Query 036394
Match_columns 80
No_of_seqs 61 out of 63
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 12:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06522 B12D: NADH-ubiquinone 99.3 8.8E-13 1.9E-17 83.6 2.2 57 7-72 10-72 (73)
2 PF06679 DUF1180: Protein of u 76.9 1.2 2.7E-05 32.4 1.0 40 2-41 90-135 (163)
3 PF12433 PV_NSP1: Parvovirus n 74.2 2.3 5E-05 28.4 1.7 28 35-65 47-76 (80)
4 PRK13887 conjugal transfer pro 60.9 16 0.00034 27.3 4.0 34 26-60 87-124 (250)
5 PF12286 DUF3622: Protein of u 55.1 9.7 0.00021 24.9 1.8 28 31-59 34-61 (71)
6 PF04971 Lysis_S: Lysis protei 52.3 7.7 0.00017 25.2 1.0 29 8-36 34-65 (68)
7 PRK13865 type IV secretion sys 48.8 39 0.00084 25.4 4.4 35 26-60 72-110 (229)
8 PF03501 S10_plectin: Plectin/ 40.5 20 0.00043 24.4 1.6 21 42-67 68-88 (95)
9 PF05751 FixH: FixH; InterPro 38.8 23 0.00051 23.3 1.7 26 26-51 23-49 (146)
10 PRK13872 conjugal transfer pro 38.4 52 0.0011 24.0 3.6 35 26-60 73-110 (228)
11 PF01485 IBR: IBR domain; Int 37.5 11 0.00024 21.2 0.0 18 45-63 1-18 (64)
12 PF06809 NPDC1: Neural prolife 35.0 44 0.00096 27.4 3.1 23 14-36 209-232 (341)
13 PTZ00034 40S ribosomal protein 28.8 37 0.00079 24.2 1.5 21 42-67 71-91 (124)
14 COG3766 Predicted membrane pro 28.8 23 0.00051 25.6 0.5 33 6-38 78-115 (133)
15 PF01307 Plant_vir_prot: Plant 27.6 58 0.0013 22.0 2.3 18 5-22 11-28 (104)
16 PRK13836 conjugal transfer pro 27.3 1.4E+02 0.0031 21.7 4.4 35 26-60 64-101 (220)
17 PF12273 RCR: Chitin synthesis 24.8 19 0.00041 24.1 -0.5 13 26-38 20-32 (130)
18 cd02680 MIT_calpain7_2 MIT: do 24.8 44 0.00095 21.4 1.2 29 39-67 20-48 (75)
19 KOG2710 Rho GTPase-activating 22.9 69 0.0015 26.6 2.3 65 11-75 95-182 (412)
20 PF04335 VirB8: VirB8 protein; 22.5 50 0.0011 22.7 1.2 34 26-59 52-90 (212)
21 KOG4656 Copper chaperone for s 21.8 31 0.00067 27.2 0.0 12 32-43 214-225 (247)
22 PF09835 DUF2062: Uncharacteri 21.3 48 0.001 22.4 0.9 59 3-61 17-90 (154)
23 PRK14487 cbb3-type cytochrome 20.8 91 0.002 24.0 2.4 34 41-74 108-145 (217)
24 PF13056 DUF3918: Protein of u 20.4 96 0.0021 18.5 2.0 16 7-22 6-21 (43)
25 COG3416 Uncharacterized protei 20.4 73 0.0016 25.0 1.8 18 5-22 142-159 (233)
26 PF07330 DUF1467: Protein of u 20.3 45 0.00098 22.0 0.6 49 10-58 1-56 (85)
No 1
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=99.31 E-value=8.8e-13 Score=83.57 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhh--hee---EEeeccccccccccchhhhhhhhhhHHHHHhhcCCCcccccc-ccCCC
Q 036394 7 QQRICYIIMFCLFSLA--FCL---RRLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVD 72 (80)
Q Consensus 7 ~~A~g~avgiC~fql~--i~~---VRv~K~~RaagvLeN~~EGekY~eH~lRrfvr~r~PeImP~i-~fFs~ 72 (80)
-++||+|+|+|+|+++ ++. |+++|++| .++|++|++|..|||++.+. +|||.+ ++ +|
T Consensus 10 ~~~vg~a~~~a~~~~~r~l~~~PdV~~~k~~~-------~~pw~~~~~~~~~K~~~~~~-~~~~~~~~~-pd 72 (73)
T PF06522_consen 10 FVIVGVAVGGATFYLYRLLLTNPDVRWNKKNR-------PEPWEKYKPHEQRKFYSINQ-DYMPLKNNF-PD 72 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecCC-------cChhhhcCccccEEeecccc-ccccccccC-CC
Confidence 3789999999999999 545 99999998 89999999999999999999 999999 65 65
No 2
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=76.87 E-value=1.2 Score=32.43 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHHHHhhh-hee--EEeeccc---cccccccch
Q 036394 2 DDEIKQQRICYIIMFCLFSLA-FCL--RRLSKEN---RAVGVLENF 41 (80)
Q Consensus 2 ~~~~~~~A~g~avgiC~fql~-i~~--VRv~K~~---RaagvLeN~ 41 (80)
|...-|.++-+++|+++..++ +.+ +|.-|.+ |+=|||.|.
T Consensus 90 d~~~l~R~~~Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~ 135 (163)
T PF06679_consen 90 DSPMLKRALYVLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTR 135 (163)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccceeecccCCC
Confidence 334567888899999998888 444 7777733 566999876
No 3
>PF12433 PV_NSP1: Parvovirus non-structural protein 1 ; InterPro: IPR021076 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents a domain of the parvovirus non-capsid protein 1. It is found immediately N-terminal to the helicase domain and its function is unknown. Parvoviral NS1 regulates host gene expression through histone acetylation [].
Probab=74.20 E-value=2.3 Score=28.42 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=21.8
Q ss_pred cccccc-hhhhhhhhhhHHHHH-hhcCCCcccc
Q 036394 35 VGVLEN-FAEGKEFSEHFLRLY-VHNKTPEIMP 65 (80)
Q Consensus 35 agvLeN-~~EGekY~eH~lRrf-vr~r~PeImP 65 (80)
.|+.+| .+|+|+ |.||+. +..++||||-
T Consensus 47 gG~i~Nfl~~~eR---~~v~kmY~de~~~e~~d 76 (80)
T PF12433_consen 47 GGWIDNFLKEKER---KLVSKMYTDEQSPETVD 76 (80)
T ss_pred CceeechhhhHHH---HHHHHHHHhhcCcchhh
Confidence 378899 699987 888884 5567899874
No 4
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=60.93 E-value=16 Score=27.28 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=21.3
Q ss_pred EEeeccccccccccchhh----hhhhhhhHHHHHhhcCC
Q 036394 26 RRLSKENRAVGVLENFAE----GKEFSEHFLRLYVHNKT 60 (80)
Q Consensus 26 VRv~K~~RaagvLeN~~E----GekY~eH~lRrfvr~r~ 60 (80)
|+|+|.++.. ++.-.++ ++.-.+|.|.+|++++.
T Consensus 87 V~VD~tG~~~-~v~~~~~~~~~~ea~~~~~L~~fV~~re 124 (250)
T PRK13887 87 VQVDKLGQTV-AAGPVDAAGKADPRVIHAAVADFIENAR 124 (250)
T ss_pred EEECCCCceE-EeccccccCCCCHHHHHHHHHHHHHhcE
Confidence 9999865442 2222211 45567789999999753
No 5
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=55.08 E-value=9.7 Score=24.95 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=23.4
Q ss_pred cccccccccchhhhhhhhhhHHHHHhhcC
Q 036394 31 ENRAVGVLENFAEGKEFSEHFLRLYVHNK 59 (80)
Q Consensus 31 ~~RaagvLeN~~EGekY~eH~lRrfvr~r 59 (80)
+.|..| .++.+|+..|.|+-|.-||.++
T Consensus 34 SK~~~G-F~SEaeAq~W~e~eL~~fl~n~ 61 (71)
T PF12286_consen 34 SKRQDG-FASEAEAQAWGEKELKSFLENQ 61 (71)
T ss_pred EecccC-cccHHHHHHHHHHHHHHHHHHH
Confidence 445666 6789999999999999999774
No 6
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=52.27 E-value=7.7 Score=25.15 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhh-hee--EEeeccccccc
Q 036394 8 QRICYIIMFCLFSLA-FCL--RRLSKENRAVG 36 (80)
Q Consensus 8 ~A~g~avgiC~fql~-i~~--VRv~K~~Raag 36 (80)
+|||+..|+..-.++ ++- +++.+++|.+.
T Consensus 34 ~aIGvi~gi~~~~lt~ltN~YFK~k~drr~~a 65 (68)
T PF04971_consen 34 AAIGVIGGIFFGLLTYLTNLYFKIKEDRRKAA 65 (68)
T ss_pred hhHHHHHHHHHHHHHHHhHhhhhhhHhhhHhh
Confidence 688888888766666 443 89988888764
No 7
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=48.83 E-value=39 Score=25.41 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=23.9
Q ss_pred EEeeccccccc--cc--cchhhhhhhhhhHHHHHhhcCC
Q 036394 26 RRLSKENRAVG--VL--ENFAEGKEFSEHFLRLYVHNKT 60 (80)
Q Consensus 26 VRv~K~~Raag--vL--eN~~EGekY~eH~lRrfvr~r~ 60 (80)
+||++.+..-= .+ .+..+.|.-..|.|-+|++.|-
T Consensus 72 i~Vd~TG~~~~v~~v~~~~~t~~Eal~k~~l~~YV~aRE 110 (229)
T PRK13865 72 LWVRPDGTVDSEVSVSRLPATQEQAVVNASLWEYVRLRE 110 (229)
T ss_pred EEEcCCCeEEEEEecccCCCCHHHHHHHHHHHHHhhhhc
Confidence 89976443320 11 2346778889999999999873
No 8
>PF03501 S10_plectin: Plectin/S10 domain; InterPro: IPR005326 This presumed domain is found at the N terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.; PDB: 2XZM_7 2XZN_7 3U5C_K 3U5G_K.
Probab=40.49 E-value=20 Score=24.41 Aligned_cols=21 Identities=48% Similarity=0.827 Sum_probs=14.8
Q ss_pred hhhhhhhhhHHHHHhhcCCCcccccc
Q 036394 42 AEGKEFSEHFLRLYVHNKTPEIMPKI 67 (80)
Q Consensus 42 ~EGekY~eH~lRrfvr~r~PeImP~i 67 (80)
+||..| ||.||+ -++||+|+-
T Consensus 68 ~eGIey----LR~yL~-LP~eivPaT 88 (95)
T PF03501_consen 68 NEGIEY----LREYLH-LPAEIVPAT 88 (95)
T ss_dssp HHHHHH----HHHHC--SSTT--TCC
T ss_pred chhHHH----HHHHhC-CChhhCcHH
Confidence 789887 888885 578999986
No 9
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=38.79 E-value=23 Score=23.28 Aligned_cols=26 Identities=8% Similarity=0.256 Sum_probs=16.3
Q ss_pred EEeeccccccccccc-hhhhhhhhhhH
Q 036394 26 RRLSKENRAVGVLEN-FAEGKEFSEHF 51 (80)
Q Consensus 26 VRv~K~~RaagvLeN-~~EGekY~eH~ 51 (80)
|.+.-.+--.-|-|| +++|..|.+.-
T Consensus 23 v~~A~~~~~~lV~~dYY~~g~~y~~~i 49 (146)
T PF05751_consen 23 VYIAISTPDGLVVDDYYEKGLAYNQDI 49 (146)
T ss_pred EeeeccCCCCceeccHHHhhhhhhhhh
Confidence 444443333346677 79999999653
No 10
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=38.42 E-value=52 Score=24.02 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=23.7
Q ss_pred EEeecccccccc--c-cchhhhhhhhhhHHHHHhhcCC
Q 036394 26 RRLSKENRAVGV--L-ENFAEGKEFSEHFLRLYVHNKT 60 (80)
Q Consensus 26 VRv~K~~Raagv--L-eN~~EGekY~eH~lRrfvr~r~ 60 (80)
|+|+|.++...+ + +.....+.-..|.|.+|++++.
T Consensus 73 v~VD~tG~~~~v~~~~~~~~~~e~~~~~~l~~yV~~re 110 (228)
T PRK13872 73 VEVDRLGQAQAVAPAAADYRPTDPQIAWHLARFIELVR 110 (228)
T ss_pred EEEcCCCceEEeccccccCCCCHHHHHHHHHHHHHHHh
Confidence 999997765322 2 1234455667799999999874
No 11
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=37.50 E-value=11 Score=21.15 Aligned_cols=18 Identities=22% Similarity=0.711 Sum_probs=9.6
Q ss_pred hhhhhhHHHHHhhcCCCcc
Q 036394 45 KEFSEHFLRLYVHNKTPEI 63 (80)
Q Consensus 45 ekY~eH~lRrfvr~r~PeI 63 (80)
|||.+-.+|+|| ...+++
T Consensus 1 eky~~~~~~~~~-~~~~~~ 18 (64)
T PF01485_consen 1 EKYQKFLLKRYL-ESDPNI 18 (64)
T ss_dssp HCHHHCCCHS----S---C
T ss_pred ChHHHHHHHHHH-HCCCCc
Confidence 688888899999 555554
No 12
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=35.01 E-value=44 Score=27.44 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=17.0
Q ss_pred HHHHHHhhh-heeEEeeccccccc
Q 036394 14 IMFCLFSLA-FCLRRLSKENRAVG 36 (80)
Q Consensus 14 vgiC~fql~-i~~VRv~K~~Raag 36 (80)
+|+.++.++ +|.+|.+|+.|.+.
T Consensus 209 aG~aAliva~~cW~Rlqr~~rlaq 232 (341)
T PF06809_consen 209 AGAAALIVAGYCWYRLQREIRLAQ 232 (341)
T ss_pred HHHHHHHHhhheEEEecccccccc
Confidence 455555555 77799999999875
No 13
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=28.81 E-value=37 Score=24.22 Aligned_cols=21 Identities=43% Similarity=0.937 Sum_probs=17.1
Q ss_pred hhhhhhhhhHHHHHhhcCCCcccccc
Q 036394 42 AEGKEFSEHFLRLYVHNKTPEIMPKI 67 (80)
Q Consensus 42 ~EGekY~eH~lRrfvr~r~PeImP~i 67 (80)
+||..| ||.||+ -++||+|+=
T Consensus 71 ~eGiey----LR~yL~-LP~eivP~T 91 (124)
T PTZ00034 71 DEGIEY----LRTYLH-LPPDVFPAT 91 (124)
T ss_pred hHHHHH----HHHHhC-CCcccCchh
Confidence 799887 888885 578999964
No 14
>COG3766 Predicted membrane protein [Function unknown]
Probab=28.75 E-value=23 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhh-hee----EEeeccccccccc
Q 036394 6 KQQRICYIIMFCLFSLA-FCL----RRLSKENRAVGVL 38 (80)
Q Consensus 6 ~~~A~g~avgiC~fql~-i~~----VRv~K~~RaagvL 38 (80)
--.++|+++=+.+|..+ +.+ .||+-.|+++|.+
T Consensus 78 ~Wg~~~~vvqLl~f~i~~~l~p~l~~~I~ngn~AaG~~ 115 (133)
T COG3766 78 AWGAIALVVQLLVFFIVRLLMPDLDEKIENGNVAAGFI 115 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHHhcCcchHHHH
Confidence 34678888888888888 444 8999999999865
No 15
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=27.63 E-value=58 Score=21.99 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 036394 5 IKQQRICYIIMFCLFSLA 22 (80)
Q Consensus 5 ~~~~A~g~avgiC~fql~ 22 (80)
+..+|+|++++++.|.+.
T Consensus 11 ~l~~aiG~~lal~i~~lt 28 (104)
T PF01307_consen 11 YLAAAIGVSLALIIFTLT 28 (104)
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 567888888888888876
No 16
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=27.34 E-value=1.4e+02 Score=21.66 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=22.3
Q ss_pred EEeeccccccccc--cch-hhhhhhhhhHHHHHhhcCC
Q 036394 26 RRLSKENRAVGVL--ENF-AEGKEFSEHFLRLYVHNKT 60 (80)
Q Consensus 26 VRv~K~~RaagvL--eN~-~EGekY~eH~lRrfvr~r~ 60 (80)
|+|+|.....++. +-. .-++.=..+.|.+|++++.
T Consensus 64 V~VD~~g~~v~~~~~~~~~~~~~~~~~~~la~fI~~~r 101 (220)
T PRK13836 64 VEVDKLGTAVNAGFPQQIEYADPRVVRATLGSFVTNFR 101 (220)
T ss_pred EEEcCCCCEEEeccccccCCCCHHHHHHHHHHHHHhhe
Confidence 9999985443332 111 3345666788899988864
No 17
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.79 E-value=19 Score=24.13 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=8.1
Q ss_pred EEeeccccccccc
Q 036394 26 RRLSKENRAVGVL 38 (80)
Q Consensus 26 VRv~K~~RaagvL 38 (80)
.+++|..|..|+.
T Consensus 20 ~~~~rRR~r~G~~ 32 (130)
T PF12273_consen 20 YCHNRRRRRRGLQ 32 (130)
T ss_pred HHHHHHHhhcCCC
Confidence 5566666666754
No 18
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=24.75 E-value=44 Score=21.42 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=23.9
Q ss_pred cchhhhhhhhhhHHHHHhhcCCCcccccc
Q 036394 39 ENFAEGKEFSEHFLRLYVHNKTPEIMPKI 67 (80)
Q Consensus 39 eN~~EGekY~eH~lRrfvr~r~PeImP~i 67 (80)
.|++|+..+=.|+|..|++.++|.+=+.|
T Consensus 20 gny~eA~~lY~~ale~~~~ekn~~~k~~i 48 (75)
T cd02680 20 GNAEEAIELYTEAVELCINTSNETMDQAL 48 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHhcChhhHHHH
Confidence 38999999999999999997766655444
No 19
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=22.94 E-value=69 Score=26.65 Aligned_cols=65 Identities=20% Similarity=0.344 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhh---hee---EEeeccccccccc-cchhhh----------hhhhhhH----HHHHhhcCCCcccccc--
Q 036394 11 CYIIMFCLFSLA---FCL---RRLSKENRAVGVL-ENFAEG----------KEFSEHF----LRLYVHNKTPEIMPKI-- 67 (80)
Q Consensus 11 g~avgiC~fql~---i~~---VRv~K~~RaagvL-eN~~EG----------ekY~eH~----lRrfvr~r~PeImP~i-- 67 (80)
=.+|.-|+.+|. +.+ +||+=..+.---| ++++-| +.|+-|. ||||+|+.+-.+.|.=
T Consensus 95 P~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY 174 (412)
T KOG2710|consen 95 PRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVNDWEDFNVHDVAALLKEFLRDLPDPLLPLELY 174 (412)
T ss_pred cHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHHhCCcccCCHHHH
Confidence 357888999998 333 8998776654333 446666 4566664 7999999998998863
Q ss_pred ccCCCCCC
Q 036394 68 CFFVDPNY 75 (80)
Q Consensus 68 ~fFs~p~~ 75 (80)
.-|..|-+
T Consensus 175 ~~f~~p~k 182 (412)
T KOG2710|consen 175 ESFINPAK 182 (412)
T ss_pred HHHhhhhc
Confidence 55555433
No 20
>PF04335 VirB8: VirB8 protein; InterPro: IPR007430 VirB8 is a bacterial virulence protein with cytoplasmic, transmembrane, and periplasmic regions. It is thought that it is a primary constituent of a DNA transporter. The periplasmic region interacts with VirB9, VirB10, and itself []. This family also includes the conjugal transfer protein family TrbF, a family of proteins known to be involved in conjugal transfer. The TrbF protein is thought to compose part of the pilus required for transfer []. ; GO: 0016020 membrane; PDB: 2CC3_B 2BHM_C.
Probab=22.51 E-value=50 Score=22.66 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=13.3
Q ss_pred EEeecc-cccccc--cc--chhhhhhhhhhHHHHHhhcC
Q 036394 26 RRLSKE-NRAVGV--LE--NFAEGKEFSEHFLRLYVHNK 59 (80)
Q Consensus 26 VRv~K~-~Raagv--Le--N~~EGekY~eH~lRrfvr~r 59 (80)
|+|++. ++..-+ +. +....+.=.++.+++|++.+
T Consensus 52 v~vd~~tG~~~~v~~~~~~~~~~~~~~~~~~l~~yv~~r 90 (212)
T PF04335_consen 52 VEVDKNTGEVTVVGPATAQNYTPDEAVIRYFLARYVRAR 90 (212)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcEEEEeecccccCCchHHHHHHHHHHHHheE
Confidence 889998 543322 21 34446666788999999854
No 21
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=21.84 E-value=31 Score=27.19 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=9.8
Q ss_pred ccccccccchhh
Q 036394 32 NRAVGVLENFAE 43 (80)
Q Consensus 32 ~RaagvLeN~~E 43 (80)
.|+|||+||++.
T Consensus 214 ARSAGv~eN~Kq 225 (247)
T KOG4656|consen 214 ARSAGVWENNKQ 225 (247)
T ss_pred eeccccccCcce
Confidence 489999999763
No 22
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=21.31 E-value=48 Score=22.36 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHH-------HHhhhhee--EEeeccccccccccchh-----h-hhhhhhhHHHHHhhcCCC
Q 036394 3 DEIKQQRICYIIMFC-------LFSLAFCL--RRLSKENRAVGVLENFA-----E-GKEFSEHFLRLYVHNKTP 61 (80)
Q Consensus 3 ~~~~~~A~g~avgiC-------~fql~i~~--VRv~K~~RaagvLeN~~-----E-GekY~eH~lRrfvr~r~P 61 (80)
+.-++.|.|+|+|+. ++|++++. ..+.|-|..++++-|.= = --=|..+.+=+++.+.++
T Consensus 17 ~~p~~iA~g~AiG~fig~~P~~g~~~~l~~~la~~~r~N~~aa~~~~~i~nPlt~~~i~~~~y~vG~~ll~~~~ 90 (154)
T PF09835_consen 17 GSPHSIALGFAIGVFIGFLPIFGLQTVLAIALALLFRLNKPAAILGTWISNPLTIPPIYPLSYRVGSFLLGGPP 90 (154)
T ss_pred CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCh
Confidence 344667777777764 35555222 33333455555554421 1 112344555555555555
No 23
>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional
Probab=20.83 E-value=91 Score=24.01 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=25.7
Q ss_pred hhhhhhhhhhHHHHHhhcC----CCccccccccCCCCC
Q 036394 41 FAEGKEFSEHFLRLYVHNK----TPEIMPKICFFVDPN 74 (80)
Q Consensus 41 ~~EGekY~eH~lRrfvr~r----~PeImP~i~fFs~p~ 74 (80)
.-.|.||+..-++..+.+- +--|||+..|+++.+
T Consensus 108 t~vG~R~s~~w~~~hl~nP~~v~PgS~MPay~~L~~~~ 145 (217)
T PRK14487 108 ARVGGRYSDEWHRNHLINPRSVVPESNMPAYPWLAEND 145 (217)
T ss_pred hhhhccCCHHHHHHHHhCcccCCCCCCCCCCccccccc
Confidence 3568899999999999884 347999995555443
No 24
>PF13056 DUF3918: Protein of unknown function (DUF3918)
Probab=20.42 E-value=96 Score=18.47 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhh
Q 036394 7 QQRICYIIMFCLFSLA 22 (80)
Q Consensus 7 ~~A~g~avgiC~fql~ 22 (80)
-.++++.+|+.++|++
T Consensus 6 tSlla~GaG~aAy~~A 21 (43)
T PF13056_consen 6 TSLLAFGAGAAAYQMA 21 (43)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 4678899999999987
No 25
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.41 E-value=73 Score=24.97 Aligned_cols=18 Identities=11% Similarity=-0.300 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 036394 5 IKQQRICYIIMFCLFSLA 22 (80)
Q Consensus 5 ~~~~A~g~avgiC~fql~ 22 (80)
+-|.|.|||.||.+|++.
T Consensus 142 AlqTAAGVAGGMlL~n~L 159 (233)
T COG3416 142 ALQTAAGVAGGMLLANGL 159 (233)
T ss_pred HHHHHhhhhhhHHHHHHH
Confidence 568899999999999988
No 26
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=20.30 E-value=45 Score=21.95 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhh--hee-----EEeeccccccccccchhhhhhhhhhHHHHHhhc
Q 036394 10 ICYIIMFCLFSLA--FCL-----RRLSKENRAVGVLENFAEGKEFSEHFLRLYVHN 58 (80)
Q Consensus 10 ~g~avgiC~fql~--i~~-----VRv~K~~RaagvLeN~~EGekY~eH~lRrfvr~ 58 (80)
||...++..|.++ ++. +++.-++-.-.+.+--++|--=+-|..||++.+
T Consensus 1 M~~~s~~aiy~viWw~~lF~vLP~gvrtq~E~g~vv~Gt~~sAP~~~~l~rk~~~T 56 (85)
T PF07330_consen 1 MGITSALAIYFVIWWIVLFAVLPFGVRTQDEAGEVVPGTDPSAPANPRLKRKALIT 56 (85)
T ss_pred CcchhhhHHHHHHHHHHHHHHccCCccccCcCCCcCCCCCCCCCCCchHHHHHHHH
Confidence 4556677777777 222 666444444556667777877788888888875
Done!