BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036401
(1154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/185 (51%), Positives = 127/185 (68%), Gaps = 15/185 (8%)
Query: 968 TVTEEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTR---SNTHPL 1024
+ E E + EEK+ + + +K+KR LF + F+++S +D IY++LT+ SN
Sbjct: 239 VINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELA 298
Query: 1025 GGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPF 1084
GG A L +E+ED+PF GIKY A PP KRF+DME LSGGEKTVAALALLF+I+SY+PSPF
Sbjct: 299 GGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPF 358
Query: 1085 FILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEAL 1144
F+LDEVDAALD NV ++A +IR N D Q IVISLK++ ++K++AL
Sbjct: 359 FVLDEVDAALDITNVQRIAAYIRRHR------NPD------LQFIVISLKNTMFEKSDAL 406
Query: 1145 VGVYR 1149
VGVYR
Sbjct: 407 VGVYR 411
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 122/176 (69%), Gaps = 15/176 (8%)
Query: 8 GKIHRLELENFKSYKGLQIIGPF--SDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGG 65
G++ LEL NFKSY+G+ +G F S+FT+IIGPNG+GKSN+MDAISFVLGVR+ LR
Sbjct: 2 GRLVGLELSNFKSYRGVTKVG-FGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSN 60
Query: 66 QLKDLIY-------AYDDKEKEQKG----RRAFVRLVYQLGNESELQFTRTITSSGGSEY 114
LKDLIY DD + E + A+V+ YQ GN+ ++ R I+ +G + Y
Sbjct: 61 ILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKL-VELMRIISRNGDTSY 119
Query: 115 RIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGS 170
+IDG+ V++ +Y+ L + IL+KA+NFLVFQGDVE IA+++P EL+ + E++SGS
Sbjct: 120 KIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGS 175
>pdb|2WD5|A Chain A, Smc Hinge Heterodimer (Mouse)
Length = 233
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 113/214 (52%), Gaps = 52/214 (24%)
Query: 471 SRQKYENLKSKIGEIENQLRELKADRHENERDAKLSQAVETLKRLFQG-VHGRMTDLCRP 529
++++ + + ++ ++ QL + + DR E+ R + ++ +E++KRL+ G V+GR+ DLC+P
Sbjct: 6 AKRRIDEINKELNQVMEQLGDARIDRQESSRQQRKAEIMESIKRLYPGSVYGRLIDLCQP 65
Query: 530 TQKKYNLAVTVAMGKFMDAVVVEDENTGKECI---------------------------- 561
TQKKY +AVT +GK MDA++V+ E TG++CI
Sbjct: 66 TQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKL 125
Query: 562 ---------------------KAVLFAVGNTLVCDGLDEAKVLSWSG-ERFRVVTVDGIL 599
KA+ +A GN LVCD +++A+ +++ G +R + V +DG L
Sbjct: 126 RELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTL 185
Query: 600 LTKAXXXXXXXXXXXEARSKQWDDKKIEGLKRKK 633
K+ +A++++WD+K ++ LK KK
Sbjct: 186 FQKS-GVISGGASDLKAKARRWDEKAVDKLKEKK 218
>pdb|1XEW|Y Chain Y, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 86/151 (56%), Gaps = 19/151 (12%)
Query: 997 LFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRD 1056
+FM F IS + I+ +L+ GG+A L LEN +DPF G++ A P K +
Sbjct: 7 VFMRTFEAISRNFSEIFAKLSP------GGSARLILENPEDPFSGGLEIEAKPAGKDVKR 60
Query: 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRG 1116
+E +SGGEK + ALA +F+I +KP+PF++ DE+DA LD+ NV +VA I+ S E
Sbjct: 61 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKES--- 117
Query: 1117 NQDADEGNGFQSIVISLKDSFYDKAEALVGV 1147
Q IVI+L+D A+ ++GV
Sbjct: 118 ----------QFIVITLRDVMMANADKIIGV 138
>pdb|1XEX|B Chain B, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 19/151 (12%)
Query: 997 LFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRD 1056
+FM F IS + I+ +L+ GG+A L LEN +DPF G++ A P K +
Sbjct: 7 VFMRTFEAISRNFSEIFAKLSP------GGSARLILENPEDPFSGGLEIEAKPAGKDVKR 60
Query: 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRG 1116
+E +SGGEK + ALA +F+I +KP+PF++ D++DA LD+ NV +VA I+ S E
Sbjct: 61 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDQIDAHLDDANVKRVADLIKESSKES--- 117
Query: 1117 NQDADEGNGFQSIVISLKDSFYDKAEALVGV 1147
Q IVI+L+D A+ ++GV
Sbjct: 118 ----------QFIVITLRDVMMANADKIIGV 138
>pdb|3KTA|B Chain B, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
pdb|3KTA|D Chain D, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
Length = 173
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 19/151 (12%)
Query: 997 LFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRD 1056
+F F IS + I+ +L+ GG+A L LEN +DPF G++ A P K +
Sbjct: 8 VFXRTFEAISRNFSEIFAKLSP------GGSARLILENPEDPFSGGLEIEAKPAGKDVKR 61
Query: 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRG 1116
+E SGGEK + ALA +F+I +KP+PF++ DE+DA LD+ NV +VA I+ S E
Sbjct: 62 IEAXSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKES--- 118
Query: 1117 NQDADEGNGFQSIVISLKDSFYDKAEALVGV 1147
Q IVI+L+D A+ ++GV
Sbjct: 119 ----------QFIVITLRDVXXANADKIIGV 139
>pdb|4I99|A Chain A, Crystal Structure Of The Smchead Bound To The C-winged Helix
Domain Of Scpa
pdb|4I99|B Chain B, Crystal Structure Of The Smchead Bound To The C-winged Helix
Domain Of Scpa
Length = 354
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 19/151 (12%)
Query: 997 LFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRD 1056
+F F IS + I+ +L+ GG+A L LEN +DPF G++ A P K +
Sbjct: 189 VFXRTFEAISRNFSEIFAKLSP------GGSARLILENPEDPFSGGLEIEAKPAGKDVKR 242
Query: 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRG 1116
+E SGGEK + ALA +F+I +KP+PF++ DE+DA LD+ NV +VA I+ S E
Sbjct: 243 IEAXSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKES--- 299
Query: 1117 NQDADEGNGFQSIVISLKDSFYDKAEALVGV 1147
Q IVI+L+D A+ ++GV
Sbjct: 300 ----------QFIVITLRDVXXANADKIIGV 320
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 15/173 (8%)
Query: 10 IHRLELENFKSYKGLQIIGPFS-DFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQL 67
I +LEL+ FKSY +++ PFS FTAI+G NG+GKSN+ DAI FVLG + + R ++
Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAXRASRI 63
Query: 68 KDLIYAYDDKEKEQKGRRAFVRLVYQLGN--------ESELQFTRTITSSGGSEYRIDGR 119
DLI+A E K + + N E E+ R + G S Y ++GR
Sbjct: 64 SDLIFAGSKNEPPAK----YAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGR 119
Query: 120 VVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDE 172
E L + I N +V QGD+ +P E L++ ISG E
Sbjct: 120 RATRSEILDILTAAXISPDGYN-IVLQGDITKFIKXSPLERRLLIDDISGIAE 171
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 24/207 (11%)
Query: 946 IEKTAP-----NLKALDQYEALLEKERTVTEEFEAARKEEKQAADAYNSVKQKRYGLFME 1000
+EK P NL ++D++E + E+ + ++E+ E + + + ++ F +
Sbjct: 216 LEKKGPGLGTVNLGSIDEFERVNERYKFLSEQKEDLTEAKNTLFQVIEEMDEEMTKRFND 275
Query: 1001 AFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQL 1060
F I S D++++ L GG A L L + +D G++ A PP K+ +++ L
Sbjct: 276 TFVQIRSHFDQVFRSLFG------GGRAELRLTDPNDLLHSGVEIIAQPPGKKLQNLNLL 329
Query: 1061 SGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDA 1120
SGGE+ + A+ALLFSI +P PF +LDEV+AALD NV + A +++ S +
Sbjct: 330 SGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDT------- 382
Query: 1121 DEGNGFQSIVISLKDSFYDKAEALVGV 1147
Q IVI+ + ++A+ L GV
Sbjct: 383 ------QFIVITHRKGTMEEADVLYGV 403
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 14/169 (8%)
Query: 10 IHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLK 68
+ RL++ FKS+ + TA++GPNG+GKSN+ DAI +VLG ++ + LRGG+++
Sbjct: 3 LKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGKME 62
Query: 69 DLIYAYDDKEKEQKGRRAFVRLVYQLGNE--------SELQFTRTITSSGGSEYRIDGRV 120
D+I+A D K R + L N+ E+ TR + SG SE+ I+ +
Sbjct: 63 DIIFAGSDSRK----RLNLAEVTLTLDNDDHFLPIDFHEVSVTRRVYRSGESEFLINNQP 118
Query: 121 VNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISG 169
+ G+ +A + ++ QG VE I S ++ ++ E+ +G
Sbjct: 119 CRLKDIIDLFMDSGLGKEAFS-IISQGKVEEILSSKAEDRRSIFEEAAG 166
>pdb|1XEW|X Chain X, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases.
pdb|1XEX|A Chain A, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 182
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 15/173 (8%)
Query: 10 IHRLELENFKSYKGLQIIGPFS-DFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQL 67
I +LEL+ FKSY +++ PFS FTAI+G NG+GKSN+ DAI FVLG + + +R ++
Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63
Query: 68 KDLIYAYDDKEKEQKGRRAFVRLVYQLGN--------ESELQFTRTITSSGGSEYRIDGR 119
DLI+A E K + + N E E+ R + G S Y ++GR
Sbjct: 64 SDLIFAGSKNEPPAK----YAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGR 119
Query: 120 VVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDE 172
E L + I N +V QGD+ +P E L++ ISG E
Sbjct: 120 RATRSEILDILTAAMISPDGYN-IVLQGDITKFIKMSPLERRLLIDDISGIAE 171
>pdb|3KTA|A Chain A, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
pdb|3KTA|C Chain C, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
Length = 182
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 15/173 (8%)
Query: 10 IHRLELENFKSYKGLQIIGPFS-DFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQL 67
I +LEL+ FKSY +++ PFS FTAI+G NG+GKSN+ DAI FVLG + + R ++
Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAXRASRI 63
Query: 68 KDLIYAYDDKEKEQKGRRAFVRLVYQLGN--------ESELQFTRTITSSGGSEYRIDGR 119
DLI+A E K + + N E E+ R + G S Y ++GR
Sbjct: 64 SDLIFAGSKNEPPAK----YAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGR 119
Query: 120 VVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDE 172
E L + I N +V QGD+ +P E L++ ISG E
Sbjct: 120 RATRSEILDILTAAXISPDGYN-IVLQGDITKFIKXSPLERRLLIDDISGIAE 171
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 7/154 (4%)
Query: 9 KIHRLELENFKSYKGLQIIGPFSD-FTAIIGPNGAGKSNLMDAISFVLGVRT-GQLRGGQ 66
++ +L L+ FKS+ +IG FSD TAI+GPNG+GKSN++DAI +V G ++ +LR +
Sbjct: 2 RLKKLYLKGFKSFGRPSLIG-FSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASE 60
Query: 67 LKDLIYAYDDKEKEQKGRRAFVRLVYQLGNESELQFTRTITSSGGSEYRIDGRVVNWDEY 126
D+I+A E A+V LV++ N E+ R + +G + Y ++G V +
Sbjct: 61 KFDMIFA--GSENLPPAGSAYVELVFE-ENGEEITVARELKRTGENTYYLNGSPVRLKDI 117
Query: 127 NAKLRSLGILVKARNFLVFQGDVESIASKNPKEL 160
+ G+ V + +V QG ++ I + +P+EL
Sbjct: 118 RDRFAGTGLGVDFYS-IVGQGQIDRIVNASPEEL 150
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 1024 LGGTAYLNLENEDDPFL-HGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPS 1082
GG LN+ +E L G + + P +R + + LSGGEK + LALLF++ KPS
Sbjct: 183 FGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPS 242
Query: 1083 PFFILDEVDAALDNLN 1098
PF++LDEVD+ LD+ N
Sbjct: 243 PFYVLDEVDSPLDDYN 258
>pdb|3NWC|A Chain A, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
Hinge Domain
pdb|3NWC|B Chain B, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
Hinge Domain
Length = 189
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 484 EIENQLRELKADRHENERDAKLSQAVETLKRL-FQGVHGRMTDLCRPTQKKYNLAVTVAM 542
E+E+ REL A E +R+ + ++A E LKR G++G + +L + + Y LA+ VA+
Sbjct: 2 ELESSERELIAA--EAQREVRGNRAAEELKRSGIGGIYGTLAELIKVKDEAYALAIEVAL 59
Query: 543 GKFMDAVVVEDENTGKECIK 562
G D VVVEDE ++ IK
Sbjct: 60 GNRADNVVVEDELVAEKAIK 79
>pdb|4AD8|A Chain A, Crystal Structure Of A Deletion Mutant Of Deinococcus
Radiodurans Recn
Length = 517
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 19/116 (16%)
Query: 9 KIHRLELENFKSYKGLQI-IGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQL 67
++ RLE+ N + L++ +G F A G GAGKS ++DA+ +LG R
Sbjct: 39 RLSRLEIRNLATITQLELELG--GGFCAFTGETGAGKSIIVDALGLLLGGRANH------ 90
Query: 68 KDLIYAYDDKEKEQKGRRAFVRLVYQLGNESEL-QFTRTITSSGGSEYRIDGRVVN 122
DLI + EKE V + G+ESE +R ++S+G R+ G VV+
Sbjct: 91 -DLIRS---GEKEL-----LVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVS 137
>pdb|4ABY|A Chain A, Crystal Structure Of Deinococcus Radiodurans Recn Head
Domain
pdb|4ABY|B Chain B, Crystal Structure Of Deinococcus Radiodurans Recn Head
Domain
pdb|4ABY|C Chain C, Crystal Structure Of Deinococcus Radiodurans Recn Head
Domain
pdb|4ABY|D Chain D, Crystal Structure Of Deinococcus Radiodurans Recn Head
Domain
Length = 415
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 19/116 (16%)
Query: 9 KIHRLELENFKSYKGLQI-IGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQL 67
++ RLE+ N + L++ +G F A G GAGKS ++DA+ +LG R
Sbjct: 39 RLSRLEIRNLATITQLELELG--GGFCAFTGETGAGKSIIVDALGLLLGGRANH------ 90
Query: 68 KDLIYAYDDKEKEQKGRRAFVRLVYQLGNESEL-QFTRTITSSGGSEYRIDGRVVN 122
DLI + EKE V + G+ESE +R ++S+G R+ G VV+
Sbjct: 91 -DLIRS---GEKEL-----LVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVS 137
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 12 RLELENFKSYKGLQIIGPF-SDFTAIIGPNGAGKSNLMDAISFVL---GVR 58
RL + NF K + I F S T + GPNGAGKS+L +AISF L G+R
Sbjct: 5 RLTVRNFLGLKNVDI--EFQSGITVVEGPNGAGKSSLFEAISFALFGNGIR 53
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 12 RLELENFKSYKGLQIIGPF-SDFTAIIGPNGAGKSNLMDAISFVL---GVR 58
RL + NF K + I F S T + GPNGAGKS+L +AISF L G+R
Sbjct: 5 RLTVRNFLGLKNVDI--EFQSGITVVEGPNGAGKSSLFEAISFALFGNGIR 53
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND
STATE
Length = 382
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 12 RLELENFKSYKGLQIIGPF-SDFTAIIGPNGAGKSNLMDAISFVL---GVR 58
RL + NF K + I F S T + GPNGAGKS+L +AISF L G+R
Sbjct: 22 RLTVRNFLGLKNVDI--EFQSGITVVEGPNGAGKSSLFEAISFALFGNGIR 70
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 18 FKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAIS 52
FK+ G+ I D T IIGPNG+GKS L++ I+
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT 54
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 18 FKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQL 62
FK+ G+ I D T IIGPNG+GKS L++ I+ L G++
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 18 FKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQL 62
FK+ G+ I D T IIGPNG+GKS L++ I+ L G++
Sbjct: 20 FKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 26 IIGPFSDFTAII-GPNGAGKSNLMDAISFVLGVRTGQL 62
II F D T + G +G GKS+L++AIS LG+RT ++
Sbjct: 167 IIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 204
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 9 KIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAI 51
K+ R+ ++NF+S+ ++ IIG NG+GKS+L+DAI
Sbjct: 2 KLERVTVKNFRSHSD-TVVEFKEGINLIIGQNGSGKSSLLDAI 43
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 9 KIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAI 51
K+ R+ ++NF+S+ ++ IIG NG+GKS+L+DAI
Sbjct: 2 KLERVTVKNFRSHSD-TVVEFKEGINLIIGQNGSGKSSLLDAI 43
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 9 KIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAI 51
K+ R+ ++NF+S+ ++ IIG NG+GKS+L+DAI
Sbjct: 2 KLERVTVKNFRSHSD-TVVEFKEGINLIIGQNGSGKSSLLDAI 43
>pdb|1GXL|A Chain A, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|B Chain B, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|C Chain C, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|D Chain D, Smc Hinge Domain From T. Maritima With Coiled Coil
Length = 213
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 486 ENQLRELKADRHENERDAK----LSQAVETL---KRLFQGVHGRMTDLCRPTQKKYNLAV 538
E +LRE++ ++ ERD + S+AV + K F G+ +++L +KY+LAV
Sbjct: 4 EKRLREIQFEKEMIERDMREYRGFSRAVRAVFEEKERFPGLVDVVSNLI-EVDEKYSLAV 62
Query: 539 TVAMGKFMDAVVVEDENTGKECI 561
+V +G +VV + +T K +
Sbjct: 63 SVLLGGTAQNIVVRNVDTAKAIV 85
>pdb|3QKR|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 203
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 9 KIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAI 51
K+ R+ ++NF+S+ ++ IIG NG+GKS+L+DAI
Sbjct: 2 KLERVTVKNFRSHSD-TVVEFKEGINLIIGQNGSGKSSLLDAI 43
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 39/214 (18%)
Query: 647 REMQLRESETSGKISGLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLK 706
+++QL + GKI +E I +ED+ L +E++ ++E + + +L + +
Sbjct: 972 QKLQLEKVTADGKIKKMEDDILI-------MEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024
Query: 707 DKIDRRTTDINKLERRINEITDRLYRDFSESVGVANIREYEENQLKAAQNVAEERLNLSN 766
+K T NK E I+E+ RL ++ + I+ E + + ++ E+ L
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE---SSDLHEQIAELQA 1081
Query: 767 QLAKLKYQL----------------EYEQKRDVESRIKKLESSLSTLENDLK-------Q 803
Q+A+LK QL E QK + +I++LES +S L+ DL+ +
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141
Query: 804 VKKKEGDVKSATETA------TGDITRWKEEMRG 831
+K++ D+ E T D T ++E+RG
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
Length = 250
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 22 KGLQIIGPFSDFTAIIGPNGAGKSNL 47
KG+ ++ P + A++GPNGAGKS L
Sbjct: 20 KGVNLVVPKGEVHALMGPNGAGKSTL 45
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 13 LELENFKSYKGLQIIGPF-SDFTAIIGPNGAGKSNLMDAISFVL 55
+ + NFKS+ +I F AIIG NG+GKS++ +A+ F L
Sbjct: 8 IRMNNFKSHVNSRI--KFEKGIVAIIGENGSGKSSIFEAVFFAL 49
>pdb|1O6A|A Chain A, Crystal Structure Of A C-Terminal Fragment Of The Putative
Flagellar Motor Switch Protein Flin (Tm0680) From
Thermotoga Maritima At 1.85 A Resolution
pdb|1O6A|B Chain B, Crystal Structure Of A C-Terminal Fragment Of The Putative
Flagellar Motor Switch Protein Flin (Tm0680) From
Thermotoga Maritima At 1.85 A Resolution
Length = 96
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 491 ELKADRHENERDAKLSQAVE------TLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGK 544
E+ +D+ E D L VE TLKR+ + +HG + +L + T + ++ V GK
Sbjct: 7 EVPSDKLELLLDIPLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVN---GK 63
Query: 545 FM--DAVVVEDENTG 557
+ VVV DEN G
Sbjct: 64 LIARGEVVVIDENFG 78
>pdb|1F2T|A Chain A, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
Length = 149
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 9 KIHRLELENFKSYKGLQIIGPFSD-FTAIIGPNGAGKSNLMDAI 51
K+ R+ ++NF+S+ + F + IIG NG+GKS+L+DAI
Sbjct: 2 KLERVTVKNFRSHS--DTVVEFKEGINLIIGQNGSGKSSLLDAI 43
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 35 AIIGPNGAGKSNLMDAISFVLGVRTGQL 62
A+IGPNGAGKS L++ ++ L +G++
Sbjct: 697 AVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 35 AIIGPNGAGKSNLMDAISFVLGVRTGQL 62
A+IGPNGAGKS L++ ++ L +G++
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|1US8|A Chain A, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 147
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 9 KIHRLELENFKSYKGLQIIGPFSD-FTAIIGPNGAGKSNLMDAI 51
K+ R+ ++NF+S+ + F + IIG NG+GKS+L+DAI
Sbjct: 2 KLERVTVKNFRSHS--DTVVEFKEGINLIIGQNGSGKSSLLDAI 43
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1055 RDMEQLSGGE--KTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCE 1112
R++ QLSGGE + A ALL H F+ DE + LD KVA IR + E
Sbjct: 224 RELHQLSGGELQRVAIAAALLRKAH------FYFFDEPSSYLDIRQRLKVARVIRRLANE 277
Query: 1113 G 1113
G
Sbjct: 278 G 278
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 35 AIIGPNGAGKSNLMDAISFVLGVRTGQL 62
A+IGPNGAGKS L++ ++ L +G++
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 1055 RDMEQLSGGE--KTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCE 1112
R++ QLSGGE + A ALL H F+ DE + LD KVA IR + E
Sbjct: 210 RELHQLSGGELQRVAIAAALLRKAH------FYFFDEPSSYLDIRQRLKVARVIRRLANE 263
Query: 1113 G 1113
G
Sbjct: 264 G 264
>pdb|3L51|B Chain B, Crystal Structure Of The Mouse Condensin Hinge Domain
Length = 166
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 53/131 (40%)
Query: 518 GVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECI---------------- 561
G++GR+ DL +KY++A++ + +D +VV+ +T +EC+
Sbjct: 18 GIYGRLGDL-GAIDEKYDIAIS-SCCHALDYIVVDSIDTAQECVNFLKKHNIGIATFIGL 75
Query: 562 ----------------------------------KAVLFAVGNTLVCDGLDEAKVLSWSG 587
+A FA+ +TLV + LD+A +++
Sbjct: 76 DKXTVWAKKXSKIQTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQR 135
Query: 588 E-RFRVVTVDG 597
+ R+RVVT+ G
Sbjct: 136 DRRWRVVTLQG 146
>pdb|2O5V|A Chain A, Recombination Mediator Recf
Length = 359
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 34 TAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAFVRLVYQ 93
T I G NGAGK+NL++A L TGQ +++ LI A + + A+VR Q
Sbjct: 29 TGIYGENGAGKTNLLEAAYLAL---TGQTDAPRIEQLIQAGETE--------AYVRADLQ 77
Query: 94 LGNESELQFTRTITSSGGSEYRIDG 118
G +Q G + ++DG
Sbjct: 78 QGGSLSIQ--EVGLGRGRRQLKVDG 100
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 31 SDFTAIIGPNGAGKSNLMDAISFVLGVRTGQL 62
+F A++GP+G+GKS L+ I+ + +G++
Sbjct: 29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
>pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|E Chain E, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|O Chain O, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|R Chain R, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 408
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 694 EIGRIKPDLQKLKDKIDRRTTDINKLERRINEITDRLYRDFSESVG----VANIREYEEN 749
++G + P KL+D + R+ I K + D + R S + + N+ + +N
Sbjct: 18 DLGVLCPTGCKLQDTLVRQERPIRKSIEDLRNTVDSVSRTSSSTFQYITLLKNMWKGRQN 77
Query: 750 QLKAAQNVAEERLNLSNQLAKLKYQLEYEQKRDVESRIKKLESSLSTLENDLKQVKKKEG 809
Q++ +NV E S+ L K + ++ K ++ ++++ L S LEN +++K E
Sbjct: 78 QVQDNENVVNE---YSSHLEKHQLYIDETVKNNIPTKLRVLRS---ILENLRSKIQKLES 131
Query: 810 DVKSATE 816
DV + E
Sbjct: 132 DVSTQME 138
>pdb|2YNZ|A Chain A, Salmonella Enterica Sada 823-947 Fused To A Gcn4 Adaptor
(Sadak5)
pdb|2YNZ|B Chain B, Salmonella Enterica Sada 823-947 Fused To A Gcn4 Adaptor
(Sadak5)
pdb|2YNZ|C Chain C, Salmonella Enterica Sada 823-947 Fused To A Gcn4 Adaptor
(Sadak5)
Length = 154
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 675 RSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKIDRRTTDINKLERRINEI-TDRLYRD 733
+ IEDK+ + + I+ EI RIK + + K+D+ T+ I + I + TD L D
Sbjct: 2 KQIEDKIEEILSKIYHIENEIARIKKLIYETNQKVDQNTSAIADINTSITNLGTDALSWD 61
Query: 734 -----FSESVGVA 741
FS S G +
Sbjct: 62 DEEGAFSASHGTS 74
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 32 DFTAIIGPNGAGKSNLMDAISFVLGVRTGQ 61
+ AIIGPNGAGKS L+ ++ L G+
Sbjct: 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGE 67
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 34 TAIIGPNGAGKSNLMDAISFVL 55
I+GPNG+GK+ L+ AIS +L
Sbjct: 33 VIILGPNGSGKTTLLRAISGLL 54
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 639 ELEEL-GSIREMQLRESETSGKISGLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGR 697
E+E+L + E++L++ E I+ LEK I A ++E T+ E +
Sbjct: 2015 EVEQLENAANELKLKQDEIVATITALEKSI--------------ATYKEEYATLIRETEQ 2060
Query: 698 IKPDLQKLKDKIDRRTTDINKL 719
IK + K+K+K+DR ++ L
Sbjct: 2061 IKTESSKVKNKVDRSIALLDNL 2082
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,491,026
Number of Sequences: 62578
Number of extensions: 1227137
Number of successful extensions: 4693
Number of sequences better than 100.0: 181
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 4214
Number of HSP's gapped (non-prelim): 514
length of query: 1154
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1045
effective length of database: 8,152,335
effective search space: 8519190075
effective search space used: 8519190075
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)