BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036398
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 276 bits (705), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 163/453 (35%), Positives = 240/453 (52%), Gaps = 41/453 (9%)
Query: 43 HNYVAALKIAMQFFDIQKSGKLVNNQ-IKWRGDSGLKDGKEVDLDLSKGMYDAGDAVKFG 101
++Y L+ ++ F++ Q+SG+L +Q + WR DS L D + DL+ G +DAGD VKFG
Sbjct: 3 YDYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKFG 62
Query: 102 FPLAFTATMLSWTILERGQRMGMEGVDQLQKAKDSVKWITDYLVNAHPKDNVLYVQVGDA 161
FP+A+TAT+L+W +++ G L + +VKW TDY + AH N Y QVG
Sbjct: 63 FPMAYTATVLAWGLIDF--EAGYSSAGALDDGRKAVKWATDYFIKAHTSQNEFYGQVGQG 120
Query: 162 EKDHKCWQRPESITDNKPLFQINTTAPGSDVXXXXXXXXXXXXXVFKKSDPPYSAKLLEH 221
+ DH W RPE +T +P ++I+T+ PGSD+ VF+ D YS LL H
Sbjct: 121 DADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTH 180
Query: 222 AKKLFIFADKYREYYSVSLPQVKKYYNSTGYGDELLWAASWLYHATQENIYKDYVVGSEA 281
A++LF FA+ YR YS S+ + +Y S Y DEL+WAA+WLY AT +N Y + S
Sbjct: 181 ARQLFDFANNYRGKYSDSITDARNFYASADYRDELVWAAAWLYRATNDNTYLN-TAESLY 239
Query: 282 EEFA--DWGKPSWFSWDNKLAGVQVLLSRVYFFHGKDNTKLAKYQKSAQALMCTLLPESP 339
+EF +WG +WD+K++GVQVLL+++ T Y+ + Q+ + L+
Sbjct: 240 DEFGLQNWGGG--LNWDSKVSGVQVLLAKL--------TNKQAYKDTVQSYVNYLINN-- 287
Query: 340 SATSDRTNGGLIWIAEWNALQHPVAVAFLASLYGDYMEKSDNENLECDEKTFKSEDLREF 399
+T GL++I W L+H AF+ LE E + R+F
Sbjct: 288 ---QQKTPKGLLYIDMWGTLRHAANAAFIM--------------LEAAELGLSASSYRQF 330
Query: 400 AKKQADYVLGDNPNSMSYLVGYSKKFPKFVHHRGASIPADATTGCKDGYQWLESTKPNPN 459
A+ Q DY LGD S++ G+ P HHR +S P T C + S PN +
Sbjct: 331 AQTQIDYALGD--GGRSFVCGFGSNPPTRPHHRSSSCPPAPAT-CD--WNTFNSPDPNYH 385
Query: 460 EATGALVGGPFMNETYIDSRNNSMQGE-PTTYN 491
+GALVGGP N+ Y+D R++ + E T YN
Sbjct: 386 VLSGALVGGPDQNDNYVDDRSDYVHNEVATDYN 418
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 172/462 (37%), Positives = 239/462 (51%), Gaps = 50/462 (10%)
Query: 44 NYVAALKIAMQFFDIQKSGKLV-NNQIKWRGDSGLKDGKEVDLDLSKGMYDAGDAVKFGF 102
NY AL+ +M F++ Q+SGKL NN++ WRGDSGL DG +V LDL+ G YDAGD VKFGF
Sbjct: 5 NYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGF 64
Query: 103 PLAFTATMLSWTILERGQRMGMEGVDQLQKAKDSVKWITDYLVNAHPKDNVLYVQVGDAE 162
P+AFTATML+W +E + G Q+ KD+++W+ DY + AHP NVLYVQVGD +
Sbjct: 65 PMAFTATMLAWGAIESPEGYIRSG--QMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGDGD 122
Query: 163 KDHKCWQRPESITDNKPLFQINTTAPGSDVXXXXXXXXXXXXXVFKKSDPPYSAKLLEHA 222
DHK W E + +P F+++ + PGSDV VF DP Y+A L++HA
Sbjct: 123 ADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHA 182
Query: 223 KKLFIFADKYREYYSVSLPQVKKYYNSTGYGDELLWAASWLYHATQENIY-------KDY 275
K+L+ FAD YR YS +P Y + +GY DEL+W A WLY AT ++ Y D+
Sbjct: 183 KQLYTFADTYRGVYSDCVPAGAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEYDF 242
Query: 276 VVGSEAEEFADWGKPSW-FSWDNKLAGVQVLLSRVYFFHGKDNTKLAKYQKSAQALMCTL 334
+ E+ D W +WD+K G VLL++ T KY A +
Sbjct: 243 L---STEQQTDLRSYRWTIAWDDKSYGTYVLLAK--------ETGKQKYIDDANRWLDYW 291
Query: 335 LPESPSATSDRTNGGLIWIAEWNALQHPVAVAFLASLYGDYMEKSDNENLECDEKTFKSE 394
+ GG+ + W AL++ AF+A +Y ++ + +
Sbjct: 292 TVGVNGQRVPYSPGGMAVLDTWGALRYAANTAFVALVYAKVIDDP-----------VRKQ 340
Query: 395 DLREFAKKQADYVLGDNPNSMSYLVGYSKKFPKFVHHRGASIPADATTGCKDGYQWLES- 453
+FA +Q +Y LGDNP + SY+VG+ P+ HHR A W +S
Sbjct: 341 RYHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHG------------SWTDSI 388
Query: 454 TKPNPNEAT--GALVGGPFM-NETYIDSRNNSMQGE-PTTYN 491
P N GALVGGP N+ Y D R + + E T YN
Sbjct: 389 ASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYN 430
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 234 bits (598), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 158/462 (34%), Positives = 230/462 (49%), Gaps = 56/462 (12%)
Query: 36 EPSESHKHNYVAALKIAMQFFDIQKSGKLVNNQIK--WRGDSGLKDGKEVDLDLSKGMYD 93
+P + NY AL+ A+ F++ Q+SGKL ++ ++ WRGDSGL DGK+ +DL+ G YD
Sbjct: 17 QPPATGAFNYGEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAGIDLTGGWYD 76
Query: 94 AGDAVKFGFPLAFTATMLSWTILERGQRMGMEGVDQLQKAKDSVKWITDYLVNAHPKDNV 153
AGD VKF P++++A ML W + E G Q +++KW DY + HP+ +V
Sbjct: 77 AGDHVKFNLPMSYSAAMLGWAVYEYEDAFKQSG--QYNHILNNIKWACDYFIKCHPEKDV 134
Query: 154 LYVQVGDAEKDHKCWQRPESITDNKPLFQINTTAPGSDVXXXXXXXXXXXXXVFKKSDPP 213
Y QVGD DH W E + +P ++++ ++PGS V +FKK D
Sbjct: 135 YYYQVGDGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGE 194
Query: 214 YSAKLLEHAKKLFIFADKYREYYSVSLPQVKKYYNS-TGYGDELLWAASWLYHATQENIY 272
YS + L+HAK+LF FAD + +YNS +G+ DEL WAA WLY AT ++ Y
Sbjct: 195 YSKECLKHAKELFEFADTTKS--DDGYTAANGFYNSWSGFYDELSWAAVWLYLATNDSSY 252
Query: 273 KDYVVGSEAEEFAD-WG--------KPSWFS-WDNKLAGVQVLLSRVYFFHGKDNTKLAK 322
D +AE ++D WG K W WD+ G +LL+R+ DN K
Sbjct: 253 LD-----KAESYSDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLARI----KNDN---GK 300
Query: 323 YQKSAQALMCTLLPESPSATSDRTNGGLIWIAEWNALQHPVAVAFLASLYGDYMEKSDNE 382
Y+++ + + T GL W+ +W +L++ AFLA +Y D+ E D E
Sbjct: 301 YKEAIERHLDWWTTGYNGERITYTPKGLAWLDQWGSLRYATTTAFLACVYSDW-ENGDKE 359
Query: 383 NLECDEKTFKSEDLREFAKKQADYVLGDNPNSMSYLVGYSKKFPKFVHHRGASIPADATT 442
K++ EFA+ QADY LG S++VG+ + PK HHR A
Sbjct: 360 ---------KAKTYLEFARSQADYALGS--TGRSFVVGFGENPPKRPHHRTAHG------ 402
Query: 443 GCKDGYQWLESTKPNPNEAT---GALVGGPFMNETYIDSRNN 481
W +S P GALVGGP + Y D +N
Sbjct: 403 ------SWADSQMEPPEHRHVLYGALVGGPDSTDNYTDDISN 438
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 221 bits (563), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 233/475 (49%), Gaps = 66/475 (13%)
Query: 34 GVEPSESH----KHNYVAALKIAMQFFDIQKSGKLVN-NQIKWRGDSGLKDGKEVDLDLS 88
G+ P SH NY AL+ A+ F++ Q SGKL N + WRGDS LKDG++ LDL+
Sbjct: 13 GLVPRGSHMASGSFNYGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLT 72
Query: 89 KGMYDAGDAVKFGFPLAFTATMLSWTILERGQRMGMEGVDQLQKAKDSVKWITDYLVNAH 148
G +DAGD VKF P+++T TMLSW + E G QL+ + ++W+ DY V H
Sbjct: 73 GGWFDAGDHVKFNLPMSYTGTMLSWAVYEYKDAFVKSG--QLEHILNQIEWVNDYFVKCH 130
Query: 149 PKDNVLYVQVGDAEKDHKCWQRPESITDNKPLFQINTTAPGSDVXXXXXXXXXXXXXVFK 208
P V Y QVGD KDH W E + +P F++ ++PGS V V K
Sbjct: 131 PSKYVYYYQVGDGSKDHAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLK 190
Query: 209 KSDPPYSAKLLEHAKKLFIFADKYREYYSVSLPQVKKYYNS-TGYGDELLWAASWLYHAT 267
+P +A L+HAK+L+ FA+ + YYNS +G+ DEL WAA WLY AT
Sbjct: 191 DRNPTKAATYLQHAKELYEFAEVTKS--DAGYTAANGYYNSWSGFYDELSWAAVWLYLAT 248
Query: 268 QENIYKDYVVGSEAEEFA-DWGKPS--------W-FSWDNKLAGVQVLLSRVYFFHGKDN 317
++ Y ++AE + +W K S W WD+ G +LL+++ GKD
Sbjct: 249 NDSTYL-----TKAESYVQNWPKISGSNTIDYKWAHCWDDVHNGAALLLAKI---TGKDI 300
Query: 318 TKLAKYQKSAQALMCTLLPESPSATSDR---TNGGLIWIAEWNALQHPVAVAFLASLYGD 374
K Q + L + +R T GL W+ +W +L++ AFLA +Y D
Sbjct: 301 YK--------QIIESHLDYWTTGYNGERIKYTPKGLAWLDQWGSLRYATTTAFLAFVYSD 352
Query: 375 YMEKSDNENLECDEKTFKSEDLREFAKKQADYVLGDNPNSMSYLVGYSKKFPKFVHHRGA 434
+ + C + K E R+F + Q DY LG S++VG+ PK HHR A
Sbjct: 353 W--------VGC--PSTKKEIYRKFGESQIDYALGS--AGRSFVVGFGTNPPKRPHHRTA 400
Query: 435 SIPADATTGCKDGYQWLES-TKPNPNEAT--GALVGGPFMNETYIDSRNNSMQGE 486
W +S + P+ + T GALVGGP +++Y D +N + E
Sbjct: 401 HS------------SWADSQSIPSYHRHTLYGALVGGPGSDDSYTDDISNYVNNE 443
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 150/456 (32%), Positives = 218/456 (47%), Gaps = 51/456 (11%)
Query: 43 HNYVAALKIAMQFFDIQKSGKL-VNNQIKWRGDSGLKDGKEVDLDLSKGMYDAGDAVKFG 101
+NY AL+ ++ F++ Q+SG L + + WR DSG+KDG +V +DL+ G YDAGD VKF
Sbjct: 4 YNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFN 63
Query: 102 FPLAFTATMLSWTILERGQRMGMEGVDQLQKAKDSVKWITDYLVNAHPKDNVLYVQVGDA 161
P+++T+ ML+W++ E G Q + D +KW DY + +P V Y QVGD
Sbjct: 64 LPMSYTSAMLAWSLYEDKDAYDKSG--QTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDG 121
Query: 162 EKDHKCWQRPESITDNKPLFQINTTAPGSDVXXXXXXXXXXXXXVFKKSDPPYSAKLLEH 221
KDH W E + +P F+++ + PGS V VFK SDP Y+ K + H
Sbjct: 122 GKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISH 181
Query: 222 AKKLFIFADKYREYYSVSLPQVKKYYNSTGYGDELLWAASWLYHATQENIYKD----YVV 277
AK LF ADK + YY+S+ + D+L WAA WLY AT ++ Y D YV
Sbjct: 182 AKNLFDMADKAKS--DAGYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVP 239
Query: 278 GSEAEEFAD-----WGKPSWFSWDNKLAGVQVLLSRVYFFHGKDNTKLAKYQKSAQALMC 332
E+ D WG+ WD+ G ++LL+++ T Y+ S + +
Sbjct: 240 NWGKEQQTDIIAYKWGQ----XWDDVHYGAELLLAKL--------TNKQLYKDSIEMNLD 287
Query: 333 TLLPESPSATSDRTNGGLIWIAEWNALQHPVAVAFLASLYGDYMEKSDNENLECDEKTFK 392
T GL W+ +W +L+H AFLA +Y ++ + + K
Sbjct: 288 FWTTGVNGTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPS----------K 337
Query: 393 SEDLREFAKKQADYVLGDNPNSMSYLVGYSKKFPKFVHHRGASIPADATTGCKDGYQWLE 452
++F K Q DY LG S++VGY P+ HHR A G +
Sbjct: 338 VSVYKDFLKSQIDYALGS--TGRSFVVGYGVNPPQHPHHRTAH-----------GSWTDQ 384
Query: 453 STKPNPNEAT--GALVGGPFMNETYIDSRNNSMQGE 486
T P + T GALVGGP + Y D NN + E
Sbjct: 385 MTSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNE 420
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 211 bits (538), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 150/456 (32%), Positives = 218/456 (47%), Gaps = 51/456 (11%)
Query: 43 HNYVAALKIAMQFFDIQKSGKL-VNNQIKWRGDSGLKDGKEVDLDLSKGMYDAGDAVKFG 101
+NY AL+ ++ F++ Q+SG L + + WR DSG+KDG +V +DL+ G YDAGD VKF
Sbjct: 4 YNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFN 63
Query: 102 FPLAFTATMLSWTILERGQRMGMEGVDQLQKAKDSVKWITDYLVNAHPKDNVLYVQVGDA 161
P+++T+ ML+W++ E G Q + D +KW DY + +P V Y QVGD
Sbjct: 64 LPMSYTSAMLAWSLYEDKDAYDKSG--QTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDG 121
Query: 162 EKDHKCWQRPESITDNKPLFQINTTAPGSDVXXXXXXXXXXXXXVFKKSDPPYSAKLLEH 221
KDH W E + +P F+++ + PGS V VFK SDP Y+ K + H
Sbjct: 122 GKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISH 181
Query: 222 AKKLFIFADKYREYYSVSLPQVKKYYNSTGYGDELLWAASWLYHATQENIYKD----YVV 277
AK LF ADK + YY+S+ + D+L WAA WLY AT ++ Y D YV
Sbjct: 182 AKNLFDMADKAKS--DAGYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVP 239
Query: 278 GSEAEEFAD-----WGKPSWFSWDNKLAGVQVLLSRVYFFHGKDNTKLAKYQKSAQALMC 332
E+ D WG+ WD+ G ++LL+++ T Y+ S + +
Sbjct: 240 NWGKEQQTDIIAYKWGQ----CWDDVHYGAELLLAKL--------TNKQLYKDSIEMNLD 287
Query: 333 TLLPESPSATSDRTNGGLIWIAEWNALQHPVAVAFLASLYGDYMEKSDNENLECDEKTFK 392
T GL W+ +W +L+H AFLA +Y ++ + + K
Sbjct: 288 FWTTGVNGTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWEGCTPS----------K 337
Query: 393 SEDLREFAKKQADYVLGDNPNSMSYLVGYSKKFPKFVHHRGASIPADATTGCKDGYQWLE 452
++F K Q DY LG S++VGY P+ HHR A G +
Sbjct: 338 VSVYKDFLKSQIDYALGS--TGRSFVVGYGVNPPQHPHHRTAH-----------GSWTDQ 384
Query: 453 STKPNPNEAT--GALVGGPFMNETYIDSRNNSMQGE 486
T P + T GALVGGP + Y D NN + E
Sbjct: 385 MTSPTYHRHTIYGALVGGPDNADGYTDEINNYVNNE 420
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 213/453 (47%), Gaps = 67/453 (14%)
Query: 43 HNYVAALKIAMQFFDIQKSGKLV--NNQIKWRGDSGLKDGKEVDLDLSKGMYDAGDAVKF 100
H+Y ALK ++ FFD K G NN WRG DG +V +DL+ G +DAGD VKF
Sbjct: 4 HDYSTALKDSIIFFDANKCGPQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDHVKF 63
Query: 101 GFPLAFTATMLSWTILERGQRMGMEGVDQLQKAKDSVKWITDYLVNAHPKDNVLYVQVGD 160
G P ++A +L W++ E + G K +K+ TDY + +HP Y QVG+
Sbjct: 64 GLPQGYSAAILGWSLYEFKESFDATG--NTTKMLQQLKYFTDYFLKSHPNSTTFYYQVGE 121
Query: 161 AEKDHKCWQRPESITDNKP-LFQINTTAPGSDVXXXXXXXXXXXXXVFKKSDPPYSAKLL 219
DH W PE T +P L++ + ++P SD+ +K D Y+ K L
Sbjct: 122 GNADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCL 181
Query: 220 EHAKKLFIFADKYREYYSVSLPQVKKYYNSTGYGDELLWAASWLYHATQENIYKDYVVGS 279
AK+L+ + + + +Y +T +GD+L WAA+WLY AT ++ Y +
Sbjct: 182 NAAKELYAMGKANQ-----GVGNGQSFYQATSFGDDLAWAATWLYTATNDSTYI-----T 231
Query: 280 EAEEFADWG--------KPSW-FSWDNKLAGVQVLLSRVYFFHGKDNTKLA-KYQKSAQA 329
+AE+F G + W WD+ + L+++ GK K A ++ +
Sbjct: 232 DAEQFITLGNTMNENKMQDKWTMCWDDMYVPAALRLAQI---TGKQIYKDAIEFNFNYWK 288
Query: 330 LMCTLLPESPSATSDRTNGGLIWIAEWNALQHPVAVAFLASLYGDYMEKSDNENLECDEK 389
T P GGL W++ W L++ A + + +Y C +
Sbjct: 289 TQVTTTP-----------GGLKWLSNWGVLRYAAAESMVMLVY-------------CKQN 324
Query: 390 TFKSEDLREFAKKQADYVLGDNPNSMSYLVGYSKKFPKFVHHRGASIPADATTGCKDGYQ 449
+S L + AKKQ DY+LGDNP +MSY++GY + HHR A +GY
Sbjct: 325 PDQS--LLDLAKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAA-----------NGYT 371
Query: 450 WL--ESTKPNPNEATGALVGGPFMNETYIDSRN 480
+ ++ KP + TGALVGGP N+ ++D N
Sbjct: 372 YANGDNAKPAKHLLTGALVGGPDQNDKFLDDAN 404
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 141/498 (28%), Positives = 225/498 (45%), Gaps = 77/498 (15%)
Query: 35 VEPSESHKHNYVAALKIAMQFFDIQKSGKLV--NNQIKWRGDSGLKDGK----------- 81
V S + ++NY AL+ +M F+D G V N+ + WRGD + D +
Sbjct: 30 VSTSAAGEYNYAKALQYSMFFYDANMCGTGVDENSLLSWRGDCHVYDARLPLDSQNTNMS 89
Query: 82 ---------------EVDLDLSKGMYDAGDAVKFGFPLAFTATMLSWTILERGQRMGMEG 126
+ +D+S G +DAGD VKFG P A+ A+ + W E + G
Sbjct: 90 DGFISSNRSVLDPDGDGKVDVSGGFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFRATG 149
Query: 127 VDQLQKAKDSVKWITDYLVNAHPKD---NVLYV--QVGDAEKDHKCWQRPESITDNKPLF 181
Q A+ +++ DY + +D NV+ QVGD + DH W PE+ T + +
Sbjct: 150 --QAVHAEVILRYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGW 207
Query: 182 QINTTAPGSDVXXXXXXXXXXXXXVFKKSDPPYSAKLLEHAKKLFIFADKYREYYSVSLP 241
I PG+D+ FK +DP Y+AK L++AK LF FA+K +
Sbjct: 208 FITKEKPGTDIISATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGVVQGED 267
Query: 242 QVKKYYNSTGYGDELLWAASWLYHATQENIYKDYVVGSEAEEFAD-WGKPSWF-SWDNKL 299
K YY S+ + D+ WAA+WLY ATQ Y D EA ++ D + P W W++
Sbjct: 268 GPKGYYGSSKWQDDYCWAAAWLYLATQNEHYLD-----EAFKYYDYYAPPGWIHCWNDVW 322
Query: 300 AGVQVLLSRVYFFHGKDNTKLA-KYQKSAQ----------ALMCTLLPESPSATSDRTNG 348
+G +L+ + + KD+ +Y++++ + LL + T G
Sbjct: 323 SGTACILAEINDLYDKDSQNFEDRYKRASNKNQWEQIDFWKPIQDLLDKWSGGGITVTPG 382
Query: 349 GLIWIAEWNALQHPVAVAFLASLYGDYMEKSDNENLECDEKTFKSEDLREFAKKQADYVL 408
G +++ +W + ++ A +A +Y D + + K +A+ Q DY+L
Sbjct: 383 GYVFLNQWGSARYNTAAQLIALVY-------DKHHGDTPSK------YANWARSQMDYLL 429
Query: 409 GDNPNSMSYLVGYSKKFPKFVHHRGASIPADATTGCKDGYQWLESTKPNPNEATGALVGG 468
G NP + Y+VGYS K+ HHR AS G KD + P+ GALVGG
Sbjct: 430 GKNPLNRCYVVGYSSNSVKYPHHRAAS-------GLKDA----NDSSPHKYVLYGALVGG 478
Query: 469 PFMNETYIDSRNNSMQGE 486
P ++ ++D N+ + E
Sbjct: 479 PDASDQHVDRTNDYIYNE 496
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 206 VFKKSDPPYSAKLLEHAKKLFIFA----DKYREYYSVSLPQVKKYYNSTGYGDELLWAAS 261
++K DP ++A LE A+ + A D Y EY S YN GDE WAA
Sbjct: 303 LWKDYDPTFAADCLEKAEIAWQAALKHPDIYAEYTPGSGGPGGGPYNDDYVGDEFYWAAC 362
Query: 262 WLYHATQENIYKDYVVGS 279
LY T ++ YK+Y++ S
Sbjct: 363 ELYVTTGKDEYKNYLMNS 380
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 206 VFKKSDPPYSAKLLEHAKKLFIFA----DKYREYYSVSLPQVKKYYNSTGYGDELLWAAS 261
++K DP ++A LE A+ + A D Y EY S YN GDE WAA
Sbjct: 303 LWKDYDPTFAADCLEKAEIAWQAALKHPDIYAEYTPGSGGPGGGPYNDDYVGDEFYWAAC 362
Query: 262 WLYHATQENIYKDYVVGS 279
LY T ++ YK+Y++ S
Sbjct: 363 ELYVTTGKDEYKNYLMNS 380
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 103/481 (21%), Positives = 163/481 (33%), Gaps = 76/481 (15%)
Query: 41 HKHNYVAALKIAMQFFDIQKSGKLV--NNQIKW-RGDSGLKD----GKEVDLDLSKGMYD 93
H+ Y L+ ++FFD Q G ++ + W G D G E L G +D
Sbjct: 84 HRRAYRDVLEAMLRFFDYQLCGVVLPEDEAGPWAHGACHTSDAKVFGTERALACPGGWHD 143
Query: 94 AGDAVKFGFPLA-----------FTATMLSWTILERGQRMGMEGVDQLQKAKDSVKWITD 142
AGD K+ P A + L+ R L+ A++ + W+
Sbjct: 144 AGDYGKYTVPAAKAVADLLLAHEYFPAALAHVRPMRSVHRAPHLPPALEVAREEIAWL-- 201
Query: 143 YLVNAHPKDNVLYVQVGDAEKDHKCWQRPESITDNKPLFQINTTAPGSDVXXXXXXXXXX 202
L P +Y +V RPE D+ PL + +
Sbjct: 202 -LTMQDPATGGVYHKVTTPSFP-PLDTRPED--DDAPLVLSPISYAAT---ATFCAAMAH 254
Query: 203 XXXVFKKSDPPYSAKLLEHAKKLFIFADKYREYYSVSLPQVKKYYNSTG-----YGD--- 254
V++ DP S+ + A+ R Y + +++ ++N G YGD
Sbjct: 255 AALVYRPFDPALSSCCADAAR---------RAYAWLGAHEMQPFHNPDGILTGEYGDAEL 305
Query: 255 --ELLWAASWLYHATQENIYKDYVVGSEAEEFADWGKPSWFSW-DNKLAGVQVLL--SRV 309
ELLWA+ L T ++ + E D P W D L GV L R
Sbjct: 306 RDELLWASCALLRMTGDSAW-----ARVCEPLLDLDLPWELGWADVALYGVMDYLRTPRA 360
Query: 310 YFFHGKDNTKLAKYQKSAQALMCTLLPESPSATSDRTNGGLIWIAEWNALQHPVAVAFLA 369
N ++ + AL + ES + IW + L A+AFL
Sbjct: 361 AVSDDVRNKVKSRLLRELDALAA--MAESHPFGIPMRDDDFIWGSNMVLLNR--AMAFLL 416
Query: 370 SLYGDYMEKSDNENLECDEKTFKSEDLREFAKKQADYVLGDNPNSMSYLVGYSKKFPKFV 429
+ + + + A++ ADY+ G NP Y+ G+ ++ +
Sbjct: 417 AEGVGVLHPAAHT----------------VAQRAADYLFGANPLGQCYVTGFGQRPVRHP 460
Query: 430 HHRGASIPADATTGCKDGYQWLESTKPNPNEATGALVGGPFMNETYIDSRNNSMQGEPTT 489
HHR S+ D + A L G P M E YID +++ E
Sbjct: 461 HHR-PSVADDVDHPVPGMVVGGPNRHLQDEIARAQLAGRPAM-EAYIDHQDSYSTNEVAV 518
Query: 490 Y 490
Y
Sbjct: 519 Y 519
>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
Length = 256
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 329 ALMCTLLPESPSATSDRTNGGLIWIAEWN-ALQHP----VAVAFLASLYGDYMEKSDNEN 383
AL C +L S +A T+ + + W +++ P V +A SL GDY+ D
Sbjct: 111 ALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALR 170
Query: 384 LECDEKTFKSEDLREFAKKQADYVLGDNPNSMSYLVGYSKKFPKFVHHRGASIPADATTG 443
+ +DL A++ A ++G+N ++ L+ + G ++ A+A
Sbjct: 171 AGLVTEVVAHDDLLTAARRVAASIVGNNQKAVRALLDSYHRIDAL--QTGGALWAEA--- 225
Query: 444 CKDGYQWLESTKPNPNEATGALV 466
+ QW+ ST + A+ A V
Sbjct: 226 -EAARQWMRSTSGDDIAASRASV 247
>pdb|2XMI|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Complexed With Citrate
pdb|2Y1P|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Complexed With Citrate
pdb|2Y3X|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide 3'-
Phosphodiesterase, Complexed With Sulfate
pdb|2Y3X|B Chain B, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide 3'-
Phosphodiesterase, Complexed With Sulfate
pdb|2Y3X|E Chain E, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide 3'-
Phosphodiesterase, Complexed With Sulfate
pdb|2YDB|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Soaked With 2',3'-Cyclic Nadp
pdb|2YDD|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Soaked With 2',3'-Cyclic Amp
pdb|2YDC|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Soaked With Gtp
Length = 221
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 367 FLASLYGDYMEKSDNENLECDEKTFKSE--DLREFAKKQADYVLGDNPNSMSYLVGYSKK 424
FL +G ++ K +E L + F E + + F K+ ++ GD P LV Y K
Sbjct: 7 FLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGK 66
Query: 425 FPKFVHH 431
P V H
Sbjct: 67 RPPGVLH 73
>pdb|2ILX|A Chain A, Solution Structure Of Catalytic Domain Of Rat
2',3'-Cyclic- Nucleotide 3'-Phosphodiesterase (Cnp)
Protein
Length = 219
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 367 FLASLYGDYMEKSDNENLECDEKTFKSE--DLREFAKKQADYVLGDNPNSMSYLVGYSKK 424
FL +G ++ K +E L + F E + + F K+ ++ GD P LV Y K
Sbjct: 5 FLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLDLVSYFGK 64
Query: 425 FPKFVHH 431
P V H
Sbjct: 65 RPPGVLH 71
>pdb|3W39|A Chain A, Crystal Structure Of Hla-b*5201 In Complexed With Hiv
Immunodominant Epitope (taftipsi)
pdb|3W39|D Chain D, Crystal Structure Of Hla-b*5201 In Complexed With Hiv
Immunodominant Epitope (taftipsi)
Length = 277
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 38 SESHKHNYVAALKIAMQFFDIQKSGKLVNNQIKWRGDSGLKDGKEVDLDLSKG----MYD 93
S+++ Y L+IA+++++ ++G W+ G G D L +G YD
Sbjct: 68 SKTNTQTYRENLRIALRYYNQSEAGSHT-----WQTMYGCDVGP--DGRLLRGHNQYAYD 120
Query: 94 AGDAVKFGFPLA-FTATMLSWTILERGQRMGMEGVDQLQKAKDS--VKWITDYLVNAH-- 148
D + L+ +TA + I +R E +QL+ + V+W+ +L N
Sbjct: 121 GKDYIALNEDLSSWTAADTAAQITQRKWEAARE-AEQLRAYLEGLCVEWLRRHLENGKET 179
Query: 149 ------PKDNVLYVQVGDAEKDHKCW 168
PK +V + V D E +CW
Sbjct: 180 LQRADPPKTHVTHHPVSDHEATLRCW 205
>pdb|3VRI|A Chain A, Hla-B57:01-Rvaqlenvyi In Complex With Abacavir
pdb|3VRJ|A Chain A, Hla-B57:01-Lttkltntni In Complex With Abacavir
Length = 276
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 43 HNYVAALKIAMQFFDIQKSGKLVNNQIKWRGDSGLKDGKEVDLDLSKGMYDAGDAVKFGF 102
Y L+IA+++++ ++G + Q+ + D G DG+ + + YD D +
Sbjct: 72 QTYRENLRIALRYYNQSEAGSHII-QVMYGCDVG-PDGRLL-RGHDQSAYDGKDYI---- 124
Query: 103 PLAFTATMLSWTILERGQRMGMEGVDQLQKAKD--------SVKWITDYLVNAH------ 148
A + SWT + ++ + + A+ V+W+ YL N
Sbjct: 125 --ALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGLCVEWLRRYLENGKETLQRA 182
Query: 149 --PKDNVLYVQVGDAEKDHKCW 168
PK +V + + D E +CW
Sbjct: 183 DPPKTHVTHHPISDHEATLRCW 204
>pdb|1QQD|A Chain A, Crystal Structure Of Hla-Cw4, A Ligand For The Kir2d
Natural Killer Cell Inhibitory Receptor
Length = 273
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 104 LAFTATMLSWTILERGQRMGMEGVDQLQKAKDS--------VKWITDYLVNA-------- 147
+A + SWT + ++ + ++A+ V+W+ YL N
Sbjct: 123 IALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAE 182
Query: 148 HPKDNVLYVQVGDAEKDHKCW 168
HPK +V + V D E +CW
Sbjct: 183 HPKTHVTHHPVSDHEATLRCW 203
>pdb|1EFX|A Chain A, Structure Of A Complex Between The Human Natural Killer
Cell Receptor Kir2dl2 And A Class I Mhc Ligand Hla-Cw3
Length = 278
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 104 LAFTATMLSWTILERGQRMGMEGVDQLQKAKD--------SVKWITDYLVNA-------- 147
+A + SWT + ++ + ++A+ V+W+ YL N
Sbjct: 124 IALNEDLRSWTAADTAAQITQRKWEAAREAEQLRAYLEGLCVEWLRRYLKNGKETLQRAE 183
Query: 148 HPKDNVLYVQVGDAEKDHKCW 168
HPK +V + V D E +CW
Sbjct: 184 HPKTHVTHHPVSDHEATLRCW 204
>pdb|3UPR|A Chain A, Hla-B57:01 Complexed To Pep-V And Abacavir
pdb|3UPR|C Chain C, Hla-B57:01 Complexed To Pep-V And Abacavir
Length = 277
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 43 HNYVAALKIAMQFFDIQKSGKLVNNQIKWRGDSGLKDGKEVDLDLSKGMYDAGDAVKFGF 102
Y L+IA+++++ ++G + Q+ + D G DG+ + + YD D +
Sbjct: 73 QTYRENLRIALRYYNQSEAGSHII-QVMYGCDVG-PDGRLL-RGHDQSAYDGKDYI---- 125
Query: 103 PLAFTATMLSWTILERGQRMGMEGVDQLQKAKD--------SVKWITDYLVNAH------ 148
A + SWT + ++ + + A+ V+W+ YL N
Sbjct: 126 --ALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGLCVEWLRRYLENGKETLQRA 183
Query: 149 --PKDNVLYVQVGDAEKDHKCW 168
PK +V + + D E +CW
Sbjct: 184 DPPKTHVTHHPISDHEATLRCW 205
>pdb|1IM9|A Chain A, Crystal Structure Of The Human Natural Killer Cell
Inhibitory Receptor Kir2dl1 Bound To Its Mhc Ligand
Hla-Cw4
pdb|1IM9|E Chain E, Crystal Structure Of The Human Natural Killer Cell
Inhibitory Receptor Kir2dl1 Bound To Its Mhc Ligand
Hla-Cw4
Length = 276
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 104 LAFTATMLSWTILERGQRMGMEGVDQLQKAKDS--------VKWITDYLVNA-------- 147
+A + SWT + ++ + ++A+ V+W+ YL N
Sbjct: 125 IALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAE 184
Query: 148 HPKDNVLYVQVGDAEKDHKCW 168
HPK +V + V D E +CW
Sbjct: 185 HPKTHVTHHPVSDHEATLRCW 205
>pdb|2RFX|A Chain A, Crystal Structure Of Hla-B5701, Presenting The Self
Peptide, Lsspvtksf
pdb|3VH8|A Chain A, Kir3dl1 In Complex With Hla-B5701
pdb|3VH8|D Chain D, Kir3dl1 In Complex With Hla-B5701
Length = 275
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 43 HNYVAALKIAMQFFDIQKSGKLVNNQIKWRGDSGLKDGKEVDLDLSKGMYDAGDAVKFGF 102
Y L+IA+++++ ++G + Q+ + D G DG+ + + YD D +
Sbjct: 72 QTYRENLRIALRYYNQSEAGSHII-QVMYGCDVG-PDGRLL-RGHDQSAYDGKDYI---- 124
Query: 103 PLAFTATMLSWTILERGQRMGMEGVDQLQKAKD--------SVKWITDYLVNAH------ 148
A + SWT + ++ + + A+ V+W+ YL N
Sbjct: 125 --ALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGLCVEWLRRYLENGKETLQRA 182
Query: 149 --PKDNVLYVQVGDAEKDHKCW 168
PK +V + + D E +CW
Sbjct: 183 DPPKTHVTHHPISDHEATLRCW 204
>pdb|2YPK|A Chain A, Structural Features Underlying T-cell Receptor Sensitivity
To Concealed Mhc Class I Micropolymorphisms
Length = 274
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 43 HNYVAALKIAMQFFDIQKSGKLVNNQIKWRGDSGLKDGKEVDLDLSKGMYDAGDAVKFGF 102
Y L+IA+++++ ++G + Q+ + D G DG+ + + YD D +
Sbjct: 72 QTYRENLRIALRYYNQSEAGSHII-QVMYGCDVG-PDGRLL-RGHDQSAYDGKDYI---- 124
Query: 103 PLAFTATMLSWTILERGQRMGMEGVDQLQKAKD--------SVKWITDYLVNAH------ 148
A + SWT + ++ + + A+ V+W+ YL N
Sbjct: 125 --ALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGLCVEWLRRYLENGKETLQRA 182
Query: 149 --PKDNVLYVQVGDAEKDHKCW 168
PK +V + + D E +CW
Sbjct: 183 DPPKTHVTHHPISDHEATLRCW 204
>pdb|3ESW|A Chain A, Complex Of Yeast Pngase With Glcnac2-Iac
Length = 355
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 265 HATQENIYKDYVVGSEAEEFADWGKPSWFSWDNK 298
HA ENIY DY+V +E + K +F W NK
Sbjct: 111 HAEGENIYTDYLV----KELLRYFKQDFFKWCNK 140
>pdb|1X3Z|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex
Length = 335
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 265 HATQENIYKDYVVGSEAEEFADWGKPSWFSWDNK 298
HA ENIY DY+V +E + K +F W NK
Sbjct: 90 HAEGENIYTDYLV----KELLRYFKQDFFKWCNK 119
>pdb|1X3W|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex
Length = 335
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 265 HATQENIYKDYVVGSEAEEFADWGKPSWFSWDNK 298
HA ENIY DY+V +E + K +F W NK
Sbjct: 90 HAEGENIYTDYLV----KELLRYFKQDFFKWCNK 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,923,360
Number of Sequences: 62578
Number of extensions: 699008
Number of successful extensions: 1767
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1697
Number of HSP's gapped (non-prelim): 40
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)