BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036393
(692 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 386 FVIQGSDSLASWQANLFFEPTEF---EGTDVLVHRGIYEAAKGIYEQFMPEIMDHLNRHG 442
V +GS S+ +W A+L F P + GT VH+G ++ + + + ++D ++
Sbjct: 77 IVFRGSSSIRNWIADLTFVPVSYPPVSGTK--VHKGFLDSYGEVQNELVATVLDQFKQY- 133
Query: 443 ERAKLQFTGH 452
K+ TGH
Sbjct: 134 PSYKVAVTGH 143
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 386 FVIQGSDSLASWQANLFFEPTEF---EGTDVLVHRGIYEAAKGIYEQFMPEIMDHLNRHG 442
V +GS S+ +W A+L F P + GT VH+G ++ + + + ++D ++
Sbjct: 77 IVFRGSSSIRNWIADLTFVPVSYPPVSGTK--VHKGFLDSYGEVQNELVATVLDQFKQY- 133
Query: 443 ERAKLQFTGH 452
K+ TGH
Sbjct: 134 PSYKVAVTGH 143
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 386 FVIQGSDSLASWQANLFFEPTEF---EGTDVLVHRGIYEAAKGIYEQFMPEIMDHLNRHG 442
V +GS S+ +W A+L F P + GT VH+G ++ + + + ++D ++
Sbjct: 77 IVFRGSSSIRNWIADLTFVPVSYPPVSGTK--VHKGFLDSYGEVQNELVATVLDQFKQY- 133
Query: 443 ERAKLQFTGH 452
K+ TGH
Sbjct: 134 PSYKVAVTGH 143
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 386 FVIQGSDSLASWQANLFFEPTEF---EGTDVLVHRGIYEAAKGIYEQFMPEIMDHLNRHG 442
V +GS S+ +W A+L F P + GT VH+G ++ + + + ++D ++
Sbjct: 77 IVFRGSSSIRNWIADLTFVPVSYPPVSGTK--VHKGFLDSYGEVQNELVATVLDQFKQY- 133
Query: 443 ERAKLQFTGH 452
K+ TGH
Sbjct: 134 PSYKVAVTGH 143
>pdb|3EU7|A Chain A, Crystal Structure Of A Palb2 BRCA2 COMPLEX
Length = 356
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 541 SHPCLNKNKLLYSPLGKLFILQPDEKLSPSHPL--LPPGNA 579
SHPC +++ L SP+ +L ++ P LS L LPPG A
Sbjct: 245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA 285
>pdb|2W18|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Human
Palb2
Length = 356
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 541 SHPCLNKNKLLYSPLGKLFILQPDEKLSPSHPL--LPPGNA 579
SHPC +++ L SP+ +L ++ P LS L LPPG A
Sbjct: 245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA 285
>pdb|3NOY|A Chain A, Crystal Structure Of Ispg (Gcpe)
pdb|3NOY|B Chain B, Crystal Structure Of Ispg (Gcpe)
pdb|3NOY|C Chain C, Crystal Structure Of Ispg (Gcpe)
pdb|3NOY|D Chain D, Crystal Structure Of Ispg (Gcpe)
Length = 366
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 388 IQGSDSLASWQANLFFEPTEFEGTDVLVHRGIYEAAKG 425
I+GSD L + +ANL F E TDV +H GI EA G
Sbjct: 184 IKGSDVLQNVRANLIFA----ERTDVPLHIGITEAGMG 217
>pdb|3ML3|A Chain A, Crystal Structure Of The Icsa Autochaperone Region
Length = 189
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 74 GLFPLQCQLSSSIIPNSVRS-FLFDPETSKDMSIVDKKMNVIEDLAESNEEEMKIKKANW 132
GL P +S +++ N++ + FL DP ++K +VI + + SN + ++K NW
Sbjct: 13 GLVPRGSHMSGTVLINNINAPFLPDPVIVTGNMTLEKNGHVILNNSSSNVGQTYVQKGNW 72
>pdb|1G8S|A Chain A, Methanococcus Jannaschii Fibrillarin Pre-Rrna Processing
Protein
Length = 230
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 80 CQLSSSIIPNSVRSFLFDPETSKDMSIVDKKMNVI-EDLAESNEEEMKIKKANW 132
C +IIP L D ++ + + +K++VI ED+A+ N+ E+ IK A W
Sbjct: 118 CAERENIIP-----ILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKW 166
>pdb|1FBN|A Chain A, Crystal Structure Of A Fibrillarin Homologue From
Methanococcus Jannaschii, A Hyperthermophile, At 1.6 A
Length = 230
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 80 CQLSSSIIPNSVRSFLFDPETSKDMSIVDKKMNVI-EDLAESNEEEMKIKKANW 132
C +IIP L D ++ + + +K++VI ED+A+ N+ E+ IK A W
Sbjct: 118 CAERENIIP-----ILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKW 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,644,670
Number of Sequences: 62578
Number of extensions: 701561
Number of successful extensions: 1487
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1486
Number of HSP's gapped (non-prelim): 10
length of query: 692
length of database: 14,973,337
effective HSP length: 106
effective length of query: 586
effective length of database: 8,340,069
effective search space: 4887280434
effective search space used: 4887280434
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)