxid_N: Glyox 94.9 1.2 2.5E-05 39.3 13.7 171 163-357 45-222 (243)
38 KOG0274 Cdc4 and related F-box 94.2 6.7 0.00014 39.1 21.3 42 2-43 108-149 (537)
39 PF07646 Kelch_2: Kelch motif; 93.9 0.21 4.6E-06 31.8 5.3 39 200-238 4-47 (49)
40 PF13360 PQQ_2: PQQ-like domai 93.2 5.3 0.00011 34.7 19.8 194 93-336 35-236 (238)
41 PF08450 SGL: SMP-30/Gluconola 93.2 5.6 0.00012 35.0 21.2 200 94-339 11-222 (246)
42 smart00612 Kelch Kelch domain. 93.0 0.33 7.2E-06 30.1 5.2 22 162-183 13-34 (47)
43 PF07893 DUF1668: Protein of u 93.0 6.4 0.00014 36.9 15.7 158 87-266 69-252 (342)
44 PF01344 Kelch_1: Kelch motif; 92.7 0.39 8.4E-06 30.1 5.1 35 147-183 13-47 (47)
45 PF13418 Kelch_4: Galactose ox 92.0 0.3 6.5E-06 31.0 3.9 37 200-236 4-44 (49)
46 PF07893 DUF1668: Protein of u 91.6 5.7 0.00012 37.2 13.6 110 221-337 86-214 (342)
47 smart00284 OLF Olfactomedin-li 91.0 7 0.00015 34.7 12.6 127 199-339 75-217 (255)
48 PF13964 Kelch_6: Kelch motif 90.6 0.39 8.4E-06 30.6 3.4 22 162-183 26-47 (50)
49 PF07762 DUF1618: Protein of u 90.4 2.6 5.6E-05 33.2 8.7 77 221-297 6-102 (131)
50 PF13360 PQQ_2: PQQ-like domai 89.1 14 0.00031 32.0 17.4 140 165-337 4-147 (238)
51 PRK11138 outer membrane biogen 88.1 25 0.00054 33.5 19.5 193 93-336 119-318 (394)
52 PF07646 Kelch_2: Kelch motif; 87.5 1.1 2.5E-05 28.3 3.9 38 146-183 12-49 (49)
53 KOG2055 WD40 repeat protein [G 86.2 32 0.0007 32.9 17.4 110 219-344 278-387 (514)
54 PLN02772 guanylate kinase 86.2 5.6 0.00012 37.7 9.2 75 199-278 26-107 (398)
55 COG4257 Vgb Streptogramin lyas 85.8 9.5 0.00021 34.0 9.7 123 89-242 194-318 (353)
56 TIGR01640 F_box_assoc_1 F-box 85.7 20 0.00044 31.1 12.3 120 205-339 3-136 (230)
57 smart00612 Kelch Kelch domain. 84.9 2.5 5.5E-05 25.9 4.6 21 221-241 15-36 (47)
58 COG3055 Uncharacterized protei 84.8 33 0.00072 31.8 15.0 134 162-318 194-356 (381)
59 TIGR03866 PQQ_ABC_repeats PQQ- 84.6 29 0.00062 30.9 14.5 119 207-339 167-289 (300)
60 COG3055 Uncharacterized protei 84.4 9.2 0.0002 35.3 9.3 114 163-293 112-267 (381)
61 TIGR03300 assembly_YfgL outer 84.3 37 0.00081 32.0 19.1 100 94-235 65-171 (377)
62 PF02191 OLF: Olfactomedin-lik 83.5 32 0.00069 30.6 17.2 128 199-340 70-213 (250)
63 PF13418 Kelch_4: Galactose ox 83.4 2.1 4.5E-05 27.0 3.7 22 162-183 27-48 (49)
64 KOG4341 F-box protein containi 83.4 0.62 1.3E-05 43.8 1.5 38 3-40 73-110 (483)
65 PRK11138 outer membrane biogen 83.3 43 0.00092 31.9 19.5 142 165-336 131-280 (394)
66 KOG0289 mRNA splicing factor [ 83.1 6.1 0.00013 37.2 7.7 72 257-339 357-429 (506)
67 PF10282 Lactonase: Lactonase, 83.0 41 0.00088 31.4 17.5 123 207-339 154-286 (345)
68 PF13415 Kelch_3: Galactose ox 82.7 3.2 6.9E-05 26.2 4.3 23 161-183 16-38 (49)
69 KOG4152 Host cell transcriptio 82.2 40 0.00086 32.9 12.8 165 104-290 57-247 (830)
70 TIGR03300 assembly_YfgL outer 80.6 51 0.0011 31.0 20.0 192 93-335 104-302 (377)
71 PRK11028 6-phosphogluconolacto 80.2 49 0.0011 30.5 15.0 138 164-331 12-157 (330)
72 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.2 51 0.0011 32.9 13.5 123 201-337 63-196 (527)
73 KOG0296 Angio-associated migra 77.8 47 0.001 30.8 11.4 115 218-335 83-225 (399)
74 KOG1310 WD40 repeat protein [G 76.0 46 0.001 32.7 11.3 118 92-230 59-179 (758)
75 PRK04792 tolB translocation pr 75.5 83 0.0018 30.7 19.5 188 103-337 241-432 (448)
76 COG4946 Uncharacterized protei 75.3 83 0.0018 30.5 14.0 149 165-337 288-438 (668)
77 KOG0647 mRNA export protein (c 74.5 21 0.00045 32.2 8.1 63 268-339 49-111 (347)
78 PF05096 Glu_cyclase_2: Glutam 73.3 69 0.0015 28.7 15.6 117 206-344 54-172 (264)
79 smart00564 PQQ beta-propeller 73.3 9.4 0.0002 21.4 4.1 25 312-336 6-30 (33)
80 KOG0291 WD40-repeat-containing 72.9 92 0.002 32.0 12.8 120 201-332 249-382 (893)
81 PRK11028 6-phosphogluconolacto 72.4 80 0.0017 29.0 15.0 120 206-337 184-313 (330)
82 TIGR03866 PQQ_ABC_repeats PQQ- 72.2 70 0.0015 28.3 22.5 188 102-336 51-243 (300)
83 PF12458 DUF3686: ATPase invol 71.9 27 0.00058 33.2 8.5 138 91-277 235-384 (448)
84 PF01011 PQQ: PQQ enzyme repea 70.8 9.6 0.00021 22.5 3.8 24 314-337 2-25 (38)
85 KOG0294 WD40 repeat-containing 70.4 87 0.0019 28.6 12.6 113 200-334 45-161 (362)
86 PF02897 Peptidase_S9_N: Proly 68.7 1.1E+02 0.0024 29.2 21.9 120 205-338 285-412 (414)
87 PF13415 Kelch_3: Galactose ox 68.5 8.6 0.00019 24.1 3.4 21 104-124 19-39 (49)
88 PF06433 Me-amine-dh_H: Methyl 68.5 1E+02 0.0022 28.7 13.0 120 202-336 188-326 (342)
89 PF03088 Str_synth: Strictosid 68.0 14 0.00029 27.0 4.7 16 322-337 37-52 (89)
90 TIGR03074 PQQ_membr_DH membran 67.7 1.7E+02 0.0036 30.9 14.6 33 199-235 186-220 (764)
91 PF10282 Lactonase: Lactonase, 66.0 1.1E+02 0.0025 28.4 22.2 120 207-338 202-332 (345)
92 cd01207 Ena-Vasp Enabled-VASP- 63.0 33 0.00071 26.2 6.1 43 104-152 9-51 (111)
93 PLN00181 protein SPA1-RELATED; 62.3 2.1E+02 0.0046 30.2 24.1 191 96-333 547-741 (793)
94 PRK05137 tolB translocation pr 62.0 1.6E+02 0.0034 28.5 20.7 187 103-337 225-419 (435)
95 cd01206 Homer Homer type EVH1 62.0 20 0.00044 27.0 4.7 41 103-152 10-51 (111)
96 PF13570 PQQ_3: PQQ-like domai 61.9 26 0.00057 20.7 4.5 26 201-230 15-40 (40)
97 COG4946 Uncharacterized protei 61.7 1.6E+02 0.0035 28.6 20.6 50 219-278 380-430 (668)
98 KOG0316 Conserved WD40 repeat- 61.6 1.1E+02 0.0025 26.8 14.8 112 94-242 28-144 (307)
99 KOG0291 WD40-repeat-containing 60.5 2.1E+02 0.0046 29.6 19.3 114 199-332 436-552 (893)
100 KOG2055 WD40 repeat protein [G 60.0 1.7E+02 0.0037 28.3 13.5 186 90-329 311-511 (514)
101 KOG1274 WD40 repeat protein [G 59.7 2.4E+02 0.0051 29.8 17.6 59 270-331 161-219 (933)
102 PRK04043 tolB translocation pr 58.9 1.8E+02 0.0038 28.1 13.7 103 220-339 212-318 (419)
103 KOG0279 G protein beta subunit 57.1 79 0.0017 28.4 8.2 75 246-334 191-266 (315)
104 PF13013 F-box-like_2: F-box-l 56.4 7.2 0.00016 29.6 1.6 29 2-30 22-50 (109)
105 KOG0310 Conserved WD40 repeat- 56.2 2E+02 0.0043 27.9 15.5 184 110-345 8-198 (487)
106 PRK00178 tolB translocation pr 55.6 2E+02 0.0043 27.7 19.8 187 104-337 223-413 (430)
107 KOG2502 Tub family proteins [G 55.3 8.4 0.00018 35.4 2.1 37 2-38 45-89 (355)
108 KOG2437 Muskelin [Signal trans 55.1 35 0.00077 33.2 6.1 144 106-266 231-394 (723)
109 KOG2321 WD40 repeat protein [G 54.1 1.1E+02 0.0024 30.4 9.3 103 221-336 155-264 (703)
110 PF08450 SGL: SMP-30/Gluconola 53.9 1.5E+02 0.0033 25.8 15.7 110 207-337 11-129 (246)
111 TIGR02800 propeller_TolB tol-p 53.1 2.1E+02 0.0045 27.2 20.0 144 164-337 214-361 (417)
112 KOG0639 Transducin-like enhanc 52.7 1.3E+02 0.0027 29.5 9.3 54 220-278 486-540 (705)
113 COG2706 3-carboxymuconate cycl 51.1 2.1E+02 0.0045 26.6 13.0 121 209-337 53-182 (346)
114 PF15408 PH_7: Pleckstrin homo 51.1 6.9 0.00015 27.9 0.7 24 19-42 76-99 (104)
115 PRK04792 tolB translocation pr 49.6 2.6E+02 0.0056 27.2 17.4 114 207-337 272-389 (448)
116 PF03178 CPSF_A: CPSF A subuni 48.3 2.2E+02 0.0048 26.1 14.5 108 208-337 48-166 (321)
117 COG2706 3-carboxymuconate cycl 47.9 2.4E+02 0.0051 26.3 19.1 159 163-339 166-332 (346)
118 KOG0265 U5 snRNP-specific prot 47.9 2.2E+02 0.0048 26.0 10.4 68 257-335 58-125 (338)
119 TIGR02658 TTQ_MADH_Hv methylam 47.8 2.5E+02 0.0053 26.5 14.0 116 206-337 204-338 (352)
120 KOG0319 WD40-repeat-containing 47.4 3.4E+02 0.0073 28.0 14.7 190 89-331 25-223 (775)
121 KOG0295 WD40 repeat-containing 47.4 60 0.0013 30.2 6.1 66 260-336 305-370 (406)
122 COG1520 FOG: WD40-like repeat 46.1 2.6E+02 0.0056 26.3 14.0 111 203-337 64-178 (370)
123 PLN02919 haloacid dehalogenase 45.1 4.6E+02 0.01 28.9 22.8 230 89-337 574-840 (1057)
124 KOG0321 WD40 repeat-containing 44.9 1E+02 0.0023 30.9 7.7 57 219-279 72-132 (720)
125 KOG1036 Mitotic spindle checkp 44.8 2.5E+02 0.0054 25.7 10.7 94 219-333 73-166 (323)
126 PF03088 Str_synth: Strictosid 44.6 69 0.0015 23.3 5.1 19 218-236 34-52 (89)
127 KOG2437 Muskelin [Signal trans 44.4 45 0.00098 32.5 5.1 132 199-337 262-419 (723)
128 COG4257 Vgb Streptogramin lyas 43.9 2.5E+02 0.0054 25.5 9.3 101 222-337 125-225 (353)
129 KOG3926 F-box proteins [Amino 43.6 26 0.00057 31.1 3.2 41 1-41 201-242 (332)
130 KOG2106 Uncharacterized conser 42.8 3.4E+02 0.0074 26.7 13.3 36 303-339 410-445 (626)
131 KOG0301 Phospholipase A2-activ 42.7 3.9E+02 0.0085 27.4 18.8 88 221-330 200-288 (745)
132 KOG0286 G-protein beta subunit 42.6 2.7E+02 0.0057 25.4 15.7 181 103-333 76-262 (343)
133 KOG0292 Vesicle coat complex C 42.6 1.5E+02 0.0033 31.3 8.6 73 253-334 211-284 (1202)
134 KOG0266 WD40 repeat-containing 42.4 2.1E+02 0.0046 27.9 9.8 70 257-337 214-283 (456)
135 KOG0645 WD40 repeat protein [G 42.1 2.6E+02 0.0056 25.2 11.2 79 258-345 27-105 (312)
136 KOG0299 U3 snoRNP-associated p 41.3 3.4E+02 0.0074 26.3 18.9 62 251-320 384-445 (479)
137 PTZ00420 coronin; Provisional 41.1 2.2E+02 0.0048 28.8 9.7 56 268-335 147-202 (568)
138 cd00216 PQQ_DH Dehydrogenases 41.1 3.6E+02 0.0079 26.6 11.7 32 200-235 54-87 (488)
139 cd00200 WD40 WD40 domain, foun 40.0 2.3E+02 0.0051 24.0 20.1 97 220-335 114-212 (289)
140 KOG0283 WD40 repeat-containing 39.9 61 0.0013 33.2 5.5 56 269-336 432-487 (712)
141 PRK04922 tolB translocation pr 39.1 3.6E+02 0.0079 26.0 19.5 144 164-337 228-375 (433)
142 KOG0300 WD40 repeat-containing 37.8 1.2E+02 0.0026 27.7 6.4 62 265-337 374-435 (481)
143 KOG0319 WD40-repeat-containing 37.5 3.1E+02 0.0066 28.3 9.7 102 221-336 40-141 (775)
144 PF05096 Glu_cyclase_2: Glutam 37.4 3.1E+02 0.0066 24.6 17.0 143 162-337 66-210 (264)
145 PF12768 Rax2: Cortical protei 37.0 1.2E+02 0.0025 27.6 6.4 68 162-238 14-81 (281)
146 TIGR02658 TTQ_MADH_Hv methylam 36.9 3.6E+02 0.0079 25.4 19.5 71 253-336 210-293 (352)
147 PF10902 DUF2693: Protein of u 35.4 37 0.0008 24.4 2.4 18 322-339 49-66 (83)
148 PTZ00421 coronin; Provisional 34.0 3.6E+02 0.0077 26.8 9.8 56 268-334 147-202 (493)
149 PRK05137 tolB translocation pr 33.6 4.4E+02 0.0096 25.3 21.1 188 104-337 182-373 (435)
150 TIGR02800 propeller_TolB tol-p 33.0 4.3E+02 0.0093 25.0 20.7 187 104-337 214-404 (417)
151 PF00400 WD40: WD domain, G-be 32.9 98 0.0021 17.5 6.9 39 285-328 1-39 (39)
152 PTZ00421 coronin; Provisional 32.6 5E+02 0.011 25.7 22.9 113 207-336 179-296 (493)
153 PRK04043 tolB translocation pr 32.3 4.7E+02 0.01 25.2 20.3 186 103-337 212-407 (419)
154 PF14339 DUF4394: Domain of un 32.2 1.3E+02 0.0028 26.5 5.6 55 92-150 36-92 (236)
155 PLN02919 haloacid dehalogenase 31.8 7.4E+02 0.016 27.4 23.0 74 256-334 813-892 (1057)
156 PRK00178 tolB translocation pr 30.4 4.9E+02 0.011 24.9 21.1 143 164-337 223-370 (430)
157 KOG2096 WD40 repeat protein [G 30.0 1.7E+02 0.0037 26.9 6.1 67 257-331 97-164 (420)
158 PF14870 PSII_BNR: Photosynthe 29.8 4.4E+02 0.0096 24.2 16.2 117 203-339 66-183 (302)
159 KOG0639 Transducin-like enhanc 28.5 2.6E+02 0.0057 27.5 7.3 103 220-335 439-544 (705)
160 TIGR03075 PQQ_enz_alc_DH PQQ-d 28.5 3E+02 0.0065 27.5 8.4 25 312-336 120-144 (527)
161 KOG4152 Host cell transcriptio 28.4 6E+02 0.013 25.3 10.8 127 137-278 207-362 (830)
162 KOG4378 Nuclear protein COP1 [ 28.4 1.3E+02 0.0027 29.5 5.3 58 268-335 186-244 (673)
163 PF13854 Kelch_5: Kelch motif 28.3 1.3E+02 0.0028 17.9 3.8 33 198-230 5-41 (42)
164 KOG0289 mRNA splicing factor [ 28.2 5.6E+02 0.012 24.8 12.7 116 204-338 355-470 (506)
165 KOG0647 mRNA export protein (c 28.0 4.8E+02 0.01 24.0 10.9 94 221-335 94-189 (347)
166 KOG3545 Olfactomedin and relat 27.8 4.3E+02 0.0094 23.4 10.3 127 199-339 69-211 (249)
167 KOG0293 WD40 repeat-containing 27.6 1.2E+02 0.0026 28.9 4.9 66 257-334 323-388 (519)
168 COG0823 TolB Periplasmic compo 27.4 2.6E+02 0.0056 27.1 7.5 73 257-339 248-323 (425)
169 PF08662 eIF2A: Eukaryotic tra 27.0 3.8E+02 0.0082 22.5 7.9 62 258-333 72-136 (194)
170 KOG3881 Uncharacterized conser 26.9 5.5E+02 0.012 24.4 15.0 62 163-232 172-237 (412)
171 KOG0318 WD40 repeat stress pro 26.3 6.3E+02 0.014 25.1 9.4 35 303-337 490-524 (603)
172 KOG1240 Protein kinase contain 25.9 9.7E+02 0.021 26.8 12.1 55 270-333 1174-1228(1431)
173 KOG4378 Nuclear protein COP1 [ 25.7 2.7E+02 0.0058 27.4 6.9 31 303-333 253-283 (673)
174 KOG2315 Predicted translation 25.3 6.9E+02 0.015 24.9 14.7 143 94-277 230-390 (566)
175 KOG1963 WD40 repeat protein [G 25.3 8.2E+02 0.018 25.8 17.5 103 222-336 433-545 (792)
176 PF12894 Apc4_WD40: Anaphase-p 24.8 1.8E+02 0.004 18.1 4.7 30 303-332 14-43 (47)
177 KOG0303 Actin-binding protein 23.8 5.7E+02 0.012 24.4 8.4 66 268-345 153-218 (472)
178 KOG0293 WD40 repeat-containing 22.7 7E+02 0.015 24.0 12.6 112 222-354 377-492 (519)
179 PRK04922 tolB translocation pr 22.7 6.9E+02 0.015 24.0 19.2 187 104-338 228-419 (433)
180 PF13859 BNR_3: BNR repeat-lik 21.9 6.3E+02 0.014 23.3 13.8 104 175-288 101-212 (310)
181 cd00216 PQQ_DH Dehydrogenases 21.8 7.7E+02 0.017 24.2 13.4 128 204-337 106-271 (488)
182 PF01436 NHL: NHL repeat; Int 21.5 1.5E+02 0.0033 15.9 3.9 23 305-327 6-28 (28)
183 PF08268 FBA_3: F-box associat 20.9 3.9E+02 0.0085 20.5 10.0 93 162-263 18-118 (129)
184 PF14157 YmzC: YmzC-like prote 20.4 1.6E+02 0.0034 19.8 3.1 15 323-337 42-56 (63)
185 TIGR02276 beta_rpt_yvtn 40-res 20.3 1.9E+02 0.0041 16.7 4.5 25 311-335 2-27 (42)
186 KOG4190 Uncharacterized conser 20.1 2.5E+02 0.0054 27.9 5.6 104 103-232 803-909 (1034)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=6.6e-36 Score=263.95 Aligned_cols=224 Identities=25% Similarity=0.381 Sum_probs=164.5
Q ss_pred EeeecceEEEeeCCceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEE
Q 036391 90 LGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVY 169 (389)
Q Consensus 90 ~~s~~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vy 169 (389)
++|||||||+... ..++||||+|++++.||+++.+.... ....++||||+.+++||||++...... .....++||
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~~~~G~d~~~~~YKVv~~~~~~~~---~~~~~~~Vy 75 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNK-ESDTYFLGYDPIEKQYKVLCFSDRSGN---RNQSEHQVY 75 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccccc-ccceEEEeecccCCcEEEEEEEeecCC---CCCccEEEE
Confidence 4799999999864 78999999999999999876410111 122689999999999999999864321 144689999
Q ss_pred EcCCCcEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCC-CC-cEEEEEECCCceee-eeCCCCccccCC
Q 036391 170 SLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS-TR-SVIMAFNLVAKEFY-QLPLPDSVNVSY 246 (389)
Q Consensus 170 ss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~-~~il~fD~~~e~~~-~i~~P~~~~~~~ 246 (389)
++++++||.++..+. ... ....+|++||++||++.... .. ..|++||+.+|+|+ .+++|.... .
T Consensus 76 s~~~~~Wr~~~~~~~----------~~~-~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~--~ 142 (230)
T TIGR01640 76 TLGSNSWRTIECSPP----------HHP-LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNS--D 142 (230)
T ss_pred EeCCCCccccccCCC----------Ccc-ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccc--c
Confidence 999999999974331 111 12238999999999986522 22 38999999999999 589987653 1
Q ss_pred CceEEEEEEeCCeEEEEEecCC-CeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc-CcE-
Q 036391 247 ANVHVDVGSLEGCLCVFCFYNL-VYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REK- 323 (389)
Q Consensus 247 ~~~~~~l~~~~G~L~~~~~~~~-~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~-~~~- 323 (389)
......|++++|+|+++..... ..++||+|++++. +.|+++++|++...........|+++..+|++++.... ..+
T Consensus 143 ~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~ 221 (230)
T TIGR01640 143 SVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFY 221 (230)
T ss_pred cccceEEEEECCEEEEEEecCCCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceE
Confidence 2224689999999999987543 4699999998874 45999999986433322222568888888765555432 134
Q ss_pred EEEEeCCCC
Q 036391 324 LVWFDLETN 332 (389)
Q Consensus 324 l~~yd~~~~ 332 (389)
++.||++++
T Consensus 222 ~~~y~~~~~ 230 (230)
T TIGR01640 222 IFYYNVGEN 230 (230)
T ss_pred EEEEeccCC
Confidence 999999875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.72 E-value=7.4e-16 Score=128.23 Aligned_cols=149 Identities=27% Similarity=0.495 Sum_probs=99.2
Q ss_pred eeeECCeEEEEccCCCCC--cEEEEEECCCcee-eeeCCCCccccCCCceEEEEEEe-CCeEEEEEecCC-CeEEEEEEe
Q 036391 203 GVLAGGALHWVSPKSSTR--SVIMAFNLVAKEF-YQLPLPDSVNVSYANVHVDVGSL-EGCLCVFCFYNL-VYVDMWMMK 277 (389)
Q Consensus 203 ~v~~~G~lywl~~~~~~~--~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~-~~l~iW~l~ 277 (389)
+|++||++||++...... ..|++||+.+|+| ..+++|.... .......|++. +|+||++..... ..++||+|+
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~--~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCND--DDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccC--ccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 589999999999873322 2799999999999 7899998764 12334567554 789999975433 379999999
Q ss_pred eCCC-CCCeEEEEEEcCCCCCCCcce-eeeEEEEeCCCEEEEEEc-C------cEEEEEeCCCCcEEEEEEecCCC-Cce
Q 036391 278 EHAV-KESWTKLISVQEPTPTRSFLF-LRPLGYSRNGVKLLLEVR-R------EKLVWFDLETNSLRTVKIDTHGL-DFV 347 (389)
Q Consensus 278 ~~~~-~~~W~~~~~i~~~~~~~~~~~-~~p~~~~~~g~~i~l~~~-~------~~l~~yd~~~~~~~~v~~~~~g~-~~~ 347 (389)
+++. .++|+|.++|++......... ..+..+..+++.+++..+ . ..++.|+ +++..+++.+. .+. .+.
T Consensus 79 ~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~-~~~~~~~ 156 (164)
T PF07734_consen 79 KYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIE-DKSSCWP 156 (164)
T ss_pred eeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccc-cCCCCCC
Confidence 8753 789999999997654432211 122222233334444322 1 3477787 77778888662 121 256
Q ss_pred eeEEEEec
Q 036391 348 DTEICMAS 355 (389)
Q Consensus 348 ~~~~y~~S 355 (389)
....|+||
T Consensus 157 ~~~~YvpS 164 (164)
T PF07734_consen 157 SICNYVPS 164 (164)
T ss_pred CEEEECCC
Confidence 66788886
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.66 E-value=1.6e-15 Score=121.05 Aligned_cols=112 Identities=20% Similarity=0.397 Sum_probs=85.3
Q ss_pred eeeECCeEEEEccC-CCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEEEEecCCC---eEEEEEEee
Q 036391 203 GVLAGGALHWVSPK-SSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLV---YVDMWMMKE 278 (389)
Q Consensus 203 ~v~~~G~lywl~~~-~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~---~l~iW~l~~ 278 (389)
|+++||.+||++.. ......|++||+++|+|+.|++|.... .......|.+++|+|+++...... .++||+|+|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~--~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPY--SSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeec--cccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 58999999999876 456689999999999999999992221 233356899999999999876543 599999999
Q ss_pred CCCCCCeEEEEEEcCCCCCCC--cceeeeEEEEeCCCEEEE
Q 036391 279 HAVKESWTKLISVQEPTPTRS--FLFLRPLGYSRNGVKLLL 317 (389)
Q Consensus 279 ~~~~~~W~~~~~i~~~~~~~~--~~~~~p~~~~~~g~~i~l 317 (389)
++ +++|++.+.+-+...... .....+.++..+|++|+.
T Consensus 79 ~~-k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 79 YE-KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cc-cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 87 588998876444322211 135788888888877776
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.53 E-value=9.1e-12 Score=114.25 Aligned_cols=319 Identities=10% Similarity=0.064 Sum_probs=158.8
Q ss_pred CCCCcHHHHHHHHhcCC-ccchhhhcccchhhhhhhCCHHHHHHHHhcccCCCCCeEEEEEe----CceEEec-CCCCcc
Q 036391 2 SKKIPLDIIADIFCRQP-VKSLLRFRCVSKTCCSLIDSQDFIKLHLNHSITTRSNRRLILKA----AYFLTLT-LGIGVQ 75 (389)
Q Consensus 2 ~~~LP~Dll~~IL~rLP-~ksl~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~~~~~l~~~~----~~~~~~~-~~~~~~ 75 (389)
|++||+|||..|..||| .-++.|||+||++||+.+.... ...+.. ..+.++... ..+...+ .....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~- 75 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG-----KKNPFR--TRPLILFNPINPSETLTDDRSYISRP- 75 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc-----ccCCcc--cccccccCcccCCCCccccccccccc-
Confidence 67999999999999997 6689999999999999876421 000000 011111111 0000000 00000
Q ss_pred ccCCCCCCCCCcEE---EeeecceEEEeeC---CceEEEEcCCcccccccCCCCCCCCCCC-c----eeEEEE-eeecC-
Q 036391 76 PHHHPLNIGSGTEV---LGSCNGLIALCNS---VQELALFNPSTRKLKTLPLPPCFVGFPS-A----FIFYGF-GQDKS- 142 (389)
Q Consensus 76 ~~~~p~~~~~~~~~---~~s~~GLl~l~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~-~----~~~~~~-g~~~~- 142 (389)
...+.....+.+ .++..|.|..... .+.+.+.||+++.-..+|+-.. +.-. . ...+.+ +.+..
T Consensus 76 --~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~l--nll~f~v~ei~~~y~l~~~~~~~ 151 (373)
T PLN03215 76 --GAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESV--DLLEFTVSEIREAYQVLDWAKRR 151 (373)
T ss_pred --cceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccc--eeeeeEEEEccceEEEEeccccc
Confidence 000000000111 1345777766543 4689999999999777774322 1110 1 011111 11100
Q ss_pred --CCCeeEEEEEEEeCCCCCCceeEEEEEEc------CCCcEEEcccCCcccccccccccccccccCceeeECCeEEEEc
Q 036391 143 --NDDYKLVRVLHFKGNDGEDVEVEVEVYSL------KINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVS 214 (389)
Q Consensus 143 --~~~ykvv~~~~~~~~~~~~~~~~~~Vyss------~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~ 214 (389)
...|+-+.+......++ .....+-|+.- +.++|..++... . .....|+.+|.+|-+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~-~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~----------~----~~~DIi~~kGkfYAvD 216 (373)
T PLN03215 152 ETRPGYQRSALVKVKEGDN-HRDGVLGIGRDGKINYWDGNVLKALKQMG----------Y----HFSDIIVHKGQTYALD 216 (373)
T ss_pred ccccceeEEEEEEeecCCC-cceEEEEEeecCcEeeecCCeeeEccCCC----------c----eeeEEEEECCEEEEEc
Confidence 11131111111111111 01112222211 247888776433 1 2334689999999984
Q ss_pred cCCCCCcEEEEEECCCceeeeeCCCC--ccccCCCceEEEEEEeCCeEEEEEecC----------------CCeEEEEEE
Q 036391 215 PKSSTRSVIMAFNLVAKEFYQLPLPD--SVNVSYANVHVDVGSLEGCLCVFCFYN----------------LVYVDMWMM 276 (389)
Q Consensus 215 ~~~~~~~~il~fD~~~e~~~~i~~P~--~~~~~~~~~~~~l~~~~G~L~~~~~~~----------------~~~l~iW~l 276 (389)
.. ..+.++|..-+ -..+..+. ............|++..|.|++|...- ...+.|+++
T Consensus 217 ~~----G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vfkl 291 (373)
T PLN03215 217 SI----GIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKF 291 (373)
T ss_pred CC----CeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEE
Confidence 32 45667774321 12221111 111001112357999999999997621 126888999
Q ss_pred eeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEE------eCCCEEEEEEcCcEEEEEeCCCCcEEEEEEecCCCCceeeE
Q 036391 277 KEHAVKESWTKLISVQEPTPTRSFLFLRPLGYS------RNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLDFVDTE 350 (389)
Q Consensus 277 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~------~~g~~i~l~~~~~~l~~yd~~~~~~~~v~~~~~g~~~~~~~ 350 (389)
+. ....|+++..++-..+.-... ...++. -.++-|++..+ ....+||++.++...+...........+.
T Consensus 292 D~--~~~~WveV~sLgd~aLFlG~~--~s~sv~a~e~pG~k~NcIYFtdd-~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 366 (373)
T PLN03215 292 DD--ELAKWMEVKTLGDNAFVMATD--TCFSVLAHEFYGCLPNSIYFTED-TMPKVFKLDNGNGSSIETTISESSQSSFE 366 (373)
T ss_pred cC--CCCcEEEecccCCeEEEEECC--ccEEEecCCCCCccCCEEEEECC-CcceEEECCCCCccceEeecCccccchhe
Confidence 85 346899998876443221000 111111 13577888754 45889999999988774421211134455
Q ss_pred EEEeccc
Q 036391 351 ICMASLV 357 (389)
Q Consensus 351 ~y~~Sl~ 357 (389)
++.+|++
T Consensus 367 ~~~~~~~ 373 (373)
T PLN03215 367 MFVPSFL 373 (373)
T ss_pred eeccccC
Confidence 6666653
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.37 E-value=8.6e-11 Score=116.45 Aligned_cols=196 Identities=11% Similarity=0.106 Sum_probs=124.4
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCC
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
..+..+||.+++|..+|+++. ... ....+.+ + =||..++... +......+++|++.+++|..++.+|
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~--~R~-~~~~~~~--~-----g~IYviGG~~---~~~~~~sve~Ydp~~~~W~~~~~mp 386 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIK--NRC-RFSLAVI--D-----DTIYAIGGQN---GTNVERTIECYTMGDDKWKMLPDMP 386 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcc--hhh-ceeEEEE--C-----CEEEEECCcC---CCCCCceEEEEECCCCeEEECCCCC
Confidence 357899999999999999875 211 1122222 1 2555555321 1123457999999999999998888
Q ss_pred cccccccccccccccccCceeeECCeEEEEccCCC--------------------CCcEEEEEECCCceeeee-CCCCcc
Q 036391 184 RFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--------------------TRSVIMAFNLVAKEFYQL-PLPDSV 242 (389)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--------------------~~~~il~fD~~~e~~~~i-~~P~~~ 242 (389)
. .......+.++|.||.+++... ....+.+||+.+++|+.+ ++|...
T Consensus 387 ~------------~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r 454 (557)
T PHA02713 387 I------------ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT 454 (557)
T ss_pred c------------ccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc
Confidence 2 2344567889999999987521 124699999999999987 455443
Q ss_pred ccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCC-CC-CCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc
Q 036391 243 NVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHA-VK-ESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR 320 (389)
Q Consensus 243 ~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~-~~-~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~ 320 (389)
. ...+++++|+||++++........=..+.|. .. +.|+.+..++.... ...+++. +|.+.+++..
T Consensus 455 ~------~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~------~~~~~~~-~~~iyv~Gg~ 521 (557)
T PHA02713 455 I------RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS------ALHTILH-DNTIMMLHCY 521 (557)
T ss_pred c------cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc------cceeEEE-CCEEEEEeee
Confidence 2 2467899999999987532111111123333 23 47998876654321 2223333 4444444432
Q ss_pred Cc--EEEEEeCCCCcEEEE
Q 036391 321 RE--KLVWFDLETNSLRTV 337 (389)
Q Consensus 321 ~~--~l~~yd~~~~~~~~v 337 (389)
++ .+-+||+.|++|+.+
T Consensus 522 ~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 522 ESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred cceeehhhcCcccccccch
Confidence 32 478999999999987
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.27 E-value=3.4e-10 Score=111.96 Aligned_cols=209 Identities=17% Similarity=0.224 Sum_probs=136.8
Q ss_pred EEeeecceEEEee-C------CceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCC
Q 036391 89 VLGSCNGLIALCN-S------VQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGED 161 (389)
Q Consensus 89 ~~~s~~GLl~l~~-~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~ 161 (389)
-++..+|.|-+.. . .+.+..+||.+++|..+|++.. .. ..++++ .-+.++.+++... +..
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--~R----~~~~v~----~l~g~iYavGG~d---g~~ 393 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--KR----SDFGVA----VLDGKLYAVGGFD---GEK 393 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--cc----ccceeE----EECCEEEEEeccc---ccc
Confidence 3455566554433 1 2468999999999999999975 21 111111 1124555555432 233
Q ss_pred ceeEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCC---CcEEEEEECCCceeeee-C
Q 036391 162 VEVEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSST---RSVIMAFNLVAKEFYQL-P 237 (389)
Q Consensus 162 ~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~---~~~il~fD~~~e~~~~i-~ 237 (389)
....+|.|+..++.|..++.++. .......+.++|.+|-+++.... -..+.+||+.+++|+.+ +
T Consensus 394 ~l~svE~YDp~~~~W~~va~m~~------------~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~ 461 (571)
T KOG4441|consen 394 SLNSVECYDPVTNKWTPVAPMLT------------RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP 461 (571)
T ss_pred ccccEEEecCCCCcccccCCCCc------------ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC
Confidence 55689999999999999998872 33556678899999999986322 37899999999999998 6
Q ss_pred CCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCC-CCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEE
Q 036391 238 LPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHA-VKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLL 316 (389)
Q Consensus 238 ~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~ 316 (389)
++.... ...+++++|+||++++.+.. -.+=..+-|. ....|+.+..+.... ...++..-++.++
T Consensus 462 M~~~R~------~~g~a~~~~~iYvvGG~~~~-~~~~~VE~ydp~~~~W~~v~~m~~~r--------s~~g~~~~~~~ly 526 (571)
T KOG4441|consen 462 MNTRRS------GFGVAVLNGKIYVVGGFDGT-SALSSVERYDPETNQWTMVAPMTSPR--------SAVGVVVLGGKLY 526 (571)
T ss_pred cccccc------cceEEEECCEEEEECCccCC-CccceEEEEcCCCCceeEcccCcccc--------ccccEEEECCEEE
Confidence 776543 34689999999999986541 1111122222 356899885454432 1222222244555
Q ss_pred EEEc-C-----cEEEEEeCCCCcEEEE
Q 036391 317 LEVR-R-----EKLVWFDLETNSLRTV 337 (389)
Q Consensus 317 l~~~-~-----~~l~~yd~~~~~~~~v 337 (389)
+... + ..+-.||+.+++|+.+
T Consensus 527 ~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 527 AVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred EEecccCccccceeEEcCCCCCceeeC
Confidence 5422 1 2588999999999987
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.26 E-value=1.1e-09 Score=108.52 Aligned_cols=194 Identities=8% Similarity=0.036 Sum_probs=121.4
Q ss_pred eEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCCc
Q 036391 105 ELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLPR 184 (389)
Q Consensus 105 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p~ 184 (389)
.+..+||.+++|..++++|. ... ....+.+ + =+|+.++.... .......++.|++.++.|..++.+|
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~--~r~-~~~~a~l--~-----~~IYviGG~~~--~~~~~~~v~~Yd~~~n~W~~~~~m~- 339 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPN--HII-NYASAIV--D-----NEIIIAGGYNF--NNPSLNKVYKINIENKIHVELPPMI- 339 (557)
T ss_pred CEEEEeCCCCeEEECCCCCc--ccc-ceEEEEE--C-----CEEEEEcCCCC--CCCccceEEEEECCCCeEeeCCCCc-
Confidence 46788999999999998875 211 1111111 1 24555543211 1113457899999999999998877
Q ss_pred ccccccccccccccccCceeeECCeEEEEccCCC--CCcEEEEEECCCceeeee-CCCCccccCCCceEEEEEEeCCeEE
Q 036391 185 FLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS--TRSVIMAFNLVAKEFYQL-PLPDSVNVSYANVHVDVGSLEGCLC 261 (389)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~~l~~~~G~L~ 261 (389)
..+.....+.++|.+|.+++... ....+.+||+.+++|..+ ++|.... ....+.++|+|+
T Consensus 340 -----------~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~------~~~~~~~~g~IY 402 (557)
T PHA02713 340 -----------KNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS------SYGMCVLDQYIY 402 (557)
T ss_pred -----------chhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc------cccEEEECCEEE
Confidence 23345567899999999987622 234699999999999997 5555442 235678899999
Q ss_pred EEEecCCC--------------------eEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC
Q 036391 262 VFCFYNLV--------------------YVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR 321 (389)
Q Consensus 262 ~~~~~~~~--------------------~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~ 321 (389)
++++.... .-.+...+- ..+.|+.+..+..... ...+++. +|.+.+++..+
T Consensus 403 viGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r~------~~~~~~~-~~~IYv~GG~~ 473 (557)
T PHA02713 403 IIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGTI------RPGVVSH-KDDIYVVCDIK 473 (557)
T ss_pred EEeCCCcccccccccccccccccccccccceEEEECC--CCCeEeecCCCCcccc------cCcEEEE-CCEEEEEeCCC
Confidence 99875321 012333332 2467987765443221 1223333 44444443211
Q ss_pred ------cEEEEEeCCC-CcEEEE
Q 036391 322 ------EKLVWFDLET-NSLRTV 337 (389)
Q Consensus 322 ------~~l~~yd~~~-~~~~~v 337 (389)
..+..||+++ ++|+.+
T Consensus 474 ~~~~~~~~ve~Ydp~~~~~W~~~ 496 (557)
T PHA02713 474 DEKNVKTCIFRYNTNTYNGWELI 496 (557)
T ss_pred CCCccceeEEEecCCCCCCeeEc
Confidence 2367999999 899988
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.21 E-value=9.6e-10 Score=108.77 Aligned_cols=197 Identities=17% Similarity=0.173 Sum_probs=133.4
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCC
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
+.+..+||.+++|..+.+++. ... ..+.+.-. -+|+.++.... +......+++|++.+++|..++.|.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~--~r~----~~~~~~~~----~~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a~M~ 368 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPS--PRC----RVGVAVLN----GKLYVVGGYDS--GSDRLSSVERYDPRTNQWTPVAPMN 368 (571)
T ss_pred ceeEEecCCcCcEeecCCCCc--ccc----cccEEEEC----CEEEEEccccC--CCcccceEEEecCCCCceeccCCcc
Confidence 457788999999999999875 222 11222111 15555554321 2335678999999999999988777
Q ss_pred cccccccccccccccccCceeeECCeEEEEccCC--CCCcEEEEEECCCceeeee-CCCCccccCCCceEEEEEEeCCeE
Q 036391 184 RFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS--STRSVIMAFNLVAKEFYQL-PLPDSVNVSYANVHVDVGSLEGCL 260 (389)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~--~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~~l~~~~G~L 260 (389)
..+.....+.++|.+|-+++.. ..-..+..||+.+++|..+ +++.... ....++++|+|
T Consensus 369 ------------~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~------~~gv~~~~g~i 430 (571)
T KOG4441|consen 369 ------------TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS------GHGVAVLGGKL 430 (571)
T ss_pred ------------CccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCccee------eeEEEEECCEE
Confidence 3345566789999999999872 2235799999999999998 4766332 45789999999
Q ss_pred EEEEecCCCeEEEEEEeeCC-CCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc-C-----cEEEEEeCCCCc
Q 036391 261 CVFCFYNLVYVDMWMMKEHA-VKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-R-----EKLVWFDLETNS 333 (389)
Q Consensus 261 ~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~-~-----~~l~~yd~~~~~ 333 (389)
|++++.....-.+=..+-|. .++.|+.+..|..... ...+++. ++ .|+.... + ..+-.||+++++
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~------~~g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS------GFGVAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccccc------cceEEEE-CC-EEEEECCccCCCccceEEEEcCCCCc
Confidence 99998654332333344343 3578998876665431 2234444 44 5555422 1 247889999999
Q ss_pred EEEEE
Q 036391 334 LRTVK 338 (389)
Q Consensus 334 ~~~v~ 338 (389)
|..+.
T Consensus 503 W~~v~ 507 (571)
T KOG4441|consen 503 WTMVA 507 (571)
T ss_pred eeEcc
Confidence 99984
No 9
>PHA03098 kelch-like protein; Provisional
Probab=99.19 E-value=4.5e-09 Score=104.58 Aligned_cols=193 Identities=16% Similarity=0.096 Sum_probs=122.4
Q ss_pred eEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCCc
Q 036391 105 ELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLPR 184 (389)
Q Consensus 105 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p~ 184 (389)
.++.+||.|++|..+|+++. ... ....+.+ + =+++.++... .......+++|+..+++|+..+.+|
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~--~R~-~~~~~~~--~-----~~lyv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~lp- 377 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIY--PRK-NPGVTVF--N-----NRIYVIGGIY---NSISLNTVESWKPGESKWREEPPLI- 377 (534)
T ss_pred cEEEEeCCCCeeeECCCCCc--ccc-cceEEEE--C-----CEEEEEeCCC---CCEecceEEEEcCCCCceeeCCCcC-
Confidence 68899999999999998874 211 1122221 1 2355444322 1223457899999999999988777
Q ss_pred ccccccccccccccccCceeeECCeEEEEccCC---CCCcEEEEEECCCceeeee-CCCCccccCCCceEEEEEEeCCeE
Q 036391 185 FLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---STRSVIMAFNLVAKEFYQL-PLPDSVNVSYANVHVDVGSLEGCL 260 (389)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~---~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~~l~~~~G~L 260 (389)
..+.....+.++|.+|.+++.. .....+..||+.+++|..+ ++|.... ....+..+|+|
T Consensus 378 -----------~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~------~~~~~~~~~~i 440 (534)
T PHA03098 378 -----------FPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY------GGCAIYHDGKI 440 (534)
T ss_pred -----------cCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc------CceEEEECCEE
Confidence 2234556778999999998741 1225799999999999997 4554432 23467789999
Q ss_pred EEEEecCCC-----eEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc-----CcEEEEEeCC
Q 036391 261 CVFCFYNLV-----YVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-----REKLVWFDLE 330 (389)
Q Consensus 261 ~~~~~~~~~-----~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~-----~~~l~~yd~~ 330 (389)
+++++.... .-.+|..+- .+..|+.+..++.+. .....+.. ++.+++++.. ...+..||++
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~~r------~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNP--VTNKWTELSSLNFPR------INASLCIF-NNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred EEECCccCCCCCcccceEEEecC--CCCceeeCCCCCccc------ccceEEEE-CCEEEEEcCCcCCcccceeEEEeCC
Confidence 999864321 123666664 346898875433221 11122232 4444444321 1358999999
Q ss_pred CCcEEEE
Q 036391 331 TNSLRTV 337 (389)
Q Consensus 331 ~~~~~~v 337 (389)
+++|+.+
T Consensus 512 ~~~W~~~ 518 (534)
T PHA03098 512 TNTWTLF 518 (534)
T ss_pred CCEEEec
Confidence 9999988
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.16 E-value=4e-09 Score=103.05 Aligned_cols=185 Identities=11% Similarity=-0.030 Sum_probs=117.5
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCC
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
..+..+||.+++|..+|+++. ... ....+. .+ =+|..++... ....++.|+..+++|..++.+|
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~--~r~-~~~~v~--~~-----~~iYviGG~~------~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNS--PRL-YASGVP--AN-----NKLYVVGGLP------NPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CeEEEEECCCCEEEECCCCCc--hhh-cceEEE--EC-----CEEEEECCcC------CCCceEEEECCCCeEEECCCCC
Confidence 356778999999999999875 211 111221 11 2455554321 1135789999999999998877
Q ss_pred cccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCceeeeeC-CCCccccCCCceEEEEEEeCCeEEE
Q 036391 184 RFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQLP-LPDSVNVSYANVHVDVGSLEGCLCV 262 (389)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~l~~~~G~L~~ 262 (389)
.......++.++|.||.+++.......+.+||+.+++|+.++ +|.... ....++.+|+|++
T Consensus 351 ------------~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~------~~~~~~~~~~IYv 412 (480)
T PHA02790 351 ------------KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY------KSCALVFGRRLFL 412 (480)
T ss_pred ------------CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc------cceEEEECCEEEE
Confidence 223455678999999999876333356889999999999984 443332 2356789999999
Q ss_pred EEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC-----cEEEEEeCCCCcEEEE
Q 036391 263 FCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR-----EKLVWFDLETNSLRTV 337 (389)
Q Consensus 263 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~-----~~l~~yd~~~~~~~~v 337 (389)
+++. .+++- . .++.|+.+..+..+. .....++. +|.+.+++..+ ..+..||+++++|+.-
T Consensus 413 ~GG~----~e~yd---p-~~~~W~~~~~m~~~r------~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 413 VGRN----AEFYC---E-SSNTWTLIDDPIYPR------DNPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ECCc----eEEec---C-CCCcEeEcCCCCCCc------cccEEEEE-CCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 9752 22221 1 256899876544321 11223333 44443333211 2488999999999753
No 11
>PLN02153 epithiospecifier protein
Probab=99.12 E-value=4.9e-08 Score=91.43 Aligned_cols=209 Identities=13% Similarity=0.044 Sum_probs=118.9
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCC--ceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEccc
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPS--AFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISN 181 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~--~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~ 181 (389)
..++++||.+++|..+|+.... .... ...++.++ =+++.+.... .......+++|++.+++|+.++.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~-p~~~~~~~~~~~~~-------~~iyv~GG~~---~~~~~~~v~~yd~~t~~W~~~~~ 118 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDV-PRISCLGVRMVAVG-------TKLYIFGGRD---EKREFSDFYSYDTVKNEWTFLTK 118 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCC-CCCccCceEEEEEC-------CEEEEECCCC---CCCccCcEEEEECCCCEEEEecc
Confidence 3689999999999998875420 1111 11111111 2455444321 11233468999999999998875
Q ss_pred CCcccccccccccccccccCceeeECCeEEEEccCCCC--------CcEEEEEECCCceeeeeCCCCccccCCCceEEEE
Q 036391 182 LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSST--------RSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDV 253 (389)
Q Consensus 182 ~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~--------~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l 253 (389)
++... ....+.....+..+|.+|.+++.... -..+.+||+.+++|..++.+.... .......+
T Consensus 119 ~~~~~-------~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~--~~r~~~~~ 189 (341)
T PLN02153 119 LDEEG-------GPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF--EKRGGAGF 189 (341)
T ss_pred CCCCC-------CCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC--CCCCcceE
Confidence 52100 01223455678899999999875211 135889999999999886432111 01112356
Q ss_pred EEeCCeEEEEEecCC---------C-eEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc---
Q 036391 254 GSLEGCLCVFCFYNL---------V-YVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR--- 320 (389)
Q Consensus 254 ~~~~G~L~~~~~~~~---------~-~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~--- 320 (389)
+..+|+|+++..... . .-++++++- .+..|+++........ .+.....++. ++.++++...
T Consensus 190 ~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~---~r~~~~~~~~-~~~iyv~GG~~~~ 263 (341)
T PLN02153 190 AVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPS---ARSVFAHAVV-GKYIIIFGGEVWP 263 (341)
T ss_pred EEECCeEEEEeccccccccCCccceecCceEEEEc--CCCcEEeccccCCCCC---CcceeeeEEE-CCEEEEECcccCC
Confidence 788999999865321 0 124666653 2467998764321110 0111222222 3334444321
Q ss_pred -----------CcEEEEEeCCCCcEEEEE
Q 036391 321 -----------REKLVWFDLETNSLRTVK 338 (389)
Q Consensus 321 -----------~~~l~~yd~~~~~~~~v~ 338 (389)
...++.||+++++|+.+.
T Consensus 264 ~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 264 DLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred ccccccccccccccEEEEEcCccEEEecc
Confidence 125899999999999884
No 12
>PLN02193 nitrile-specifier protein
Probab=99.01 E-value=1.1e-07 Score=92.65 Aligned_cols=209 Identities=11% Similarity=0.061 Sum_probs=121.6
Q ss_pred eEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCCc
Q 036391 105 ELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLPR 184 (389)
Q Consensus 105 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p~ 184 (389)
.++++||.+++|..+|+.... +........+..++ =+++.+.... .......+++|++.+++|+.+..+..
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~-P~~~~~~~~~v~~~-----~~lYvfGG~~---~~~~~ndv~~yD~~t~~W~~l~~~~~ 264 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDV-PHLSCLGVRMVSIG-----STLYVFGGRD---ASRQYNGFYSFDTTTNEWKLLTPVEE 264 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCC-CCCcccceEEEEEC-----CEEEEECCCC---CCCCCccEEEEECCCCEEEEcCcCCC
Confidence 588999999999988754210 11111111111111 1344443221 11233568999999999999876521
Q ss_pred ccccccccccccccccCceeeECCeEEEEccCC--CCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEE
Q 036391 185 FLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS--STRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCV 262 (389)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~--~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~ 262 (389)
.+..+.....+.+++.||.+++.. .....+.+||+.+++|..++.|.... .......++..+|++++
T Consensus 265 ---------~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~--~~R~~~~~~~~~gkiyv 333 (470)
T PLN02193 265 ---------GPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSF--SIRGGAGLEVVQGKVWV 333 (470)
T ss_pred ---------CCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCC--CCCCCcEEEEECCcEEE
Confidence 012234456678999999998752 12346889999999999987653321 11112356778999999
Q ss_pred EEecCCC-eEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC--------------cEEEEE
Q 036391 263 FCFYNLV-YVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR--------------EKLVWF 327 (389)
Q Consensus 263 ~~~~~~~-~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~--------------~~l~~y 327 (389)
+...... .-++|+++- ....|+++..+...... +.....+.. ++.++++.... ..+++|
T Consensus 334 iGG~~g~~~~dv~~yD~--~t~~W~~~~~~g~~P~~---R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 334 VYGFNGCEVDDVHYYDP--VQDKWTQVETFGVRPSE---RSVFASAAV-GKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred EECCCCCccCceEEEEC--CCCEEEEeccCCCCCCC---cceeEEEEE-CCEEEEECCccCCccccccCccceeccEEEE
Confidence 8764321 346787775 24679887654211111 111222222 34444443211 148999
Q ss_pred eCCCCcEEEEEE
Q 036391 328 DLETNSLRTVKI 339 (389)
Q Consensus 328 d~~~~~~~~v~~ 339 (389)
|+.+++|+.+..
T Consensus 408 D~~t~~W~~~~~ 419 (470)
T PLN02193 408 DTETLQWERLDK 419 (470)
T ss_pred EcCcCEEEEccc
Confidence 999999998843
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.00 E-value=1e-07 Score=88.64 Aligned_cols=155 Identities=18% Similarity=0.185 Sum_probs=95.5
Q ss_pred eEEEE-cCCcc-cccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcE----EE
Q 036391 105 ELALF-NPSTR-KLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSW----RR 178 (389)
Q Consensus 105 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W----~~ 178 (389)
.+++. +|..+ +|..+++++. ... ....+ .++ =+|+.+.... .......++.|+..++.| +.
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~--~r~-~~~~~--~~~-----~~lyviGG~~---~~~~~~~v~~~d~~~~~w~~~~~~ 106 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPY--EAA-YGASV--SVE-----NGIYYIGGSN---SSERFSSVYRITLDESKEELICET 106 (323)
T ss_pred eeEEEecCCCceeEEEcccCCc--ccc-ceEEE--EEC-----CEEEEEcCCC---CCCCceeEEEEEEcCCceeeeeeE
Confidence 45655 45433 7888887764 211 11122 221 1345444321 112345788999999888 56
Q ss_pred cccCCcccccccccccccccccCceeeECCeEEEEccC--CCCCcEEEEEECCCceeeeeC-CCCccccCCCceEEEEEE
Q 036391 179 ISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK--SSTRSVIMAFNLVAKEFYQLP-LPDSVNVSYANVHVDVGS 255 (389)
Q Consensus 179 ~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~--~~~~~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~l~~ 255 (389)
++.+| .......++.++|.||.+++. ......+.+||+.+++|+.++ +|.... . ...++.
T Consensus 107 ~~~lp------------~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r---~--~~~~~~ 169 (323)
T TIGR03548 107 IGNLP------------FTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR---V--QPVCVK 169 (323)
T ss_pred cCCCC------------cCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC---C--cceEEE
Confidence 66666 222345678899999999874 122357999999999999985 664322 1 235678
Q ss_pred eCCeEEEEEecCCC-eEEEEEEeeCCCCCCeEEEEEE
Q 036391 256 LEGCLCVFCFYNLV-YVDMWMMKEHAVKESWTKLISV 291 (389)
Q Consensus 256 ~~G~L~~~~~~~~~-~l~iW~l~~~~~~~~W~~~~~i 291 (389)
.+|+|+++...... ..++|+.+- .+..|+.+..+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~--~~~~W~~~~~~ 204 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSP--KKNQWQKVADP 204 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEec--CCCeeEECCCC
Confidence 89999999875422 345666654 24689876543
No 14
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.97 E-value=3.5e-10 Score=72.74 Aligned_cols=42 Identities=19% Similarity=0.387 Sum_probs=36.7
Q ss_pred CCCCcHHHHHHHHhcCCccchhhhcccchhhhhhhCCHHHHH
Q 036391 2 SKKIPLDIIADIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIK 43 (389)
Q Consensus 2 ~~~LP~Dll~~IL~rLP~ksl~r~r~VcK~W~~li~s~~F~~ 43 (389)
|..||+|++.+||+.||++++.++..|||+|+.++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 678999999999999999999999999999999998876544
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.97 E-value=3.1e-07 Score=86.28 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=102.8
Q ss_pred eecceEEEee--CCceEEEEc--CCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCC---CCCcee
Q 036391 92 SCNGLIALCN--SVQELALFN--PSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGND---GEDVEV 164 (389)
Q Consensus 92 s~~GLl~l~~--~~~~~~V~N--P~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~---~~~~~~ 164 (389)
..++-|.+.. ....+++.+ |.+++|..+|+++. ........+.+ + =+|..+....... ......
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~--~~R~~~~~~~~--~-----~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPG--GPRNQAVAAAI--D-----GKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCC--CCcccceEEEE--C-----CEEEEEeCCCCCCCCCcceecc
Confidence 3445444432 224567777 47889999998863 11111112211 1 2455555432110 001234
Q ss_pred EEEEEEcCCCcEEEccc-CCcccccccccccccccccCcee-eECCeEEEEccCCCC-----------------------
Q 036391 165 EVEVYSLKINSWRRISN-LPRFLRDFYDYLYHSLFRKGYGV-LAGGALHWVSPKSST----------------------- 219 (389)
Q Consensus 165 ~~~Vyss~~~~W~~~~~-~p~~~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~----------------------- 219 (389)
.++.|+..+++|+.++. +| .......++ .++|.||.+++....
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p------------~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSP------------VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLI 153 (346)
T ss_pred cEEEEECCCCEEecCCCCCC------------CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhH
Confidence 78999999999999863 33 111122233 589999999865211
Q ss_pred -------------CcEEEEEECCCceeeee-CCCCccccCCCceEEEEEEeCCeEEEEEecCC---CeEEEEEEeeCCCC
Q 036391 220 -------------RSVIMAFNLVAKEFYQL-PLPDSVNVSYANVHVDVGSLEGCLCVFCFYNL---VYVDMWMMKEHAVK 282 (389)
Q Consensus 220 -------------~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~---~~l~iW~l~~~~~~ 282 (389)
...+.+||+.+++|+.+ ++|.... ....++..+|+|+++..... ....+|..+-....
T Consensus 154 ~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~ 228 (346)
T TIGR03547 154 AAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGT-----AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGK 228 (346)
T ss_pred HHHhCCChhHcCccceEEEEECCCCceeECccCCCCcC-----CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCC
Confidence 15799999999999998 4553221 12457888999999987532 23456665521224
Q ss_pred CCeEEEEEEcC
Q 036391 283 ESWTKLISVQE 293 (389)
Q Consensus 283 ~~W~~~~~i~~ 293 (389)
..|..+..++.
T Consensus 229 ~~W~~~~~m~~ 239 (346)
T TIGR03547 229 LEWNKLPPLPP 239 (346)
T ss_pred ceeeecCCCCC
Confidence 58988765543
No 16
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.86 E-value=1.1e-09 Score=70.80 Aligned_cols=45 Identities=33% Similarity=0.422 Sum_probs=38.1
Q ss_pred CCCCcHHHHHHHHhcCCccchhhhcccchhhhhhhCCHHHHHHHH
Q 036391 2 SKKIPLDIIADIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIKLHL 46 (389)
Q Consensus 2 ~~~LP~Dll~~IL~rLP~ksl~r~r~VcK~W~~li~s~~F~~~~~ 46 (389)
+.+||+|++.+||.+||.+++++++.|||+|++++.++.+...+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 457999999999999999999999999999999999999876543
No 17
>PLN02153 epithiospecifier protein
Probab=98.85 E-value=9.5e-07 Score=82.74 Aligned_cols=166 Identities=10% Similarity=0.093 Sum_probs=98.7
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCC---CCCceeEEEEEEcCCCcEEEcc
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGND---GEDVEVEVEVYSLKINSWRRIS 180 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~---~~~~~~~~~Vyss~~~~W~~~~ 180 (389)
..++++||.|++|..++++... ..+......++... .+ |++.++...... .......+++|+..+++|..++
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~-~~p~~R~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEE-GGPEARTFHSMASD--EN--HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCC-CCCCCceeeEEEEE--CC--EEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC
Confidence 3689999999999999875210 00111111111111 11 344444322110 0012246899999999999887
Q ss_pred cCCcccccccccccccccccCceeeECCeEEEEccCC----------CCCcEEEEEECCCceeeeeC----CCCccccCC
Q 036391 181 NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS----------STRSVIMAFNLVAKEFYQLP----LPDSVNVSY 246 (389)
Q Consensus 181 ~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~----------~~~~~il~fD~~~e~~~~i~----~P~~~~~~~ 246 (389)
.+.. ....+.....+.++|.+|.+++.. .....+.+||+.+++|..++ +|....
T Consensus 176 ~~~~---------~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~--- 243 (341)
T PLN02153 176 DPGE---------NFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS--- 243 (341)
T ss_pred CCCC---------CCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc---
Confidence 5431 001223345678999999886531 01246999999999999985 343321
Q ss_pred CceEEEEEEeCCeEEEEEecCC---------C--eEEEEEEeeCCCCCCeEEEEEE
Q 036391 247 ANVHVDVGSLEGCLCVFCFYNL---------V--YVDMWMMKEHAVKESWTKLISV 291 (389)
Q Consensus 247 ~~~~~~l~~~~G~L~~~~~~~~---------~--~l~iW~l~~~~~~~~W~~~~~i 291 (389)
....+..+++|+++..... . .-++|+++- ....|+.+...
T Consensus 244 ---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~--~~~~W~~~~~~ 294 (341)
T PLN02153 244 ---VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT--ETLVWEKLGEC 294 (341)
T ss_pred ---eeeeEEECCEEEEECcccCCccccccccccccccEEEEEc--CccEEEeccCC
Confidence 2356788999999987421 1 127899985 35789877543
No 18
>PHA03098 kelch-like protein; Provisional
Probab=98.83 E-value=1.9e-07 Score=92.98 Aligned_cols=192 Identities=10% Similarity=0.024 Sum_probs=117.0
Q ss_pred EEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCCcc
Q 036391 106 LALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLPRF 185 (389)
Q Consensus 106 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p~~ 185 (389)
+.-+|+.+++|..++..+. .....++.. + -+++.++..... ......+..|+..+++|..++.+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~-----~~lyv~GG~~~~--~~~~~~v~~yd~~~~~W~~~~~~~-- 330 (534)
T PHA03098 266 YITNYSPLSEINTIIDIHY----VYCFGSVVL--N-----NVIYFIGGMNKN--NLSVNSVVSYDTKTKSWNKVPELI-- 330 (534)
T ss_pred eeecchhhhhcccccCccc----cccceEEEE--C-----CEEEEECCCcCC--CCeeccEEEEeCCCCeeeECCCCC--
Confidence 4456888999988876553 111111111 1 234444432111 112346889999999999988776
Q ss_pred cccccccccccccccCceeeECCeEEEEccCC--CCCcEEEEEECCCceeeee-CCCCccccCCCceEEEEEEeCCeEEE
Q 036391 186 LRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS--STRSVIMAFNLVAKEFYQL-PLPDSVNVSYANVHVDVGSLEGCLCV 262 (389)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~--~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~~l~~~~G~L~~ 262 (389)
..+.....+.++|.+|.+++.. .....+.+||+.+++|+.+ ++|.... ....+..+|++++
T Consensus 331 ----------~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~------~~~~~~~~~~iYv 394 (534)
T PHA03098 331 ----------YPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY------NPCVVNVNNLIYV 394 (534)
T ss_pred ----------cccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc------cceEEEECCEEEE
Confidence 2234556788999999998762 1235689999999999987 4554432 2356788999999
Q ss_pred EEecCC--C-eEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc-C--------cEEEEEeCC
Q 036391 263 FCFYNL--V-YVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-R--------EKLVWFDLE 330 (389)
Q Consensus 263 ~~~~~~--~-~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~-~--------~~l~~yd~~ 330 (389)
+++... . .-.+++.+- .+..|..+..++... .....+.. ++ .|++... . ..+..||++
T Consensus 395 ~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~p~~r------~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 395 IGGISKNDELLKTVECFSL--NTNKWSKGSPLPISH------YGGCAIYH-DG-KIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred ECCcCCCCcccceEEEEeC--CCCeeeecCCCCccc------cCceEEEE-CC-EEEEECCccCCCCCcccceEEEecCC
Confidence 987421 1 224566553 246798765433221 11122222 34 4554321 1 248999999
Q ss_pred CCcEEEEE
Q 036391 331 TNSLRTVK 338 (389)
Q Consensus 331 ~~~~~~v~ 338 (389)
+++|+.+.
T Consensus 465 ~~~W~~~~ 472 (534)
T PHA03098 465 TNKWTELS 472 (534)
T ss_pred CCceeeCC
Confidence 99999883
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.76 E-value=3.3e-06 Score=80.16 Aligned_cols=177 Identities=14% Similarity=0.048 Sum_probs=102.5
Q ss_pred eeecceEEEee--CCceEEEEcCC--cccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeC-CCC--CCce
Q 036391 91 GSCNGLIALCN--SVQELALFNPS--TRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKG-NDG--EDVE 163 (389)
Q Consensus 91 ~s~~GLl~l~~--~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~-~~~--~~~~ 163 (389)
+..++-|.+.. ....+++.++. +++|..+|+++. ........+.++ + +|+.++.... ... ....
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~--~~r~~~~~v~~~-----~--~IYV~GG~~~~~~~~~~~~~ 105 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPG--GPREQAVAAFID-----G--KLYVFGGIGKTNSEGSPQVF 105 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCC--CCcccceEEEEC-----C--EEEEEcCCCCCCCCCceeEc
Confidence 44555554432 23456777764 588999997753 111111112111 2 3444443221 000 0123
Q ss_pred eEEEEEEcCCCcEEEccc-CCcccccccccccccccccCceee-ECCeEEEEccCCC-----------------------
Q 036391 164 VEVEVYSLKINSWRRISN-LPRFLRDFYDYLYHSLFRKGYGVL-AGGALHWVSPKSS----------------------- 218 (389)
Q Consensus 164 ~~~~Vyss~~~~W~~~~~-~p~~~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~----------------------- 218 (389)
..+++|+..+++|+.+.. .| .......++. .+|.||.+++...
T Consensus 106 ~~v~~YD~~~n~W~~~~~~~p------------~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i 173 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDTRSP------------VGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKI 173 (376)
T ss_pred ccEEEEeCCCCEEEeCCCCCC------------CcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhh
Confidence 468999999999999874 23 1112233344 7999999987521
Q ss_pred -------------CCcEEEEEECCCceeeee-CCCCccccCCCceEEEEEEeCCeEEEEEecC---CCeEEEEEEeeCCC
Q 036391 219 -------------TRSVIMAFNLVAKEFYQL-PLPDSVNVSYANVHVDVGSLEGCLCVFCFYN---LVYVDMWMMKEHAV 281 (389)
Q Consensus 219 -------------~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~l~iW~l~~~~~ 281 (389)
....+.+||+.+++|..+ ++|.... ....++..+++|+++.... ....++|..+-...
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~-----~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~ 248 (376)
T PRK14131 174 NDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT-----AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGN 248 (376)
T ss_pred HHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCC-----CcceEEEECCEEEEEeeeECCCcCChhheEEEecCC
Confidence 024699999999999998 4554221 1235677899999998742 22456776553223
Q ss_pred CCCeEEEEEEcC
Q 036391 282 KESWTKLISVQE 293 (389)
Q Consensus 282 ~~~W~~~~~i~~ 293 (389)
...|.++..++.
T Consensus 249 ~~~W~~~~~~p~ 260 (376)
T PRK14131 249 NLKWQKLPDLPP 260 (376)
T ss_pred CcceeecCCCCC
Confidence 468998876543
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=98.73 E-value=6.7e-07 Score=87.52 Aligned_cols=166 Identities=12% Similarity=0.029 Sum_probs=106.1
Q ss_pred ceeEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCceeeee-CCCC
Q 036391 162 VEVEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQL-PLPD 240 (389)
Q Consensus 162 ~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i-~~P~ 240 (389)
....++.|++.+++|..++.++. .......+.++|.+|.+++.. ....+..||+.+++|..+ ++|.
T Consensus 285 ~~~~v~~Ydp~~~~W~~~~~m~~------------~r~~~~~v~~~~~iYviGG~~-~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 285 IHNNAIAVNYISNNWIPIPPMNS------------PRLYASGVPANNKLYVVGGLP-NPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred cCCeEEEEECCCCEEEECCCCCc------------hhhcceEEEECCEEEEECCcC-CCCceEEEECCCCeEEECCCCCC
Confidence 34568899999999999988772 223455788999999998752 235689999999999987 5554
Q ss_pred ccccCCCceEEEEEEeCCeEEEEEecCCC--eEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEE
Q 036391 241 SVNVSYANVHVDVGSLEGCLCVFCFYNLV--YVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLE 318 (389)
Q Consensus 241 ~~~~~~~~~~~~l~~~~G~L~~~~~~~~~--~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~ 318 (389)
... ....++++|+||++++.... .+..+ +- ..+.|+.+..++.+.. ....+.. + +.|++.
T Consensus 352 ~r~------~~~~~~~~g~IYviGG~~~~~~~ve~y--dp--~~~~W~~~~~m~~~r~------~~~~~~~-~-~~IYv~ 413 (480)
T PHA02790 352 PRC------NPAVASINNVIYVIGGHSETDTTTEYL--LP--NHDQWQFGPSTYYPHY------KSCALVF-G-RRLFLV 413 (480)
T ss_pred CCc------ccEEEEECCEEEEecCcCCCCccEEEE--eC--CCCEEEeCCCCCCccc------cceEEEE-C-CEEEEE
Confidence 432 34678999999999875422 33333 21 2468987654443221 1122222 3 456554
Q ss_pred EcCcEEEEEeCCCCcEEEEEEecCCCC-ceeeEEEEeccccCCC
Q 036391 319 VRREKLVWFDLETNSLRTVKIDTHGLD-FVDTEICMASLVPLSD 361 (389)
Q Consensus 319 ~~~~~l~~yd~~~~~~~~v~~~~~g~~-~~~~~~y~~Sl~~~~~ 361 (389)
. +..-+||+++++|+.+.-. .... ...+..+...+.-+..
T Consensus 414 G--G~~e~ydp~~~~W~~~~~m-~~~r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 414 G--RNAEFYCESSNTWTLIDDP-IYPRDNPELIIVDNKLLLIGG 454 (480)
T ss_pred C--CceEEecCCCCcEeEcCCC-CCCccccEEEEECCEEEEECC
Confidence 2 3477899999999988321 1111 4445555555555544
No 21
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.72 E-value=6.9e-09 Score=64.60 Aligned_cols=39 Identities=46% Similarity=0.698 Sum_probs=36.8
Q ss_pred CcHHHHHHHHhcCCccchhhhcccchhhhhhhCCHHHHH
Q 036391 5 IPLDIIADIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIK 43 (389)
Q Consensus 5 LP~Dll~~IL~rLP~ksl~r~r~VcK~W~~li~s~~F~~ 43 (389)
||+|++.+||.+||.+++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988753
No 22
>PLN02193 nitrile-specifier protein
Probab=98.67 E-value=1.1e-05 Score=78.69 Aligned_cols=162 Identities=11% Similarity=0.067 Sum_probs=100.1
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCC
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
+.++++||.|++|..++++... +.++....+. .. +=|++.+..... ......+++|+..+++|..+....
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~-P~~R~~h~~~-~~-----~~~iYv~GG~~~---~~~~~~~~~yd~~t~~W~~~~~~~ 313 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEG-PTPRSFHSMA-AD-----EENVYVFGGVSA---TARLKTLDSYNIVDKKWFHCSTPG 313 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCC-CCCccceEEE-EE-----CCEEEEECCCCC---CCCcceEEEEECCCCEEEeCCCCC
Confidence 4689999999999999876310 0111111111 11 124444443211 123456889999999999876421
Q ss_pred cccccccccccccccccCceeeECCeEEEEccCC-CCCcEEEEEECCCceeeeeCC----CCccccCCCceEEEEEEeCC
Q 036391 184 RFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS-STRSVIMAFNLVAKEFYQLPL----PDSVNVSYANVHVDVGSLEG 258 (389)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-~~~~~il~fD~~~e~~~~i~~----P~~~~~~~~~~~~~l~~~~G 258 (389)
. ....+.....+.++|.+|.+++.. .....+.+||+.+++|+.++. |... .....+..++
T Consensus 314 ~---------~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R------~~~~~~~~~~ 378 (470)
T PLN02193 314 D---------SFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSER------SVFASAAVGK 378 (470)
T ss_pred C---------CCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCc------ceeEEEEECC
Confidence 0 011223455678899999987641 223579999999999999842 3222 1235678899
Q ss_pred eEEEEEecCC---------Ce--EEEEEEeeCCCCCCeEEEEEEc
Q 036391 259 CLCVFCFYNL---------VY--VDMWMMKEHAVKESWTKLISVQ 292 (389)
Q Consensus 259 ~L~~~~~~~~---------~~--l~iW~l~~~~~~~~W~~~~~i~ 292 (389)
+|+++..... .. -++|.++- .+..|+.+..+.
T Consensus 379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~--~t~~W~~~~~~~ 421 (470)
T PLN02193 379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDT--ETLQWERLDKFG 421 (470)
T ss_pred EEEEECCccCCccccccCccceeccEEEEEc--CcCEEEEcccCC
Confidence 9999987421 11 26899986 356898876544
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.30 E-value=6.1e-05 Score=70.00 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=86.1
Q ss_pred cEEEcccCCcccccccccccccccccCceeeECCeEEEEccCC--CCCcEEEEEECCCcee----eee-CCCCccccCCC
Q 036391 175 SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS--STRSVIMAFNLVAKEF----YQL-PLPDSVNVSYA 247 (389)
Q Consensus 175 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~--~~~~~il~fD~~~e~~----~~i-~~P~~~~~~~~ 247 (389)
+|..+..+|. ......++.+++.||.+++.. .....+..||+.+++| ..+ ++|....
T Consensus 52 ~W~~~~~lp~------------~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~---- 115 (323)
T TIGR03548 52 KWVKDGQLPY------------EAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFE---- 115 (323)
T ss_pred eEEEcccCCc------------cccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCcc----
Confidence 7999887772 223345688899999998752 1235788999999988 333 3444332
Q ss_pred ceEEEEEEeCCeEEEEEecCC--CeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC----
Q 036391 248 NVHVDVGSLEGCLCVFCFYNL--VYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---- 321 (389)
Q Consensus 248 ~~~~~l~~~~G~L~~~~~~~~--~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~---- 321 (389)
....+..+|+|+++..... ..-++|+++- .+..|+++..++... + ....++.-++.+.++...+
T Consensus 116 --~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p~~~-----r-~~~~~~~~~~~iYv~GG~~~~~~ 185 (323)
T TIGR03548 116 --NGSACYKDGTLYVGGGNRNGKPSNKSYLFNL--ETQEWFELPDFPGEP-----R-VQPVCVKLQNELYVFGGGSNIAY 185 (323)
T ss_pred --CceEEEECCEEEEEeCcCCCccCceEEEEcC--CCCCeeECCCCCCCC-----C-CcceEEEECCEEEEEcCCCCccc
Confidence 2356788999999987522 1235777764 246898875443211 1 1222222344444443221
Q ss_pred cEEEEEeCCCCcEEEEE
Q 036391 322 EKLVWFDLETNSLRTVK 338 (389)
Q Consensus 322 ~~l~~yd~~~~~~~~v~ 338 (389)
..+..||+++++|+.+.
T Consensus 186 ~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 186 TDGYKYSPKKNQWQKVA 202 (323)
T ss_pred cceEEEecCCCeeEECC
Confidence 24789999999999883
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.28 E-value=0.00025 Score=67.35 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=90.6
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCC
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
..+.++||.|++|..+++++. .. ..... ....+ -|++.+.................|+.++++|..+..+|
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~--~~-~~~~a-~v~~~-----~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p 259 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPF--LG-TAGSA-VVIKG-----NKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLP 259 (376)
T ss_pred ceEEEEECCCCeeeECCcCCC--CC-CCcce-EEEEC-----CEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCC
Confidence 458999999999999987763 11 11111 11111 35665554322111112222334567889999998776
Q ss_pred ccccccccccccccc--ccCceeeECCeEEEEccCCCC-------------------CcEEEEEECCCceeeee-CCCCc
Q 036391 184 RFLRDFYDYLYHSLF--RKGYGVLAGGALHWVSPKSST-------------------RSVIMAFNLVAKEFYQL-PLPDS 241 (389)
Q Consensus 184 ~~~~~~~~~~~~~~~--~~~~~v~~~G~lywl~~~~~~-------------------~~~il~fD~~~e~~~~i-~~P~~ 241 (389)
.... ..... ....++.++|.||.+++.... ...+.+||+.+++|+.+ ++|..
T Consensus 260 ~~~~------~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~ 333 (376)
T PRK14131 260 PAPG------GSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG 333 (376)
T ss_pred CCCc------CCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC
Confidence 2110 00000 111256789999999864110 01357899999999987 56654
Q ss_pred cccCCCceEEEEEEeCCeEEEEEecCC---CeEEEEEEee
Q 036391 242 VNVSYANVHVDVGSLEGCLCVFCFYNL---VYVDMWMMKE 278 (389)
Q Consensus 242 ~~~~~~~~~~~l~~~~G~L~~~~~~~~---~~l~iW~l~~ 278 (389)
.. ....+.++|+|+++..... ..-+|+.++.
T Consensus 334 r~------~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~ 367 (376)
T PRK14131 334 LA------YGVSVSWNNGVLLIGGETAGGKAVSDVTLLSW 367 (376)
T ss_pred cc------ceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEE
Confidence 42 2357889999999997532 2446777764
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.27 E-value=0.00027 Score=66.38 Aligned_cols=142 Identities=14% Similarity=0.116 Sum_probs=84.8
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEc--CCCcEEEccc
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSL--KINSWRRISN 181 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss--~~~~W~~~~~ 181 (389)
..+.++||.|++|..+++++. ........+ .++ =|++.+....... .....+++|+. +++.|..+..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~--~~r~~~~~~--~~~-----~~iyv~GG~~~~~--~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPF--LGTAGSAIV--HKG-----NKLLLINGEIKPG--LRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred ceEEEEECCCCceeECccCCC--CcCCCceEE--EEC-----CEEEEEeeeeCCC--ccchheEEEEecCCCceeeecCC
Confidence 468899999999999998763 111111111 112 2555554432111 12234555654 6779999988
Q ss_pred CCcccccccccccccccccCceeeECCeEEEEccCCC-------------------CCcEEEEEECCCceeeee-CCCCc
Q 036391 182 LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSS-------------------TRSVIMAFNLVAKEFYQL-PLPDS 241 (389)
Q Consensus 182 ~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-------------------~~~~il~fD~~~e~~~~i-~~P~~ 241 (389)
+|..... .+.......++.++|.||.+++... ....+.+||+.+++|+.+ ++|..
T Consensus 237 m~~~r~~-----~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~ 311 (346)
T TIGR03547 237 LPPPKSS-----SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG 311 (346)
T ss_pred CCCCCCC-----ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC
Confidence 7621000 0000112235779999999986411 012678999999999987 56654
Q ss_pred cccCCCceEEEEEEeCCeEEEEEecC
Q 036391 242 VNVSYANVHVDVGSLEGCLCVFCFYN 267 (389)
Q Consensus 242 ~~~~~~~~~~~l~~~~G~L~~~~~~~ 267 (389)
.. ....+.++|+|+++....
T Consensus 312 ~~------~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 312 LA------YGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred ce------eeEEEEcCCEEEEEeccC
Confidence 32 235678899999999753
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.14 E-value=0.00012 Score=66.99 Aligned_cols=212 Identities=18% Similarity=0.184 Sum_probs=122.0
Q ss_pred CceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEE--EeCCCCCC--ceeEEEEEEcCCCcEEE
Q 036391 103 VQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLH--FKGNDGED--VEVEVEVYSLKINSWRR 178 (389)
Q Consensus 103 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~--~~~~~~~~--~~~~~~Vyss~~~~W~~ 178 (389)
.+.+|++|--+.+|+.+-.+.. +.++ +...+...++. .+.++. ........ .-.-..+|++.+++|..
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~--P~pR--sshq~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNA--PPPR--SSHQAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred eeeeeEEeccccceeEeccCCC--cCCC--ccceeEEeccC----eEEEeccccCCcchhhhhhhhheeeeeeccchhee
Confidence 4579999999999998754432 1122 12222223322 222322 11111100 11235689999999998
Q ss_pred ccc--CCcccccccccccccccccCceeeECCeEEEEccC-CC-----CCcEEEEEECCCceeeeeCCCCccccCCCceE
Q 036391 179 ISN--LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK-SS-----TRSVIMAFNLVAKEFYQLPLPDSVNVSYANVH 250 (389)
Q Consensus 179 ~~~--~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~-~~-----~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~ 250 (389)
+.. .| ..++.+..|...-.|.-+++. .. .-.-+.+||+.+-+|+.+..+........+
T Consensus 169 l~~~g~P------------S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSG-- 234 (521)
T KOG1230|consen 169 LEFGGGP------------SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG-- 234 (521)
T ss_pred eccCCCC------------CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCc--
Confidence 862 33 223444555555544444432 11 113589999999999999655432210222
Q ss_pred EEEEEe-CCeEEEEEecC-----------CCeEEEEEEeeCC---CCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEE
Q 036391 251 VDVGSL-EGCLCVFCFYN-----------LVYVDMWMMKEHA---VKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKL 315 (389)
Q Consensus 251 ~~l~~~-~G~L~~~~~~~-----------~~~l~iW~l~~~~---~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i 315 (389)
+++.+. +|.++|..+.. ...-++|.|+... ++-.|+++-.+.+.+-. +....+++++|+..+
T Consensus 235 cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPsp---Rsgfsv~va~n~kal 311 (521)
T KOG1230|consen 235 CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSP---RSGFSVAVAKNHKAL 311 (521)
T ss_pred ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCC---CCceeEEEecCCceE
Confidence 345555 88888876532 2366899998532 22357777665554322 223457788888888
Q ss_pred EEEE--c------------CcEEEEEeCCCCcEEEEEE
Q 036391 316 LLEV--R------------REKLVWFDLETNSLRTVKI 339 (389)
Q Consensus 316 ~l~~--~------------~~~l~~yd~~~~~~~~v~~ 339 (389)
+|.. + .+.|+.||+..++|....+
T Consensus 312 ~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 312 FFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred EecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 8752 1 0259999999999987655
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.13 E-value=0.00012 Score=63.13 Aligned_cols=213 Identities=12% Similarity=0.126 Sum_probs=120.6
Q ss_pred CceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEE-----EeCCCCCCceeEEEEEEcCCCcEE
Q 036391 103 VQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLH-----FKGNDGEDVEVEVEVYSLKINSWR 177 (389)
Q Consensus 103 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~-----~~~~~~~~~~~~~~Vyss~~~~W~ 177 (389)
.-.+.|.|..+-+|.++|+--.....+..+..+- |. .-...||.... .++.++........-|+.+++.|.
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VP--yq--RYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~ 118 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVP--YQ--RYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWK 118 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCccc--hh--hcCceEEEEcceEEEEcCccCcccccceeeeecccccccc
Confidence 3468999999999999998332001111111110 00 00111221111 122232345567788999999998
Q ss_pred Ecc---cCCcccccccccccccccccCceeeECCeEEEEccC----CCCCcEEEEEECCCceeeeeC---CCCccccCCC
Q 036391 178 RIS---NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK----SSTRSVIMAFNLVAKEFYQLP---LPDSVNVSYA 247 (389)
Q Consensus 178 ~~~---~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~----~~~~~~il~fD~~~e~~~~i~---~P~~~~~~~~ 247 (389)
..+ .+| ..+..++++..+..+|-+++. +.-..-+-+||+.+.+|+.+. .|+...
T Consensus 119 ~p~v~G~vP------------gaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR---- 182 (392)
T KOG4693|consen 119 KPEVEGFVP------------GARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR---- 182 (392)
T ss_pred ccceeeecC------------CccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh----
Confidence 765 344 223456778888899998865 112245889999999999984 455442
Q ss_pred ceEEEEEEeCCeEEEEEecCCC-----------eEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEE
Q 036391 248 NVHVDVGSLEGCLCVFCFYNLV-----------YVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLL 316 (389)
Q Consensus 248 ~~~~~l~~~~G~L~~~~~~~~~-----------~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~ 316 (389)
.|+ ...+.+|..+++....+. .-.|=.|+- .++.|.....- ...+..+.... .+.-||++.+
T Consensus 183 DFH-~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~---~~~P~GRRSHS-~fvYng~~Y~ 255 (392)
T KOG4693|consen 183 DFH-TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPEN---TMKPGGRRSHS-TFVYNGKMYM 255 (392)
T ss_pred hhh-hhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCC---CcCCCcccccc-eEEEcceEEE
Confidence 232 456678888888764321 223334442 24568665211 11111111111 2223676666
Q ss_pred EEEcC-------cEEEEEeCCCCcEEEEEEecCCC
Q 036391 317 LEVRR-------EKLVWFDLETNSLRTVKIDTHGL 344 (389)
Q Consensus 317 l~~~~-------~~l~~yd~~~~~~~~v~~~~~g~ 344 (389)
+.... +.|+.||++|..|..|+. .|.
T Consensus 256 FGGYng~ln~HfndLy~FdP~t~~W~~I~~--~Gk 288 (392)
T KOG4693|consen 256 FGGYNGTLNVHFNDLYCFDPKTSMWSVISV--RGK 288 (392)
T ss_pred ecccchhhhhhhcceeecccccchheeeec--cCC
Confidence 65321 359999999999999987 554
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.83 E-value=0.00071 Score=60.54 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=38.2
Q ss_pred CCCCc----HHHHHHHHhcCCccchhhhcccchhhhhhhCCHHHHH
Q 036391 2 SKKIP----LDIIADIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIK 43 (389)
Q Consensus 2 ~~~LP----~Dll~~IL~rLP~ksl~r~r~VcK~W~~li~s~~F~~ 43 (389)
+..|| +++.+.||+.|...+|..|..|||+|+.+++++-..+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 45789 9999999999999999999999999999999986544
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.44 E-value=0.0049 Score=53.50 Aligned_cols=159 Identities=17% Similarity=0.275 Sum_probs=94.7
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcc---
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRIS--- 180 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~--- 180 (389)
+.++-++|-|.+|.+.--...--.......++.+| +...|+.-+ .++.+.....+++++..|-.||.+.
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g-----n~MyiFGGy---e~~a~~FS~d~h~ld~~TmtWr~~~Tkg 176 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG-----NQMYIFGGY---EEDAQRFSQDTHVLDFATMTWREMHTKG 176 (392)
T ss_pred ceeeeeccccccccccceeeecCCccCCceeeEEC-----cEEEEecCh---HHHHHhhhccceeEeccceeeeehhccC
Confidence 35778899999998632111100111122333333 112222111 1111224457889999999999886
Q ss_pred cCCcccccccccccccccccCceeeECCeEEEEccCC-----------CCCcEEEEEECCCceeeeeC----CCCccccC
Q 036391 181 NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS-----------STRSVIMAFNLVAKEFYQLP----LPDSVNVS 245 (389)
Q Consensus 181 ~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-----------~~~~~il~fD~~~e~~~~i~----~P~~~~~~ 245 (389)
++|.| +..+.++..+|.+|.+++++ .....|++||+.++.|..-+ +|....
T Consensus 177 ~Pprw------------RDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR-- 242 (392)
T KOG4693|consen 177 DPPRW------------RDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR-- 242 (392)
T ss_pred CCchh------------hhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc--
Confidence 34422 23456788889999998761 12257999999999998752 233221
Q ss_pred CCceEEEEEEeCCeEEEEEecCCC----eEEEEEEeeCCCCCCeEEEEE
Q 036391 246 YANVHVDVGSLEGCLCVFCFYNLV----YVDMWMMKEHAVKESWTKLIS 290 (389)
Q Consensus 246 ~~~~~~~l~~~~G~L~~~~~~~~~----~l~iW~l~~~~~~~~W~~~~~ 290 (389)
....-+.+|+++++...... .-++|..+- .+..|.++..
T Consensus 243 ----SHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~~ 285 (392)
T KOG4693|consen 243 ----SHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVISV 285 (392)
T ss_pred ----ccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheeeec
Confidence 23567889999999875321 346888875 3467987753
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=7.8e-05 Score=65.79 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=36.5
Q ss_pred CCCCcHHHHHHHHhcCCccchhhhcccchhhhhhhCCHHH
Q 036391 2 SKKIPLDIIADIFCRQPVKSLLRFRCVSKTCCSLIDSQDF 41 (389)
Q Consensus 2 ~~~LP~Dll~~IL~rLP~ksl~r~r~VcK~W~~li~s~~F 41 (389)
|.+||||++..||+.||.|+|.++..|||+|+.+-++..-
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 5689999999999999999999999999999998776653
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.10 E-value=0.088 Score=51.68 Aligned_cols=207 Identities=16% Similarity=0.055 Sum_probs=119.8
Q ss_pred eEEEEcCCcccccccCCCCCCCCCCC-ceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCC
Q 036391 105 ELALFNPSTRKLKTLPLPPCFVGFPS-AFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 105 ~~~V~NP~T~~~~~LP~~~~~~~~~~-~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
.++|+|--++.|......... +.+. ....+.++ =+++.++.... .......++.|+..++.|+......
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~-p~~r~g~~~~~~~-------~~l~lfGG~~~--~~~~~~~l~~~d~~t~~W~~l~~~~ 158 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDE-PSPRYGHSLSAVG-------DKLYLFGGTDK--KYRNLNELHSLDLSTRTWSLLSPTG 158 (482)
T ss_pred eeEEeecCCcccccccccCCC-CCcccceeEEEEC-------CeEEEEccccC--CCCChhheEeccCCCCcEEEecCcC
Confidence 599999999888876544320 1111 11222222 23333332211 1123457899999999999875322
Q ss_pred cccccccccccccccccCceeeECCeEEEEccCC---CCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeE
Q 036391 184 RFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---STRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCL 260 (389)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~---~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L 260 (389)
. .+..+..++.+.++-.+|.+++.. .....+.+||+.+.+|..+....... .......++..++++
T Consensus 159 ~---------~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P--~pR~gH~~~~~~~~~ 227 (482)
T KOG0379|consen 159 D---------PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP--SPRYGHAMVVVGNKL 227 (482)
T ss_pred C---------CCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCC--CCCCCceEEEECCeE
Confidence 0 012345667778888888887651 13467999999999999985443322 112234678889999
Q ss_pred EEEEecC-C-C-eEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEE-EEc-------CcEEEEEeC
Q 036391 261 CVFCFYN-L-V-YVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLL-EVR-------REKLVWFDL 329 (389)
Q Consensus 261 ~~~~~~~-~-~-~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l-~~~-------~~~l~~yd~ 329 (389)
+++.... . . .=++|.|+-. +..|.++.... ..+..+......+. |+.+++ +.. -..++.||.
T Consensus 228 ~v~gG~~~~~~~l~D~~~ldl~--~~~W~~~~~~g---~~p~~R~~h~~~~~--~~~~~l~gG~~~~~~~~l~~~~~l~~ 300 (482)
T KOG0379|consen 228 LVFGGGDDGDVYLNDVHILDLS--TWEWKLLPTGG---DLPSPRSGHSLTVS--GDHLLLFGGGTDPKQEPLGDLYGLDL 300 (482)
T ss_pred EEEeccccCCceecceEeeecc--cceeeeccccC---CCCCCcceeeeEEE--CCEEEEEcCCcccccccccccccccc
Confidence 9987654 2 1 3479999853 35676432211 12222223344433 333443 311 124888999
Q ss_pred CCCcEEEEEE
Q 036391 330 ETNSLRTVKI 339 (389)
Q Consensus 330 ~~~~~~~v~~ 339 (389)
+++.|..+.-
T Consensus 301 ~~~~w~~~~~ 310 (482)
T KOG0379|consen 301 ETLVWSKVES 310 (482)
T ss_pred cccceeeeec
Confidence 9999998854
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.83 E-value=0.077 Score=52.10 Aligned_cols=175 Identities=18% Similarity=0.149 Sum_probs=104.1
Q ss_pred cceEEEeeCC------ceEEEEcCCcccccccCCCCCCCCCCC--ceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeE
Q 036391 94 NGLIALCNSV------QELALFNPSTRKLKTLPLPPCFVGFPS--AFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVE 165 (389)
Q Consensus 94 ~GLl~l~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~~--~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~ 165 (389)
+.|+++.... ..+...|+.|++|..+..... ..+. ...+++.| + ||+.++...... .....
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~--~P~~r~~Hs~~~~g------~-~l~vfGG~~~~~--~~~nd 191 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGD--PPPPRAGHSATVVG------T-KLVVFGGIGGTG--DSLND 191 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCC--CCCCcccceEEEEC------C-EEEEECCccCcc--cceee
Confidence 4555555422 378999999999999876543 1111 22222222 2 333333222111 14568
Q ss_pred EEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCeEEEEccCC---CCCcEEEEEECCCceeeeeCCCCcc
Q 036391 166 VEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKS---STRSVIMAFNLVAKEFYQLPLPDSV 242 (389)
Q Consensus 166 ~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~---~~~~~il~fD~~~e~~~~i~~P~~~ 242 (389)
++||+..+.+|..+..... .+.++..+..+.+++.++.+++.. ..-.-+..||+.+.+|..++.-...
T Consensus 192 l~i~d~~~~~W~~~~~~g~---------~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~ 262 (482)
T KOG0379|consen 192 LHIYDLETSTWSELDTQGE---------APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDL 262 (482)
T ss_pred eeeeccccccceecccCCC---------CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCC
Confidence 9999999999998863221 112334566677777777766542 1224699999999888843211111
Q ss_pred ccCCCceEEEEEEeCCeEEEEEecCC----CeEEEEEEeeCCCCCCeEEEEEEc
Q 036391 243 NVSYANVHVDVGSLEGCLCVFCFYNL----VYVDMWMMKEHAVKESWTKLISVQ 292 (389)
Q Consensus 243 ~~~~~~~~~~l~~~~G~L~~~~~~~~----~~l~iW~l~~~~~~~~W~~~~~i~ 292 (389)
. .......++..+..+++++.... ..-++|.|... +..|.++....
T Consensus 263 p--~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~~~~~~ 312 (482)
T KOG0379|consen 263 P--SPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE--TLVWSKVESVG 312 (482)
T ss_pred C--CCcceeeeEEECCEEEEEcCCccccccccccccccccc--ccceeeeeccc
Confidence 1 12234466777888888876544 24578888763 57899887666
No 33
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.71 E-value=0.0009 Score=59.41 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=40.3
Q ss_pred CCCCcHHHHHHHHhcCC-----ccchhhhcccchhhhhhhCCHHHHHHHHh
Q 036391 2 SKKIPLDIIADIFCRQP-----VKSLLRFRCVSKTCCSLIDSQDFIKLHLN 47 (389)
Q Consensus 2 ~~~LP~Dll~~IL~rLP-----~ksl~r~r~VcK~W~~li~s~~F~~~~~~ 47 (389)
|..||+|+|.+||.++= +.+|.++.+|||.|+-...+|+|.++.+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 46799999999998764 58999999999999999999999776554
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.63 E-value=0.1 Score=48.47 Aligned_cols=157 Identities=13% Similarity=0.144 Sum_probs=94.6
Q ss_pred EEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeEC-CeEEEEccC--CCC------CcEEEEEECCCceeee
Q 036391 165 EVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAG-GALHWVSPK--SST------RSVIMAFNLVAKEFYQ 235 (389)
Q Consensus 165 ~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~-G~lywl~~~--~~~------~~~il~fD~~~e~~~~ 235 (389)
...+|+-+++.|+.+..+. .+.++..+.+|.+. |.+|.+++. +.. ..-+-.||+.+.+|..
T Consensus 99 dLy~Yn~k~~eWkk~~spn----------~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPN----------APPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred eeeEEeccccceeEeccCC----------CcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchhee
Confidence 4678999999999886432 22344556667666 766655544 111 1248899999999999
Q ss_pred eCCCCccccCCCceEEEEEEeCCeEEEEEecCCC------eEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEE
Q 036391 236 LPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLV------YVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYS 309 (389)
Q Consensus 236 i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~------~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~ 309 (389)
+.++..... .. ...++..+-+|.++.+..+. .-++|..+= +.-.|.++.. +- . .+..+..+-+.+.
T Consensus 169 l~~~g~PS~-RS--GHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL--dtykW~Klep-sg-a-~PtpRSGcq~~vt 240 (521)
T KOG1230|consen 169 LEFGGGPSP-RS--GHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL--DTYKWSKLEP-SG-A-GPTPRSGCQFSVT 240 (521)
T ss_pred eccCCCCCC-Cc--cceeEEeeeeEEEEcceecCCCceEEeeeeEEEec--cceeeeeccC-CC-C-CCCCCCcceEEec
Confidence 988875532 12 23577888888887753221 235676653 2356998864 21 1 1112222335556
Q ss_pred eCCCEEEEEEcC--------------cEEEEEeCCC---CcEEEEEE
Q 036391 310 RNGVKLLLEVRR--------------EKLVWFDLET---NSLRTVKI 339 (389)
Q Consensus 310 ~~g~~i~l~~~~--------------~~l~~yd~~~---~~~~~v~~ 339 (389)
++|++++....+ ..++..++++ .+|++-.+
T Consensus 241 pqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kv 287 (521)
T KOG1230|consen 241 PQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKV 287 (521)
T ss_pred CCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeec
Confidence 678887776322 1477778776 34554444
No 35
>PF13964 Kelch_6: Kelch motif
Probab=96.54 E-value=0.0076 Score=38.79 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=32.4
Q ss_pred cCceeeECCeEEEEccCCC---CCcEEEEEECCCceeeee-CCC
Q 036391 200 KGYGVLAGGALHWVSPKSS---TRSVIMAFNLVAKEFYQL-PLP 239 (389)
Q Consensus 200 ~~~~v~~~G~lywl~~~~~---~~~~il~fD~~~e~~~~i-~~P 239 (389)
..+.|.++|.||.+++... ....+..||+++++|+.+ ++|
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 4567899999999988622 346899999999999998 454
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=95.24 E-value=0.038 Score=34.83 Aligned_cols=40 Identities=13% Similarity=0.303 Sum_probs=31.6
Q ss_pred cCceeeECCeEEEEccCC---CCCcEEEEEECCCceeeee-CCC
Q 036391 200 KGYGVLAGGALHWVSPKS---STRSVIMAFNLVAKEFYQL-PLP 239 (389)
Q Consensus 200 ~~~~v~~~G~lywl~~~~---~~~~~il~fD~~~e~~~~i-~~P 239 (389)
....+.++|.+|.+++.. .....+.+||+.+++|..+ ++|
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 446789999999998762 2336899999999999987 443
No 37
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.88 E-value=1.2 Score=39.29 Aligned_cols=171 Identities=16% Similarity=0.128 Sum_probs=93.3
Q ss_pred eeEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCC--ceeeeeCCCC
Q 036391 163 EVEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVA--KEFYQLPLPD 240 (389)
Q Consensus 163 ~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~--e~~~~i~~P~ 240 (389)
.....+|++.++++|.+.... ..+ .....+.-||.+.-.++.......+-.|++.+ ......+.+.
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~t----------d~F--CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~ 112 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQT----------DTF--CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN 112 (243)
T ss_pred eEEEEEEecCCCcEEeccCCC----------CCc--ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcc
Confidence 345678999999999886322 112 23345677888877666544445688888865 2333344444
Q ss_pred ccccCCCceEEEEEEe-CCeEEEEEecCCCeEEEEEEeeCC-CCCCeEEEEEEcCCCCCCCcceeeeE-EEEeCCCEEEE
Q 036391 241 SVNVSYANVHVDVGSL-EGCLCVFCFYNLVYVDMWMMKEHA-VKESWTKLISVQEPTPTRSFLFLRPL-GYSRNGVKLLL 317 (389)
Q Consensus 241 ~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~p~-~~~~~g~~i~l 317 (389)
.+. ...++.....+ ||++.++.+......+.|=-+... ....|....... . .......|. .+.++|++.++
T Consensus 113 ~m~--~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~--~--~~~~nlYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 113 DMQ--SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTS--D--TLPNNLYPFVHLLPDGNLFIF 186 (243)
T ss_pred ccc--CCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhh--c--cCccccCceEEEcCCCCEEEE
Confidence 443 45667777777 999999987764444444322111 011121111111 0 001123443 44578876555
Q ss_pred EEcCcEEEEEeCCCCcE-EEE-EEecCCCCceeeEEEEeccc
Q 036391 318 EVRREKLVWFDLETNSL-RTV-KIDTHGLDFVDTEICMASLV 357 (389)
Q Consensus 318 ~~~~~~l~~yd~~~~~~-~~v-~~~~~g~~~~~~~~y~~Sl~ 357 (389)
.. .+-..||.+++++ +.+ .+ .| ..+.++...|-+
T Consensus 187 an--~~s~i~d~~~n~v~~~lP~l--Pg--~~R~YP~sgssv 222 (243)
T PF07250_consen 187 AN--RGSIIYDYKTNTVVRTLPDL--PG--GPRNYPASGSSV 222 (243)
T ss_pred Ec--CCcEEEeCCCCeEEeeCCCC--CC--CceecCCCcceE
Confidence 43 3467789999976 454 33 22 234555554444
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.18 E-value=6.7 Score=39.09 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=38.5
Q ss_pred CCCCcHHHHHHHHhcCCccchhhhcccchhhhhhhCCHHHHH
Q 036391 2 SKKIPLDIIADIFCRQPVKSLLRFRCVSKTCCSLIDSQDFIK 43 (389)
Q Consensus 2 ~~~LP~Dll~~IL~rLP~ksl~r~r~VcK~W~~li~s~~F~~ 43 (389)
+..||.++...||..|+.+++++++.||+.|+.++.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 567999999999999999999999999999999998877655
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=93.86 E-value=0.21 Score=31.76 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=30.9
Q ss_pred cCceeeECCeEEEEccC-----CCCCcEEEEEECCCceeeeeCC
Q 036391 200 KGYGVLAGGALHWVSPK-----SSTRSVIMAFNLVAKEFYQLPL 238 (389)
Q Consensus 200 ~~~~v~~~G~lywl~~~-----~~~~~~il~fD~~~e~~~~i~~ 238 (389)
.+.++.++|+||.+++. ......+..||+++++|+.++.
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 45678999999999875 2233679999999999999854
No 40
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.20 E-value=5.3 Score=34.72 Aligned_cols=194 Identities=14% Similarity=0.118 Sum_probs=97.0
Q ss_pred ecceEEEeeCCceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcC
Q 036391 93 CNGLIALCNSVQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLK 172 (389)
Q Consensus 93 ~~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~ 172 (389)
.+|.+.+......++.+|+.|++...--..+. ..... +...+=+|+... ....+..++..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--~~~~~---------~~~~~~~v~v~~---------~~~~l~~~d~~ 94 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPG--PISGA---------PVVDGGRVYVGT---------SDGSLYALDAK 94 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSS--CGGSG---------EEEETTEEEEEE---------TTSEEEEEETT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccc--cccce---------eeeccccccccc---------ceeeeEecccC
Confidence 67777777678889999999988654332221 10011 111111222221 11156677766
Q ss_pred CC--cEE-EcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCce--eee-eCCCCcccc--
Q 036391 173 IN--SWR-RISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKE--FYQ-LPLPDSVNV-- 244 (389)
Q Consensus 173 ~~--~W~-~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~--~~~-i~~P~~~~~-- 244 (389)
++ .|+ .....+. . ...........++.+|.... ...|.++|+.+.+ |.. +..|.....
T Consensus 95 tG~~~W~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 160 (238)
T PF13360_consen 95 TGKVLWSIYLTSSPP---------A-GVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYPVGEPRGSSPIS 160 (238)
T ss_dssp TSCEEEEEEE-SSCT---------C-STB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred Ccceeeeeccccccc---------c-ccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEeecCCCCCCccee
Confidence 65 698 3433221 0 11122233444666766543 3689999988654 444 333332110
Q ss_pred CCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEE
Q 036391 245 SYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKL 324 (389)
Q Consensus 245 ~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l 324 (389)
........+...+|.+++...... .+.+ -++. ....|... ... .... ...+++.+++...++.+
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~~~g~-~~~~-d~~t--g~~~w~~~----~~~-------~~~~-~~~~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 161 SFSDINGSPVISDGRVYVSSGDGR-VVAV-DLAT--GEKLWSKP----ISG-------IYSL-PSVDGGTLYVTSSDGRL 224 (238)
T ss_dssp EETTEEEEEECCTTEEEEECCTSS-EEEE-ETTT--TEEEEEEC----SS--------ECEC-EECCCTEEEEEETTTEE
T ss_pred eecccccceEEECCEEEEEcCCCe-EEEE-ECCC--CCEEEEec----CCC-------ccCC-ceeeCCEEEEEeCCCEE
Confidence 001112344555776666654432 2322 2221 12236221 111 1111 23467788888767789
Q ss_pred EEEeCCCCcEEE
Q 036391 325 VWFDLETNSLRT 336 (389)
Q Consensus 325 ~~yd~~~~~~~~ 336 (389)
+++|++|++..+
T Consensus 225 ~~~d~~tG~~~W 236 (238)
T PF13360_consen 225 YALDLKTGKVVW 236 (238)
T ss_dssp EEEETTTTEEEE
T ss_pred EEEECCCCCEEe
Confidence 999999998765
No 41
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.18 E-value=5.6 Score=35.03 Aligned_cols=200 Identities=15% Similarity=0.153 Sum_probs=103.5
Q ss_pred cceEEEee-CCceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcC
Q 036391 94 NGLIALCN-SVQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLK 172 (389)
Q Consensus 94 ~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~ 172 (389)
+|-|.+.+ ....++.++|.+++...+..+. ..|+.++...+.+ +... .....+++..
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----------~~G~~~~~~~g~l--~v~~----------~~~~~~~d~~ 68 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----------PNGMAFDRPDGRL--YVAD----------SGGIAVVDPD 68 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS----------EEEEEEECTTSEE--EEEE----------TTCEEEEETT
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC----------CceEEEEccCCEE--EEEE----------cCceEEEecC
Confidence 55555555 4678999999998876544332 3456666322332 2211 1234566999
Q ss_pred CCcEEEcccCCcccccccccccccccccCceeeECCeEEEEccC---CCCC--cEEEEEECCCceeeee----CCCCccc
Q 036391 173 INSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK---SSTR--SVIMAFNLVAKEFYQL----PLPDSVN 243 (389)
Q Consensus 173 ~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~---~~~~--~~il~fD~~~e~~~~i----~~P~~~~ 243 (389)
++.++.+...+... ........-.+--+|.+|.-... .... ..|..+|.. .+...+ ..|..
T Consensus 69 ~g~~~~~~~~~~~~-------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNG-- 138 (246)
T PF08450_consen 69 TGKVTVLADLPDGG-------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNG-- 138 (246)
T ss_dssp TTEEEEEEEEETTC-------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEE--
T ss_pred CCcEEEEeeccCCC-------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccc--
Confidence 99998776542100 01111222344567887765433 1111 579999998 444433 22221
Q ss_pred cCCCceEEEEEEeCCe-EEEEEecCCCeEEEEEEeeCCCCCCeEEEEEE-cCCCCCCCcceeeeEEEEeCCCEEEEEEcC
Q 036391 244 VSYANVHVDVGSLEGC-LCVFCFYNLVYVDMWMMKEHAVKESWTKLISV-QEPTPTRSFLFLRPLGYSRNGVKLLLEVRR 321 (389)
Q Consensus 244 ~~~~~~~~~l~~~~G~-L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~ 321 (389)
+ ...-+|+ |++...... . ||+++-......+.....+ ...... ....-+++..+|.+.+-....
T Consensus 139 -------i-~~s~dg~~lyv~ds~~~-~--i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 139 -------I-AFSPDGKTLYVADSFNG-R--IWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp -------E-EEETTSSEEEEEETTTT-E--EEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETT
T ss_pred -------e-EECCcchheeecccccc-e--eEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCC
Confidence 1 1223554 555444322 3 6666643222335544333 322211 123446676677644434456
Q ss_pred cEEEEEeCCCCcEEEEEE
Q 036391 322 EKLVWFDLETNSLRTVKI 339 (389)
Q Consensus 322 ~~l~~yd~~~~~~~~v~~ 339 (389)
.+++.||++.+....|.+
T Consensus 205 ~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 205 GRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp TEEEEEETTSCEEEEEE-
T ss_pred CEEEEECCCccEEEEEcC
Confidence 789999999777888877
No 42
>smart00612 Kelch Kelch domain.
Probab=93.04 E-value=0.33 Score=30.07 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=18.9
Q ss_pred ceeEEEEEEcCCCcEEEcccCC
Q 036391 162 VEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 162 ~~~~~~Vyss~~~~W~~~~~~p 183 (389)
....+++|+.++++|+....++
T Consensus 13 ~~~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeeeEEEECCCCCeEccCCCCC
Confidence 4567899999999999988777
No 43
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.03 E-value=6.4 Score=36.85 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=82.7
Q ss_pred cEEEeeecceEEEeeCCceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCC--Ccee
Q 036391 87 TEVLGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGE--DVEV 164 (389)
Q Consensus 87 ~~~~~s~~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~--~~~~ 164 (389)
..+.+-.+.-|+..+.....+|+++.|.....+|.+.. . +.....+.+| + +++.+......... ....
T Consensus 69 ~~F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~--p-k~~pisv~VG-----~--~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 69 MDFFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHS--P-KRCPISVSVG-----D--KLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred eEEEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCC--C-CcceEEEEeC-----C--eEEEeeccCccccccCccce
Confidence 34444434444444445678999999999999998764 1 1122222232 1 24444432211110 0001
Q ss_pred EEEEE--E--------cCCCcEEEcccCCccccccccccccccc------ccCceeeECCeEEEEccCCCCCcEEEEEEC
Q 036391 165 EVEVY--S--------LKINSWRRISNLPRFLRDFYDYLYHSLF------RKGYGVLAGGALHWVSPKSSTRSVIMAFNL 228 (389)
Q Consensus 165 ~~~Vy--s--------s~~~~W~~~~~~p~~~~~~~~~~~~~~~------~~~~~v~~~G~lywl~~~~~~~~~il~fD~ 228 (389)
.+|++ + ..+.+|+.+..+| +.... ....+|. +|.--|++..+ ....-.+||+
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~PP----------f~~~~~~~~~~i~sYavv-~g~~I~vS~~~-~~~GTysfDt 206 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPPPP----------FVRDRRYSDYRITSYAVV-DGRTIFVSVNG-RRWGTYSFDT 206 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCCCC----------ccccCCcccceEEEEEEe-cCCeEEEEecC-CceEEEEEEc
Confidence 44444 3 2345788887655 11111 2234555 88888885431 1136899999
Q ss_pred CCceeeee---CCCCcccc-CCCceEEEEEEe--C--CeEEEEEec
Q 036391 229 VAKEFYQL---PLPDSVNV-SYANVHVDVGSL--E--GCLCVFCFY 266 (389)
Q Consensus 229 ~~e~~~~i---~~P~~~~~-~~~~~~~~l~~~--~--G~L~~~~~~ 266 (389)
++.+|+.. .||-.... +.....+.++.. + |.||.+...
T Consensus 207 ~~~~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~ 252 (342)
T PF07893_consen 207 ESHEWRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVS 252 (342)
T ss_pred CCcceeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEecc
Confidence 99999986 67764332 111223344444 3 366665543
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=92.67 E-value=0.39 Score=30.06 Aligned_cols=35 Identities=26% Similarity=0.579 Sum_probs=25.5
Q ss_pred eEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCC
Q 036391 147 KLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 147 kvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
+|+.++.... .......+++|+..+++|+.++.||
T Consensus 13 ~iyv~GG~~~--~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 13 KIYVIGGYDG--NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEEEBES--TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEEeeecc--cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 4555554443 2346789999999999999987765
No 45
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=91.98 E-value=0.3 Score=30.98 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=22.8
Q ss_pred cCceeeE-CCeEEEEccCC---CCCcEEEEEECCCceeeee
Q 036391 200 KGYGVLA-GGALHWVSPKS---STRSVIMAFNLVAKEFYQL 236 (389)
Q Consensus 200 ~~~~v~~-~G~lywl~~~~---~~~~~il~fD~~~e~~~~i 236 (389)
.+.++.+ ++.+|.+++.. .....+..||+.+++|+.+
T Consensus 4 ~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp S-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred eEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 3445666 58888887651 1234689999999999998
No 46
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=91.64 E-value=5.7 Score=37.16 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=62.7
Q ss_pred cEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEEEEecCCC---------eEEEEEEee----CCCCCCeEE
Q 036391 221 SVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLV---------YVDMWMMKE----HAVKESWTK 287 (389)
Q Consensus 221 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~---------~l~iW~l~~----~~~~~~W~~ 287 (389)
...+.||.++......|...... . .......+|+||+....... .+++-.... ......|.=
T Consensus 86 ~~t~vyDt~t~av~~~P~l~~pk----~-~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W 160 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATGPRLHSPK----R-CPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSW 160 (342)
T ss_pred CCeEEEECCCCeEeccCCCCCCC----c-ceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceE
Confidence 45899998888777554322221 1 12334448889998754211 333332221 112334432
Q ss_pred EEEEcCCCCCCCcce----eeeEEEEeCCCEEEEEEcCc--EEEEEeCCCCcEEEE
Q 036391 288 LISVQEPTPTRSFLF----LRPLGYSRNGVKLLLEVRRE--KLVWFDLETNSLRTV 337 (389)
Q Consensus 288 ~~~i~~~~~~~~~~~----~~p~~~~~~g~~i~l~~~~~--~l~~yd~~~~~~~~v 337 (389)
.. ++.+.+...... ..-.+++ +|..|++...+. .-+.||.++.+|+++
T Consensus 161 ~~-LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 161 RS-LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred Ec-CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 22 343333322211 4455667 789999977655 699999999999988
No 47
>smart00284 OLF Olfactomedin-like domains.
Probab=91.03 E-value=7 Score=34.68 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=75.2
Q ss_pred ccCceeeECCeEEEEccCCCCCcEEEEEECCCceeee-eCCCCcccc----C--CCceEEEEEEeCCeEEEEEecC--CC
Q 036391 199 RKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQ-LPLPDSVNV----S--YANVHVDVGSLEGCLCVFCFYN--LV 269 (389)
Q Consensus 199 ~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~-i~~P~~~~~----~--~~~~~~~l~~~~G~L~~~~~~~--~~ 269 (389)
.....|..||.+|+-... ...|+.||+.+++... -.+|..... + ...-.+.+++-+..|-++-... ..
T Consensus 75 ~GtG~VVYngslYY~~~~---s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g 151 (255)
T smart00284 75 QGTGVVVYNGSLYFNKFN---SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG 151 (255)
T ss_pred ccccEEEECceEEEEecC---CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence 345578999999996432 3579999999999864 456753211 0 1122478999998898876542 34
Q ss_pred eEEEEEEeeCC--CCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc----C-cEEEEEeCCCCcEEEEEE
Q 036391 270 YVDMWMMKEHA--VKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR----R-EKLVWFDLETNSLRTVKI 339 (389)
Q Consensus 270 ~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~----~-~~l~~yd~~~~~~~~v~~ 339 (389)
.|.|-.|+... ..+.|..-+ +-.. ... +|--.| +++.... . .-.++||+.+++-+.+.+
T Consensus 152 ~ivvSkLnp~tL~ve~tW~T~~--~k~s------a~n--aFmvCG-vLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 152 KIVISKLNPATLTIENTWITTY--NKRS------ASN--AFMICG-ILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred CEEEEeeCcccceEEEEEEcCC--Cccc------ccc--cEEEee-EEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 78888887532 234565422 1111 011 111124 3333321 1 237789999988777766
No 48
>PF13964 Kelch_6: Kelch motif
Probab=90.57 E-value=0.39 Score=30.63 Aligned_cols=22 Identities=27% Similarity=0.687 Sum_probs=19.8
Q ss_pred ceeEEEEEEcCCCcEEEcccCC
Q 036391 162 VEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 162 ~~~~~~Vyss~~~~W~~~~~~p 183 (389)
....+++|+.++++|+.++.+|
T Consensus 26 ~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 26 YSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred ccccEEEEcCCCCcEEECCCCC
Confidence 5678999999999999998877
No 49
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=90.37 E-value=2.6 Score=33.24 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=53.1
Q ss_pred cEEEEEECCCc--eeeeeCCCCccccCC--------CceEEEEEEeCCeEEEEEecC---------CCeEEEEEEeeC-C
Q 036391 221 SVIMAFNLVAK--EFYQLPLPDSVNVSY--------ANVHVDVGSLEGCLCVFCFYN---------LVYVDMWMMKEH-A 280 (389)
Q Consensus 221 ~~il~fD~~~e--~~~~i~~P~~~~~~~--------~~~~~~l~~~~G~L~~~~~~~---------~~~l~iW~l~~~-~ 280 (389)
.+|+..|+-.+ .++-|++|....... ......+++.+|+|-++.... ...+.+|.|+.. +
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 35788888765 566688887653211 122347888999998887542 227999999974 2
Q ss_pred CCCCeEEEEEEcCCCCC
Q 036391 281 VKESWTKLISVQEPTPT 297 (389)
Q Consensus 281 ~~~~W~~~~~i~~~~~~ 297 (389)
....|.+.+++....+.
T Consensus 86 ~~~~W~~d~~v~~~diw 102 (131)
T PF07762_consen 86 SSWEWKKDCEVDLSDIW 102 (131)
T ss_pred CCCCEEEeEEEEhhhcc
Confidence 35789999999876543
No 50
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.11 E-value=14 Score=31.97 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=76.6
Q ss_pred EEEEEEcCCC--cEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCceeee-eCCCCc
Q 036391 165 EVEVYSLKIN--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQ-LPLPDS 241 (389)
Q Consensus 165 ~~~Vyss~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~-i~~P~~ 241 (389)
.+..++..++ .|+.--... ........+.-+|.+|.... ...|.++|..+.+-.. ..++..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~------------~~~~~~~~~~~~~~v~~~~~----~~~l~~~d~~tG~~~W~~~~~~~ 67 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPG------------IGGPVATAVPDGGRVYVASG----DGNLYALDAKTGKVLWRFDLPGP 67 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSS------------CSSEEETEEEETTEEEEEET----TSEEEEEETTTSEEEEEEECSSC
T ss_pred EEEEEECCCCCEEEEEECCCC------------CCCccceEEEeCCEEEEEcC----CCEEEEEECCCCCEEEEeecccc
Confidence 4567787766 588632111 00011124557888887633 3689999986654322 333444
Q ss_pred cccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEE-EEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc
Q 036391 242 VNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTK-LISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR 320 (389)
Q Consensus 242 ~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~-~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~ 320 (389)
.. .. ....+|.+++..... .++.++-...+..|.. ...-+... . ..+....-+++.+++...
T Consensus 68 ~~---~~----~~~~~~~v~v~~~~~----~l~~~d~~tG~~~W~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~ 130 (238)
T PF13360_consen 68 IS---GA----PVVDGGRVYVGTSDG----SLYALDAKTGKVLWSIYLTSSPPAG----V--RSSSSPAVDGDRLYVGTS 130 (238)
T ss_dssp GG---SG----EEEETTEEEEEETTS----EEEEEETTTSCEEEEEEE-SSCTCS----T--B--SEEEEETTEEEEEET
T ss_pred cc---ce----eeeccccccccccee----eeEecccCCcceeeeeccccccccc----c--ccccCceEecCEEEEEec
Confidence 32 11 366778887766322 5666662223567863 32211111 0 112222223678888877
Q ss_pred CcEEEEEeCCCCcEEEE
Q 036391 321 REKLVWFDLETNSLRTV 337 (389)
Q Consensus 321 ~~~l~~yd~~~~~~~~v 337 (389)
.+.++.+|+++++..+-
T Consensus 131 ~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 131 SGKLVALDPKTGKLLWK 147 (238)
T ss_dssp CSEEEEEETTTTEEEEE
T ss_pred cCcEEEEecCCCcEEEE
Confidence 78899999999987544
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.06 E-value=25 Score=33.52 Aligned_cols=193 Identities=9% Similarity=0.058 Sum_probs=99.3
Q ss_pred ecceEEEeeCCceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcC
Q 036391 93 CNGLIALCNSVQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLK 172 (389)
Q Consensus 93 ~~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~ 172 (389)
.+|.|.+...+..++.+|+.|++.+.-=+.+. .. .....+ .++ +|+. .. ....+.-++..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~-~ssP~v-------~~~-~v~v-~~--------~~g~l~ald~~ 178 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG--EA-LSRPVV-------SDG-LVLV-HT--------SNGMLQALNES 178 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC--ce-ecCCEE-------ECC-EEEE-EC--------CCCEEEEEEcc
Confidence 46677666556678889999987544211111 00 000111 011 2222 11 12356777877
Q ss_pred CC--cEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCc--eeee-eCCCCccccC--
Q 036391 173 IN--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAK--EFYQ-LPLPDSVNVS-- 245 (389)
Q Consensus 173 ~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e--~~~~-i~~P~~~~~~-- 245 (389)
++ .|+.-...|. ........++..+|.+|+.... ..+.++|..+. .|+. +..|......
T Consensus 179 tG~~~W~~~~~~~~----------~~~~~~~sP~v~~~~v~~~~~~----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 179 DGAVKWTVNLDVPS----------LTLRGESAPATAFGGAIVGGDN----GRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred CCCEeeeecCCCCc----------ccccCCCCCEEECCEEEEEcCC----CEEEEEEccCChhhheeccccCCCccchhc
Confidence 76 5887543331 0111234567788888875433 57899999875 4653 2333221100
Q ss_pred CCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEE
Q 036391 246 YANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLV 325 (389)
Q Consensus 246 ~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~ 325 (389)
...........+|.|++..... . +..++-...+..|.... .. ...| .+ +++.|++...+++++
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g--~--l~ald~~tG~~~W~~~~----~~------~~~~-~~--~~~~vy~~~~~g~l~ 307 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNG--N--LVALDLRSGQIVWKREY----GS------VNDF-AV--DGGRIYLVDQNDRVY 307 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCC--e--EEEEECCCCCEEEeecC----CC------ccCc-EE--ECCEEEEEcCCCeEE
Confidence 0000112345578877765432 2 34444322345686531 11 0122 22 356788877777899
Q ss_pred EEeCCCCcEEE
Q 036391 326 WFDLETNSLRT 336 (389)
Q Consensus 326 ~yd~~~~~~~~ 336 (389)
++|.++++..+
T Consensus 308 ald~~tG~~~W 318 (394)
T PRK11138 308 ALDTRGGVELW 318 (394)
T ss_pred EEECCCCcEEE
Confidence 99999887543
No 52
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=87.50 E-value=1.1 Score=28.33 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=24.5
Q ss_pred eeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCC
Q 036391 146 YKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 146 ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
=|++.+..............+++|+.++++|+.+..++
T Consensus 12 ~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 12 GKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 35555544311222335678999999999999987553
No 53
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=86.20 E-value=32 Score=32.90 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCC
Q 036391 219 TRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTR 298 (389)
Q Consensus 219 ~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 298 (389)
....+.+||+.+.+...+..|.... ...++..-+.-+|...++.+. ...+.+-..+ +..|..-..|+-
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e--~~~~e~FeVShd~~fia~~G~-~G~I~lLhak----T~eli~s~KieG----- 345 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVE--EKSMERFEVSHDSNFIAIAGN-NGHIHLLHAK----TKELITSFKIEG----- 345 (514)
T ss_pred cceEEEEeeccccccccccCCCCcc--cchhheeEecCCCCeEEEccc-CceEEeehhh----hhhhhheeeecc-----
Confidence 3468999999999999998887664 122222222223333333222 1244433333 234544444442
Q ss_pred CcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEEEEEecCCC
Q 036391 299 SFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGL 344 (389)
Q Consensus 299 ~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~v~~~~~g~ 344 (389)
...-+++..+|..|+.....+.++.+|++.+.......+ .|.
T Consensus 346 ---~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~ 387 (514)
T KOG2055|consen 346 ---VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGS 387 (514)
T ss_pred ---EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCc
Confidence 245677778898888876677899999999977665443 443
No 54
>PLN02772 guanylate kinase
Probab=86.18 E-value=5.6 Score=37.65 Aligned_cols=75 Identities=8% Similarity=0.057 Sum_probs=52.6
Q ss_pred ccCceeeECCeEEEEccCCC---CCcEEEEEECCCceeeee----CCCCccccCCCceEEEEEEeCCeEEEEEecCCCeE
Q 036391 199 RKGYGVLAGGALHWVSPKSS---TRSVIMAFNLVAKEFYQL----PLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYV 271 (389)
Q Consensus 199 ~~~~~v~~~G~lywl~~~~~---~~~~il~fD~~~e~~~~i----~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l 271 (389)
....+|.+++++|.+++... ....+.+||..+.+|..- ..|.... + +-.+..-+++|.++.......=
T Consensus 26 ~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~----G-hSa~v~~~~rilv~~~~~~~~~ 100 (398)
T PLN02772 26 NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK----G-YSAVVLNKDRILVIKKGSAPDD 100 (398)
T ss_pred CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC----c-ceEEEECCceEEEEeCCCCCcc
Confidence 45678999999999987622 235899999999999873 2343332 2 2233444889999886655567
Q ss_pred EEEEEee
Q 036391 272 DMWMMKE 278 (389)
Q Consensus 272 ~iW~l~~ 278 (389)
+||.|+-
T Consensus 101 ~~w~l~~ 107 (398)
T PLN02772 101 SIWFLEV 107 (398)
T ss_pred ceEEEEc
Confidence 8999974
No 55
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.79 E-value=9.5 Score=34.04 Aligned_cols=123 Identities=15% Similarity=0.285 Sum_probs=71.3
Q ss_pred EEeeecceEEEee-CCceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEE
Q 036391 89 VLGSCNGLIALCN-SVQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVE 167 (389)
Q Consensus 89 ~~~s~~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~ 167 (389)
+++.-+|-|-... ..+.+.-.||.++.-.++|++.. .+.... .+..|+. .-+++... ..-.+.
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~---~~~gsR--riwsdpi----g~~wittw-------g~g~l~ 257 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNA---LKAGSR--RIWSDPI----GRAWITTW-------GTGSLH 257 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCc---cccccc--ccccCcc----CcEEEecc-------CCceee
Confidence 4444455555443 23456778999998888888763 111111 1222321 12333321 334678
Q ss_pred EEEcCCCcEEEcccCCcccccccccccccccccCceeeECC-eEEEEccCCCCCcEEEEEECCCceeeeeCCCCcc
Q 036391 168 VYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSV 242 (389)
Q Consensus 168 Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 242 (389)
-|+..+.+|++.. +|. .. ....+.+++. -.-|+..- ....|..||+++++|+++++|...
T Consensus 258 rfdPs~~sW~eyp-LPg----------s~--arpys~rVD~~grVW~sea--~agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 258 RFDPSVTSWIEYP-LPG----------SK--ARPYSMRVDRHGRVWLSEA--DAGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred EeCcccccceeee-CCC----------CC--CCcceeeeccCCcEEeecc--ccCceeecCcccceEEEecCCCCC
Confidence 8999999999773 331 11 1223444443 23466433 346899999999999999998654
No 56
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=85.69 E-value=20 Score=31.09 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=62.6
Q ss_pred eECCeEEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEe--CC--eEEEEEec----CCCeEEEEEE
Q 036391 205 LAGGALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSL--EG--CLCVFCFY----NLVYVDMWMM 276 (389)
Q Consensus 205 ~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~--~G--~L~~~~~~----~~~~l~iW~l 276 (389)
.+||-+ ++... ..+...|+.|.++..+|.|.............++-. .+ ++..+... ....++|..+
T Consensus 3 sCnGLl-c~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~ 77 (230)
T TIGR01640 3 PCDGLI-CFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTL 77 (230)
T ss_pred ccceEE-EEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEe
Confidence 467877 44322 479999999999999987654210001101112211 11 12111111 1225666666
Q ss_pred eeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCc-----EEEEEeCCCCcEEE-EEE
Q 036391 277 KEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE-----KLVWFDLETNSLRT-VKI 339 (389)
Q Consensus 277 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~-----~l~~yd~~~~~~~~-v~~ 339 (389)
.. ++|..+.... .... .... ++.-||.+.++..... .++.||+++.+++. +..
T Consensus 78 ~~----~~Wr~~~~~~--~~~~---~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~ 136 (230)
T TIGR01640 78 GS----NSWRTIECSP--PHHP---LKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPL 136 (230)
T ss_pred CC----CCccccccCC--CCcc---ccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeec
Confidence 63 4798765211 1111 1111 3334665555553221 69999999999995 654
No 57
>smart00612 Kelch Kelch domain.
Probab=84.85 E-value=2.5 Score=25.85 Aligned_cols=21 Identities=10% Similarity=0.362 Sum_probs=16.6
Q ss_pred cEEEEEECCCceeeee-CCCCc
Q 036391 221 SVIMAFNLVAKEFYQL-PLPDS 241 (389)
Q Consensus 221 ~~il~fD~~~e~~~~i-~~P~~ 241 (389)
..+.+||+.+++|..+ ++|..
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCc
Confidence 5689999999999987 44443
No 58
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.77 E-value=33 Score=31.81 Aligned_cols=134 Identities=18% Similarity=0.209 Sum_probs=71.9
Q ss_pred ceeEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCeEEEEccC------CCCCcEEEEEECCCceeee
Q 036391 162 VEVEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK------SSTRSVIMAFNLVAKEFYQ 235 (389)
Q Consensus 162 ~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~------~~~~~~il~fD~~~e~~~~ 235 (389)
....+-+|+..++.|+.....| +.....+++...|..-++... .+..-...-|.-...+|..
T Consensus 194 ~n~ev~sy~p~~n~W~~~G~~p------------f~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 194 FNKEVLSYDPSTNQWRNLGENP------------FYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred ccccccccccccchhhhcCcCc------------ccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence 3456778999999999998777 222333444444443333321 2222345556666888988
Q ss_pred e-CCCCccccCCCce-EEEEEEeCCeEEEEEec---------------CCC------eEEEEEEeeCCCCCCeEEEEEEc
Q 036391 236 L-PLPDSVNVSYANV-HVDVGSLEGCLCVFCFY---------------NLV------YVDMWMMKEHAVKESWTKLISVQ 292 (389)
Q Consensus 236 i-~~P~~~~~~~~~~-~~~l~~~~G~L~~~~~~---------------~~~------~l~iW~l~~~~~~~~W~~~~~i~ 292 (389)
+ ++|.....+.+.. ...-+..+|.+.+.... .+. .-+||.+++ .+|..+..++
T Consensus 262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp 337 (381)
T COG3055 262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELP 337 (381)
T ss_pred ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccC
Confidence 7 6666554211111 12334455665554321 011 346777773 5798887766
Q ss_pred CCCCCCCcceeeeEEEEeCCCEEEEE
Q 036391 293 EPTPTRSFLFLRPLGYSRNGVKLLLE 318 (389)
Q Consensus 293 ~~~~~~~~~~~~p~~~~~~g~~i~l~ 318 (389)
.. ...-+.+.-+.+++++.
T Consensus 338 ~~-------l~YG~s~~~nn~vl~IG 356 (381)
T COG3055 338 QG-------LAYGVSLSYNNKVLLIG 356 (381)
T ss_pred CC-------ccceEEEecCCcEEEEc
Confidence 52 12334444344555554
No 59
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=84.56 E-value=29 Score=30.88 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=62.5
Q ss_pred CCeEEEEccCCCCCcEEEEEECCCcee-eeeCCCCccccCCCceEEEEE-EeCCeEEEEEecCCCeEEEEEEeeCCCCCC
Q 036391 207 GGALHWVSPKSSTRSVIMAFNLVAKEF-YQLPLPDSVNVSYANVHVDVG-SLEGCLCVFCFYNLVYVDMWMMKEHAVKES 284 (389)
Q Consensus 207 ~G~lywl~~~~~~~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~ 284 (389)
+|...+++.. ....|..||+.+.+. ..+................+. .-+|+..++.......+.+|-++.
T Consensus 167 dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~------ 238 (300)
T TIGR03866 167 DGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT------ 238 (300)
T ss_pred CCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC------
Confidence 5554444332 235688899987654 333322110000000011222 235665444443344688886543
Q ss_pred eEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEE-cCcEEEEEeCCCCcE-EEEEE
Q 036391 285 WTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDLETNSL-RTVKI 339 (389)
Q Consensus 285 W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~-~~~~l~~yd~~~~~~-~~v~~ 339 (389)
|.....+.... ....++++++|+.|+... .++.+.+||+++.+. +.+.+
T Consensus 239 ~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 239 YEVLDYLLVGQ------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred CcEEEEEEeCC------CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 44443332221 134567888888877653 356799999999884 66665
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.37 E-value=9.2 Score=35.32 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=71.5
Q ss_pred eeEEEEEEcCCCcEEEccc-CCcccccccccccccccccCceeeECC-eEEEEccC------------------------
Q 036391 163 EVEVEVYSLKINSWRRISN-LPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPK------------------------ 216 (389)
Q Consensus 163 ~~~~~Vyss~~~~W~~~~~-~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~------------------------ 216 (389)
...++.|++.+++|..++. .|. .....+++..+| .+|.+++-
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~------------gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~ 179 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPT------------GLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDK 179 (381)
T ss_pred eeeeEEecCCCChhheecccccc------------ccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHH
Confidence 3467899999999998874 331 123344555555 67766532
Q ss_pred ------------CCCCcEEEEEECCCceeeee-CCCCccccCCCceEEEEEEeCCeEEEEEecC---CCeEEEEEEeeCC
Q 036391 217 ------------SSTRSVIMAFNLVAKEFYQL-PLPDSVNVSYANVHVDVGSLEGCLCVFCFYN---LVYVDMWMMKEHA 280 (389)
Q Consensus 217 ------------~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~l~iW~l~~~~ 280 (389)
......+++||+.+++|+.. ..|-... . ...++..+++|.++...- -+...+|+.+-.+
T Consensus 180 i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~---a--Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~ 254 (381)
T COG3055 180 IIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGN---A--GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGG 254 (381)
T ss_pred HHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCc---c--CcceeecCCeEEEEcceecCCccccceeEEEecc
Confidence 01224699999999999998 4665543 1 123444566788877642 2356677766544
Q ss_pred CCCCeEEEEEEcC
Q 036391 281 VKESWTKLISVQE 293 (389)
Q Consensus 281 ~~~~W~~~~~i~~ 293 (389)
+...|.++...+.
T Consensus 255 ~~~~w~~l~~lp~ 267 (381)
T COG3055 255 DNLKWLKLSDLPA 267 (381)
T ss_pred CceeeeeccCCCC
Confidence 5678988865443
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.28 E-value=37 Score=31.97 Aligned_cols=100 Identities=14% Similarity=0.065 Sum_probs=53.0
Q ss_pred cceEEEeeCCceEEEEcCCcccccc---cCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEE
Q 036391 94 NGLIALCNSVQELALFNPSTRKLKT---LPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYS 170 (389)
Q Consensus 94 ~GLl~l~~~~~~~~V~NP~T~~~~~---LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vys 170 (389)
+|.|.+......++.+|+.|++... ++.... .. ...+ ++ +|+ +.. ....+..++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~------~~----p~v~---~~-~v~-v~~--------~~g~l~ald 121 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS------GG----VGAD---GG-LVF-VGT--------EKGEVIALD 121 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc------cc----eEEc---CC-EEE-EEc--------CCCEEEEEE
Confidence 5666666555678888999887543 222110 00 0111 11 222 211 123566677
Q ss_pred cCCC--cEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCc--eeee
Q 036391 171 LKIN--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAK--EFYQ 235 (389)
Q Consensus 171 s~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e--~~~~ 235 (389)
..++ .|+....-+ ....++..+|.+|.... ...+.++|..+. .|+.
T Consensus 122 ~~tG~~~W~~~~~~~---------------~~~~p~v~~~~v~v~~~----~g~l~a~d~~tG~~~W~~ 171 (377)
T TIGR03300 122 AEDGKELWRAKLSSE---------------VLSPPLVANGLVVVRTN----DGRLTALDAATGERLWTY 171 (377)
T ss_pred CCCCcEeeeeccCce---------------eecCCEEECCEEEEECC----CCeEEEEEcCCCceeeEE
Confidence 6665 587542211 12345667888887543 357999999765 4543
No 62
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=83.52 E-value=32 Score=30.58 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=78.2
Q ss_pred ccCceeeECCeEEEEccCCCCCcEEEEEECCCceee-eeCCCCccccC------CCceEEEEEEeCCeEEEEEecCC--C
Q 036391 199 RKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFY-QLPLPDSVNVS------YANVHVDVGSLEGCLCVFCFYNL--V 269 (389)
Q Consensus 199 ~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~------~~~~~~~l~~~~G~L~~~~~~~~--~ 269 (389)
.....|..||.+|.-.. ....|+.||+.++.-. ...+|...... ...-.+.+++-+..|-++..... .
T Consensus 70 ~GtG~vVYngslYY~~~---~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g 146 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKY---NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG 146 (250)
T ss_pred ccCCeEEECCcEEEEec---CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC
Confidence 34456888999999754 3468999999999988 77888765320 11224688888888888865432 2
Q ss_pred eEEEEEEeeCC--CCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEE-EcC---c-EEEEEeCCCCcEEEEEEe
Q 036391 270 YVDMWMMKEHA--VKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLE-VRR---E-KLVWFDLETNSLRTVKID 340 (389)
Q Consensus 270 ~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~-~~~---~-~l~~yd~~~~~~~~v~~~ 340 (389)
.+.|=.|+... ..+.|..-. .-.. ... +|--.| +++.. ... . --++||+.+++-+.+.+.
T Consensus 147 ~ivvskld~~tL~v~~tw~T~~--~k~~------~~n--aFmvCG-vLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 147 NIVVSKLDPETLSVEQTWNTSY--PKRS------AGN--AFMVCG-VLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred cEEEEeeCcccCceEEEEEecc--Cchh------hcc--eeeEee-EEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 57777777532 335565321 1110 111 222224 33332 221 2 367899999988877663
No 63
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=83.42 E-value=2.1 Score=26.97 Aligned_cols=22 Identities=18% Similarity=0.667 Sum_probs=14.4
Q ss_pred ceeEEEEEEcCCCcEEEcccCC
Q 036391 162 VEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 162 ~~~~~~Vyss~~~~W~~~~~~p 183 (389)
....+++|+..+++|+.++.+|
T Consensus 27 ~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp E---EEEEETTTTEEEE--SS-
T ss_pred ccCCEEEEECCCCEEEECCCCC
Confidence 4457889999999999997766
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.39 E-value=0.62 Score=43.75 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHHhcCCccchhhhcccchhhhhhhCCHH
Q 036391 3 KKIPLDIIADIFCRQPVKSLLRFRCVSKTCCSLIDSQD 40 (389)
Q Consensus 3 ~~LP~Dll~~IL~rLP~ksl~r~r~VcK~W~~li~s~~ 40 (389)
-.||.+++..||+-|..|++.|++.+|+.|+-+..|..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 47999999999999999999999999999998876643
No 65
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=83.33 E-value=43 Score=31.90 Aligned_cols=142 Identities=14% Similarity=0.068 Sum_probs=68.7
Q ss_pred EEEEEEcCCC--cEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCce--eeee-CCC
Q 036391 165 EVEVYSLKIN--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKE--FYQL-PLP 239 (389)
Q Consensus 165 ~~~Vyss~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~--~~~i-~~P 239 (389)
.+..++.+++ .|+.-..-+ ....++..+|.+|..... ..+.+||..+.+ |+.- ..|
T Consensus 131 ~l~ald~~tG~~~W~~~~~~~---------------~~ssP~v~~~~v~v~~~~----g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVAGE---------------ALSRPVVSDGLVLVHTSN----GMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred EEEEEECCCCCCcccccCCCc---------------eecCCEEECCEEEEECCC----CEEEEEEccCCCEeeeecCCCC
Confidence 4566776665 687543211 123467788999975433 579999997654 5542 223
Q ss_pred CccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCC--CCc-ceeeeEEEEeCCCEEE
Q 036391 240 DSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPT--RSF-LFLRPLGYSRNGVKLL 316 (389)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~--~~~-~~~~p~~~~~~g~~i~ 316 (389)
.... .. .......+|.+++..... .+ ..++-...+..|......+..... ... -...|+.. ++.++
T Consensus 192 ~~~~--~~--~~sP~v~~~~v~~~~~~g--~v--~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~---~~~vy 260 (394)
T PRK11138 192 SLTL--RG--ESAPATAFGGAIVGGDNG--RV--SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV---GGVVY 260 (394)
T ss_pred cccc--cC--CCCCEEECCEEEEEcCCC--EE--EEEEccCChhhheeccccCCCccchhcccccCCCcEEE---CCEEE
Confidence 2110 00 011223355544433221 22 222211123456532111100000 000 01345433 45677
Q ss_pred EEEcCcEEEEEeCCCCcEEE
Q 036391 317 LEVRREKLVWFDLETNSLRT 336 (389)
Q Consensus 317 l~~~~~~l~~yd~~~~~~~~ 336 (389)
+...++.++++|+++++..+
T Consensus 261 ~~~~~g~l~ald~~tG~~~W 280 (394)
T PRK11138 261 ALAYNGNLVALDLRSGQIVW 280 (394)
T ss_pred EEEcCCeEEEEECCCCCEEE
Confidence 76666789999999987544
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=83.10 E-value=6.1 Score=37.25 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=45.3
Q ss_pred CCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCc-EE
Q 036391 257 EGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS-LR 335 (389)
Q Consensus 257 ~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~-~~ 335 (389)
-+.|.+..+..+..+.||.+++.. -+..++. .-....-+.|.+||..+....++..+..||++.-+ ++
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~~------~~a~Fpg-----ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQT------NVAKFPG-----HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCcc------ccccCCC-----CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence 444445555556699999999732 1222332 22246778999999766666666679999998633 44
Q ss_pred EEEE
Q 036391 336 TVKI 339 (389)
Q Consensus 336 ~v~~ 339 (389)
.+.+
T Consensus 426 t~~l 429 (506)
T KOG0289|consen 426 TIQL 429 (506)
T ss_pred eeec
Confidence 4444
No 67
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=82.97 E-value=41 Score=31.42 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=72.4
Q ss_pred CCeEEEEccCCCCCcEEEEEECCCce--eee---eCCCCccccCCCceEEEEEEe-CCeEEEEEecCCCeEEEEEEeeCC
Q 036391 207 GGALHWVSPKSSTRSVIMAFNLVAKE--FYQ---LPLPDSVNVSYANVHVDVGSL-EGCLCVFCFYNLVYVDMWMMKEHA 280 (389)
Q Consensus 207 ~G~lywl~~~~~~~~~il~fD~~~e~--~~~---i~~P~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~l~iW~l~~~~ 280 (389)
+|...|.... ..+.|..|++..+. ... +.+|.... . ..++.. +|+..++.......+.++.+...
T Consensus 154 dg~~v~v~dl--G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G----P--Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~- 224 (345)
T PF10282_consen 154 DGRFVYVPDL--GADRVYVYDIDDDTGKLTPVDSIKVPPGSG----P--RHLAFSPDGKYAYVVNELSNTVSVFDYDPS- 224 (345)
T ss_dssp TSSEEEEEET--TTTEEEEEEE-TTS-TEEEEEEEECSTTSS----E--EEEEE-TTSSEEEEEETTTTEEEEEEEETT-
T ss_pred CCCEEEEEec--CCCEEEEEEEeCCCceEEEeeccccccCCC----C--cEEEEcCCcCEEEEecCCCCcEEEEeeccc-
Confidence 4665555443 34678888887655 433 45665432 1 223333 66665555555558999988842
Q ss_pred CCCCeEEEEEEcCCCCCCCc-ceeeeEEEEeCCCEEEEEEc-CcEEEEEeC--CCCcEEEEEE
Q 036391 281 VKESWTKLISVQEPTPTRSF-LFLRPLGYSRNGVKLLLEVR-REKLVWFDL--ETNSLRTVKI 339 (389)
Q Consensus 281 ~~~~W~~~~~i~~~~~~~~~-~~~~p~~~~~~g~~i~l~~~-~~~l~~yd~--~~~~~~~v~~ 339 (389)
...++.+..+......... ....-+.+++||+.++.... ...+.+|++ ++++++.+..
T Consensus 225 -~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 225 -DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp -TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred -CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 3467777777753211111 13455788899998888754 446888886 5678888733
No 68
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=82.70 E-value=3.2 Score=26.19 Aligned_cols=23 Identities=39% Similarity=0.723 Sum_probs=19.3
Q ss_pred CceeEEEEEEcCCCcEEEcccCC
Q 036391 161 DVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 161 ~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
.....+.+|++.+++|+.++.+|
T Consensus 16 ~~~nd~~~~~~~~~~W~~~~~~P 38 (49)
T PF13415_consen 16 TRLNDVWVFDLDTNTWTRIGDLP 38 (49)
T ss_pred CEecCEEEEECCCCEEEECCCCC
Confidence 34567899999999999997777
No 69
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.18 E-value=40 Score=32.90 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=77.4
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCC--cEEEccc
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKIN--SWRRISN 181 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~--~W~~~~~ 181 (389)
+.+.|+|-+|++|. +|.-.. +.+....++||.+| .=++++++..... ..+.=+.|.+..- .|+++..
T Consensus 57 DELHvYNTatnqWf-~PavrG--DiPpgcAA~Gfvcd----GtrilvFGGMvEY----GkYsNdLYELQasRWeWkrlkp 125 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRG--DIPPGCAAFGFVCD----GTRILVFGGMVEY----GKYSNDLYELQASRWEWKRLKP 125 (830)
T ss_pred hhhhhhccccceee-cchhcC--CCCCchhhcceEec----CceEEEEccEeee----ccccchHHHhhhhhhhHhhcCC
Confidence 47899999999997 454433 44333344444433 2345554432211 2334456777664 5666532
Q ss_pred -CCcccccccccccccccccCceeeECCeEEEEccC---C----------CCCcEEEEEECCCce--eeee----CCCCc
Q 036391 182 -LPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPK---S----------STRSVIMAFNLVAKE--FYQL----PLPDS 241 (389)
Q Consensus 182 -~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~---~----------~~~~~il~fD~~~e~--~~~i----~~P~~ 241 (389)
.|.... ..-++..++=+.+..+.|.+++- . -....++-+-..... |... .+|..
T Consensus 126 ~~p~nG~------pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~p 199 (830)
T KOG4152|consen 126 KTPKNGP------PPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPP 199 (830)
T ss_pred CCCCCCC------CCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCC
Confidence 110000 00111223334566788887643 0 111234444433432 4431 34544
Q ss_pred cccCCCceEEEEEEeCC---eEEEEEe-cCCCeEEEEEEeeCCCCCCeEEEEE
Q 036391 242 VNVSYANVHVDVGSLEG---CLCVFCF-YNLVYVDMWMMKEHAVKESWTKLIS 290 (389)
Q Consensus 242 ~~~~~~~~~~~l~~~~G---~L~~~~~-~~~~~l~iW~l~~~~~~~~W~~~~~ 290 (389)
.. .+. ...-++.|. ++++... ++.+--++|.|+- +.-.|.+...
T Consensus 200 RE--SHT-AViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl--~Tl~W~kp~~ 247 (830)
T KOG4152|consen 200 RE--SHT-AVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDL--DTLTWNKPSL 247 (830)
T ss_pred cc--cce-eEEEEeccCCcceEEEEcccccccccceeEEec--ceeecccccc
Confidence 43 111 111223332 3333332 3333457999995 3568987643
No 70
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=80.65 E-value=51 Score=31.02 Aligned_cols=192 Identities=14% Similarity=0.112 Sum_probs=95.7
Q ss_pred ecceEEEeeCCceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcC
Q 036391 93 CNGLIALCNSVQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLK 172 (389)
Q Consensus 93 ~~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~ 172 (389)
.+|.+.+...+..++.+|+.|++.+.--.... .. ..... + .++ +|+... ....+..++..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~~-~~~p~--v-----~~~-~v~v~~---------~~g~l~a~d~~ 163 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--EV-LSPPL--V-----ANG-LVVVRT---------NDGRLTALDAA 163 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc--ee-ecCCE--E-----ECC-EEEEEC---------CCCeEEEEEcC
Confidence 46777666556778888998887543211111 00 00000 0 112 233221 12346677777
Q ss_pred CC--cEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCc--eeee-eCCCCccccCC-
Q 036391 173 IN--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAK--EFYQ-LPLPDSVNVSY- 246 (389)
Q Consensus 173 ~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e--~~~~-i~~P~~~~~~~- 246 (389)
++ .|+.....+. . .......++..+|.+|.-.. ...+.++|+.+. .|+. +..|.......
T Consensus 164 tG~~~W~~~~~~~~---------~-~~~~~~sp~~~~~~v~~~~~----~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 164 TGERLWTYSRVTPA---------L-TLRGSASPVIADGGVLVGFA----GGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCceeeEEccCCCc---------e-eecCCCCCEEECCEEEEECC----CCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 65 5876543221 0 01122456777888776432 257999999765 4543 33332110000
Q ss_pred -CceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEE
Q 036391 247 -ANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLV 325 (389)
Q Consensus 247 -~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~ 325 (389)
..........+|.+++..... .+..+.++. .+..|.... .. ...|. + .++.|++...++.++
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~g--~l~a~d~~t--G~~~W~~~~----~~------~~~p~-~--~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQG--RVAALDLRS--GRVLWKRDA----SS------YQGPA-V--DDNRLYVTDADGVVV 292 (377)
T ss_pred hhccCCccEEECCEEEEEEcCC--EEEEEECCC--CcEEEeecc----CC------ccCce-E--eCCEEEEECCCCeEE
Confidence 000112334577777665432 444444442 245675531 11 12232 2 356777776677899
Q ss_pred EEeCCCCcEE
Q 036391 326 WFDLETNSLR 335 (389)
Q Consensus 326 ~yd~~~~~~~ 335 (389)
++|..+++..
T Consensus 293 ~~d~~tG~~~ 302 (377)
T TIGR03300 293 ALDRRSGSEL 302 (377)
T ss_pred EEECCCCcEE
Confidence 9999888644
No 71
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=80.18 E-value=49 Score=30.47 Aligned_cols=138 Identities=8% Similarity=0.080 Sum_probs=71.8
Q ss_pred eEEEEEEcCC-CcEEEcccCCcccccccccccccccccCceeeE--CCe-EEEEccCCCCCcEEEEEECC-CceeeeeC-
Q 036391 164 VEVEVYSLKI-NSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA--GGA-LHWVSPKSSTRSVIMAFNLV-AKEFYQLP- 237 (389)
Q Consensus 164 ~~~~Vyss~~-~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~-lywl~~~~~~~~~il~fD~~-~e~~~~i~- 237 (389)
..+.+|+..+ +.++.+...+. . .....+.+ +|. +|.... ....|.+|++. +..+..+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~------------~-~~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~~g~l~~~~~ 75 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDV------------P-GQVQPMVISPDKRHLYVGVR---PEFRVLSYRIADDGALTFAAE 75 (330)
T ss_pred CCEEEEEECCCCceeeeeEEec------------C-CCCccEEECCCCCEEEEEEC---CCCcEEEEEECCCCceEEeee
Confidence 3567777753 57776654331 0 11112222 454 454322 23578888886 44555442
Q ss_pred CCCccccCCCceEEEEEEe-CCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEE
Q 036391 238 LPDSVNVSYANVHVDVGSL-EGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLL 316 (389)
Q Consensus 238 ~P~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~ 316 (389)
.|... .. ..++.. +|+..+++......+.+|.+++.+. ....+..+... ....-++++++|+.++
T Consensus 76 ~~~~~----~p--~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~--~~~~~~~~~~~------~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 76 SPLPG----SP--THISTDHQGRFLFSASYNANCVSVSPLDKDGI--PVAPIQIIEGL------EGCHSANIDPDNRTLW 141 (330)
T ss_pred ecCCC----Cc--eEEEECCCCCEEEEEEcCCCeEEEEEECCCCC--CCCceeeccCC------CcccEeEeCCCCCEEE
Confidence 22111 11 123333 6665555544455899999975432 11222222211 1133456778888887
Q ss_pred EEEc-CcEEEEEeCCC
Q 036391 317 LEVR-REKLVWFDLET 331 (389)
Q Consensus 317 l~~~-~~~l~~yd~~~ 331 (389)
.... .+.+.+||+++
T Consensus 142 v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 142 VPCLKEDRIRLFTLSD 157 (330)
T ss_pred EeeCCCCEEEEEEECC
Confidence 7654 46799999876
No 72
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.22 E-value=51 Score=32.93 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=65.0
Q ss_pred CceeeECCeEEEEccCCCCCcEEEEEECCC--ceeeee-CCCCcccc--CCCceEEEEEEeCCeEEEEEecCCCeEEEEE
Q 036391 201 GYGVLAGGALHWVSPKSSTRSVIMAFNLVA--KEFYQL-PLPDSVNV--SYANVHVDVGSLEGCLCVFCFYNLVYVDMWM 275 (389)
Q Consensus 201 ~~~v~~~G~lywl~~~~~~~~~il~fD~~~--e~~~~i-~~P~~~~~--~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~ 275 (389)
..++..+|.+|..+.. ..|.++|..+ +.|+.- ..|..... ........++..+|++++..... .+..
T Consensus 63 stPvv~~g~vyv~s~~----g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg----~l~A 134 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY----SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDA----RLVA 134 (527)
T ss_pred cCCEEECCEEEEECCC----CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCC----EEEE
Confidence 4578899999986443 4699999986 456652 33322110 00000112455677777654332 3556
Q ss_pred EeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc------CcEEEEEeCCCCcEEEE
Q 036391 276 MKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR------REKLVWFDLETNSLRTV 337 (389)
Q Consensus 276 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~------~~~l~~yd~~~~~~~~v 337 (389)
|+-...+..|.... .+... .......|+.. ++.|++... .+.++.||.+|++..+-
T Consensus 135 LDa~TGk~~W~~~~-~~~~~--~~~~tssP~v~---~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 135 LDAKTGKVVWSKKN-GDYKA--GYTITAAPLVV---KGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EECCCCCEEeeccc-ccccc--cccccCCcEEE---CCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 65432355675432 11110 00001234443 346666542 35799999999986654
No 73
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=77.78 E-value=47 Score=30.82 Aligned_cols=115 Identities=12% Similarity=0.159 Sum_probs=61.5
Q ss_pred CCCcEEEEEECCCceeeeeCCCCccc------cCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEE
Q 036391 218 STRSVIMAFNLVAKEFYQLPLPDSVN------VSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISV 291 (389)
Q Consensus 218 ~~~~~il~fD~~~e~~~~i~~P~~~~------~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i 291 (389)
+.......+|..+..| ...++.+-. .+++...+.-+.+.|++.+..... .-..|.+.+....-.|.+.|..
T Consensus 83 GgDD~AflW~~~~ge~-~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st--g~~~~~~~~e~~dieWl~WHp~ 159 (399)
T KOG0296|consen 83 GGDDLAFLWDISTGEF-AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST--GGEQWKLDQEVEDIEWLKWHPR 159 (399)
T ss_pred CCCceEEEEEccCCcc-eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc--CceEEEeecccCceEEEEeccc
Confidence 3445666777776662 234443321 123444455566677766665432 3445666532223456555532
Q ss_pred cCCCCCC----------------------CcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEE
Q 036391 292 QEPTPTR----------------------SFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 335 (389)
Q Consensus 292 ~~~~~~~----------------------~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~ 335 (389)
-.--+.+ ....+.--.+.++|+.++....++.+.++|++|+.-.
T Consensus 160 a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 160 AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee
Confidence 2110001 0011122234568999988877888999999998643
No 74
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=76.03 E-value=46 Score=32.73 Aligned_cols=118 Identities=11% Similarity=0.153 Sum_probs=61.9
Q ss_pred eecceEEEeeC-CceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEE
Q 036391 92 SCNGLIALCNS-VQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYS 170 (389)
Q Consensus 92 s~~GLl~l~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vys 170 (389)
..+|-++++.+ +.++.||||..++ .|=.... .+....+..-|.|.+++-.|+... ....+.+|+
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~K--llhsI~T----gHtaNIFsvKFvP~tnnriv~sgA---------gDk~i~lfd 123 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYK--LLHSIST----GHTANIFSVKFVPYTNNRIVLSGA---------GDKLIKLFD 123 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcc--eeeeeec----ccccceeEEeeeccCCCeEEEecc---------CcceEEEEe
Confidence 45777777764 4589999999444 3333332 124455667778887776665432 345788888
Q ss_pred cCCCcEEEccc-CCcccccccccccccccccCceeeECC-eEEEEccCCCCCcEEEEEECCC
Q 036391 171 LKINSWRRISN-LPRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIMAFNLVA 230 (389)
Q Consensus 171 s~~~~W~~~~~-~p~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~il~fD~~~ 230 (389)
...-+=+..+. +......|. .+......-++.-+| ..+|-+.. ...|.-+|+..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~---cht~rVKria~~p~~PhtfwsasE---DGtirQyDiRE 179 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWS---CHTDRVKRIATAPNGPHTFWSASE---DGTIRQYDIRE 179 (758)
T ss_pred cccccccccccCccchhhhhh---hhhhhhhheecCCCCCceEEEecC---CcceeeecccC
Confidence 76422111110 110000000 111111222334445 67787654 34688888765
No 75
>PRK04792 tolB translocation protein TolB; Provisional
Probab=75.53 E-value=83 Score=30.65 Aligned_cols=188 Identities=13% Similarity=0.088 Sum_probs=95.5
Q ss_pred CceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccC
Q 036391 103 VQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNL 182 (389)
Q Consensus 103 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~ 182 (389)
...++++|..|++...+...+. . .....+.|..+. ++..... .....+.+++..++..+.+...
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g------~--~~~~~wSPDG~~--La~~~~~------~g~~~Iy~~dl~tg~~~~lt~~ 304 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPG------I--NGAPRFSPDGKK--LALVLSK------DGQPEIYVVDIATKALTRITRH 304 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCC------C--cCCeeECCCCCE--EEEEEeC------CCCeEEEEEECCCCCeEECccC
Confidence 3479999999988766654331 0 012344544332 2222211 1234677788888888776532
Q ss_pred CcccccccccccccccccCceeeECCe-EEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEE
Q 036391 183 PRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLC 261 (389)
Q Consensus 183 p~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~ 261 (389)
.. ........-+|. +++.... .....|..+|+.+.+...+....... ..... .-+|+..
T Consensus 305 ~~-------------~~~~p~wSpDG~~I~f~s~~-~g~~~Iy~~dl~~g~~~~Lt~~g~~~-----~~~~~-SpDG~~l 364 (448)
T PRK04792 305 RA-------------IDTEPSWHPDGKSLIFTSER-GGKPQIYRVNLASGKVSRLTFEGEQN-----LGGSI-TPDGRSM 364 (448)
T ss_pred CC-------------CccceEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEEecCCCCC-----cCeeE-CCCCCEE
Confidence 20 001111123453 4443322 23357889999888777764322111 11122 2355444
Q ss_pred EEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC---cEEEEEeCCCCcEEEE
Q 036391 262 VFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 337 (389)
Q Consensus 262 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~---~~l~~yd~~~~~~~~v 337 (389)
++.........||+++-.+ .....+. .... ...| .+++||..|++.... ..++.+|.+.+..+.+
T Consensus 365 ~~~~~~~g~~~I~~~dl~~--g~~~~lt---~~~~-----d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLET--GAMQVLT---STRL-----DESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred EEEEecCCceEEEEEECCC--CCeEEcc---CCCC-----CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 3333333467899887422 2232221 1111 1233 567789888876432 2477788876655555
No 76
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=75.30 E-value=83 Score=30.51 Aligned_cols=149 Identities=10% Similarity=0.040 Sum_probs=76.1
Q ss_pred EEEEEEcCCCcEEEcc-cCCccccccccccc-ccccccCceeeECCeEEEEccCCCCCcEEEEEECCCceeeeeCCCCcc
Q 036391 165 EVEVYSLKINSWRRIS-NLPRFLRDFYDYLY-HSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSV 242 (389)
Q Consensus 165 ~~~Vyss~~~~W~~~~-~~p~~~~~~~~~~~-~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 242 (389)
.+.+|++.+++=+.++ .+|.....-...+. ... ....=..++|-.+-+.++ .....++....---++.-+..+
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~psk-yledfa~~~Gd~ia~VSR----GkaFi~~~~~~~~iqv~~~~~V 362 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSK-YLEDFAVVNGDYIALVSR----GKAFIMRPWDGYSIQVGKKGGV 362 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHH-hhhhhccCCCcEEEEEec----CcEEEECCCCCeeEEcCCCCce
Confidence 3567777777776665 33421110000000 000 011124577888877765 3455555544333333333332
Q ss_pred ccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCc
Q 036391 243 NVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE 322 (389)
Q Consensus 243 ~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~ 322 (389)
. +..+......+.+.... ...+.|.-.+.. ++.++... .....-+++.++|+.+++..+..
T Consensus 363 r------Y~r~~~~~e~~vigt~d-gD~l~iyd~~~~-------e~kr~e~~-----lg~I~av~vs~dGK~~vvaNdr~ 423 (668)
T COG4946 363 R------YRRIQVDPEGDVIGTND-GDKLGIYDKDGG-------EVKRIEKD-----LGNIEAVKVSPDGKKVVVANDRF 423 (668)
T ss_pred E------EEEEccCCcceEEeccC-CceEEEEecCCc-------eEEEeeCC-----ccceEEEEEcCCCcEEEEEcCce
Confidence 1 22344444433222222 226666554421 22333321 11245678888998888876667
Q ss_pred EEEEEeCCCCcEEEE
Q 036391 323 KLVWFDLETNSLRTV 337 (389)
Q Consensus 323 ~l~~yd~~~~~~~~v 337 (389)
.++++|.+++..+.+
T Consensus 424 el~vididngnv~~i 438 (668)
T COG4946 424 ELWVIDIDNGNVRLI 438 (668)
T ss_pred EEEEEEecCCCeeEe
Confidence 899999999998877
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=74.45 E-value=21 Score=32.23 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=42.5
Q ss_pred CCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEEEEE
Q 036391 268 LVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKI 339 (389)
Q Consensus 268 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~v~~ 339 (389)
+..+++|++++.|.... +....+.. ...-++..++|.+++....++.+-.||+.+++...|..
T Consensus 49 D~tVR~wevq~~g~~~~---ka~~~~~~------PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVP---KAQQSHDG------PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAA 111 (347)
T ss_pred CCceEEEEEecCCcccc---hhhhccCC------CeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeee
Confidence 44899999998542221 11111111 12234556789999998777889999999999998866
No 78
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=73.30 E-value=69 Score=28.66 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=70.3
Q ss_pred ECCeEEEEccCCCCCcEEEEEECCCceee-eeCCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCC
Q 036391 206 AGGALHWVSPKSSTRSVIMAFNLVAKEFY-QLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKES 284 (389)
Q Consensus 206 ~~G~lywl~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~ 284 (389)
-+|.+|=-++ ...+..|..+|+.+++.. ..++|.... .=.++..+++|+.+...+. ..-++-.+ .
T Consensus 54 ~~g~LyESTG-~yG~S~l~~~d~~tg~~~~~~~l~~~~F------gEGit~~~d~l~qLTWk~~-~~f~yd~~------t 119 (264)
T PF05096_consen 54 DDGTLYESTG-LYGQSSLRKVDLETGKVLQSVPLPPRYF------GEGITILGDKLYQLTWKEG-TGFVYDPN------T 119 (264)
T ss_dssp ETTEEEEEEC-STTEEEEEEEETTTSSEEEEEE-TTT--------EEEEEEETTEEEEEESSSS-EEEEEETT------T
T ss_pred CCCEEEEeCC-CCCcEEEEEEECCCCcEEEEEECCcccc------ceeEEEECCEEEEEEecCC-eEEEEccc------c
Confidence 4677776544 345678999999998765 578987653 2257888999999998765 33333322 3
Q ss_pred eEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCc-EEEEEEecCCC
Q 036391 285 WTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS-LRTVKIDTHGL 344 (389)
Q Consensus 285 W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~-~~~v~~~~~g~ 344 (389)
..++.++.... -.+-++ .+|+.+++...+.+|...|+++-+ .+.|.+...|.
T Consensus 120 l~~~~~~~y~~------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 120 LKKIGTFPYPG------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGR 172 (264)
T ss_dssp TEEEEEEE-SS------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred ceEEEEEecCC------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCE
Confidence 45555555432 123233 478888888777889999998844 44555532343
No 79
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.27 E-value=9.4 Score=21.37 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=19.8
Q ss_pred CCEEEEEEcCcEEEEEeCCCCcEEE
Q 036391 312 GVKLLLEVRREKLVWFDLETNSLRT 336 (389)
Q Consensus 312 g~~i~l~~~~~~l~~yd~~~~~~~~ 336 (389)
++.+++...++.++++|.++++..+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 3477777777889999999988664
No 80
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=72.89 E-value=92 Score=32.03 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=68.1
Q ss_pred CceeeECCeEEEEccC--------CCCCcEEEEEECCCceeeeeCCCCcccc---CCCceEEEEEEe---CCeEEEEEec
Q 036391 201 GYGVLAGGALHWVSPK--------SSTRSVIMAFNLVAKEFYQLPLPDSVNV---SYANVHVDVGSL---EGCLCVFCFY 266 (389)
Q Consensus 201 ~~~v~~~G~lywl~~~--------~~~~~~il~fD~~~e~~~~i~~P~~~~~---~~~~~~~~l~~~---~G~L~~~~~~ 266 (389)
...++..++.||+... -.....+++-+++++.|...++|..... +.....+.-+.. ++-|.+-+ .
T Consensus 249 ~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~-~ 327 (893)
T KOG0291|consen 249 HKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC-S 327 (893)
T ss_pred cceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC-C
Confidence 3457788888888632 1223578899999999999999975421 111112222222 33343333 2
Q ss_pred CCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCC
Q 036391 267 NLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETN 332 (389)
Q Consensus 267 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~ 332 (389)
+-..+-||..+. ++.+++ .... .....-+...+||..|.-+..++++-+||..++
T Consensus 328 klgQLlVweWqs----EsYVlK----QQgH---~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 328 KLGQLLVWEWQS----ESYVLK----QQGH---SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred ccceEEEEEeec----cceeee----cccc---ccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 334788998874 333332 2111 112344666677776666666667777777664
No 81
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=72.36 E-value=80 Score=29.02 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=64.7
Q ss_pred ECCeEEEEccCCCCCcEEEEEECC--Cceeee---e-CCCCccccCCCceEEEEE-EeCCeEEEEEecCCCeEEEEEEee
Q 036391 206 AGGALHWVSPKSSTRSVIMAFNLV--AKEFYQ---L-PLPDSVNVSYANVHVDVG-SLEGCLCVFCFYNLVYVDMWMMKE 278 (389)
Q Consensus 206 ~~G~lywl~~~~~~~~~il~fD~~--~e~~~~---i-~~P~~~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~l~iW~l~~ 278 (389)
=+|...+.+.. ....|.+||+. +.++.. + .+|.... ...+...+. .-+|+..++.......+.+|.++.
T Consensus 184 pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 184 PNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFS--DTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCC--CCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 34554444432 23578888876 334433 2 2343321 111111122 236665444444445899999876
Q ss_pred CCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc-CcEEEEEe--CCCCcEEEE
Q 036391 279 HAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVWFD--LETNSLRTV 337 (389)
Q Consensus 279 ~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~-~~~l~~yd--~~~~~~~~v 337 (389)
.+ ..+..+..+.... ..+-+.++++|+.++.... ++.+.+|+ ..++.++.+
T Consensus 260 ~~--~~~~~~~~~~~~~------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 260 DG--SVLSFEGHQPTET------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred CC--CeEEEeEEEeccc------cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence 33 3566666665431 1234677789988887653 44566764 467777776
No 82
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=72.16 E-value=70 Score=28.30 Aligned_cols=188 Identities=10% Similarity=0.057 Sum_probs=87.2
Q ss_pred CCceEEEEcCCcccccc-cCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcc
Q 036391 102 SVQELALFNPSTRKLKT-LPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRIS 180 (389)
Q Consensus 102 ~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~ 180 (389)
..+.+.++|+.+++... ++.... ...+.+++..+ +++.... ....+.+|+.+++.= +.
T Consensus 51 ~~~~v~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~g~--~l~~~~~--------~~~~l~~~d~~~~~~--~~ 109 (300)
T TIGR03866 51 DSDTIQVIDLATGEVIGTLPSGPD---------PELFALHPNGK--ILYIANE--------DDNLVTVIDIETRKV--LA 109 (300)
T ss_pred CCCeEEEEECCCCcEEEeccCCCC---------ccEEEECCCCC--EEEEEcC--------CCCeEEEEECCCCeE--Ee
Confidence 45678999999877644 332211 12345555433 2222110 123677888876531 11
Q ss_pred cCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCceeee-eCCCCccccCCCceEEEEEEeCCe
Q 036391 181 NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQ-LPLPDSVNVSYANVHVDVGSLEGC 259 (389)
Q Consensus 181 ~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~-i~~P~~~~~~~~~~~~~l~~~~G~ 259 (389)
..+ .... ...-.+.-+|.+.+.+.. ....+..+|..+..... +..+... .... ..-+|+
T Consensus 110 ~~~----------~~~~-~~~~~~~~dg~~l~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~-~s~dg~ 169 (300)
T TIGR03866 110 EIP----------VGVE-PEGMAVSPDGKIVVNTSE--TTNMAHFIDTKTYEIVDNVLVDQRP------RFAE-FTADGK 169 (300)
T ss_pred Eee----------CCCC-cceEEECCCCCEEEEEec--CCCeEEEEeCCCCeEEEEEEcCCCc------cEEE-ECCCCC
Confidence 111 0000 011112235665554432 12345667877654322 2221111 0111 223565
Q ss_pred EEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCC--CCCCCcceeeeEEEEeCCCEEEEEEc-CcEEEEEeCCCCcEEE
Q 036391 260 LCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEP--TPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVWFDLETNSLRT 336 (389)
Q Consensus 260 L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~--~~~~~~~~~~p~~~~~~g~~i~l~~~-~~~l~~yd~~~~~~~~ 336 (389)
..++.......+.+|-++.. ..+..+... ..........-+.++++|+.+++... ...+..||+++.+...
T Consensus 170 ~l~~~~~~~~~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDVATR------KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred EEEEEcCCCCEEEEEEcCcc------eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 54444433447889987742 122222211 10000001123566788888776543 4569999998877654
No 83
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=71.86 E-value=27 Score=33.20 Aligned_cols=138 Identities=21% Similarity=0.238 Sum_probs=77.6
Q ss_pred eeecceEEEeeC-----CceEEEEcCCcccccccCCCCC-CCCCCC-ceeEEEEeeecCCCCeeEEEEEEEeCCCCCCce
Q 036391 91 GSCNGLIALCNS-----VQELALFNPSTRKLKTLPLPPC-FVGFPS-AFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVE 163 (389)
Q Consensus 91 ~s~~GLl~l~~~-----~~~~~V~NP~T~~~~~LP~~~~-~~~~~~-~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~ 163 (389)
+--+.||++... ..+++|+|..|++..+|..... ....|. ....+.=||--.++++|++-... ..
T Consensus 235 A~vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~~--------~~ 306 (448)
T PF12458_consen 235 ARVGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTDM--------DG 306 (448)
T ss_pred eecCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecccC--------CC
Confidence 344668888752 3489999999999999876652 001111 22333345666677777764321 00
Q ss_pred eEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCceeeeeCCCCccc
Q 036391 164 VEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVN 243 (389)
Q Consensus 164 ~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~ 243 (389)
.+.+ |.+.+ | .=...+|.+-........++.||+...+ +.-|..+.
T Consensus 307 l~F~---------r~vrS-P---------------------NGEDvLYvF~~~~~g~~~Ll~YN~I~k~---v~tPi~ch 352 (448)
T PF12458_consen 307 LEFE---------RKVRS-P---------------------NGEDVLYVFYAREEGRYLLLPYNLIRKE---VATPIICH 352 (448)
T ss_pred ceEE---------EEecC-C---------------------CCceEEEEEEECCCCcEEEEechhhhhh---hcCCeecc
Confidence 0000 01110 1 0123677776655666889999987654 33444432
Q ss_pred cCCCceEEEEEEeCCeEEEEEecCC-----CeEEEEEEe
Q 036391 244 VSYANVHVDVGSLEGCLCVFCFYNL-----VYVDMWMMK 277 (389)
Q Consensus 244 ~~~~~~~~~l~~~~G~L~~~~~~~~-----~~l~iW~l~ 277 (389)
+ .-.--+|+|+++..... .-++||.--
T Consensus 353 ----G---~alf~DG~l~~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 353 ----G---YALFEDGRLVYFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred ----c---eeEecCCEEEEEecCCCCcceeccceeecCC
Confidence 2 23445899999886522 267888765
No 84
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=70.79 E-value=9.6 Score=22.51 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=19.7
Q ss_pred EEEEEEcCcEEEEEeCCCCcEEEE
Q 036391 314 KLLLEVRREKLVWFDLETNSLRTV 337 (389)
Q Consensus 314 ~i~l~~~~~~l~~yd~~~~~~~~v 337 (389)
.|++...++.++.+|.+|++..+-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEe
Confidence 577776677899999999998765
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.40 E-value=87 Score=28.64 Aligned_cols=113 Identities=13% Similarity=0.121 Sum_probs=62.6
Q ss_pred cCceeeECCeEEEEccCCCCCcEEEEEECCCce-eeeeCCCCccccCCCceEEEEEEeCCeE---EEEEecCCCeEEEEE
Q 036391 200 KGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKE-FYQLPLPDSVNVSYANVHVDVGSLEGCL---CVFCFYNLVYVDMWM 275 (389)
Q Consensus 200 ~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~-~~~i~~P~~~~~~~~~~~~~l~~~~G~L---~~~~~~~~~~l~iW~ 275 (389)
.-.+|.|+|..- ++ ++...-|-.||+.+.. -..+-.|.. .+......+.+ .++...++..+.||.
T Consensus 45 sitavAVs~~~~--aS-GssDetI~IYDm~k~~qlg~ll~Hag--------sitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 45 SITALAVSGPYV--AS-GSSDETIHIYDMRKRKQLGILLSHAG--------SITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ceeEEEecceeE--ec-cCCCCcEEEEeccchhhhcceecccc--------ceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 345677888633 22 2344679999997653 233333322 12333334444 566666667899998
Q ss_pred EeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcE
Q 036391 276 MKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSL 334 (389)
Q Consensus 276 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~ 334 (389)
-+ +|..+..+....- ...-+++++.|.+-+-...+..+-.+|+-+++.
T Consensus 114 ~~------~W~~~~slK~H~~-----~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 114 VG------SWELLKSLKAHKG-----QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cC------CeEEeeeeccccc-----ccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 76 4988887765431 133456666554444333344455555555443
No 86
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=68.72 E-value=1.1e+02 Score=29.20 Aligned_cols=120 Identities=13% Similarity=0.181 Sum_probs=66.3
Q ss_pred eECCeEEEEccCCCCCcEEEEEECCCce---eeeeCCCCccccCCCceEEEEEEeCCeEEEEEecCC-CeEEEEEEeeCC
Q 036391 205 LAGGALHWVSPKSSTRSVIMAFNLVAKE---FYQLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNL-VYVDMWMMKEHA 280 (389)
Q Consensus 205 ~~~G~lywl~~~~~~~~~il~fD~~~e~---~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-~~l~iW~l~~~~ 280 (389)
..++.+|.++........|++.|+.+-. |..+-.|... +..--.+...++.|.+...... ..+.++.+.
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~----~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~--- 357 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE----DVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD--- 357 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS----SEEEEEEEEETTEEEEEEEETTEEEEEEEETT---
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC----ceeEEEEEEECCEEEEEEEECCccEEEEEECC---
Confidence 4578888887765556799999998765 5543333221 1112355667888887766543 244444444
Q ss_pred CCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC----cEEEEEeCCCCcEEEEE
Q 036391 281 VKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR----EKLVWFDLETNSLRTVK 338 (389)
Q Consensus 281 ~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~----~~l~~yd~~~~~~~~v~ 338 (389)
..|... .+.+... + ....+....+++.+++...+ ..++.||+.+++.+.+.
T Consensus 358 --~~~~~~-~~~~p~~-g---~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 358 --DGKESR-EIPLPEA-G---SVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp ---TEEEE-EEESSSS-S---EEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred --CCcEEe-eecCCcc-e---EEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 135443 3333221 1 11222223467788887543 36999999999998774
No 87
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=68.46 E-value=8.6 Score=24.15 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=18.0
Q ss_pred ceEEEEcCCcccccccCCCCC
Q 036391 104 QELALFNPSTRKLKTLPLPPC 124 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~ 124 (389)
+.++++||.|++|.+++.+|.
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred cCEEEEECCCCEEEECCCCCC
Confidence 468999999999999977764
No 88
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=68.45 E-value=1e+02 Score=28.70 Aligned_cols=120 Identities=14% Similarity=0.140 Sum_probs=66.8
Q ss_pred ceeeEC--CeEEEEccCCCCCcEEEEEECCCceeeee---CCCCccccCCCceEE---EEEE---eCCeEEEEEec----
Q 036391 202 YGVLAG--GALHWVSPKSSTRSVIMAFNLVAKEFYQL---PLPDSVNVSYANVHV---DVGS---LEGCLCVFCFY---- 266 (389)
Q Consensus 202 ~~v~~~--G~lywl~~~~~~~~~il~fD~~~e~~~~i---~~P~~~~~~~~~~~~---~l~~---~~G~L~~~~~~---- 266 (389)
.+++.+ |.+||.+.. ..|...|++.+.-... ++-..... .+.+++ ++.. -.|+||+.--.
T Consensus 188 ~~~~~~~~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~e~-~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g 262 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDAEK-ADGWRPGGWQLIAYHAASGRLYVLMHQGGEG 262 (342)
T ss_dssp --EEETTTTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HHHH-HTTEEE-SSS-EEEETTTTEEEEEEEE--TT
T ss_pred ccceECCCCeEEEEecC----CEEEEEeccCCcccccCcccccCcccc-ccCcCCcceeeeeeccccCeEEEEecCCCCC
Confidence 345443 678887665 6799999988764432 22111100 123332 2222 37788876432
Q ss_pred --CCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc--CcEEEEEeCCCCcEEE
Q 036391 267 --NLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR--REKLVWFDLETNSLRT 336 (389)
Q Consensus 267 --~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~--~~~l~~yd~~~~~~~~ 336 (389)
+...-+||+++-. .=.++.+|++.. ....++++.+.+=.++... ...|++||..|++...
T Consensus 263 sHKdpgteVWv~D~~----t~krv~Ri~l~~------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 263 SHKDPGTEVWVYDLK----THKRVARIPLEH------PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp -TTS-EEEEEEEETT----TTEEEEEEEEEE------EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CccCCceEEEEEECC----CCeEEEEEeCCC------ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 2337789999852 224677777642 1345777876665565532 3579999999987543
No 89
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=68.02 E-value=14 Score=27.02 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=14.5
Q ss_pred cEEEEEeCCCCcEEEE
Q 036391 322 EKLVWFDLETNSLRTV 337 (389)
Q Consensus 322 ~~l~~yd~~~~~~~~v 337 (389)
++|+.||++|++.+.+
T Consensus 37 GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred cCEEEEECCCCeEEEe
Confidence 4799999999999887
No 90
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=67.74 E-value=1.7e+02 Score=30.87 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=25.1
Q ss_pred ccCceeeECCeEEEEccCCCCCcEEEEEECCC--ceeee
Q 036391 199 RKGYGVLAGGALHWVSPKSSTRSVIMAFNLVA--KEFYQ 235 (389)
Q Consensus 199 ~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~--e~~~~ 235 (389)
.+..++.++|.+|..+.. ..+.++|..+ +.|+.
T Consensus 186 ~e~TPlvvgg~lYv~t~~----~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 186 FQATPLKVGDTLYLCTPH----NKVIALDAATGKEKWKF 220 (764)
T ss_pred cccCCEEECCEEEEECCC----CeEEEEECCCCcEEEEE
Confidence 345689999999987543 5799999985 55765
No 91
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=66.04 E-value=1.1e+02 Score=28.38 Aligned_cols=120 Identities=16% Similarity=0.232 Sum_probs=69.1
Q ss_pred CCe-EEEEccCCCCCcEEEEEECC--Cceeeee----CCCCccccCCCceEEEEEEe-CCeEEEEEecCCCeEEEEEEee
Q 036391 207 GGA-LHWVSPKSSTRSVIMAFNLV--AKEFYQL----PLPDSVNVSYANVHVDVGSL-EGCLCVFCFYNLVYVDMWMMKE 278 (389)
Q Consensus 207 ~G~-lywl~~~~~~~~~il~fD~~--~e~~~~i----~~P~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~l~iW~l~~ 278 (389)
+|. +|.... ....|.+|++. +..+..+ .+|.... .......+... +|+..++.......+.++.++.
T Consensus 202 dg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 202 DGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFT--GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp TSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSC--SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred CcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeecccccc--ccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 554 555432 23467777766 5566554 3454332 11123344444 7776566555566899999965
Q ss_pred CCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc-CcEEEEE--eCCCCcEEEEE
Q 036391 279 HAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVWF--DLETNSLRTVK 338 (389)
Q Consensus 279 ~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~-~~~l~~y--d~~~~~~~~v~ 338 (389)
. ...-+.+..++... ...+-+.+.++|+.++.... ++.+.+| |.++++++.+.
T Consensus 277 ~--~g~l~~~~~~~~~G-----~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 277 A--TGTLTLVQTVPTGG-----KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp T--TTTEEEEEEEEESS-----SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred C--CCceEEEEEEeCCC-----CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 3 23455555555421 12455677789998887753 4566666 67889988873
No 92
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=63.00 E-value=33 Score=26.18 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=29.9
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEE
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVL 152 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~ 152 (389)
..+++.||.|+.|..+-+.+ .....+.+-+++..+.|.|+...
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~------~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGS------QGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCC------CCcceEEEEEcCCCCEEEEEEee
Confidence 46889999999865432211 23445667778888999999764
No 93
>PLN00181 protein SPA1-RELATED; Provisional
Probab=62.25 E-value=2.1e+02 Score=30.19 Aligned_cols=191 Identities=10% Similarity=0.002 Sum_probs=93.5
Q ss_pred eEEEeeCCceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCc
Q 036391 96 LIALCNSVQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINS 175 (389)
Q Consensus 96 Ll~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~ 175 (389)
.|.....+..+.|||..+++.... ... +.....++.+++..+.+-+. .. ....+.+|+..++.
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~--~~~-----H~~~V~~l~~~p~~~~~L~S--gs--------~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTE--MKE-----HEKRVWSIDYSSADPTLLAS--GS--------DDGSVKLWSINQGV 609 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEE--ecC-----CCCCEEEEEEcCCCCCEEEE--Ec--------CCCEEEEEECCCCc
Confidence 344344567889999887654321 111 12234556666544433222 11 23467888877642
Q ss_pred E-EEcccCCcccccccccccccccccCceeeE---CCeEEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEE
Q 036391 176 W-RRISNLPRFLRDFYDYLYHSLFRKGYGVLA---GGALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHV 251 (389)
Q Consensus 176 W-~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~ 251 (389)
- ..+.. . ..-.++.+ +|.....+. ....|..+|+.+..-....+.... ... .
T Consensus 610 ~~~~~~~-~---------------~~v~~v~~~~~~g~~latgs---~dg~I~iwD~~~~~~~~~~~~~h~----~~V-~ 665 (793)
T PLN00181 610 SIGTIKT-K---------------ANICCVQFPSESGRSLAFGS---ADHKVYYYDLRNPKLPLCTMIGHS----KTV-S 665 (793)
T ss_pred EEEEEec-C---------------CCeEEEEEeCCCCCEEEEEe---CCCeEEEEECCCCCccceEecCCC----CCE-E
Confidence 1 11110 0 00011111 244433332 235788899876431111111111 111 1
Q ss_pred EEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCC
Q 036391 252 DVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLET 331 (389)
Q Consensus 252 ~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~ 331 (389)
.+.-.+|...+.+.. +..+.||-+........|..+..+.... .....+++.++|..|..+..++.+..||...
T Consensus 666 ~v~f~~~~~lvs~s~-D~~ikiWd~~~~~~~~~~~~l~~~~gh~-----~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 666 YVRFVDSSTLVSSST-DNTLKLWDLSMSISGINETPLHSFMGHT-----NVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred EEEEeCCCEEEEEEC-CCEEEEEeCCCCccccCCcceEEEcCCC-----CCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 233346665444443 4489999987432223455555544221 1234467777777776666677899999766
Q ss_pred Cc
Q 036391 332 NS 333 (389)
Q Consensus 332 ~~ 333 (389)
..
T Consensus 740 ~~ 741 (793)
T PLN00181 740 PM 741 (793)
T ss_pred CC
Confidence 53
No 94
>PRK05137 tolB translocation protein TolB; Provisional
Probab=62.04 E-value=1.6e+02 Score=28.52 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=91.8
Q ss_pred CceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccC
Q 036391 103 VQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNL 182 (389)
Q Consensus 103 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~ 182 (389)
...++++|+.|++...+...+. ...+..+.|..+. ++.... . .....+.+++..++.-+.+...
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g--------~~~~~~~SPDG~~--la~~~~-~-----~g~~~Iy~~d~~~~~~~~Lt~~ 288 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPG--------MTFAPRFSPDGRK--VVMSLS-Q-----GGNTDIYTMDLRSGTTTRLTDS 288 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCC--------cccCcEECCCCCE--EEEEEe-c-----CCCceEEEEECCCCceEEccCC
Confidence 3579999999998877654432 0112333443222 221111 1 1234566778888776666432
Q ss_pred CcccccccccccccccccCceeeECCe-EEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCe-E
Q 036391 183 PRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGC-L 260 (389)
Q Consensus 183 p~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~-L 260 (389)
+.. .......-+|. +++.... .....|..+|+.+...+.+....... ..+... -+|+ |
T Consensus 289 ~~~-------------~~~~~~spDG~~i~f~s~~-~g~~~Iy~~d~~g~~~~~lt~~~~~~-----~~~~~S-pdG~~i 348 (435)
T PRK05137 289 PAI-------------DTSPSYSPDGSQIVFESDR-SGSPQLYVMNADGSNPRRISFGGGRY-----STPVWS-PRGDLI 348 (435)
T ss_pred CCc-------------cCceeEcCCCCEEEEEECC-CCCCeEEEEECCCCCeEEeecCCCcc-----cCeEEC-CCCCEE
Confidence 210 01111223453 3333322 22346888888877766664321110 011222 2444 4
Q ss_pred EEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC------cEEEEEeCCCCcE
Q 036391 261 CVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR------EKLVWFDLETNSL 334 (389)
Q Consensus 261 ~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~------~~l~~yd~~~~~~ 334 (389)
+++.. ......||+++-.+ .....+ .... . ..-..+++||+.|++.... ..|+.+|+.++..
T Consensus 349 a~~~~-~~~~~~i~~~d~~~--~~~~~l---t~~~-----~-~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 349 AFTKQ-GGGQFSIGVMKPDG--SGERIL---TSGF-----L-VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEEc-CCCceEEEEEECCC--CceEec---cCCC-----C-CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 44443 22246677766422 222111 1111 1 1233567789888876431 3699999988877
Q ss_pred EEE
Q 036391 335 RTV 337 (389)
Q Consensus 335 ~~v 337 (389)
+.+
T Consensus 417 ~~l 419 (435)
T PRK05137 417 REV 419 (435)
T ss_pred EEc
Confidence 665
No 95
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=61.99 E-value=20 Score=27.02 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=30.1
Q ss_pred CceEEEEcCCcc-cccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEE
Q 036391 103 VQELALFNPSTR-KLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVL 152 (389)
Q Consensus 103 ~~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~ 152 (389)
...++++||.|+ .|.. ..+ ....+.+-+|+..+.|+||.+.
T Consensus 10 rA~V~~yd~~tKk~WvP--s~~-------~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 10 RAHVFQIDPKTKKNWIP--ASK-------HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eeEEEEECCCCcceeEe--CCC-------CceeEEEEecCCCcEEEEEEec
Confidence 346899999986 7763 332 1246778889999999999854
No 96
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=61.89 E-value=26 Score=20.74 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=17.9
Q ss_pred CceeeECCeEEEEccCCCCCcEEEEEECCC
Q 036391 201 GYGVLAGGALHWVSPKSSTRSVIMAFNLVA 230 (389)
Q Consensus 201 ~~~v~~~G~lywl~~~~~~~~~il~fD~~~ 230 (389)
.+++..+|.+|..+.. ..+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~d----g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD----GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT----SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC----CEEEEEeCCC
Confidence 4568889999986543 6899999864
No 97
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=61.73 E-value=1.6e+02 Score=28.63 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=33.7
Q ss_pred CCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEe-CCeEEEEEecCCCeEEEEEEee
Q 036391 219 TRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSL-EGCLCVFCFYNLVYVDMWMMKE 278 (389)
Q Consensus 219 ~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~l~iW~l~~ 278 (389)
....+..||..+..-..+.-+.... . .+.+. +|+-.+++.+ .++||+.+-
T Consensus 380 dgD~l~iyd~~~~e~kr~e~~lg~I------~-av~vs~dGK~~vvaNd---r~el~vidi 430 (668)
T COG4946 380 DGDKLGIYDKDGGEVKRIEKDLGNI------E-AVKVSPDGKKVVVAND---RFELWVIDI 430 (668)
T ss_pred CCceEEEEecCCceEEEeeCCccce------E-EEEEcCCCcEEEEEcC---ceEEEEEEe
Confidence 3468999999999888887765442 1 33444 6675555433 688898874
No 98
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=61.57 E-value=1.1e+02 Score=26.79 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=61.2
Q ss_pred cceEEEee-CCceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcC
Q 036391 94 NGLIALCN-SVQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLK 172 (389)
Q Consensus 94 ~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~ 172 (389)
+|=-|+.. .+..+-+|||..+...+-=.... +..--++..+| +=|+.. . .....+.+++..
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsghG-----~EVlD~~~s~D----nskf~s----~-----GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHG-----HEVLDAALSSD----NSKFAS----C-----GGDKAVQVWDVN 89 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecCCC-----ceeeecccccc----cccccc----C-----CCCceEEEEEcc
Confidence 34445543 56789999999887654211110 01111122222 122111 1 133467888888
Q ss_pred CC----cEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCceeeeeCCCCcc
Q 036391 173 IN----SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSV 242 (389)
Q Consensus 173 ~~----~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 242 (389)
+| +||....-- ........++|.+.|.+ ...+-++|..+..+..|+.-...
T Consensus 90 TGkv~Rr~rgH~aqV----------NtV~fNeesSVv~Sgsf---------D~s~r~wDCRS~s~ePiQildea 144 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQV----------NTVRFNEESSVVASGSF---------DSSVRLWDCRSRSFEPIQILDEA 144 (307)
T ss_pred cCeeeeeccccccee----------eEEEecCcceEEEeccc---------cceeEEEEcccCCCCccchhhhh
Confidence 86 466443211 12233455667766664 35799999999999988775544
No 99
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=60.51 E-value=2.1e+02 Score=29.58 Aligned_cols=114 Identities=12% Similarity=0.179 Sum_probs=71.4
Q ss_pred ccCceeeEC--CeEEEEccCCCCCcEEEEEECCCceeeee-CCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEE
Q 036391 199 RKGYGVLAG--GALHWVSPKSSTRSVIMAFNLVAKEFYQL-PLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWM 275 (389)
Q Consensus 199 ~~~~~v~~~--G~lywl~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~ 275 (389)
.+.++|.++ |-+-+.+.. ....|.+-++.+.+--.+ .-.+..- . .+. ..-.|.+.+.... +.+++||-
T Consensus 436 ~QfscvavD~sGelV~AG~~--d~F~IfvWS~qTGqllDiLsGHEgPV---s--~l~-f~~~~~~LaS~SW-DkTVRiW~ 506 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQ--DSFEIFVWSVQTGQLLDILSGHEGPV---S--GLS-FSPDGSLLASGSW-DKTVRIWD 506 (893)
T ss_pred eeeeEEEEcCCCCEEEeecc--ceEEEEEEEeecCeeeehhcCCCCcc---e--eeE-EccccCeEEeccc-cceEEEEE
Confidence 345667777 888776654 346788888888876554 3222221 0 111 2224443333333 34899998
Q ss_pred EeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCC
Q 036391 276 MKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETN 332 (389)
Q Consensus 276 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~ 332 (389)
+-+ +|..+..++.... ..-+.|.++|+.|...+-++.+-.||.+..
T Consensus 507 if~-----s~~~vEtl~i~sd------vl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 507 IFS-----SSGTVETLEIRSD------VLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred eec-----cCceeeeEeeccc------eeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 875 5667777776432 345777889999988877777888887654
No 100
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=59.99 E-value=1.7e+02 Score=28.28 Aligned_cols=186 Identities=13% Similarity=0.112 Sum_probs=94.2
Q ss_pred EeeecceEEEeeCCceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEE
Q 036391 90 LGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVY 169 (389)
Q Consensus 90 ~~s~~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vy 169 (389)
++.++-.|.+....+.+.+.--.|+++..=-.. .....++.|+ ++. |.+.+.+ ..-.+.|+
T Consensus 311 VShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--------eG~v~~~~fs--Sds-k~l~~~~--------~~GeV~v~ 371 (514)
T KOG2055|consen 311 VSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--------EGVVSDFTFS--SDS-KELLASG--------GTGEVYVW 371 (514)
T ss_pred ecCCCCeEEEcccCceEEeehhhhhhhhheeee--------ccEEeeEEEe--cCC-cEEEEEc--------CCceEEEE
Confidence 455666777777777888888888887642222 2234445555 333 5454442 22378889
Q ss_pred EcCCC----cEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCceeeeeCCCCccccC
Q 036391 170 SLKIN----SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVS 245 (389)
Q Consensus 170 ss~~~----~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~ 245 (389)
+++.+ .|..-+..- ...-+...||. |++. +.....+=.||..+..-..-|-|....
T Consensus 372 nl~~~~~~~rf~D~G~v~---------------gts~~~S~ng~--ylA~-GS~~GiVNIYd~~s~~~s~~PkPik~~-- 431 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVH---------------GTSLCISLNGS--YLAT-GSDSGIVNIYDGNSCFASTNPKPIKTV-- 431 (514)
T ss_pred ecCCcceEEEEeecCccc---------------eeeeeecCCCc--eEEe-ccCcceEEEeccchhhccCCCCchhhh--
Confidence 98876 344433221 12223447788 3333 223456667776665555556665332
Q ss_pred CCceEEEEE--Ee--CCeE-EEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCC---CC---CCCcceeeeEEEEeCCCE
Q 036391 246 YANVHVDVG--SL--EGCL-CVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEP---TP---TRSFLFLRPLGYSRNGVK 314 (389)
Q Consensus 246 ~~~~~~~l~--~~--~G~L-~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~---~~---~~~~~~~~p~~~~~~g~~ 314 (389)
++..-.+. .. ++.| +++.......+ .++|.-... .+ .....+..-++|+++|+.
T Consensus 432 -dNLtt~Itsl~Fn~d~qiLAiaS~~~knal--------------rLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~ 496 (514)
T KOG2055|consen 432 -DNLTTAITSLQFNHDAQILAIASRVKKNAL--------------RLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGY 496 (514)
T ss_pred -hhhheeeeeeeeCcchhhhhhhhhccccce--------------EEEeccceeeeccCCCCCCcccceEEEEecCCCce
Confidence 11111111 11 2222 22221111122 222211111 11 122345677889999988
Q ss_pred EEEEEcCcEEEEEeC
Q 036391 315 LLLEVRREKLVWFDL 329 (389)
Q Consensus 315 i~l~~~~~~l~~yd~ 329 (389)
+-++...+++-.|-+
T Consensus 497 lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 497 LAVGNEAGRVHLFKL 511 (514)
T ss_pred EEeecCCCceeeEee
Confidence 888777777766644
No 101
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=59.75 E-value=2.4e+02 Score=29.84 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=30.0
Q ss_pred eEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCC
Q 036391 270 YVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLET 331 (389)
Q Consensus 270 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~ 331 (389)
.+.||.+++......|..+..-.- ....+++.-++.+++|+.+.+...++.+.+|+.++
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~---~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNE---FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred eEEEEEcccchhhhhcccCCcccc---ccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 788999886443344544431110 00112333445566655555544445566666554
No 102
>PRK04043 tolB translocation protein TolB; Provisional
Probab=58.87 E-value=1.8e+02 Score=28.14 Aligned_cols=103 Identities=13% Similarity=0.183 Sum_probs=59.4
Q ss_pred CcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCC-eEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCC
Q 036391 220 RSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEG-CLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTR 298 (389)
Q Consensus 220 ~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G-~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 298 (389)
...|..+|+.+.+-+.+.-..... .... ..-+| +|.+.... ...-+||.++-.+ ..+.++...+..
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~-----~~~~-~SPDG~~la~~~~~-~g~~~Iy~~dl~~--g~~~~LT~~~~~---- 278 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGML-----VVSD-VSKDGSKLLLTMAP-KGQPDIYLYDTNT--KTLTQITNYPGI---- 278 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcE-----EeeE-ECCCCCEEEEEEcc-CCCcEEEEEECCC--CcEEEcccCCCc----
Confidence 347899999887776663222211 0112 23356 45444433 3367899988432 345544322110
Q ss_pred CcceeeeEEEEeCCCEEEEEEcC---cEEEEEeCCCCcEEEEEE
Q 036391 299 SFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTVKI 339 (389)
Q Consensus 299 ~~~~~~p~~~~~~g~~i~l~~~~---~~l~~yd~~~~~~~~v~~ 339 (389)
...| .+++||..|++..+. ..++.+|+.+++.+.+..
T Consensus 279 ---d~~p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 279 ---DVNG-NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred ---cCcc-EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 1122 467789888887542 269999999999877743
No 103
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=57.13 E-value=79 Score=28.37 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCceEEEEEEe-CCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEE
Q 036391 246 YANVHVDVGSL-EGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKL 324 (389)
Q Consensus 246 ~~~~~~~l~~~-~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l 324 (389)
+..+.-.+++. ||.||.....+. ++-+|-|.+ .+. ++..+... ....++|.+|.-.+....... +
T Consensus 191 h~~~v~t~~vSpDGslcasGgkdg-~~~LwdL~~---~k~---lysl~a~~------~v~sl~fspnrywL~~at~~s-I 256 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGSLCASGGKDG-EAMLWDLNE---GKN---LYSLEAFD------IVNSLCFSPNRYWLCAATATS-I 256 (315)
T ss_pred ccccEEEEEECCCCCEEecCCCCc-eEEEEEccC---Cce---eEeccCCC------eEeeEEecCCceeEeeccCCc-e
Q ss_pred EEEeCCCCcE
Q 036391 325 VWFDLETNSL 334 (389)
Q Consensus 325 ~~yd~~~~~~ 334 (389)
..+|++++..
T Consensus 257 kIwdl~~~~~ 266 (315)
T KOG0279|consen 257 KIWDLESKAV 266 (315)
T ss_pred EEEeccchhh
No 104
>PF13013 F-box-like_2: F-box-like domain
Probab=56.40 E-value=7.2 Score=29.64 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHHhcCCccchhhhcccch
Q 036391 2 SKKIPLDIIADIFCRQPVKSLLRFRCVSK 30 (389)
Q Consensus 2 ~~~LP~Dll~~IL~rLP~ksl~r~r~VcK 30 (389)
+.+||+||+..|+..-.-..+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56899999999999998777765555555
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.20 E-value=2e+02 Score=27.91 Aligned_cols=184 Identities=16% Similarity=0.191 Sum_probs=96.8
Q ss_pred cCCcccccccCCCCCCCCCCCceeEEEEeeecCC-CCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEE-cccCCcccc
Q 036391 110 NPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSN-DDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRR-ISNLPRFLR 187 (389)
Q Consensus 110 NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~-~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~-~~~~p~~~~ 187 (389)
+|-++-|.+.-.++. .........+.|.|.. .+|-|. ...++.+|++.+.+=+. +..+.
T Consensus 8 t~e~~~w~~~~~~~~---~ke~~~vssl~fsp~~P~d~aVt------------~S~rvqly~~~~~~~~k~~srFk---- 68 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPV---HKEHNSVSSLCFSPKHPYDFAVT------------SSVRVQLYSSVTRSVRKTFSRFK---- 68 (487)
T ss_pred Cccchhhhhhccccc---ccccCcceeEecCCCCCCceEEe------------cccEEEEEecchhhhhhhHHhhc----
Confidence 555666666544442 1123344456666643 233332 34578999998753222 21111
Q ss_pred cccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCce-eeeeC---CCCccccCCCceEEEEEEeCCeEEEE
Q 036391 188 DFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKE-FYQLP---LPDSVNVSYANVHVDVGSLEGCLCVF 263 (389)
Q Consensus 188 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~-~~~i~---~P~~~~~~~~~~~~~l~~~~G~L~~~ 263 (389)
.....-.+.-+|.+...+. ....|-.||..+.. .+.+. .|... .....-++.+.+.
T Consensus 69 ---------~~v~s~~fR~DG~LlaaGD---~sG~V~vfD~k~r~iLR~~~ah~apv~~--------~~f~~~d~t~l~s 128 (487)
T KOG0310|consen 69 ---------DVVYSVDFRSDGRLLAAGD---ESGHVKVFDMKSRVILRQLYAHQAPVHV--------TKFSPQDNTMLVS 128 (487)
T ss_pred ---------cceeEEEeecCCeEEEccC---CcCcEEEeccccHHHHHHHhhccCceeE--------EEecccCCeEEEe
Confidence 0011123345699987754 34679999965522 22232 23221 2334455555555
Q ss_pred EecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEE-EEcCcEEEEEeCCCCcEEEEEEecC
Q 036391 264 CFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLL-EVRREKLVWFDLETNSLRTVKIDTH 342 (389)
Q Consensus 264 ~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l-~~~~~~l~~yd~~~~~~~~v~~~~~ 342 (389)
+.+ +....+|.+.... + ...+.-. -++.+-..+++-.+-|++ +..++.+-.||.++..-+.+++. +
T Consensus 129 ~sD-d~v~k~~d~s~a~-----v-~~~l~~h-----tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-h 195 (487)
T KOG0310|consen 129 GSD-DKVVKYWDLSTAY-----V-QAELSGH-----TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-H 195 (487)
T ss_pred cCC-CceEEEEEcCCcE-----E-EEEecCC-----cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-C
Confidence 544 4488999998621 2 2223322 224566666664444555 44567899999999874444554 5
Q ss_pred CCC
Q 036391 343 GLD 345 (389)
Q Consensus 343 g~~ 345 (389)
|.|
T Consensus 196 g~p 198 (487)
T KOG0310|consen 196 GCP 198 (487)
T ss_pred CCc
Confidence 554
No 106
>PRK00178 tolB translocation protein TolB; Provisional
Probab=55.59 E-value=2e+02 Score=27.67 Aligned_cols=187 Identities=14% Similarity=0.055 Sum_probs=93.7
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCC
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
..++++|..|++...+...+. . .....+.|.. + +++..... . ....+.+++..++..+.+...+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g--~------~~~~~~SpDG-~-~la~~~~~-~-----g~~~Iy~~d~~~~~~~~lt~~~ 286 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG--L------NGAPAWSPDG-S-KLAFVLSK-D-----GNPEIYVMDLASRQLSRVTNHP 286 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC--C------cCCeEECCCC-C-EEEEEEcc-C-----CCceEEEEECCCCCeEEcccCC
Confidence 468999999988877764432 0 0123334432 2 22222111 1 2246778899988887765322
Q ss_pred cccccccccccccccccCceeeECC-eEEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEE
Q 036391 184 RFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCV 262 (389)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~ 262 (389)
. . .......-+| .+++.... .....|..+|+.+.....+....... .......-+..|++
T Consensus 287 ~-----------~--~~~~~~spDg~~i~f~s~~-~g~~~iy~~d~~~g~~~~lt~~~~~~-----~~~~~Spdg~~i~~ 347 (430)
T PRK00178 287 A-----------I--DTEPFWGKDGRTLYFTSDR-GGKPQIYKVNVNGGRAERVTFVGNYN-----ARPRLSADGKTLVM 347 (430)
T ss_pred C-----------C--cCCeEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCc-----cceEECCCCCEEEE
Confidence 0 0 0111112245 35554432 23357888898887776664322111 11122222334444
Q ss_pred EEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC---cEEEEEeCCCCcEEEE
Q 036391 263 FCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 337 (389)
Q Consensus 263 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~---~~l~~yd~~~~~~~~v 337 (389)
.... .....||.++-.+ .....+. .... ...| .+++||..|++.... ..++..+..++..+.+
T Consensus 348 ~~~~-~~~~~l~~~dl~t--g~~~~lt---~~~~-----~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 348 VHRQ-DGNFHVAAQDLQR--GSVRILT---DTSL-----DESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred EEcc-CCceEEEEEECCC--CCEEEcc---CCCC-----CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 4332 2355677776422 2333322 1111 1233 567789888887542 3588888876655555
No 107
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=55.30 E-value=8.4 Score=35.39 Aligned_cols=37 Identities=11% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCCCcHHHHHHHHhcCC--------ccchhhhcccchhhhhhhCC
Q 036391 2 SKKIPLDIIADIFCRQP--------VKSLLRFRCVSKTCCSLIDS 38 (389)
Q Consensus 2 ~~~LP~Dll~~IL~rLP--------~ksl~r~r~VcK~W~~li~s 38 (389)
+++||.++|.+|+.|.. -++++.+..||+.|+.+..+
T Consensus 45 ~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 45 WAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 57899999999999985 34688999999999987654
No 108
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=55.10 E-value=35 Score=33.17 Aligned_cols=144 Identities=15% Similarity=0.011 Sum_probs=78.2
Q ss_pred EEEEcCCcccccccCCCCCCC----CCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEccc
Q 036391 106 LALFNPSTRKLKTLPLPPCFV----GFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISN 181 (389)
Q Consensus 106 ~~V~NP~T~~~~~LP~~~~~~----~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~ 181 (389)
+..--|.|-.|.++|+..... ..+.......|.+++.++--.+..-. ++........+|+.+.+.|..+..
T Consensus 231 ~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGW-----dG~~~l~DFW~Y~v~e~~W~~iN~ 305 (723)
T KOG2437|consen 231 YISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGW-----DGTQDLADFWAYSVKENQWTCINR 305 (723)
T ss_pred hhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCc-----ccchhHHHHHhhcCCcceeEEeec
Confidence 344467888888888766311 11223344556666655433333222 112233456789999999998752
Q ss_pred ---CCcccccccccccccccccCceeeECC--eEEEEccC--------CCCCcEEEEEECCCceeeeeCCCCccccC-CC
Q 036391 182 ---LPRFLRDFYDYLYHSLFRKGYGVLAGG--ALHWVSPK--------SSTRSVIMAFNLVAKEFYQLPLPDSVNVS-YA 247 (389)
Q Consensus 182 ---~p~~~~~~~~~~~~~~~~~~~~v~~~G--~lywl~~~--------~~~~~~il~fD~~~e~~~~i~~P~~~~~~-~~ 247 (389)
.| ..+..+..|.--. ++|-++.. -..+.-+-.||..+.+|..+..-...++- ..
T Consensus 306 ~t~~P------------G~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~ 373 (723)
T KOG2437|consen 306 DTEGP------------GARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKL 373 (723)
T ss_pred CCCCC------------cchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcce
Confidence 34 1122333343333 66666543 12335689999999999998665443210 01
Q ss_pred ceEEEEEEeCCe--EEEEEec
Q 036391 248 NVHVDVGSLEGC--LCVFCFY 266 (389)
Q Consensus 248 ~~~~~l~~~~G~--L~~~~~~ 266 (389)
-+...+++.+.+ ||+.++.
T Consensus 374 vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 374 VFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred eecceeeEecCcceEEEecCe
Confidence 122245555444 7777654
No 109
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=54.06 E-value=1.1e+02 Score=30.41 Aligned_cols=103 Identities=13% Similarity=0.205 Sum_probs=56.8
Q ss_pred cEEEEEECCCceeee-eCCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCC----C
Q 036391 221 SVIMAFNLVAKEFYQ-LPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEP----T 295 (389)
Q Consensus 221 ~~il~fD~~~e~~~~-i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~----~ 295 (389)
..|..||++-.+|-. +..-... -..+.+..++|-|++-+ ....++.|-.-.- + .+..++.. .
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~-----lN~v~in~~hgLla~Gt--~~g~VEfwDpR~k---s---rv~~l~~~~~v~s 221 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGE-----LNVVSINEEHGLLACGT--EDGVVEFWDPRDK---S---RVGTLDAASSVNS 221 (703)
T ss_pred cceEEEEcccccccccccccccc-----ceeeeecCccceEEecc--cCceEEEecchhh---h---hheeeecccccCC
Confidence 569999999998854 3332111 11345666777665433 2447888866541 1 12222211 1
Q ss_pred CCCC--cceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEE
Q 036391 296 PTRS--FLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 336 (389)
Q Consensus 296 ~~~~--~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~ 336 (389)
..+. ......+.|..+|=.+-+++..+.++.||+++.+=-.
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL 264 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence 1111 1123446666566555566667789999999876433
No 110
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=53.90 E-value=1.5e+02 Score=25.81 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=63.4
Q ss_pred CCeEEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeE
Q 036391 207 GGALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWT 286 (389)
Q Consensus 207 ~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~ 286 (389)
+|.+||... ....|..+|+.+++...+..|... .+.+..-+|.|+++.... +.+. + .. ...++
T Consensus 11 ~g~l~~~D~---~~~~i~~~~~~~~~~~~~~~~~~~-------G~~~~~~~g~l~v~~~~~---~~~~--d-~~-~g~~~ 73 (246)
T PF08450_consen 11 DGRLYWVDI---PGGRIYRVDPDTGEVEVIDLPGPN-------GMAFDRPDGRLYVADSGG---IAVV--D-PD-TGKVT 73 (246)
T ss_dssp TTEEEEEET---TTTEEEEEETTTTEEEEEESSSEE-------EEEEECTTSEEEEEETTC---EEEE--E-TT-TTEEE
T ss_pred CCEEEEEEc---CCCEEEEEECCCCeEEEEecCCCc-------eEEEEccCCEEEEEEcCc---eEEE--e-cC-CCcEE
Confidence 699999854 346899999999999988887732 112222467777765432 2222 3 22 35677
Q ss_pred EEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc-C--------cEEEEEeCCCCcEEEE
Q 036391 287 KLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-R--------EKLVWFDLETNSLRTV 337 (389)
Q Consensus 287 ~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~-~--------~~l~~yd~~~~~~~~v 337 (389)
.+........ ......=+++.++|. +++... . ++++.+++. ++.+.+
T Consensus 74 ~~~~~~~~~~--~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 74 VLADLPDGGV--PFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEEEETTCS--CTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEeeccCCCc--ccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 7766632110 011122356677776 555432 1 458888988 665554
No 111
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=53.08 E-value=2.1e+02 Score=27.19 Aligned_cols=144 Identities=16% Similarity=0.169 Sum_probs=74.3
Q ss_pred eEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCe-EEEEccCCCCCcEEEEEECCCceeeeeCCCCcc
Q 036391 164 VEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSV 242 (389)
Q Consensus 164 ~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 242 (389)
..+.+++..++.-+.+...+. . .......-+|. +++.... .....|..+|+.+.....+......
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~----------~---~~~~~~spDg~~l~~~~~~-~~~~~i~~~d~~~~~~~~l~~~~~~ 279 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG----------M---NGAPAFSPDGSKLAVSLSK-DGNPDIYVMDLDGKQLTRLTNGPGI 279 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC----------C---ccceEECCCCCEEEEEECC-CCCccEEEEECCCCCEEECCCCCCC
Confidence 467888888876665543220 0 01112223453 4443322 2335688899988776665322111
Q ss_pred ccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCc
Q 036391 243 NVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE 322 (389)
Q Consensus 243 ~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~ 322 (389)
. . .... .-+|+-.++.........||.++-.+ ..+..+. ... .......++++|+.|++.....
T Consensus 280 ~--~---~~~~-s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~~l~---~~~-----~~~~~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 280 D--T---EPSW-SPDGKSIAFTSDRGGSPQIYMMDADG--GEVRRLT---FRG-----GYNASPSWSPDGDLIAFVHREG 343 (417)
T ss_pred C--C---CEEE-CCCCCEEEEEECCCCCceEEEEECCC--CCEEEee---cCC-----CCccCeEECCCCCEEEEEEccC
Confidence 1 0 1111 12565443333333345788777432 3343322 111 0112235667888888875443
Q ss_pred ---EEEEEeCCCCcEEEE
Q 036391 323 ---KLVWFDLETNSLRTV 337 (389)
Q Consensus 323 ---~l~~yd~~~~~~~~v 337 (389)
+++.||+.++.++.+
T Consensus 344 ~~~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 344 GGFNIAVMDLDGGGERVL 361 (417)
T ss_pred CceEEEEEeCCCCCeEEc
Confidence 799999999877665
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=52.68 E-value=1.3e+02 Score=29.52 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=36.7
Q ss_pred CcEEEEEECCCceeee-eCCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEee
Q 036391 220 RSVIMAFNLVAKEFYQ-LPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKE 278 (389)
Q Consensus 220 ~~~il~fD~~~e~~~~-i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~ 278 (389)
...+-..|+.+.+-+. .+++.... .++.--...+-+||+.+..+. .+.||-|.+
T Consensus 486 astlsiWDLAapTprikaeltssap----aCyALa~spDakvcFsccsdG-nI~vwDLhn 540 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDAKVCFSCCSDG-NIAVWDLHN 540 (705)
T ss_pred cceeeeeeccCCCcchhhhcCCcch----hhhhhhcCCccceeeeeccCC-cEEEEEccc
Confidence 4567788888887776 36665432 223333455889999887655 899999886
No 113
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=51.12 E-value=2.1e+02 Score=26.64 Aligned_cols=121 Identities=12% Similarity=0.151 Sum_probs=70.2
Q ss_pred eEEEEccCCCCCcEEEEEECCC--ceeeee-CCCCccccCCCceEEEEEEe-CCeEEEEEecCCCeEEEEEEeeCCCCCC
Q 036391 209 ALHWVSPKSSTRSVIMAFNLVA--KEFYQL-PLPDSVNVSYANVHVDVGSL-EGCLCVFCFYNLVYVDMWMMKEHAVKES 284 (389)
Q Consensus 209 ~lywl~~~~~~~~~il~fD~~~--e~~~~i-~~P~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~l~iW~l~~~~~~~~ 284 (389)
.+|-.... +....|.+|.... .+.+.+ ..+.... .. ..+... +|++.++.......+.+..+++.| .-
T Consensus 53 ~LY~v~~~-~~~ggvaay~iD~~~G~Lt~ln~~~~~g~---~p--~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG--~l 124 (346)
T COG2706 53 HLYVVNEP-GEEGGVAAYRIDPDDGRLTFLNRQTLPGS---PP--CYVSVDEDGRFVFVANYHSGSVSVYPLQADG--SL 124 (346)
T ss_pred EEEEEEec-CCcCcEEEEEEcCCCCeEEEeeccccCCC---CC--eEEEECCCCCEEEEEEccCceEEEEEcccCC--cc
Confidence 56766543 3356677777664 677776 2222221 11 234444 555555555545589999998765 34
Q ss_pred eEEEEEEcCCCCC--C--CcceeeeEEEEeCCCEEEEEE-cCcEEEEEeCCCCcEEEE
Q 036391 285 WTKLISVQEPTPT--R--SFLFLRPLGYSRNGVKLLLEV-RREKLVWFDLETNSLRTV 337 (389)
Q Consensus 285 W~~~~~i~~~~~~--~--~~~~~~p~~~~~~g~~i~l~~-~~~~l~~yd~~~~~~~~v 337 (389)
|..+..+.....- . ...+.....+.++|..++... ...+++.|+++.++++..
T Consensus 125 ~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~ 182 (346)
T COG2706 125 QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA 182 (346)
T ss_pred ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence 5554444332110 1 112356677788887666543 345799999998888755
No 114
>PF15408 PH_7: Pleckstrin homology domain
Probab=51.09 E-value=6.9 Score=27.88 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.2
Q ss_pred ccchhhhcccchhhhhhhCCHHHH
Q 036391 19 VKSLLRFRCVSKTCCSLIDSQDFI 42 (389)
Q Consensus 19 ~ksl~r~r~VcK~W~~li~s~~F~ 42 (389)
++-++..+-|||+|-.++.+|+|.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhh
Confidence 455667788999999999999985
No 115
>PRK04792 tolB translocation protein TolB; Provisional
Probab=49.59 E-value=2.6e+02 Score=27.24 Aligned_cols=114 Identities=14% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCe-EEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCe
Q 036391 207 GGA-LHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESW 285 (389)
Q Consensus 207 ~G~-lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W 285 (389)
+|. +++.... .....|..+|+.+.+...+.-..... . .+.. .-+|+-.++........+||.++-.+ ..+
T Consensus 272 DG~~La~~~~~-~g~~~Iy~~dl~tg~~~~lt~~~~~~---~--~p~w-SpDG~~I~f~s~~~g~~~Iy~~dl~~--g~~ 342 (448)
T PRK04792 272 DGKKLALVLSK-DGQPEIYVVDIATKALTRITRHRAID---T--EPSW-HPDGKSLIFTSERGGKPQIYRVNLAS--GKV 342 (448)
T ss_pred CCCEEEEEEeC-CCCeEEEEEECCCCCeEECccCCCCc---c--ceEE-CCCCCEEEEEECCCCCceEEEEECCC--CCE
Confidence 454 4443332 23356888999888776653321111 1 1111 23555433333333357889888532 345
Q ss_pred EEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC---cEEEEEeCCCCcEEEE
Q 036391 286 TKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 337 (389)
Q Consensus 286 ~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~---~~l~~yd~~~~~~~~v 337 (389)
.++. ..... ... ..+++||+.|++.... .+++.+|+++++.+.+
T Consensus 343 ~~Lt-~~g~~------~~~-~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l 389 (448)
T PRK04792 343 SRLT-FEGEQ------NLG-GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVL 389 (448)
T ss_pred EEEe-cCCCC------CcC-eeECCCCCEEEEEEecCCceEEEEEECCCCCeEEc
Confidence 4442 11100 112 3567789888886432 3688999999988765
No 116
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=48.26 E-value=2.2e+02 Score=26.07 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred CeEEEEccCCCCC-cEEEEEECCCc-----eeeee---CCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEee
Q 036391 208 GALHWVSPKSSTR-SVIMAFNLVAK-----EFYQL---PLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKE 278 (389)
Q Consensus 208 G~lywl~~~~~~~-~~il~fD~~~e-----~~~~i---~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~ 278 (389)
|+-|......... +.|+.|++... ++..+ +.+..+. .+...+|+|.+.... .+.++.+++
T Consensus 48 GT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~--------ai~~~~~~lv~~~g~---~l~v~~l~~ 116 (321)
T PF03178_consen 48 GTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVT--------AICSFNGRLVVAVGN---KLYVYDLDN 116 (321)
T ss_dssp EEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EE--------EEEEETTEEEEEETT---EEEEEEEET
T ss_pred EecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcce--------EhhhhCCEEEEeecC---EEEEEEccC
Q ss_pred CCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCc--EEEEEeCCCCcEEEE
Q 036391 279 HAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRRE--KLVWFDLETNSLRTV 337 (389)
Q Consensus 279 ~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~--~l~~yd~~~~~~~~v 337 (389)
.+.+..+...+.. .....+...++.|++..... .++.|+.+.+++..+
T Consensus 117 ---~~~l~~~~~~~~~--------~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 117 ---SKTLLKKAFYDSP--------FYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILV 166 (321)
T ss_dssp ---TSSEEEEEEE-BS--------SSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEE
T ss_pred ---cccchhhheecce--------EEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEE
No 117
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=47.91 E-value=2.4e+02 Score=26.31 Aligned_cols=159 Identities=12% Similarity=0.104 Sum_probs=80.3
Q ss_pred eeEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCceeeee----CC
Q 036391 163 EVEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQL----PL 238 (389)
Q Consensus 163 ~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i----~~ 238 (389)
..++.+|++..+.=......-. ..-...++-...=||.+=++...-...-.+..+|....++..+ .+
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v---------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEV---------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred CceEEEEEcccCcccccccccc---------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 3478899998776554431110 0011122223345676544444433334556666666788776 36
Q ss_pred CCccccCCCceEEEEE-EeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEE
Q 036391 239 PDSVNVSYANVHVDVG-SLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLL 317 (389)
Q Consensus 239 P~~~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l 317 (389)
|..... ......+- .-+|+..+++......|.+...++.+ ..=..+...+.... ..+-+-+.+.|+.++.
T Consensus 237 P~dF~g--~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~--g~L~~~~~~~teg~-----~PR~F~i~~~g~~Lia 307 (346)
T COG2706 237 PEDFTG--TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG--GKLELVGITPTEGQ-----FPRDFNINPSGRFLIA 307 (346)
T ss_pred ccccCC--CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC--CEEEEEEEeccCCc-----CCccceeCCCCCEEEE
Confidence 766542 22222332 33777666665554456666666543 22233333332221 1233444556665555
Q ss_pred EEc-CcE--EEEEeCCCCcEEEEEE
Q 036391 318 EVR-REK--LVWFDLETNSLRTVKI 339 (389)
Q Consensus 318 ~~~-~~~--l~~yd~~~~~~~~v~~ 339 (389)
... +.. ++.-|.+|+++..+..
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEeccc
Confidence 432 333 4455889999988743
No 118
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=47.87 E-value=2.2e+02 Score=25.96 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=42.8
Q ss_pred CCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEE
Q 036391 257 EGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 335 (389)
Q Consensus 257 ~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~ 335 (389)
+|.+++..+.+. .+-+|...+.. +.-|.+.. ... ..--+-...|+..|+-+..+..+..+|.++++-.
T Consensus 58 ~gs~~aSgG~Dr-~I~LWnv~gdc-eN~~~lkg---Hsg------AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~ 125 (338)
T KOG0265|consen 58 DGSCFASGGSDR-AIVLWNVYGDC-ENFWVLKG---HSG------AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRI 125 (338)
T ss_pred CCCeEeecCCcc-eEEEEeccccc-cceeeecc---ccc------eeEeeeeccCCCEEEEecCCceEEEEecccceee
Confidence 777666655544 89999855432 35576651 111 1112233458888887777788999999998753
No 119
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=47.78 E-value=2.5e+02 Score=26.48 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=69.7
Q ss_pred ECCeEEEEccCCCCCcEEEEEECCCc------eeeeeCCC---CccccCCCceEE-EEEEeCCeEEEEEec------CCC
Q 036391 206 AGGALHWVSPKSSTRSVIMAFNLVAK------EFYQLPLP---DSVNVSYANVHV-DVGSLEGCLCVFCFY------NLV 269 (389)
Q Consensus 206 ~~G~lywl~~~~~~~~~il~fD~~~e------~~~~i~~P---~~~~~~~~~~~~-~l~~~~G~L~~~~~~------~~~ 269 (389)
.+|..+|.+.. ..|..+|+.+. .|..+..- .... -..++. .+..-+++|++.... ...
T Consensus 204 ~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr--P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 204 KSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR--PGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred CCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccC--CCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 47899998764 67899996543 34443221 1111 112222 222235667764321 112
Q ss_pred eEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCC-EEEEEE-cCcEEEEEeCCCCc-EEEE
Q 036391 270 YVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGV-KLLLEV-RREKLVWFDLETNS-LRTV 337 (389)
Q Consensus 270 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~-~i~l~~-~~~~l~~yd~~~~~-~~~v 337 (389)
.=.||+++- .++..+.+|.... ....+++++||+ .++... .++.+.++|..+.+ ++.+
T Consensus 278 ~~~V~ViD~----~t~kvi~~i~vG~------~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 278 SRFLFVVDA----KTGKRLRKIELGH------EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCEEEEEEC----CCCeEEEEEeCCC------ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 347899884 5688888888754 256788899988 555443 24569999999975 4555
No 120
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=47.45 E-value=3.4e+02 Score=28.00 Aligned_cols=190 Identities=14% Similarity=0.134 Sum_probs=96.1
Q ss_pred EEeeecceEEEeeCCceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEE
Q 036391 89 VLGSCNGLIALCNSVQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEV 168 (389)
Q Consensus 89 ~~~s~~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~V 168 (389)
+.-+.||=.+.....+.+.+.+-.|++.. +|.... .......+ +..+|+ +=+++.+. ...-..+
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~-l~s~~~--ed~d~ita--~~l~~d--~~~L~~a~---------rs~llrv 88 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA-LPSGSN--EDEDEITA--LALTPD--EEVLVTAS---------RSQLLRV 88 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee-cccCCc--cchhhhhe--eeecCC--ccEEEEee---------ccceEEE
Confidence 55577887777666677888888998876 665543 22222333 333333 33333332 2346789
Q ss_pred EEcCCC----cEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCceeee-eCC-CCcc
Q 036391 169 YSLKIN----SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQ-LPL-PDSV 242 (389)
Q Consensus 169 yss~~~----~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~-i~~-P~~~ 242 (389)
|++.++ +|+.+..-|... .-+++.-.-++. ++....+.+-|...+.... +.- |...
T Consensus 89 ~~L~tgk~irswKa~He~Pvi~-----------------ma~~~~g~LlAt-ggaD~~v~VWdi~~~~~th~fkG~gGvV 150 (775)
T KOG0319|consen 89 WSLPTGKLIRSWKAIHEAPVIT-----------------MAFDPTGTLLAT-GGADGRVKVWDIKNGYCTHSFKGHGGVV 150 (775)
T ss_pred EEcccchHhHhHhhccCCCeEE-----------------EEEcCCCceEEe-ccccceEEEEEeeCCEEEEEecCCCceE
Confidence 999875 688876656210 111221122222 2233567777776655443 222 2211
Q ss_pred ccCCCceEEEEEEeCCe---EEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEE
Q 036391 243 NVSYANVHVDVGSLEGC---LCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEV 319 (389)
Q Consensus 243 ~~~~~~~~~~l~~~~G~---L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~ 319 (389)
....+++. ..++.+..+..+.+|-+..-. . .++.+. ........+++..|+..++-..
T Consensus 151 ---------ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~---t--cl~~~~-----~H~S~vtsL~~~~d~~~~ls~~ 211 (775)
T KOG0319|consen 151 ---------SSLLFHPHWNRWLLASGATDGTVRVWNLNDKR---T--CLHTMI-----LHKSAVTSLAFSEDSLELLSVG 211 (775)
T ss_pred ---------EEEEeCCccchhheeecCCCceEEEEEcccCc---h--HHHHHH-----hhhhheeeeeeccCCceEEEec
Confidence 11111111 112222233466666666311 1 111111 1112355677777887777666
Q ss_pred cCcEEEEEeCCC
Q 036391 320 RREKLVWFDLET 331 (389)
Q Consensus 320 ~~~~l~~yd~~~ 331 (389)
.+.-+.+||+.+
T Consensus 212 RDkvi~vwd~~~ 223 (775)
T KOG0319|consen 212 RDKVIIVWDLVQ 223 (775)
T ss_pred cCcEEEEeehhh
Confidence 666788899854
No 121
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.36 E-value=60 Score=30.17 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=41.0
Q ss_pred EEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEE
Q 036391 260 LCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 336 (389)
Q Consensus 260 L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~ 336 (389)
=++.....+..+.||.+.-. ..+..+.-. ....+-++|++.|..|+-+-+++.|-+||+++++-.+
T Consensus 305 ~~l~s~SrDktIk~wdv~tg------~cL~tL~gh-----dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTG------MCLFTLVGH-----DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred cEEEeecccceEEEEeccCC------eEEEEEecc-----cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 34444445568999998742 122222211 1235678888877666655566679999999977543
No 122
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=46.06 E-value=2.6e+02 Score=26.25 Aligned_cols=111 Identities=11% Similarity=0.106 Sum_probs=66.6
Q ss_pred eeeECCeEEEEccCCCCCcEEEEEECCCce--eeeeCCC--CccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEee
Q 036391 203 GVLAGGALHWVSPKSSTRSVIMAFNLVAKE--FYQLPLP--DSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKE 278 (389)
Q Consensus 203 ~v~~~G~lywl~~~~~~~~~il~fD~~~e~--~~~i~~P--~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~ 278 (389)
+++.+|.+|..... ..|.+||..+.+ |+.-... .... .-+...+|+|++..... .++.|++
T Consensus 64 ~~~~dg~v~~~~~~----G~i~A~d~~~g~~~W~~~~~~~~~~~~-------~~~~~~~G~i~~g~~~g----~~y~ld~ 128 (370)
T COG1520 64 PADGDGTVYVGTRD----GNIFALNPDTGLVKWSYPLLGAVAQLS-------GPILGSDGKIYVGSWDG----KLYALDA 128 (370)
T ss_pred cEeeCCeEEEecCC----CcEEEEeCCCCcEEecccCcCcceecc-------CceEEeCCeEEEecccc----eEEEEEC
Confidence 58999999997443 479999999866 7654443 1111 11222388876665543 6788887
Q ss_pred CCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEEE
Q 036391 279 HAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 337 (389)
Q Consensus 279 ~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~v 337 (389)
......|.....- . .....+..+ ..+.++....++.++..|.++++..+-
T Consensus 129 ~~G~~~W~~~~~~--~-----~~~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 129 STGTLVWSRNVGG--S-----PYYASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred CCCcEEEEEecCC--C-----eEEecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 4335678655322 0 112223222 234666665567799999998777554
No 123
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=45.09 E-value=4.6e+02 Score=28.92 Aligned_cols=230 Identities=8% Similarity=-0.034 Sum_probs=102.4
Q ss_pred EEeeecceEEEee-CCceEEEEcCCcccccccCCCCCCCCC-------CCceeEEEEeeecCCCCeeEEEEEEEeCCCCC
Q 036391 89 VLGSCNGLIALCN-SVQELALFNPSTRKLKTLPLPPCFVGF-------PSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGE 160 (389)
Q Consensus 89 ~~~s~~GLl~l~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~-------~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~ 160 (389)
.+++.+|-+.+.+ ..+++.++++..+....+...... .. .....-.|+.+|+..+. ++...
T Consensus 574 avd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~-G~~dG~~~~a~f~~P~GIavd~~gn~--LYVaD-------- 642 (1057)
T PLN02919 574 AIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEE-GLRDGSFEDATFNRPQGLAYNAKKNL--LYVAD-------- 642 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCc-CCCCCchhccccCCCcEEEEeCCCCE--EEEEe--------
Confidence 3455678676665 456788999876654444432110 00 01222356666654332 22211
Q ss_pred CceeEEEEEEcCCCcEEEcccCCcccccccc-ccc-ccccccCceeeE---CCeEEEEccCCCCCcEEEEEECCCceeee
Q 036391 161 DVEVEVEVYSLKINSWRRISNLPRFLRDFYD-YLY-HSLFRKGYGVLA---GGALHWVSPKSSTRSVIMAFNLVAKEFYQ 235 (389)
Q Consensus 161 ~~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~-~~~-~~~~~~~~~v~~---~G~lywl~~~~~~~~~il~fD~~~e~~~~ 235 (389)
.....+.+++..++.=+.+...-.......+ ... ........++.+ +|.+|+... ....|..+|..+.....
T Consensus 643 t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~---~~~~I~v~d~~~g~v~~ 719 (1057)
T PLN02919 643 TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA---GQHQIWEYNISDGVTRV 719 (1057)
T ss_pred CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC---CCCeEEEEECCCCeEEE
Confidence 1223566676665533222110000000000 000 000111223443 578887633 34678899988766554
Q ss_pred eCCCCc---ccc------C-CCceEEEEEEe-CC-eEEEEEecCCCeEEEEEEeeCCCCCCeEEEEE--Ec--CCCCC--
Q 036391 236 LPLPDS---VNV------S-YANVHVDVGSL-EG-CLCVFCFYNLVYVDMWMMKEHAVKESWTKLIS--VQ--EPTPT-- 297 (389)
Q Consensus 236 i~~P~~---~~~------~-~~~~~~~l~~~-~G-~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~--i~--~~~~~-- 297 (389)
+..... ... . .... .++.. +| .|+++.... ..+.+|-++..+ ..+.--.. .. ...+-
T Consensus 720 ~~G~G~~~~~~g~~~~~~~~~~P~--GIavspdG~~LYVADs~n-~~Irv~D~~tg~--~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 720 FSGDGYERNLNGSSGTSTSFAQPS--GISLSPDLKELYIADSES-SSIRALDLKTGG--SRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred EecCCccccCCCCccccccccCcc--EEEEeCCCCEEEEEECCC-CeEEEEECCCCc--EEEEEecccccCcccccccCC
Confidence 321100 000 0 0111 23333 44 477766543 377777766421 11110000 00 00000
Q ss_pred -C-----CcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEEE
Q 036391 298 -R-----SFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 337 (389)
Q Consensus 298 -~-----~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~v 337 (389)
+ ......-+++.++|++++-...++++..||++++.+..+
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 0 011122345667776443344456899999999988766
No 124
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=44.94 E-value=1e+02 Score=30.94 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=41.7
Q ss_pred CCcEEEEEECCCceeee----eCCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeC
Q 036391 219 TRSVIMAFNLVAKEFYQ----LPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEH 279 (389)
Q Consensus 219 ~~~~il~fD~~~e~~~~----i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~ 279 (389)
+...|.-||....+|+. +..|.. +.+..+++.-..|..+++...++..+..|.++..
T Consensus 72 E~G~i~l~dt~~~~fr~ee~~lk~~~a----H~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 72 EDGGIILFDTKSIVFRLEERQLKKPLA----HKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred CCCceeeecchhhhcchhhhhhccccc----ccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 44689999999988881 222221 3344556777779999999888889999999974
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=44.78 E-value=2.5e+02 Score=25.67 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=52.3
Q ss_pred CCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCC
Q 036391 219 TRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTR 298 (389)
Q Consensus 219 ~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 298 (389)
-...|..+|+.+..=..+.--.... ..+.-.-+.=+++...-+..+.+|-.-..- .....+..
T Consensus 73 ~dg~vr~~Dln~~~~~~igth~~~i-------~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~------~~~~~d~~---- 135 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGNEDQIGTHDEGI-------RCIEYSYEVGCVISGSWDKTIKFWDPRNKV------VVGTFDQG---- 135 (323)
T ss_pred cCceEEEEEecCCcceeeccCCCce-------EEEEeeccCCeEEEcccCccEEEEeccccc------cccccccC----
Confidence 3468999999887666554332221 122223333344444434478888665310 01111110
Q ss_pred CcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCc
Q 036391 299 SFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS 333 (389)
Q Consensus 299 ~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~ 333 (389)
-...++.-.|+.+++.+.+.+++.||+++..
T Consensus 136 ----kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 136 ----KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ----ceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 1344555567888888888889999998754
No 126
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=44.58 E-value=69 Score=23.34 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=14.0
Q ss_pred CCCcEEEEEECCCceeeee
Q 036391 218 STRSVIMAFNLVAKEFYQL 236 (389)
Q Consensus 218 ~~~~~il~fD~~~e~~~~i 236 (389)
.....++.||+.+.+.+.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVL 52 (89)
T ss_dssp ---EEEEEEETTTTEEEEE
T ss_pred CCCcCEEEEECCCCeEEEe
Confidence 3446899999999988774
No 127
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=44.43 E-value=45 Score=32.49 Aligned_cols=132 Identities=11% Similarity=0.093 Sum_probs=73.1
Q ss_pred ccCceeeECC--eEEEEccCCCCC--cEEEEEECCCceeeeeC----CCCccccCCCceEEEEEEeCCeEEEEEec----
Q 036391 199 RKGYGVLAGG--ALHWVSPKSSTR--SVIMAFNLVAKEFYQLP----LPDSVNVSYANVHVDVGSLEGCLCVFCFY---- 266 (389)
Q Consensus 199 ~~~~~v~~~G--~lywl~~~~~~~--~~il~fD~~~e~~~~i~----~P~~~~~~~~~~~~~l~~~~G~L~~~~~~---- 266 (389)
..+..|+-.| ++|-.++-++.+ .-.-+|+...+.|..+. .|... ...+.-+-+...+|++.+..
T Consensus 262 gGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~R----sCHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 262 GGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGAR----SCHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred CcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcch----hhhhhhhhhhHhHHhhhhhccccc
Confidence 3456788777 888776542111 23567788888999974 34332 12222333445577776532
Q ss_pred C----CCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcc-eeeeEEEEeCCCEEEEEEc---------CcEEEEEeCCCC
Q 036391 267 N----LVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFL-FLRPLGYSRNGVKLLLEVR---------REKLVWFDLETN 332 (389)
Q Consensus 267 ~----~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~-~~~p~~~~~~g~~i~l~~~---------~~~l~~yd~~~~ 332 (389)
. ...-++|+.+- ++..|..+. .+....-++.. +-.-+++..+..+|++... -+.|++||.++.
T Consensus 338 ~r~~~s~RsDfW~FDi--~~~~W~~ls-~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~ 414 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRFDI--DTNTWMLLS-EDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQ 414 (723)
T ss_pred cccccccccceEEEec--CCceeEEec-ccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCc
Confidence 1 22568999996 357897653 22221122211 1233444444333544311 135999999999
Q ss_pred cEEEE
Q 036391 333 SLRTV 337 (389)
Q Consensus 333 ~~~~v 337 (389)
.|+.+
T Consensus 415 ~w~~l 419 (723)
T KOG2437|consen 415 TWKLL 419 (723)
T ss_pred cHHHH
Confidence 88855
No 128
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=43.87 E-value=2.5e+02 Score=25.46 Aligned_cols=101 Identities=13% Similarity=0.008 Sum_probs=53.6
Q ss_pred EEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcc
Q 036391 222 VIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFL 301 (389)
Q Consensus 222 ~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 301 (389)
.|..||.++-.++.+++|.... ..+..--+..-.|.|.+........ +|+-+. .=.+++..+ .+ .
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a--~~nlet~vfD~~G~lWFt~q~G~yG----rLdPa~---~~i~vfpaP----qG--~ 189 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHA--DANLETAVFDPWGNLWFTGQIGAYG----RLDPAR---NVISVFPAP----QG--G 189 (353)
T ss_pred eeEEecCcccceEEeecccccC--CCcccceeeCCCccEEEeeccccce----ecCccc---CceeeeccC----CC--C
Confidence 8999999999999999997654 2332212223355665554322100 222211 001122111 11 1
Q ss_pred eeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEEE
Q 036391 302 FLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 337 (389)
Q Consensus 302 ~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~v 337 (389)
...-+|+.+||++-+-...++.+...|+.+..-+.+
T Consensus 190 gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~ 225 (353)
T COG4257 190 GPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVV 225 (353)
T ss_pred CCcceEECCCCcEEEEeccccceEEcccccCCccee
Confidence 123356667876555444455577778777765555
No 129
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=43.60 E-value=26 Score=31.10 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=31.0
Q ss_pred CCCCCcHHHHHHHHhcCC-ccchhhhcccchhhhhhhCCHHH
Q 036391 1 MSKKIPLDIIADIFCRQP-VKSLLRFRCVSKTCCSLIDSQDF 41 (389)
Q Consensus 1 ~~~~LP~Dll~~IL~rLP-~ksl~r~r~VcK~W~~li~s~~F 41 (389)
++.+||.+++.+||.||| -.+|..+..|--.-..++++..-
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~i 242 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRI 242 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHH
Confidence 356899999999999999 77888777776555555555443
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=42.84 E-value=3.4e+02 Score=26.73 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=26.2
Q ss_pred eeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEEEEE
Q 036391 303 LRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKI 339 (389)
Q Consensus 303 ~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~v~~ 339 (389)
..-.+|++.| .|.+.+..++.++.|.+++.+-.+..
T Consensus 410 ~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~ 445 (626)
T KOG2106|consen 410 AECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT 445 (626)
T ss_pred eeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe
Confidence 3456777766 67777777788888888877776655
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=42.69 E-value=3.9e+02 Score=27.37 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=50.5
Q ss_pred cEEEEEECCCceeeeeCCCCccccCCCceEEEEE-EeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCC
Q 036391 221 SVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVG-SLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRS 299 (389)
Q Consensus 221 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~-~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~ 299 (389)
..|.--|+..|....+-.. .++-..+. ..++.+.+.++.+. +++||.-++ .+..|.++..
T Consensus 200 g~Ir~w~~~ge~l~~~~gh-------tn~vYsis~~~~~~~Ivs~gEDr-tlriW~~~e--------~~q~I~lPtt--- 260 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEMHGH-------TNFVYSISMALSDGLIVSTGEDR-TLRIWKKDE--------CVQVITLPTT--- 260 (745)
T ss_pred ceEEEEeccCceeeeeecc-------ceEEEEEEecCCCCeEEEecCCc-eEEEeecCc--------eEEEEecCcc---
Confidence 4566666666655554332 23333444 55777777776644 999998774 3445555432
Q ss_pred cceeeeEEEEeCCCEEEEEEcCcEEEEEeCC
Q 036391 300 FLFLRPLGYSRNGVKLLLEVRREKLVWFDLE 330 (389)
Q Consensus 300 ~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~ 330 (389)
..+-..+..|||+++ ...++.+.+|-.+
T Consensus 261 --siWsa~~L~NgDIvv-g~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 261 --SIWSAKVLLNGDIVV-GGSDGRVRVFTVD 288 (745)
T ss_pred --ceEEEEEeeCCCEEE-eccCceEEEEEec
Confidence 145566677887554 4445556655444
No 132
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=42.64 E-value=2.7e+02 Score=25.41 Aligned_cols=181 Identities=10% Similarity=0.102 Sum_probs=89.4
Q ss_pred CceEEEEcCCcccccc-cCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcc-
Q 036391 103 VQELALFNPSTRKLKT-LPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRIS- 180 (389)
Q Consensus 103 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~- 180 (389)
++.++|||-.|..-.. +|.+. .....-+|.|+.+ | |+-. .....+-||++.+..=+...
T Consensus 76 DGklIvWDs~TtnK~haipl~s--------~WVMtCA~sPSg~-~--VAcG--------GLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPS--------SWVMTCAYSPSGN-F--VACG--------GLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred CCeEEEEEcccccceeEEecCc--------eeEEEEEECCCCC-e--EEec--------CcCceeEEEecccccccccce
Confidence 4456888888754443 44332 2334455666542 2 2211 14457889998754211111
Q ss_pred ---cCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCceeee-eCCCCccccCCCceEEEEEEe
Q 036391 181 ---NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQ-LPLPDSVNVSYANVHVDVGSL 256 (389)
Q Consensus 181 ---~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~-i~~P~~~~~~~~~~~~~l~~~ 256 (389)
.++ .+.. ....+-+++ --|-++.. ...-..-.|+++.+-.. +.-.. .+-+.+.|...
T Consensus 137 v~r~l~----------gHtg-ylScC~f~d-D~~ilT~S--GD~TCalWDie~g~~~~~f~GH~-----gDV~slsl~p~ 197 (343)
T KOG0286|consen 137 VSRELA----------GHTG-YLSCCRFLD-DNHILTGS--GDMTCALWDIETGQQTQVFHGHT-----GDVMSLSLSPS 197 (343)
T ss_pred eeeeec----------Cccc-eeEEEEEcC-CCceEecC--CCceEEEEEcccceEEEEecCCc-----ccEEEEecCCC
Confidence 122 1111 112233444 22333332 22334445666544322 22111 12233455555
Q ss_pred CCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCc
Q 036391 257 EGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS 333 (389)
Q Consensus 257 ~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~ 333 (389)
++..++.+..+. .-.+|-+.+.. -+..+.-. -.....+.|+++|.-+.-+.++...-.||++++.
T Consensus 198 ~~ntFvSg~cD~-~aklWD~R~~~------c~qtF~gh-----esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 198 DGNTFVSGGCDK-SAKLWDVRSGQ------CVQTFEGH-----ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred CCCeEEeccccc-ceeeeeccCcc------eeEeeccc-----ccccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence 778888776654 67788877522 11122211 1124567888888776665555567778888754
No 133
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.56 E-value=1.5e+02 Score=31.26 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=45.8
Q ss_pred EEEeCCeEEE-EEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCC
Q 036391 253 VGSLEGCLCV-FCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLET 331 (389)
Q Consensus 253 l~~~~G~L~~-~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~ 331 (389)
-+...+.|=+ +.+.+++.+.+|+|.+ +..|+.-- . .+......-+-|+++-+.|+-...++.+-+||+..
T Consensus 211 waAfhpTlpliVSG~DDRqVKlWrmne---tKaWEvDt-c-----rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 211 WAAFHPTLPLIVSGADDRQVKLWRMNE---TKAWEVDT-C-----RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred eEEecCCcceEEecCCcceeeEEEecc---ccceeehh-h-----hcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 3455555433 3334455899999998 45796532 1 22223456677787767777666666788999987
Q ss_pred CcE
Q 036391 332 NSL 334 (389)
Q Consensus 332 ~~~ 334 (389)
++-
T Consensus 282 Rt~ 284 (1202)
T KOG0292|consen 282 RTS 284 (1202)
T ss_pred ccc
Confidence 653
No 134
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=42.41 E-value=2.1e+02 Score=27.92 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEE
Q 036391 257 EGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 336 (389)
Q Consensus 257 ~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~ 336 (389)
+|+ +++....+..+.||.+++.+ ..+.++.-..-. ..-++|++.|..|+-+..++.+.++|.++++...
T Consensus 214 d~~-~l~s~s~D~tiriwd~~~~~-----~~~~~l~gH~~~-----v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 214 DGS-YLLSGSDDKTLRIWDLKDDG-----RNLKTLKGHSTY-----VTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR 282 (456)
T ss_pred CCc-EEEEecCCceEEEeeccCCC-----eEEEEecCCCCc-----eEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE
Q ss_pred E
Q 036391 337 V 337 (389)
Q Consensus 337 v 337 (389)
.
T Consensus 283 ~ 283 (456)
T KOG0266|consen 283 K 283 (456)
T ss_pred e
No 135
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=42.13 E-value=2.6e+02 Score=25.16 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=49.9
Q ss_pred CeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEEE
Q 036391 258 GCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 337 (389)
Q Consensus 258 G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~v 337 (389)
|.+...+.. +..+.||.+.. + .+|+.+..++-.. .+..+-++..+.|..+....-+..+..|--..++++.+
T Consensus 27 g~ilAscg~-Dk~vriw~~~~-~--~s~~ck~vld~~h----krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv 98 (312)
T KOG0645|consen 27 GVILASCGT-DKAVRIWSTSS-G--DSWTCKTVLDDGH----KRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECV 98 (312)
T ss_pred ceEEEeecC-CceEEEEecCC-C--CcEEEEEeccccc----hheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEE
Confidence 444444433 44899999997 2 5799998876432 23467778877776444443344577777777778777
Q ss_pred EEecCCCC
Q 036391 338 KIDTHGLD 345 (389)
Q Consensus 338 ~~~~~g~~ 345 (389)
... +|..
T Consensus 99 ~~l-EGHE 105 (312)
T KOG0645|consen 99 ATL-EGHE 105 (312)
T ss_pred eee-eccc
Confidence 332 5544
No 136
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=41.26 E-value=3.4e+02 Score=26.26 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=39.8
Q ss_pred EEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc
Q 036391 251 VDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR 320 (389)
Q Consensus 251 ~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~ 320 (389)
-.|+++.|.=.++.......+.+|...+. -..-..++.+++.. +..-+++..+|..|+....
T Consensus 384 tsla~i~~sdL~asGS~~G~vrLW~i~~g--~r~i~~l~~ls~~G------fVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 384 TSLAVIPGSDLLASGSWSGCVRLWKIEDG--LRAINLLYSLSLVG------FVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred eeeEecccCceEEecCCCCceEEEEecCC--ccccceeeeccccc------EEEEEEEccCCCEEEEecc
Confidence 36777766655555555569999999972 23345555555433 4566777778887776643
No 137
>PTZ00420 coronin; Provisional
Probab=41.15 E-value=2.2e+02 Score=28.76 Aligned_cols=56 Identities=14% Similarity=0.287 Sum_probs=35.7
Q ss_pred CCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEE
Q 036391 268 LVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 335 (389)
Q Consensus 268 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~ 335 (389)
+..+.||-+.... ....+.... ...-+.++++|..+.....++.+.+||+++++..
T Consensus 147 DgtIrIWDl~tg~------~~~~i~~~~------~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 147 DSFVNIWDIENEK------RAFQINMPK------KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred CCeEEEEECCCCc------EEEEEecCC------cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 4478899887421 223332211 2445677788887766666678999999987653
No 138
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=41.11 E-value=3.6e+02 Score=26.55 Aligned_cols=32 Identities=13% Similarity=0.315 Sum_probs=23.6
Q ss_pred cCceeeECCeEEEEccCCCCCcEEEEEECCCc--eeee
Q 036391 200 KGYGVLAGGALHWVSPKSSTRSVIMAFNLVAK--EFYQ 235 (389)
Q Consensus 200 ~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e--~~~~ 235 (389)
...++..+|.+|..... ..+.++|..+. .|+.
T Consensus 54 ~~sPvv~~g~vy~~~~~----g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 54 EGTPLVVDGDMYFTTSH----SALFALDAATGKVLWRY 87 (488)
T ss_pred ccCCEEECCEEEEeCCC----CcEEEEECCCChhhcee
Confidence 34578999999986543 57999999764 5665
No 139
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=40.01 E-value=2.3e+02 Score=24.01 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=50.5
Q ss_pred CcEEEEEECCCcee-eeeCCCCccccCCCceEEEEEEeC-CeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCC
Q 036391 220 RSVIMAFNLVAKEF-YQLPLPDSVNVSYANVHVDVGSLE-GCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPT 297 (389)
Q Consensus 220 ~~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~~l~~~~-G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~ 297 (389)
...+..+|+.+.+. ..+..... .. ..+.... +.+.++.. ....+.+|.+.... ....+....
T Consensus 114 ~~~i~~~~~~~~~~~~~~~~~~~------~i-~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~------~~~~~~~~~-- 177 (289)
T cd00200 114 DKTIKVWDVETGKCLTTLRGHTD------WV-NSVAFSPDGTFVASSS-QDGTIKLWDLRTGK------CVATLTGHT-- 177 (289)
T ss_pred CCeEEEEECCCcEEEEEeccCCC------cE-EEEEEcCcCCEEEEEc-CCCcEEEEEccccc------cceeEecCc--
Confidence 35788899885443 22331111 11 1233332 45444433 23478888876321 122222111
Q ss_pred CCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEE
Q 036391 298 RSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 335 (389)
Q Consensus 298 ~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~ 335 (389)
....-+.+.+++..+++...++.+..||+++++..
T Consensus 178 ---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 178 ---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred ---cccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 12344566677767777766677999999875543
No 140
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.89 E-value=61 Score=33.20 Aligned_cols=56 Identities=20% Similarity=0.396 Sum_probs=42.5
Q ss_pred CeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEE
Q 036391 269 VYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 336 (389)
Q Consensus 269 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~ 336 (389)
..++||-+.+..+ --|..+.. ...-+++.+||+-.++++..+....|+....++..
T Consensus 432 ~KvRiWsI~d~~V-v~W~Dl~~-----------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 432 GKVRLWSISDKKV-VDWNDLRD-----------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred cceEEeecCcCee-Eeehhhhh-----------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 4889999887543 34765541 24678889999999999888889999999988763
No 141
>PRK04922 tolB translocation protein TolB; Provisional
Probab=39.10 E-value=3.6e+02 Score=25.96 Aligned_cols=144 Identities=14% Similarity=0.129 Sum_probs=75.0
Q ss_pred eEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCe-EEEEccCCCCCcEEEEEECCCceeeeeCCCCcc
Q 036391 164 VEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSV 242 (389)
Q Consensus 164 ~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 242 (389)
..+.+++..++.-+.+...+. . .......-+|. +++.... .....|..+|+.+.....+.--...
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g----------~---~~~~~~SpDG~~l~~~~s~-~g~~~Iy~~d~~~g~~~~lt~~~~~ 293 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG----------I---NGAPSFSPDGRRLALTLSR-DGNPEIYVMDLGSRQLTRLTNHFGI 293 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC----------C---ccCceECCCCCEEEEEEeC-CCCceEEEEECCCCCeEECccCCCC
Confidence 457778888887766654331 0 01112233453 4443332 2235788899988776554211111
Q ss_pred ccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC-
Q 036391 243 NVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR- 321 (389)
Q Consensus 243 ~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~- 321 (389)
. ..... .-+|+-.++.........||.++-.+ ....++. ... . ......++++|+.|++....
T Consensus 294 ~-----~~~~~-spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~lt---~~g---~--~~~~~~~SpDG~~Ia~~~~~~ 357 (433)
T PRK04922 294 D-----TEPTW-APDGKSIYFTSDRGGRPQIYRVAASG--GSAERLT---FQG---N--YNARASVSPDGKKIAMVHGSG 357 (433)
T ss_pred c-----cceEE-CCCCCEEEEEECCCCCceEEEEECCC--CCeEEee---cCC---C--CccCEEECCCCCEEEEEECCC
Confidence 0 11122 22555433333333356788886422 3343332 111 0 11234667889888876432
Q ss_pred --cEEEEEeCCCCcEEEE
Q 036391 322 --EKLVWFDLETNSLRTV 337 (389)
Q Consensus 322 --~~l~~yd~~~~~~~~v 337 (389)
..++.+|+.+++.+.+
T Consensus 358 ~~~~I~v~d~~~g~~~~L 375 (433)
T PRK04922 358 GQYRIAVMDLSTGSVRTL 375 (433)
T ss_pred CceeEEEEECCCCCeEEC
Confidence 2599999999988755
No 142
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=37.82 E-value=1.2e+02 Score=27.72 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=41.7
Q ss_pred ecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEEE
Q 036391 265 FYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 337 (389)
Q Consensus 265 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~v 337 (389)
..++..+.||.|.+.. +.+..|..... ..-++++..+.+|-+..+...+-.||+..+.+-.+
T Consensus 374 gSDDrTvKvWdLrNMR-----splATIRtdS~------~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl 435 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMR-----SPLATIRTDSP------ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL 435 (481)
T ss_pred cCCCceEEEeeecccc-----CcceeeecCCc------cceeEeecCCceEEeccCCceEEEEecCCCccccC
Confidence 3445589999998732 23555655432 23356665555777777777899999999887766
No 143
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=37.54 E-value=3.1e+02 Score=28.28 Aligned_cols=102 Identities=10% Similarity=0.195 Sum_probs=53.2
Q ss_pred cEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCc
Q 036391 221 SVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSF 300 (389)
Q Consensus 221 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 300 (389)
..|...|+.+.+-. +|.......+.......+.++...+.. .+...+.+|.++...-..+|.-.|.-+
T Consensus 40 d~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a-~rs~llrv~~L~tgk~irswKa~He~P-------- 107 (775)
T KOG0319|consen 40 DRVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTA-SRSQLLRVWSLPTGKLIRSWKAIHEAP-------- 107 (775)
T ss_pred ceEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEe-eccceEEEEEcccchHhHhHhhccCCC--------
Confidence 36888888887765 333221101122222333344433333 334489999999743345675444222
Q ss_pred ceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEE
Q 036391 301 LFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRT 336 (389)
Q Consensus 301 ~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~ 336 (389)
.-.+.+.+.|..+--...++.+-++|.+.+....
T Consensus 108 --vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 108 --VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred --eEEEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 2345666655322222234568888887776543
No 144
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=37.41 E-value=3.1e+02 Score=24.63 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=76.6
Q ss_pred ceeEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCC-ceeeeeCCCC
Q 036391 162 VEVEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVA-KEFYQLPLPD 240 (389)
Q Consensus 162 ~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~-e~~~~i~~P~ 240 (389)
....+..|++.+++=.....+|. .......+.+++.+|-++.. ....+.||..+ +.-..++.|.
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~------------~~FgEGit~~~d~l~qLTWk---~~~~f~yd~~tl~~~~~~~y~~ 130 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPP------------RYFGEGITILGDKLYQLTWK---EGTGFVYDPNTLKKIGTFPYPG 130 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TT------------T--EEEEEEETTEEEEEESS---SSEEEEEETTTTEEEEEEE-SS
T ss_pred CcEEEEEEECCCCcEEEEEECCc------------cccceeEEEECCEEEEEEec---CCeEEEEccccceEEEEEecCC
Confidence 46788899999987554444551 11223356789999999886 35789999975 2333455553
Q ss_pred ccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc
Q 036391 241 SVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR 320 (389)
Q Consensus 241 ~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~ 320 (389)
.++ .|+..+..|.+..+.. .|+.++. +......+|....--.+.....-+=+. +| .|+-...
T Consensus 131 ------EGW--GLt~dg~~Li~SDGS~----~L~~~dP----~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~IyANVW 192 (264)
T PF05096_consen 131 ------EGW--GLTSDGKRLIMSDGSS----RLYFLDP----ETFKEVRTIQVTDNGRPVSNLNELEYI-NG-KIYANVW 192 (264)
T ss_dssp ------S----EEEECSSCEEEE-SSS----EEEEE-T----TT-SEEEEEE-EETTEE---EEEEEEE-TT-EEEEEET
T ss_pred ------cce--EEEcCCCEEEEECCcc----ceEEECC----cccceEEEEEEEECCEECCCcEeEEEE-cC-EEEEEeC
Confidence 233 4566666666665533 2555553 234455555543211111111111111 44 5666544
Q ss_pred -CcEEEEEeCCCCcEEEE
Q 036391 321 -REKLVWFDLETNSLRTV 337 (389)
Q Consensus 321 -~~~l~~yd~~~~~~~~v 337 (389)
...++..|++|+++...
T Consensus 193 ~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp TSSEEEEEETTT-BEEEE
T ss_pred CCCeEEEEeCCCCeEEEE
Confidence 45799999999998765
No 145
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=36.96 E-value=1.2e+02 Score=27.61 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=45.4
Q ss_pred ceeEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCceeeeeCC
Q 036391 162 VEVEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQLPL 238 (389)
Q Consensus 162 ~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~ 238 (389)
....+++|+..+.+|...+.--... ...+......-+++.|.+-.-. .....+..||+.+.+|..+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~------V~~l~~~~~~~Llv~G~ft~~~---~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGT------VTDLQWASNNQLLVGGNFTLNG---TNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEE------EEEEEEecCCEEEEEEeeEECC---CCceeEEEEecCCCeeeecCC
Confidence 3567899999999999886322100 0122223455677777766432 245789999999999988755
No 146
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=36.92 E-value=3.6e+02 Score=25.35 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=42.5
Q ss_pred EEEeCCeEEEEEecCC--CeEEEEEEeeCCC-CCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEE----------
Q 036391 253 VGSLEGCLCVFCFYNL--VYVDMWMMKEHAV-KESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEV---------- 319 (389)
Q Consensus 253 l~~~~G~L~~~~~~~~--~~l~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~---------- 319 (389)
....+|.++++..... .....|.+...+. ++.|..- ...|++++++|+.+|+..
T Consensus 210 ~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~-------------g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 210 WPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG-------------GWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred EEecCCeEEEEecCCCcceecceeeeccccccccccCCC-------------cceeEEEcCCCCEEEEEecCCccccccC
Confidence 3444588888764332 2445565543321 2234211 246799999998888842
Q ss_pred cCcEEEEEeCCCCcEEE
Q 036391 320 RREKLVWFDLETNSLRT 336 (389)
Q Consensus 320 ~~~~l~~yd~~~~~~~~ 336 (389)
.++.+.++|.++++...
T Consensus 277 ~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 277 ASRFLFVVDAKTGKRLR 293 (352)
T ss_pred CCCEEEEEECCCCeEEE
Confidence 12479999999987653
No 147
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=35.44 E-value=37 Score=24.36 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.7
Q ss_pred cEEEEEeCCCCcEEEEEE
Q 036391 322 EKLVWFDLETNSLRTVKI 339 (389)
Q Consensus 322 ~~l~~yd~~~~~~~~v~~ 339 (389)
..+.+||++.+.|+.+.+
T Consensus 49 ~s~~yfDve~~~WRSFk~ 66 (83)
T PF10902_consen 49 TSVRYFDVEKKGWRSFKI 66 (83)
T ss_pred ceEEEEEeccCceeeeeh
Confidence 358899999999999977
No 148
>PTZ00421 coronin; Provisional
Probab=33.99 E-value=3.6e+02 Score=26.77 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=36.0
Q ss_pred CCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcE
Q 036391 268 LVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSL 334 (389)
Q Consensus 268 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~ 334 (389)
+..+.||-++.. .....+.... ....-+.++++|..++....++.+.+||+++++.
T Consensus 147 DgtVrIWDl~tg------~~~~~l~~h~-----~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 147 DMVVNVWDVERG------KAVEVIKCHS-----DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred CCEEEEEECCCC------eEEEEEcCCC-----CceEEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 447899988741 1233333211 1245567778888777776677899999998764
No 149
>PRK05137 tolB translocation protein TolB; Provisional
Probab=33.55 E-value=4.4e+02 Score=25.35 Aligned_cols=188 Identities=10% Similarity=0.070 Sum_probs=93.0
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCC
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
.++++++.-++..+.|-.... ......+.|..+ +++.+.. .. ....+.+++..++..+.+...+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~--------~v~~p~wSpDG~--~lay~s~-~~-----g~~~i~~~dl~~g~~~~l~~~~ 245 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSS--------LVLTPRFSPNRQ--EITYMSY-AN-----GRPRVYLLDLETGQRELVGNFP 245 (435)
T ss_pred eEEEEECCCCCCcEEEecCCC--------CeEeeEECCCCC--EEEEEEe-cC-----CCCEEEEEECCCCcEEEeecCC
Confidence 478888886665555543321 122344444322 2332221 11 2357788899888887765444
Q ss_pred cccccccccccccccccCceeeECCe-EEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEE
Q 036391 184 RFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCV 262 (389)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~ 262 (389)
. . .......-+|. +.+.... .....|..+|+.+.....+.--.... . .... .-+|+-.+
T Consensus 246 g----------~---~~~~~~SPDG~~la~~~~~-~g~~~Iy~~d~~~~~~~~Lt~~~~~~---~--~~~~-spDG~~i~ 305 (435)
T PRK05137 246 G----------M---TFAPRFSPDGRKVVMSLSQ-GGNTDIYTMDLRSGTTTRLTDSPAID---T--SPSY-SPDGSQIV 305 (435)
T ss_pred C----------c---ccCcEECCCCCEEEEEEec-CCCceEEEEECCCCceEEccCCCCcc---C--ceeE-cCCCCEEE
Confidence 1 0 11112233553 3333322 23356888899887766553211111 0 1111 22554333
Q ss_pred EEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC---cEEEEEeCCCCcEEEE
Q 036391 263 FCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 337 (389)
Q Consensus 263 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~---~~l~~yd~~~~~~~~v 337 (389)
+........+||+++-.+ .....+. ... ..... ..++++|+.|++.... .+++.+|+.++..+.+
T Consensus 306 f~s~~~g~~~Iy~~d~~g--~~~~~lt---~~~----~~~~~-~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 306 FESDRSGSPQLYVMNADG--SNPRRIS---FGG----GRYST-PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL 373 (435)
T ss_pred EEECCCCCCeEEEEECCC--CCeEEee---cCC----CcccC-eEECCCCCEEEEEEcCCCceEEEEEECCCCceEec
Confidence 333333356788887432 2222222 110 01122 3466788888876432 3689999988776554
No 150
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=32.95 E-value=4.3e+02 Score=24.99 Aligned_cols=187 Identities=14% Similarity=0.106 Sum_probs=90.2
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCC
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
..++++|..|++...+..... . ..+..+.|..+. ++.... . .....+.+++.+++..+.+....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~------~--~~~~~~spDg~~--l~~~~~---~---~~~~~i~~~d~~~~~~~~l~~~~ 277 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG------M--NGAPAFSPDGSK--LAVSLS---K---DGNPDIYVMDLDGKQLTRLTNGP 277 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC------C--ccceEECCCCCE--EEEEEC---C---CCCccEEEEECCCCCEEECCCCC
Confidence 478999999887666543321 1 112344544322 221111 0 12345677888888776664322
Q ss_pred cccccccccccccccccCceeeECCe-EEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEE
Q 036391 184 RFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCV 262 (389)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~ 262 (389)
. . .......-+|. +++.... .....|..+|+.+.....+....... .... ..-+|+..+
T Consensus 278 ~-----------~--~~~~~~s~dg~~l~~~s~~-~g~~~iy~~d~~~~~~~~l~~~~~~~-----~~~~-~spdg~~i~ 337 (417)
T TIGR02800 278 G-----------I--DTEPSWSPDGKSIAFTSDR-GGSPQIYMMDADGGEVRRLTFRGGYN-----ASPS-WSPDGDLIA 337 (417)
T ss_pred C-----------C--CCCEEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCc-----cCeE-ECCCCCEEE
Confidence 0 0 00111122553 5554432 22347888898877766654322111 1111 223566555
Q ss_pred EEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC---cEEEEEeCCCCcEEEE
Q 036391 263 FCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNSLRTV 337 (389)
Q Consensus 263 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~---~~l~~yd~~~~~~~~v 337 (389)
+.........|+.++-.+ .|.+.. ..... ... ..+.+||..|++.... ..++.++...+..+.+
T Consensus 338 ~~~~~~~~~~i~~~d~~~---~~~~~l--~~~~~-----~~~-p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDG---GGERVL--TDTGL-----DES-PSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred EEEccCCceEEEEEeCCC---CCeEEc--cCCCC-----CCC-ceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 554433456777776422 232221 11110 112 2566788877776442 2366666666555444
No 151
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=32.87 E-value=98 Score=17.55 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=25.0
Q ss_pred eEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEe
Q 036391 285 WTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFD 328 (389)
Q Consensus 285 W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd 328 (389)
|..+..+.... ....-+++++++..++-...++.+.+||
T Consensus 1 g~~~~~~~~h~-----~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHS-----SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSS-----SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCC-----CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45555555432 1245677788887777777777788776
No 152
>PTZ00421 coronin; Provisional
Probab=32.63 E-value=5e+02 Score=25.71 Aligned_cols=113 Identities=10% Similarity=0.098 Sum_probs=54.4
Q ss_pred CCeEEEEccCCCCCcEEEEEECCCceee-eeCCCCccccCCCceEEEEEEeC-CeEEEEEec--CCCeEEEEEEeeCCCC
Q 036391 207 GGALHWVSPKSSTRSVIMAFNLVAKEFY-QLPLPDSVNVSYANVHVDVGSLE-GCLCVFCFY--NLVYVDMWMMKEHAVK 282 (389)
Q Consensus 207 ~G~lywl~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~~l~~~~-G~L~~~~~~--~~~~l~iW~l~~~~~~ 282 (389)
+|.+...++ ....|-.+|+.+.+.. .+....... ....+...+ +.+..++.. .+..+.+|-+....
T Consensus 179 dG~lLatgs---~Dg~IrIwD~rsg~~v~tl~~H~~~~-----~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-- 248 (493)
T PTZ00421 179 DGSLLCTTS---KDKKLNIIDPRDGTIVSSVEAHASAK-----SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-- 248 (493)
T ss_pred CCCEEEEec---CCCEEEEEECCCCcEEEEEecCCCCc-----ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC--
Confidence 465444333 2357888999876532 222221110 011122223 333333332 24589999887532
Q ss_pred CCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc-CcEEEEEeCCCCcEEE
Q 036391 283 ESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR-REKLVWFDLETNSLRT 336 (389)
Q Consensus 283 ~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~-~~~l~~yd~~~~~~~~ 336 (389)
... ..+...... ......+.+++..+++... ++.+.+||+.+++...
T Consensus 249 ~p~---~~~~~d~~~----~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 249 SPY---STVDLDQSS----ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred Cce---eEeccCCCC----ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 111 112211100 1122234567777777653 5678888988877544
No 153
>PRK04043 tolB translocation protein TolB; Provisional
Probab=32.32 E-value=4.7e+02 Score=25.24 Aligned_cols=186 Identities=12% Similarity=0.085 Sum_probs=100.6
Q ss_pred CceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccC
Q 036391 103 VQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNL 182 (389)
Q Consensus 103 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~ 182 (389)
...+++.|..|++-..|-..+. ... ...+.|. .=+++..... .....+.+++..++.++.+...
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g------~~~--~~~~SPD--G~~la~~~~~------~g~~~Iy~~dl~~g~~~~LT~~ 275 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQG------MLV--VSDVSKD--GSKLLLTMAP------KGQPDIYLYDTNTKTLTQITNY 275 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCC------cEE--eeEECCC--CCEEEEEEcc------CCCcEEEEEECCCCcEEEcccC
Confidence 3579999999998888764331 111 1223332 2223322221 1235778889889999988654
Q ss_pred CcccccccccccccccccCceeeECC-eEEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCe-E
Q 036391 183 PRFLRDFYDYLYHSLFRKGYGVLAGG-ALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGC-L 260 (389)
Q Consensus 183 p~~~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~-L 260 (389)
+. ........-+| .+|+.... .....|...|+.+...+.+..-... ... ..-+|+ |
T Consensus 276 ~~-------------~d~~p~~SPDG~~I~F~Sdr-~g~~~Iy~~dl~~g~~~rlt~~g~~-------~~~-~SPDG~~I 333 (419)
T PRK04043 276 PG-------------IDVNGNFVEDDKRIVFVSDR-LGYPNIFMKKLNSGSVEQVVFHGKN-------NSS-VSTYKNYI 333 (419)
T ss_pred CC-------------ccCccEECCCCCEEEEEECC-CCCceEEEEECCCCCeEeCccCCCc-------Cce-ECCCCCEE
Confidence 41 01111233356 57776543 3335789999988877665321111 111 223554 4
Q ss_pred EEEEecCC-----CeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC---cEEEEEeCCCC
Q 036391 261 CVFCFYNL-----VYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETN 332 (389)
Q Consensus 261 ~~~~~~~~-----~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~---~~l~~yd~~~~ 332 (389)
.++..... ...+|++++-.+ ..+..+.. .. .... ..+++||+.|++.... ..+..++++.+
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~--g~~~~LT~---~~-----~~~~-p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNS--DYIRRLTA---NG-----VNQF-PRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCC--CCeEECCC---CC-----CcCC-eEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 44433221 237888887432 33443322 11 0122 3567899988887542 24888999887
Q ss_pred cEEEE
Q 036391 333 SLRTV 337 (389)
Q Consensus 333 ~~~~v 337 (389)
.-..+
T Consensus 403 ~~~~l 407 (419)
T PRK04043 403 KSFLF 407 (419)
T ss_pred eeEEe
Confidence 66665
No 154
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=32.20 E-value=1.3e+02 Score=26.47 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=36.9
Q ss_pred eecceEEEeeCCceEEEEcCCccccccc--CCCCCCCCCCCceeEEEEeeecCCCCeeEEE
Q 036391 92 SCNGLIALCNSVQELALFNPSTRKLKTL--PLPPCFVGFPSAFIFYGFGQDKSNDDYKLVR 150 (389)
Q Consensus 92 s~~GLl~l~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~ 150 (389)
..+|.|.--....++|-.||.|+.-..+ .++.. ......++|-|+|..+.-+||.
T Consensus 36 pa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~----al~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLGSTGRLYTINPATGAATPVGASPLTV----ALSGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEeCCCcEEEEECCCCeEEEeecccccc----cccCceEEEecCcccCcEEEEc
Confidence 3456554334577899999999998777 33322 1123377888889888877774
No 155
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=31.78 E-value=7.4e+02 Score=27.39 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=38.5
Q ss_pred eCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCC------CCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeC
Q 036391 256 LEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPT------PTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDL 329 (389)
Q Consensus 256 ~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~------~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~ 329 (389)
.+|.|+++..... .+.+|-.+. .....+.-..... .........-+++.++|.+++-...++.+..+|+
T Consensus 813 ~dG~LYVADs~N~-rIrviD~~t----g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 813 KDGQIYVADSYNH-KIKKLDPAT----KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred CCCcEEEEECCCC-EEEEEECCC----CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 4788877765433 777776653 1111111111000 0111112334666778864433344567889999
Q ss_pred CCCcE
Q 036391 330 ETNSL 334 (389)
Q Consensus 330 ~~~~~ 334 (389)
++++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 99875
No 156
>PRK00178 tolB translocation protein TolB; Provisional
Probab=30.44 E-value=4.9e+02 Score=24.89 Aligned_cols=143 Identities=14% Similarity=0.149 Sum_probs=75.2
Q ss_pred eEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCe-EEEEccCCCCCcEEEEEECCCceeeeeCCCCcc
Q 036391 164 VEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSV 242 (389)
Q Consensus 164 ~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~ 242 (389)
..+.+++..++.-+.+...+. . .......-+|. +++.... .....|..+|+.+.....+.-....
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g----------~---~~~~~~SpDG~~la~~~~~-~g~~~Iy~~d~~~~~~~~lt~~~~~ 288 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG----------L---NGAPAWSPDGSKLAFVLSK-DGNPEIYVMDLASRQLSRVTNHPAI 288 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC----------C---cCCeEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEEcccCCCC
Confidence 467788888887776654331 0 01111223453 4433322 2335788899998877665322211
Q ss_pred ccCCCceEEEEEEeCCe-EEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC
Q 036391 243 NVSYANVHVDVGSLEGC-LCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR 321 (389)
Q Consensus 243 ~~~~~~~~~~l~~~~G~-L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~ 321 (389)
. . .... .-+|+ |++. ........||.++-.+ ..+..+. ... . ......++++|+.|++....
T Consensus 289 ~---~--~~~~-spDg~~i~f~-s~~~g~~~iy~~d~~~--g~~~~lt-~~~-~------~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 289 D---T--EPFW-GKDGRTLYFT-SDRGGKPQIYKVNVNG--GRAERVT-FVG-N------YNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred c---C--CeEE-CCCCCEEEEE-ECCCCCceEEEEECCC--CCEEEee-cCC-C------CccceEECCCCCEEEEEEcc
Confidence 1 0 1111 22554 4444 3333355777776322 3344332 111 0 11234566788888876532
Q ss_pred ---cEEEEEeCCCCcEEEE
Q 036391 322 ---EKLVWFDLETNSLRTV 337 (389)
Q Consensus 322 ---~~l~~yd~~~~~~~~v 337 (389)
..++.+|+.+++.+.+
T Consensus 352 ~~~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 352 DGNFHVAAQDLQRGSVRIL 370 (430)
T ss_pred CCceEEEEEECCCCCEEEc
Confidence 2589999999988766
No 157
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=30.04 E-value=1.7e+02 Score=26.95 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=36.9
Q ss_pred CCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEE-cCcEEEEEeCCC
Q 036391 257 EGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDLET 331 (389)
Q Consensus 257 ~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~-~~~~l~~yd~~~ 331 (389)
+|+ +++...++..+.||.++++...+. +..++.... +...-+.|.+|...+++.. ++.+|.+|-+..
T Consensus 97 dGK-~lat~~~Dr~Ir~w~~~DF~~~eH--r~~R~nve~-----dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 97 DGK-KLATISGDRSIRLWDVRDFENKEH--RCIRQNVEY-----DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred CCc-eeEEEeCCceEEEEecchhhhhhh--hHhhccccC-----CCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 444 233334455899999998764332 222222221 1344567777666666654 345688886543
No 158
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=29.76 E-value=4.4e+02 Score=24.17 Aligned_cols=117 Identities=11% Similarity=0.195 Sum_probs=50.0
Q ss_pred eeeECCeEEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEe-CCeEEEEEecCCCeEEEEEEeeCCC
Q 036391 203 GVLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSL-EGCLCVFCFYNLVYVDMWMMKEHAV 281 (389)
Q Consensus 203 ~v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~l~iW~l~~~~~ 281 (389)
.|.++|.--|+... +..|+.-.=..++|..++++.... ... ..+..+ ++...++... =.|++-.+.|
T Consensus 66 ~I~f~~~~g~ivG~---~g~ll~T~DgG~tW~~v~l~~~lp--gs~--~~i~~l~~~~~~l~~~~----G~iy~T~DgG- 133 (302)
T PF14870_consen 66 SISFDGNEGWIVGE---PGLLLHTTDGGKTWERVPLSSKLP--GSP--FGITALGDGSAELAGDR----GAIYRTTDGG- 133 (302)
T ss_dssp EEEEETTEEEEEEE---TTEEEEESSTTSS-EE----TT-S--S-E--EEEEEEETTEEEEEETT------EEEESSTT-
T ss_pred EEEecCCceEEEcC---CceEEEecCCCCCcEEeecCCCCC--CCe--eEEEEcCCCcEEEEcCC----CcEEEeCCCC-
Confidence 44444433455443 235555555788999998775543 122 223333 5555554322 3477777654
Q ss_pred CCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEEEEE
Q 036391 282 KESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKI 339 (389)
Q Consensus 282 ~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~v~~ 339 (389)
.+|..+..-... ...-+...++|..|.+...+.-+...|+....|+....
T Consensus 134 -~tW~~~~~~~~g-------s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r 183 (302)
T PF14870_consen 134 -KTWQAVVSETSG-------SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR 183 (302)
T ss_dssp -SSEEEEE-S-----------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-
T ss_pred -CCeeEcccCCcc-------eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc
Confidence 689766421111 12222334566555444333334456776666666543
No 159
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=28.52 E-value=2.6e+02 Score=27.48 Aligned_cols=103 Identities=11% Similarity=0.033 Sum_probs=58.2
Q ss_pred CcEEEEEECCCc--eeeeeCCCCccccCCCce-EEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCC
Q 036391 220 RSVIMAFNLVAK--EFYQLPLPDSVNVSYANV-HVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTP 296 (389)
Q Consensus 220 ~~~il~fD~~~e--~~~~i~~P~~~~~~~~~~-~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~ 296 (389)
..+|-+.|+... ++-.-.++.-. .+++ +-....-||+-.++.+. ...+.||-|.-.. - +|... +
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~---rdnyiRSckL~pdgrtLivGGe-astlsiWDLAapT--p------rikae-l 505 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLN---RDNYIRSCKLLPDGRTLIVGGE-ASTLSIWDLAAPT--P------RIKAE-L 505 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccC---cccceeeeEecCCCceEEeccc-cceeeeeeccCCC--c------chhhh-c
Confidence 357777777643 22222444332 1232 22333448887777766 4489999997521 1 11110 0
Q ss_pred CCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEE
Q 036391 297 TRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 335 (389)
Q Consensus 297 ~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~ 335 (389)
......+.-+++++|.++.|-++.++.+.+||+.++.+.
T Consensus 506 tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 506 TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 111113556777888776666677778999999887654
No 160
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=28.45 E-value=3e+02 Score=27.53 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=20.3
Q ss_pred CCEEEEEEcCcEEEEEeCCCCcEEE
Q 036391 312 GVKLLLEVRREKLVWFDLETNSLRT 336 (389)
Q Consensus 312 g~~i~l~~~~~~l~~yd~~~~~~~~ 336 (389)
++.|++...+.+|+++|.+|++..+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEe
Confidence 4578887777789999999988764
No 161
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=28.41 E-value=6e+02 Score=25.25 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=73.5
Q ss_pred EeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcc--cCCcccccccccccccccccCceeeECCeEEEEc
Q 036391 137 FGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRIS--NLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVS 214 (389)
Q Consensus 137 ~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~--~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~ 214 (389)
+....+++.=|++..+...+- ..-.....++++=.|.... ..+ .+++..++++.++.++|.++
T Consensus 207 iY~eKDs~~skmvvyGGM~G~----RLgDLW~Ldl~Tl~W~kp~~~G~~-----------PlPRSLHsa~~IGnKMyvfG 271 (830)
T KOG4152|consen 207 IYTEKDSKKSKMVVYGGMSGC----RLGDLWTLDLDTLTWNKPSLSGVA-----------PLPRSLHSATTIGNKMYVFG 271 (830)
T ss_pred EEEeccCCcceEEEEcccccc----cccceeEEecceeecccccccCCC-----------CCCcccccceeecceeEEec
Confidence 333555666676665543221 1223556777888898764 111 13446677888999999887
Q ss_pred cC----------C------CCCcEEEEEECCCceeeeeCCCCccccC--CCceEEEEEEeCCeEEEEEecCC--------
Q 036391 215 PK----------S------STRSVIMAFNLVAKEFYQLPLPDSVNVS--YANVHVDVGSLEGCLCVFCFYNL-------- 268 (389)
Q Consensus 215 ~~----------~------~~~~~il~fD~~~e~~~~i~~P~~~~~~--~~~~~~~l~~~~G~L~~~~~~~~-------- 268 (389)
+- . .-...+-++|+.+..|..+-+-...+.. ........+..+.+||+-...+.
T Consensus 272 GWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQ 351 (830)
T KOG4152|consen 272 GWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQ 351 (830)
T ss_pred ceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccc
Confidence 43 0 0114688999999999987543222100 00111245667889998876431
Q ss_pred -CeEEEEEEee
Q 036391 269 -VYVDMWMMKE 278 (389)
Q Consensus 269 -~~l~iW~l~~ 278 (389)
..-++|.|+.
T Consensus 352 VCCkDlWyLdT 362 (830)
T KOG4152|consen 352 VCCKDLWYLDT 362 (830)
T ss_pred cchhhhhhhcc
Confidence 1346787764
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=28.36 E-value=1.3e+02 Score=29.46 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=37.2
Q ss_pred CCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEE-cCcEEEEEeCCCCcEE
Q 036391 268 LVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEV-RREKLVWFDLETNSLR 335 (389)
Q Consensus 268 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~-~~~~l~~yd~~~~~~~ 335 (389)
...+.+|-.+...-.-.|.+.|.-+ ++-+||++-.+.|+... .+.+++.||..+++..
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP----------~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAP----------CRGICFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCC----------cCcceecCCccceEEEecccceEEEeeccccccc
Confidence 3478889877543334677776433 45577777555555543 3567999998876654
No 163
>PF13854 Kelch_5: Kelch motif
Probab=28.32 E-value=1.3e+02 Score=17.94 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=21.2
Q ss_pred cccCceeeECCeEEEEccCCC-CC---cEEEEEECCC
Q 036391 198 FRKGYGVLAGGALHWVSPKSS-TR---SVIMAFNLVA 230 (389)
Q Consensus 198 ~~~~~~v~~~G~lywl~~~~~-~~---~~il~fD~~~ 230 (389)
+..++++.+++.+|..++... .. ..+..||+.+
T Consensus 5 R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 5 RYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred ccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 356678889999999987621 11 3455666543
No 164
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=28.21 E-value=5.6e+02 Score=24.80 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=66.8
Q ss_pred eeECCeEEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCC
Q 036391 204 VLAGGALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKE 283 (389)
Q Consensus 204 v~~~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~ 283 (389)
++=+|-|+-.+. ....+-.||+.+.. ..-.+|.+-. ... .+.-.+..-+++...++..+.+|-|-...
T Consensus 355 fHpDgLifgtgt---~d~~vkiwdlks~~-~~a~Fpght~----~vk-~i~FsENGY~Lat~add~~V~lwDLRKl~--- 422 (506)
T KOG0289|consen 355 FHPDGLIFGTGT---PDGVVKIWDLKSQT-NVAKFPGHTG----PVK-AISFSENGYWLATAADDGSVKLWDLRKLK--- 422 (506)
T ss_pred EcCCceEEeccC---CCceEEEEEcCCcc-ccccCCCCCC----cee-EEEeccCceEEEEEecCCeEEEEEehhhc---
Confidence 445677765533 34678889999877 5556666432 211 23333333344444444469999887532
Q ss_pred CeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEEEE
Q 036391 284 SWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVK 338 (389)
Q Consensus 284 ~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~v~ 338 (389)
..-.+.+.... ...-+.|...|..+.+...+-.++.|+-+++.|.++.
T Consensus 423 ---n~kt~~l~~~~----~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 423 ---NFKTIQLDEKK----EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred ---ccceeeccccc----cceeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 11223322211 1345666666766666544446788888899999883
No 165
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=28.04 E-value=4.8e+02 Score=23.96 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=56.4
Q ss_pred cEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCeE--EEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCC
Q 036391 221 SVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGCL--CVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTR 298 (389)
Q Consensus 221 ~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L--~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 298 (389)
..+-.+|+.+++-..+.+..... ..+--.+|-+ |++.+.-+..+..|-+... ..+.+++++.
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pv-------kt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~------~pv~t~~LPe--- 157 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPV-------KTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS------NPVATLQLPE--- 157 (347)
T ss_pred CceEEEEccCCCeeeeeecccce-------eEEEEecCCCcceeEecccccceeecccCCC------Ceeeeeeccc---
Confidence 46888999999888887654432 1222234444 7777665568999988742 2466666642
Q ss_pred CcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEE
Q 036391 299 SFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLR 335 (389)
Q Consensus 299 ~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~ 335 (389)
+..++.-.-...++.+.+..+.+||+++...+
T Consensus 158 -----RvYa~Dv~~pm~vVata~r~i~vynL~n~~te 189 (347)
T KOG0647|consen 158 -----RVYAADVLYPMAVVATAERHIAVYNLENPPTE 189 (347)
T ss_pred -----eeeehhccCceeEEEecCCcEEEEEcCCCcch
Confidence 22233222234555666667888888765443
No 166
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=27.76 E-value=4.3e+02 Score=23.40 Aligned_cols=127 Identities=13% Similarity=0.176 Sum_probs=68.6
Q ss_pred ccCceeeECCeEEEEccCCCCCcEEEEEECCCce-eeeeCCCCccccCC------CceEEEEEEeCCeEEEEEecC--CC
Q 036391 199 RKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKE-FYQLPLPDSVNVSY------ANVHVDVGSLEGCLCVFCFYN--LV 269 (389)
Q Consensus 199 ~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~-~~~i~~P~~~~~~~------~~~~~~l~~~~G~L~~~~~~~--~~ 269 (389)
....-|..+|++|.... ....|+.||+.++. .....+|....... ..-.+.+++.+..|.++-... ..
T Consensus 69 ~gTg~VVynGs~yynk~---~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g 145 (249)
T KOG3545|consen 69 DGTGHVVYNGSLYYNKA---GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAG 145 (249)
T ss_pred cccceEEEcceEEeecc---CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCC
Confidence 34456899999999743 34689999999853 34445665432100 111357788877777765432 33
Q ss_pred eEEEEEEeeC--CCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc----CcEE-EEEeCCCCcEEEEEE
Q 036391 270 YVDMWMMKEH--AVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR----REKL-VWFDLETNSLRTVKI 339 (389)
Q Consensus 270 ~l~iW~l~~~--~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~----~~~l-~~yd~~~~~~~~v~~ 339 (389)
.+.|-.|+.. ..+..|.--. +.... .. +|.-.| +++...+ +..+ ++||..+++-+.+.+
T Consensus 146 ~iv~skLdp~tl~~e~tW~T~~--~k~~~------~~--aF~iCG-vLY~v~S~~~~~~~i~yaydt~~~~~~~~~i 211 (249)
T KOG3545|consen 146 TIVLSKLDPETLEVERTWNTTL--PKRSA------GN--AFMICG-VLYVVHSYNCTHTQISYAYDTTTGTQERIDL 211 (249)
T ss_pred cEEeeccCHHHhheeeeecccc--CCCCc------Cc--eEEEee-eeEEEeccccCCceEEEEEEcCCCceecccc
Confidence 5666777652 1234563221 11110 11 111123 2332211 1223 689999998887765
No 167
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.65 E-value=1.2e+02 Score=28.86 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=39.6
Q ss_pred CCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcE
Q 036391 257 EGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSL 334 (389)
Q Consensus 257 ~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~ 334 (389)
+|.= ++++..+..+..|-+++.. .+.|.-+.. + ...-+++..||+.+++.+.+.++..||.+++.=
T Consensus 323 Dg~~-~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~---~-------~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d 388 (519)
T KOG0293|consen 323 DGFR-FVTGSPDRTIIMWDLDGNI-LGNWEGVRD---P-------KVHDLAITYDGKYVLLVTVDKKIRLYNREARVD 388 (519)
T ss_pred CCce-eEecCCCCcEEEecCCcch-hhccccccc---c-------eeEEEEEcCCCcEEEEEecccceeeechhhhhh
Confidence 4544 4444334588889888643 457865532 1 134466667777777766666677777766443
No 168
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=27.40 E-value=2.6e+02 Score=27.10 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=44.6
Q ss_pred CCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcC---cEEEEEeCCCCc
Q 036391 257 EGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRR---EKLVWFDLETNS 333 (389)
Q Consensus 257 ~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~---~~l~~yd~~~~~ 333 (389)
+|+-.+++..++...+||+++-.+ ...+.+...-.. ...| .+++||..|++..+. ..++.||++++.
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~-~~~~~Lt~~~gi--------~~~P-s~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDG-KNLPRLTNGFGI--------NTSP-SWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCC-CcceecccCCcc--------ccCc-cCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 455444444445689999999765 232321111000 1122 345689999987553 269999999999
Q ss_pred EEEEEE
Q 036391 334 LRTVKI 339 (389)
Q Consensus 334 ~~~v~~ 339 (389)
.+.+..
T Consensus 318 ~~riT~ 323 (425)
T COG0823 318 VTRLTF 323 (425)
T ss_pred eeEeec
Confidence 988855
No 169
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=27.03 E-value=3.8e+02 Score=22.51 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=37.0
Q ss_pred CeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc---CcEEEEEeCCCCc
Q 036391 258 GCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR---REKLVWFDLETNS 333 (389)
Q Consensus 258 G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~---~~~l~~yd~~~~~ 333 (389)
.+++++.......+.+|.++ ..++..++... ...+..+++|..+++... .+.+..||.++.+
T Consensus 72 ~~favi~g~~~~~v~lyd~~-------~~~i~~~~~~~-------~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 72 NEFAVIYGSMPAKVTLYDVK-------GKKIFSFGTQP-------RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred CEEEEEEccCCcccEEEcCc-------ccEeEeecCCC-------ceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 34555544434477788775 23344444321 235677889988888642 2458899998544
No 170
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.89 E-value=5.5e+02 Score=24.36 Aligned_cols=62 Identities=8% Similarity=0.070 Sum_probs=34.3
Q ss_pred eeEEEEEEcCCC--cEEEcccCCcccccccccccccccccCceeeECC--eEEEEccCCCCCcEEEEEECCCce
Q 036391 163 EVEVEVYSLKIN--SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGG--ALHWVSPKSSTRSVIMAFNLVAKE 232 (389)
Q Consensus 163 ~~~~~Vyss~~~--~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G--~lywl~~~~~~~~~il~fD~~~e~ 232 (389)
...++|+++... .|+.-...+..+. ...+.+.....++.| ...+.+.. ..+.+-.||+..++
T Consensus 172 ~n~lkiwdle~~~qiw~aKNvpnD~L~------LrVPvW~tdi~Fl~g~~~~~fat~T--~~hqvR~YDt~~qR 237 (412)
T KOG3881|consen 172 INELKIWDLEQSKQIWSAKNVPNDRLG------LRVPVWITDIRFLEGSPNYKFATIT--RYHQVRLYDTRHQR 237 (412)
T ss_pred ccceeeeecccceeeeeccCCCCcccc------ceeeeeeccceecCCCCCceEEEEe--cceeEEEecCcccC
Confidence 467888888764 6775543332211 123345566778888 44444433 23456667766543
No 171
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=26.26 E-value=6.3e+02 Score=25.11 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=26.4
Q ss_pred eeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEEE
Q 036391 303 LRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTV 337 (389)
Q Consensus 303 ~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~v 337 (389)
..-+++++||..+..+...++++.||.++++.+.-
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~ 524 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN 524 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceecc
Confidence 45578888887666555567899999999887544
No 172
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=25.85 E-value=9.7e+02 Score=26.80 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=35.8
Q ss_pred eEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCc
Q 036391 270 YVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNS 333 (389)
Q Consensus 270 ~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~ 333 (389)
.+..|-.-. .+.-|.+....... ....+++.+.+..+++++..+.+..||++=+.
T Consensus 1174 ~iv~~D~r~--~~~~w~lk~~~~hG-------~vTSi~idp~~~WlviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1174 RIVSWDTRM--RHDAWRLKNQLRHG-------LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred ceEEecchh--hhhHHhhhcCcccc-------ceeEEEecCCceEEEEecCCceEEEEEeecCc
Confidence 555664332 12457666543332 35667888878888888888889999987654
No 173
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=25.74 E-value=2.7e+02 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=24.4
Q ss_pred eeeEEEEeCCCEEEEEEcCcEEEEEeCCCCc
Q 036391 303 LRPLGYSRNGVKLLLEVRREKLVWFDLETNS 333 (389)
Q Consensus 303 ~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~ 333 (389)
...++|.++|-.++.+...++++.||++..+
T Consensus 253 lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 253 LSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cceeeecCCceEEEeecCCceEEEEecccCC
Confidence 4567888898776666667789999999865
No 174
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=25.27 E-value=6.9e+02 Score=24.93 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=80.6
Q ss_pred cceEEEee-----------CCceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCc
Q 036391 94 NGLIALCN-----------SVQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDV 162 (389)
Q Consensus 94 ~GLl~l~~-----------~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~ 162 (389)
.||||+.. ....+++.+-- ++-...|-... .....+-+.+++.+|-||--+ .
T Consensus 230 t~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~-------GPVhdv~W~~s~~EF~VvyGf---------M 292 (566)
T KOG2315|consen 230 TALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKE-------GPVHDVTWSPSGREFAVVYGF---------M 292 (566)
T ss_pred ceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCC-------CCceEEEECCCCCEEEEEEec---------c
Confidence 57888764 12346666544 55555554432 224556677888888887654 3
Q ss_pred eeEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeE--CCeEEEEccCCCCCcEEEEEECCCceeeeeCCCC
Q 036391 163 EVEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA--GGALHWVSPKSSTRSVIMAFNLVAKEFYQLPLPD 240 (389)
Q Consensus 163 ~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~il~fD~~~e~~~~i~~P~ 240 (389)
...+-||+++-+-=-..+.-| .+.+++ +|.+-.+++.+.-+..|..+|+.+ ...|.-+.
T Consensus 293 PAkvtifnlr~~~v~df~egp-----------------RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~ 353 (566)
T KOG2315|consen 293 PAKVTIFNLRGKPVFDFPEGP-----------------RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFK 353 (566)
T ss_pred cceEEEEcCCCCEeEeCCCCC-----------------ccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhccccc
Confidence 457778888765322222212 222332 366666666667778899999988 44444433
Q ss_pred ccccCCCceEEEEEEeCCeEEEEEecC-----CCeEEEEEEe
Q 036391 241 SVNVSYANVHVDVGSLEGCLCVFCFYN-----LVYVDMWMMK 277 (389)
Q Consensus 241 ~~~~~~~~~~~~l~~~~G~L~~~~~~~-----~~~l~iW~l~ 277 (389)
... . ...--.-+|.-++.+... ++.+.||-..
T Consensus 354 a~~----t-t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 354 AAN----T-TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cCC----c-eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 322 1 111222377766665443 3478888644
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=25.26 E-value=8.2e+02 Score=25.76 Aligned_cols=103 Identities=16% Similarity=0.204 Sum_probs=57.3
Q ss_pred EEEEEECCCceeee---eCCCCccccCCCceEEEEEEe--CCeEEEEEecCCCeEEEEEEeeCC----CCCCeEEEEEEc
Q 036391 222 VIMAFNLVAKEFYQ---LPLPDSVNVSYANVHVDVGSL--EGCLCVFCFYNLVYVDMWMMKEHA----VKESWTKLISVQ 292 (389)
Q Consensus 222 ~il~fD~~~e~~~~---i~~P~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~~l~iW~l~~~~----~~~~W~~~~~i~ 292 (389)
..-.||.....|.. |..|.... +.. ...+ --...++....+..+.||++.+.. ....|+....=.
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~-----~va-t~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s 506 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNA-----FVA-TIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS 506 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCce-----eEE-EEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec
Confidence 45567777777765 67776542 111 1111 111122333334489999996542 235798775433
Q ss_pred CCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCC-CcEEE
Q 036391 293 EPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLET-NSLRT 336 (389)
Q Consensus 293 ~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~-~~~~~ 336 (389)
+... .....++..||..+.... ++.+..||..+ ++.+.
T Consensus 507 y~k~-----~i~a~~fs~dGslla~s~-~~~Itiwd~~~~~~l~~ 545 (792)
T KOG1963|consen 507 YHKT-----PITALCFSQDGSLLAVSF-DDTITIWDYDTKNELLC 545 (792)
T ss_pred cccC-----cccchhhcCCCcEEEEec-CCEEEEecCCChhhhhc
Confidence 3211 234457777886555544 55699999998 44443
No 176
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=24.84 E-value=1.8e+02 Score=18.13 Aligned_cols=30 Identities=7% Similarity=0.115 Sum_probs=23.3
Q ss_pred eeeEEEEeCCCEEEEEEcCcEEEEEeCCCC
Q 036391 303 LRPLGYSRNGVKLLLEVRREKLVWFDLETN 332 (389)
Q Consensus 303 ~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~ 332 (389)
...+..++..|+|-+...++.+.+|-+..+
T Consensus 14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 445667788899999888888999988443
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=23.76 E-value=5.7e+02 Score=24.43 Aligned_cols=66 Identities=17% Similarity=0.347 Sum_probs=44.8
Q ss_pred CCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEcCcEEEEEeCCCCcEEEEEEecCCCC
Q 036391 268 LVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLD 345 (389)
Q Consensus 268 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~~~~l~~yd~~~~~~~~v~~~~~g~~ 345 (389)
++.+.||-....+ -+..+..+. ....+.+..||..+.-.+.+.++-++|+++++...-...+.|..
T Consensus 153 Dn~v~iWnv~tge------ali~l~hpd------~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 153 DNTVSIWNVGTGE------ALITLDHPD------MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK 218 (472)
T ss_pred CceEEEEeccCCc------eeeecCCCC------eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence 4488999887522 122344322 35667888899877776777889999999999877655434543
No 178
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.70 E-value=7e+02 Score=24.04 Aligned_cols=112 Identities=13% Similarity=0.029 Sum_probs=55.9
Q ss_pred EEEEEECCCceee-eeCCCCccccCCCceEEEEEEeCCeEEEEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCc
Q 036391 222 VIMAFNLVAKEFY-QLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSF 300 (389)
Q Consensus 222 ~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 300 (389)
.|-.|+.++..-+ .+.. ++.+.-.-..-+|++.++..... ++.+|-++| |..+..-.-.. .
T Consensus 377 ~i~l~~~e~~~dr~lise-------~~~its~~iS~d~k~~LvnL~~q-ei~LWDl~e------~~lv~kY~Ghk-q--- 438 (519)
T KOG0293|consen 377 KIRLYNREARVDRGLISE-------EQPITSFSISKDGKLALVNLQDQ-EIHLWDLEE------NKLVRKYFGHK-Q--- 438 (519)
T ss_pred ceeeechhhhhhhccccc-------cCceeEEEEcCCCcEEEEEcccC-eeEEeecch------hhHHHHhhccc-c---
Confidence 4666666654444 2222 12222223344888888877644 899999986 32221111000 0
Q ss_pred ceeee-EEEEe-CCCEEEEEEcCcEEEEEeCCCCcEEEEEEecCCCC-ceeeEEEEe
Q 036391 301 LFLRP-LGYSR-NGVKLLLEVRREKLVWFDLETNSLRTVKIDTHGLD-FVDTEICMA 354 (389)
Q Consensus 301 ~~~~p-~~~~~-~g~~i~l~~~~~~l~~yd~~~~~~~~v~~~~~g~~-~~~~~~y~~ 354 (389)
..+-. -||.. |...|.-+..+.+++.++..+++.-.+- .|.. ...+..+.|
T Consensus 439 ~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L---sGHs~~vNcVswNP 492 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL---SGHSKTVNCVSWNP 492 (519)
T ss_pred cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee---cCCcceeeEEecCC
Confidence 01112 13332 2233333344568999999988765441 4433 444554443
No 179
>PRK04922 tolB translocation protein TolB; Provisional
Probab=22.69 E-value=6.9e+02 Score=24.01 Aligned_cols=187 Identities=14% Similarity=0.068 Sum_probs=88.9
Q ss_pred ceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEcccCC
Q 036391 104 QELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRISNLP 183 (389)
Q Consensus 104 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~~p 183 (389)
..++++|..+++...+-..+. . .....+.|..+ . ++..... . ....+.+++..++.-+.+....
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g------~--~~~~~~SpDG~-~-l~~~~s~-~-----g~~~Iy~~d~~~g~~~~lt~~~ 291 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG------I--NGAPSFSPDGR-R-LALTLSR-D-----GNPEIYVMDLGSRQLTRLTNHF 291 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC------C--ccCceECCCCC-E-EEEEEeC-C-----CCceEEEEECCCCCeEECccCC
Confidence 468889988887766543321 0 11223333222 2 2222111 1 2246778888887766553221
Q ss_pred cccccccccccccccccCceeeECCe-EEEEccCCCCCcEEEEEECCCceeeeeCCCCccccCCCceEEEEEEeCCe-EE
Q 036391 184 RFLRDFYDYLYHSLFRKGYGVLAGGA-LHWVSPKSSTRSVIMAFNLVAKEFYQLPLPDSVNVSYANVHVDVGSLEGC-LC 261 (389)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~-L~ 261 (389)
. ........-+|. +++.... .....|..+|+.+.....+...... ....... -+|+ |+
T Consensus 292 ~-------------~~~~~~~spDG~~l~f~sd~-~g~~~iy~~dl~~g~~~~lt~~g~~-----~~~~~~S-pDG~~Ia 351 (433)
T PRK04922 292 G-------------IDTEPTWAPDGKSIYFTSDR-GGRPQIYRVAASGGSAERLTFQGNY-----NARASVS-PDGKKIA 351 (433)
T ss_pred C-------------CccceEECCCCCEEEEEECC-CCCceEEEEECCCCCeEEeecCCCC-----ccCEEEC-CCCCEEE
Confidence 0 001112223453 4444322 2234678888887777666432211 1112222 2454 44
Q ss_pred EEEecCCCeEEEEEEeeCCCCCCeEEEEEEcCCCCCCCcceeeeEEEEeCCCEEEEEEc---CcEEEEEeCCCCcEEEEE
Q 036391 262 VFCFYNLVYVDMWMMKEHAVKESWTKLISVQEPTPTRSFLFLRPLGYSRNGVKLLLEVR---REKLVWFDLETNSLRTVK 338 (389)
Q Consensus 262 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~p~~~~~~g~~i~l~~~---~~~l~~yd~~~~~~~~v~ 338 (389)
+... ......||+++-.+ .....+ ..... ...| .+++||..|++... ...|+.+|+.++..+.+.
T Consensus 352 ~~~~-~~~~~~I~v~d~~~--g~~~~L---t~~~~-----~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 352 MVHG-SGGQYRIAVMDLST--GSVRTL---TPGSL-----DESP-SFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred EEEC-CCCceeEEEEECCC--CCeEEC---CCCCC-----CCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence 4433 22244555555321 223222 11111 1222 56778988877644 236999999877666663
No 180
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=21.88 E-value=6.3e+02 Score=23.26 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=49.1
Q ss_pred cEEEcccCCcccccccccccccccccCceeeE-CCeEEEEccC---CCC-CcEEEEEECC-Cceeeee-CCCCccccCCC
Q 036391 175 SWRRISNLPRFLRDFYDYLYHSLFRKGYGVLA-GGALHWVSPK---SST-RSVIMAFNLV-AKEFYQL-PLPDSVNVSYA 247 (389)
Q Consensus 175 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~---~~~-~~~il~fD~~-~e~~~~i-~~P~~~~~~~~ 247 (389)
.|.....++...... ...+.....++|.. ||.|-+-..- ... ..+++.|-.. .+.|..- .+|+. .
T Consensus 101 ~W~~~~~l~~~~~~~---~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~-----g 172 (310)
T PF13859_consen 101 KWGDTKSLPSTSFQS---WKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPA-----G 172 (310)
T ss_dssp EE---EE-GGGS-EE---EEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----T-----T
T ss_pred eeeecccCCchhccc---cceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCC-----C
Confidence 698877655321100 00122234556665 7877665422 233 2567777665 5778763 23322 2
Q ss_pred ceEEEEEEe-CCeEEEEEecCCCeEEEEEEeeCCCCCCeEEE
Q 036391 248 NVHVDVGSL-EGCLCVFCFYNLVYVDMWMMKEHAVKESWTKL 288 (389)
Q Consensus 248 ~~~~~l~~~-~G~L~~~~~~~~~~l~iW~l~~~~~~~~W~~~ 288 (389)
+..+.+++- +|+|.|+..+....-.+++-.+-| .+|+..
T Consensus 173 C~~psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG--~tWtea 212 (310)
T PF13859_consen 173 CSDPSVVEWEDGKLLMMTACDDGRRRVYESGDMG--TTWTEA 212 (310)
T ss_dssp -EEEEEEEE-TTEEEEEEE-TTS---EEEESSTT--SS-EE-
T ss_pred cceEEEEeccCCeeEEEEecccceEEEEEEcccc--eehhhc
Confidence 346789999 899999998876556777776644 689863
No 181
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.84 E-value=7.7e+02 Score=24.25 Aligned_cols=128 Identities=7% Similarity=-0.053 Sum_probs=62.2
Q ss_pred eeEC-CeEEEEccCCCCCcEEEEEECCCc--eeeeeCCCCccccCCCceEEEEEEeCCeEEEEEecCC-----CeEEEEE
Q 036391 204 VLAG-GALHWVSPKSSTRSVIMAFNLVAK--EFYQLPLPDSVNVSYANVHVDVGSLEGCLCVFCFYNL-----VYVDMWM 275 (389)
Q Consensus 204 v~~~-G~lywl~~~~~~~~~il~fD~~~e--~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-----~~l~iW~ 275 (389)
+..+ |.+|.-.. ...|.++|..+. .|+.-..+.... ........+..+|.+++...... ..-.++.
T Consensus 106 ~~~~~~~V~v~~~----~g~v~AlD~~TG~~~W~~~~~~~~~~--~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~a 179 (488)
T cd00216 106 AYWDPRKVFFGTF----DGRLVALDAETGKQVWKFGNNDQVPP--GYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRA 179 (488)
T ss_pred EEccCCeEEEecC----CCeEEEEECCCCCEeeeecCCCCcCc--ceEecCCCEEECCEEEEeccccccccCCCCcEEEE
Confidence 3445 88887443 368999999754 455432222100 00001122344566554332110 1224666
Q ss_pred EeeCCCCCCeEEEEEEcCCCCCC------------CcceeeeEEEEeCCCEEEEEEcCc------------------EEE
Q 036391 276 MKEHAVKESWTKLISVQEPTPTR------------SFLFLRPLGYSRNGVKLLLEVRRE------------------KLV 325 (389)
Q Consensus 276 l~~~~~~~~W~~~~~i~~~~~~~------------~~~~~~p~~~~~~g~~i~l~~~~~------------------~l~ 325 (389)
++-...+..|.....-......+ ......+..+...++.|++...+. .++
T Consensus 180 lD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~ 259 (488)
T cd00216 180 YDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIV 259 (488)
T ss_pred EECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEE
Confidence 66433356675443211000000 001112334444567888875332 699
Q ss_pred EEeCCCCcEEEE
Q 036391 326 WFDLETNSLRTV 337 (389)
Q Consensus 326 ~yd~~~~~~~~v 337 (389)
.+|.+|++..+-
T Consensus 260 Ald~~tG~~~W~ 271 (488)
T cd00216 260 ALDADTGKVKWF 271 (488)
T ss_pred EEcCCCCCEEEE
Confidence 999999987765
No 182
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=21.52 E-value=1.5e+02 Score=15.92 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=10.8
Q ss_pred eEEEEeCCCEEEEEEcCcEEEEE
Q 036391 305 PLGYSRNGVKLLLEVRREKLVWF 327 (389)
Q Consensus 305 p~~~~~~g~~i~l~~~~~~l~~y 327 (389)
-+++.++|++++......++..|
T Consensus 6 gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEEEE
T ss_pred EEEEeCCCCEEEEECCCCEEEEC
Confidence 35555555444443334455543
No 183
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=20.89 E-value=3.9e+02 Score=20.49 Aligned_cols=93 Identities=14% Similarity=0.010 Sum_probs=52.1
Q ss_pred ceeEEEEEEcCCCcEEEcccCCcccccccccccccccccCceeeECCeEEEEccCCCC---CcEEEEE-ECCCceeeee-
Q 036391 162 VEVEVEVYSLKINSWRRISNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSST---RSVIMAF-NLVAKEFYQL- 236 (389)
Q Consensus 162 ~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~---~~~il~f-D~~~e~~~~i- 236 (389)
....+-.|+.++.+|+.+..+.. .........-+-.+|+|-.+...... ...|-++ |..+++|...
T Consensus 18 ~~~~IvsFDv~~E~f~~i~~P~~---------~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~ 88 (129)
T PF08268_consen 18 DNNVIVSFDVRSEKFRFIKLPED---------PYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKH 88 (129)
T ss_pred CCcEEEEEEcCCceEEEEEeeee---------eccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEE
Confidence 44567789999999998865410 11122333446788988776554222 1344444 6778899873
Q ss_pred -CCCCccccCC--CceEEEEEEeCCeEEEE
Q 036391 237 -PLPDSVNVSY--ANVHVDVGSLEGCLCVF 263 (389)
Q Consensus 237 -~~P~~~~~~~--~~~~~~l~~~~G~L~~~ 263 (389)
.+|....... ..+.+.-+.-+|.+.++
T Consensus 89 ~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 89 IVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred EECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 4665432101 22233333446777666
No 184
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=20.44 E-value=1.6e+02 Score=19.80 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.6
Q ss_pred EEEEEeCCCCcEEEE
Q 036391 323 KLVWFDLETNSLRTV 337 (389)
Q Consensus 323 ~l~~yd~~~~~~~~v 337 (389)
+++.||+++++++-+
T Consensus 42 KIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 42 KIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCeEEEE
Confidence 799999999999876
No 185
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.35 E-value=1.9e+02 Score=16.66 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=17.3
Q ss_pred CCCEEEEEEc-CcEEEEEeCCCCcEE
Q 036391 311 NGVKLLLEVR-REKLVWFDLETNSLR 335 (389)
Q Consensus 311 ~g~~i~l~~~-~~~l~~yd~~~~~~~ 335 (389)
+|+.++.... ++.+..+|+.+++..
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~ 27 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVI 27 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 5667776543 457888999887653
No 186
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.07 E-value=2.5e+02 Score=27.90 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=52.1
Q ss_pred CceEEEEcCCcccccccCCCCCCCCCCCceeEEEEeeecCCCCeeEEEEEEEeCCCCCCceeEEEEEEcCCCcEEEc---
Q 036391 103 VQELALFNPSTRKLKTLPLPPCFVGFPSAFIFYGFGQDKSNDDYKLVRVLHFKGNDGEDVEVEVEVYSLKINSWRRI--- 179 (389)
Q Consensus 103 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~~~ykvv~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~--- 179 (389)
++.+.+|+|..++.. .++.. .+.....-.+-.-+..+..-++..+. ....+..|+.+...|..-
T Consensus 803 D~giHlWDPFigr~L--aq~~d---apk~~a~~~ikcl~nv~~~iliAgcs--------aeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLL--AQMED---APKEGAGGNIKCLENVDRHILIAGCS--------AESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred cCcceeecccccchh--Hhhhc---CcccCCCceeEecccCcchheeeecc--------chhhheeeecccccceeeEEe
Confidence 345689999887643 22221 11111111122233334444554432 445788999998776531
Q ss_pred ccCCcccccccccccccccccCceeeECCeEEEEccCCCCCcEEEEEECCCce
Q 036391 180 SNLPRFLRDFYDYLYHSLFRKGYGVLAGGALHWVSPKSSTRSVIMAFNLVAKE 232 (389)
Q Consensus 180 ~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~il~fD~~~e~ 232 (389)
-..| .+.....++.+..+=.|++.. -....|..+|..+..
T Consensus 870 cna~------------~Pna~~R~iaVa~~GN~lAa~-LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 870 CNAP------------GPNALTRAIAVADKGNKLAAA-LSNGCIAILDARNGK 909 (1034)
T ss_pred ccCC------------CCchheeEEEeccCcchhhHH-hcCCcEEEEecCCCc
Confidence 1112 111122345555555566542 233578888887754
Done!