Query 036394
Match_columns 80
No_of_seqs 61 out of 63
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 21:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v8i_A Pectate lyase; periplas 56.6 6.3 0.00021 32.8 2.6 38 42-80 219-256 (543)
2 3u5c_K 40S ribosomal protein S 33.9 20 0.00068 23.9 1.8 21 42-67 70-90 (105)
3 3pcv_A Leukotriene C4 synthase 24.1 18 0.0006 24.6 0.2 36 1-38 1-36 (156)
4 2klu_A T-cell surface glycopro 23.6 40 0.0014 21.2 1.7 42 8-60 12-55 (70)
5 3mk7_B Cytochrome C oxidase, C 21.7 26 0.00089 25.5 0.7 28 43-70 112-143 (203)
6 1c2n_A Cytochrome C2; electron 21.1 33 0.0011 21.7 1.0 17 42-58 83-99 (137)
7 3ne8_A N-acetylmuramoyl-L-alan 14.9 81 0.0028 22.3 1.9 31 35-65 191-233 (234)
8 2c1d_B SOXX; sulfur oxidation, 13.2 75 0.0026 19.5 1.2 26 42-67 65-94 (137)
9 1cxc_A Cytochrome C2; electron 12.2 87 0.003 19.5 1.3 23 43-66 67-89 (124)
10 2bhm_A Type IV secretion syste 11.5 78 0.0027 20.5 1.0 34 26-59 1-39 (164)
No 1
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=56.64 E-value=6.3 Score=32.80 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=31.1
Q ss_pred hhhhhhhhhHHHHHhhcCCCccccccccCCCCCCCCCCC
Q 036394 42 AEGKEFSEHFLRLYVHNKTPEIMPKICFFVDPNYDCPEP 80 (80)
Q Consensus 42 ~EGekY~eH~lRrfvr~r~PeImP~i~fFs~p~~~~~~~ 80 (80)
++...|+.|..|+||..|.||.==+.==||.|.+.|| |
T Consensus 219 ~~a~~W~k~L~~QYVlaR~p~TGl~vYQFssp~kr~~-P 256 (543)
T 2v8i_A 219 QGALTWAKRLADQYVLPRDAKTGLGVYQFTQALKREE-P 256 (543)
T ss_dssp HHHHHHHHHHHHHTTTTSCTTTCCCCSCSEEECCCSC-C
T ss_pred hHHHHHHHHHHHHHhhccCCCCCCceeeecCccccCC-C
Confidence 6778899999999999999987444445788888888 5
No 2
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=33.88 E-value=20 Score=23.88 Aligned_cols=21 Identities=38% Similarity=0.687 Sum_probs=17.4
Q ss_pred hhhhhhhhhHHHHHhhcCCCcccccc
Q 036394 42 AEGKEFSEHFLRLYVHNKTPEIMPKI 67 (80)
Q Consensus 42 ~EGekY~eH~lRrfvr~r~PeImP~i 67 (80)
+||..| ||.||+ -++||+|+-
T Consensus 70 nEGiey----LR~yLh-LP~eivPaT 90 (105)
T 3u5c_K 70 EEGVEY----LREYLN-LPEHIVPGT 90 (105)
T ss_dssp HHHHHH----HHHHTC-CCSSCCSSC
T ss_pred hhhHHH----HHHHhC-CCchhcCcc
Confidence 788887 888875 578999987
No 3
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=24.09 E-value=18 Score=24.63 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhheeEEeeccccccccc
Q 036394 1 MDDEIKQQRICYIIMFCLFSLAFCLRRLSKENRAVGVL 38 (80)
Q Consensus 1 ~~~~~~~~A~g~avgiC~fql~i~~VRv~K~~RaagvL 38 (80)
|.+|+- .++.++.+++++....+++|.|+.++.+|-
T Consensus 1 M~~el~--lla~v~vl~~l~~~~~s~~V~~~R~k~~V~ 36 (156)
T 3pcv_A 1 MKDEVA--LLAAVTLLGVLLQAYFSLQVISARRAFRVS 36 (156)
T ss_dssp CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 556654 444555555566665557888887777764
No 4
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=23.60 E-value=40 Score=21.17 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhh-he-eEEeeccccccccccchhhhhhhhhhHHHHHhhcCC
Q 036394 8 QRICYIIMFCLFSLA-FC-LRRLSKENRAVGVLENFAEGKEFSEHFLRLYVHNKT 60 (80)
Q Consensus 8 ~A~g~avgiC~fql~-i~-~VRv~K~~RaagvLeN~~EGekY~eH~lRrfvr~r~ 60 (80)
..+|+++|+.+|... |+ .||-+...|.|. ++.-.+|++..++
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrqAe-----------RMSQikrlLsEKK 55 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAE-----------RMSQIKRLLSEKK 55 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCT-----------TSSHHHHHHHSSS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHhccc
Confidence 467888888777766 33 488887777765 2334566665543
No 5
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=21.72 E-value=26 Score=25.54 Aligned_cols=28 Identities=21% Similarity=0.365 Sum_probs=22.1
Q ss_pred hhhhhhhhHHHHHhhc----CCCccccccccC
Q 036394 43 EGKEFSEHFLRLYVHN----KTPEIMPKICFF 70 (80)
Q Consensus 43 EGekY~eH~lRrfvr~----r~PeImP~i~fF 70 (80)
-|.+|+...+++++++ ++-.+||+..|.
T Consensus 112 vG~R~s~~wl~~~I~dPq~v~PGS~MPay~~L 143 (203)
T 3mk7_B 112 VGGRYSDDWHRAHLYNPRNVVPESKMPSYPWL 143 (203)
T ss_dssp CTTTSCHHHHHHHHHCHHHHSTTCCCCCCTHH
T ss_pred hhccCCHHHHHHHHhCccccCCCCCCCCCccc
Confidence 3678999999999987 445899999433
No 6
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=21.12 E-value=33 Score=21.66 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.0
Q ss_pred hhhhhhhhhHHHHHhhc
Q 036394 42 AEGKEFSEHFLRLYVHN 58 (80)
Q Consensus 42 ~EGekY~eH~lRrfvr~ 58 (80)
+.|..|.+.-|++|+++
T Consensus 83 ~~g~~w~~~~l~~~i~~ 99 (137)
T 1c2n_A 83 ASGFAWTEEDIATYVKD 99 (137)
T ss_dssp HTTCCCCHHHHHHHTTS
T ss_pred hcCccCCHHHHHHHHhC
Confidence 45667889999999987
No 7
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=14.88 E-value=81 Score=22.27 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=22.5
Q ss_pred cccccchhhhhhhhhh------------HHHHHhhcCCCcccc
Q 036394 35 VGVLENFAEGKEFSEH------------FLRLYVHNKTPEIMP 65 (80)
Q Consensus 35 agvLeN~~EGekY~eH------------~lRrfvr~r~PeImP 65 (80)
.|.|.|.+|.++..+- ++.+|+..+.|+|=|
T Consensus 191 ~GFisN~~d~~~L~~~~~q~kiA~aIa~GI~~Yf~~~~~~~~~ 233 (234)
T 3ne8_A 191 IGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAEYRQKIMQP 233 (234)
T ss_dssp SCCTTSHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred eccCCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 3667888888877654 566788877777755
No 8
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=13.19 E-value=75 Score=19.47 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=19.3
Q ss_pred hhhhhhhhhHHHHHhhcCC---C-cccccc
Q 036394 42 AEGKEFSEHFLRLYVHNKT---P-EIMPKI 67 (80)
Q Consensus 42 ~EGekY~eH~lRrfvr~r~---P-eImP~i 67 (80)
.-+.+|....|++++++-. | .+||.+
T Consensus 65 ~~~~~~~~~~l~~~i~~p~~~~~~~~Mp~~ 94 (137)
T 2c1d_B 65 GAGDRWTEAQLRGIVANAKMTFEGTFMPAF 94 (137)
T ss_dssp THHHHSCHHHHHHHHHHGGGTSTTCSSCCS
T ss_pred HhhhccCHHHHHHHHcCccccCCCcccCcc
Confidence 3466899999999987632 2 588887
No 9
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*
Probab=12.21 E-value=87 Score=19.51 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=16.6
Q ss_pred hhhhhhhhHHHHHhhcCCCccccc
Q 036394 43 EGKEFSEHFLRLYVHNKTPEIMPK 66 (80)
Q Consensus 43 EGekY~eH~lRrfvr~r~PeImP~ 66 (80)
.|..|.+.-|++|+.+ +..++|+
T Consensus 67 ~g~~w~~~~l~~~l~~-P~~~~pg 89 (124)
T 1cxc_A 67 KGLAWDEEHFVQYVQD-PTKFLKE 89 (124)
T ss_dssp TTCBCCHHHHHHHHHC-HHHHHHH
T ss_pred cCccCCHHHHHHHHhC-hHhhCCC
Confidence 4668999999999986 2245554
No 10
>2bhm_A Type IV secretion system protein VIRB8; bacterial protein, bacterial type IV secretion; 2.4A {Brucella melitensis biovar suis} SCOP: d.17.4.26
Probab=11.52 E-value=78 Score=20.50 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=14.3
Q ss_pred EEeecc-cccc--ccccc--hhhhhhhhhhHHHHHhhcC
Q 036394 26 RRLSKE-NRAV--GVLEN--FAEGKEFSEHFLRLYVHNK 59 (80)
Q Consensus 26 VRv~K~-~Raa--gvLeN--~~EGekY~eH~lRrfvr~r 59 (80)
|||.|. +++. +-++. ....+.-..|.|-+|++.+
T Consensus 1 v~VD~~tG~~~~v~~~~~~~~~~~ea~~~~~la~yV~~r 39 (164)
T 2bhm_A 1 ARVNAQTGAPDILTSLDEKSVSYDTVMDKYWLSQYVIAR 39 (164)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHH
T ss_pred CEEeCCCCEEEEEEcccCCCCCHHHHHHHHHHHHHHHHc
Confidence 455665 4433 33433 5566677888999998876
Done!