BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036400
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 58 FGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNV 117
F L +G V + GDA H TPD+GQGGC A+EDAVVL G + +T+ ++
Sbjct: 295 FSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVL----GAVFRQTR---------DI 341
Query: 118 AQAIDGYVKERKWRVTGLVIGSYLSGWVQDGG----SNWWMRFLRDVIFYRFLVG 168
A A+ Y +R RV LV+ + + G + W + LR+ R + G
Sbjct: 342 AAALREYEAQRCDRVRDLVLKARKRCDITHGKDMQLTEAWYQELREETGERIING 396
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 58 FGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNV 117
F L +G V + GDA H TPD+GQGGC A EDAVVL G + +T+ ++
Sbjct: 295 FSRLVRGRVALLGDAGHSTTPDIGQGGCAAXEDAVVL----GAVFRQTR---------DI 341
Query: 118 AQAIDGYVKERKWRVTGLVIGSYLSGWVQDGG----SNWWMRFLRDVIFYRFLVG 168
A A+ Y +R RV LV+ + + G + W + LR+ R + G
Sbjct: 342 AAALREYEAQRCDRVRDLVLKARKRCDITHGKDXQLTEAWYQELREETGERIING 396
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 23/106 (21%)
Query: 29 PFYSVIVRRSDASTLHWAPLMFRH-----PWNVFFGNLSKGNVTVAGDAMHPMTPDLGQG 83
P +V++SD + +PL R PW VT+ GDA+H TP G G
Sbjct: 280 PSLHTLVQQSDXENI--SPLHLRSXPHLLPWK-------SSTVTLLGDAIHNXTPXTGSG 330
Query: 84 GCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERK 129
AL DA++L + + ++ +G + +AI Y ++ +
Sbjct: 331 ANTALRDALLLTQKLASV---------ASGHEELVKAISDYEQQXR 367
>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
Involved In Angucycline Biosynthesis
Length = 500
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 28/143 (19%)
Query: 54 WNVFFGNLSK-------GNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTK 106
W FGN ++ G V +AGD+ H P GQG +++DAV LG +G ++ T
Sbjct: 260 WVSAFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTA 319
Query: 107 GHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVI----- 161
+ +D Y ER L++ + G + G ++ LRDV+
Sbjct: 320 ----------TEELLDSYHSERHAVGKRLLMNTQAQGLLFLSGPE--VQPLRDVLTELIQ 367
Query: 162 ---FYRFLVGGVLGNKVTGYDCG 181
R L G V G ++T YD G
Sbjct: 368 YGEVARHLAGMVSGLEIT-YDVG 389
>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|B Chain B, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|C Chain C, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus
Length = 570
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 47 PLMFRHP--WNVFFGNLSK-------GNVTVAGDAMHPMTPDLGQGGCQALEDAVVLG 95
PL P W FG+ S+ G V +AGDA H P GQG L+DAV LG
Sbjct: 296 PLTLTEPVSWLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLG 353
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHI 98
++G V + GDA H M P L QG A+ +A L + +
Sbjct: 315 TRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDL 351
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHI 98
++G V + GDA H M P L QG A+ +A L + +
Sbjct: 279 TRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDL 315
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHI 98
++G V + GDA H M P L QG A+ +A L + +
Sbjct: 279 TRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDL 315
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHI 98
++G V + GDA H M P L QG A+ +A L + +
Sbjct: 279 TRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDL 315
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 65 NVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKG----HIATTGDNNVAQA 120
V +AGDA H +P GQG +++D+ LG + +L K H ++ VAQ
Sbjct: 343 RVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQCAPELLHTYSSERQVVAQQ 402
Query: 121 IDGYVKERKW 130
+ + +R+W
Sbjct: 403 LIDF--DREW 410
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 66 VTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100
+T+ GDA H M P GQG L DA++L ++ +
Sbjct: 296 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLAD 330
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 66 VTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100
+T+ GDA H M P GQG L DA++L ++ +
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLAD 350
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 66 VTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100
+T+ GDA H M P GQG L DA++L ++ +
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLAD 350
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 66 VTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100
+T+ GDA H M P GQG L DA++L ++ +
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLAD 350
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 41 STLH-WAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIG 99
+ LH P R + VFF LS + A+ ++G G C L D ++ RH+
Sbjct: 356 AELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMG-GRCVTLLDGDIVRRHLS 414
Query: 100 NLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQ 146
+ L +K H D NV + G+V + G+ I + ++ + Q
Sbjct: 415 SELGFSKAH----RDVNVRRI--GFVASEITKNRGIAICAPIAPYRQ 455
>pdb|1MWK|A Chain A, Parm From Plasmid R1 Apo Form
pdb|1MWK|B Chain B, Parm From Plasmid R1 Apo Form
pdb|1MWM|A Chain A, Parm From Plasmid R1 Adp Form
pdb|1MWM|B Chain B, Parm From Plasmid R1 Adp Form
pdb|2QU4|A Chain A, Model For Bacterial Parm Filament
pdb|2ZGY|A Chain A, Parm With Gdp
pdb|2ZGY|B Chain B, Parm With Gdp
pdb|2ZGZ|A Chain A, Parm With Gmppnp
pdb|2ZGZ|B Chain B, Parm With Gmppnp
pdb|2ZHC|A Chain A, Parm Filament
pdb|3IKU|A Chain A, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|B Chain B, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|C Chain C, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|D Chain D, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|E Chain E, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|F Chain F, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|G Chain G, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|H Chain H, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|I Chain I, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|J Chain J, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|K Chain K, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|L Chain L, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKY|A Chain A, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|B Chain B, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|C Chain C, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|D Chain D, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|E Chain E, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|F Chain F, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|G Chain G, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|H Chain H, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|I Chain I, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|J Chain J, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|K Chain K, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|L Chain L, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|4A6J|A Chain A, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|B Chain B, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|C Chain C, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|D Chain D, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|E Chain E, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|F Chain F, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|G Chain G, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|H Chain H, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|I Chain I, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|J Chain J, Structural Model Of Parm Filament Based On Cryoem Map
Length = 320
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 44 HWAPLMFRHPWNVFFGNLSKGNVTVAGD--AMHPMTPD 79
H +P F+ W V FG+ N T+ G+ + P++PD
Sbjct: 26 HISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPD 63
>pdb|4A62|A Chain A, Parm From R1 Plasmid In Complex With Peptide From C-
Terminus Of Parr
pdb|4A62|B Chain B, Parm From R1 Plasmid In Complex With Peptide From C-
Terminus Of Parr
Length = 320
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 44 HWAPLMFRHPWNVFFGNLSKGNVTVAGD--AMHPMTPD 79
H +P F+ W V FG+ N T+ G+ + P++PD
Sbjct: 26 HISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPD 63
>pdb|4A61|A Chain A, Parm From Plasmid R1 In Complex With Amppnp
Length = 326
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 44 HWAPLMFRHPWNVFFGNLSKGNVTVAGD--AMHPMTPD 79
H +P F+ W V FG+ N T+ G+ + P++PD
Sbjct: 32 HISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPD 69
>pdb|1TMQ|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase In
Complex With Ragi Bifunctional Inhibitor
pdb|1CLV|A Chain A, Yellow Meal Worm Alpha-Amylase In Complex With The
Amaranth Alpha-Amylase Inhibitor
pdb|1JAE|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase
Length = 471
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 106 KGHIATTGDNNVAQAIDGYVKERKWR-VTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYR 164
G++ + G N+ +GYV E +WR V G+V + + NWW + F R
Sbjct: 340 SGNLISPGINDDNTCSNGYVCEHRWRQVYGMV--GFRNAVEGTQVENWWSNDDNQIAFSR 397
Query: 165 -------FLVGGVLGNKV-TGYDCGKLPDVSLGEM 191
F GG L + TG G DV GE+
Sbjct: 398 GSQGFVAFTNGGDLNQNLNTGLPAGTYCDVISGEL 432
>pdb|1VIW|A Chain A, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
Length = 471
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 106 KGHIATTGDNNVAQAIDGYVKERKWR-VTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYR 164
G++ + G N+ +GYV E +WR V G+V + + NWW + F R
Sbjct: 340 SGNLISPGINDDNTCSNGYVCEHRWRQVYGMV--GFRNAVEGTQVENWWSNDDNQIAFSR 397
Query: 165 -------FLVGGVLGNKV-TGYDCGKLPDVSLGEM 191
F GG L + TG G DV GE+
Sbjct: 398 GSQGFVAFTNGGDLNQNLNTGLPAGTYCDVISGEL 432
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 47 PLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTK 106
P++ R P + +G +T+ GDA H M P G QA+ D + L
Sbjct: 290 PMVDRDP----LPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELA----------- 334
Query: 107 GHIATTGDNNVAQAIDGYVKERKWRVTGLVIGS 139
A + +VA A+ Y + R+ +++ +
Sbjct: 335 --AALARNADVAAALREYEEARRPTANKIILAN 365
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 66 VTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLL 102
V +AGDA H +P GQG ++ D LG +G +L
Sbjct: 353 VFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVL 389
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 66 VTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLL 102
V +AGDA H +P GQG ++ D LG +G +L
Sbjct: 352 VFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVL 388
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 115 NNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQD--------GGSNWWMRFLRDVIFYRFL 166
+ +A+A D + KW++ +IGS+L ++++ GG+ W FL++ F L
Sbjct: 22 DRIARAYDSXYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVL 81
Query: 167 V 167
V
Sbjct: 82 V 82
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 27/144 (18%)
Query: 28 PPFYSVIV---RRSDASTLHWAPLMFRHPWNVFFGNLSK-------GNVTVAGDAMHPMT 77
PP+ V R + H P+ W FG+ ++ G V +AGD+ H
Sbjct: 237 PPYQEVAAAWQRLTGQDISHGEPV-----WVSAFGDPARQVSAYRRGRVLLAGDSAHVHL 291
Query: 78 PDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 137
P GQG +++D+V LG + A A +D Y +ER L++
Sbjct: 292 PAGGQGMNVSVQDSVNLGWKLA----------AVVSGRAPAGLLDTYHEERHPVGRRLLM 341
Query: 138 GSYLSGWVQDGGSNWWMRFLRDVI 161
+ G + G M+ LRDV+
Sbjct: 342 NTQAQGMLFLSGDE--MQPLRDVL 363
>pdb|3JXP|A Chain A, Crystal Structure Of The Coenzyme Pqq Synthesis Protein
(pqqb) From Pseudomonas Putida
Length = 321
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 89 EDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERK 129
ED + R +G + GH+A G + +DG+ ++RK
Sbjct: 227 EDDEMQRRGVGTRTGREMGHLAQNGPGGTLEVLDGFPRQRK 267
>pdb|1VRQ|D Chain D, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96 In Complex With Folinic
Acid
pdb|1X31|D Chain D, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96
pdb|3AD7|D Chain D, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Methylthio Acetate
pdb|3AD8|D Chain D, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Pyrrole 2-Carboxylate
pdb|3AD9|D Chain D, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 Sarcosine-Reduced Form
pdb|3ADA|D Chain D, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Sulfite
Length = 99
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 106 KGHIATTGDNNVAQAIDGYVKERKWR----VTGLVIGSYLSGWVQDGGSNWWMRFLRDVI 161
+ H+A D N + +++W G G + WV GG W LRD +
Sbjct: 22 EAHVAYPEDPNA-------LSDKEWSRYLFYRGNKKGIFAERWVHSGGCRKWFNALRDTV 74
Query: 162 FYRF 165
Y F
Sbjct: 75 SYEF 78
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 42 TLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDA 91
+LHW P+ + W +++ V VA +GGCQA+ D
Sbjct: 179 SLHWVPVTVQQYWQFTVDSVTISGVVVA-----------CEGGCQAILDT 217
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHI 98
++G V + GDA H P L QG A +A L + +
Sbjct: 315 TRGKVALVGDAAHAXCPALAQGAGCAXVNAFSLSQDL 351
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 42 TLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDA 91
+LHW P+ + W +++ V VA +GGCQA+ D
Sbjct: 179 SLHWVPVTVQQYWQFTVDSVTISGVVVA-----------CEGGCQAILDT 217
>pdb|3HIJ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
Length = 292
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 81 GQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTG-LVIGS 139
G+ E+ V L RH+ +++ K IA TG NN +ID K + V +++
Sbjct: 48 GESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAP 107
Query: 140 YLSGWVQDG 148
Y + Q+G
Sbjct: 108 YYNKPSQEG 116
>pdb|1XKY|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XL9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis
Length = 301
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 81 GQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTG-LVIGS 139
G+ E+ V L RH+ +++ K IA TG NN +ID K + V +++
Sbjct: 57 GESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAP 116
Query: 140 YLSGWVQDG 148
Y + Q+G
Sbjct: 117 YYNKPSQEG 125
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 66 VTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100
+T GDA H P GQG L DA++L ++ +
Sbjct: 296 ITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLAD 330
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 66 VTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100
+T GDA H P GQG L DA++L ++ +
Sbjct: 317 ITXIGDAAHLXPPFAGQGVNSGLVDALILSDNLAD 351
>pdb|1XTO|A Chain A, Crystal Structure Of The Coenzyme Pqq Synthesis Protein
(Pqqb) From Pseudomonas Putida, Northeast Structural
Genomics Target Ppr6
Length = 311
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 89 EDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERK 129
ED R +G + GH+A G + +DG+ ++RK
Sbjct: 225 EDDEXQRRGVGTRTGREXGHLAQNGPGGXLEVLDGFPRQRK 265
>pdb|4HJH|A Chain A, Iodide Sad Phased Crystal Structure Of A
Phosphoglucomutase From Brucella Melitensis Complexed
With Glucose-6-Phosphate
pdb|4HJH|B Chain B, Iodide Sad Phased Crystal Structure Of A
Phosphoglucomutase From Brucella Melitensis Complexed
With Glucose-6-Phosphate
Length = 481
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDA 91
G L KG+ G + P +PD+ A+EDA
Sbjct: 44 GQLQKGDKVFVGRDLRPSSPDIAALAMGAIEDA 76
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 63 KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAID 122
+G +T+ GDA H P G QA+ D + L A + +VA A+
Sbjct: 302 RGRITLLGDAAHLXYPXGANGASQAILDGIELA-------------AALARNADVAAALR 348
Query: 123 GYVKERKWRVTGLVIGS 139
Y + R+ +++ +
Sbjct: 349 EYEEARRPTANKIILAN 365
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,745,442
Number of Sequences: 62578
Number of extensions: 289109
Number of successful extensions: 674
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 43
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)