Query 036394
Match_columns 80
No_of_seqs 61 out of 63
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 21:07:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036394.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036394hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 26.2 30 0.0022 19.2 2.9 20 3-22 21-40 (56)
2 d2ooxe1 d.37.1.1 (E:3-181) Unc 24.9 13 0.00092 22.1 1.2 27 40-66 1-28 (179)
3 d1m3ga_ c.45.1.1 (A:) Mapk pho 20.7 23 0.0017 20.9 1.8 19 53-71 115-133 (145)
4 d2dyja1 d.52.7.1 (A:4-94) Ribo 19.7 39 0.0028 19.1 2.6 51 23-73 30-88 (91)
5 d1dj8a_ a.57.1.1 (A:) Protein 19.1 29 0.0021 20.7 1.9 16 1-16 16-31 (79)
6 d1fx0a1 a.69.1.1 (A:373-501) F 18.6 16 0.0012 22.3 0.7 32 35-67 71-104 (129)
7 d1beda_ c.47.1.13 (A:) Disulfi 18.3 7.2 0.00053 22.7 -1.0 28 41-78 3-31 (181)
8 d1fvka_ c.47.1.13 (A:) Disulfi 14.4 10 0.00076 22.3 -1.0 28 41-78 3-31 (188)
9 d1un2a_ c.47.1.13 (A:) Disulfi 13.1 12 0.00087 23.9 -1.1 29 40-78 97-126 (195)
10 d2e7ga1 d.52.7.1 (A:86-201) Ri 12.8 1.3E+02 0.0093 17.3 3.9 52 23-74 39-101 (116)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=26.22 E-value=30 Score=19.24 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 036394 3 DEIKQQRICYIIMFCLFSLA 22 (80)
Q Consensus 3 ~~~~~~A~g~avgiC~fql~ 22 (80)
+|-++.|+..++|++.+-..
T Consensus 21 ~Ef~~ia~v~~iG~~i~G~I 40 (56)
T d1rh5b_ 21 DEYLAVAKVTALGISLLGII 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68899999999888877655
No 2
>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=24.85 E-value=13 Score=22.08 Aligned_cols=27 Identities=11% Similarity=0.394 Sum_probs=23.5
Q ss_pred chhhhhhhhhhHHHHHhhcCCC-ccccc
Q 036394 40 NFAEGKEFSEHFLRLYVHNKTP-EIMPK 66 (80)
Q Consensus 40 N~~EGekY~eH~lRrfvr~r~P-eImP~ 66 (80)
|.+|.++.+.-.++.|+++++. ++||.
T Consensus 1 ~~~~~~~~~~~~i~~fl~~~~~~dvm~~ 28 (179)
T d2ooxe1 1 DVQETQKGALKEIQAFIRSRTSYDVLPT 28 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHSBHHHHSCS
T ss_pred CcCHHHHHHHHHHHHHHcCCEeeeeCCC
Confidence 4678899999999999999986 99983
No 3
>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}
Probab=20.69 E-value=23 Score=20.85 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=15.2
Q ss_pred HHHhhcCCCccccccccCC
Q 036394 53 RLYVHNKTPEIMPKICFFV 71 (80)
Q Consensus 53 Rrfvr~r~PeImP~i~fFs 71 (80)
=+||+.++|.|.|...|+.
T Consensus 115 ~~~v~~~Rp~v~pn~~f~~ 133 (145)
T d1m3ga_ 115 FDFVKQRRGVISPNFSFMG 133 (145)
T ss_dssp HHHHSCSCCCCSSCSSCCC
T ss_pred HHHHHHHCCCCCCCHHHHH
Confidence 3589999999999777654
No 4
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]}
Probab=19.67 E-value=39 Score=19.15 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=31.1
Q ss_pred heeEEeecccccccc----ccchhhhhhh---hhhHHHHHhhcCCC-ccccccccCCCC
Q 036394 23 FCLRRLSKENRAVGV----LENFAEGKEF---SEHFLRLYVHNKTP-EIMPKICFFVDP 73 (80)
Q Consensus 23 i~~VRv~K~~Raagv----LeN~~EGekY---~eH~lRrfvr~r~P-eImP~i~fFs~p 73 (80)
|+-|+++++.+.|-| +.+.++..+. +-+.+|+++..+-. --.|.|.|+-|.
T Consensus 30 It~V~~S~Dl~~akVyvs~~~~~~~~~~~L~~~~~~ir~~l~~~l~~r~~P~L~F~~D~ 88 (91)
T d2dyja1 30 VEAVRLSKDGSVLSVYVEAFREEEGALRALSRAERRLVAALARRVRMRRLPRLEFLPWR 88 (91)
T ss_dssp EEEEEECTTSSEEEEEEECSSCHHHHHHHHHHTHHHHHHHHHTTSCCSSCCEEEEEEGG
T ss_pred EEEEEECCCcccEEEEEEeccchHHHHHHHHHHHHHHHHHHHhhCCCccCCEEEEEeCC
Confidence 344999999998854 4444443332 33457777766532 346777776554
No 5
>d1dj8a_ a.57.1.1 (A:) Protein HNS-dependent expression A; HdeA {Escherichia coli [TaxId: 562]}
Probab=19.08 E-value=29 Score=20.66 Aligned_cols=16 Identities=6% Similarity=0.312 Sum_probs=14.1
Q ss_pred CcHHHHHHHHHHHHHH
Q 036394 1 MDDEIKQQRICYIIMF 16 (80)
Q Consensus 1 ~~~~~~~~A~g~avgi 16 (80)
+||..|-.|+|+|.|+
T Consensus 16 lddtfkP~av~~Aeg~ 31 (79)
T d1dj8a_ 16 VDESFQPTAVGFAEAL 31 (79)
T ss_dssp SCGGGHHHHHHHHHHH
T ss_pred cccccCcceehHHHHh
Confidence 5888999999999986
No 6
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=18.58 E-value=16 Score=22.31 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=25.7
Q ss_pred cccccch--hhhhhhhhhHHHHHhhcCCCcccccc
Q 036394 35 VGVLENF--AEGKEFSEHFLRLYVHNKTPEIMPKI 67 (80)
Q Consensus 35 agvLeN~--~EGekY~eH~lRrfvr~r~PeImP~i 67 (80)
.|.||+. +.=.+| +..|+.|+++..|+|+-.|
T Consensus 71 ~G~LD~ipv~~I~~f-e~~ll~~l~~~~~~il~~I 104 (129)
T d1fx0a1 71 NGYLDSLELDQVRKY-LVELRTYVKTNKPEFQEII 104 (129)
T ss_dssp TTSSSSSCHHHHHHH-HHHHHHHHHHTCHHHHHHH
T ss_pred cCccccCCHHHHHHH-HHHHHHHHHHhhHHHHHHH
Confidence 6888884 444444 7889999999999999888
No 7
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}
Probab=18.29 E-value=7.2 Score=22.72 Aligned_cols=28 Identities=32% Similarity=0.783 Sum_probs=16.4
Q ss_pred hhhhhhhhhhHHHHHhhcCCCcccccc-ccCCCCCCCCC
Q 036394 41 FAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVDPNYDCP 78 (80)
Q Consensus 41 ~~EGekY~eH~lRrfvr~r~PeImP~i-~fFs~p~~~~~ 78 (80)
|+||..|. +-+.+..--|.| .|| +..||
T Consensus 3 ~~~G~~y~-------~~~~p~~~~~~Ivef~---d~~Cp 31 (181)
T d1beda_ 3 FKEGEHYQ-------VLKTPASSSPVVSEFF---SFYCP 31 (181)
T ss_dssp SCBTTTEE-------ECSSCCCSSCEEEEEE---CTTCH
T ss_pred ccCCCCCE-------ECCCCCCCCCEEEEEE---CCCCc
Confidence 57788775 222222456788 876 35665
No 8
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}
Probab=14.44 E-value=10 Score=22.35 Aligned_cols=28 Identities=29% Similarity=0.750 Sum_probs=17.4
Q ss_pred hhhhhhhhhhHHHHHhhcCCCcccccc-ccCCCCCCCCC
Q 036394 41 FAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVDPNYDCP 78 (80)
Q Consensus 41 ~~EGekY~eH~lRrfvr~r~PeImP~i-~fFs~p~~~~~ 78 (80)
|+||+-|.. -..+-.=-|.| .||+ ..||
T Consensus 3 ~~eG~~y~~-------~~~p~~~~~~VvEffd---y~Cp 31 (188)
T d1fvka_ 3 YEDGKQYTT-------LEKPVAGAPQVLEFFS---FFCP 31 (188)
T ss_dssp SCBTTTEEE-------CSSCCTTCCSEEEEEC---TTCH
T ss_pred CCCCCCcEE-------CCCCCCCCCEEEEEEC---CCCh
Confidence 678888842 22332335678 9884 7787
No 9
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}
Probab=13.10 E-value=12 Score=23.90 Aligned_cols=29 Identities=28% Similarity=0.732 Sum_probs=17.7
Q ss_pred chhhhhhhhhhHHHHHhhcCCCcccccc-ccCCCCCCCCC
Q 036394 40 NFAEGKEFSEHFLRLYVHNKTPEIMPKI-CFFVDPNYDCP 78 (80)
Q Consensus 40 N~~EGekY~eH~lRrfvr~r~PeImP~i-~fFs~p~~~~~ 78 (80)
.++||+.|.. -..+..--|.+ +||+ ..||
T Consensus 97 ~~~eG~~Y~~-------l~~p~~~~~~VvEffs---y~Cp 126 (195)
T d1un2a_ 97 QYEDGKQYTT-------LEKPVAGAPQVLEFFS---FFCP 126 (195)
T ss_dssp -CCBTTTEEE-------CSSCCTTCCSEEEEEC---TTCH
T ss_pred CCCCCCcceE-------CCCCCCCCceEEEEEe---cCCc
Confidence 3677777653 22232346788 9995 7887
No 10
>d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.82 E-value=1.3e+02 Score=17.34 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=33.0
Q ss_pred heeEEeecccccccc----ccc---hhhh---hhhhhhHHHHHhhcCCC-ccccccccCCCCC
Q 036394 23 FCLRRLSKENRAVGV----LEN---FAEG---KEFSEHFLRLYVHNKTP-EIMPKICFFVDPN 74 (80)
Q Consensus 23 i~~VRv~K~~Raagv----LeN---~~EG---ekY~eH~lRrfvr~r~P-eImP~i~fFs~p~ 74 (80)
|+-|+++.+-+.|-| +.+ .++. -+=+-..+|+++..+-. --.|.|.|+-|..
T Consensus 39 It~V~vS~Dl~~AkVy~s~~~~~~~~~~~~~~L~~~~~~ir~~l~~~l~lr~~P~L~F~~D~s 101 (116)
T d2e7ga1 39 LSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIVFVQDKG 101 (116)
T ss_dssp EEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHHHTHHHHHHHHHTCTTCSCCCCEEEEETTC
T ss_pred EEEEEEcCCCcEEEEEEEeCCchhhHHHHHHHHHHHHHHHHHHHHHHhCccccceEEEEeCCC
Confidence 555999999998865 222 2222 23344567888876642 4678888877654
Done!