Query 036400
Match_columns 198
No_of_seqs 209 out of 1514
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 12:17:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03219 salicylate_mono sali 99.9 4.6E-25 1E-29 192.3 12.6 127 12-155 255-381 (414)
2 PRK06475 salicylate hydroxylas 99.9 7E-24 1.5E-28 184.2 14.5 143 16-181 251-395 (400)
3 PRK06753 hypothetical protein; 99.9 2.3E-23 5.1E-28 178.7 14.6 132 15-166 226-357 (373)
4 PRK07588 hypothetical protein; 99.9 1.4E-23 3.1E-28 181.5 13.0 145 9-173 229-374 (391)
5 PRK08163 salicylate hydroxylas 99.9 1.9E-23 4.1E-28 180.7 13.7 144 16-180 245-390 (396)
6 PRK06847 hypothetical protein; 99.9 1E-22 2.2E-27 174.8 14.8 135 11-164 232-371 (375)
7 PRK05714 2-octaprenyl-3-methyl 99.9 4.1E-23 8.9E-28 179.4 12.4 126 43-181 269-394 (405)
8 PRK07236 hypothetical protein; 99.9 2.2E-22 4.9E-27 173.9 12.5 119 12-149 260-378 (386)
9 PLN02927 antheraxanthin epoxid 99.9 8E-22 1.7E-26 179.8 14.4 128 11-146 319-446 (668)
10 PRK08849 2-octaprenyl-3-methyl 99.9 2.9E-22 6.3E-27 173.2 10.5 109 59-180 274-382 (384)
11 KOG2614 Kynurenine 3-monooxyge 99.9 3.1E-22 6.7E-27 170.4 10.0 173 10-186 235-414 (420)
12 PRK05868 hypothetical protein; 99.9 4.7E-22 1E-26 171.5 11.1 131 12-162 235-367 (372)
13 PRK06996 hypothetical protein; 99.9 3.9E-22 8.4E-27 173.2 9.3 108 59-180 286-393 (398)
14 PRK06617 2-octaprenyl-6-methox 99.9 4.2E-22 9.1E-27 171.7 9.2 117 43-182 257-373 (374)
15 PRK08773 2-octaprenyl-3-methyl 99.9 1.2E-21 2.6E-26 169.5 10.6 115 59-181 277-391 (392)
16 PRK08850 2-octaprenyl-6-methox 99.9 3.1E-21 6.7E-26 167.8 11.5 115 59-181 277-391 (405)
17 PRK08013 oxidoreductase; Provi 99.9 2.6E-21 5.7E-26 168.1 10.9 116 58-181 276-391 (400)
18 PRK07364 2-octaprenyl-6-methox 99.9 3.1E-21 6.8E-26 167.7 10.9 151 11-181 253-403 (415)
19 PRK08020 ubiF 2-octaprenyl-3-m 99.8 3.1E-21 6.8E-26 166.7 9.6 115 59-181 276-390 (391)
20 PRK07538 hypothetical protein; 99.8 5.4E-21 1.2E-25 166.7 11.0 110 14-143 251-363 (413)
21 PRK07333 2-octaprenyl-6-methox 99.8 4.5E-21 9.9E-26 166.0 10.4 115 59-181 275-389 (403)
22 PRK07494 2-octaprenyl-6-methox 99.8 6.7E-21 1.4E-25 164.4 9.2 124 43-182 264-387 (388)
23 PRK06183 mhpA 3-(3-hydroxyphen 99.8 1.3E-20 2.9E-25 169.5 10.8 104 58-172 280-383 (538)
24 TIGR02360 pbenz_hydroxyl 4-hyd 99.8 4E-20 8.7E-25 160.3 12.6 112 59-181 274-387 (390)
25 PRK09126 hypothetical protein; 99.8 1.9E-20 4.1E-25 161.7 9.8 110 59-176 275-384 (392)
26 TIGR01988 Ubi-OHases Ubiquinon 99.8 3.8E-20 8.2E-25 158.9 11.5 141 11-171 235-375 (385)
27 TIGR01989 COQ6 Ubiquinone bios 99.8 8.1E-20 1.8E-24 160.6 13.8 107 59-173 328-434 (437)
28 PRK06185 hypothetical protein; 99.8 3.4E-20 7.4E-25 160.9 11.0 152 17-184 242-397 (407)
29 PRK08243 4-hydroxybenzoate 3-m 99.8 4.7E-20 1E-24 159.8 10.7 104 59-173 274-379 (392)
30 PRK08132 FAD-dependent oxidore 99.8 3.8E-20 8.3E-25 166.8 10.3 97 58-165 293-389 (547)
31 TIGR01984 UbiH 2-polyprenyl-6- 99.8 7.9E-20 1.7E-24 157.3 11.2 103 59-172 271-373 (382)
32 PRK07608 ubiquinone biosynthes 99.8 8.7E-20 1.9E-24 157.3 11.2 110 59-177 275-384 (388)
33 PRK07045 putative monooxygenas 99.8 1.4E-19 3.1E-24 156.4 12.6 130 17-162 242-373 (388)
34 COG0654 UbiH 2-polyprenyl-6-me 99.8 6.1E-20 1.3E-24 159.0 10.3 96 59-165 273-368 (387)
35 PRK05732 2-octaprenyl-6-methox 99.8 1.6E-19 3.4E-24 155.9 11.9 114 59-180 277-390 (395)
36 PRK06834 hypothetical protein; 99.8 7.4E-19 1.6E-23 156.6 13.0 97 58-166 259-355 (488)
37 PRK08255 salicylyl-CoA 5-hydro 99.8 1.3E-18 2.9E-23 162.3 11.7 135 11-163 218-360 (765)
38 PLN02985 squalene monooxygenas 99.8 8.5E-18 1.8E-22 150.6 14.6 142 13-167 278-422 (514)
39 PTZ00367 squalene epoxidase; P 99.7 3.3E-17 7.1E-22 148.1 14.8 141 14-167 290-436 (567)
40 PF01494 FAD_binding_3: FAD bi 99.7 3.3E-18 7.2E-23 144.1 7.6 71 59-139 286-356 (356)
41 PRK08244 hypothetical protein; 99.7 1.7E-17 3.6E-22 147.9 11.3 94 58-163 266-359 (493)
42 PRK06126 hypothetical protein; 99.7 9.2E-18 2E-22 151.3 9.6 80 58-147 297-376 (545)
43 PRK06184 hypothetical protein; 99.7 1.4E-17 3E-22 148.8 7.9 79 58-147 275-353 (502)
44 PRK08294 phenol 2-monooxygenas 99.7 3.1E-17 6.7E-22 150.3 8.5 78 62-149 338-415 (634)
45 PRK07190 hypothetical protein; 99.7 6.1E-17 1.3E-21 144.3 8.6 80 58-147 268-348 (487)
46 PF08491 SE: Squalene epoxidas 99.4 1.8E-11 3.9E-16 100.8 14.6 145 11-168 81-226 (276)
47 KOG3855 Monooxygenase involved 99.2 2E-12 4.3E-17 110.6 -2.7 112 59-178 365-476 (481)
48 TIGR02032 GG-red-SF geranylger 99.1 3.6E-11 7.7E-16 99.2 4.4 40 59-98 256-295 (295)
49 TIGR02023 BchP-ChlP geranylger 99.1 8.2E-10 1.8E-14 95.7 10.5 79 59-148 259-337 (388)
50 PRK11445 putative oxidoreducta 99.1 3.2E-10 7E-15 97.1 7.7 82 61-164 261-342 (351)
51 TIGR01790 carotene-cycl lycope 98.9 3.5E-09 7.6E-14 91.4 8.9 63 61-134 259-321 (388)
52 PLN00093 geranylgeranyl diphos 98.9 6.5E-09 1.4E-13 92.1 10.6 84 59-149 304-387 (450)
53 TIGR02028 ChlP geranylgeranyl 98.9 1.3E-08 2.9E-13 88.7 10.9 84 59-149 265-348 (398)
54 TIGR01789 lycopene_cycl lycope 98.6 7.6E-08 1.7E-12 83.3 5.3 64 63-138 250-313 (370)
55 KOG1298 Squalene monooxygenase 98.0 0.00015 3.3E-09 62.6 12.2 152 3-166 268-421 (509)
56 PRK10015 oxidoreductase; Provi 97.9 4.1E-05 8.8E-10 67.6 8.4 81 60-149 291-374 (429)
57 PRK10157 putative oxidoreducta 97.9 8.5E-05 1.8E-09 65.5 9.0 80 60-148 291-372 (428)
58 COG0644 FixC Dehydrogenases (f 97.8 0.00014 3E-09 63.4 8.7 72 61-144 266-337 (396)
59 PF04820 Trp_halogenase: Trypt 97.3 0.00084 1.8E-08 59.8 7.1 85 60-158 312-397 (454)
60 PLN02697 lycopene epsilon cycl 96.8 0.011 2.4E-07 53.7 9.7 64 63-128 371-436 (529)
61 PLN02463 lycopene beta cyclase 95.1 0.057 1.2E-06 48.1 6.3 43 62-104 292-334 (447)
62 PF05834 Lycopene_cycl: Lycope 92.1 0.3 6.6E-06 42.2 5.2 81 10-100 210-290 (374)
63 PF10819 DUF2564: Protein of u 74.6 7 0.00015 26.2 4.0 32 69-100 19-51 (79)
64 PF10340 DUF2424: Protein of u 36.2 25 0.00053 30.8 1.9 19 62-89 193-211 (374)
65 TIGR01292 TRX_reduct thioredox 32.1 48 0.001 26.8 3.0 34 63-100 265-298 (300)
66 TIGR03169 Nterm_to_SelD pyridi 31.6 82 0.0018 26.7 4.4 42 62-103 270-311 (364)
67 PRK01909 pdxA 4-hydroxythreoni 31.5 57 0.0012 28.0 3.4 37 62-103 197-233 (329)
68 TIGR00557 pdxA 4-hydroxythreon 30.9 61 0.0013 27.7 3.4 37 62-103 194-230 (320)
69 PF07687 M20_dimer: Peptidase 30.9 46 0.001 22.6 2.4 35 63-100 8-42 (111)
70 PRK05312 pdxA 4-hydroxythreoni 30.7 58 0.0013 28.1 3.3 37 62-103 206-242 (336)
71 PRK00232 pdxA 4-hydroxythreoni 29.6 61 0.0013 27.9 3.2 37 62-103 201-237 (332)
72 PRK03371 pdxA 4-hydroxythreoni 28.7 68 0.0015 27.5 3.4 37 62-103 200-236 (326)
73 PRK02746 pdxA 4-hydroxythreoni 28.1 69 0.0015 27.7 3.3 38 62-104 204-241 (345)
74 TIGR02730 carot_isom carotene 27.9 79 0.0017 28.3 3.9 32 64-100 459-490 (493)
75 PRK12770 putative glutamate sy 27.8 1.1E+02 0.0024 25.9 4.6 35 63-102 315-349 (352)
76 PRK03743 pdxA 4-hydroxythreoni 27.0 77 0.0017 27.3 3.4 37 62-103 201-237 (332)
77 TIGR02733 desat_CrtD C-3',4' d 26.8 83 0.0018 28.0 3.8 32 64-100 459-490 (492)
78 COG1995 PdxA Pyridoxal phospha 26.7 73 0.0016 27.4 3.1 38 62-104 200-237 (332)
79 PF04922 DIE2_ALG10: DIE2/ALG1 25.5 39 0.00085 29.6 1.4 25 63-88 222-247 (379)
80 PRK07233 hypothetical protein; 25.0 1E+02 0.0022 26.5 3.9 35 63-100 395-429 (434)
81 smart00035 CLa CLUSTERIN alpha 23.7 3.9E+02 0.0084 21.5 6.5 17 84-100 96-112 (216)
82 TIGR01891 amidohydrolases amid 23.0 95 0.0021 26.4 3.3 32 65-99 174-205 (363)
83 TIGR02734 crtI_fam phytoene de 23.0 1.2E+02 0.0026 27.1 4.1 33 63-100 458-490 (502)
84 PRK12416 protoporphyrinogen ox 23.0 1.3E+02 0.0028 26.5 4.2 33 63-101 428-460 (463)
85 PF11328 DUF3130: Protein of u 22.8 2.6E+02 0.0057 19.2 5.7 60 68-142 17-78 (90)
86 PRK03946 pdxA 4-hydroxythreoni 22.8 67 0.0015 27.3 2.3 34 63-102 177-210 (307)
87 PF01593 Amino_oxidase: Flavin 22.6 1.1E+02 0.0025 25.5 3.7 32 64-98 418-449 (450)
88 KOG3035 Isoamyl acetate-hydrol 22.1 93 0.002 25.3 2.8 30 62-92 5-34 (245)
89 PTZ00318 NADH dehydrogenase-li 21.7 1.7E+02 0.0038 25.5 4.8 41 63-103 308-348 (424)
90 KOG4479 Transcription factor e 21.3 1.7E+02 0.0036 19.9 3.4 31 8-38 13-44 (92)
91 COG5654 Uncharacterized conser 20.4 47 0.001 25.4 0.8 22 64-85 11-32 (163)
No 1
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.92 E-value=4.6e-25 Score=192.26 Aligned_cols=127 Identities=24% Similarity=0.274 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHHH
Q 036400 12 PELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDA 91 (198)
Q Consensus 12 ~~~~k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa 91 (198)
.+..++++.+.|. +|++.++++++.++ ....|++++..+. ++|++|||+|||||||+|+|+.|||+|+|||||
T Consensus 255 ~~~~~~~l~~~~~-~~~~~v~~~~~~~~--~~~~~~~~~~~~~----~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA 327 (414)
T TIGR03219 255 REATQREMLDAFA-GWGDAARALLECIP--APTLWALHDLAEL----PGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDA 327 (414)
T ss_pred CccCHHHHHHHhc-CCCHHHHHHHHhCC--CCCceeeeecccc----cceeeCcEEEEEcccCCCCCCcCcchHhHHHHH
Confidence 3345778888998 99999999999886 3345667666554 489999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHH
Q 036400 92 VVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMR 155 (198)
Q Consensus 92 ~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~ 155 (198)
.+|+++|.....+ .. +++.+|+.||+.|++|+..+++.|+.++++++.. ++...
T Consensus 328 ~~La~~L~~~~~~-------~~--~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~ 381 (414)
T TIGR03219 328 YFLARLLGDTELE-------AG--DLPALLEAYDDVRRPRACRVQRTSREAGELYELR-DPAVG 381 (414)
T ss_pred HHHHHHHHhhccC-------cc--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-Chhcc
Confidence 9999999864321 23 7899999999999999999999999999999887 64433
No 2
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.91 E-value=7e-24 Score=184.17 Aligned_cols=143 Identities=20% Similarity=0.241 Sum_probs=112.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHH
Q 036400 16 QKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLG 95 (198)
Q Consensus 16 k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La 95 (198)
++.+.+.|. +|.+.+..+++.++ .+..+|++...+. +.|+.|||+|||||||+|+|+.|||+|+||+||.+|+
T Consensus 251 ~~~l~~~~~-~~~~~~~~~i~~~~--~~~~~~l~~~~~~----~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La 323 (400)
T PRK06475 251 KAHLKSIYA-DWNKPVLQILAAID--EWTYWPLFEMADA----QFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALA 323 (400)
T ss_pred HHHHHHHhc-CCChHHHHHHhcCC--ceeECcCcccCCC----cceecCCEEEEecccccCCchhhhhHHHHHHHHHHHH
Confidence 467788888 99999999998876 4556777765542 2457899999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccC--
Q 036400 96 RHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGN-- 173 (198)
Q Consensus 96 ~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-- 173 (198)
++|.. . ++..+|+.|++.|++|++.++..|+....+++. +++....|+..+.......+.+.
T Consensus 324 ~~L~~------------~--~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~~~~~ 387 (400)
T PRK06475 324 EALDS------------D--DQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHA--TGIFALGRNMLFAIRSPESFLKDLD 387 (400)
T ss_pred HHHhc------------C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHhhcChhhhccccC
Confidence 99953 1 577999999999999999999999755545454 45667789888875544444333
Q ss_pred ccccccCC
Q 036400 174 KVTGYDCG 181 (198)
Q Consensus 174 ~~~~~~~~ 181 (198)
|++.|++.
T Consensus 388 ~~~~~~~~ 395 (400)
T PRK06475 388 WLYGYDAA 395 (400)
T ss_pred ccccCchh
Confidence 77776654
No 3
>PRK06753 hypothetical protein; Provisional
Probab=99.90 E-value=2.3e-23 Score=178.75 Aligned_cols=132 Identities=22% Similarity=0.300 Sum_probs=113.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHH
Q 036400 15 IQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVL 94 (198)
Q Consensus 15 ~k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~L 94 (198)
.++.+.+.|+ +|++.++.+++..+...+..++++...+. ++|+.|||+|||||||+|+|+.|||+|+||+||..|
T Consensus 226 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L 300 (373)
T PRK06753 226 GKPHLQAYFN-HYPNEVREILDKQSETGILHHDIYDLKPL----KSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVL 300 (373)
T ss_pred cHHHHHHHHh-cCChHHHHHHHhCCcccceeecccccccc----ccccCCCEEEEecccccCCCCcCccHHHHHHHHHHH
Confidence 3567788888 89999999998776444455566655554 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHhh
Q 036400 95 GRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFL 166 (198)
Q Consensus 95 a~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~ 166 (198)
+++|.. . ++.++|+.|++.|++++..+++.|+..+++++.+ ++....+|+.+++...
T Consensus 301 ~~~L~~------------~--~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~l~~~~ 357 (373)
T PRK06753 301 ANCLNA------------Y--DFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIE-SKLLVALRNRVMKRMP 357 (373)
T ss_pred HHHhhh------------c--cHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcC-CchHHHHHHHHHHhCC
Confidence 999953 1 5789999999999999999999999999999998 8888999999998553
No 4
>PRK07588 hypothetical protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=181.49 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=114.2
Q ss_pred CCChHHHHHHHHHHHhccCCHHHHHHHHhCCCC-CcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhH
Q 036400 9 AGNPELIQKEVLEKYAKVLPPFYSVIVRRSDAS-TLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQA 87 (198)
Q Consensus 9 ~~~~~~~k~~l~~~~~~~~~~~~~~li~~~~~~-~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~A 87 (198)
..+.++.++.+.+.|. +|.+....+++..+.. .+...++ ...+ .++|+.|||+|||||||+|+|+.|||+|+|
T Consensus 229 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~w~~grv~LiGDAAH~~~P~~GqG~n~a 302 (391)
T PRK07588 229 PLTPAEEKQLLRDQFG-DVGWETPDILAALDDVEDLYFDVV-SQIR----MDRWSRGRVALVGDAAACPSLLGGEGSGLA 302 (391)
T ss_pred cCCHHHHHHHHHHHhc-cCCccHHHHHHhhhcccchheeee-eeec----cCccccCCEEEEEccccCCCCccCCcHHHH
Confidence 3456778888999998 8776666666654421 2221211 1112 247999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHhhh
Q 036400 88 LEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLV 167 (198)
Q Consensus 88 ieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 167 (198)
|+||..|+++|.... . +...+|+.|++.|++++..++..++.+.++++++ +++...+|+.+++.+.
T Consensus 303 ieDa~~La~~L~~~~----------~--~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~~~~~~- 368 (391)
T PRK07588 303 ITEAYVLAGELARAG----------G--DHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPK-TRFGLYVRNIAMKIMN- 368 (391)
T ss_pred HHHHHHHHHHHHhcc----------C--CHHHHHHHHHHHHHHHHHHHHhhcccccccccCC-CHHHHHHHHHHHHHhc-
Confidence 999999999997521 2 5788999999999999999999999999999998 8999999999998765
Q ss_pred hhhccC
Q 036400 168 GGVLGN 173 (198)
Q Consensus 168 ~~~~~~ 173 (198)
...++.
T Consensus 369 ~~~~~~ 374 (391)
T PRK07588 369 LPPVAD 374 (391)
T ss_pred cchhhh
Confidence 344444
No 5
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.90 E-value=1.9e-23 Score=180.67 Aligned_cols=144 Identities=26% Similarity=0.367 Sum_probs=115.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHH
Q 036400 16 QKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLG 95 (198)
Q Consensus 16 k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La 95 (198)
++++.+.|. +|.|.+..+++..+ .+..+.++++.+. ++|+.|||+|||||||+|+|+.|||+|+||+||..|+
T Consensus 245 ~~~l~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La 317 (396)
T PRK08163 245 KEEVLSYFE-GIHPRPRQMLDKPT--SWKRWATADREPV----AKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLG 317 (396)
T ss_pred HHHHHHHHc-CCChHHHHHHhcCC--ceeEccccCCCcc----cccccCcEEEEecccccCCcchhccHHHHHHHHHHHH
Confidence 567788898 99999999987654 3334445454444 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccC--
Q 036400 96 RHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGN-- 173 (198)
Q Consensus 96 ~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-- 173 (198)
++|... .. +++.+|+.|++.|++|+..++..++.++++++.. + ....+|+.++.......+...
T Consensus 318 ~~L~~~----------~~--~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~-~-~~~~~r~~~~~~~~~~~~~~~~~ 383 (396)
T PRK08163 318 KALEGC----------DG--DAEAAFALYESVRIPRTARVVLSAREMGRIYHAK-G-VERQVRNLLWKGRTQEQFYDALE 383 (396)
T ss_pred HHHHhc----------cc--cHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC-C-HHHHHHHHHhhccChhhhhhhcC
Confidence 999752 12 6889999999999999999999999999999876 4 678889988876544433333
Q ss_pred ccccccC
Q 036400 174 KVTGYDC 180 (198)
Q Consensus 174 ~~~~~~~ 180 (198)
|++.|+.
T Consensus 384 ~~~~~~~ 390 (396)
T PRK08163 384 WLYGWKE 390 (396)
T ss_pred ccccCCc
Confidence 6655554
No 6
>PRK06847 hypothetical protein; Provisional
Probab=99.90 E-value=1e-22 Score=174.79 Aligned_cols=135 Identities=23% Similarity=0.291 Sum_probs=108.0
Q ss_pred ChHHHHHHHHHHHhccCCH-HHHHHHHhCCC-CCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHH
Q 036400 11 NPELIQKEVLEKYAKVLPP-FYSVIVRRSDA-STLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQAL 88 (198)
Q Consensus 11 ~~~~~k~~l~~~~~~~~~~-~~~~li~~~~~-~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~Ai 88 (198)
+.+.+++.+.+.+. .|++ .+..+++.... ..+..+++...... .+|+.|||+|||||||+|+|+.|||+|+||
T Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~grv~LiGDAaH~~~P~~GqG~n~ai 306 (375)
T PRK06847 232 EPDTLAALLRELLA-PFGGPVLQELREQITDDAQVVYRPLETLLVP----APWHRGRVVLIGDAAHATTPHLAQGAGMAI 306 (375)
T ss_pred ChHHHHHHHHHHHh-hcCchHHHHHHHhcCCccceeeccHhhccCC----CCccCCeEEEEechhccCCCCccccHHHHH
Confidence 45667788888888 8886 56666655432 23444555543332 369999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCh---HHHHHHHHHHHH
Q 036400 89 EDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNW---WMRFLRDVIFYR 164 (198)
Q Consensus 89 eDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~---~~~~~r~~~~~~ 164 (198)
+||..|+++|... . +++++|+.|+++|++|++.+++.|+.+++++... ++ ....+|++++..
T Consensus 307 eDA~~La~~L~~~-----------~--~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 371 (375)
T PRK06847 307 EDAIVLAEELARH-----------D--SLEAALQAYYARRWERCRMVVEASARIGRIEIEG-GDKAEHAGLMRESMELL 371 (375)
T ss_pred HHHHHHHHHHhhC-----------C--cHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCC-CCccchHHHHHHHHHHh
Confidence 9999999999751 2 6889999999999999999999999999998766 55 667788887664
No 7
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.89 E-value=4.1e-23 Score=179.35 Aligned_cols=126 Identities=17% Similarity=0.106 Sum_probs=106.4
Q ss_pred cccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHH
Q 036400 43 LHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAID 122 (198)
Q Consensus 43 ~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~ 122 (198)
...++++.+. .++|+.|||+|||||||+|+|++|||+|+||+||.+|+++|..+... ..+.....+|+
T Consensus 269 ~~~~~l~~~~-----~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~-------g~~~~~~~~L~ 336 (405)
T PRK05714 269 RLCVPLRQRH-----AKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAER-------GERLADVRVLS 336 (405)
T ss_pred ccEEecceee-----hhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhc-------CCCcccHHHHH
Confidence 3456766543 25899999999999999999999999999999999999999865421 11012357999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccccccCC
Q 036400 123 GYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCG 181 (198)
Q Consensus 123 ~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 181 (198)
.||+.|++++..++..++.+.++++.+ +++...+|+..++.+...+.+|++++++..|
T Consensus 337 ~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g 394 (405)
T PRK05714 337 RFERRRMPHNLALMAAMEGFERLFQAD-PLPLRWLRNTGLKLVDQMPEAKALFVRQALG 394 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHhhCHHHHHHHHHHHhc
Confidence 999999999999999999999999998 8899999999999888888888877877765
No 8
>PRK07236 hypothetical protein; Provisional
Probab=99.88 E-value=2.2e-22 Score=173.89 Aligned_cols=119 Identities=19% Similarity=0.250 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHHH
Q 036400 12 PELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDA 91 (198)
Q Consensus 12 ~~~~k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa 91 (198)
+++.++.+.+.+...|+|.++++++.++ ..+.+++++... ++|..|||+|||||||+|+|+.|||+|+||+||
T Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA 332 (386)
T PRK07236 260 RDDVLAELRDDAAELLAPVFAELVEATA--QPFVQAIFDLEV-----PRMAFGRVALLGDAAFVARPHTAAGVAKAAADA 332 (386)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHhhCc--CchhhhhhcccC-----cccccCcEEEEecccccCCCcchhhHHHHHHHH
Confidence 3556677877777349999999999886 334456654332 479999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 036400 92 VVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGG 149 (198)
Q Consensus 92 ~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~ 149 (198)
+.|+++|.... . ++..+|+.|++.|++|+..+++.|+.++..++..
T Consensus 333 ~~La~~L~~~~----------~--~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~ 378 (386)
T PRK07236 333 VALAEALAAAA----------G--DIDAALAAWEAERLAVGAAIVARGRRLGARLQAQ 378 (386)
T ss_pred HHHHHHHHhcc----------c--chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999997631 2 5789999999999999999999999988876654
No 9
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.88 E-value=8e-22 Score=179.75 Aligned_cols=128 Identities=23% Similarity=0.383 Sum_probs=105.5
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHH
Q 036400 11 NPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALED 90 (198)
Q Consensus 11 ~~~~~k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieD 90 (198)
.++..++++++.|+ +|.+.++++++.++.+.+..++++++.+.. +|+.|||+|+|||||+|+|+.|||+|+||||
T Consensus 319 ~~~~~~e~L~~~f~-~w~~~v~elI~~t~~~~i~~~~iyd~~p~~----~W~~grVvLiGDAAH~~~P~~GqG~n~AieD 393 (668)
T PLN02927 319 APNGMKKRLFEIFD-GWCDNVLDLLHATEEDAILRRDIYDRSPGF----TWGKGRVTLLGDSIHAMQPNMGQGGCMAIED 393 (668)
T ss_pred cchhHHHHHHHHhc-cCCHHHHHHHHhCccccceeeeEEeccCCC----ccccCcEEEEcCccCCCCCccccchHHHHHH
Confidence 45678899999999 999999999999876667788888877653 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 036400 91 AVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQ 146 (198)
Q Consensus 91 a~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~ 146 (198)
|+.|+.+|..+..... ...... ++.++|+.||++|++|+..++..++....++
T Consensus 394 a~~La~~L~~~~~~~~-~~~~~~--~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~ 446 (668)
T PLN02927 394 SFQLALELDEAWKQSV-ETNTPV--DVVSSLKRYEESRRLRVAIIHAMARMAAIMA 446 (668)
T ss_pred HHHHHHHHHHhhcccc-ccCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987643210 001112 6889999999999999999999977655443
No 10
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.87 E-value=2.9e-22 Score=173.18 Aligned_cols=109 Identities=21% Similarity=0.163 Sum_probs=95.4
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|+.|||+|||||||+|+|++|||+|+||+||.+|+++|... .. ..+++|+.||++|++++..++..
T Consensus 274 ~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~----------~~--~~~~~L~~Ye~~R~~~~~~~~~~ 341 (384)
T PRK08849 274 QQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ----------GV--LNDASFARYERRRRPDNLLMQTG 341 (384)
T ss_pred chhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc----------CC--CcHHHHHHHHHHHhHHHHHHHHH
Confidence 5899999999999999999999999999999999999998641 12 46789999999999999999999
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccccccC
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDC 180 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 180 (198)
++.+.++++.. +++....|+..+......+.+|+.++++..
T Consensus 342 ~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 382 (384)
T PRK08849 342 MDLFYKTFSNS-LTPLKFVRNAALKLAENSGPLKTQVLKYAL 382 (384)
T ss_pred HHHHHHHhcCC-chHHHHHHHHHHHHHhccHHHHHHHHHHHc
Confidence 99999999998 788999999999988877777765555443
No 11
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.87 E-value=3.1e-22 Score=170.42 Aligned_cols=173 Identities=28% Similarity=0.366 Sum_probs=131.7
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHH
Q 036400 10 GNPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALE 89 (198)
Q Consensus 10 ~~~~~~k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~Aie 89 (198)
.+++.+++...+.+. .|+..++++++.++.+.+...++.+++|++.+..+-..++|||+|||||+|+|+.|||+|+|||
T Consensus 235 ~e~~~l~~~~~~v~~-~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~E 313 (420)
T KOG2614|consen 235 DEPEKLKKTSLEVVD-FFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFE 313 (420)
T ss_pred CCHHHHhhhHHHHHH-HhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHH
Confidence 467888888888898 9999999999999988888899999999875544556788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCC-----chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChH--HHHHHHHHH
Q 036400 90 DAVVLGRHIGNLLIKTKGHIATTG-----DNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWW--MRFLRDVIF 162 (198)
Q Consensus 90 Da~~La~~L~~~~~~~~~~~~~~~-----~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~--~~~~r~~~~ 162 (198)
|+++|+++|.++....+....+.. ..-++.++..|...|..|.-++...+...+.+..+. +++ ...+|+..+
T Consensus 314 D~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~~rl~~~~~l~gi~~~s~-~~l~~m~~F~d~~y 392 (420)
T KOG2614|consen 314 DCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRRLLRLKVDAYLVGILPQSF-GPLYLMVSFRDIIY 392 (420)
T ss_pred HHHHHHHHHHHhccchhccccceecccchhHHHHHHHHHHHHHHHHHHhhhhhhheeeEeccccc-cchhhccchhhhhH
Confidence 999999999987653111111111 112788999999999888877777777677777766 677 455666666
Q ss_pred HHhhhhhhccCccccccCCCCCCc
Q 036400 163 YRFLVGGVLGNKVTGYDCGKLPDV 186 (198)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~ 186 (198)
..++.....++ ..|.+|.....
T Consensus 393 s~~l~~~~~~~--~~~~~g~~~l~ 414 (420)
T KOG2614|consen 393 SEALERLGIKK--KILNDGSFFLF 414 (420)
T ss_pred HHHHHHHHhhh--hhhcccchhhh
Confidence 55554444455 55666665543
No 12
>PRK05868 hypothetical protein; Validated
Probab=99.87 E-value=4.7e-22 Score=171.48 Aligned_cols=131 Identities=16% Similarity=-0.020 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHhc-cCC-HHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHH
Q 036400 12 PELIQKEVLEKYAK-VLP-PFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALE 89 (198)
Q Consensus 12 ~~~~k~~l~~~~~~-~~~-~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~Aie 89 (198)
.+..++.+.+.|.. +|. +.+.+++...+ ++++..+. ..+ +++|++|||+|||||||+|+|+.|||+|+||+
T Consensus 235 ~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~--~~~~~~~~-~~~----~~~w~~grv~LvGDAAH~~~P~~GqGa~~Ale 307 (372)
T PRK05868 235 TEAQFAELQRRMAEDGWVRAQLLHYMRSAP--DFYFDEMS-QIL----MDRWSRGRVALVGDAGYCCSPLSGQGTSVALL 307 (372)
T ss_pred hHHHHHHHHHHHhhCCCchHHHHhhcccCC--ceeeccce-EEe----cCCCCCCCeeeeecccccCCCccCccHHHHHH
Confidence 45578889999874 465 33444433222 22222232 222 35899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHH
Q 036400 90 DAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIF 162 (198)
Q Consensus 90 Da~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~ 162 (198)
||++||++|... .. +++++|+.||+.++|++.+.+........++.+. +.+...+|+..+
T Consensus 308 Da~~La~~L~~~----------~~--~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~p~-~~~~~~~~~~~~ 367 (372)
T PRK05868 308 GAYILAGELKAA----------GD--DYQLGFANYHAEFHGFVERNQWLVSDNIPGGAPI-PQEEFERIVHSI 367 (372)
T ss_pred HHHHHHHHHHhc----------CC--CHHHHHHHHHHHHhHHHHHhhhhhhccCCcccCC-CHHHHHHhhccc
Confidence 999999999652 12 6899999999999999999999998889999988 888888876654
No 13
>PRK06996 hypothetical protein; Provisional
Probab=99.87 E-value=3.9e-22 Score=173.19 Aligned_cols=108 Identities=18% Similarity=0.175 Sum_probs=94.8
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|..|||+|||||||+|+|++|||+|+||+||.+|+++|... . ....+|+.|+++|++++..++..
T Consensus 286 ~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~-----------~--~~~~~L~~Y~~~R~~~~~~~~~~ 352 (398)
T PRK06996 286 RTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH-----------G--ATPLALATFAARRALDRRVTIGA 352 (398)
T ss_pred cceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc-----------C--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999651 1 35578999999999999999999
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccccccC
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDC 180 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 180 (198)
+..+.++++.+ +++...+|+..+..+.....+++.++++..
T Consensus 353 s~~l~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 393 (398)
T PRK06996 353 TDLLPRLFTVD-SRPLAHLRGAALTALEFVPPLKHALARQMM 393 (398)
T ss_pred HHHHHHHHcCC-chHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence 99999999998 889999999999987777777765555443
No 14
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.87 E-value=4.2e-22 Score=171.69 Aligned_cols=117 Identities=22% Similarity=0.189 Sum_probs=102.3
Q ss_pred cccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHH
Q 036400 43 LHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAID 122 (198)
Q Consensus 43 ~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~ 122 (198)
+..+|++.+. . ++|+.|||+|||||||+|+|++|||+|+||+||.+|+++|.. . .+|+
T Consensus 257 ~~~~~l~~~~-~----~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~---------------~--~~L~ 314 (374)
T PRK06617 257 ISSFPLKARI-A----NRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN---------------N--GTLQ 314 (374)
T ss_pred eeEEEeeeee-c----cceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC---------------c--chHH
Confidence 4556666542 2 479999999999999999999999999999999999999832 1 4799
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccccccCCC
Q 036400 123 GYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCGK 182 (198)
Q Consensus 123 ~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 182 (198)
.||+.|++++..++..+..+.++|++. +++...+|+..+..+...+.+|.+++.+..|+
T Consensus 315 ~Ye~~R~~~~~~~~~~t~~l~~~f~~~-~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 373 (374)
T PRK06617 315 EYQKLRQEDNFIMYKLTDELNNIFSNY-SKNLRCLRQIGFKVINNFKPIKNLITSYAMGK 373 (374)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 999999999999999999999999988 88999999999998888888888888777664
No 15
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.86 E-value=1.2e-21 Score=169.51 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=98.5
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|+.|||+|||||||+|+|++|||+|+||+||..|+++|...... ..+.....+|+.|+++|+++...+...
T Consensus 277 ~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~-------~~~~~~~~~l~~y~~~R~~~~~~~~~~ 349 (392)
T PRK08773 277 QQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHAR-------RADWAAPHRLQRWARTRRSDNTVAAYG 349 (392)
T ss_pred hhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhc-------CCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999876432 011123578999999999998888888
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccccccCC
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCG 181 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 181 (198)
+..+.+++..+ +++...+|++.+..+.....+|++++++..|
T Consensus 350 ~~~l~~~f~~~-~~~~~~~r~~~l~~~~~~~~~k~~~~~~~~g 391 (392)
T PRK08773 350 FDAINRVFSND-EMHLTLLRGSVLGLAGKLPPLVDALWKRASG 391 (392)
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHhhCHHHHHHHHHHHcC
Confidence 88899999999 8999999999999888888888877776655
No 16
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.85 E-value=3.1e-21 Score=167.78 Aligned_cols=115 Identities=21% Similarity=0.191 Sum_probs=97.5
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|+.|||+|||||||+|+|++|||+|+||+||..|+++|...... ..+.....+|+.|+++|++++..++..
T Consensus 277 ~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~-------~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 349 (405)
T PRK08850 277 RDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQ-------GRDIGLKRNLRGYERWRKAEAAKMIAA 349 (405)
T ss_pred cccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhc-------CCCcchHHHHHHHHHHHhHHHHHHHHH
Confidence 5899999999999999999999999999999999999999876532 111134689999999999999999999
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccccccCC
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCG 181 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 181 (198)
+..+.++++.+ ++....+|+.++..+...+.++.++..+..|
T Consensus 350 ~~~l~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g 391 (405)
T PRK08850 350 MQGFRDLFSGS-NPAKKLVRGIGMSLAGQLPGAKDEIMKRALG 391 (405)
T ss_pred HHHHHHHHCCC-chHHHHHHHHHHHHHhhCHHHHHHHHHHHhC
Confidence 99999999998 8899999999999877766666555544443
No 17
>PRK08013 oxidoreductase; Provisional
Probab=99.85 E-value=2.6e-21 Score=168.11 Aligned_cols=116 Identities=20% Similarity=0.145 Sum_probs=96.5
Q ss_pred ccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 036400 58 FGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 137 (198)
Q Consensus 58 ~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~ 137 (198)
.++|+.|||+|||||||.|+|++|||+|+||+||.+|+++|...... ..+.....+|+.|+++|++++..++.
T Consensus 276 ~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~-------~~~~~~~~~L~~Y~~~R~~~~~~~~~ 348 (400)
T PRK08013 276 ARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQ-------GKDIGQHLYLRRYERSRKHSAALMLA 348 (400)
T ss_pred cccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhc-------CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999875432 11001235799999999999999999
Q ss_pred HHHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccccccCC
Q 036400 138 GSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCG 181 (198)
Q Consensus 138 ~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 181 (198)
.+..+.++++++ +++...+|+++++.+...+.++.++..+..|
T Consensus 349 ~~~~~~~l~~~~-~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~g 391 (400)
T PRK08013 349 GMQGFRDLFAGN-NPAKKLLRDIGLKLADTLPGVKPQLIRQAMG 391 (400)
T ss_pred HHHHHHHHHcCC-chHHHHHHHHHHHHHhhCHHHHHHHHHHHcc
Confidence 999999999998 8999999999999776666666656555555
No 18
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.85 E-value=3.1e-21 Score=167.74 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=109.9
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHH
Q 036400 11 NPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALED 90 (198)
Q Consensus 11 ~~~~~k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieD 90 (198)
+.++.++.+.+.|. +|.+.+. ... ....+++.... .++|+.|||+|||||||+|+|+.|||+|+||+|
T Consensus 253 ~~~~~~~~l~~~~~-~~~~~~~----~~~--~~~~~~~~~~~-----~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~D 320 (415)
T PRK07364 253 PEAEFLAELQQRYG-DQLGKLE----LLG--DRFLFPVQLMQ-----SDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRD 320 (415)
T ss_pred CHHHHHHHHHHHhh-hhhcCce----ecC--CCceecchhhh-----hhhhcCCcEEEEecccccCCCcccccHhHHHHH
Confidence 34555666666665 4433221 111 23345554332 247999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHhhhhhh
Q 036400 91 AVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGV 170 (198)
Q Consensus 91 a~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 170 (198)
|..|+++|...... ..+.....+|+.|++.|++++..++..++...++++.+ +++...+|+.+++.+.....
T Consensus 321 A~~La~~L~~~~~~-------~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~ 392 (415)
T PRK07364 321 AAALAQVLQTAHQR-------GEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQ-WWPLVVVRRLGLWLLRHVPP 392 (415)
T ss_pred HHHHHHHHHHHHhc-------CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhCHH
Confidence 99999999875421 01001247999999999999999999999999999998 88999999999887665544
Q ss_pred ccCccccccCC
Q 036400 171 LGNKVTGYDCG 181 (198)
Q Consensus 171 ~~~~~~~~~~~ 181 (198)
++.++.....|
T Consensus 393 ~~~~~~~~~~g 403 (415)
T PRK07364 393 LKRLALRLMTG 403 (415)
T ss_pred HHHHHHHHHcC
Confidence 44444444444
No 19
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.85 E-value=3.1e-21 Score=166.66 Aligned_cols=115 Identities=20% Similarity=0.124 Sum_probs=98.9
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|..|||+|+|||||+|+|+.|||+|+||+||..|+++|...... ..+.....+|+.|++.|+++...++..
T Consensus 276 ~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~-------~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 348 (391)
T PRK08020 276 LQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSY-------GEAWASEAVLKRYQRRRMADNLLMQSG 348 (391)
T ss_pred hhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhc-------CCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999875321 011134689999999999999999999
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccccccCC
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCG 181 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 181 (198)
+..+.+++..+ .++.+.+|++.|..+.....+|..++.+..|
T Consensus 349 ~~~l~~~~~~~-~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g 390 (391)
T PRK08020 349 MDLFYAGFSNN-LPPLRFARNLGLMAAQRAGVLKRQALKYALG 390 (391)
T ss_pred HHHHHHHHcCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHcC
Confidence 99999999998 8899999999999888888888766666554
No 20
>PRK07538 hypothetical protein; Provisional
Probab=99.85 E-value=5.4e-21 Score=166.73 Aligned_cols=110 Identities=27% Similarity=0.401 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhccCCHH---HHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHH
Q 036400 14 LIQKEVLEKYAKVLPPF---YSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALED 90 (198)
Q Consensus 14 ~~k~~l~~~~~~~~~~~---~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieD 90 (198)
...+++.+.|. +|.+. +.++++.++ .++.+|++++.+.+ +|+.|||+|||||||+|+|++|||+|+||+|
T Consensus 251 ~~~~~~~~~~~-~~~~~~~~~~~~i~~~~--~~~~~p~~~~~~~~----~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~D 323 (413)
T PRK07538 251 GDLEDFLPHFA-DWRFDWLDVPALIRAAE--AIYEYPMVDRDPLP----RWTRGRVTLLGDAAHPMYPVGSNGASQAILD 323 (413)
T ss_pred cCHHHHHHHhc-CCCCCcccHHHHHhcCc--ceeeccccccCCCC----cccCCcEEEEeeccCcCCCCCcccHHHHHHH
Confidence 44567777887 77653 667777654 56678888776654 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036400 91 AVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSG 143 (198)
Q Consensus 91 a~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~ 143 (198)
|..|+++|... . +++++|+.||++|++++..++..++.++
T Consensus 324 a~~La~~L~~~-----------~--~~~~aL~~Ye~~R~~~~~~~~~~s~~~~ 363 (413)
T PRK07538 324 ARALADALAAH-----------G--DPEAALAAYEAERRPATAQIVLANRLNG 363 (413)
T ss_pred HHHHHHHHHhc-----------C--CHHHHHHHHHHHhhHHHHHHHHHhhhcC
Confidence 99999999862 2 5789999999999999999999998744
No 21
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.85 E-value=4.5e-21 Score=166.02 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=98.7
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|+.|||+|||||||.|+|+.|||+|+||+||..|+++|...... ..+....++|+.||++|++++..++..
T Consensus 275 ~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~-------~~~~~~~~~L~~Ye~~R~~~~~~~~~~ 347 (403)
T PRK07333 275 RSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARL-------GLDIGSLDVLERYQRWRRFDTVRMGVT 347 (403)
T ss_pred hhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHHhHHHHHHHHH
Confidence 5799999999999999999999999999999999999999876531 001135789999999999999999999
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccccccCC
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCG 181 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 181 (198)
++.+.++++.+ +++...+|+.++..+...+.+++++..+..|
T Consensus 348 ~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g 389 (403)
T PRK07333 348 TDVLNRLFSND-STLLRSVRDIGLGLVDRLPKLKSFFIRQAAG 389 (403)
T ss_pred HHHHHHHHcCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHhC
Confidence 99999999998 8899999999998776666667666666666
No 22
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.84 E-value=6.7e-21 Score=164.44 Aligned_cols=124 Identities=18% Similarity=0.094 Sum_probs=104.5
Q ss_pred cccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHH
Q 036400 43 LHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAID 122 (198)
Q Consensus 43 ~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~ 122 (198)
...||+....+ ++|..|||+|||||||.|+|++|||+|+||+||..|+++|..... +....++|+
T Consensus 264 ~~~~~l~~~~~-----~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~----------~~~~~~~L~ 328 (388)
T PRK07494 264 RQAWPLSGQVA-----HRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPE----------DPGSAAVLA 328 (388)
T ss_pred CcEeechHHHH-----HhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCC----------CcchHHHHH
Confidence 34466654332 479999999999999999999999999999999999999976321 114578999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccccccCCC
Q 036400 123 GYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDCGK 182 (198)
Q Consensus 123 ~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 182 (198)
.|+++|+++...++..+..+.+.+... .++...+|+..|..+...+.++.++.++..|+
T Consensus 329 ~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~ 387 (388)
T PRK07494 329 AYDRARRPDILSRTASVDLLNRSLLSD-FLPVQDLRAAGLHLLYSFGPLRRLFMREGLGP 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHhhCHHHHHHHHHHhcCC
Confidence 999999999999999999999999988 89999999999998888788887777777664
No 23
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.83 E-value=1.3e-20 Score=169.55 Aligned_cols=104 Identities=25% Similarity=0.245 Sum_probs=91.0
Q ss_pred ccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 036400 58 FGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 137 (198)
Q Consensus 58 ~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~ 137 (198)
.++|..|||+|+|||||.|+|++|||+|+||+||.+|++.|.....+ . ....+|..|+++|++++..+++
T Consensus 280 a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g--------~--~~~~~L~~Ye~eR~p~~~~~~~ 349 (538)
T PRK06183 280 ADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRG--------R--AGDALLDTYEQERRPHARAMID 349 (538)
T ss_pred hhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcC--------C--CcHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999876532 2 4578999999999999999999
Q ss_pred HHHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhcc
Q 036400 138 GSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLG 172 (198)
Q Consensus 138 ~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 172 (198)
.+..++++++.. ++....+|+.+++.+......+
T Consensus 350 ~s~~~~~~~~~~-~~~~~~~R~~~l~~~~~~~~~~ 383 (538)
T PRK06183 350 LAVRLGRVICPT-DRLAAALRDAVLRALNYLPPLK 383 (538)
T ss_pred HHHHhhhhccCC-CHHHHHHHHHHHHhhhcCcchh
Confidence 999999999998 8999999999887654433333
No 24
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.83 E-value=4e-20 Score=160.34 Aligned_cols=112 Identities=17% Similarity=0.101 Sum_probs=87.6
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|+.|||+|||||||+|+|+.|||+|+||+||.+|+++|..... . +...+|+.|++.|++|+..+++.
T Consensus 274 ~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~---------~--~~~~al~~Y~~~R~~r~~~~~~~ 342 (390)
T TIGR02360 274 EPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ---------E--GSSAGIEGYSARALARVWKAERF 342 (390)
T ss_pred ccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc---------c--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999976432 1 57889999999999999999999
Q ss_pred HHHhhhhhcCC-C-ChHHHHHHHHHHHHhhhhhhccCccccccCC
Q 036400 139 SYLSGWVQDGG-S-NWWMRFLRDVIFYRFLVGGVLGNKVTGYDCG 181 (198)
Q Consensus 139 s~~~~~~~~~~-~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 181 (198)
|+.++++++.. - ......++..-|..+..+....+|+..+-.|
T Consensus 343 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
T TIGR02360 343 SWWMTSLLHRFPDTDAFDQRIQQAELEYLLGSEAAQATLAENYVG 387 (390)
T ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhccC
Confidence 99998887643 0 2334455556666566655555444444444
No 25
>PRK09126 hypothetical protein; Provisional
Probab=99.83 E-value=1.9e-20 Score=161.73 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=93.1
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|..|||+|+|||||+|+|+.|||+|+||+||..|+++|...... ..+...+++|+.|+++|++++..++..
T Consensus 275 ~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~-------~~~~~~~~~l~~Y~~~r~~~~~~~~~~ 347 (392)
T PRK09126 275 HRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARR-------GQDIGAASLLERYERKHRLATRPLYHA 347 (392)
T ss_pred HHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhc-------CCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999876532 011134789999999999999999999
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccc
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVT 176 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 176 (198)
+..+.+++..+ +++.+.+|+++++.+...+.++.++.
T Consensus 348 ~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~ 384 (392)
T PRK09126 348 TNAIAALYTDD-RPPARLLRRAVLRAANRFPPLKQAIA 384 (392)
T ss_pred HHHHHHHHCCC-chHHHHHHHHHHHHHhhChHHHHHHH
Confidence 99999999988 88899999999987665555444333
No 26
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.83 E-value=3.8e-20 Score=158.87 Aligned_cols=141 Identities=17% Similarity=0.169 Sum_probs=104.6
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHH
Q 036400 11 NPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALED 90 (198)
Q Consensus 11 ~~~~~k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieD 90 (198)
+++++++++.+.+. ++.+.+ .. ...+..+++.... .++|+.|||+|||||||+|+|+.|||+|+||+|
T Consensus 235 ~~~~~~~~~~~~~~-~~~~~~----~~--~~~~~~~~~~~~~-----~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~d 302 (385)
T TIGR01988 235 SDEEFLAELQRAFG-SRLGAI----TL--VGERHAFPLSLTH-----AKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRD 302 (385)
T ss_pred CHHHHHHHHHHHHh-hhcCce----Ee--ccCcceeechhhh-----hhheecCceEEEecccccCCccccchhhhhHHH
Confidence 44556666665555 332211 11 1233445554432 247999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHhhhhhh
Q 036400 91 AVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGV 170 (198)
Q Consensus 91 a~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 170 (198)
|..|++.|...... ..+...+.+|+.|++.|++++..++..++...+++..+ ++....+|+.+++.+...+.
T Consensus 303 a~~La~~L~~~~~~-------~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~ 374 (385)
T TIGR01988 303 VAALAEVLEDARRR-------GEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSND-FPPLRLLRNLGLRLLNLLPP 374 (385)
T ss_pred HHHHHHHHHHHHhc-------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhhCHH
Confidence 99999999876431 11012478999999999999999999999999999988 88899999999886654333
Q ss_pred c
Q 036400 171 L 171 (198)
Q Consensus 171 ~ 171 (198)
+
T Consensus 375 ~ 375 (385)
T TIGR01988 375 L 375 (385)
T ss_pred H
Confidence 3
No 27
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.83 E-value=8.1e-20 Score=160.60 Aligned_cols=107 Identities=20% Similarity=0.088 Sum_probs=93.1
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|..|||+|+|||||.|+|++|||+|+||+||.+|+++|...... ..+..-..+|+.|+++|+++++.++..
T Consensus 328 ~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~-------~~~~~~~~~L~~Y~~~R~~~~~~v~~~ 400 (437)
T TIGR01989 328 DEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSV-------GADIGSISSLKPYERERYAKNVVLLGL 400 (437)
T ss_pred hhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhc-------CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999876532 110012468999999999999999999
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccC
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGN 173 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 173 (198)
+..+.+++..+ +++...+|++++..+.....+|.
T Consensus 401 t~~l~~l~~~~-~~~~~~~R~~~l~~~~~~~~~k~ 434 (437)
T TIGR01989 401 VDKLHKLYATD-FPPVVALRTFGLNLTNYIGPLKN 434 (437)
T ss_pred HHHHHHHHcCC-ccHHHHHHHHHHHHhhhCHHhHH
Confidence 99999999998 89999999999998777666665
No 28
>PRK06185 hypothetical protein; Provisional
Probab=99.83 E-value=3.4e-20 Score=160.94 Aligned_cols=152 Identities=14% Similarity=0.053 Sum_probs=115.1
Q ss_pred HHHHHHHhccCCHHHHHHHHhCC-CCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHH
Q 036400 17 KEVLEKYAKVLPPFYSVIVRRSD-ASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLG 95 (198)
Q Consensus 17 ~~l~~~~~~~~~~~~~~li~~~~-~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La 95 (198)
+.+.+.+. .+.|.+...+.... ......+++.... +++|..+||+|||||||.++|++|||+|+||+||..|+
T Consensus 242 ~~~~~~~~-~~~p~~~~~l~~~~~~~~~~~~~l~~~~-----~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La 315 (407)
T PRK06185 242 EAFRERVA-ELAPELADRVAELKSWDDVKLLDVRVDR-----LRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAA 315 (407)
T ss_pred HHHHHHHH-HhCccHHHHHhhcCCccccEEEEEeccc-----cccccCCCeEEEeccccccCcccccchhHHHHHHHHHH
Confidence 44555555 55555555555432 2233444553222 24799999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC--hHHHHHHHHHHHHhhhhhhccC
Q 036400 96 RHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSN--WWMRFLRDVIFYRFLVGGVLGN 173 (198)
Q Consensus 96 ~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~ 173 (198)
+.|...... .+ ....+|+.|++.|+++...++..+..+.+++.++ + ++...+|+..|..+...+.+++
T Consensus 316 ~~l~~~~~~-------~~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~R~~~l~~~~~~~~~k~ 385 (407)
T PRK06185 316 NILAEPLRR-------GR--VSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAP-ALAGRGPLGPPLLLRLLNRLPWLRR 385 (407)
T ss_pred HHHHHHhcc-------CC--ccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccc-cccCccccCCchHHHHHHhChhHHH
Confidence 999876542 11 2348999999999999999999999999999988 7 8899999999998887777777
Q ss_pred ccccc-cCCCCC
Q 036400 174 KVTGY-DCGKLP 184 (198)
Q Consensus 174 ~~~~~-~~~~~~ 184 (198)
+++++ .+|.-+
T Consensus 386 ~~~~~~~~~~~~ 397 (407)
T PRK06185 386 LPARLVGLGVRP 397 (407)
T ss_pred hhHHheEecCCC
Confidence 55554 344443
No 29
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.82 E-value=4.7e-20 Score=159.79 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=89.4
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|+.|||+|||||||+|+|++|||+|+||+||..|+++|...... +.+++|+.|+++|++|+..+++.
T Consensus 274 ~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~-----------~~~~~L~~Ye~~r~~r~~~~~~~ 342 (392)
T PRK08243 274 EPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE-----------GDTALLDAYSATALRRVWKAERF 342 (392)
T ss_pred ccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999875432 35789999999999999999999
Q ss_pred HHHhhhhhcCC--CChHHHHHHHHHHHHhhhhhhccC
Q 036400 139 SYLSGWVQDGG--SNWWMRFLRDVIFYRFLVGGVLGN 173 (198)
Q Consensus 139 s~~~~~~~~~~--~~~~~~~~r~~~~~~~~~~~~~~~ 173 (198)
|..+.++++.. ...+...+|+..|+.+...+....
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (392)
T PRK08243 343 SWWMTSMLHRFPDDDPFDQRIQLAELDYLTSSRAAAT 379 (392)
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCHHHHH
Confidence 99999887762 045777889999988777666554
No 30
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.82 E-value=3.8e-20 Score=166.83 Aligned_cols=97 Identities=23% Similarity=0.266 Sum_probs=86.4
Q ss_pred ccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 036400 58 FGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 137 (198)
Q Consensus 58 ~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~ 137 (198)
.++|+.|||+|+|||||.|+|++|||+|+||+||.+|++.|+....+ . ....+|+.||++|+++++.+++
T Consensus 293 a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g--------~--~~~~lL~~Ye~eR~p~~~~~~~ 362 (547)
T PRK08132 293 MDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRG--------R--APDSLLDSYASEREFAADENIR 362 (547)
T ss_pred ecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcC--------C--CcHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999887643 2 4678999999999999999999
Q ss_pred HHHHhhhhhcCCCChHHHHHHHHHHHHh
Q 036400 138 GSYLSGWVQDGGSNWWMRFLRDVIFYRF 165 (198)
Q Consensus 138 ~s~~~~~~~~~~~~~~~~~~r~~~~~~~ 165 (198)
.+..+..+++.. ++....+|+.++...
T Consensus 363 ~s~~~~~~~~~~-~~~~~~~r~~~~~~~ 389 (547)
T PRK08132 363 NSTRSTDFITPK-SPVSRLFRDAVLRLA 389 (547)
T ss_pred HHHHHHhhhCCC-CHHHHHHHHHHHhhh
Confidence 999999988887 788888898877644
No 31
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.82 E-value=7.9e-20 Score=157.25 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=89.6
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|..|||+|||||||+|+|+.|||+|+||+||..|+++|...... . ..+++|+.|+++|+++...++..
T Consensus 271 ~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~--------~--~~~~~l~~Y~~~r~~~~~~~~~~ 340 (382)
T TIGR01984 271 ETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARID--------L--GTYALLQEYLRRRQFDQFITIGL 340 (382)
T ss_pred hheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccC--------c--cCHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999865311 1 35789999999999999999999
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhcc
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLG 172 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 172 (198)
+....+++..+ +++.+.+|+.+++.+...+.++
T Consensus 341 ~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~p~~~ 373 (382)
T TIGR01984 341 TDGLNRLFSNH-IPLLRALRNLGLLALENFPPLK 373 (382)
T ss_pred HHHHHHHHcCC-chHHHHHHHHHHHHHhcCHHHH
Confidence 99999999988 8888999999988765444433
No 32
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.82 E-value=8.7e-20 Score=157.29 Aligned_cols=110 Identities=17% Similarity=0.107 Sum_probs=92.4
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|+.|||+|||||||+|+|+.|||+|+||+||..|+++|....... .. ...++|+.|+++|+++++.++..
T Consensus 275 ~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~------~~--~~~~~l~~Ye~~R~~~~~~~~~~ 346 (388)
T PRK07608 275 DRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFR------DL--GDLRLLRRYERARREDILALQVA 346 (388)
T ss_pred hhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccC------CC--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999997653210 01 23479999999999999999999
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCcccc
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTG 177 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 177 (198)
+....+++..+ +++...+|+.+++.+...+.+++++..
T Consensus 347 ~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~ 384 (388)
T PRK07608 347 TDGLQRLFALP-GPLARWLRNAGMALVGALPLVKRWLVR 384 (388)
T ss_pred HHHHHHHHcCC-chHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 99999999998 889999999999877655555553433
No 33
>PRK07045 putative monooxygenase; Reviewed
Probab=99.82 E-value=1.4e-19 Score=156.36 Aligned_cols=130 Identities=20% Similarity=0.165 Sum_probs=96.9
Q ss_pred HHHHHHHhccCC-HHHHHHHHhCCCC-CcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHH
Q 036400 17 KEVLEKYAKVLP-PFYSVIVRRSDAS-TLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVL 94 (198)
Q Consensus 17 ~~l~~~~~~~~~-~~~~~li~~~~~~-~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~L 94 (198)
+.+.+.+. .|. +.+.++++..+.. .+..+++... ..++|+.|||+|||||||+|+|++|||+|+||+||..|
T Consensus 242 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~L 315 (388)
T PRK07045 242 TKLLARLN-EFVGDESADAMAAIGAGTAFPLIPLGRM-----NLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGEL 315 (388)
T ss_pred HHHHHHHh-hhcCccchHHHhccCcccccceeecCcc-----ccccccCCCEEEEEccccccCCCccccHHHHHHHHHHH
Confidence 44555555 442 4445555544321 1222333221 23479999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHH
Q 036400 95 GRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIF 162 (198)
Q Consensus 95 a~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~ 162 (198)
+++|.....+ ..+++++|+.|+++|++++..++..++.+.+.++.. .+....+|.+..
T Consensus 316 a~~L~~~~~~---------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 373 (388)
T PRK07045 316 GACLDLHLSG---------QIALADALERFERIRRPVNEAVISYGHALATTYHDR-AALVANFRSQLQ 373 (388)
T ss_pred HHHHHhhcCC---------chhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccc-hhHHHHHHhhhh
Confidence 9999875432 125789999999999999999999999999999988 777777776554
No 34
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.82 E-value=6.1e-20 Score=159.00 Aligned_cols=96 Identities=29% Similarity=0.376 Sum_probs=87.6
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
.+|..|||+|||||||+|+|++|||+|+||+||.+|++.|...... .. + ..+|+.|+++|++++..++..
T Consensus 273 ~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~-------~~--~-~~~L~~Y~~~R~~~~~~~~~~ 342 (387)
T COG0654 273 ERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRP-------GA--D-AAALAAYEARRRPRAEAIQKL 342 (387)
T ss_pred hheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhc-------Cc--c-HHHHHHHHHhhhhHHHHHHHH
Confidence 4788899999999999999999999999999999999999987652 11 3 789999999999999999999
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHh
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRF 165 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~ 165 (198)
|..+.+.+... +++.+.+|+..++.+
T Consensus 343 s~~~~~~~~~~-~~~~~~~r~~~l~~~ 368 (387)
T COG0654 343 SRALGRLFSAD-GPFARFLRNLGLRLL 368 (387)
T ss_pred HHHHhhhhccC-CcHHHHHHHHHHHhh
Confidence 99999999999 999999999998865
No 35
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.81 E-value=1.6e-19 Score=155.90 Aligned_cols=114 Identities=12% Similarity=0.028 Sum_probs=95.0
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|..|||+|+|||||+|+|+.|||+|+||+||..|+++|....... .+....++|+.|+++|+++...++..
T Consensus 277 ~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~-------~~~~~~~~l~~Y~~~R~~~~~~~~~~ 349 (395)
T PRK05732 277 AQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARG-------EDIGDYAVLQRYQQRRQQDREATIGF 349 (395)
T ss_pred hhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcC-------CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998754321 11123588999999999999999999
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccccccC
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGYDC 180 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 180 (198)
+....+++.++ ..+...+|+.++..+...+.++.|+..+..
T Consensus 350 ~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 390 (395)
T PRK05732 350 TDGLVRLFANR-WAPLVVGRNLGLMAMDLLPPARDWLARRTL 390 (395)
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999988 788899999999877765666665544433
No 36
>PRK06834 hypothetical protein; Provisional
Probab=99.79 E-value=7.4e-19 Score=156.64 Aligned_cols=97 Identities=24% Similarity=0.252 Sum_probs=85.0
Q ss_pred ccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 036400 58 FGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 137 (198)
Q Consensus 58 ~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~ 137 (198)
.++|..|||+|+|||||.|+|++|||+|+||+||.+|++.|+....+ . ....+|..|+++|++++..++.
T Consensus 259 a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g--------~--~~~~lLd~Ye~eRrp~~~~~~~ 328 (488)
T PRK06834 259 AASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKG--------T--SPESLLDTYHAERHPVAARVLR 328 (488)
T ss_pred cccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcC--------C--CcHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999887653 2 4678999999999999999999
Q ss_pred HHHHhhhhhcCCCChHHHHHHHHHHHHhh
Q 036400 138 GSYLSGWVQDGGSNWWMRFLRDVIFYRFL 166 (198)
Q Consensus 138 ~s~~~~~~~~~~~~~~~~~~r~~~~~~~~ 166 (198)
.+.....++. + ++....+|+.++..+.
T Consensus 329 ~t~~~~~~~~-~-~~~~~~lR~~~~~~~~ 355 (488)
T PRK06834 329 NTMAQVALLR-P-DDRTEALRDIVAELLG 355 (488)
T ss_pred HHHHHHHhhc-C-ChHHHHHHHHHHHHhc
Confidence 9988877776 5 6778899998886543
No 37
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.78 E-value=1.3e-18 Score=162.26 Aligned_cols=135 Identities=19% Similarity=0.078 Sum_probs=100.6
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCC----EEEecCCCCcCCCCchhhHhh
Q 036400 11 NPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGN----VTVAGDAMHPMTPDLGQGGCQ 86 (198)
Q Consensus 11 ~~~~~k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~gr----VvLiGDAAH~m~P~~GqGan~ 86 (198)
++++.++.+.+.|. +|.+.. .++..........|.++...+ .++|+.|| |+|||||||+|+|+.|||+|+
T Consensus 218 ~~~~~~~~l~~~f~-~~~~~~-~li~~~~~~~~~~w~~~~~~~----~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~ 291 (765)
T PRK08255 218 SQEESIAFCEKLFA-DYLDGH-PLMSNASHLRGSAWINFPRVV----CERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKL 291 (765)
T ss_pred CHHHHHHHHHHHhH-HhcCCC-cccccccccccceeeecceec----cCCCccCCCcccEEEEEcCcccCCCCcchhHHH
Confidence 56678899999999 887643 344443321122244433332 24899999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CChHHHHHHHHHH
Q 036400 87 ALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGG----SNWWMRFLRDVIF 162 (198)
Q Consensus 87 AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~----~~~~~~~~r~~~~ 162 (198)
|||||.+|+++|.... . +++.+|+.|++.|++|++.+++.|+..+.++.+. ...+.+..+++..
T Consensus 292 aieDa~~La~~L~~~~----------~--~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (765)
T PRK08255 292 ALEDAIELARCLHEHP----------G--DLPAALAAYEEERRVEVLRIQNAARNSTEWFENVERYAGLEPEQFAYSLLT 359 (765)
T ss_pred HHHHHHHHHHHHHHcc----------c--cHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeecchhhCCCHHHHHHHHHH
Confidence 9999999999997631 2 5889999999999999999999999888777654 0223445555554
Q ss_pred H
Q 036400 163 Y 163 (198)
Q Consensus 163 ~ 163 (198)
+
T Consensus 360 r 360 (765)
T PRK08255 360 R 360 (765)
T ss_pred h
Confidence 4
No 38
>PLN02985 squalene monooxygenase
Probab=99.77 E-value=8.5e-18 Score=150.63 Aligned_cols=142 Identities=19% Similarity=0.132 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHh-CCCC-CcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHH
Q 036400 13 ELIQKEVLEKYAKVLPPFYSVIVRR-SDAS-TLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALED 90 (198)
Q Consensus 13 ~~~k~~l~~~~~~~~~~~~~~li~~-~~~~-~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieD 90 (198)
.++++.+.+.+...+++.+++.+.. .+.. .+...+....+. ..|..+||+|||||||+|+|+.|||+|+||||
T Consensus 278 ~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~-----~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleD 352 (514)
T PLN02985 278 GEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSA-----TLSDKKGVIVLGDAFNMRHPAIASGMMVLLSD 352 (514)
T ss_pred hhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccccc-----cccCCCCEEEEecccccCCCCccccHhHHHHH
Confidence 4555555554432455666665542 2211 233344433221 25678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-CCCChHHHHHHHHHHHHhhh
Q 036400 91 AVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQD-GGSNWWMRFLRDVIFYRFLV 167 (198)
Q Consensus 91 a~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~-~~~~~~~~~~r~~~~~~~~~ 167 (198)
|.+|+++|.....- .+..++.++|+.|+..|++|+..++..|..+.++|. .+ ..-...+|+.-++.+..
T Consensus 353 A~vLa~lL~~~~~~-------~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~-~~~~~~l~~~~f~y~~~ 422 (514)
T PLN02985 353 ILILRRLLQPLSNL-------GNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVAST-DEAKEAMRQGCYDYLCS 422 (514)
T ss_pred HHHHHHHhhhcccc-------cchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHc
Confidence 99999999763210 011267899999999999999999999999999996 34 45567788877765444
No 39
>PTZ00367 squalene epoxidase; Provisional
Probab=99.74 E-value=3.3e-17 Score=148.12 Aligned_cols=141 Identities=20% Similarity=0.157 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHH-HhCC-CCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHHHH
Q 036400 14 LIQKEVLEKYAKVLPPFYSVIV-RRSD-ASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDA 91 (198)
Q Consensus 14 ~~k~~l~~~~~~~~~~~~~~li-~~~~-~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa 91 (198)
+..+.+.+.+...+++.+++.+ +... ...+..++....++. +|+.+||+|||||||+|+|++|||+|+||+||
T Consensus 290 ~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~-----~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA 364 (567)
T PTZ00367 290 EQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPA-----FPSIKGYVGIGDHANQRHPLTGGGMTCCFSDC 364 (567)
T ss_pred HHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCc-----cCCCCCEEEEEcccCCCCCcccccHHHHHHHH
Confidence 4556666655534566666544 3332 124555566555542 57889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCchhHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHhhh
Q 036400 92 VVLGRHIGNLLIKTKGHIATTGDNNVAQAID----GYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLV 167 (198)
Q Consensus 92 ~~La~~L~~~~~~~~~~~~~~~~~~~~~al~----~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 167 (198)
..|+++|.......+.. . .+..++.++|+ .|+..|++++..++..|..+.++|+. ..+|+..++.+..
T Consensus 365 ~~La~~L~~~~~~~~~d-~-~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~------~~lr~~~~~y~~~ 436 (567)
T PTZ00367 365 IRLAKSLTGIKSLRSID-Q-NEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS------PALRDACLDYFSL 436 (567)
T ss_pred HHHHHHHHhhhcccCCC-c-hhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh------HHHHHHHHHHHhc
Confidence 99999997543100000 0 00114566677 99999999999999999999999875 3477777765443
No 40
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.74 E-value=3.3e-18 Score=144.15 Aligned_cols=71 Identities=34% Similarity=0.401 Sum_probs=62.4
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|+.|||+|||||||+|+|+.|||+|+||+||..|+++|.....+ . ...++|+.|+++|++|++.+++.
T Consensus 286 ~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g--------~--~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 286 DRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKG--------E--ASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp SSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT--------S--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcC--------C--cHHHHHHHHHHHHHHHHHHHHhC
Confidence 4799999999999999999999999999999999999999987642 2 56789999999999999999876
Q ss_pred H
Q 036400 139 S 139 (198)
Q Consensus 139 s 139 (198)
+
T Consensus 356 ~ 356 (356)
T PF01494_consen 356 D 356 (356)
T ss_dssp H
T ss_pred C
Confidence 4
No 41
>PRK08244 hypothetical protein; Provisional
Probab=99.73 E-value=1.7e-17 Score=147.94 Aligned_cols=94 Identities=26% Similarity=0.193 Sum_probs=79.6
Q ss_pred ccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 036400 58 FGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 137 (198)
Q Consensus 58 ~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~ 137 (198)
.++|..|||+|+|||||.++|++|||+|+||+||.+|++.|.....+ . ....+|+.|+++|+++++.++.
T Consensus 266 a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g--------~--~~~~lL~~Ye~eR~~~~~~~~~ 335 (493)
T PRK08244 266 AERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKG--------W--APDWLLDSYHAERHPVGTALLR 335 (493)
T ss_pred HhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcC--------C--CCchhhhhhHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999887642 2 3457899999999999999999
Q ss_pred HHHHhhhhhcCCCChHHHHHHHHHHH
Q 036400 138 GSYLSGWVQDGGSNWWMRFLRDVIFY 163 (198)
Q Consensus 138 ~s~~~~~~~~~~~~~~~~~~r~~~~~ 163 (198)
.+.....++.. ++....+|+.+..
T Consensus 336 ~~~~~~~~~~~--~~~~~~~R~~~~~ 359 (493)
T PRK08244 336 NTEVQTKLFDF--TRPGLALRSMLSD 359 (493)
T ss_pred HhHHHHHHhcC--CchhHHHHHHHHH
Confidence 99888888754 3556667776543
No 42
>PRK06126 hypothetical protein; Provisional
Probab=99.73 E-value=9.2e-18 Score=151.25 Aligned_cols=80 Identities=25% Similarity=0.219 Sum_probs=70.8
Q ss_pred ccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 036400 58 FGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 137 (198)
Q Consensus 58 ~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~ 137 (198)
.++|+.|||+|+|||||.|+|++|||+|+||+||.+|+++|.....+ . ..+.+|+.|+++|++++..+++
T Consensus 297 a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~--------~--~~~~lL~~Y~~eR~p~~~~~~~ 366 (545)
T PRK06126 297 ADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNG--------W--AGPALLDSYEAERRPIAARNTD 366 (545)
T ss_pred hhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcC--------C--CcHHHHhhhHHHhhHHHHHHHH
Confidence 45899999999999999999999999999999999999999876532 2 4578999999999999999999
Q ss_pred HHHHhhhhhc
Q 036400 138 GSYLSGWVQD 147 (198)
Q Consensus 138 ~s~~~~~~~~ 147 (198)
.+..+...+.
T Consensus 367 ~s~~~~~~~~ 376 (545)
T PRK06126 367 YARRNADALG 376 (545)
T ss_pred HHHHHHHHhc
Confidence 9988776554
No 43
>PRK06184 hypothetical protein; Provisional
Probab=99.71 E-value=1.4e-17 Score=148.80 Aligned_cols=79 Identities=27% Similarity=0.240 Sum_probs=70.3
Q ss_pred ccCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 036400 58 FGNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 137 (198)
Q Consensus 58 ~~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~ 137 (198)
.++|..|||+|+|||||+|+|++|||+|+||+||.+|++.|+....+ ..+.+|+.|+++|+++++.+++
T Consensus 275 a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-----------~~~~lL~~Ye~eR~p~~~~~~~ 343 (502)
T PRK06184 275 ADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG-----------APEALLDTYEEERRPVAAAVLG 343 (502)
T ss_pred hhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999876532 3567899999999999999999
Q ss_pred HHHHhhhhhc
Q 036400 138 GSYLSGWVQD 147 (198)
Q Consensus 138 ~s~~~~~~~~ 147 (198)
.+....+.+.
T Consensus 344 ~s~~~~~~~~ 353 (502)
T PRK06184 344 LSTELLDAIK 353 (502)
T ss_pred HHHHHHHHHh
Confidence 9988776654
No 44
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.70 E-value=3.1e-17 Score=150.30 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=71.2
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYL 141 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~ 141 (198)
..|||+|+|||||+++|++|||+|++|+||++|++.|+....+ . ..+++|+.|+++|+++++.+++.++.
T Consensus 338 r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g--------~--a~~~lL~tYe~ERrp~a~~li~~~~~ 407 (634)
T PRK08294 338 RLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSG--------R--SPPELLHTYSAERQAIAQELIDFDRE 407 (634)
T ss_pred ccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcC--------C--CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999987653 2 56789999999999999999999999
Q ss_pred hhhhhcCC
Q 036400 142 SGWVQDGG 149 (198)
Q Consensus 142 ~~~~~~~~ 149 (198)
..+++...
T Consensus 408 ~~~l~~~~ 415 (634)
T PRK08294 408 WSTMMAAP 415 (634)
T ss_pred HHHHhccC
Confidence 99988765
No 45
>PRK07190 hypothetical protein; Provisional
Probab=99.69 E-value=6.1e-17 Score=144.33 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=70.2
Q ss_pred ccCcc-CCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 036400 58 FGNLS-KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLV 136 (198)
Q Consensus 58 ~~~w~-~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~ 136 (198)
.++|. .|||+|+|||||.++|.+|||+|++|+||++|++.|+....+ . .....|..|+.+|++..+.++
T Consensus 268 a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g--------~--a~~~lLdtY~~eR~p~a~~vl 337 (487)
T PRK07190 268 AEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHH--------G--ASPELLQSYEAERKPVAQGVI 337 (487)
T ss_pred hhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcC--------C--CcHHHHHHHHHHHHHHHHHHH
Confidence 45775 799999999999999999999999999999999999876653 2 457889999999999999999
Q ss_pred HHHHHhhhhhc
Q 036400 137 IGSYLSGWVQD 147 (198)
Q Consensus 137 ~~s~~~~~~~~ 147 (198)
..++...+...
T Consensus 338 ~~t~~~~~~~~ 348 (487)
T PRK07190 338 ETSGELVRSTK 348 (487)
T ss_pred HHHHHHHhhcc
Confidence 99987766553
No 46
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.38 E-value=1.8e-11 Score=100.84 Aligned_cols=145 Identities=20% Similarity=0.154 Sum_probs=110.5
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHH-HhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHH
Q 036400 11 NPELIQKEVLEKYAKVLPPFYSVIV-RRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALE 89 (198)
Q Consensus 11 ~~~~~k~~l~~~~~~~~~~~~~~li-~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~Aie 89 (198)
+..++++.+.+.+....++.++.-+ +..+.+.+...|....++. .....+++++|||++.-+|.+|+|++.|+.
T Consensus 81 ~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~-----~~~~~G~vllGDA~nmrHPLTGgGMTVAl~ 155 (276)
T PF08491_consen 81 SNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPAS-----PNWKPGVVLLGDAANMRHPLTGGGMTVALN 155 (276)
T ss_pred cchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCC-----CCCCCCEEEEehhhcCcCCccccchhhHHH
Confidence 4558888888877745666776644 3444445655666555553 234578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHhhhh
Q 036400 90 DAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDVIFYRFLVG 168 (198)
Q Consensus 90 Da~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 168 (198)
|+..|+++|.....= .+...+.++++.|..+|++....+.-.+...-.+|..+ +.....+|+.-++.+..+
T Consensus 156 Dv~lL~~lL~~~~dl-------~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~-~~~l~~Lr~gcf~Yf~~G 226 (276)
T PF08491_consen 156 DVVLLRDLLSPIPDL-------SDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAAD-DDYLKALRQGCFKYFQLG 226 (276)
T ss_pred HHHHHHHHHhhhcCc-------ccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence 999999999876110 11226789999999999999987777888888899888 778888999888855443
No 47
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.15 E-value=2e-12 Score=110.62 Aligned_cols=112 Identities=17% Similarity=0.091 Sum_probs=88.3
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
+.+...|+.|+|||||-++|.+|||.|+++.|+..|...|..+... +.+.....-|+.|+.+|.+.-..+.-.
T Consensus 365 ~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~-------g~DlgS~~~L~~y~~~~~~~N~~ll~~ 437 (481)
T KOG3855|consen 365 DEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVS-------GLDLGSVEHLEPYERERLQHNYVLLGA 437 (481)
T ss_pred HHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHh-------cccccchhhhhHHHHHHhhhcchHHHH
Confidence 4678999999999999999999999999999999999999987654 222223466999999999988888888
Q ss_pred HHHhhhhhcCCCChHHHHHHHHHHHHhhhhhhccCccccc
Q 036400 139 SYLSGWVQDGGSNWWMRFLRDVIFYRFLVGGVLGNKVTGY 178 (198)
Q Consensus 139 s~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 178 (198)
.....++|... .++...+|.+.|.........|.+++.+
T Consensus 438 vdkl~klY~t~-~p~vV~~rt~GL~~~n~l~PvKN~im~~ 476 (481)
T KOG3855|consen 438 VDKLHKLYATS-APPVVLLRTFGLQLTNALAPVKNFIMVT 476 (481)
T ss_pred HHHHHHHHhcc-CCcEEEEeccchhhccccccHHHHHHHH
Confidence 88999999888 7777777777666444433334444443
No 48
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.14 E-value=3.6e-11 Score=99.21 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=37.5
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHI 98 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L 98 (198)
.+|+.+||+|||||||.++|+.|||+|+||+||..+|++|
T Consensus 256 ~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 256 DKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 3788999999999999999999999999999999998864
No 49
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.08 E-value=8.2e-10 Score=95.73 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=63.7
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|..+||+|||||||.++|++|||.+.||.++..+|+.+...... .....|+.|++..+.........
T Consensus 259 ~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~-----------~~~~~L~~Y~~~~~~~~~~~~~~ 327 (388)
T TIGR02023 259 PRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQN-----------GDATDLRHYERKFMKLYGTTFRV 327 (388)
T ss_pred ccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999887642 12467999999877766665566
Q ss_pred HHHhhhhhcC
Q 036400 139 SYLSGWVQDG 148 (198)
Q Consensus 139 s~~~~~~~~~ 148 (198)
++....++..
T Consensus 328 ~~~~~~~~~~ 337 (388)
T TIGR02023 328 LRVLQMVYYR 337 (388)
T ss_pred HHHHHHHHcc
Confidence 6666555533
No 50
>PRK11445 putative oxidoreductase; Provisional
Probab=99.08 E-value=3.2e-10 Score=97.11 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=59.8
Q ss_pred ccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036400 61 LSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSY 140 (198)
Q Consensus 61 w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~ 140 (198)
+..+||+|||||||.++|++|||++.||+|+..|++.|.. .....++.|++..+.-.-+
T Consensus 261 ~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~---------------~~~~~~~~y~~~~~~~~~~------ 319 (351)
T PRK11445 261 CGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNK---------------QPEKLNTAYWRKTRKLRLK------ 319 (351)
T ss_pred cCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHh---------------cccchHHHHHHHHHHHHHH------
Confidence 3468999999999999999999999999999999999975 2355688998765543322
Q ss_pred HhhhhhcCCCChHHHHHHHHHHHH
Q 036400 141 LSGWVQDGGSNWWMRFLRDVIFYR 164 (198)
Q Consensus 141 ~~~~~~~~~~~~~~~~~r~~~~~~ 164 (198)
...+.+.++ --...++|.++|+.
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~~~~ 342 (351)
T PRK11445 320 LFGKILKSP-FMYNPALRKLIMRS 342 (351)
T ss_pred HHHHHhcCh-hhhhHHHHHHHHHh
Confidence 233444333 22235677777653
No 51
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.94 E-value=3.5e-09 Score=91.44 Aligned_cols=63 Identities=21% Similarity=0.137 Sum_probs=51.6
Q ss_pred ccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 036400 61 LSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTG 134 (198)
Q Consensus 61 w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~ 134 (198)
++.+||+|||||||.++|.+|+|++.|+++|..||+.|.++... ....+++.|++.-+++..+
T Consensus 259 ~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 259 FLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQ-----------SSELATAAWDGLWPTERRR 321 (388)
T ss_pred ccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhcc-----------CHHHHHHHHHHhchHHHHH
Confidence 47899999999999999999999999999999999999887642 3467788887654444433
No 52
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.94 E-value=6.5e-09 Score=92.12 Aligned_cols=84 Identities=14% Similarity=-0.007 Sum_probs=66.3
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|..||++|+|||||.++|+.|+|.+.||.++..+|+.+.+..... +...-...|+.|++..+.........
T Consensus 304 ~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g-------~~~~s~~~L~~Y~~~~~~~~g~~~~~ 376 (450)
T PLN00093 304 PRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENG-------TRMVDEADLREYLRKWDKKYWPTYKV 376 (450)
T ss_pred cceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcC-------CCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999998765421 00012456899998777767777777
Q ss_pred HHHhhhhhcCC
Q 036400 139 SYLSGWVQDGG 149 (198)
Q Consensus 139 s~~~~~~~~~~ 149 (198)
+..+.+++..+
T Consensus 377 ~~~l~~~~~~~ 387 (450)
T PLN00093 377 LDILQKVFYRS 387 (450)
T ss_pred HHHHHHHHcCC
Confidence 77777776554
No 53
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.90 E-value=1.3e-08 Score=88.66 Aligned_cols=84 Identities=18% Similarity=0.054 Sum_probs=66.0
Q ss_pred cCccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 59 GNLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 59 ~~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
++|..+|++|+|||||.++|++|+|.+.||.++..+|+.+.++.... +...-...|+.|++.-+.........
T Consensus 265 ~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~-------~~~~~~~~l~~Y~~~~~~~~~~~~~~ 337 (398)
T TIGR02028 265 PRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLG-------GAVTEEGDLAGYLRRWDKEYRPTYRV 337 (398)
T ss_pred ccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcC-------CCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999998765421 10013467999998766666677777
Q ss_pred HHHhhhhhcCC
Q 036400 139 SYLSGWVQDGG 149 (198)
Q Consensus 139 s~~~~~~~~~~ 149 (198)
+..+.+++..+
T Consensus 338 ~~~~~~~~~~~ 348 (398)
T TIGR02028 338 LDLLQRVFYRS 348 (398)
T ss_pred HHHHHHHHcCC
Confidence 77777766554
No 54
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.57 E-value=7.6e-08 Score=83.25 Aligned_cols=64 Identities=19% Similarity=0.064 Sum_probs=51.2
Q ss_pred CCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 036400 63 KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIG 138 (198)
Q Consensus 63 ~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~ 138 (198)
.++|++||||||.++|.+|||++.+++||..|++++... .. .+..++..|...|++|.....-.
T Consensus 250 ~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~~~~~ 313 (370)
T TIGR01789 250 VRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLS----------SE--QLAAFIDSRARRHWSKTGYYRLL 313 (370)
T ss_pred CCceeeeecccccccccccccHHHHHHHHHHHHhccCcC----------cc--chhhhhhHHHHHHHHHhHHHHHH
Confidence 455999999999999999999999999999999998510 11 45567888998887777654433
No 55
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.98 E-value=0.00015 Score=62.56 Aligned_cols=152 Identities=19% Similarity=0.099 Sum_probs=107.8
Q ss_pred cCCCCCCC-ChHHHHHHHHHHHhccCCHHHHHH-HHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCc
Q 036400 3 VSGENKAG-NPELIQKEVLEKYAKVLPPFYSVI-VRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDL 80 (198)
Q Consensus 3 ~~~~~~~~-~~~~~k~~l~~~~~~~~~~~~~~l-i~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~ 80 (198)
++++.+|. ...|++..+++.....-++.+++. ++..+.+.+..-|-...++- .....+++|+|||-.-=+|..
T Consensus 268 v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~-----~~~~~G~illGDAfNMRHPlt 342 (509)
T KOG1298|consen 268 VPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPAT-----LNDKKGVILLGDAFNMRHPLT 342 (509)
T ss_pred cCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCC-----cCCCCceEEEcccccccCCcc
Confidence 34555654 334788888887774556666554 45566555555555444442 345789999999999999999
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHHHHHHHH
Q 036400 81 GQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLSGWVQDGGSNWWMRFLRDV 160 (198)
Q Consensus 81 GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~r~~ 160 (198)
|-|+.-|+.|.+.|-+.|.....- .+...+.+.++.|...|++....+-..+.....+|....+-....+|..
T Consensus 343 ggGMtV~l~Di~lLr~ll~pl~dL-------~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~g 415 (509)
T KOG1298|consen 343 GGGMTVALSDIVLLRRLLKPLPDL-------SDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKG 415 (509)
T ss_pred CCceEeehhHHHHHHHHhcccccc-------ccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 999999999999999999763221 1223678899999999999877777778888888877315556667776
Q ss_pred HHHHhh
Q 036400 161 IFYRFL 166 (198)
Q Consensus 161 ~~~~~~ 166 (198)
-+..+.
T Consensus 416 CfdYl~ 421 (509)
T KOG1298|consen 416 CFDYLK 421 (509)
T ss_pred HHHHHh
Confidence 666433
No 56
>PRK10015 oxidoreductase; Provisional
Probab=97.94 E-value=4.1e-05 Score=67.56 Aligned_cols=81 Identities=15% Similarity=0.007 Sum_probs=58.8
Q ss_pred CccCCCEEEecCCCCcCC--CCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHH-HHHHH
Q 036400 60 NLSKGNVTVAGDAMHPMT--PDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWR-VTGLV 136 (198)
Q Consensus 60 ~w~~grVvLiGDAAH~m~--P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r-~~~~~ 136 (198)
+.+.++++|+||||...+ |+.|+|.+.||..+...|+.+.++.... + -....|..|++.-+.. +-+-.
T Consensus 291 ~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~-------d--~s~~~l~~Y~~~~~~~~~~~~l 361 (429)
T PRK10015 291 QLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERA-------D--FSASSLAQYKRELEQSCVMRDM 361 (429)
T ss_pred ccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcC-------C--CccccHHHHHHHHHHCHHHHHH
Confidence 567899999999999998 5699999999999999999998876531 1 2245678998764433 43434
Q ss_pred HHHHHhhhhhcCC
Q 036400 137 IGSYLSGWVQDGG 149 (198)
Q Consensus 137 ~~s~~~~~~~~~~ 149 (198)
...+.+..++..+
T Consensus 362 ~~~~~~~~~~~~~ 374 (429)
T PRK10015 362 QHFRKIPALMENP 374 (429)
T ss_pred HHHhChHhhhcCc
Confidence 4455555555543
No 57
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.86 E-value=8.5e-05 Score=65.49 Aligned_cols=80 Identities=14% Similarity=-0.031 Sum_probs=58.5
Q ss_pred CccCCCEEEecCCCCcCCC--CchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 036400 60 NLSKGNVTVAGDAMHPMTP--DLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVI 137 (198)
Q Consensus 60 ~w~~grVvLiGDAAH~m~P--~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~ 137 (198)
+.+.++++++||||-..+| +.|+|.+.||..+...|+.+..+.... + .....|..|++.-+..+-+-.+
T Consensus 291 ~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~-------~--~s~~~l~~Y~~~l~~~~~~~l~ 361 (428)
T PRK10157 291 ELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD-------D--FSKQKLAEYRQHLESGPLRDMR 361 (428)
T ss_pred ceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC-------C--cchhhHHHHHHHHHHhHHHHHH
Confidence 4578999999999999988 599999999999999999998876531 1 2345789998765544433344
Q ss_pred HHHHhhhhhcC
Q 036400 138 GSYLSGWVQDG 148 (198)
Q Consensus 138 ~s~~~~~~~~~ 148 (198)
..+....++..
T Consensus 362 ~~~~~~~~~~~ 372 (428)
T PRK10157 362 MYQKLPAFLDN 372 (428)
T ss_pred HHhccHHHhcC
Confidence 44444455543
No 58
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.76 E-value=0.00014 Score=63.44 Aligned_cols=72 Identities=19% Similarity=0.151 Sum_probs=57.2
Q ss_pred ccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036400 61 LSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSY 140 (198)
Q Consensus 61 w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~ 140 (198)
++.++++||||||-..+|+.|.|...||..|..+|+.+..+... . ...|..|++..+.....-.....
T Consensus 266 ~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~-----------~-~~~l~~Y~~~~~~~~~~~~~~~~ 333 (396)
T COG0644 266 LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEG-----------G-EEALAEYERLLRKSLAREDLKSL 333 (396)
T ss_pred cccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHc-----------C-hhHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999987642 3 56777788876665555444444
Q ss_pred Hhhh
Q 036400 141 LSGW 144 (198)
Q Consensus 141 ~~~~ 144 (198)
...+
T Consensus 334 ~~~~ 337 (396)
T COG0644 334 RLLK 337 (396)
T ss_pred hhhh
Confidence 4433
No 59
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.26 E-value=0.00084 Score=59.77 Aligned_cols=85 Identities=19% Similarity=0.087 Sum_probs=58.0
Q ss_pred CccCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036400 60 NLSKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGS 139 (198)
Q Consensus 60 ~w~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s 139 (198)
+...+|+++|||||..+.|..++|..+++..+..|+..|... . .-+.+++.|++........+...-
T Consensus 312 ~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~-----------~--~~~~~~~~Yn~~~~~~~~~~~~fi 378 (454)
T PF04820_consen 312 QFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD-----------D--FSPAALDRYNRRMRREYERIRDFI 378 (454)
T ss_dssp SSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT-----------T--CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccC-----------C--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678999999999999999999999999888888888652 1 226688999988877777666554
Q ss_pred HHhhh-hhcCCCChHHHHHH
Q 036400 140 YLSGW-VQDGGSNWWMRFLR 158 (198)
Q Consensus 140 ~~~~~-~~~~~~~~~~~~~r 158 (198)
...-. ....+ +++++..|
T Consensus 379 ~~hY~~~~r~d-s~FW~~~~ 397 (454)
T PF04820_consen 379 SLHYQLSRRRD-SPFWRARR 397 (454)
T ss_dssp HHHHHTHHS-S-SHHHHHHC
T ss_pred HHHHccccCCC-CHHHHhcc
Confidence 32222 12334 56766655
No 60
>PLN02697 lycopene epsilon cyclase
Probab=96.77 E-value=0.011 Score=53.69 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=49.5
Q ss_pred CCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCC-CC-CCCchhHHHHHHHHHHHH
Q 036400 63 KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGH-IA-TTGDNNVAQAIDGYVKER 128 (198)
Q Consensus 63 ~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~-~~-~~~~~~~~~al~~Ye~~R 128 (198)
.++++++||||..++|.+|.|...++..|..+|+.++++....... .. ... ....+++.|++.-
T Consensus 371 ~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~--~~~~~l~~~~~lw 436 (529)
T PLN02697 371 EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSN--SSNISMQAWNTLW 436 (529)
T ss_pred CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCcccccccccc--chHHHHHHHHHhC
Confidence 6899999999999999999999999999999999999887642100 00 001 3567788888753
No 61
>PLN02463 lycopene beta cyclase
Probab=95.12 E-value=0.057 Score=48.08 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=39.9
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHh
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIK 104 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~ 104 (198)
..+||++|||||-.+.|.+|.|...++..|..+|+.+.++...
T Consensus 292 ~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 292 IPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred CCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999999999999999988753
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=92.06 E-value=0.3 Score=42.22 Aligned_cols=81 Identities=12% Similarity=-0.042 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHhCCCCCcccccccccCCccccccCccCCCEEEecCCCCcCCCCchhhHhhHHH
Q 036400 10 GNPELIQKEVLEKYAKVLPPFYSVIVRRSDASTLHWAPLMFRHPWNVFFGNLSKGNVTVAGDAMHPMTPDLGQGGCQALE 89 (198)
Q Consensus 10 ~~~~~~k~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~~~~~w~~grVvLiGDAAH~m~P~~GqGan~Aie 89 (198)
.+.+++++.+.+.++ ...-...++++. ..-..|+....+. +-..++|+.+|+||-.+.|.+|.++..+++
T Consensus 210 ~~~~~~~~~l~~~l~-~~g~~~~~i~~~----E~G~IPm~~~~~~-----~~~~~~v~~iG~agG~v~PsTGYs~~~~~~ 279 (374)
T PF05834_consen 210 LPEEELKARLRRYLE-RLGIDDYEILEE----ERGVIPMTTGGFP-----PRFGQRVIRIGTAGGMVKPSTGYSFARIQR 279 (374)
T ss_pred CCHHHHHHHHHHHHH-HcCCCceeEEEe----ecceeecccCCCc-----cccCCCeeeEEccccCCCCcccHHHHHHHH
Confidence 556778888887777 322122222211 1122455222221 234667999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 036400 90 DAVVLGRHIGN 100 (198)
Q Consensus 90 Da~~La~~L~~ 100 (198)
.|..+|+.|..
T Consensus 280 ~a~~ia~~l~~ 290 (374)
T PF05834_consen 280 QADAIADALAK 290 (374)
T ss_pred HHHHHHHHHhh
Confidence 99999998875
No 63
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=74.62 E-value=7 Score=26.16 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=27.4
Q ss_pred ecCCCCcCCCCchhhHhhHHHHHH-HHHHHHHH
Q 036400 69 AGDAMHPMTPDLGQGGCQALEDAV-VLGRHIGN 100 (198)
Q Consensus 69 iGDAAH~m~P~~GqGan~AieDa~-~La~~L~~ 100 (198)
+|-|-+.|+|..=+.+..||+||. .|......
T Consensus 19 vG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~ 51 (79)
T PF10819_consen 19 VGQATMSMDPDQLEHATQAVEDAREQLSQAKSH 51 (79)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688889999999999999999999 66666654
No 64
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=36.21 E-value=25 Score=30.79 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=15.6
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHH
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALE 89 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~Aie 89 (198)
...+|+|+||+| |+|++|.
T Consensus 193 G~~nI~LmGDSA---------GGnL~Ls 211 (374)
T PF10340_consen 193 GNKNIILMGDSA---------GGNLALS 211 (374)
T ss_pred CCCeEEEEecCc---------cHHHHHH
Confidence 467999999998 7788764
No 65
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=32.11 E-value=48 Score=26.80 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=23.8
Q ss_pred CCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHH
Q 036400 63 KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100 (198)
Q Consensus 63 ~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~ 100 (198)
..+|..+||+++... .-+..|+.++...|..+..
T Consensus 265 ~~~vya~GD~~~~~~----~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 265 VPGVFAAGDVRDKGY----RQAVTAAGDGCIAALSAER 298 (300)
T ss_pred CCCEEEeecccCcch----hhhhhhhhhHHHHHHHHHh
Confidence 568999999997422 2355777777777766643
No 66
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=31.59 E-value=82 Score=26.66 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=28.8
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHH
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLI 103 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~ 103 (198)
...+|..+||++....+....-+..|+..|..+|.-|.....
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~ 311 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLR 311 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhc
Confidence 357899999999654322222345688888888888876543
No 67
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=31.55 E-value=57 Score=28.02 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=33.0
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHH
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLI 103 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~ 103 (198)
.+.||.+.| ..||.|+|..++-|+...+.-.+..+..
T Consensus 197 ~~PrIaV~G-----LNPHAGE~G~~G~EE~~iI~PAi~~~~~ 233 (329)
T PRK01909 197 AAPRILVTG-----LNPHAGENGYLGREEIDVIEPALARARA 233 (329)
T ss_pred CCCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 467999999 9999999999999999999999887654
No 68
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=30.90 E-value=61 Score=27.74 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=33.0
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHH
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLI 103 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~ 103 (198)
.+.||.+.| ..||.|.|..++-||...+.-.+..+..
T Consensus 194 ~~PrIaV~g-----LNPHAGE~G~~G~EE~~iI~PAI~~~~~ 230 (320)
T TIGR00557 194 ARPRIAVAG-----LNPHAGEGGHLGREEIDIIIPALEALRA 230 (320)
T ss_pred CCCCEEEEe-----cCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 467999998 9999999999999999999999987654
No 69
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=30.90 E-value=46 Score=22.62 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=23.5
Q ss_pred CCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHH
Q 036400 63 KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100 (198)
Q Consensus 63 ~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~ 100 (198)
..+|.+-|.++|+..|..|. | |++-+..+...|..
T Consensus 8 ~~~i~~~G~~~H~s~~~~g~--n-ai~~~~~~l~~l~~ 42 (111)
T PF07687_consen 8 WFRITITGKSGHSSRPEKGV--N-AIEAAARFLNALEE 42 (111)
T ss_dssp EEEEEEESBSEETTSGGGSB--C-HHHHHHHHHHHHHH
T ss_pred EEEEEEEeeccCCCCccCcc--C-HHHHHHHHHHHHHH
Confidence 46789999999999775553 3 55544555555544
No 70
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=30.73 E-value=58 Score=28.05 Aligned_cols=37 Identities=30% Similarity=0.521 Sum_probs=32.9
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHH
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLI 103 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~ 103 (198)
.+.||.+.| ..||.|.|..++-|+...+.-.+..+..
T Consensus 206 ~~PrIaV~G-----LNPHAGE~G~~G~EE~~iI~PAI~~~~~ 242 (336)
T PRK05312 206 ASPRLAVAG-----LNPHAGEGGALGREDIDIIAPAIEQLRA 242 (336)
T ss_pred CCCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 357999998 9999999999999999999999987654
No 71
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=29.57 E-value=61 Score=27.87 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=32.7
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHH
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLI 103 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~ 103 (198)
.+.||.+.| .+||.|.|..++-|+...+.-.+..+..
T Consensus 201 ~~PrIaV~g-----LNPHAGE~G~~G~EE~~iI~PAI~~~~~ 237 (332)
T PRK00232 201 AEPRIAVCG-----LNPHAGEGGHFGREEIDIIIPALEELRA 237 (332)
T ss_pred CCCcEEEEe-----eCCCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 356999998 9999999999999999999999987654
No 72
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=28.74 E-value=68 Score=27.53 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=32.8
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHH
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLI 103 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~ 103 (198)
.+.||.+.| .+||.|.|..++-|+...+.-.+..+..
T Consensus 200 ~~PrIaV~g-----LNPHAGE~G~~G~EE~~iI~PAi~~~~~ 236 (326)
T PRK03371 200 VKPRIAVAG-----VNPHAGENGLFGDEEIRIVTPAIEAMRA 236 (326)
T ss_pred CCCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 367899998 9999999999999999999988877654
No 73
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=28.09 E-value=69 Score=27.74 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.4
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHh
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIK 104 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~ 104 (198)
.+.||.+.| .+||.|.|..++-|+...+.-.+..+...
T Consensus 204 ~~PrIaV~G-----LNPHAGE~G~~G~EE~~iI~PAIe~~r~~ 241 (345)
T PRK02746 204 EKPRIAIAG-----LNPHAGEQGQLGTEEKDWLIPWLESWRQK 241 (345)
T ss_pred CCCcEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHHHhc
Confidence 367999998 99999999999999999999999876543
No 74
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=27.94 E-value=79 Score=28.26 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=27.2
Q ss_pred CCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHH
Q 036400 64 GNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100 (198)
Q Consensus 64 grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~ 100 (198)
.++.|+|+.+|+ |.|...++..+...|+.+..
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 459 PGLYCVGDSCFP-----GQGLNAVAFSGFACAHRVAA 490 (493)
T ss_pred CCeEEecCcCCC-----CCCHHHHHHHHHHHHHHHHh
Confidence 689999999864 88999999999988888754
No 75
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=27.80 E-value=1.1e+02 Score=25.88 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=26.1
Q ss_pred CCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHH
Q 036400 63 KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLL 102 (198)
Q Consensus 63 ~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~ 102 (198)
..+|..+||+++.. . -+..|+.++...|..+...+
T Consensus 315 ~~~vyaiGD~~~~~--~---~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 315 REGVFAAGDVVTGP--S---KIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCCEEEEcccccCc--c---hHHHHHHHHHHHHHHHHHHH
Confidence 47899999998742 1 25688888888888876643
No 76
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=27.01 E-value=77 Score=27.29 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=32.8
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHH
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLI 103 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~ 103 (198)
.+.||.+.| .+||.|.|..++-|+...+.-++..+..
T Consensus 201 ~~PrIaV~G-----LNPHAGE~G~~G~EE~~iI~PAI~~~~~ 237 (332)
T PRK03743 201 KNPKIAVAG-----LNPHSGEHGLFGDEEVDEIIPAVEAAQE 237 (332)
T ss_pred CCCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 367999998 9999999999999999999999987654
No 77
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=26.83 E-value=83 Score=28.00 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=27.4
Q ss_pred CCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHH
Q 036400 64 GNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100 (198)
Q Consensus 64 grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~ 100 (198)
.++.|+|+.+|+ |.|...++..+...|+.|..
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 459 KGLWLCGDSIHP-----GEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCeEEecCccCC-----CCcHHHHHHHHHHHHHHHhh
Confidence 589999999876 88999999999998888753
No 78
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=26.74 E-value=73 Score=27.37 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=33.6
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHHh
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLIK 104 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~~ 104 (198)
...|+.+.| .+||.|+|..++-||-..+.-.+..+...
T Consensus 200 ~~PriaVaG-----LNPHaGE~G~lG~EE~diI~Paie~aR~~ 237 (332)
T COG1995 200 AEPRIAVAG-----LNPHAGEGGLLGREEIDIIIPAIEEARAE 237 (332)
T ss_pred CCcceEEec-----cCCCCCcCCCCCchhHHHHHHHHHHHHHh
Confidence 467999999 99999999999999999999898876653
No 79
>PF04922 DIE2_ALG10: DIE2/ALG10 family; InterPro: IPR007006 Members of this entry are glycosyltransferases, belonging to the ALG10 family. The majority of the members are annotated as alpha-1,2 glucosyltransferas. The ALG10 protein from Saccharomyces cerevisiae (Baker's yeast) encodes the alpha-1,2 glucosyltransferase of the endoplasmic reticulum. This protein has been characterised in Rat as potassium channel regulator 1 [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane
Probab=25.45 E-value=39 Score=29.59 Aligned_cols=25 Identities=32% Similarity=0.266 Sum_probs=19.3
Q ss_pred CCCEEEecC-CCCcCCCCchhhHhhHH
Q 036400 63 KGNVTVAGD-AMHPMTPDLGQGGCQAL 88 (198)
Q Consensus 63 ~grVvLiGD-AAH~m~P~~GqGan~Ai 88 (198)
+|+||| || .+|.+++|..|=.=...
T Consensus 222 NGgIVl-GDKsnH~a~~H~~Ql~Yf~~ 247 (379)
T PF04922_consen 222 NGGIVL-GDKSNHVATLHLPQLFYFWL 247 (379)
T ss_pred cCeEEE-CccccCCccccHHHHHHHHH
Confidence 577775 88 68999999999655444
No 80
>PRK07233 hypothetical protein; Provisional
Probab=24.97 E-value=1e+02 Score=26.48 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=26.8
Q ss_pred CCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHH
Q 036400 63 KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100 (198)
Q Consensus 63 ~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~ 100 (198)
.+|+.++||. . ....|.|+..||+.+...|+.+..
T Consensus 395 ~~~l~~aG~~--~-~~~~~~~~~~Ai~sG~~aA~~i~~ 429 (434)
T PRK07233 395 IEGLYLAGMS--Q-IYPEDRSINGSVRAGRRVAREILE 429 (434)
T ss_pred cCCEEEeCCc--c-cCCccCchhHHHHHHHHHHHHHhh
Confidence 4899999993 2 223456889999999999988865
No 81
>smart00035 CLa CLUSTERIN alpha chain.
Probab=23.67 E-value=3.9e+02 Score=21.53 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=9.3
Q ss_pred HhhHHHHHHHHHHHHHH
Q 036400 84 GCQALEDAVVLGRHIGN 100 (198)
Q Consensus 84 an~AieDa~~La~~L~~ 100 (198)
.-.-++||..||+.+..
T Consensus 96 Lr~El~eAL~LaE~ftq 112 (216)
T smart00035 96 LRQELDESLQLAERFTQ 112 (216)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555566666655544
No 82
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=23.05 E-value=95 Score=26.37 Aligned_cols=32 Identities=34% Similarity=0.533 Sum_probs=22.2
Q ss_pred CEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHH
Q 036400 65 NVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIG 99 (198)
Q Consensus 65 rVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~ 99 (198)
+|.+-|.++|+..|..|.. ||.-+..+...|.
T Consensus 174 ~i~~~G~~~Has~p~~g~n---Ai~~~~~~i~~l~ 205 (363)
T TIGR01891 174 EVTIHGKGAHAARPHLGRD---ALDAAAQLVVALQ 205 (363)
T ss_pred EEEEEeecccccCcccccC---HHHHHHHHHHHHH
Confidence 5889999999998976654 4444444444444
No 83
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=22.96 E-value=1.2e+02 Score=27.06 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=28.2
Q ss_pred CCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHH
Q 036400 63 KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGN 100 (198)
Q Consensus 63 ~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~ 100 (198)
-.++.|+|+.+|+ |.|...++..+...|+.|..
T Consensus 458 i~gLyl~G~~~~p-----G~Gv~g~~~sg~~~a~~il~ 490 (502)
T TIGR02734 458 IDNLYLVGAGTHP-----GAGVPGVLGSAKATAKLMLG 490 (502)
T ss_pred CCCEEEeCCCCCC-----CCCHHHHHHHHHHHHHHHHh
Confidence 3689999999765 88999999999999988865
No 84
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=22.96 E-value=1.3e+02 Score=26.52 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=27.5
Q ss_pred CCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHH
Q 036400 63 KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNL 101 (198)
Q Consensus 63 ~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~ 101 (198)
.+++.+.||. +.|.|.+-||..+...|+.+...
T Consensus 428 ~~~l~~aG~~------~~g~~i~~ai~sg~~aA~~i~~~ 460 (463)
T PRK12416 428 YPNIYLAGAS------YYGVGIGACIGNGKNTANEIIAT 460 (463)
T ss_pred CCCeEEeccc------cccccHHHHHHHHHHHHHHHHHH
Confidence 3799999999 55778999999999999888653
No 85
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=22.85 E-value=2.6e+02 Score=19.21 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=35.3
Q ss_pred EecCCCCc--CCCCchhhHhhHHHHHHHHHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036400 68 VAGDAMHP--MTPDLGQGGCQALEDAVVLGRHIGNLLIKTKGHIATTGDNNVAQAIDGYVKERKWRVTGLVIGSYLS 142 (198)
Q Consensus 68 LiGDAAH~--m~P~~GqGan~AieDa~~La~~L~~~~~~~~~~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~ 142 (198)
=++++++. ..|. .|.|++..-|-.+ +.|..+.. ++.++++.|+..-...+.++.+....+
T Consensus 17 ~L~s~~~~~~y~pl--K~gnMaysraNsi-n~~r~Al~------------dLv~~Ve~fq~v~~~DA~RlkkmG~a~ 78 (90)
T PF11328_consen 17 KLKSKASGVEYLPL--KNGNMAYSRANSI-NQLRTALI------------DLVDVVENFQQVVKKDASRLKKMGKAF 78 (90)
T ss_pred HHHcccCCcccccc--cCCCeehhhhhhH-HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777 4454 3445555444422 22222222 677888999988887777776665443
No 86
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=22.83 E-value=67 Score=27.33 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=30.7
Q ss_pred CCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHH
Q 036400 63 KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLL 102 (198)
Q Consensus 63 ~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~ 102 (198)
..||.+.| .+||.|.|..++-|+. .+.-.+..+.
T Consensus 177 ~PrIaV~g-----LNPHAGE~G~~G~EE~-iI~PAi~~~~ 210 (307)
T PRK03946 177 FKKIGVLG-----LNPHAGDNGVIGGEEE-EIKKAIKKAN 210 (307)
T ss_pred CCCEEEEe-----eCCCCCCCCCCCcchH-HHHHHHHHHH
Confidence 37999998 9999999999999999 9998888765
No 87
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=22.60 E-value=1.1e+02 Score=25.50 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=23.7
Q ss_pred CCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHH
Q 036400 64 GNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHI 98 (198)
Q Consensus 64 grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L 98 (198)
.|+.|.||..|.-.+ .|++-|+..+..-|+.+
T Consensus 418 ~~l~~aG~~~~~~~~---~~~~gA~~sG~~aA~~i 449 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYP---GGIEGAILSGRRAAEEI 449 (450)
T ss_dssp TTEEE-SGGGSSSST---TSHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCC---CcHHHHHHHHHHHHHHh
Confidence 599999998776544 48888888888777654
No 88
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=22.10 E-value=93 Score=25.32 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=21.6
Q ss_pred cCCCEEEecCCCCcCCCCchhhHhhHHHHHH
Q 036400 62 SKGNVTVAGDAMHPMTPDLGQGGCQALEDAV 92 (198)
Q Consensus 62 ~~grVvLiGDAAH~m~P~~GqGan~AieDa~ 92 (198)
.+.+++|.||+.--++-..| |-+.++.|.+
T Consensus 5 ~rp~i~LFGdSItq~sF~~g-GwGA~Lad~y 34 (245)
T KOG3035|consen 5 MRPRIVLFGDSITQFSFTDG-GWGAALADLY 34 (245)
T ss_pred ccccEEEecchhhhhcccCC-chhHHHHHHH
Confidence 46799999999988776655 5555555544
No 89
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=21.73 E-value=1.7e+02 Score=25.53 Aligned_cols=41 Identities=24% Similarity=0.149 Sum_probs=27.4
Q ss_pred CCCEEEecCCCCcCCCCchhhHhhHHHHHHHHHHHHHHHHH
Q 036400 63 KGNVTVAGDAMHPMTPDLGQGGCQALEDAVVLGRHIGNLLI 103 (198)
Q Consensus 63 ~grVvLiGDAAH~m~P~~GqGan~AieDa~~La~~L~~~~~ 103 (198)
..+|..+||++..-.+-...-+..|+.-+..+|+.|.....
T Consensus 308 ~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 308 IPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 46899999999753211122245678888888888876553
No 90
>KOG4479 consensus Transcription factor e(y)2 [Transcription]
Probab=21.33 E-value=1.7e+02 Score=19.88 Aligned_cols=31 Identities=6% Similarity=0.103 Sum_probs=24.3
Q ss_pred CCCChHHHHHHHHHHHhc-cCCHHHHHHHHhC
Q 036400 8 KAGNPELIQKEVLEKYAK-VLPPFYSVIVRRS 38 (198)
Q Consensus 8 ~~~~~~~~k~~l~~~~~~-~~~~~~~~li~~~ 38 (198)
...+.+.+|+.+..++-+ +|...++.+....
T Consensus 13 ~tgdr~~lKeLL~trLvECGW~d~ik~mcrni 44 (92)
T KOG4479|consen 13 RTGDRAALKELLHTRLVECGWHDDIKEMCRNI 44 (92)
T ss_pred hcccHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 356888899998877655 8999998887653
No 91
>COG5654 Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=47 Score=25.45 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=18.2
Q ss_pred CCEEEecCCCCcCCCCchhhHh
Q 036400 64 GNVTVAGDAMHPMTPDLGQGGC 85 (198)
Q Consensus 64 grVvLiGDAAH~m~P~~GqGan 85 (198)
.-+.=+||..|+.+|+.|.|+.
T Consensus 11 ~t~yR~~~pr~a~~~~sG~GA~ 32 (163)
T COG5654 11 LTCYRIGDPRWAYSPFSGEGAA 32 (163)
T ss_pred eEEEEecCccccCCCcCCCcce
Confidence 3455599999999999999974
Done!