Query 036401
Match_columns 1154
No_of_seqs 435 out of 3123
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 12:18:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0018 Structural maintenance 100.0 1E-133 2E-138 1133.7 117.8 1076 7-1152 1-1129(1141)
2 COG1196 Smc Chromosome segrega 100.0 2E-120 5E-125 1156.8 137.0 1076 8-1153 1-1148(1163)
3 KOG0996 Structural maintenance 100.0 2E-114 4E-119 983.6 119.7 1086 8-1153 84-1276(1293)
4 KOG0933 Structural maintenance 100.0 1E-101 3E-106 862.8 110.2 1058 8-1153 1-1163(1174)
5 TIGR02169 SMC_prok_A chromosom 100.0 3.8E-96 8E-101 971.5 139.9 1085 9-1153 1-1156(1164)
6 KOG0964 Structural maintenance 100.0 4.6E-96 1E-100 813.5 109.6 1075 8-1151 1-1176(1200)
7 TIGR02168 SMC_prok_B chromosom 100.0 2.4E-82 5.1E-87 844.0 131.7 1072 9-1153 1-1171(1179)
8 KOG0250 DNA repair protein RAD 100.0 6.1E-73 1.3E-77 648.7 99.3 936 6-1142 38-1062(1074)
9 KOG0979 Structural maintenance 100.0 3.8E-55 8.3E-60 494.0 94.5 266 6-281 18-287 (1072)
10 PRK02224 chromosome segregatio 100.0 1.7E-49 3.7E-54 503.4 110.0 157 8-176 1-167 (880)
11 PRK03918 chromosome segregatio 100.0 4.6E-46 1E-50 474.0 114.9 167 8-186 1-173 (880)
12 TIGR00606 rad50 rad50. This fa 100.0 2.1E-45 4.6E-50 475.3 108.2 196 9-217 2-221 (1311)
13 PRK01156 chromosome segregatio 100.0 6.9E-44 1.5E-48 451.0 108.7 169 8-189 1-180 (895)
14 COG0419 SbcC ATPase involved i 100.0 2.5E-41 5.4E-46 423.3 109.9 173 8-189 1-185 (908)
15 PRK10246 exonuclease subunit S 100.0 1.6E-34 3.5E-39 363.7 113.5 182 8-198 1-207 (1047)
16 TIGR00618 sbcc exonuclease Sbc 100.0 1.3E-33 2.9E-38 359.4 117.1 178 8-192 1-197 (1042)
17 PRK04863 mukB cell division pr 100.0 1.2E-33 2.6E-38 354.8 110.5 350 4-362 1-478 (1486)
18 KOG0962 DNA repair protein RAD 100.0 1.8E-27 4E-32 282.0 104.7 172 7-183 1-193 (1294)
19 TIGR02680 conserved hypothetic 100.0 1.8E-26 3.9E-31 296.0 107.8 86 9-96 3-96 (1353)
20 PF02463 SMC_N: RecF/RecN/SMC 100.0 1.6E-30 3.6E-35 272.9 23.2 126 9-137 1-134 (220)
21 TIGR02168 SMC_prok_B chromosom 100.0 4.2E-23 9.1E-28 275.6 96.3 83 935-1017 970-1053(1179)
22 PHA02562 46 endonuclease subun 100.0 7.3E-26 1.6E-30 273.8 47.4 186 7-205 1-197 (562)
23 TIGR00634 recN DNA repair prot 100.0 2.9E-25 6.3E-30 263.0 38.4 183 9-216 1-202 (563)
24 PRK10869 recombination and rep 99.9 8.8E-25 1.9E-29 255.1 38.4 183 9-216 1-198 (553)
25 TIGR02169 SMC_prok_A chromosom 99.9 1.5E-18 3.2E-23 230.9 100.1 394 179-585 167-566 (1164)
26 PF13514 AAA_27: AAA domain 99.9 2.5E-17 5.5E-22 211.7 99.2 163 960-1146 936-1103(1111)
27 COG1196 Smc Chromosome segrega 99.9 6E-17 1.3E-21 208.4 98.2 176 397-585 377-560 (1163)
28 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.8E-24 6E-29 228.2 16.6 157 10-169 1-158 (247)
29 PF12128 DUF3584: Protein of u 99.9 9E-14 1.9E-18 179.2 106.7 70 1060-1145 1121-1197(1201)
30 cd03273 ABC_SMC2_euk Eukaryoti 99.9 8.6E-23 1.9E-27 217.9 16.1 145 8-156 1-157 (251)
31 COG4717 Uncharacterized conser 99.9 1.6E-12 3.4E-17 147.4 93.7 172 935-1139 793-971 (984)
32 COG0497 RecN ATPase involved i 99.9 1.8E-19 3.9E-24 200.5 36.7 183 10-217 2-199 (557)
33 TIGR03185 DNA_S_dndD DNA sulfu 99.9 9.3E-18 2E-22 203.1 53.9 160 8-173 1-184 (650)
34 KOG0996 Structural maintenance 99.9 7.3E-13 1.6E-17 154.6 87.5 340 231-585 316-660 (1293)
35 KOG0964 Structural maintenance 99.9 3.3E-12 7.2E-17 145.7 86.6 42 538-584 521-565 (1200)
36 KOG0018 Structural maintenance 99.8 1.1E-12 2.5E-17 151.9 80.6 590 237-865 229-894 (1141)
37 cd03242 ABC_RecF RecF is a rec 99.8 4.4E-20 9.6E-25 198.5 17.6 154 10-187 1-155 (270)
38 cd03241 ABC_RecN RecN ATPase i 99.8 1.9E-20 4.1E-25 202.1 14.0 132 10-166 1-147 (276)
39 KOG0933 Structural maintenance 99.8 1.7E-11 3.7E-16 140.8 82.9 101 523-645 604-705 (1174)
40 COG4913 Uncharacterized protei 99.8 4.6E-11 9.9E-16 132.0 86.1 107 8-115 15-144 (1104)
41 PRK10869 recombination and rep 99.8 3.6E-17 7.9E-22 191.4 39.0 199 935-1151 301-509 (553)
42 PRK00064 recF recombination pr 99.8 6.8E-19 1.5E-23 196.3 22.3 155 8-186 1-156 (361)
43 PHA02562 46 endonuclease subun 99.8 7.5E-16 1.6E-20 186.7 47.6 89 1050-1152 459-554 (562)
44 TIGR00634 recN DNA repair prot 99.8 1.7E-16 3.7E-21 188.5 38.8 199 935-1151 306-519 (563)
45 PRK14079 recF recombination pr 99.8 2E-18 4.2E-23 191.4 19.2 150 8-183 1-150 (349)
46 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1E-18 2.2E-23 186.7 14.9 143 10-157 1-150 (243)
47 TIGR03185 DNA_S_dndD DNA sulfu 99.7 5.8E-13 1.3E-17 161.6 51.0 124 990-1139 492-618 (650)
48 COG0497 RecN ATPase involved i 99.7 8.1E-14 1.8E-18 155.8 39.2 199 935-1151 302-510 (557)
49 KOG0250 DNA repair protein RAD 99.7 1E-09 2.3E-14 129.3 73.2 99 397-495 352-451 (1074)
50 COG1126 GlnQ ABC-type polar am 99.7 1.5E-17 3.2E-22 159.5 6.9 87 1049-1153 126-213 (240)
51 cd03239 ABC_SMC_head The struc 99.7 7.3E-17 1.6E-21 160.5 10.2 78 10-95 1-82 (178)
52 cd03277 ABC_SMC5_euk Eukaryoti 99.7 9.1E-17 2E-21 165.0 11.0 109 8-161 1-110 (213)
53 TIGR00611 recf recF protein. A 99.7 1.4E-15 3E-20 169.1 19.3 140 8-170 1-144 (365)
54 KOG0161 Myosin class II heavy 99.7 6.3E-08 1.4E-12 124.1 96.4 99 386-484 1045-1143(1930)
55 COG1195 RecF Recombinational D 99.6 1.3E-14 2.9E-19 154.7 19.0 141 8-170 1-142 (363)
56 KOG0161 Myosin class II heavy 99.6 2.2E-07 4.8E-12 119.2 98.2 19 146-164 758-776 (1930)
57 COG1124 DppF ABC-type dipeptid 99.6 5.6E-16 1.2E-20 152.5 5.6 93 1044-1153 126-219 (252)
58 COG1136 SalX ABC-type antimicr 99.6 1.3E-15 2.8E-20 152.3 8.0 82 1055-1153 138-219 (226)
59 PRK02224 chromosome segregatio 99.6 2.2E-07 4.8E-12 119.1 85.1 171 956-1152 690-871 (880)
60 PRK04863 mukB cell division pr 99.6 3.5E-07 7.6E-12 117.6 89.8 57 516-574 682-738 (1486)
61 COG1125 OpuBA ABC-type proline 99.6 1.3E-16 2.7E-21 156.3 0.5 134 1002-1153 77-213 (309)
62 COG1127 Ttg2A ABC-type transpo 99.6 2.9E-16 6.3E-21 153.4 0.7 125 1009-1148 93-220 (263)
63 TIGR00606 rad50 rad50. This fa 99.6 9.4E-07 2E-11 116.5 94.6 191 935-1152 1080-1293(1311)
64 COG3840 ThiQ ABC-type thiamine 99.5 1.7E-15 3.6E-20 140.3 2.5 126 1011-1153 81-207 (231)
65 COG1116 TauB ABC-type nitrate/ 99.5 1.8E-14 4E-19 143.7 8.0 87 1051-1152 122-209 (248)
66 cd03278 ABC_SMC_barmotin Barmo 99.5 4E-14 8.6E-19 143.9 9.7 88 1051-1151 105-192 (197)
67 COG1122 CbiO ABC-type cobalt t 99.5 1.4E-14 3E-19 148.8 6.3 84 1053-1153 132-216 (235)
68 COG1135 AbcC ABC-type metal io 99.5 1.7E-14 3.7E-19 146.5 6.8 88 1049-1153 131-219 (339)
69 cd03273 ABC_SMC2_euk Eukaryoti 99.5 4.8E-14 1E-18 150.7 9.2 87 1054-1153 161-247 (251)
70 cd03275 ABC_SMC1_euk Eukaryoti 99.5 5.7E-14 1.2E-18 149.4 9.0 91 1049-1151 145-235 (247)
71 COG1118 CysA ABC-type sulfate/ 99.5 1.8E-14 3.9E-19 145.9 4.8 124 1012-1153 88-215 (345)
72 COG4181 Predicted ABC-type tra 99.5 7.2E-14 1.6E-18 128.0 7.6 87 1051-1154 138-224 (228)
73 cd03274 ABC_SMC4_euk Eukaryoti 99.5 1E-13 2.2E-18 142.6 9.2 117 8-156 1-118 (212)
74 COG4175 ProV ABC-type proline/ 99.5 2.3E-14 4.9E-19 145.1 3.9 130 1005-1153 111-242 (386)
75 PF13555 AAA_29: P-loop contai 99.5 1E-13 2.2E-18 107.0 6.1 49 10-59 1-51 (62)
76 COG0444 DppD ABC-type dipeptid 99.4 1E-13 2.2E-18 143.7 6.6 83 1054-1153 148-231 (316)
77 cd03240 ABC_Rad50 The catalyti 99.4 3.8E-13 8.2E-18 137.7 10.6 89 10-106 1-91 (204)
78 COG1117 PstB ABC-type phosphat 99.4 7.8E-14 1.7E-18 133.4 4.8 78 1050-1144 140-218 (253)
79 cd03239 ABC_SMC_head The struc 99.4 6.5E-13 1.4E-17 132.2 11.3 81 1060-1152 95-175 (178)
80 cd03276 ABC_SMC6_euk Eukaryoti 99.4 2.7E-13 5.9E-18 137.9 8.7 78 10-96 1-79 (198)
81 cd03274 ABC_SMC4_euk Eukaryoti 99.4 4.2E-13 9.2E-18 138.0 10.2 90 1050-1152 118-207 (212)
82 cd03279 ABC_sbcCD SbcCD and ot 99.4 5.6E-13 1.2E-17 138.3 9.2 90 8-106 1-95 (213)
83 COG4598 HisP ABC-type histidin 99.4 4.4E-13 9.4E-18 123.7 7.0 85 1051-1153 144-229 (256)
84 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 4.9E-13 1.1E-17 136.0 7.6 83 1051-1149 131-214 (254)
85 COG4161 ArtP ABC-type arginine 99.4 6.6E-13 1.4E-17 120.0 7.4 83 1053-1153 135-218 (242)
86 COG1120 FepC ABC-type cobalami 99.4 7.2E-13 1.6E-17 135.7 8.0 84 1053-1153 132-216 (258)
87 COG1123 ATPase components of v 99.4 3.6E-13 7.9E-18 150.8 6.1 84 1053-1153 423-507 (539)
88 COG2884 FtsE Predicted ATPase 99.4 7.5E-13 1.6E-17 124.2 7.2 87 1049-1153 127-214 (223)
89 TIGR00960 3a0501s02 Type II (G 99.4 8.1E-13 1.8E-17 138.2 8.4 81 1055-1153 134-215 (216)
90 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 7.8E-13 1.7E-17 138.7 7.6 82 1055-1153 136-217 (218)
91 cd03225 ABC_cobalt_CbiO_domain 99.4 1.2E-12 2.7E-17 136.4 8.3 81 1055-1153 130-211 (211)
92 PF13476 AAA_23: AAA domain; P 99.4 1E-12 2.2E-17 136.9 7.4 49 12-61 1-49 (202)
93 cd03278 ABC_SMC_barmotin Barmo 99.4 1.5E-12 3.3E-17 132.3 8.5 86 10-97 1-87 (197)
94 TIGR02673 FtsE cell division A 99.3 1.5E-12 3.2E-17 136.1 8.1 81 1055-1153 133-214 (214)
95 TIGR02314 ABC_MetN D-methionin 99.3 1.3E-12 2.8E-17 143.8 7.6 82 1055-1153 136-218 (343)
96 cd03226 ABC_cobalt_CbiO_domain 99.3 1.8E-12 4E-17 134.2 8.0 81 1055-1153 122-203 (205)
97 TIGR02211 LolD_lipo_ex lipopro 99.3 1.5E-12 3.2E-17 136.9 7.4 82 1055-1153 137-218 (221)
98 PRK13651 cobalt transporter AT 99.3 1.4E-12 3.1E-17 142.2 7.3 82 1054-1153 160-242 (305)
99 cd03246 ABCC_Protease_Secretio 99.3 2.5E-12 5.4E-17 128.8 8.4 76 1060-1153 97-172 (173)
100 cd03235 ABC_Metallic_Cations A 99.3 2.3E-12 5.1E-17 134.4 8.3 77 1055-1147 128-205 (213)
101 cd03259 ABC_Carb_Solutes_like 99.3 1.7E-12 3.7E-17 135.5 7.0 82 1055-1153 126-208 (213)
102 COG4172 ABC-type uncharacteriz 99.3 1.6E-12 3.5E-17 135.9 6.5 89 1048-1153 415-504 (534)
103 COG1123 ATPase components of v 99.3 1.9E-12 4.1E-17 145.2 7.5 82 1055-1153 150-232 (539)
104 cd03261 ABC_Org_Solvent_Resist 99.3 2.1E-12 4.5E-17 137.1 7.5 82 1055-1153 132-214 (235)
105 cd03214 ABC_Iron-Siderophores_ 99.3 2.9E-12 6.3E-17 129.3 7.7 81 1055-1153 93-175 (180)
106 PRK15079 oligopeptide ABC tran 99.3 1.8E-12 3.8E-17 142.9 6.6 83 1054-1153 156-239 (331)
107 PRK13643 cbiO cobalt transport 99.3 2.6E-12 5.7E-17 139.8 7.7 81 1055-1153 140-221 (288)
108 COG4525 TauB ABC-type taurine 99.3 2.7E-12 5.9E-17 120.6 6.5 85 1054-1153 127-212 (259)
109 cd03268 ABC_BcrA_bacitracin_re 99.3 2.3E-12 5E-17 133.9 6.9 81 1055-1153 122-203 (208)
110 cd03292 ABC_FtsE_transporter F 99.3 3.6E-12 7.8E-17 133.4 8.3 81 1055-1153 132-213 (214)
111 TIGR01184 ntrCD nitrate transp 99.3 3E-12 6.6E-17 134.8 7.7 82 1055-1153 110-192 (230)
112 cd03293 ABC_NrtD_SsuB_transpor 99.3 3.3E-12 7.2E-17 133.9 7.9 77 1055-1146 127-204 (220)
113 COG1137 YhbG ABC-type (unclass 99.3 3.6E-12 7.9E-17 120.6 7.1 77 1056-1148 136-213 (243)
114 PRK11308 dppF dipeptide transp 99.3 2.3E-12 5.1E-17 141.9 6.8 82 1055-1153 150-232 (327)
115 PRK11022 dppD dipeptide transp 99.3 3.3E-12 7.2E-17 140.8 8.0 82 1055-1153 149-231 (326)
116 TIGR01188 drrA daunorubicin re 99.3 2.9E-12 6.3E-17 140.7 7.5 81 1055-1153 120-201 (302)
117 PRK13537 nodulation ABC transp 99.3 3.4E-12 7.3E-17 139.7 7.7 81 1055-1153 134-215 (306)
118 cd03256 ABC_PhnC_transporter A 99.3 3.3E-12 7.3E-17 136.4 7.5 82 1055-1153 140-222 (241)
119 cd03245 ABCC_bacteriocin_expor 99.3 5.4E-12 1.2E-16 132.6 8.9 79 1056-1153 137-215 (220)
120 cd03238 ABC_UvrA The excision 99.3 7E-12 1.5E-16 123.7 9.1 85 1054-1152 82-166 (176)
121 cd03229 ABC_Class3 This class 99.3 4.4E-12 9.6E-17 127.7 7.9 76 1060-1153 101-178 (178)
122 cd03230 ABC_DR_subfamily_A Thi 99.3 4.6E-12 9.9E-17 126.9 7.9 76 1060-1153 96-172 (173)
123 COG4608 AppF ABC-type oligopep 99.3 2.4E-12 5.2E-17 130.6 5.8 85 1052-1153 102-187 (268)
124 TIGR01186 proV glycine betaine 99.3 3.8E-12 8.2E-17 140.9 7.9 82 1055-1153 125-207 (363)
125 TIGR03258 PhnT 2-aminoethylpho 99.3 3.8E-12 8.3E-17 141.5 7.9 83 1054-1153 132-216 (362)
126 PRK13634 cbiO cobalt transport 99.3 3.2E-12 7E-17 139.2 7.2 82 1055-1153 141-223 (290)
127 PRK11650 ugpC glycerol-3-phosp 99.3 3.4E-12 7.4E-17 142.0 7.5 82 1055-1153 130-212 (356)
128 cd03262 ABC_HisP_GlnQ_permease 99.3 5E-12 1.1E-16 132.2 8.2 81 1055-1153 131-212 (213)
129 PRK13631 cbiO cobalt transport 99.3 3.5E-12 7.6E-17 140.0 7.4 82 1054-1153 171-253 (320)
130 PRK13536 nodulation factor exp 99.3 4E-12 8.7E-17 140.4 7.9 82 1054-1153 167-249 (340)
131 COG1131 CcmA ABC-type multidru 99.3 3.1E-12 6.8E-17 138.3 6.8 82 1054-1153 131-214 (293)
132 cd03237 ABC_RNaseL_inhibitor_d 99.3 5E-12 1.1E-16 133.6 8.2 80 1055-1149 111-191 (246)
133 cd03248 ABCC_TAP TAP, the Tran 99.3 6.9E-12 1.5E-16 132.2 9.2 80 1055-1153 146-225 (226)
134 TIGR01288 nodI ATP-binding ABC 99.3 3.5E-12 7.5E-17 140.2 7.1 81 1055-1153 131-212 (303)
135 COG4148 ModC ABC-type molybdat 99.3 1E-12 2.3E-17 130.7 2.6 119 1012-1153 87-206 (352)
136 cd03266 ABC_NatA_sodium_export 99.3 4.1E-12 8.8E-17 133.3 7.3 81 1055-1153 132-213 (218)
137 cd03269 ABC_putative_ATPase Th 99.3 3.9E-12 8.5E-17 132.4 7.1 81 1055-1153 124-205 (210)
138 cd03219 ABC_Mj1267_LivG_branch 99.3 4.5E-12 9.8E-17 134.8 7.7 81 1055-1153 139-220 (236)
139 PRK10908 cell division protein 99.3 5E-12 1.1E-16 132.8 7.9 81 1055-1153 133-214 (222)
140 cd03260 ABC_PstB_phosphate_tra 99.3 5.5E-12 1.2E-16 133.1 8.3 78 1057-1153 139-217 (227)
141 cd03218 ABC_YhbG The ABC trans 99.3 4.9E-12 1.1E-16 134.1 7.8 81 1055-1153 129-210 (232)
142 cd03216 ABC_Carb_Monos_I This 99.3 5.9E-12 1.3E-16 124.3 7.9 77 1059-1153 82-159 (163)
143 cd03257 ABC_NikE_OppD_transpor 99.3 4.3E-12 9.4E-17 134.3 7.4 82 1055-1153 141-223 (228)
144 cd03264 ABC_drug_resistance_li 99.3 5.1E-12 1.1E-16 131.7 7.8 80 1055-1153 126-206 (211)
145 COG3842 PotA ABC-type spermidi 99.3 2.6E-12 5.6E-17 138.0 5.6 87 1050-1153 127-214 (352)
146 PRK13637 cbiO cobalt transport 99.3 4.6E-12 1E-16 137.8 7.7 82 1055-1153 140-222 (287)
147 TIGR03864 PQQ_ABC_ATP ABC tran 99.3 5.1E-12 1.1E-16 134.0 7.7 82 1055-1153 128-209 (236)
148 cd03272 ABC_SMC3_euk Eukaryoti 99.3 9.5E-12 2.1E-16 133.0 9.9 86 1054-1152 153-238 (243)
149 PRK10247 putative ABC transpor 99.3 5.8E-12 1.2E-16 132.3 8.0 84 1055-1153 133-216 (225)
150 cd03224 ABC_TM1139_LivF_branch 99.3 5.3E-12 1.2E-16 132.9 7.8 81 1055-1153 128-209 (222)
151 PRK15093 antimicrobial peptide 99.3 4.7E-12 1E-16 140.3 7.6 82 1055-1153 154-236 (330)
152 PRK10584 putative ABC transpor 99.3 4.9E-12 1.1E-16 133.6 7.4 82 1055-1153 142-223 (228)
153 PRK11629 lolD lipoprotein tran 99.3 5.3E-12 1.2E-16 133.6 7.7 82 1055-1153 141-222 (233)
154 PRK09452 potA putrescine/sperm 99.3 5E-12 1.1E-16 141.0 7.7 82 1055-1153 140-222 (375)
155 cd03265 ABC_DrrA DrrA is the A 99.3 5.5E-12 1.2E-16 132.3 7.5 82 1055-1153 127-209 (220)
156 cd03252 ABCC_Hemolysin The ABC 99.3 7.9E-12 1.7E-16 132.9 8.8 80 1055-1153 134-213 (237)
157 PRK11153 metN DL-methionine tr 99.3 4.8E-12 1E-16 140.8 7.4 82 1055-1153 136-218 (343)
158 cd03297 ABC_ModC_molybdenum_tr 99.3 5.4E-12 1.2E-16 131.7 7.4 82 1055-1153 127-209 (214)
159 cd03270 ABC_UvrA_I The excisio 99.3 7.9E-12 1.7E-16 130.7 8.5 78 1055-1147 133-211 (226)
160 cd03223 ABCD_peroxisomal_ALDP 99.3 1E-11 2.3E-16 123.0 9.0 73 1056-1147 88-160 (166)
161 cd03247 ABCC_cytochrome_bd The 99.3 8.9E-12 1.9E-16 125.6 8.6 78 1057-1153 96-173 (178)
162 TIGR01978 sufC FeS assembly AT 99.3 5.9E-12 1.3E-16 134.6 7.7 80 1056-1153 140-222 (243)
163 PRK09473 oppD oligopeptide tra 99.3 5.5E-12 1.2E-16 139.1 7.6 82 1055-1153 157-239 (330)
164 PRK13645 cbiO cobalt transport 99.3 4.9E-12 1.1E-16 138.2 7.0 82 1055-1153 146-228 (289)
165 cd03296 ABC_CysA_sulfate_impor 99.3 5.5E-12 1.2E-16 134.1 7.2 82 1055-1153 132-214 (239)
166 PRK11614 livF leucine/isoleuci 99.3 6.4E-12 1.4E-16 133.5 7.7 80 1056-1153 134-214 (237)
167 TIGR02315 ABC_phnC phosphonate 99.3 5.7E-12 1.2E-16 134.7 7.3 82 1055-1153 141-223 (243)
168 PRK11248 tauB taurine transpor 99.3 7.1E-12 1.5E-16 133.9 8.1 79 1055-1148 124-203 (255)
169 PRK13647 cbiO cobalt transport 99.3 6.8E-12 1.5E-16 135.6 8.0 81 1055-1153 134-215 (274)
170 PRK11247 ssuB aliphatic sulfon 99.3 6.5E-12 1.4E-16 133.7 7.7 78 1055-1147 129-207 (257)
171 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 8.8E-12 1.9E-16 132.6 8.7 80 1055-1153 135-214 (238)
172 cd03298 ABC_ThiQ_thiamine_tran 99.3 6.4E-12 1.4E-16 130.9 7.5 82 1055-1153 124-206 (211)
173 PRK11432 fbpC ferric transport 99.3 6.1E-12 1.3E-16 139.4 7.6 82 1055-1153 132-214 (351)
174 PRK13650 cbiO cobalt transport 99.3 6.8E-12 1.5E-16 136.0 7.8 82 1055-1153 136-217 (279)
175 PRK11264 putative amino-acid A 99.3 7.5E-12 1.6E-16 134.3 8.1 81 1055-1153 140-221 (250)
176 PRK13641 cbiO cobalt transport 99.3 8.1E-12 1.7E-16 136.1 8.3 81 1055-1153 141-222 (287)
177 cd03215 ABC_Carb_Monos_II This 99.3 8.4E-12 1.8E-16 126.2 7.9 76 1060-1153 105-181 (182)
178 PRK09580 sufC cysteine desulfu 99.3 7.4E-12 1.6E-16 134.3 7.9 77 1059-1153 145-223 (248)
179 PRK13638 cbiO cobalt transport 99.3 8E-12 1.7E-16 135.3 8.1 81 1055-1153 132-213 (271)
180 PRK10851 sulfate/thiosulfate t 99.3 6.6E-12 1.4E-16 139.5 7.5 83 1054-1153 131-214 (353)
181 PRK10619 histidine/lysine/argi 99.3 8.7E-12 1.9E-16 134.1 8.2 81 1055-1153 148-229 (257)
182 cd03228 ABCC_MRP_Like The MRP 99.3 1.3E-11 2.8E-16 123.4 8.8 75 1060-1153 97-171 (171)
183 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 8.5E-12 1.8E-16 130.6 7.8 81 1055-1153 138-219 (224)
184 TIGR02324 CP_lyasePhnL phospho 99.3 6.8E-12 1.5E-16 132.1 7.1 78 1055-1148 145-223 (224)
185 cd03258 ABC_MetN_methionine_tr 99.3 7E-12 1.5E-16 132.9 7.2 82 1055-1153 136-218 (233)
186 COG4559 ABC-type hemin transpo 99.3 1.2E-11 2.5E-16 118.4 7.7 88 1052-1153 128-218 (259)
187 TIGR01187 potA spermidine/putr 99.3 7.8E-12 1.7E-16 138.2 7.7 82 1055-1153 96-178 (325)
188 COG3638 ABC-type phosphate/pho 99.3 5.2E-12 1.1E-16 123.6 5.5 81 1052-1147 140-221 (258)
189 PRK13649 cbiO cobalt transport 99.3 8E-12 1.7E-16 136.2 7.6 81 1055-1153 141-222 (280)
190 TIGR03608 L_ocin_972_ABC putat 99.3 9.2E-12 2E-16 129.4 7.7 75 1055-1145 130-204 (206)
191 PRK11000 maltose/maltodextrin 99.3 7.1E-12 1.5E-16 140.6 7.4 82 1055-1153 129-211 (369)
192 cd03254 ABCC_Glucan_exporter_l 99.3 1.3E-11 2.8E-16 130.6 8.9 80 1055-1153 135-214 (229)
193 TIGR03265 PhnT2 putative 2-ami 99.3 8.2E-12 1.8E-16 138.8 7.7 82 1055-1153 130-212 (353)
194 PRK10070 glycine betaine trans 99.2 9.7E-12 2.1E-16 139.3 8.2 82 1055-1153 160-242 (400)
195 TIGR02770 nickel_nikD nickel i 99.2 8.9E-12 1.9E-16 131.5 7.5 82 1055-1153 121-203 (230)
196 cd03294 ABC_Pro_Gly_Bertaine T 99.2 9.2E-12 2E-16 134.4 7.7 82 1055-1153 156-238 (269)
197 PRK13540 cytochrome c biogenes 99.2 6.3E-12 1.4E-16 129.4 6.2 77 1055-1149 123-199 (200)
198 TIGR00972 3a0107s01c2 phosphat 99.2 1.1E-11 2.4E-16 132.5 8.3 80 1055-1153 140-220 (247)
199 cd03295 ABC_OpuCA_Osmoprotecti 99.2 6.2E-12 1.3E-16 134.0 6.2 82 1055-1153 131-213 (242)
200 TIGR01277 thiQ thiamine ABC tr 99.2 1E-11 2.2E-16 129.4 7.7 82 1055-1153 124-206 (213)
201 cd03232 ABC_PDR_domain2 The pl 99.2 1.1E-11 2.4E-16 126.5 7.8 73 1059-1147 108-182 (192)
202 cd03217 ABC_FeS_Assembly ABC-t 99.2 1.1E-11 2.4E-16 127.3 7.8 79 1057-1153 102-182 (200)
203 PRK11231 fecE iron-dicitrate t 99.2 1.2E-11 2.5E-16 132.9 8.3 81 1055-1153 134-215 (255)
204 PRK11831 putative ABC transpor 99.2 9E-12 2E-16 134.6 7.4 82 1055-1153 139-221 (269)
205 PRK14245 phosphate ABC transpo 99.2 1.2E-11 2.7E-16 132.4 8.4 80 1055-1153 142-222 (250)
206 cd03301 ABC_MalK_N The N-termi 99.2 9.3E-12 2E-16 130.0 7.2 82 1055-1153 126-208 (213)
207 PRK09493 glnQ glutamine ABC tr 99.2 1.1E-11 2.3E-16 132.1 7.7 81 1055-1153 132-213 (240)
208 cd03263 ABC_subfamily_A The AB 99.2 1.1E-11 2.4E-16 130.2 7.7 80 1055-1153 129-209 (220)
209 PRK13646 cbiO cobalt transport 99.2 1.2E-11 2.5E-16 134.7 8.2 82 1055-1153 141-223 (286)
210 PRK15112 antimicrobial peptide 99.2 6.9E-12 1.5E-16 135.3 6.3 81 1055-1152 145-226 (267)
211 COG3839 MalK ABC-type sugar tr 99.2 8.8E-12 1.9E-16 133.1 6.9 84 1053-1153 127-211 (338)
212 TIGR03873 F420-0_ABC_ATP propo 99.2 1.4E-11 3E-16 132.4 8.5 81 1055-1153 133-214 (256)
213 cd03222 ABC_RNaseL_inhibitor T 99.2 1.6E-11 3.5E-16 121.3 8.2 77 1060-1151 72-149 (177)
214 PRK14242 phosphate transporter 99.2 1.4E-11 3.1E-16 132.3 8.5 79 1055-1152 145-224 (253)
215 PRK13644 cbiO cobalt transport 99.2 1.3E-11 2.8E-16 133.5 8.2 81 1055-1153 132-212 (274)
216 PRK04778 septation ring format 99.2 1.5E-05 3.3E-10 95.1 60.3 73 935-1013 453-527 (569)
217 cd03253 ABCC_ATM1_transporter 99.2 1.5E-11 3.2E-16 130.8 8.6 80 1055-1153 133-212 (236)
218 PRK14268 phosphate ABC transpo 99.2 1.3E-11 2.9E-16 132.6 8.2 80 1055-1153 150-230 (258)
219 COG4988 CydD ABC-type transpor 99.2 1.2E-11 2.6E-16 138.0 7.9 79 1056-1153 453-531 (559)
220 TIGR02142 modC_ABC molybdenum 99.2 1.1E-11 2.4E-16 138.7 7.7 82 1055-1153 127-209 (354)
221 PRK11124 artP arginine transpo 99.2 1.3E-11 2.8E-16 131.6 7.9 81 1055-1153 137-218 (242)
222 PRK11144 modC molybdate transp 99.2 1.1E-11 2.5E-16 138.4 7.7 82 1055-1153 124-206 (352)
223 cd03251 ABCC_MsbA MsbA is an e 99.2 1.8E-11 3.9E-16 130.0 8.9 80 1055-1153 134-213 (234)
224 PRK11701 phnK phosphonate C-P 99.2 9.6E-12 2.1E-16 133.8 6.8 82 1055-1153 147-229 (258)
225 PRK09536 btuD corrinoid ABC tr 99.2 1.4E-11 3E-16 138.2 8.2 82 1054-1153 134-216 (402)
226 PRK14247 phosphate ABC transpo 99.2 1.7E-11 3.6E-16 131.5 8.5 80 1055-1153 142-222 (250)
227 PRK14250 phosphate ABC transpo 99.2 1.4E-11 3.1E-16 130.9 7.9 82 1055-1153 127-209 (241)
228 PRK14273 phosphate ABC transpo 99.2 1.7E-11 3.7E-16 131.7 8.6 80 1055-1153 146-226 (254)
229 PRK10575 iron-hydroxamate tran 99.2 1.4E-11 3E-16 132.9 7.9 82 1055-1153 143-225 (265)
230 TIGR03740 galliderm_ABC gallid 99.2 1.2E-11 2.7E-16 129.9 7.3 81 1055-1153 120-201 (223)
231 cd03244 ABCC_MRP_domain2 Domai 99.2 2.1E-11 4.4E-16 128.3 8.9 80 1055-1153 135-214 (221)
232 PRK10771 thiQ thiamine transpo 99.2 1.4E-11 3E-16 130.3 7.7 82 1055-1153 125-207 (232)
233 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.2 2.5E-11 5.4E-16 116.8 8.7 74 1059-1153 70-144 (144)
234 cd03267 ABC_NatA_like Similar 99.2 1.6E-11 3.4E-16 130.0 7.9 82 1055-1153 149-231 (236)
235 TIGR03411 urea_trans_UrtD urea 99.2 1.7E-11 3.7E-16 130.8 8.2 80 1055-1153 139-219 (242)
236 PRK13545 tagH teichoic acids e 99.2 1.7E-11 3.6E-16 138.3 8.4 81 1055-1153 139-220 (549)
237 COG2274 SunT ABC-type bacterio 99.2 1.4E-11 3E-16 146.9 8.1 79 1056-1153 606-684 (709)
238 PRK13548 hmuV hemin importer A 99.2 1.7E-11 3.6E-16 131.6 8.1 85 1055-1153 130-218 (258)
239 PRK14241 phosphate transporter 99.2 2E-11 4.3E-16 131.4 8.7 76 1055-1147 144-220 (258)
240 cd03213 ABCG_EPDR ABCG transpo 99.2 1.8E-11 3.9E-16 124.9 7.9 77 1059-1153 111-189 (194)
241 CHL00131 ycf16 sulfate ABC tra 99.2 1.5E-11 3.3E-16 132.1 7.7 80 1056-1153 147-229 (252)
242 TIGR03415 ABC_choXWV_ATP choli 99.2 1.5E-11 3.2E-16 136.7 7.8 82 1055-1153 160-242 (382)
243 cd00267 ABC_ATPase ABC (ATP-bi 99.2 2.1E-11 4.6E-16 120.2 8.0 72 1060-1147 81-153 (157)
244 TIGR02323 CP_lyasePhnK phospho 99.2 1.5E-11 3.3E-16 132.1 7.5 82 1055-1153 144-226 (253)
245 PRK14235 phosphate transporter 99.2 2E-11 4.4E-16 131.7 8.5 80 1055-1153 159-239 (267)
246 PRK13633 cobalt transporter AT 99.2 1.5E-11 3.3E-16 133.5 7.6 82 1055-1153 140-221 (280)
247 PRK14254 phosphate ABC transpo 99.2 2.2E-11 4.8E-16 132.2 8.7 81 1055-1153 176-257 (285)
248 TIGR03771 anch_rpt_ABC anchore 99.2 1.9E-11 4.2E-16 128.0 7.9 75 1055-1145 109-184 (223)
249 PRK11607 potG putrescine trans 99.2 1.6E-11 3.5E-16 137.3 7.8 83 1054-1153 144-227 (377)
250 cd03369 ABCC_NFT1 Domain 2 of 99.2 2.7E-11 5.9E-16 125.7 8.9 80 1055-1153 121-200 (207)
251 PRK10253 iron-enterobactin tra 99.2 1.9E-11 4.2E-16 131.8 8.0 82 1055-1153 139-221 (265)
252 cd03234 ABCG_White The White s 99.2 2.1E-11 4.5E-16 128.4 8.1 81 1055-1153 139-221 (226)
253 cd03276 ABC_SMC6_euk Eukaryoti 99.2 2.3E-11 4.9E-16 123.9 7.9 90 1051-1151 101-191 (198)
254 PRK15439 autoinducer 2 ABC tra 99.2 1.5E-11 3.3E-16 145.7 7.7 82 1054-1153 398-480 (510)
255 PRK13639 cbiO cobalt transport 99.2 2E-11 4.4E-16 132.2 7.9 81 1055-1153 133-214 (275)
256 PRK14239 phosphate transporter 99.2 2.2E-11 4.8E-16 130.8 8.2 80 1055-1153 144-224 (252)
257 PRK13648 cbiO cobalt transport 99.2 1.9E-11 4.1E-16 132.2 7.7 82 1055-1153 138-219 (269)
258 PRK13642 cbiO cobalt transport 99.2 1.9E-11 4.2E-16 132.5 7.8 81 1056-1153 137-217 (277)
259 PRK11300 livG leucine/isoleuci 99.2 2E-11 4.3E-16 131.4 7.8 82 1055-1153 149-231 (255)
260 cd03240 ABC_Rad50 The catalyti 99.2 3.3E-11 7.1E-16 123.5 8.9 85 1055-1151 111-199 (204)
261 PRK13635 cbiO cobalt transport 99.2 2E-11 4.4E-16 132.2 7.8 78 1055-1147 136-213 (279)
262 PRK13538 cytochrome c biogenes 99.2 1.9E-11 4.2E-16 126.2 7.3 75 1055-1145 125-199 (204)
263 PRK10744 pstB phosphate transp 99.2 2.6E-11 5.6E-16 130.6 8.6 80 1055-1153 152-232 (260)
264 PRK13652 cbiO cobalt transport 99.2 2.2E-11 4.7E-16 132.1 8.0 82 1055-1153 133-215 (277)
265 PRK14274 phosphate ABC transpo 99.2 2.5E-11 5.5E-16 130.6 8.5 80 1055-1153 151-231 (259)
266 PRK13632 cbiO cobalt transport 99.2 2E-11 4.4E-16 132.0 7.7 82 1055-1153 138-219 (271)
267 PRK03695 vitamin B12-transport 99.2 2.5E-11 5.3E-16 129.4 8.2 85 1055-1153 122-210 (248)
268 PRK14269 phosphate ABC transpo 99.2 2.7E-11 5.9E-16 129.3 8.5 80 1055-1153 138-218 (246)
269 TIGR03005 ectoine_ehuA ectoine 99.2 2E-11 4.3E-16 131.0 7.5 82 1055-1153 142-224 (252)
270 TIGR02769 nickel_nikE nickel i 99.2 1.7E-11 3.7E-16 132.3 6.9 82 1055-1153 146-228 (265)
271 PRK14257 phosphate ABC transpo 99.2 2.6E-11 5.6E-16 133.6 8.5 80 1055-1153 221-301 (329)
272 PRK13636 cbiO cobalt transport 99.2 2E-11 4.4E-16 132.6 7.6 82 1055-1153 137-219 (283)
273 PRK10418 nikD nickel transport 99.2 2.1E-11 4.5E-16 130.8 7.5 82 1055-1153 136-218 (254)
274 PRK14256 phosphate ABC transpo 99.2 2.5E-11 5.5E-16 130.2 8.2 80 1055-1153 144-224 (252)
275 TIGR03410 urea_trans_UrtE urea 99.2 2.2E-11 4.9E-16 128.8 7.6 78 1055-1147 127-205 (230)
276 PRK13640 cbiO cobalt transport 99.2 2.2E-11 4.7E-16 132.3 7.7 82 1055-1153 139-220 (282)
277 PRK13549 xylose transporter AT 99.2 1.7E-11 3.8E-16 145.5 7.5 82 1054-1153 400-482 (506)
278 PRK14272 phosphate ABC transpo 99.2 2.8E-11 6E-16 130.1 8.4 80 1055-1153 144-224 (252)
279 TIGR03522 GldA_ABC_ATP gliding 99.2 2.5E-11 5.4E-16 133.1 8.2 80 1055-1153 129-209 (301)
280 PRK10895 lipopolysaccharide AB 99.2 2.4E-11 5.2E-16 129.5 7.8 81 1055-1153 133-214 (241)
281 PRK14248 phosphate ABC transpo 99.2 2.8E-11 6.1E-16 130.9 8.5 80 1055-1153 160-240 (268)
282 PRK14265 phosphate ABC transpo 99.2 3.6E-11 7.7E-16 130.0 9.2 77 1055-1148 157-234 (274)
283 PRK14259 phosphate ABC transpo 99.2 3.3E-11 7.2E-16 130.0 8.9 76 1055-1147 150-226 (269)
284 COG4619 ABC-type uncharacteriz 99.2 2.7E-11 5.8E-16 111.0 6.7 89 1046-1149 120-209 (223)
285 PRK14267 phosphate ABC transpo 99.2 2.8E-11 6E-16 130.1 8.1 80 1055-1153 145-225 (253)
286 PRK14270 phosphate ABC transpo 99.2 3E-11 6.5E-16 129.5 8.3 80 1055-1153 143-223 (251)
287 COG4152 ABC-type uncharacteriz 99.2 2.1E-11 4.6E-16 119.2 6.3 83 1053-1153 124-207 (300)
288 PRK14240 phosphate transporter 99.2 3.4E-11 7.4E-16 129.1 8.7 80 1055-1153 142-222 (250)
289 KOG4674 Uncharacterized conser 99.2 8.4E-05 1.8E-09 94.4 88.5 64 821-884 1237-1300(1822)
290 PRK14249 phosphate ABC transpo 99.2 3.5E-11 7.5E-16 129.0 8.6 80 1055-1153 143-223 (251)
291 PRK13543 cytochrome c biogenes 99.2 2.9E-11 6.3E-16 125.9 7.6 77 1055-1147 133-210 (214)
292 cd03250 ABCC_MRP_domain1 Domai 99.2 4.8E-11 1E-15 123.5 9.2 81 1055-1153 123-204 (204)
293 cd03290 ABCC_SUR1_N The SUR do 99.2 4.5E-11 9.7E-16 125.2 9.1 80 1055-1152 136-217 (218)
294 PRK14244 phosphate ABC transpo 99.2 3.3E-11 7.1E-16 129.2 8.2 80 1055-1153 145-225 (251)
295 TIGR02982 heterocyst_DevA ABC 99.2 2.7E-11 5.9E-16 126.9 7.4 82 1055-1153 137-218 (220)
296 cd03277 ABC_SMC5_euk Eukaryoti 99.2 2.7E-11 5.7E-16 124.7 7.1 89 1054-1153 121-211 (213)
297 PRK13546 teichoic acids export 99.2 3.2E-11 6.9E-16 128.8 8.0 81 1055-1153 139-220 (264)
298 cd03231 ABC_CcmA_heme_exporter 99.2 2.8E-11 6.1E-16 124.6 7.3 75 1055-1145 121-196 (201)
299 PRK14275 phosphate ABC transpo 99.2 3.4E-11 7.4E-16 130.9 8.4 80 1055-1153 178-258 (286)
300 PRK10938 putative molybdenum t 99.2 2.5E-11 5.5E-16 143.8 7.9 82 1054-1153 130-212 (490)
301 PRK09700 D-allose transporter 99.2 2.5E-11 5.4E-16 144.5 7.8 83 1053-1153 403-486 (510)
302 PRK10419 nikE nickel transport 99.2 2.4E-11 5.2E-16 131.1 7.0 78 1055-1147 147-225 (268)
303 COG4172 ABC-type uncharacteriz 99.2 2.1E-11 4.5E-16 127.7 6.2 84 1053-1153 151-235 (534)
304 PRK14255 phosphate ABC transpo 99.2 3.5E-11 7.6E-16 129.2 8.1 80 1055-1153 144-224 (252)
305 PRK10762 D-ribose transporter 99.2 2.5E-11 5.5E-16 143.9 7.7 82 1054-1153 390-472 (501)
306 COG1129 MglA ABC-type sugar tr 99.2 2.8E-11 6E-16 135.0 7.4 81 1055-1153 141-222 (500)
307 PRK14262 phosphate ABC transpo 99.2 3.8E-11 8.2E-16 128.8 8.3 76 1055-1147 142-218 (250)
308 PRK15056 manganese/iron transp 99.2 3.9E-11 8.5E-16 129.8 8.5 75 1055-1145 138-213 (272)
309 PRK10261 glutathione transport 99.2 1.9E-11 4E-16 148.0 6.6 83 1054-1153 458-541 (623)
310 PRK14253 phosphate ABC transpo 99.2 4E-11 8.7E-16 128.5 8.5 80 1055-1153 141-221 (249)
311 cd03289 ABCC_CFTR2 The CFTR su 99.2 4.8E-11 1E-15 127.8 9.0 78 1057-1153 136-213 (275)
312 PRK15134 microcin C ABC transp 99.2 2.3E-11 4.9E-16 145.4 7.2 83 1054-1153 151-234 (529)
313 PRK09984 phosphonate/organopho 99.2 3.1E-11 6.8E-16 130.2 7.4 78 1055-1147 148-226 (262)
314 PRK14238 phosphate transporter 99.2 4.2E-11 9.2E-16 129.4 8.4 80 1055-1153 163-243 (271)
315 COG0410 LivF ABC-type branched 99.2 1.2E-11 2.6E-16 121.4 3.7 127 1010-1153 87-214 (237)
316 PRK14251 phosphate ABC transpo 99.2 3.9E-11 8.5E-16 128.7 8.1 80 1055-1153 143-223 (251)
317 TIGR01166 cbiO cobalt transpor 99.2 2.2E-11 4.9E-16 124.4 5.9 66 1055-1136 123-188 (190)
318 PRK11288 araG L-arabinose tran 99.2 2.8E-11 6E-16 143.6 7.5 82 1054-1153 391-473 (501)
319 PRK09544 znuC high-affinity zi 99.2 3.6E-11 7.8E-16 127.8 7.6 78 1055-1147 116-194 (251)
320 PRK14243 phosphate transporter 99.2 5.4E-11 1.2E-15 128.1 9.0 76 1055-1147 147-223 (264)
321 PRK13547 hmuV hemin importer A 99.2 3.8E-11 8.3E-16 129.0 7.8 86 1055-1153 141-232 (272)
322 TIGR02633 xylG D-xylose ABC tr 99.2 3.1E-11 6.8E-16 143.4 7.8 81 1055-1153 399-480 (500)
323 TIGR03269 met_CoM_red_A2 methy 99.2 3.4E-11 7.5E-16 143.7 8.1 82 1055-1153 164-246 (520)
324 PRK13539 cytochrome c biogenes 99.2 3.6E-11 7.9E-16 124.4 7.2 77 1055-1148 123-199 (207)
325 PRK14258 phosphate ABC transpo 99.2 4.8E-11 1E-15 128.4 8.4 77 1055-1146 146-223 (261)
326 TIGR02633 xylG D-xylose ABC tr 99.2 3.7E-11 8E-16 142.8 8.1 81 1055-1153 137-218 (500)
327 PRK11174 cysteine/glutathione 99.2 4.9E-11 1.1E-15 145.2 9.4 78 1057-1153 483-560 (588)
328 PRK10982 galactose/methyl gala 99.2 3.4E-11 7.3E-16 142.6 7.6 82 1054-1153 386-468 (491)
329 cd03299 ABC_ModC_like Archeal 99.2 4.4E-11 9.6E-16 126.6 7.6 82 1055-1153 125-207 (235)
330 PRK14271 phosphate ABC transpo 99.2 5.2E-11 1.1E-15 128.8 8.3 80 1055-1153 159-239 (276)
331 cd03288 ABCC_SUR2 The SUR doma 99.2 6E-11 1.3E-15 127.3 8.7 79 1056-1153 153-231 (257)
332 PRK14264 phosphate ABC transpo 99.2 5.9E-11 1.3E-15 130.2 8.7 81 1055-1153 196-277 (305)
333 PRK15134 microcin C ABC transp 99.2 2.5E-11 5.4E-16 145.1 6.2 82 1055-1153 421-503 (529)
334 PRK10982 galactose/methyl gala 99.2 4.5E-11 9.7E-16 141.6 8.3 81 1055-1153 130-211 (491)
335 COG4987 CydC ABC-type transpor 99.2 4.6E-11 1E-15 130.8 7.6 79 1056-1153 471-549 (573)
336 PRK14261 phosphate ABC transpo 99.2 5.5E-11 1.2E-15 127.6 8.1 80 1055-1153 145-225 (253)
337 PRK15439 autoinducer 2 ABC tra 99.2 4.6E-11 9.9E-16 141.7 8.1 81 1055-1153 136-217 (510)
338 PRK11288 araG L-arabinose tran 99.2 5.1E-11 1.1E-15 141.4 8.4 81 1055-1153 136-217 (501)
339 PRK14237 phosphate transporter 99.2 6.4E-11 1.4E-15 127.8 8.5 80 1055-1153 159-239 (267)
340 cd03233 ABC_PDR_domain1 The pl 99.2 6.1E-11 1.3E-15 122.0 7.9 82 1055-1153 114-197 (202)
341 PRK09700 D-allose transporter 99.2 4.9E-11 1.1E-15 142.0 8.2 82 1054-1153 140-222 (510)
342 TIGR02203 MsbA_lipidA lipid A 99.2 5.9E-11 1.3E-15 144.4 9.0 77 1058-1153 468-544 (571)
343 PRK10261 glutathione transport 99.2 4.3E-11 9.3E-16 144.9 7.7 83 1054-1153 163-246 (623)
344 PRK14236 phosphate transporter 99.2 6.3E-11 1.4E-15 128.2 8.2 80 1055-1153 164-244 (272)
345 PRK13549 xylose transporter AT 99.1 5.1E-11 1.1E-15 141.5 8.2 81 1055-1153 139-220 (506)
346 cd03271 ABC_UvrA_II The excisi 99.1 7.9E-11 1.7E-15 123.8 8.5 80 1055-1147 165-244 (261)
347 PRK10762 D-ribose transporter 99.1 5.5E-11 1.2E-15 141.1 8.2 82 1054-1153 136-218 (501)
348 cd03300 ABC_PotA_N PotA is an 99.1 5.7E-11 1.2E-15 125.5 7.3 82 1055-1153 126-208 (232)
349 TIGR00968 3a0106s01 sulfate AB 99.1 6.1E-11 1.3E-15 125.7 7.4 81 1055-1153 126-208 (237)
350 COG3096 MukB Uncharacterized p 99.1 4E-05 8.6E-10 86.0 92.0 133 983-1133 1286-1435(1480)
351 COG4778 PhnL ABC-type phosphon 99.1 3.7E-11 8E-16 110.2 4.7 81 1053-1149 146-227 (235)
352 PRK14263 phosphate ABC transpo 99.1 9.3E-11 2E-15 125.8 8.7 76 1055-1147 145-221 (261)
353 PRK13541 cytochrome c biogenes 99.1 4.9E-11 1.1E-15 122.2 6.2 74 1055-1144 119-192 (195)
354 PRK14260 phosphate ABC transpo 99.1 1E-10 2.2E-15 125.8 8.9 77 1055-1148 146-223 (259)
355 cd03241 ABC_RecN RecN ATPase i 99.1 1.4E-10 2.9E-15 125.5 9.7 83 1055-1150 166-248 (276)
356 PRK11176 lipid transporter ATP 99.1 9.1E-11 2E-15 142.8 9.4 78 1057-1153 478-555 (582)
357 PRK14252 phosphate ABC transpo 99.1 1E-10 2.2E-15 126.4 8.4 80 1055-1153 157-237 (265)
358 PRK13657 cyclic beta-1,2-gluca 99.1 9.5E-11 2.1E-15 142.3 9.1 78 1057-1153 469-546 (588)
359 TIGR03269 met_CoM_red_A2 methy 99.1 6.6E-11 1.4E-15 141.3 7.3 82 1055-1153 423-505 (520)
360 PRK10636 putative ABC transpor 99.1 6.8E-11 1.5E-15 143.1 7.5 79 1054-1153 425-504 (638)
361 PRK13409 putative ATPase RIL; 99.1 8.9E-11 1.9E-15 139.6 8.4 79 1054-1147 448-527 (590)
362 PRK10938 putative molybdenum t 99.1 7.4E-11 1.6E-15 139.8 7.5 83 1054-1153 396-480 (490)
363 PRK14246 phosphate ABC transpo 99.1 1.2E-10 2.7E-15 124.5 8.3 76 1055-1147 149-225 (257)
364 cd03291 ABCC_CFTR1 The CFTR su 99.1 1.3E-10 2.9E-15 125.0 8.5 79 1056-1153 156-235 (282)
365 cd03227 ABC_Class2 ABC-type Cl 99.1 1.4E-10 3.1E-15 114.4 8.0 81 1059-1151 77-157 (162)
366 PRK14266 phosphate ABC transpo 99.1 1.4E-10 2.9E-15 124.5 8.5 74 1055-1145 142-216 (250)
367 cd03236 ABC_RNaseL_inhibitor_d 99.1 1.4E-10 3E-15 123.1 8.3 77 1055-1147 135-212 (255)
368 TIGR01192 chvA glucan exporter 99.1 1.3E-10 2.8E-15 140.2 8.8 79 1056-1153 468-546 (585)
369 COG0396 sufC Cysteine desulfur 99.1 1.7E-10 3.7E-15 112.7 7.8 71 1059-1145 144-216 (251)
370 KOG0058 Peptide exporter, ABC 99.1 1.5E-10 3.2E-15 132.1 8.4 78 1057-1153 602-679 (716)
371 KOG0055 Multidrug/pheromone ex 99.1 1.3E-10 2.8E-15 140.8 8.2 76 1059-1153 489-564 (1228)
372 PRK10790 putative multidrug tr 99.1 1.7E-10 3.7E-15 140.4 9.2 78 1057-1153 474-551 (592)
373 PRK15177 Vi polysaccharide exp 99.1 1.5E-10 3.3E-15 119.9 7.5 80 1055-1153 100-180 (213)
374 TIGR01189 ccmA heme ABC export 99.1 1E-10 2.2E-15 120.3 6.1 67 1055-1137 123-189 (198)
375 COG4555 NatA ABC-type Na+ tran 99.1 2.1E-10 4.5E-15 109.1 7.3 76 1055-1146 129-205 (245)
376 PRK13409 putative ATPase RIL; 99.1 2.1E-10 4.6E-15 136.4 8.9 77 1054-1147 207-284 (590)
377 TIGR03375 type_I_sec_LssB type 99.1 1.8E-10 3.9E-15 142.7 8.5 78 1057-1153 599-676 (694)
378 PRK10789 putative multidrug tr 99.1 2E-10 4.3E-15 138.5 8.6 78 1057-1153 449-526 (569)
379 TIGR01842 type_I_sec_PrtD type 99.1 2.1E-10 4.5E-15 137.8 8.6 79 1057-1153 452-530 (544)
380 PRK10636 putative ABC transpor 99.1 1.8E-10 3.8E-15 139.5 8.0 79 1054-1153 144-223 (638)
381 PRK11160 cysteine/glutathione 99.1 2.5E-10 5.3E-15 137.7 8.8 79 1056-1153 472-550 (574)
382 COG1132 MdlB ABC-type multidru 99.1 2.8E-10 6.1E-15 137.6 9.1 78 1057-1153 463-540 (567)
383 PRK15064 ABC transporter ATP-b 99.1 1.9E-10 4.2E-15 137.5 7.5 78 1055-1153 151-229 (530)
384 TIGR02204 MsbA_rel ABC transpo 99.1 2.9E-10 6.3E-15 138.3 9.2 78 1057-1153 474-551 (576)
385 TIGR01846 type_I_sec_HlyB type 99.1 3.2E-10 6.9E-15 140.3 9.6 78 1057-1153 591-668 (694)
386 TIGR01193 bacteriocin_ABC ABC- 99.1 3.1E-10 6.8E-15 140.9 9.5 77 1057-1153 609-685 (708)
387 TIGR03797 NHPM_micro_ABC2 NHPM 99.0 2.4E-10 5.3E-15 141.3 8.3 76 1057-1153 586-661 (686)
388 KOG0057 Mitochondrial Fe/S clu 99.0 3.1E-10 6.8E-15 124.5 8.0 77 1055-1148 483-559 (591)
389 TIGR01194 cyc_pep_trnsptr cycl 99.0 2.8E-10 6.1E-15 136.6 8.3 79 1057-1153 468-547 (555)
390 PRK15064 ABC transporter ATP-b 99.0 2.4E-10 5.3E-15 136.6 7.7 75 1054-1147 433-508 (530)
391 TIGR03796 NHPM_micro_ABC1 NHPM 99.0 3.7E-10 8E-15 140.5 9.5 76 1057-1153 613-688 (710)
392 PRK11147 ABC transporter ATPas 99.0 2.9E-10 6.3E-15 138.3 8.3 78 1055-1153 152-230 (635)
393 cd03279 ABC_sbcCD SbcCD and ot 99.0 4.9E-10 1.1E-14 116.3 8.9 86 1054-1152 118-210 (213)
394 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 3E-10 6.4E-15 136.3 8.2 78 1055-1153 157-235 (552)
395 PRK11819 putative ABC transpor 99.0 3.1E-10 6.7E-15 136.1 8.2 78 1055-1153 159-237 (556)
396 PLN03073 ABC transporter F fam 99.0 3E-10 6.5E-15 137.7 7.8 79 1054-1153 622-701 (718)
397 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 3.5E-10 7.5E-15 135.7 8.2 75 1054-1147 438-513 (552)
398 TIGR00630 uvra excinuclease AB 99.0 4E-10 8.6E-15 138.2 8.1 78 1055-1147 483-561 (924)
399 PRK10522 multidrug transporter 99.0 4.2E-10 9.1E-15 135.1 7.9 79 1058-1153 448-526 (547)
400 COG4618 ArpD ABC-type protease 99.0 6.3E-10 1.4E-14 120.8 8.2 79 1057-1153 470-548 (580)
401 TIGR02857 CydD thiol reductant 99.0 5.5E-10 1.2E-14 134.2 8.6 73 1056-1145 455-527 (529)
402 TIGR00958 3a01208 Conjugate Tr 99.0 5.7E-10 1.2E-14 137.8 8.9 76 1057-1153 615-690 (711)
403 PRK03918 chromosome segregatio 99.0 0.00054 1.2E-08 88.4 85.2 136 995-1153 735-872 (880)
404 PRK11147 ABC transporter ATPas 99.0 3.9E-10 8.4E-15 137.2 7.3 75 1054-1147 435-510 (635)
405 PTZ00265 multidrug resistance 99.0 6.1E-10 1.3E-14 145.6 9.5 76 1057-1147 1356-1431(1466)
406 COG1119 ModF ABC-type molybden 99.0 7.4E-10 1.6E-14 109.8 7.7 72 1053-1138 165-236 (257)
407 PLN03211 ABC transporter G-25; 99.0 5.5E-10 1.2E-14 134.8 8.0 80 1056-1153 203-284 (659)
408 PLN03073 ABC transporter F fam 99.0 4.7E-10 1E-14 136.0 7.4 75 1054-1147 339-414 (718)
409 PRK00349 uvrA excinuclease ABC 99.0 7.5E-10 1.6E-14 136.1 8.4 78 1055-1149 485-563 (943)
410 PRK11819 putative ABC transpor 99.0 8E-10 1.7E-14 132.5 8.2 75 1054-1147 440-515 (556)
411 PF12128 DUF3584: Protein of u 99.0 0.0008 1.7E-08 88.1 86.5 113 23-138 9-138 (1201)
412 cd03227 ABC_Class2 ABC-type Cl 99.0 5.6E-10 1.2E-14 110.1 5.6 51 13-63 2-54 (162)
413 COG4107 PhnK ABC-type phosphon 99.0 1.5E-09 3.2E-14 100.1 7.8 88 1049-1153 141-229 (258)
414 TIGR01257 rim_protein retinal- 98.9 1.2E-09 2.6E-14 142.9 8.7 83 1052-1153 1054-1137(2272)
415 PTZ00265 multidrug resistance 98.9 1.2E-09 2.7E-14 142.8 8.8 81 1055-1152 575-655 (1466)
416 COG0488 Uup ATPase components 98.9 1.1E-09 2.4E-14 126.2 7.4 76 1054-1148 434-510 (530)
417 TIGR01257 rim_protein retinal- 98.9 1.1E-09 2.3E-14 143.3 7.9 82 1054-1153 2065-2147(2272)
418 TIGR00954 3a01203 Peroxysomal 98.9 1.7E-09 3.6E-14 131.7 9.1 72 1057-1147 580-651 (659)
419 COG0488 Uup ATPase components 98.9 1.4E-09 3E-14 125.5 7.9 75 1054-1147 148-223 (530)
420 PRK10535 macrolide transporter 98.9 1.3E-09 2.8E-14 132.6 7.7 80 1056-1153 141-220 (648)
421 COG4604 CeuD ABC-type enteroch 98.9 5.4E-10 1.2E-14 105.7 3.4 95 1041-1153 118-213 (252)
422 KOG4674 Uncharacterized conser 98.9 0.00091 2E-08 85.4 95.0 68 235-302 192-263 (1822)
423 KOG0062 ATPase component of AB 98.9 1.7E-09 3.7E-14 117.6 7.2 80 1049-1147 472-552 (582)
424 PRK00635 excinuclease ABC subu 98.9 1.7E-09 3.7E-14 138.8 8.1 77 1055-1147 472-550 (1809)
425 KOG0055 Multidrug/pheromone ex 98.9 2.2E-09 4.7E-14 130.4 8.3 79 1056-1153 1123-1201(1228)
426 PLN03232 ABC transporter C fam 98.9 3.7E-09 8E-14 140.0 9.8 78 1057-1153 1369-1446(1495)
427 COG1245 Predicted ATPase, RNas 98.9 3.7E-09 8E-14 112.9 7.8 84 1053-1152 207-291 (591)
428 COG1101 PhnK ABC-type uncharac 98.9 4E-09 8.7E-14 101.6 6.9 82 1055-1153 144-226 (263)
429 TIGR02868 CydC thiol reductant 98.9 3E-09 6.5E-14 127.8 7.6 62 1057-1135 468-529 (529)
430 TIGR00957 MRP_assoc_pro multi 98.9 4.8E-09 1E-13 139.2 9.7 78 1057-1153 1419-1496(1522)
431 COG0411 LivG ABC-type branched 98.9 6.6E-09 1.4E-13 103.3 8.2 85 1052-1153 142-227 (250)
432 PLN03130 ABC transporter C fam 98.8 5.5E-09 1.2E-13 138.3 9.5 78 1057-1153 1372-1449(1622)
433 TIGR00955 3a01204 The Eye Pigm 98.8 4E-09 8.8E-14 127.7 7.6 79 1057-1153 164-244 (617)
434 PTZ00243 ABC transporter; Prov 98.8 5.6E-09 1.2E-13 138.1 9.5 79 1057-1153 1443-1521(1560)
435 TIGR01271 CFTR_protein cystic 98.8 5.5E-09 1.2E-13 138.1 9.3 78 1057-1153 1351-1428(1490)
436 PRK00349 uvrA excinuclease ABC 98.8 5.8E-09 1.3E-13 128.4 8.5 77 1055-1147 826-905 (943)
437 PF13166 AAA_13: AAA domain 98.8 5.9E-06 1.3E-10 103.5 35.5 75 1055-1139 496-575 (712)
438 TIGR00630 uvra excinuclease AB 98.8 7.1E-09 1.5E-13 127.3 8.6 80 1055-1147 824-903 (924)
439 PLN03140 ABC transporter G fam 98.8 5.8E-09 1.3E-13 135.9 7.8 75 1057-1147 1017-1093(1470)
440 PLN03232 ABC transporter C fam 98.8 1.1E-08 2.4E-13 135.6 9.2 78 1057-1153 738-816 (1495)
441 COG3950 Predicted ATP-binding 98.8 3.5E-09 7.6E-14 108.8 3.4 51 8-59 1-52 (440)
442 COG1245 Predicted ATPase, RNas 98.8 1.3E-08 2.9E-13 108.8 7.5 85 1054-1153 450-535 (591)
443 COG5265 ATM1 ABC-type transpor 98.8 1E-08 2.2E-13 108.9 6.6 76 1059-1153 399-474 (497)
444 COG3845 ABC-type uncharacteriz 98.7 1.7E-08 3.6E-13 110.3 7.9 81 1054-1152 135-216 (501)
445 COG1129 MglA ABC-type sugar tr 98.7 1.3E-08 2.9E-13 113.9 7.0 81 1055-1153 397-478 (500)
446 TIGR01271 CFTR_protein cystic 98.7 1.4E-08 3.1E-13 134.3 8.6 77 1057-1152 546-623 (1490)
447 PRK00635 excinuclease ABC subu 98.7 1.5E-08 3.3E-13 130.3 8.4 80 1055-1147 805-884 (1809)
448 COG4133 CcmA ABC-type transpor 98.7 1.7E-08 3.8E-13 95.5 6.6 72 1053-1140 124-195 (209)
449 PLN03130 ABC transporter C fam 98.7 1.7E-08 3.6E-13 133.8 8.9 78 1057-1153 738-816 (1622)
450 COG4586 ABC-type uncharacteriz 98.7 1.9E-08 4E-13 100.8 6.8 82 1055-1153 152-234 (325)
451 TIGR00957 MRP_assoc_pro multi 98.7 1.7E-08 3.6E-13 134.1 8.4 82 1056-1153 757-838 (1522)
452 TIGR00956 3a01205 Pleiotropic 98.7 1.5E-08 3.4E-13 132.6 7.4 81 1056-1153 206-288 (1394)
453 PF06470 SMC_hinge: SMC protei 98.7 3E-08 6.5E-13 92.7 6.9 67 517-584 2-120 (120)
454 PRK00064 recF recombination pr 98.7 7.3E-07 1.6E-11 100.0 19.0 150 980-1153 173-358 (361)
455 PF10174 Cast: RIM-binding pro 98.7 0.0029 6.4E-08 76.2 72.3 32 167-198 52-83 (775)
456 PTZ00243 ABC transporter; Prov 98.7 2.9E-08 6.3E-13 131.4 8.5 79 1056-1153 779-858 (1560)
457 PF11398 DUF2813: Protein of u 98.7 1.5E-07 3.2E-12 103.0 12.4 61 8-71 1-61 (373)
458 COG4136 ABC-type uncharacteriz 98.7 3.3E-08 7.2E-13 89.0 5.5 81 1054-1149 129-209 (213)
459 TIGR00956 3a01205 Pleiotropic 98.6 3E-08 6.4E-13 130.0 7.4 71 1059-1145 901-974 (1394)
460 COG1106 Predicted ATPases [Gen 98.6 1.9E-08 4E-13 109.0 4.1 51 9-60 1-51 (371)
461 PLN03140 ABC transporter G fam 98.6 2.1E-08 4.6E-13 130.7 4.9 82 1055-1153 332-415 (1470)
462 PF00261 Tropomyosin: Tropomyo 98.6 0.00012 2.6E-09 76.8 31.5 70 285-354 37-106 (237)
463 COG4167 SapF ABC-type antimicr 98.6 6.4E-08 1.4E-12 90.3 6.2 91 1046-1153 136-227 (267)
464 KOG0062 ATPase component of AB 98.6 4.8E-08 1E-12 106.6 5.9 71 1055-1144 194-265 (582)
465 KOG0056 Heavy metal exporter H 98.6 5.3E-08 1.1E-12 104.6 5.8 73 1058-1147 673-745 (790)
466 PF00261 Tropomyosin: Tropomyo 98.5 0.00015 3.3E-09 76.0 30.3 51 286-336 31-81 (237)
467 TIGR00611 recf recF protein. A 98.5 2.2E-06 4.7E-11 95.9 16.4 137 980-1138 179-344 (365)
468 PF01576 Myosin_tail_1: Myosin 98.5 1.9E-08 4.1E-13 124.5 -0.2 69 658-726 665-733 (859)
469 PRK01156 chromosome segregatio 98.5 0.014 3E-07 75.2 83.8 90 1054-1153 796-888 (895)
470 cd03242 ABC_RecF RecF is a rec 98.4 1E-06 2.2E-11 95.1 11.3 82 1056-1153 180-268 (270)
471 COG1134 TagH ABC-type polysacc 98.4 3.5E-07 7.7E-12 91.4 7.0 81 1055-1153 143-224 (249)
472 KOG0927 Predicted transporter 98.4 1.6E-07 3.4E-12 103.3 4.6 73 1054-1145 504-577 (614)
473 KOG0066 eIF2-interacting prote 98.4 2.8E-07 6E-12 97.6 6.2 69 1056-1143 701-769 (807)
474 KOG0059 Lipid exporter ABCA1 a 98.4 2E-07 4.3E-12 116.9 5.9 81 1055-1153 694-775 (885)
475 KOG0061 Transporter, ABC super 98.4 2.7E-07 5.9E-12 110.3 6.7 72 1058-1145 169-242 (613)
476 PF13166 AAA_13: AAA domain 98.4 0.0059 1.3E-07 76.7 45.7 41 17-57 1-42 (712)
477 KOG0927 Predicted transporter 98.4 4E-07 8.7E-12 100.2 6.7 80 1055-1152 217-297 (614)
478 PF01576 Myosin_tail_1: Myosin 98.4 5.8E-08 1.3E-12 120.2 0.0 15 935-949 663-677 (859)
479 KOG0054 Multidrug resistance-a 98.4 4.7E-07 1E-11 113.5 7.7 78 1057-1153 641-719 (1381)
480 PF10174 Cast: RIM-binding pro 98.4 0.016 3.4E-07 70.1 84.4 63 658-720 472-534 (775)
481 PF13558 SbcCD_C: Putative exo 98.4 2.9E-07 6.2E-12 79.7 4.1 55 1054-1108 27-90 (90)
482 cd03280 ABC_MutS2 MutS2 homolo 98.4 3.3E-07 7.1E-12 94.2 4.9 78 1053-1147 85-163 (200)
483 COG1340 Uncharacterized archae 98.4 0.0053 1.2E-07 63.7 37.0 78 408-485 170-247 (294)
484 COG4604 CeuD ABC-type enteroch 98.3 4.3E-07 9.2E-12 86.5 4.7 49 13-61 2-57 (252)
485 COG4178 ABC-type uncharacteriz 98.3 7.5E-07 1.6E-11 102.2 7.5 73 1058-1147 514-586 (604)
486 COG1120 FepC ABC-type cobalami 98.3 6.5E-07 1.4E-11 92.3 5.8 49 13-61 3-58 (258)
487 COG0178 UvrA Excinuclease ATPa 98.3 7.5E-07 1.6E-11 102.9 6.6 85 1055-1152 818-902 (935)
488 PF13175 AAA_15: AAA ATPase do 98.3 5.8E-07 1.3E-11 105.3 5.4 72 1055-1137 337-414 (415)
489 COG3593 Predicted ATP-dependen 98.3 6.9E-07 1.5E-11 102.2 5.1 64 8-73 1-64 (581)
490 PF00038 Filament: Intermediat 98.3 0.014 3.1E-07 64.8 41.0 29 184-212 6-34 (312)
491 COG4674 Uncharacterized ABC-ty 98.2 1.2E-06 2.7E-11 83.3 5.2 77 1052-1145 140-217 (249)
492 COG4637 Predicted ATPase [Gene 98.2 5.4E-07 1.2E-11 92.3 2.8 68 1057-1139 268-335 (373)
493 KOG0977 Nuclear envelope prote 98.2 0.021 4.5E-07 65.2 38.3 41 172-212 32-72 (546)
494 KOG0994 Extracellular matrix g 98.2 0.029 6.3E-07 67.3 39.1 320 158-484 1422-1749(1758)
495 PRK14079 recF recombination pr 98.1 5.7E-05 1.2E-09 84.4 16.9 143 980-1148 170-339 (349)
496 COG4694 Uncharacterized protei 98.1 5.9E-05 1.3E-09 82.6 16.0 153 955-1138 443-600 (758)
497 PF13304 AAA_21: AAA domain; P 98.1 3.1E-06 6.6E-11 93.6 6.7 72 1053-1138 230-302 (303)
498 KOG0060 Long-chain acyl-CoA tr 98.1 4.9E-06 1.1E-10 92.6 7.6 70 1057-1145 568-637 (659)
499 COG0178 UvrA Excinuclease ATPa 98.1 4.8E-06 1E-10 96.4 7.6 79 1055-1147 477-555 (935)
500 PRK04778 septation ring format 98.1 0.061 1.3E-06 64.7 42.0 348 158-523 178-557 (569)
No 1
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1e-133 Score=1133.67 Aligned_cols=1076 Identities=44% Similarity=0.725 Sum_probs=979.1
Q ss_pred CCceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceE
Q 036401 7 PGKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRA 86 (1154)
Q Consensus 7 ~~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a 86 (1154)
||+|..|+|.|||||.|.++||||..||+|||||||||||+||||.||||.+++.+|++.+.|||| |. +..+
T Consensus 1 ~g~L~~lEieNFKSYkGh~~iGPF~~FTaIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdLIy-g~-------~i~~ 72 (1141)
T KOG0018|consen 1 MGRLLTLEIENFKSYKGHQVIGPFDRFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDLIY-GK-------PIRK 72 (1141)
T ss_pred CCceeeeehhccccccCceeecCchhceeeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHHhc-CC-------ccCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999 53 2346
Q ss_pred EEEEEEEeCCCceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHHHHHHH
Q 036401 87 FVRLVYQLGNESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQ 166 (1154)
Q Consensus 87 ~v~~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~e~ 166 (1154)
.|++.|.-++|....++|.|+ +|.|+|+|||+.|+..+|...|...||.+.+++|+||||.|+.|+.++|.++..|||+
T Consensus 73 ~v~l~Y~~~dg~~~~F~R~I~-~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkElt~LFEE 151 (1141)
T KOG0018|consen 73 PVTLKYEEGDGETRRFTRAIN-GGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKELTALFEE 151 (1141)
T ss_pred chhheeecCCchhhhhhhhhc-CCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHHHHHHHHH
Confidence 677999989999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 036401 167 ISGSDELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAERHLRLQDQLKSLKKEHFLWQLFNIEKDITK 246 (1154)
Q Consensus 167 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~~~~~~~~el~~l~~~~~~~~l~~~~~~l~~ 246 (1154)
++|+..|+..|++++.+...+.+........++.|..+...++..+.++++|+.+..+...+...+.+|++++.+..+..
T Consensus 152 ISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k 231 (1141)
T KOG0018|consen 152 ISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEK 231 (1141)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhhHHHHHHHHHHHHHHHHH
Q 036401 247 ASKDLEAEKRSREEVMRELEHFEDQKRGKRKELAKYLKEIAQCEKKIAERNNRLDKSQPELLKLNEEMSRINSKIKSSKK 326 (1154)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~ 326 (1154)
...++..+..++..+....+..+.++.....+...+..++..++..+...+..+.. +.++-.+.........++...+.
T Consensus 232 ~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k 310 (1141)
T KOG0018|consen 232 ANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEK 310 (1141)
T ss_pred hhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhh
Confidence 99999999999999999999999999888888888889999999999988888888 77788888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccC----CCCCchhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 036401 327 ELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSRDGAG----RLPLLDTQLTEYFQIKEEAGMKTAKLRDEKEVLD 402 (1154)
Q Consensus 327 ~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 402 (1154)
.+...+.........+..+++++..+......+..+++.... .+.+.+...++|..+..++..+. ..++..+.
T Consensus 311 ~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~---~~el~~ln 387 (1141)
T KOG0018|consen 311 DIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA---LEELEVLN 387 (1141)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---HHHHHHHH
Confidence 999999999999999999999999988888888887765533 34566777888888887665443 77788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 403 REQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELRSMQDKHRDSRQKYENLKSKI 482 (1154)
Q Consensus 403 ~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~l 482 (1154)
......+..+..+......++.++..+...+.++......+...+..+...+..+...+..++........+...++.+|
T Consensus 388 ~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL 467 (1141)
T KOG0018|consen 388 RNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEEL 467 (1141)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888899998888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHH
Q 036401 483 GEIENQLRELKADRHENERDAKLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIK 562 (1154)
Q Consensus 483 ~~l~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~ 562 (1154)
.....++..+........+......++..++.+||||+|+|.|||.|...+|..|+.+++|.++++||||+..+|..||.
T Consensus 468 ~~~~~ql~das~dr~e~sR~~~~~eave~lKr~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ 547 (1141)
T KOG0018|consen 468 VEVLDQLLDASADRHEGSRRSRKQEAVEALKRLFPGVYGRVIDLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARDCIQ 547 (1141)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhCCCccchhhhcccccHHHHHHHHHHHHhcccceEEeccHHHHHHHHH
Confidence 99999999988887777677788899999999999999999999999888999999999999999999999999999997
Q ss_pred ------------------------------------------------HHHHHhCCeEecCChHHHHhhhcc-CCceeEE
Q 036401 563 ------------------------------------------------AVLFAVGNTLVCDGLDEAKVLSWS-GERFRVV 593 (1154)
Q Consensus 563 ------------------------------------------------ai~~~lg~~lvve~~~~A~~i~~~-~~~~~~V 593 (1154)
|+.|++|+++||++.++|+.++|. +.++++|
T Consensus 548 ylKeqr~~~~TFlPld~i~v~~~~e~lr~~~g~rlv~Dvi~ye~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r~k~v 627 (1141)
T KOG0018|consen 548 YLKEQRLEPMTFLPLDSIRVKPVNEKLRELGGVRLVIDVINYEPEYEKAVQFACGNALVCDSVEDARDLAYGGEIRFKVV 627 (1141)
T ss_pred HHHHhccCCccccchhhhhcCcccccccCcCCeEEEEEecCCCHHHHHHHHHHhccceecCCHHHHHHhhhcccccceEE
Confidence 899999999999999999999995 4568999
Q ss_pred eeCCeEeecCceeeccCCCCcCcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHhhHHHHHHHHHHHHHH
Q 036401 594 TVDGILLTKAGTMTGGTTGGMEARSKQWDDKKIEGLKRKKEQYESELEELGSIREMQLRESETSGKISGLEKKIQYAEIE 673 (1154)
Q Consensus 594 tl~G~~~~~~G~~tgg~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~~~~~~~l~~~i~~l~~~l~~l~~e 673 (1154)
|+||++++.+|.||||+++ .. |+...++.|....+.+..++.++.. .. ...+..+..+..++..+.....+
T Consensus 628 aldGtl~~ksGlmsGG~s~-----~~-wdek~~~~L~~~k~rl~eel~ei~~-~~--~e~~~v~~~i~~le~~~~~~~~~ 698 (1141)
T KOG0018|consen 628 ALDGTLIHKSGLMSGGSSG-----AK-WDEKEVDQLKEKKERLLEELKEIQK-RR--KEVSSVESKIHGLEMRLKYSKLD 698 (1141)
T ss_pred EeeeeEEeccceecCCccC-----CC-cCHHHHHHHHHHHHHHHHHHHHHHH-hh--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999885 23 9999999999999999999999887 22 26778888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhCCcchHHHHHHHHHH
Q 036401 674 KRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKIDRRTTDINKLERRINEITDRLYRDFSESVGVANIREYEENQLKA 753 (1154)
Q Consensus 674 l~~l~~~l~~l~~el~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~ 753 (1154)
+..+...+.....++......+..+..++..+...+...+..+++|+.+.+.+++.+|.+||..+++. +.+|++...
T Consensus 699 ~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~-ir~Yee~~~-- 775 (1141)
T KOG0018|consen 699 LEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR-IREYEEREL-- 775 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee-eehHHHHHH--
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 999998775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 036401 754 AQNVAEERLNLSNQLAKLKYQLEYEQKRDVESRIKKLESSLSTLENDLKQVKKKEGDVKSATETATGDITRWKEEMRGWK 833 (1154)
Q Consensus 754 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~ 833 (1154)
.+.....+.++..++..++.++.+..-++...+++.++..+.+++.+++.++.....+...+..+ .+++. .. .
T Consensus 776 ~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-----k~-k 848 (1141)
T KOG0018|consen 776 QQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-----KN-K 848 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-----HH-H
Confidence 66667778899999999999988886678888899999999999888888888777777666666 44443 11 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCCCCCc
Q 036401 834 SNSDECEKEIQEWEKQASAATTSLSKLNRQINSKEAQIEQLISRKQEIMEKCELECIVLPTVEDPMETDSSSPGPVFDFS 913 (1154)
Q Consensus 834 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1154)
........++.+....+..+.+++..+..++..++..++++..++.+++..|.+++|.+|+..+++++... ...+||+
T Consensus 849 ~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~--~ieidy~ 926 (1141)
T KOG0018|consen 849 SKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVI--GIEIDYS 926 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccccce--ecccccc
Confidence 66777888899999999999999999999999999999999999999999999999999998776643211 4578999
Q ss_pred ccchhhhhcCchhHHhhhHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 914 QLNRSYLQERRPSEREKLEVEFKQKMDALISEIEKTAPNLKALDQYEALLEKERTVTEEFEAARKEEKQAADAYNSVKQK 993 (1154)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~n~~a~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 993 (1154)
.||..|. ++.+|.+....|+++.||++|++.|+.++ +..+..+++.+++....+...|+.++.+
T Consensus 927 ~L~~~y~--------------L~~kl~e~~~~l~~~~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F~~VK~~ 990 (1141)
T KOG0018|consen 927 GLPREYK--------------LQQKLEEKQSVLNRIAPNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAFNKVKKK 990 (1141)
T ss_pred cccHHHH--------------HHHHHHHHHHHHHHhCcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998763 78899999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHH
Q 036401 994 RYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALL 1073 (1154)
Q Consensus 994 ~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~ 1073 (1154)
|..+|+.||++|+.++..+|..|| |. .|.|+|.++++++||.+||.|.++||+|+|+++.+||||||+++||||+
T Consensus 991 R~~~F~~~F~~va~~Id~IYK~Lt---nt--~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~m~~LSGGEKTvAaLALL 1065 (1141)
T KOG0018|consen 991 RYERFMACFEHVADNIDRIYKELT---NT--EGQAYLGLENPEEPYLDGIKYHCMPPGKRFRPMDNLSGGEKTVAALALL 1065 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---cc--ccceeecCCCCCcchhcCccccccCCccccCchhhcCccHHHHHHHHHH
Confidence 999999999999999999999998 22 4899999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEeecCC
Q 036401 1074 FSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1074 ~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~~~~~ 1152 (1154)
||+|.|+||||+||||+|||||..|+.+|+.||+ - ++.||||||.++.+|..||.|+|||.+++
T Consensus 1066 Faihsy~PaPFfvlDEiDAALDntNi~kvasyIr-~--------------~~~Q~IvISLK~~~y~kadaLVGvyr~~~ 1129 (1141)
T KOG0018|consen 1066 FAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR-S--------------SNFQFIVISLKEEFYQKADALVGVYRDQE 1129 (1141)
T ss_pred HHhccCCCCCceehhhHHHHhhhccHHHHHHHHh-c--------------CCceEEEEeccHHHhhhhhceeeeccCcc
Confidence 9999999999999999999999999999999999 2 58999999999999999999999999854
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.3e-120 Score=1156.78 Aligned_cols=1076 Identities=27% Similarity=0.455 Sum_probs=754.8
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-ccccccchhhhcccchhhhcccceE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLKDLIYAYDDKEKEQKGRRA 86 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~~~~~~I~~g~~~~~~~~~~~a 86 (1154)
|+|++|++.|||||+++++++|.+|||+||||||||||||+|||+||||.++.+ +|+++|.||||.|+. .+++.+.|
T Consensus 1 m~lk~i~l~gFKSF~~~~~i~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~--~r~~~~~A 78 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEINFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSG--NRKPANYA 78 (1163)
T ss_pred CeeeEEEEECcccCCCCeeeecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCC--CCCCCCce
Confidence 689999999999999988888888899999999999999999999999999775 999999999999964 36677789
Q ss_pred EEEEEEEeCCC------ceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHH
Q 036401 87 FVRLVYQLGNE------SELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKEL 160 (1154)
Q Consensus 87 ~v~~~~~~~~~------~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~ 160 (1154)
+|+++|+|.++ .+|+|+|+++++|+|.|+|||+.|+++||.++|.++||++.++ +||+||+|++|++|+|.+|
T Consensus 79 ~V~l~fdN~d~~~~~~~~ei~v~Rri~r~g~S~Y~INg~~~~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~~kp~er 157 (1163)
T COG1196 79 EVELTFDNSDNTLPLEYEEISVTRRIYRDGESEYYINGEKVRLKDIQDLLADSGIGKESY-SIVSQGKVEEIINAKPEER 157 (1163)
T ss_pred EEEEEEeCCCCcCCcccceEEEEEEEEEcCCcEEEECCcEeeHHHHHHHHHhcCCCCCCC-ceeecccHHHHHcCCHHHH
Confidence 99999999862 4899999999999999999999999999999999999999998 8899999999999999999
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 036401 161 TALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAERHLRLQDQLKSLKKEHFLWQLFNI 240 (1154)
Q Consensus 161 ~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~~~~~~~~el~~l~~~~~~~~l~~~ 240 (1154)
+.+||+++|+..|+.++.++...++.+.+++....+.+..+..++++|+.+++.+.+|..+..+++.+...+.++++..+
T Consensus 158 r~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~ 237 (1163)
T COG1196 158 RKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKEL 237 (1163)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhhHHHHHHHHHHH
Q 036401 241 EKDITKASKDLEAEKRSREEVMRELEHFEDQKRGKRKELAKYLKEIAQCEKKIAERNNRLDKSQPELLKLNEEMSRINSK 320 (1154)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~~~~i~~~~~~ 320 (1154)
...+..+...+..+...+..+...+.....++..+...+..+...+..+......+...+..+..++..+..++..+...
T Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~ 317 (1163)
T COG1196 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888888888877777777777666666655555666555555565555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHhhhhHHHHHHHHH
Q 036401 321 IKSSKKELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSRDGAGRLPLLDTQLTEYFQIKEEAGMKTAKLRDEKEV 400 (1154)
Q Consensus 321 i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 400 (1154)
.......+..+...+......+.........+......+.....+.. ................++..+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~----------~~~~~~~~~~~~~~~~~~~~~~~ 387 (1163)
T COG1196 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE----------EKLSALLEELEELFEALREELAE 387 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhhHHHHHHHHHHHHHH
Confidence 55555555555555555555555443333333333333322222110 00111112223333445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 401 LDREQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELRSMQDKHRDSRQKYENLKS 480 (1154)
Q Consensus 401 l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~ 480 (1154)
+..+.....+++..++.+++.+..++..+...+..+..++..+...+..+...+..+...+..+...++.+...+..+..
T Consensus 388 ~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 467 (1163)
T COG1196 388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELER 467 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHH----HHHHHHHHHhhhcCCcceecccccccCchhHHHHHHHhhccCCCeE
Q 036401 481 KIGEIENQLRELKADRHE-------NERDA----KLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAV 549 (1154)
Q Consensus 481 ~l~~l~~~l~~l~~~~~~-------~~~~~----~~~~~l~~l~~~~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~i 549 (1154)
.+..+...+..+...... ..... .....+......++||+|+|+++++++ ++|..||++++|+.+++|
T Consensus 468 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G~v~~li~v~-~~y~~Aie~alG~~l~~v 546 (1163)
T COG1196 468 ELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVK-EKYETALEAALGNRLQAV 546 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccchHHHhcCcC-hHHHHHHHHHcccccCCe
Confidence 444444333333332222 11111 112233333334899999999999996 599999999999999999
Q ss_pred EecChhhHHHHHH------------------------------------------------HHHHHhCCeEecCChHHHH
Q 036401 550 VVEDENTGKECIK------------------------------------------------AVLFAVGNTLVCDGLDEAK 581 (1154)
Q Consensus 550 Vvd~~~~a~~~i~------------------------------------------------ai~~~lg~~lvve~~~~A~ 581 (1154)
||++..+|..|+. +|.++||+++||+|++.|+
T Consensus 547 VV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~~A~ 626 (1163)
T COG1196 547 VVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQAR 626 (1163)
T ss_pred eeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhcCCHHHHHHHHHHhCCeEEecCHHHHH
Confidence 9999999998887 6889999999999999999
Q ss_pred hhhc-cCCceeEEeeCCeEeecCceeeccCCCCcCcccccCCHHHHHHHHHHHHHHHHHHHHHhh-hhHHhHHHHHHHhh
Q 036401 582 VLSW-SGERFRVVTVDGILLTKAGTMTGGTTGGMEARSKQWDDKKIEGLKRKKEQYESELEELGS-IREMQLRESETSGK 659 (1154)
Q Consensus 582 ~i~~-~~~~~~~Vtl~G~~~~~~G~~tgg~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~-~~~~~~~~~~l~~~ 659 (1154)
.+++ .++++++||++|+++.++|+||||+....+ ......++..+..++..+...+..+.. +......+..+...
T Consensus 627 ~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~~~~---~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1163)
T COG1196 627 RLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRS---SLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDL 703 (1163)
T ss_pred HHHHhcCCCceEEecCCcEEeCCeeeecCCccccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 457889999999999999999999433221 122222444455555555544444333 22222223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhC
Q 036401 660 ISGLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKIDRRTTDINKLERRINEITDRLYRDFSESVG 739 (1154)
Q Consensus 660 i~~l~~~l~~l~~el~~l~~~l~~l~~el~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~i~~l~~~~~~~~~~~~~ 739 (1154)
+..+...+..+..++..+...+..+..+...+...+..+...+..+...+..+..++..+...+..+.... ..+..
T Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~--- 779 (1163)
T COG1196 704 LEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL-AKLKE--- 779 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---
Confidence 33333333333333333333333333333333333333333333333333333333333333333322222 00000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 740 VANIREYEENQLKAAQNVAEERLNLSNQLAKLKYQLEYE--QKRDVESRIKKLESSLSTLENDLKQVKKKEGDVKSATET 817 (1154)
Q Consensus 740 ~~~~~~~e~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 817 (1154)
.+..+.. ........+..+...+......+... .+.........+..++..+..++..+..++..+...+..
T Consensus 780 --~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~ 853 (1163)
T COG1196 780 --EIEELEE----KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEE 853 (1163)
T ss_pred --HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0111110 11111122222222222222111000 122233334455555555555666666666666666666
Q ss_pred HHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 036401 818 ATGDITRWKEEMRGWKSNSDECEKEIQEWEKQASAATTSLSKLNRQINSKEAQIEQLISRKQEIMEKCELECIVLPTVED 897 (1154)
Q Consensus 818 ~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~ 897 (1154)
++..+..+...+..+......+...+.........+...+..+...+..+...+..+......+...+......++....
T Consensus 854 ~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 933 (1163)
T COG1196 854 LEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEE 933 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666655554433333211111111000
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhcCchhHHhhhHHHHHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHH
Q 036401 898 PMETDSSSPGPVFDFSQLNRSYLQERRPSEREKLEVEFKQKMDALISEIEKTAP-NLKALDQYEALLEKERTVTEEFEAA 976 (1154)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~-n~~a~e~~~~~~~~~~~~~~~~~~l 976 (1154)
.+ .++ .+. ....+ ++.++..++..|..+|| |+.|+++|+++.++|.++..+++++
T Consensus 934 ~~----------~~~--~~~--------~~~~~----~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl 989 (1163)
T COG1196 934 EL----------EEE--YED--------TLETE----LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDL 989 (1163)
T ss_pred hh----------ccc--ccc--------chhHH----HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 000 00113 78899999999999997 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCCCCCCCcccceeecCCCCcccc
Q 036401 977 RKEEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRD 1056 (1154)
Q Consensus 977 ~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1154)
..++..+.+.|.+++..+...|+.+|..|+.+|+.+|..| |+ ||.+.|.+.++++||.+|+.+.+.||++++++
T Consensus 990 ~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L-----~~-GG~a~L~l~~~dd~l~~Giei~a~ppgK~~~~ 1063 (1163)
T COG1196 990 EEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKEL-----FG-GGTAELELTEPDDPLTAGIEISARPPGKKLQS 1063 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CC-CCeeEEEeCCCCchhhcCcEEEEECCCCCccc
Confidence 9999999999999999999999999999999999999999 77 99999999999999999999999999999999
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
++.||||||+++||||+||+|+|+|+|||||||||||||+.|+.+++.||+++ + .++|||||||++.
T Consensus 1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~------------s-~~sQFIvIThr~~ 1130 (1163)
T COG1196 1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEM------------S-KETQFIVITHRKG 1130 (1163)
T ss_pred hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHh------------C-cCCeEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999 3 8999999999999
Q ss_pred HHHhccceEEEeecC-CC
Q 036401 1137 FYDKAEALVGVYRDS-DR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~-~~ 1153 (1154)
||..||++|||||.. |.
T Consensus 1131 ~m~~ad~l~GVtm~~~Gv 1148 (1163)
T COG1196 1131 TMEAADRLVGVTMQEKGV 1148 (1163)
T ss_pred HHHHHHHHeeeEeecCCc
Confidence 999999999999998 64
No 3
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.6e-114 Score=983.61 Aligned_cols=1086 Identities=26% Similarity=0.416 Sum_probs=710.0
Q ss_pred CceeEEEEecceeccCceeecCCCC-eEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSD-FTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRA 86 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~-~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a 86 (1154)
.+|..|.++|||||+|.+++|||++ ||+||||||||||||+|||.||||.++.++|.+++++|||+++ +.++..+|
T Consensus 84 L~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~kiR~~klS~LIh~S~---~~~~l~SC 160 (1293)
T KOG0996|consen 84 LMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKIRSKKLSALIHKSD---GHPNLQSC 160 (1293)
T ss_pred eeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhHHhHHHHHHHHhccC---CCCCCcce
Confidence 4789999999999999999999997 9999999999999999999999999999999999999999864 35667789
Q ss_pred EEEEEEEeC-----------CCceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcC
Q 036401 87 FVRLVYQLG-----------NESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASK 155 (1154)
Q Consensus 87 ~v~~~~~~~-----------~~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~ 155 (1154)
.|+++|+.. +|.+++|+|+.++++.|.|+|||+.+++++|..+|...||+++++.|||.||+|++|+.|
T Consensus 161 sV~vhFq~iiD~~~~~~E~vp~s~~~ItRtA~~~NsSkY~Ingk~as~~~V~~lLk~~gIDleHNRFLILQGEVE~IA~M 240 (1293)
T KOG0996|consen 161 SVEVHFQKIIDKPGGTYEVVPDSEFTITRTAFRDNSSKYYINGKEASFKDVTKLLKSHGIDLEHNRFLILQGEVEQIAMM 240 (1293)
T ss_pred eEEEeeeeeeccCCCceeecCCCeeEEEehhhhCCCceEeECCccccHHHHHHHHHhcCCCCccceeeeehhhHHHHHhc
Confidence 999999632 246899999999999999999999999999999999999999999999999999999999
Q ss_pred Cc-------hHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 156 NP-------KELTALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAERHLRLQDQLKSL 228 (1154)
Q Consensus 156 ~p-------~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~~~~~~~~el~~l 228 (1154)
+| .-..+++|++.|+.+|+..++....++..+.+....+..+++-...+...++..+..|..|+....++-..
T Consensus 241 KPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~ 320 (1293)
T KOG0996|consen 241 KPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRK 320 (1293)
T ss_pred CCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99 56889999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH
Q 036401 229 KKEHFLWQLFNIEKDITKASKDLEAEKRSREEVMRELE-HFEDQKRGKRKELAKYLKEIAQCEKKIAERNNRLDKSQPEL 307 (1154)
Q Consensus 229 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~ 307 (1154)
...+....+......+....+.+..+...+........ ......+..+..-..+......+......+......+..+-
T Consensus 321 ~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~ 400 (1293)
T KOG0996|consen 321 KNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLERED 400 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555566566666666666666666555554444 22222333333333333344444445555666666666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHH
Q 036401 308 LKLNEEMSRINSKIKSSKKELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSRDGAGRLPLLDTQLTEYFQIKEEA 387 (1154)
Q Consensus 308 ~~~~~~i~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 387 (1154)
...++.++.+.+++..+..+++.....+..++...+.....+..++.++..+......... .+. ..+..+......+
T Consensus 401 vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~--~l~-e~~~~l~~~t~~~ 477 (1293)
T KOG0996|consen 401 VKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEER--ELD-EILDSLKQETEGI 477 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHhhhhhhh
Confidence 6666666666666666666666666666666655555555555555555555443322100 000 0011111111112
Q ss_pred hhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 036401 388 GMKTAKLRDEKEVLDREQHA-------DLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKE 460 (1154)
Q Consensus 388 ~~~~~~~~~~l~~l~~~~~~-------~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 460 (1154)
..+...++.++..+..++.. .+.++..+....+.....+..++..+......+.+....+..+...+...+.+
T Consensus 478 ~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e 557 (1293)
T KOG0996|consen 478 REEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQE 557 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 22222222333333332222 33333333333333333344444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCcceecccccccCchhHHHHH
Q 036401 461 LRSMQDKHRDSRQKYENLKSKIGEIENQLRELKADRHENERDAKLSQAVETLKR--LFQGVHGRMTDLCRPTQKKYNLAV 538 (1154)
Q Consensus 461 l~~l~~~~~~l~~~~~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~l~~l~~--~~~gv~g~l~~l~~~~~~~~~~av 538 (1154)
+.....++..+......+...+..+..++.+++...............|..++. .+||++|+|+||..+ |++|.+|+
T Consensus 558 ~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~I-d~kYDvAI 636 (1293)
T KOG0996|consen 558 LKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAI-DEKYDVAI 636 (1293)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCcccccccccccc-chHHHHHH
Confidence 444444444444444445445555555555555444333223334445555554 579999999999887 68999999
Q ss_pred HHhhccCCCeEEecChhhHHHHHH--------------------------------------------------HHHHHh
Q 036401 539 TVAMGKFMDAVVVEDENTGKECIK--------------------------------------------------AVLFAV 568 (1154)
Q Consensus 539 ~~~lG~~l~~iVvd~~~~a~~~i~--------------------------------------------------ai~~~l 568 (1154)
.++| +.|++||||+.++|..||. ||+++|
T Consensus 637 sTac-~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~r~aFYfaL 715 (1293)
T KOG0996|consen 637 STAC-ARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKFRPAFYFAL 715 (1293)
T ss_pred HHhc-cccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHHHHHHHHHH
Confidence 9965 5799999999999999997 899999
Q ss_pred CCeEecCChHHHHhhhccCCc-eeEEeeCCeEeecCceeeccCCCCcCcc---cc---cCCHHHHHHHHHHHHHHHHHHH
Q 036401 569 GNTLVCDGLDEAKVLSWSGER-FRVVTVDGILLTKAGTMTGGTTGGMEAR---SK---QWDDKKIEGLKRKKEQYESELE 641 (1154)
Q Consensus 569 g~~lvve~~~~A~~i~~~~~~-~~~Vtl~G~~~~~~G~~tgg~~~~~~~~---~~---~~~~~~i~~l~~~~~~l~~~l~ 641 (1154)
++|+||++++.|.+|+|.+.+ +|+||++|.+|+++|+||||+.....++ .. .........+...+........
T Consensus 716 rdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~ 795 (1293)
T KOG0996|consen 716 RDTLVADNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKAR 795 (1293)
T ss_pred hhhhhhcCHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999995444 8999999999999999999975443321 11 1223344555555554444444
Q ss_pred HHhh-hhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHH
Q 036401 642 ELGS-IREMQLRESETSGKISGLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRI---KPDLQKLKDKIDRRTTDIN 717 (1154)
Q Consensus 642 ~l~~-~~~~~~~~~~l~~~i~~l~~~l~~l~~el~~l~~~l~~l~~el~~~~~~l~~~---~~~l~~~~~~i~~l~~~i~ 717 (1154)
.+.. +.........+...++.++..+..+..+...+...++.+...+..++...... ...+..++..+..++.++.
T Consensus 796 ~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e 875 (1293)
T KOG0996|consen 796 QHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVE 875 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 4433 23333444555556666666666666666555555555555555554442211 1112222233333333333
Q ss_pred HH------HHHHHHHHHHHHHHhHhhhCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHH
Q 036401 718 KL------ERRINEITDRLYRDFSESVGVANIREYEENQLKAAQNVAEERLNLSNQLAKLKYQLEYE--QKRDVESRIKK 789 (1154)
Q Consensus 718 ~l------~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~~~~~~~~~ 789 (1154)
.+ .+++..+...+..-+.. . +. .+.........++..+...+..+...+... .+..++..+..
T Consensus 876 ~~qe~~~Kk~~i~~lq~~i~~i~~e-----~---~q-~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~ 946 (1293)
T KOG0996|consen 876 ELQEKAAKKARIKELQNKIDEIGGE-----K---VQ-AQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSE 946 (1293)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhhch-----h---hH-HhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHH
Confidence 33 13333333333111100 0 01 111122233334444444444443332221 12223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 036401 790 LESSLSTLENDLKQVKKKEGDVKSATETATGDITRWKEEMRGWKSNSDECEKEIQEWEKQASAA-------TTSLSKLNR 862 (1154)
Q Consensus 790 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~ 862 (1154)
++..+...+.+++.+......+.....+++.++....+.+.++...+..+...++.......++ ...+.....
T Consensus 947 le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~ 1026 (1293)
T KOG0996|consen 947 LEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAING 1026 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3333333333333333333332222222222222222222222222222222222222222222 222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCC-CCCCCCcccchhhhhcCchhHHhhhHHHHHHHHHH
Q 036401 863 QINSKEAQIEQLISRKQEIMEKCELECIVLPTVEDPMETDSSSP-GPVFDFSQLNRSYLQERRPSEREKLEVEFKQKMDA 941 (1154)
Q Consensus 863 ~~~~l~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 941 (1154)
++..++..+......... +.-|.+ + +..+.+ ....+++.+...+ .+.. +-..+.-
T Consensus 1027 ~l~e~~~~~~~~~k~~~~-l~~~~~-------t-----E~~~~~~~~~~~~Eeleae~-------~~~~----i~e~i~~ 1082 (1293)
T KOG0996|consen 1027 ELNEIESKIKQPEKELKK-LSLCNM-------T-----ETRPQIELDVESPEELEAEM-------LEDN----INEKIAL 1082 (1293)
T ss_pred HHHHHHhhhhhHHHhhCc-cccccc-------h-----hhccccccccCChHHHHhhh-------cHhh----HHHHHHH
Confidence 222222222222111110 000111 0 000000 0011122221111 0112 4556888
Q ss_pred HHHHHhhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 036401 942 LISEIEKT-APNLKALDQYEALLEKERTVTEEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSN 1020 (1154)
Q Consensus 942 l~~~i~~l-~~n~~a~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~ 1020 (1154)
++..++.+ .||++++.+|......|..-...++.....+++.++.+..+...|.+.||..|..|+.....+|+.+|
T Consensus 1083 lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmIT--- 1159 (1293)
T KOG0996|consen 1083 LEKRVEELREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMIT--- 1159 (1293)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 99999999 68999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCceEEEeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHH
Q 036401 1021 THPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVA 1100 (1154)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~ 1100 (1154)
+||.|.|.+.+..+||..||.|+|+||.|.|+.+..||||||++++|||+||||+|+|+|||||||+|||||..|+.
T Consensus 1160 ---~GGdAeLElVDslDPFseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVS 1236 (1293)
T KOG0996|consen 1160 ---LGGDAELELVDSLDPFSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVS 1236 (1293)
T ss_pred ---cCCcceeEeeccCCCcccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccch
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEeecCCC
Q 036401 1101 KVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1101 ~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~~~~~~ 1153 (1154)
.|+.||++. + .+.||||||.+..||+.||+|+|||+.+|.
T Consensus 1237 IVanYIkEr------------T-kNAQFIIISLRnnMFELa~rLvGIYKtdn~ 1276 (1293)
T KOG0996|consen 1237 IVANYIKER------------T-KNAQFIIISLRNNMFELANRLVGIYKTDNC 1276 (1293)
T ss_pred hHHHHHHHh------------c-cCCeEEEEEehhhHHHHHhhheeeEeecCc
Confidence 999999998 4 899999999999999999999999998874
No 4
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-101 Score=862.82 Aligned_cols=1058 Identities=22% Similarity=0.354 Sum_probs=648.0
Q ss_pred CceeEEEEecceeccCceee-cCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-ccccccchhhhcccchhhhcccce
Q 036401 8 GKIHRLELENFKSYKGLQII-GPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLKDLIYAYDDKEKEQKGRR 85 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i-~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~~~~~~I~~g~~~~~~~~~~~ 85 (1154)
|+|+.|.|.|||||+-+++| ||.+.||+|+|.||||||||||+||||||..+-+ +|++++.||||++. ..+...
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~G----QAGiTk 76 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNG----QAGITK 76 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcC----ccccee
Confidence 68999999999999999988 6655699999999999999999999999998765 89999999999853 234578
Q ss_pred EEEEEEEEeCC----------CceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcC
Q 036401 86 AFVRLVYQLGN----------ESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASK 155 (1154)
Q Consensus 86 a~v~~~~~~~~----------~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~ 155 (1154)
|.|+++|+|.+ .++|+|+|.|..+|.+.|+|||+.++...++++|.+.|+.+.+|+|+|+||+|+.+++|
T Consensus 77 AsVsVvFdNtdk~~SP~G~E~h~EIsVtRqIv~gG~~KylINGh~a~~~~vq~lF~SVqLNvNNP~FLIMQGrITkVLNM 156 (1174)
T KOG0933|consen 77 ASVSVVFDNTDKARSPLGYEHHDEISVTRQIVVGGTNKYLINGHLAQNSKVQDLFCSVQLNVNNPHFLIMQGRITKVLNM 156 (1174)
T ss_pred EEEEEEecCCCcccCCCCcccCCeeEEEEEEEecCceeEEEcCeeCchhHHHHHHHHhcccCCCCceEEecccchhhhcC
Confidence 99999999876 27999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 156 NPKELTALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKKRTVVLE-----RKQKKEQKEEAERHLRLQDQLKSLKK 230 (1154)
Q Consensus 156 ~p~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~e-----i~~lk~~~~~a~~~~~~~~el~~l~~ 230 (1154)
+|.+.+.++|++||+..|..+.+.+.+-+++-+.. ..+++.|..+ +.+|+..+.....|.....+++.+..
T Consensus 157 Kp~EILsMvEEAAGTrmye~kKe~A~ktiekKetK----lkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R 232 (1174)
T KOG0933|consen 157 KPSEILSMVEEAAGTRMYENKKEAAEKTIEKKETK----LKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSR 232 (1174)
T ss_pred CcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888777666654 3444444443 78999999999999999999999998
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhh
Q 036401 231 EHFLWQLFNIEKDITKASKDLEAEKRSREEVMRELEHFEDQKRGKRKELAKYLKE--------IAQCEKKIAERNNRLDK 302 (1154)
Q Consensus 231 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------l~~~~~~i~~~~~~l~~ 302 (1154)
.+..+++.............+......+..+.+.+.....++..++.++.++..+ +..+..++..+...+..
T Consensus 233 ~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr 312 (1174)
T KOG0933|consen 233 ICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITR 312 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH
Confidence 8888888887777777777777777777777777666666666666665555442 22333344444433333
Q ss_pred hchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHH
Q 036401 303 SQPELLKLNEEMSRINSKIKSSKKELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSRDGAGRLPLLDTQLTEYFQ 382 (1154)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 382 (1154)
....+......+...+.++..+...+.+....+...+..+.........+.....+.... .+.+..
T Consensus 313 ~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~--------------~e~~e~ 378 (1174)
T KOG0933|consen 313 EETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKL--------------LEKAEE 378 (1174)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH--------------HHHHHH
Confidence 333333333333333333333333333333333333333322222222222111111110 011111
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 036401 383 IKEEAGMKTAKLRDEKEVLDREQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELR 462 (1154)
Q Consensus 383 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 462 (1154)
.-..+..-.+.-...-..+..++..++..+..+. ..+....-.++.+..++...+.++.............+.
T Consensus 379 ~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~-------t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld 451 (1174)
T KOG0933|consen 379 LVESLTAGLSSNEDEEKTLEDQLRDAKITLSEAS-------TEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELD 451 (1174)
T ss_pred HHHHHhcccccCccchhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHH
Confidence 1001100000000011112222222222222222 222222222222222233333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----h----------c--CCcceec
Q 036401 463 SMQDKHRDSRQKYENLKSKIG---EIENQLRELKADRHENERDAKLSQAVETLKR----L----------F--QGVHGRM 523 (1154)
Q Consensus 463 ~l~~~~~~l~~~~~~l~~~l~---~l~~~l~~l~~~~~~~~~~~~~~~~l~~l~~----~----------~--~gv~g~l 523 (1154)
..+.+.+.++.++..+..... .+......+..... ++.+.+..+.. + | ..|+|.|
T Consensus 452 ~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~------~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~V 525 (1174)
T KOG0933|consen 452 ALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIG------RLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLV 525 (1174)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhcccccccCCCCccchHHHHHHHH
Confidence 333333333333333322211 12222222222111 12222222222 0 1 1489999
Q ss_pred ccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHH-----------------------------------------
Q 036401 524 TDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIK----------------------------------------- 562 (1154)
Q Consensus 524 ~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~----------------------------------------- 562 (1154)
+.|+.+.+..|..|++.+.|+.|.+|||++.++++.++.
T Consensus 526 a~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al 605 (1174)
T KOG0933|consen 526 AKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELAL 605 (1174)
T ss_pred HHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhcccccceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHH
Confidence 999999999999999999999999999999999988776
Q ss_pred -----------HHHHHhCCeEecCChHHHHhhhcc-CCceeEEeeCCeEeecCceeeccCCCCcCcccccCCHHHHHHHH
Q 036401 563 -----------AVLFAVGNTLVCDGLDEAKVLSWS-GERFRVVTVDGILLTKAGTMTGGTTGGMEARSKQWDDKKIEGLK 630 (1154)
Q Consensus 563 -----------ai~~~lg~~lvve~~~~A~~i~~~-~~~~~~Vtl~G~~~~~~G~~tgg~~~~~~~~~~~~~~~~i~~l~ 630 (1154)
|+.|+||+++||+|++.|+.|+|. ..+.+.||++|++|+|+|.+|||+.+... .....-..+..+.
T Consensus 606 ~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a--~~L~~l~~l~~~~ 683 (1174)
T KOG0933|consen 606 SLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGA--DLLRQLQKLKQAQ 683 (1174)
T ss_pred HHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcc--cHHHHHHHHHHHH
Confidence 899999999999999999999993 34557799999999999999999875432 1111222233333
Q ss_pred HHHHHHHHHHHHHhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 036401 631 RKKEQYESELEELGSIREMQLRESETSGKISGLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKID 710 (1154)
Q Consensus 631 ~~~~~l~~~l~~l~~~~~~~~~~~~l~~~i~~l~~~l~~l~~el~~l~~~l~~l~~el~~~~~~l~~~~~~l~~~~~~i~ 710 (1154)
.++.....++..+.. ....+.........+..++.....++.-+..+++.-. ...+...+..+...+......|.
T Consensus 684 ~~~~~~q~el~~le~---eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e--~~~~~~~~~~~~e~v~e~~~~Ik 758 (1174)
T KOG0933|consen 684 KELRAIQKELEALER---ELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNE--FHKLLDDLKELLEEVEESEQQIK 758 (1174)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--HhhHHHHHHHHHHHHHHHHHHHH
Confidence 322222222222222 0011111122233333333333333333333322111 12222333333333333333343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhCCcchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHH
Q 036401 711 RRTTDINKLERRINEITDRLYRDFSESVGVANIREYEENQLKAAQNVAEERLNLSNQ---LAKLKYQLEYEQKRDVESRI 787 (1154)
Q Consensus 711 ~l~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~---l~~l~~~~~~~~~~~~~~~~ 787 (1154)
.....++..+.++..++..+.......- ..+.+++..+....+...+....++.. ...+.. ....+...+
T Consensus 759 e~~~~~k~~~~~i~~lE~~~~d~~~~re--~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~l-----E~e~l~~e~ 831 (1174)
T KOG0933|consen 759 EKERALKKCEDKISTLEKKMKDAKANRE--RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQL-----EHEELEKEI 831 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 3333344444444333332211000000 011111111111111111111111100 000000 112233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 788 KKLESSLSTLENDLKQVKKKEGDVKSATETATGDITRWKEEMRGWKSNSDECEKEIQEWEKQASAATTSLSKLNRQINSK 867 (1154)
Q Consensus 788 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 867 (1154)
...+..+..+...+..+..++..+...+.........++.++.........+..++..+.........+.....-.+..+
T Consensus 832 ~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkl 911 (1174)
T KOG0933|consen 832 SSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKL 911 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHH
Confidence 44444444444444444444444444444444444444444444444444444444333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCC---CCCCCCcccchhhhhcCchhHHhhhHHHHHHHHHHHHH
Q 036401 868 EAQIEQLISRKQEIMEKCELECIVLPTVEDPMETDSSSP---GPVFDFSQLNRSYLQERRPSEREKLEVEFKQKMDALIS 944 (1154)
Q Consensus 868 ~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 944 (1154)
..++..+..+.........--.-..++.. +....+ +..+||+... +.+ ...++..++.
T Consensus 912 e~e~~~~~~e~~~~~k~v~~l~~k~~wi~----~ek~~fgk~gt~yDf~~~~-----------p~~----are~l~~Lq~ 972 (1174)
T KOG0933|consen 912 EHEVTKLESEKANARKEVEKLLKKHEWIG----DEKRLFGKKGTDYDFESYD-----------PHE----AREELKKLQE 972 (1174)
T ss_pred HhHHHHhhhhHHHHHHHHHHHHHhccchh----HHHHhhcCCCCccccccCC-----------HhH----HHHHHHHhhH
Confidence 33333333322222111100000001100 000011 2356666432 223 6778888998
Q ss_pred HHhhcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 036401 945 EIEKTA--PNLKALDQYEALLEKERTVTEEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTH 1022 (1154)
Q Consensus 945 ~i~~l~--~n~~a~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~ 1022 (1154)
....++ .|+.+..-++..++++..+....+.+...+..+.+.|..+++.....+..++.+|+..|..+|..| .
T Consensus 973 k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs~L-----L 1047 (1174)
T KOG0933|consen 973 KKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFSTL-----L 1047 (1174)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-----C
Confidence 888887 499999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCCceEEEeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHH
Q 036401 1023 PLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKV 1102 (1154)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~ 1102 (1154)
| |..|.|...+ ...+..|+++.|..++.+..+++.||||+||+|||||+||+..|+|+|||||||+|||||-.....|
T Consensus 1048 P-ga~AkL~Ppe-g~~~~dGLEvkV~~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNI 1125 (1174)
T KOG0933|consen 1048 P-GAMAKLEPPE-GKTVLDGLEVKVKFGGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNI 1125 (1174)
T ss_pred C-CccccccCCC-CCccccceEEEEEeCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhH
Confidence 8 8888887654 4468889999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEeecCCC
Q 036401 1103 AGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1103 ~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~~~~~~ 1153 (1154)
..||+.. .+++||||||.+..||..||+||-++-.+|.
T Consensus 1126 G~mIkth-------------F~~sQFIVVSLKeGMF~NANvLFrtrF~DG~ 1163 (1174)
T KOG0933|consen 1126 GRMIKTH-------------FTHSQFIVVSLKEGMFNNANVLFRTRFVDGV 1163 (1174)
T ss_pred HHHHHhh-------------CCCCeEEEEEchhhccccchhhheeeeecCc
Confidence 9999988 4899999999999999999999998877774
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=3.8e-96 Score=971.48 Aligned_cols=1085 Identities=26% Similarity=0.415 Sum_probs=667.9
Q ss_pred ceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-ccccccchhhhcccchhhhcccceEE
Q 036401 9 KIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 9 ~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
+|++|.|.|||||.+.+.|+|.+|||+|+||||||||||||||+||||+.++. +|+.++.++||.|.. +.+...|+
T Consensus 1 ~i~~l~l~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~---~~~~~~~~ 77 (1164)
T TIGR02169 1 YIERIELENFKSFGKKKVIPFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKN---GQSGNEAY 77 (1164)
T ss_pred CeeEEEEeCeeeECCeeEEeecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhccccc---CCCCceEE
Confidence 58999999999999877787667799999999999999999999999998764 899999999998532 23566899
Q ss_pred EEEEEEeCCCc---eEEEEEEEec--CCC-eEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHH
Q 036401 88 VRLVYQLGNES---ELQFTRTITS--SGG-SEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELT 161 (1154)
Q Consensus 88 v~~~~~~~~~~---~~~i~R~i~~--~g~-s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~ 161 (1154)
|.++|.++++. ++.|+|+++. +|. +.|++||++|+.++|.++|..+||++.+++ +|+||+|+.|+.++|.+|+
T Consensus 78 v~~~f~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~~-~~~qg~~~~~~~~~~~~r~ 156 (1164)
T TIGR02169 78 VTVTFKNDDGKFPDELEVVRRLKVTDDGKYSYYYLNGQRVRLSEIHDFLAAAGIYPEGYN-VVLQGDVTDFISMSPVERR 156 (1164)
T ss_pred EEEEEEcCCCCCCCcEEEEEEEEEcCCCCcceEEECCccccHHHHHHHHHHcCCCcCcce-EEecchHHHHHCCCHHHHH
Confidence 99999877543 5888888765 566 789999999999999999999999998766 5889999999999999999
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 036401 162 ALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAERHLRLQDQLKSLKKEHFLWQLFNIE 241 (1154)
Q Consensus 162 ~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~~~~~~~~el~~l~~~~~~~~l~~~~ 241 (1154)
.+|++++|+..|...+..+...+.++..++......+..+..++..++..++.+.+|..+...+........+..+..+.
T Consensus 157 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 236 (1164)
T TIGR02169 157 KIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALE 236 (1164)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887777666666666666666666666666666666555444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhchhHhhHHHHHHHHHHH
Q 036401 242 KDITKASKDLEAEKRSREEVMRELEHFEDQKRGKRKELAKYLKEIAQCE-KKIAERNNRLDKSQPELLKLNEEMSRINSK 320 (1154)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~i~~~~~~l~~~~~~~~~~~~~i~~~~~~ 320 (1154)
..+..+...+..+..++..+..++..+...+..+...+..+...+..+. ..+..+...+..+...+..+...+..+..+
T Consensus 237 ~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1164)
T TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444443333321 222223333333333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHhhhhHHHHHHHHH
Q 036401 321 IKSSKKELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSRDGAGRLPLLDTQLTEYFQIKEEAGMKTAKLRDEKEV 400 (1154)
Q Consensus 321 i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 400 (1154)
+..+...+..+...+..+...+..+..++..+...+..+...+................+......+......+..++..
T Consensus 317 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 396 (1164)
T TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333333333333333333333333333222211100000000111111111122223333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 401 LDREQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELRSMQDKHRDSRQKYENLKS 480 (1154)
Q Consensus 401 l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~ 480 (1154)
+..++..+...+..+..++..+...+..+...+..+...+..+...+..+...+..+..++..+...+..+...+..+..
T Consensus 397 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~ 476 (1164)
T TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHH-hhhcCCcceecccccccCchhHHHHHHHhhccCCCeEEec
Q 036401 481 KIGEIENQLRELKADRHENERDA-K------LSQAVETL-KRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVE 552 (1154)
Q Consensus 481 ~l~~l~~~l~~l~~~~~~~~~~~-~------~~~~l~~l-~~~~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd 552 (1154)
.+..+..++..+........... . ....+..+ ...++|++|+|+++|.++ +.|..||++++|.++++|||+
T Consensus 477 ~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~g~~g~l~dli~v~-~~y~~Aie~~lg~~l~~ivv~ 555 (1164)
T TIGR02169 477 EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVG-ERYATAIEVAAGNRLNNVVVE 555 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhcCCCCceecHHHhcCcC-HHHHHHHHHHhhhhhCCEEEC
Confidence 44444444433333222211110 0 00222222 223689999999999995 899999999999999999999
Q ss_pred ChhhHHHHHH-------------------------------------------------HHHHHhCCeEecCChHHHHhh
Q 036401 553 DENTGKECIK-------------------------------------------------AVLFAVGNTLVCDGLDEAKVL 583 (1154)
Q Consensus 553 ~~~~a~~~i~-------------------------------------------------ai~~~lg~~lvve~~~~A~~i 583 (1154)
+..+|..|+. ++.++||+++||+|++.|..+
T Consensus 556 ~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~lg~~~v~~~l~~a~~~ 635 (1164)
T TIGR02169 556 DDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRL 635 (1164)
T ss_pred CHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCcccccCCCchHHHHHHccCcHHHHHHHHHHCCCeEEEcCHHHHHHH
Confidence 9999988775 567899999999999999998
Q ss_pred hccCCceeEEeeCCeEeecCceeeccCCCCcC-cccccCCHHHHHHHHHHHHHHHHHHHHHhh-hhHHhHHHHHHHhhHH
Q 036401 584 SWSGERFRVVTVDGILLTKAGTMTGGTTGGME-ARSKQWDDKKIEGLKRKKEQYESELEELGS-IREMQLRESETSGKIS 661 (1154)
Q Consensus 584 ~~~~~~~~~Vtl~G~~~~~~G~~tgg~~~~~~-~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~-~~~~~~~~~~l~~~i~ 661 (1154)
+. +++|||+||++++++|+||||+.+... .....|...++..+..++..+..++..+.. .......+..+...+.
T Consensus 636 ~~---~~~~vTldG~~~~~~G~~tgG~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~ 712 (1164)
T TIGR02169 636 MG---KYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELS 712 (1164)
T ss_pred hc---CCcEEEeCceeEcCCcCccCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 62 668999999999999999999732211 011123356677777777777777666654 3333344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhCCc
Q 036401 662 GLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKIDRRTTDINKLERRINEITDRLYRDFSESVGVA 741 (1154)
Q Consensus 662 ~l~~~l~~l~~el~~l~~~l~~l~~el~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~i~~l~~~~~~~~~~~~~~~ 741 (1154)
.+...+..+..++..+...+..+..++..+...+..+...+..+...+..+...+..+..++..+...+ ..+...+...
T Consensus 713 ~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~~~i~~l~~el-~~l~~~~~~~ 791 (1164)
T TIGR02169 713 DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL-NDLEARLSHS 791 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444444433333322 1111000000
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 742 NIREYEENQLKAAQNVAEERLNLSNQLAKLKYQLEYE--QKRDVESRIKKLESSLSTLENDLKQVKKKEGDVKSATETAT 819 (1154)
Q Consensus 742 ~~~~~e~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 819 (1154)
....... ....+...+..+...+..+...+... .+..+...+..+...+..+...+..+...+..+...+..+.
T Consensus 792 ~~~~~~~----~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 867 (1164)
T TIGR02169 792 RIPEIQA----ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE 867 (1164)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 11112222222222222222221111 11122223333333333333333333333333333333333
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCC
Q 036401 820 GDITRWKEEMRGWKSNSDECEKEIQEWEKQASAATTSLSKLNRQINSKEAQIEQLISRKQEIMEKCELECIVLPTVEDPM 899 (1154)
Q Consensus 820 ~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 899 (1154)
..+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+......+..... .+..+.. .
T Consensus 868 ~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~--~- 942 (1164)
T TIGR02169 868 EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS--EIEDPKG--E- 942 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhhh--h-
Confidence 3344444444444444444444444444444444444444444444444444333333222221111 0111100 0
Q ss_pred CCCCCCCCCCCCCcccchhhhhcCchhHHhhhHHHHHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 900 ETDSSSPGPVFDFSQLNRSYLQERRPSEREKLEVEFKQKMDALISEIEKTAP-NLKALDQYEALLEKERTVTEEFEAARK 978 (1154)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~-n~~a~e~~~~~~~~~~~~~~~~~~l~~ 978 (1154)
..++ +. ....... +..++..+..+|..+|| |+.|+++|+++.++|.++..+++++..
T Consensus 943 ---------~~~~---~~------~~~~~~~----l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~ 1000 (1164)
T TIGR02169 943 ---------DEEI---PE------EELSLED----VQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEE 1000 (1164)
T ss_pred ---------hhhc---cc------ccCCHHH----HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 0001234 78889999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCCCCCCCcccceeecCCCCcccccc
Q 036401 979 EEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDME 1058 (1154)
Q Consensus 979 ~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1154)
++..+.+.|..++..+...|+.+|..|+..|..+|..| + ||.+.+.+.++++|+..|+.+.+.||++...++.
T Consensus 1001 ~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l-----~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1164)
T TIGR02169 1001 ERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAEL-----S--GGTGELILENPDDPFAGGLELSAKPKGKPVQRLE 1073 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h--CCeEEEEecCCCCcccCCeEEEEEcCCCCCCcch
Confidence 99999999999999999999999999999999999999 5 7888988888788999999999999999889999
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHH
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFY 1138 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~ 1138 (1154)
.||||||++++||++||+|.+.|||||||||||++||+.|+..+..+|..+ . .++|||||||++.++
T Consensus 1074 ~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~------------~-~~~~~i~~t~~~~~~ 1140 (1164)
T TIGR02169 1074 AMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREK------------A-GEAQFIVVSLRSPMI 1140 (1164)
T ss_pred hcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHh------------c-CCCeEEEEECcHHHH
Confidence 999999999999999999999999999999999999999999999999998 3 568999999999999
Q ss_pred HhccceEEEeec-CCC
Q 036401 1139 DKAEALVGVYRD-SDR 1153 (1154)
Q Consensus 1139 ~~~d~~~GV~~~-~~~ 1153 (1154)
..||++|||||. +|.
T Consensus 1141 ~~~d~~~~~~~~~~g~ 1156 (1164)
T TIGR02169 1141 EYADRAIGVTMRRNGE 1156 (1164)
T ss_pred HhcceeEeEEEecCCe
Confidence 999999999997 774
No 6
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.6e-96 Score=813.54 Aligned_cols=1075 Identities=21% Similarity=0.337 Sum_probs=733.6
Q ss_pred CceeEEEEecceeccCceeecCCCC-eEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSD-FTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRA 86 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~-~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a 86 (1154)
|+|+.|.|.||+||.+.+++.||+| .|+|||.|||||||++.||+|||....+.+|......|||.|+. +..-.|
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk~E~R~gLlHEGsG----~~V~sA 76 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLKREERQGLLHEGSG----AMVMSA 76 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcCHHHHhhhhhcCCC----cceEEE
Confidence 6999999999999999999988877 99999999999999999999999988877877777889999863 456789
Q ss_pred EEEEEEEeCC------CceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHH
Q 036401 87 FVRLVYQLGN------ESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKEL 160 (1154)
Q Consensus 87 ~v~~~~~~~~------~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~ 160 (1154)
+|+++|+|++ +.+|+|+|+|... ...|++|++.|+..+|..+|...|....+|+|+|.||.|.+++++.+.+|
T Consensus 77 ~VEIvF~nsdnr~~~~k~Ev~lrRtVGlK-KDeY~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~QGkI~~La~akD~eR 155 (1200)
T KOG0964|consen 77 SVEIVFDNSDNRLPRGKSEVSLRRTVGLK-KDEYFLDNKMVTKGEVVNLLESAGFSRSNPYYIVPQGKINELANAKDSER 155 (1200)
T ss_pred EEEEEEeCcccccCCCCCeEEEEEeeccc-chhhhcccccccHHHHHHHHHhcCcccCCCceEeechhhHHhhcCCcHHH
Confidence 9999999875 4799999999864 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 036401 161 TALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAERHLRLQDQLKSLKKEHFLWQLFNI 240 (1154)
Q Consensus 161 ~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~~~~~~~~el~~l~~~~~~~~l~~~ 240 (1154)
++++.+++|+.-|..+.++..+.++.+...-......+..|.+.+..|+..++++..|.++..+.+.++..++..++...
T Consensus 156 L~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~ 235 (1200)
T KOG0964|consen 156 LELLKEVAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEI 235 (1200)
T ss_pred HHHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHH
Confidence 99999999999999999998888888877666666666777777899999999999999999999988877777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhhHHHHHHHHHHH
Q 036401 241 EKDITKASKDLEAEKRSREEVMRELEHFEDQKRGKRKELAKYLKEIAQCEKKIAERNNRLDKSQPELLKLNEEMSRINSK 320 (1154)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~~~~i~~~~~~ 320 (1154)
..++..+.......-.+-......+...+.....+..++.++...+..+....+.+..+...+-.....++-++..+..+
T Consensus 236 ~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~ 315 (1200)
T KOG0964|consen 236 NGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQ 315 (1200)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 66666665555444444444444444444444444444444444444444333333333222222233333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCC-CCchhhHHHHHHHH--HHH---hhhhHHH
Q 036401 321 IKSSKKELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSRDGAGRL-PLLDTQLTEYFQIK--EEA---GMKTAKL 394 (1154)
Q Consensus 321 i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~--~~~---~~~~~~~ 394 (1154)
+....+........+......+...+.++..+......+..+-......+ .+.+....-+.+-. .++ ...-.++
T Consensus 316 i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwi 395 (1200)
T KOG0964|consen 316 ITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWI 395 (1200)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHH
Confidence 44333333333333333333333333333333333333222111100000 00000000000000 000 1223467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 395 RDEKEVLDREQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELRSMQDKHRDSRQK 474 (1154)
Q Consensus 395 ~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~~ 474 (1154)
+.++..+..-+.........++.++..++..+.....++..+...+.+...++.++..+...+..++.++......++.+
T Consensus 396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---h--cCCcceecccccccCchhHHHHHHHhhccCCCeE
Q 036401 475 YENLKSKIGEIENQLRELKADRHENERDAKLSQAVETLKR---L--FQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAV 549 (1154)
Q Consensus 475 ~~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~l~~l~~---~--~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~i 549 (1154)
...+...+..+...+......+.... .......|..++. . ..||+|+|++|+.++ +.|.+||+++.|..|.++
T Consensus 476 E~~l~~~i~~~~~dl~~~~~~L~~~~-~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~-~~f~tavEvtaGNsLF~i 553 (1200)
T KOG0964|consen 476 EKKLRSLIANLEEDLSRAEKNLRATM-NRSVANGIDSVRKIKEELKPNGVFGTVYELIKVP-NKFKTAVEVTAGNSLFNI 553 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhhhhHHHHHHHHHhcccccceehhhhhcCC-HHHHhHHhhhcccceEEE
Confidence 99999999998888887776654421 1223334433332 2 469999999999995 689999999999999999
Q ss_pred EecChhhHHHHHH----------------------------------------------HHHHHhCCeEecCChHHHHhh
Q 036401 550 VVEDENTGKECIK----------------------------------------------AVLFAVGNTLVCDGLDEAKVL 583 (1154)
Q Consensus 550 Vvd~~~~a~~~i~----------------------------------------------ai~~~lg~~lvve~~~~A~~i 583 (1154)
|||+.++|-+++. |+.+++|.+|||.|++.|..+
T Consensus 554 VVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp~~sdaiPli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ 633 (1200)
T KOG0964|consen 554 VVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDVEYPKDSDAIPLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRL 633 (1200)
T ss_pred EecccHHHHHHHHHHHhccCCeeEEeecccCchhhccCCCCCCccchHHHhCcchhhHHHHHHHhCceEEeccHHHHHHH
Confidence 9999999998876 899999999999999999887
Q ss_pred hccCCceeEEeeCCeEeecCceeeccCCCCcCcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHhhHHHH
Q 036401 584 SWSGERFRVVTVDGILLTKAGTMTGGTTGGMEARSKQWDDKKIEGLKRKKEQYESELEELGSIREMQLRESETSGKISGL 663 (1154)
Q Consensus 584 ~~~~~~~~~Vtl~G~~~~~~G~~tgg~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~~~~~~~l~~~i~~l 663 (1154)
+. .+.+.|||++|+.+++.|.||||+.+.. ++..-....+.....++.++...+..+ ...+.....+|..+
T Consensus 634 ak-~~~ln~ITl~GDqvskkG~lTgGy~D~k--rsrLe~~k~~~~~~~~~~~l~~~L~~~------r~~i~~~~~~i~q~ 704 (1200)
T KOG0964|consen 634 AK-KHELNCITLSGDQVSKKGVLTGGYEDQK--RSRLELLKNVNESRSELKELQESLDEV------RNEIEDIDQKIDQL 704 (1200)
T ss_pred HH-hcCCCeEEeccceecccCCccccchhhh--hhHHHHHhhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 73 4456899999999999999999986432 111111122223333333333333333 33555566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhCCcch
Q 036401 664 EKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKIDRRTTDINKLERRINEITDRLYRDFSESVGVANI 743 (1154)
Q Consensus 664 ~~~l~~l~~el~~l~~~l~~l~~el~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~ 743 (1154)
...++.++.+...+......+..++..+..+.-.++..+......+..+...+..++.....++.++..++...+.....
T Consensus 705 ~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~ 784 (1200)
T KOG0964|consen 705 NNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEEL 784 (1200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHH
Confidence 77777777777777777777777777777777777777777777778888888888877777777665444433332111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 036401 744 REYEENQLKAAQNVAEERLNLS-------NQLAKLKYQLEYEQKRDVESRIKKLESSLSTL-----ENDLKQVKKKEGDV 811 (1154)
Q Consensus 744 ~~~e~~~~~~~~~~~~~~~~l~-------~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-----~~~~~~~~~~~~~~ 811 (1154)
..+.. +...+..+...+..+. .....++..+ ...+..+...+...+..+ ...+...+.++...
T Consensus 785 e~l~k-Ln~eI~~l~~kl~~~~~er~~~~~rk~~le~~l----~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~ 859 (1200)
T KOG0964|consen 785 ERLSK-LNKEINKLSVKLRALREERIDIETRKTALEANL----NTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESE 859 (1200)
T ss_pred HHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHH
Confidence 11111 1111122222222111 1111111111 112222333333333222 22233333333333
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 036401 812 KSATETATGDITRWKEEMRGWKSNSDECEKEIQEWEKQASAATTSLSKLNRQINSKEAQIEQLISRKQEIMEKCELECIV 891 (1154)
Q Consensus 812 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~e~~~ 891 (1154)
...++....++..++..+......+.+....+..+..--...... ....+++..+...-.-+...+.+..++ +.
T Consensus 860 ~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~-~~~dKe~Ek~~~rk~~Ll~KreE~~ek-----Ir 933 (1200)
T KOG0964|consen 860 EKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDN-INFDKELEKLVRRKHMLLKKREECCEK-----IR 933 (1200)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 444444444444444444444444444443333333222221111 111111111111111111111111111 10
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcccchhhhhcCchhHHhhhHHHHHHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHH
Q 036401 892 LPTVEDPMETDSSSPGPVFDFSQLNRSYLQERRPSEREKLEVEFKQKMDALISEIEKTA-PNLKALDQYEALLEKERTVT 970 (1154)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~-~n~~a~e~~~~~~~~~~~~~ 970 (1154)
.++.+|.+.-........++ +.+++..+..++..++ +|.+|+++|..+.++.+.+.
T Consensus 934 -------------------~lG~Lp~daf~ky~~~~~~e----l~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~ 990 (1200)
T KOG0964|consen 934 -------------------ELGVLPEDAFEKYQDKKSKE----LMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLK 990 (1200)
T ss_pred -------------------hcCCCchHHHHHhccCCHHH----HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 11222222111111112456 8889999999999998 59999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCCC---------C----
Q 036401 971 EEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENED---------D---- 1037 (1154)
Q Consensus 971 ~~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---- 1037 (1154)
+..+++....+.+.+.|..++....+....+|..|..+|..+|..| .| +|++.+.+...+ .
T Consensus 991 ~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~~L-----Vp-~G~a~iim~k~d~~~d~~e~d~~~~~ 1064 (1200)
T KOG0964|consen 991 KRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFSEVFSRL-----VP-GGTALIIMRKRDNANDHDEDDGDMDG 1064 (1200)
T ss_pred HHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh-----CC-CCceeehhhccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999 77 888855432110 0
Q ss_pred ---------CCCcccceeecCCCC--cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHH
Q 036401 1038 ---------PFLHGIKYTAMPPTK--RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFI 1106 (1154)
Q Consensus 1038 ---------~~~~~~~~~~~~~~~--~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l 1106 (1154)
....||.+.+...++ ..+.+.+||||+|++|||||+||+++|.|||||+|||+||+||+..|..|+.||
T Consensus 1065 ~s~~~~~sv~~ytGIsI~VSFnskq~E~~~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lI 1144 (1200)
T KOG0964|consen 1065 ESNEGKDSVEMYTGISIKVSFNSKQGETLEMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLI 1144 (1200)
T ss_pred cccccccchhhccceeEEEEeecCccHHHHHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHH
Confidence 112466666665554 347789999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEeecC
Q 036401 1107 RSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVYRDS 1151 (1154)
Q Consensus 1107 ~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~~~~ 1151 (1154)
++| + .++|||++|++++++..||.+|||.-.+
T Consensus 1145 kel------------S-~~aQFI~TTFRpEll~vAdKfygV~f~n 1176 (1200)
T KOG0964|consen 1145 KEL------------S-DSAQFITTTFRPELLSVADKFYGVKFEN 1176 (1200)
T ss_pred HHH------------h-hccceEeecccHHHHHHHHhhhceeecc
Confidence 999 3 6799999999999999999999995443
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=2.4e-82 Score=843.95 Aligned_cols=1072 Identities=23% Similarity=0.357 Sum_probs=604.0
Q ss_pred ceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-ccccccchhhhcccchhhhcccceEE
Q 036401 9 KIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 9 ~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
+|.+|.|.|||||.+.+.|.|.++||+||||||||||||||||+||||..++. +|+.++.++||.|+. ..+++..|+
T Consensus 1 ~i~~l~~~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~--~~~~~~~~~ 78 (1179)
T TIGR02168 1 RLKKLELAGFKSFADPTTINFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSE--TRKPLSLAE 78 (1179)
T ss_pred CeeEEEEeCccccCCCeeEEecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCc--ccCCCCeeE
Confidence 58999999999999887787777899999999999999999999999998764 899999999999863 224557899
Q ss_pred EEEEEEeCC-------CceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHH
Q 036401 88 VRLVYQLGN-------ESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKEL 160 (1154)
Q Consensus 88 v~~~~~~~~-------~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~ 160 (1154)
|.++|.+++ ..+++|.|++.++|.+.|++||++++..+|.++|..+||+++++ ++++||+|..|+.|+|.++
T Consensus 79 v~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~-~~~~q~~~~~~~~~~~~~~ 157 (1179)
T TIGR02168 79 VELVFDNSDGLLPGADYSEISITRRLYRDGESEYFINGQPCRLKDIQDLFLDTGLGKRSY-SIIEQGKISEIIEAKPEER 157 (1179)
T ss_pred EEEEEecCCCCCCCCCCCeEEEEEEEeeCCCceeeECCCcccHHHHHHHHhccCCCcccc-hheecccHHHHHcCCHHHH
Confidence 999998643 24699999999989999999999999999999999999998765 4789999999999999999
Q ss_pred HHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 036401 161 TALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAERHLRLQDQLKSLKKEHFLWQLFNI 240 (1154)
Q Consensus 161 ~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~~~~~~~~el~~l~~~~~~~~l~~~ 240 (1154)
+.+|++++|+..|...++.+...+.++. +.+..+...+..++.+++.+.+|..+..++..+...+...++..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~t~~nL~r~~-------d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~ 230 (1179)
T TIGR02168 158 RAIFEEAAGISKYKERRKETERKLERTR-------ENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALL 230 (1179)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888877777666655 445566666788888899999999999888888877777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhhHHHHHHHHHHH
Q 036401 241 EKDITKASKDLEAEKRSREEVMRELEHFEDQKRGKRKELAKYLKEIAQCEKKIAERNNRLDKSQPELLKLNEEMSRINSK 320 (1154)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~~~~i~~~~~~ 320 (1154)
...+..+...+..+..++..+..++..+..++..+...+..+...+..+...+..+...+..+...+..+..++..+..+
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~ 310 (1179)
T TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 66677776666666666666666666666666665555555555555555555555555555555555555555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHhhhhHHHHHHHHH
Q 036401 321 IKSSKKELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSRDGAGRLPLLDTQLTEYFQIKEEAGMKTAKLRDEKEV 400 (1154)
Q Consensus 321 i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 400 (1154)
+..+...+..+...+..+...+..+...+..+...+..+...+..... ....+.................+..
T Consensus 311 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~ 383 (1179)
T TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA-------ELEELEAELEELESRLEELEEQLET 383 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433333332222111 0001000001111111222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 036401 401 LDREQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQ------------KNILDASGGHKDELTKLKKELRSMQDKH 468 (1154)
Q Consensus 401 l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~------------~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 468 (1154)
+..++..+...+..+...+..+..++..+..++..+...+ ..+...+..+...+..+...+..+..++
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 463 (1179)
T TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333322222222 2222223333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHhh---hcCCcceecccccccCchhHHHHHHHh
Q 036401 469 RDSRQKYENLKSKIGEIENQLRELKADRHENER-D---AKLSQAVETLKR---LFQGVHGRMTDLCRPTQKKYNLAVTVA 541 (1154)
Q Consensus 469 ~~l~~~~~~l~~~l~~l~~~l~~l~~~~~~~~~-~---~~~~~~l~~l~~---~~~gv~g~l~~l~~~~~~~~~~av~~~ 541 (1154)
..+...+..+...+..+...+..+......... . ......+..+.. .++|+.|.+.+++.+ ++.|..|+..+
T Consensus 464 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~v~~~i~v~~~~~~~~g~~~~li~~-~~~~~~a~~~~ 542 (1179)
T TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV-DEGYEAAIEAA 542 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhcccccCCCccchhceeee-ChhHHHHHHHH
Confidence 333333333333333333222222111000000 0 000001111111 246788999998887 47899999999
Q ss_pred hccCCCeEEecChhhHHHHHHHH-----------------------------------------------------HHHh
Q 036401 542 MGKFMDAVVVEDENTGKECIKAV-----------------------------------------------------LFAV 568 (1154)
Q Consensus 542 lG~~l~~iVvd~~~~a~~~i~ai-----------------------------------------------------~~~l 568 (1154)
+|..+.++||++..+|..|+..+ .+.+
T Consensus 543 ~g~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~ 622 (1179)
T TIGR02168 543 LGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL 622 (1179)
T ss_pred HHHHhcCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchhhccccCchhHHHHHHhcccHhHHHHHHHHh
Confidence 99988889999998877655322 1122
Q ss_pred CCeEecCChHHHHhhhc-cCCceeEEeeCCeEeecCceeeccCCCCcCcccccCCHHHHHHHHHHHHHHHHHHHHHhh-h
Q 036401 569 GNTLVCDGLDEAKVLSW-SGERFRVVTVDGILLTKAGTMTGGTTGGMEARSKQWDDKKIEGLKRKKEQYESELEELGS-I 646 (1154)
Q Consensus 569 g~~lvve~~~~A~~i~~-~~~~~~~Vtl~G~~~~~~G~~tgg~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~-~ 646 (1154)
|++.+|.+++.|..+.+ .+....+||++|.++..+|.++||.+... ........++..+...+..+...+..+.. .
T Consensus 623 ~~~~ivt~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~~~~~--~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~ 700 (1179)
T TIGR02168 623 GGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTN--SSILERRREIEELEEKIEELEEKIAELEKAL 700 (1179)
T ss_pred CCceEeCCHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCccccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333322 01111334444433333333333321100 00011122334444444444444333332 1
Q ss_pred hHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 647 REMQLRESETSGKISGLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKIDRRTTDINKLERRINEI 726 (1154)
Q Consensus 647 ~~~~~~~~~l~~~i~~l~~~l~~l~~el~~l~~~l~~l~~el~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~i~~l 726 (1154)
......+..+...+..++..+..+...+..+...+..+..++..+..++..+...+..+...+..+...+..+...+..+
T Consensus 701 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 780 (1179)
T TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333333333333333333333333333333333333333333333333333333333333333333333222
Q ss_pred HHHHHHHhHhhhCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-------hhhHHHHHHHHHHHHHHH
Q 036401 727 TDRLYRDFSESVGVANIREYEENQLKAAQNVAEERLNLSNQLAKLKYQLEYE--Q-------KRDVESRIKKLESSLSTL 797 (1154)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~-------~~~~~~~~~~l~~~l~~l 797 (1154)
...+. .... .+..+... .......+..+...+..+...+... . +..+..++..+...+..+
T Consensus 781 ~~~~~-~~~~-----~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~ 850 (1179)
T TIGR02168 781 EAEIE-ELEA-----QIEQLKEE----LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850 (1179)
T ss_pred HHHHH-HHHH-----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22210 0000 00001111 1111111122222222221111100 1 111222222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 798 ENDLKQVKKKEGDVKSATETATGDITRWKEEMRGWKSNSDECEKEIQEWEKQASAATTSLSKLNRQINSKEAQIEQLISR 877 (1154)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~ 877 (1154)
...+..+...+..+...+..+...+..+...+..+...+..+...+.++...+......+..+...+..+...+..+...
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 930 (1179)
T TIGR02168 851 SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR 930 (1179)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333333322
Q ss_pred HHHHHHHhhhhccccCCCCCCCCCCCCCCCCCCCCcccchhhhhcCchhHHhhhHHHHHHHHHHHHHHHhhcCCChhHHH
Q 036401 878 KQEIMEKCELECIVLPTVEDPMETDSSSPGPVFDFSQLNRSYLQERRPSEREKLEVEFKQKMDALISEIEKTAPNLKALD 957 (1154)
Q Consensus 878 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~n~~a~e 957 (1154)
...+....... .. .+. .++...+...... ... +..++..++..|..+|| |++
T Consensus 931 ~~~l~~~l~e~-~~-~~~--------------~~~~~~~~~~~~~-----~~~----~~~~~~~l~~~i~~lg~---aie 982 (1179)
T TIGR02168 931 LEGLEVRIDNL-QE-RLS--------------EEYSLTLEEAEAL-----ENK----IEDDEEEARRRLKRLEN---KIK 982 (1179)
T ss_pred HHHHHHHHHHH-HH-HHH--------------HHhccCHHHHHhh-----ccc----cccCHHHHHHHHHHHHH---HHH
Confidence 22221111000 00 000 0000000000000 000 13346667777777777 778
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCCCCCceEEE
Q 036401 958 QYEALL----EKERTVTEEFEAARKEEKQAADAYNSVKQKRYGLF---MEAFNHISSSIDRIYKQLTRSNTHPLGGTAYL 1030 (1154)
Q Consensus 958 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~f---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1154)
+|+.+. ++|.++..+++|+..++..+...|.+++......| ..+|..|+..|..+|+.|+... ++ ||.+++
T Consensus 983 e~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~-~~-~~~~~~ 1060 (1179)
T TIGR02168 983 ELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKL-FG-GGEAEL 1060 (1179)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC-CCeEEE
Confidence 887777 88888888889988888889999999998888888 8888888888888887774332 34 899999
Q ss_pred eccCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcc
Q 036401 1031 NLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKS 1110 (1154)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~ 1110 (1154)
.+.++++||..|+.+.+.||++...++..|||||+++++||++||++.+.||||+||||||++||+.++..|..+|..+
T Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~- 1139 (1179)
T TIGR02168 1061 RLTDPEDLLEAGIEIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEF- 1139 (1179)
T ss_pred EeCCCCcccccCceEEEeCCCCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHh-
Confidence 9888888999999999999999889999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEeecC-CC
Q 036401 1111 CEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVYRDS-DR 1153 (1154)
Q Consensus 1111 ~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~~~~-~~ 1153 (1154)
. .+.|||||||++.++..||++||||+.. |.
T Consensus 1140 -----------~-~~~~~i~~sh~~~~~~~~d~~~~~~~~~~~~ 1171 (1179)
T TIGR02168 1140 -----------S-KNTQFIVITHNKGTMEVADQLYGVTMQEKGV 1171 (1179)
T ss_pred -----------c-cCCEEEEEEcChhHHHHhhhHeeeeeccCCc
Confidence 3 4588999999999999999999999994 64
No 8
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=100.00 E-value=6.1e-73 Score=648.69 Aligned_cols=936 Identities=19% Similarity=0.313 Sum_probs=532.3
Q ss_pred CCCceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-ccccccchhhhcccchhhhcccc
Q 036401 6 SPGKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLKDLIYAYDDKEKEQKGR 84 (1154)
Q Consensus 6 ~~~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~~~~~~I~~g~~~~~~~~~~ 84 (1154)
..|+|.+|.|.|||||++. .|.|.+++|.||||||||||+||.||+.|||+++.. .||++++|||+.|++
T Consensus 38 ~sG~I~sI~L~NFMCHsnL-~IeFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~-------- 108 (1074)
T KOG0250|consen 38 ESGKIESIHLTNFMCHSNL-LIEFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCS-------- 108 (1074)
T ss_pred hcceEEEEEEeeecccccc-eeccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCc--------
Confidence 5699999999999999998 466656688899999999999999999999999875 999999999999986
Q ss_pred eEEEEEEEEeCC---------CceEEEEEEEecCCCeEEEE---CCccccHH--HHHHHHHhcCCccccCeeEEecchhh
Q 036401 85 RAFVRLVYQLGN---------ESELQFTRTITSSGGSEYRI---DGRVVNWD--EYNAKLRSLGILVKARNFLVFQGDVE 150 (1154)
Q Consensus 85 ~a~v~~~~~~~~---------~~~~~i~R~i~~~g~s~y~i---n~~~~~~~--~~~~~l~~~~i~~~~~~~~i~Qg~v~ 150 (1154)
.|-|.+++.|.+ |+.|+|.|+|.++|...|.. +|++|+.+ |+..++.+|||++.+|-|++.|..--
T Consensus 109 ~A~IsItL~N~G~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR 188 (1074)
T KOG0250|consen 109 SAKISITLSNSGLDAFKPEIYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAAR 188 (1074)
T ss_pred ceEEEEEEecCCcccCChhhcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHH
Confidence 688888888853 68999999999998766655 68888865 99999999999999999999999976
Q ss_pred hhhc-CCchHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 151 SIAS-KNPKELTALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAERHLRLQDQLKSLK 229 (1154)
Q Consensus 151 ~i~~-~~p~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~~~~~~~~el~~l~ 229 (1154)
+|+. ++|++.|+||.+++.+......|..+...+..+.+.+......+..+..+++.++......+....+.+.+..+.
T Consensus 189 ~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk 268 (1074)
T KOG0250|consen 189 SFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLK 268 (1074)
T ss_pred HHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 899999999999999999999999999999999999999999999999999888888888888888888899999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhh
Q 036401 230 KEHFLWQLFNIEKDITKASKDLEAEKRSREEVMRELEHFEDQKRGKRKELAKYLKEIAQCEKKIAERNNRLDKSQPELLK 309 (1154)
Q Consensus 230 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~ 309 (1154)
..+.|..++....++....+.+...+.....+...+......+..+...+...++++..+....+....++.
T Consensus 269 ~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~-------- 340 (1074)
T KOG0250|consen 269 AKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIE-------- 340 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHH--------
Confidence 999999999999999998888888888888887777766666666555555544444444433333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHhh
Q 036401 310 LNEEMSRINSKIKSSKKELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSRDGAGRLPLLDTQLTEYFQIKEEAGM 389 (1154)
Q Consensus 310 ~~~~i~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 389 (1154)
.+.+.+.....+...++..+......+..++..+..++..+..++++..
T Consensus 341 ------~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~------------------------- 389 (1074)
T KOG0250|consen 341 ------EARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN------------------------- 389 (1074)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 2223333333333333333333333333333333333333333322110
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 036401 390 KTAKLRDEKEVLDREQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELRSMQDKHR 469 (1154)
Q Consensus 390 ~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 469 (1154)
..+..++.+..+++..++.+++.++..+..|..+.+ .+...+...+.+....+..+..
T Consensus 390 ---------~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~-------~~~~~~~~~~ee~~~i~~~i~~------ 447 (1074)
T KOG0250|consen 390 ---------NELGSELEERENKLEQLKKEVEKLEEQINSLREELN-------EVKEKAKEEEEEKEHIEGEILQ------ 447 (1074)
T ss_pred ---------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHH------
Confidence 011111111122222222222222222222222222 2222222222222212122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhcC-CcceecccccccCchhHHHHHHHhhc
Q 036401 470 DSRQKYENLKSKIGEIENQLRELKADRHEN-----ERDAKLSQAVETLKRLFQ-GVHGRMTDLCRPTQKKYNLAVTVAMG 543 (1154)
Q Consensus 470 ~l~~~~~~l~~~l~~l~~~l~~l~~~~~~~-----~~~~~~~~~l~~l~~~~~-gv~g~l~~l~~~~~~~~~~av~~~lG 543 (1154)
+...+......++.++...... .....+...|..-...|. -|+||+|.++++++++|+.||+.+||
T Consensus 448 --------l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~ 519 (1074)
T KOG0250|consen 448 --------LRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLG 519 (1074)
T ss_pred --------HHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHH
Confidence 2222222222233332221110 112334444444333443 47899999999999999999999999
Q ss_pred cCCCeEEecChhhHHH---HHH--------------------------------------------HHHHH-----hCCe
Q 036401 544 KFMDAVVVEDENTGKE---CIK--------------------------------------------AVLFA-----VGNT 571 (1154)
Q Consensus 544 ~~l~~iVvd~~~~a~~---~i~--------------------------------------------ai~~~-----lg~~ 571 (1154)
..|++|||.++.++.- |+. +..++ +..+
T Consensus 520 n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~ 599 (1074)
T KOG0250|consen 520 NLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQV 599 (1074)
T ss_pred HhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCccccccccCCCCCCCceeeeeecCChHHHHHhhhhccceeE
Confidence 9999999999987653 332 22222 2346
Q ss_pred EecCChHHHHhhhc-c--CCce-eEEeeCCeEeecCce---eeccCCCCcCcccccCCHHHHHHHHHHHHHHHHHHHHHh
Q 036401 572 LVCDGLDEAKVLSW-S--GERF-RVVTVDGILLTKAGT---MTGGTTGGMEARSKQWDDKKIEGLKRKKEQYESELEELG 644 (1154)
Q Consensus 572 lvve~~~~A~~i~~-~--~~~~-~~Vtl~G~~~~~~G~---~tgg~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~ 644 (1154)
|+++|-.+|..+.- . +.++ .++|+||..+..+|. .+.+.++... +. .....
T Consensus 600 lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r-~~-~~~~~-------------------- 657 (1074)
T KOG0250|consen 600 LLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRAR-RP-GVDEF-------------------- 657 (1074)
T ss_pred EEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCC-Cc-cccch--------------------
Confidence 88999777777543 2 3333 588999987665554 2222221110 00 00000
Q ss_pred hhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 645 SIREMQLRESETSGKISGLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKIDRRTTDINKLERRIN 724 (1154)
Q Consensus 645 ~~~~~~~~~~~l~~~i~~l~~~l~~l~~el~~l~~~l~~l~~el~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~i~ 724 (1154)
.....+..++.++..++.++..+..+...++..++.++..+..+... +..++..+.....++.
T Consensus 658 ---s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~--------------~~q~~~~~~~~~~em~ 720 (1074)
T KOG0250|consen 658 ---SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEH--------------IEQIKRRIRKKRAEMT 720 (1074)
T ss_pred ---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 00011122222222222233333333333333333222222222222 2222222222222222
Q ss_pred HHHHHHHHHhHhhhCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036401 725 EITDRLYRDFSESVGVANIREYEENQLKAAQNVAEERLNLSNQLAKLKYQLEYEQKRDVESRIKKLESSLSTLENDLKQV 804 (1154)
Q Consensus 725 ~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 804 (1154)
++.... .... .++..+++... ++......+. .....+..+...+..+..+..++
T Consensus 721 el~n~~-e~~~-----~~~~~~~~l~~--------ei~~~~~eIe------------~~~~~~e~l~~e~e~~~~e~~e~ 774 (1074)
T KOG0250|consen 721 ELKNTA-EEKQ-----VDISKLEDLAR--------EIKKKEKEIE------------EKEAPLEKLKEELEHIELEAQEL 774 (1074)
T ss_pred HHhhhh-hhhh-----cchhhhHHHHH--------HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 222210 0000 01111221111 0000000000 01111122222222222222222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 805 KKKEGDVKSATETATGDITRWKEEMRGWKSNSDECEKEIQEWEKQASAATTSLSKLNRQINSKEAQIEQLISRKQEIMEK 884 (1154)
Q Consensus 805 ~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 884 (1154)
....+.....+......+..+..+++.....+...+....+.++.+......+...+.....+...+....... ...
T Consensus 775 ~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka---~~~ 851 (1074)
T KOG0250|consen 775 EEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKLKSRLEELKQKEVEKVNLEEPRAEEDQKA---RTE 851 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhhhcchhhhCchh---hhh
Confidence 22222222222222222222222222222222222222222222222222222222222222221111110000 000
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCCCCCcccchhhhhcCchhHHhhhHHHHHHHHHHHHHHHhhcCC---ChhHHHHHHH
Q 036401 885 CELECIVLPTVEDPMETDSSSPGPVFDFSQLNRSYLQERRPSEREKLEVEFKQKMDALISEIEKTAP---NLKALDQYEA 961 (1154)
Q Consensus 885 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~---n~~a~e~~~~ 961 (1154)
| |-. .+.+..++ ++.++ +.++|..++..+..... ++.. .+..
T Consensus 852 c-------p~~-------------~~ei~~~~---------~~~~e----ik~ei~rlk~~i~~~ee~~~~~~e--~~~~ 896 (1074)
T KOG0250|consen 852 C-------PEE-------------GIEIEALG---------KTVAE----IKREIKRLKRQIQMCEESLGELEE--LHRG 896 (1074)
T ss_pred C-------ccc-------------cchhhccc---------chHHH----HHHHHHHHHHHHHHHHHhcchHHH--HHHH
Confidence 1 000 01111111 12345 88888888888886642 2221 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCCCCCCCc
Q 036401 962 LLEKERTVTEEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLH 1041 (1154)
Q Consensus 962 ~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1154)
.-+.+..+.+ ...+..-++++...+...-..|...|..+...+..+....|..++..++|. |...++.. .+.+
T Consensus 897 ~~~~~~~~~k-~~~~k~~~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l~~R~~s--g~l~~~~e--~ktl-- 969 (1074)
T KOG0250|consen 897 LHEARKELKK-EDELKVTLDELLKALGEALESREQKYQKFRKLLTRRATEEFDALLGKRGFS--GKLEFDHE--EKTL-- 969 (1074)
T ss_pred HHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC--cceeeccc--cccc--
Confidence 1111122211 122222245666667777788888999999999999999999999988884 66666543 2223
Q ss_pred ccceee-cCCCC---cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCC
Q 036401 1042 GIKYTA-MPPTK---RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGN 1117 (1154)
Q Consensus 1042 ~~~~~~-~~~~~---~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~ 1117 (1154)
++.+ .|++. ..+++..||||||||+++||+||||.++.+||++|||||+|||.+||...+++|..+
T Consensus 970 --~i~v~~~~~~~~~~v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~-------- 1039 (1074)
T KOG0250|consen 970 --SISVKLPTSGNEKAVRDTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDF-------- 1039 (1074)
T ss_pred --chhhccCCCCcccccccccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHH--------
Confidence 3344 55543 368999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeEEEEEechh-HHHhcc
Q 036401 1118 QDADEGNGFQSIVISLKDS-FYDKAE 1142 (1154)
Q Consensus 1118 ~~a~~~~~~q~i~it~~~~-~~~~~d 1142 (1154)
|.. .+.|||||||++- .+...|
T Consensus 1040 --a~~-~~~Q~IfiTPqdi~~l~~~~ 1062 (1074)
T KOG0250|consen 1040 --AKK-KGRQFIFITPQDISKLNSDD 1062 (1074)
T ss_pred --HHh-hcceEEEEccccHhhhcccc
Confidence 434 5699999999954 444445
No 9
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=3.8e-55 Score=493.97 Aligned_cols=266 Identities=22% Similarity=0.306 Sum_probs=227.5
Q ss_pred CCCceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-ccccccchhhhcccchhhhcccc
Q 036401 6 SPGKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLKDLIYAYDDKEKEQKGR 84 (1154)
Q Consensus 6 ~~~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~~~~~~I~~g~~~~~~~~~~ 84 (1154)
.+|.|.+|+++||..|.+.. ++|.+.||+|+||||||||+|++|||.||||++.. .|+.++.++|+.|++
T Consensus 18 ~~GsIvrI~l~NF~Ty~~~e-~~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~-------- 88 (1072)
T KOG0979|consen 18 PDGSIVRIELHNFLTYDHTE-FLPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGED-------- 88 (1072)
T ss_pred CCCceEEEEEeeeeeeeeee-ecCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCc--------
Confidence 58999999999999999865 55777799999999999999999999999999886 799999999999975
Q ss_pred eEEEEEEEEeCCCceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHHHHH
Q 036401 85 RAFVRLVYQLGNESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALL 164 (1154)
Q Consensus 85 ~a~v~~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~ 164 (1154)
.++|++++-+. +.+++|+|.|.+++.|.|+|||..|+.++|.++...|+|++++..-|.+|.+|.+|+..+|-+++.-.
T Consensus 89 ~g~IEI~l~~~-~e~~~ItR~I~~~k~S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eT 167 (1072)
T KOG0979|consen 89 EGYIEIELKDK-DETLTITRLISRDKESKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELLVET 167 (1072)
T ss_pred cceEEEEEecC-CCceEEEEEEeecCCcceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHHHHH
Confidence 68899888766 67899999999999999999999999999999999999999876667899999999999999999999
Q ss_pred HHhhcch---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 036401 165 EQISGSD---ELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAERHLRLQDQLKSLKKEHFLWQLFNIE 241 (1154)
Q Consensus 165 e~~~g~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~~~~~~~~el~~l~~~~~~~~l~~~~ 241 (1154)
+.+.|-. .|.....++......+...++.....+..+..++..++...+...........++-+.....|..+....
T Consensus 168 ekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~ 247 (1072)
T KOG0979|consen 168 EKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHD 247 (1072)
T ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhh
Confidence 9998875 6667777777888888888888888899999999999999988888888888888888778888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 242 KDITKASKDLEAEKRSREEVMRELEHFEDQKRGKRKELAK 281 (1154)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 281 (1154)
.++..+......+..++..+...+..+......++.+..+
T Consensus 248 ~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~e 287 (1072)
T KOG0979|consen 248 REYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKE 287 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHh
Confidence 7777777777777766666666665555555554443333
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=1.7e-49 Score=503.37 Aligned_cols=157 Identities=22% Similarity=0.305 Sum_probs=118.3
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
|+|.+|.|.||+||.+.. +.|.+|+|+|+|||||||||||+||+|||+|..+ ++..+.++|+.|. ..++
T Consensus 1 M~i~~l~l~nf~~~~~~~-~~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~--~~~~~~~~~~~~~--------~~~~ 69 (880)
T PRK02224 1 MRFDRVRLENFKCYADAD-LRLEDGVTVIHGVNGSGKSSLLEACFFALYGSKA--LDDTLDDVITIGA--------EEAE 69 (880)
T ss_pred CeEEEEEEECcccccceE-EecCCCeEEEECCCCCCHHHHHHHHHHHhCCCcc--ccccHHHHHhCCC--------CcEE
Confidence 689999999999999864 6566789999999999999999999999988664 2345678888774 3689
Q ss_pred EEEEEEeCCCceEEEEEEEecCCC----eEEE-ECCccc--cHHHHHHHHH-hcCCccc--cCeeEEecchhhhhhcCCc
Q 036401 88 VRLVYQLGNESELQFTRTITSSGG----SEYR-IDGRVV--NWDEYNAKLR-SLGILVK--ARNFLVFQGDVESIASKNP 157 (1154)
Q Consensus 88 v~~~~~~~~~~~~~i~R~i~~~g~----s~y~-in~~~~--~~~~~~~~l~-~~~i~~~--~~~~~i~Qg~v~~i~~~~p 157 (1154)
|.++|.++ |..+.|.|++.+.|. +.|+ .+|... ...++...+. -+|++.. .+.++|+||+++.|+.++|
T Consensus 70 v~~~f~~~-~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~~~~l~~~p 148 (880)
T PRK02224 70 IELWFEHA-GGEYHIERRVRLSGDRATTAKCVLETPEGTIDGARDVREEVTELLRMDAEAFVNCAYVRQGEVNKLINATP 148 (880)
T ss_pred EEEEEEEC-CEEEEEEEEEecCCCCcccceeEEeCCCccccChHHHHHHHHHHHCCCHHHhcceeEeeccChHHHHcCCH
Confidence 99999875 778999999976553 2343 333221 2223333322 1355432 2345789999999999999
Q ss_pred hHHHHHHHHhhcchhhhHH
Q 036401 158 KELTALLEQISGSDELKRE 176 (1154)
Q Consensus 158 ~~~~~~~e~~~g~~~~~~~ 176 (1154)
.+|+.+|++++|+..|...
T Consensus 149 ~~R~~ii~~l~~l~~~e~~ 167 (880)
T PRK02224 149 SDRQDMIDDLLQLGKLEEY 167 (880)
T ss_pred HHHHHHHHHHhCCHHHHHH
Confidence 9999999999999776543
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=4.6e-46 Score=474.00 Aligned_cols=167 Identities=22% Similarity=0.301 Sum_probs=126.3
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccc-cccccccchhhhcccchhhhcccceE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTG-QLRGGQLKDLIYAYDDKEKEQKGRRA 86 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~-~~r~~~~~~~I~~g~~~~~~~~~~~a 86 (1154)
|+|.+|.|.||+||.+. .|.|.+|||+|+||||||||||++||+||||+..+ ..|+....++|+.|. ..|
T Consensus 1 m~i~~l~i~nf~~~~~~-~i~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~ 71 (880)
T PRK03918 1 MKIEELKIKNFRSHKSS-VVEFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGG--------SGT 71 (880)
T ss_pred CeeEEEEEeCccCccCc-eEecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCC--------CCE
Confidence 68999999999999975 46677789999999999999999999999987543 356666678998764 379
Q ss_pred EEEEEEEeCCCceEEEEEEEecCCCeEEEE-CCc---cccHHHHHHHHHh-cCCccccCeeEEecchhhhhhcCCchHHH
Q 036401 87 FVRLVYQLGNESELQFTRTITSSGGSEYRI-DGR---VVNWDEYNAKLRS-LGILVKARNFLVFQGDVESIASKNPKELT 161 (1154)
Q Consensus 87 ~v~~~~~~~~~~~~~i~R~i~~~g~s~y~i-n~~---~~~~~~~~~~l~~-~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~ 161 (1154)
+|.++|..+ |..++|.|.+.++ .+.+++ +|. ..+.+++...+.. ++.++..+.++++||++..|+. +|.+|.
T Consensus 72 ~v~~~f~~~-~~~~~i~R~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~~~-~~~~r~ 148 (880)
T PRK03918 72 EIELKFEKN-GRKYRIVRSFNRG-ESYLKYLDGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAILE-SDESRE 148 (880)
T ss_pred EEEEEEEEC-CeEEEEEEEEcCC-ceEEEECCCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHHhc-CcHHHH
Confidence 999999754 7899999999764 344434 553 2234455555443 1212212345789999999986 899999
Q ss_pred HHHHHhhcchhhhHHHHHHHHHHHH
Q 036401 162 ALLEQISGSDELKREYEVLEDEKGK 186 (1154)
Q Consensus 162 ~~~e~~~g~~~~~~~~~~~~~~~~~ 186 (1154)
.+|+.++|++.|...++.+......
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (880)
T PRK03918 149 KVVRQILGLDDYENAYKNLGEVIKE 173 (880)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999998888766654433
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.1e-45 Score=475.34 Aligned_cols=196 Identities=22% Similarity=0.302 Sum_probs=140.6
Q ss_pred ceeEEEEecceecc----CceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-ccccccchhhhcccchhhhccc
Q 036401 9 KIHRLELENFKSYK----GLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLKDLIYAYDDKEKEQKG 83 (1154)
Q Consensus 9 ~i~~l~l~nFks~~----~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~~~~~~I~~g~~~~~~~~~ 83 (1154)
.|++|.|.||+||+ +.++|+|++|||+||||||||||||++||+|||+|..+. .+|. .+||.+. ..+.+.
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~---~~i~~~~--~~~~~~ 76 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQIIDFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGN---TFVHDPK--VAQETD 76 (1311)
T ss_pred ccceeeeeceecCCCccccceeeecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCc---eEecCCC--cCccHh
Confidence 58899999999996 467888888999999999999999999999999876543 3332 3565321 112234
Q ss_pred ceEEEEEEEEeCCCceEEEEEEEecCC------------CeEEEECCccccHH----HHH-HHHHhcCCccccCee--EE
Q 036401 84 RRAFVRLVYQLGNESELQFTRTITSSG------------GSEYRIDGRVVNWD----EYN-AKLRSLGILVKARNF--LV 144 (1154)
Q Consensus 84 ~~a~v~~~~~~~~~~~~~i~R~i~~~g------------~s~y~in~~~~~~~----~~~-~~l~~~~i~~~~~~~--~i 144 (1154)
..|+|.++|.+.+|..++|.|++...+ ...|+.||..++.. +|. .+...+||+.....+ |+
T Consensus 77 ~~a~V~l~F~~~~g~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~~~f~~vi~~ 156 (1311)
T TIGR00606 77 VRAQIRLQFRDVNGEECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKAVLNNVIFC 156 (1311)
T ss_pred hhheeEEEEEcCCCCEEEEEeeeeeeeccCcccchhhhhhheecCCCceeeccccHHHHHHHHHHHhCCCHHHHhhceee
Confidence 579999999877799999999884321 13466788765443 664 344567887655444 44
Q ss_pred ecchhhhhhcCCchHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 145 FQGDVESIASKNPKELTALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAER 217 (1154)
Q Consensus 145 ~Qg~v~~i~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~~ 217 (1154)
+||++.++ .+.|++|.++|++++|+..|...++.+......... .++.+..++..++..++.+.+
T Consensus 157 ~Qge~~~~-~~~~~~rk~~~d~if~~~~y~k~~~~~~~~~k~~~~-------~~~~~~~~~~~~~~~~~~~~~ 221 (1311)
T TIGR00606 157 HQEDSNWP-LSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQ-------KVQEHQMELKYLKQYKEKACE 221 (1311)
T ss_pred CCcccccc-cCChHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHH
Confidence 59999754 579999999999999999999998887776665544 344444445555554444443
No 13
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=6.9e-44 Score=450.98 Aligned_cols=169 Identities=29% Similarity=0.421 Sum_probs=135.5
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
|+|.+|.|.||+||.+. .|.|.+|+|+|+|||||||||||+||+||||+.. |+....++|+.|. ..|+
T Consensus 1 M~i~~l~l~NF~s~~~~-~i~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~---~~~~~~~~i~~~~--------~~~~ 68 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDS-EIEFDTGINIITGKNGAGKSSIVDAIRFALFTDK---RTEKIEDMIKKGK--------NNLE 68 (895)
T ss_pred CeEEEEEEeCccCCCCc-eEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCc---ccccHHHHhhCCC--------CeEE
Confidence 68999999999999975 5777788999999999999999999999998763 3445688898874 3799
Q ss_pred EEEEEEeCCCceEEEEEEEecCCC-----eEEEECCccccH--HHHHHHHH--hcCCcccc--CeeEEecchhhhhhcCC
Q 036401 88 VRLVYQLGNESELQFTRTITSSGG-----SEYRIDGRVVNW--DEYNAKLR--SLGILVKA--RNFLVFQGDVESIASKN 156 (1154)
Q Consensus 88 v~~~~~~~~~~~~~i~R~i~~~g~-----s~y~in~~~~~~--~~~~~~l~--~~~i~~~~--~~~~i~Qg~v~~i~~~~ 156 (1154)
|.++|..+ |..+.|.|.+.+.|. ..|++||++++. .++...+. -+|++.+. +.++++||++..|+.++
T Consensus 69 V~l~f~~~-g~~y~i~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~~~ 147 (895)
T PRK01156 69 VELEFRIG-GHVYQIRRSIERRGKGSRREAYIKKDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLISGD 147 (895)
T ss_pred EEEEEEEC-CEEEEEEEEEecCCCCCCceEEEecCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccchHHHHhCC
Confidence 99999864 789999999976543 246679987763 47777664 35655432 23478899999999999
Q ss_pred chHHHHHHHHhhcchhhhHHHHHHHHHHHHHHH
Q 036401 157 PKELTALLEQISGSDELKREYEVLEDEKGKAEE 189 (1154)
Q Consensus 157 p~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~ 189 (1154)
|.+|+.+|++++|+..|...|+.+......+..
T Consensus 148 ~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 180 (895)
T PRK01156 148 PAQRKKILDEILEINSLERNYDKLKDVIDMLRA 180 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888776665554443
No 14
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-41 Score=423.33 Aligned_cols=173 Identities=32% Similarity=0.471 Sum_probs=134.2
Q ss_pred CceeEEEEecceeccCceee-cCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceE
Q 036401 8 GKIHRLELENFKSYKGLQII-GPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRA 86 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i-~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a 86 (1154)
|+|.+|.|.||+||.+.++. .|..|+|+|+||||||||||||||+|||+|..+.+++.+..++|+.|+. .+
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~~~~~~~~i~~g~~--------~~ 72 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAFSLDDLIRAGEK--------SA 72 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCccchhhhHHHhcCCc--------cE
Confidence 68999999999999966533 2556899999999999999999999999998876556777889998853 49
Q ss_pred EEEEEEEeCCCceEEEEEEEecCCCe-----E-EEECCccccH--HHHHHHH-HhcCCccc--cCeeEEecchhhhhhcC
Q 036401 87 FVRLVYQLGNESELQFTRTITSSGGS-----E-YRIDGRVVNW--DEYNAKL-RSLGILVK--ARNFLVFQGDVESIASK 155 (1154)
Q Consensus 87 ~v~~~~~~~~~~~~~i~R~i~~~g~s-----~-y~in~~~~~~--~~~~~~l-~~~~i~~~--~~~~~i~Qg~v~~i~~~ 155 (1154)
+|.++|. .+|..+.|.|.+.++++. . -..+|..+.. .++...+ ..+|++.+ -+.+++.||+++.|+.+
T Consensus 73 ~V~l~F~-~~g~~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~ 151 (908)
T COG0419 73 SVELEFE-VNGKKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKS 151 (908)
T ss_pred EEEEEEE-ECCEEEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhc
Confidence 9999999 558999999998877651 1 1225554432 3565554 33455432 12347889999999999
Q ss_pred CchHHHHHHHHhhcchhhhHHHHHHHHHHHHHHH
Q 036401 156 NPKELTALLEQISGSDELKREYEVLEDEKGKAEE 189 (1154)
Q Consensus 156 ~p~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~ 189 (1154)
+|.+|..+|++++|+..|..-+..+......+..
T Consensus 152 ~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~ 185 (908)
T COG0419 152 KPKERKEILDELFGLEKYEKLSELLKEVIKEAKA 185 (908)
T ss_pred CcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988777776665555544
No 15
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=100.00 E-value=1.6e-34 Score=363.72 Aligned_cols=182 Identities=24% Similarity=0.333 Sum_probs=130.6
Q ss_pred CceeEEEEecceeccCceeecC----C--CCeEEEEcCCCCCHHHHHHHHHHHhCcccccc-cc-cccchhhhcccchhh
Q 036401 8 GKIHRLELENFKSYKGLQIIGP----F--SDFTAIIGPNGAGKSNLMDAISFVLGVRTGQL-RG-GQLKDLIYAYDDKEK 79 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~----~--~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~-r~-~~~~~~I~~g~~~~~ 79 (1154)
|+|.+|.|.||+||.+.++|+| + .|+++|+||||||||||||||||+||+..+.+ +. ..+.++++.|+
T Consensus 1 Mk~~~l~~~nf~s~~~~~~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~---- 76 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDT---- 76 (1047)
T ss_pred CcceEEEeecceeEcCCceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCC----
Confidence 6899999999999998776754 2 47999999999999999999999999987753 22 34577777664
Q ss_pred hcccceEEEEEEEEeCCCceEEEEEEEec-----CCC---e---EEEE-CCcccc--HHHHHHHHH-hcCCccc--cCee
Q 036401 80 EQKGRRAFVRLVYQLGNESELQFTRTITS-----SGG---S---EYRI-DGRVVN--WDEYNAKLR-SLGILVK--ARNF 142 (1154)
Q Consensus 80 ~~~~~~a~v~~~~~~~~~~~~~i~R~i~~-----~g~---s---~y~i-n~~~~~--~~~~~~~l~-~~~i~~~--~~~~ 142 (1154)
..|+|+++|..+ |..+.|.|.+.+ +|. . -|.+ +|..+. ..++...+. -+|++.+ .+.+
T Consensus 77 ----~~~~v~~~F~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~~~F~~~v 151 (1047)
T PRK10246 77 ----AECLAEVEFEVK-GEAYRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSM 151 (1047)
T ss_pred ----cceEEEEEEEEC-CeEEEEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCHHHhhhhe
Confidence 369999999655 678888876532 221 0 1222 343332 235544332 2455442 3445
Q ss_pred EEecchhhhhhcCCchHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 143 LVFQGDVESIASKNPKELTALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKK 198 (1154)
Q Consensus 143 ~i~Qg~v~~i~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (1154)
+++||++..|+.++|.+|..+|++++|+..|..-...+..+.......+......+
T Consensus 152 ~l~QG~f~~fl~a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l 207 (1047)
T PRK10246 152 LLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQA 207 (1047)
T ss_pred eeccccHHHHHhCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999998777777766666555544443333
No 16
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-33 Score=359.40 Aligned_cols=178 Identities=25% Similarity=0.271 Sum_probs=125.6
Q ss_pred CceeEEEEecceeccCceeecCCC--CeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccce
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFS--DFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRR 85 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~--~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~ 85 (1154)
|+|.+|+|+||+||.+.++|+|.. |+++|+||||||||||||||||||+|.++.. ++ .+.+..+. ...+...
T Consensus 1 M~~~~L~l~nf~s~~~~~~idF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~--~~-~~~~~~~~---~~~~~~~ 74 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRR--SE-VIRSLNSL---YAAPSEA 74 (1042)
T ss_pred CeeeEEEEeCeeccCCCceeeecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCC--Cc-cccccchh---hcCCCCC
Confidence 689999999999999987786655 8999999999999999999999999876532 11 12222221 1223457
Q ss_pred EEEEEEEEeCCCceEEEEEEEec-----CCCeEEE---E----CCcccc--HHHHHHHHH-hcCCcccc--CeeEEecch
Q 036401 86 AFVRLVYQLGNESELQFTRTITS-----SGGSEYR---I----DGRVVN--WDEYNAKLR-SLGILVKA--RNFLVFQGD 148 (1154)
Q Consensus 86 a~v~~~~~~~~~~~~~i~R~i~~-----~g~s~y~---i----n~~~~~--~~~~~~~l~-~~~i~~~~--~~~~i~Qg~ 148 (1154)
|+|+++|..+ |..+.|.|.+.+ +|...+. + +|..+. .+++...+. -+|++.+. +.++++||+
T Consensus 75 ~~v~l~F~~~-g~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F~~~~~l~Qg~ 153 (1042)
T TIGR00618 75 AFAELEFSLG-TKIYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLPQGE 153 (1042)
T ss_pred eEEEEEEEEC-CEEEEEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHHhhheeecccc
Confidence 8999999755 778887777642 2222211 1 233332 246666553 46776542 234778999
Q ss_pred hhhhhcCCchHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHH
Q 036401 149 VESIASKNPKELTALLEQISGSDELKREYEVLEDEKGKAEEKSA 192 (1154)
Q Consensus 149 v~~i~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~ 192 (1154)
+..|+.++|.+|..+|++++|+..|......+..........+.
T Consensus 154 ~~~fl~a~~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~ 197 (1042)
T TIGR00618 154 FAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAE 197 (1042)
T ss_pred hHHHHhCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998777666665554444333
No 17
>PRK04863 mukB cell division protein MukB; Provisional
Probab=100.00 E-value=1.2e-33 Score=354.85 Aligned_cols=350 Identities=16% Similarity=0.180 Sum_probs=191.4
Q ss_pred CCCCCceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccc--cccccchhhhcccch--hh
Q 036401 4 LLSPGKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQL--RGGQLKDLIYAYDDK--EK 79 (1154)
Q Consensus 4 ~~~~~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~--r~~~~~~~I~~g~~~--~~ 79 (1154)
|+..|+|++|.|.||.+|.+.+ +.|.+++|+|+|||||||||+|+||+++|++..+.+ ++....+.-+..... -+
T Consensus 1 ~~~~~ki~~l~l~N~~~~~~~~-~~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~~~~~~~~~~~r~l~~ 79 (1486)
T PRK04863 1 MIERGKFRSLTLVNWNGFFART-FDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (1486)
T ss_pred CCCCceeeEEEEecccCccceE-EEecCCeEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcccccccccccccchhc
Confidence 5668899999999999999874 655556999999999999999999999997655432 211100000000000 00
Q ss_pred hcccceEEEEEEEEeCCCceEEEEEEEe--cCC-C----eEEEECCc--------------------cccHHHHHHHHHh
Q 036401 80 EQKGRRAFVRLVYQLGNESELQFTRTIT--SSG-G----SEYRIDGR--------------------VVNWDEYNAKLRS 132 (1154)
Q Consensus 80 ~~~~~~a~v~~~~~~~~~~~~~i~R~i~--~~g-~----s~y~in~~--------------------~~~~~~~~~~l~~ 132 (1154)
+..+..||+.+.|.++.+..+++.=.+. .++ . ..|++.|- +.+..++...+..
T Consensus 80 ~l~~~~~Y~~lef~d~~~~~~~~GV~l~~~a~~~~~~~~~~F~i~~~~~~v~~~d~l~~~~~~~~~~~~ti~Elk~~i~e 159 (1486)
T PRK04863 80 KLKAGVCYAALDVVNSRGQRVLVGVRLQQVAGRDRKVDIKPFAIQGLPDSVQPTDLLTETVNERQARVLTLNELKDKAAA 159 (1486)
T ss_pred ccCCCceEEEEEEEeCCceEEEEEEEEEeecCCCCCcCceeEEEecCccccChHHHHHHhhcccccccCCHHHHHHHHHH
Confidence 1123468888888776554344333332 221 1 12444321 2222233333321
Q ss_pred -cCCccc--cC-----eeEEecchhhhhh---------------------------------------------------
Q 036401 133 -LGILVK--AR-----NFLVFQGDVESIA--------------------------------------------------- 153 (1154)
Q Consensus 133 -~~i~~~--~~-----~~~i~Qg~v~~i~--------------------------------------------------- 153 (1154)
.|+... .. ..++.||.+..++
T Consensus 160 ~~Gl~~~qF~ri~~Y~~~Ll~qG~f~~~L~a~~dR~kF~kLf~taiy~~i~~~i~~fl~~yll~e~~~v~~~i~~m~~~l 239 (1486)
T PRK04863 160 LEGVQFKQFNSITDYHSLMFDLGIIPRRLRSSSDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAAL 239 (1486)
T ss_pred hcCCceeeeccHHHHHHHHHHCCCchhhhhccchHHHHHHHHHHHHHhhHHHhHHHHHHHHcCCCChhhhHHHHHHHHHH
Confidence 121110 00 0012233333211
Q ss_pred -----------------------------------cCCchHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 154 -----------------------------------SKNPKELTALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKK 198 (1154)
Q Consensus 154 -----------------------------------~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (1154)
...|.+|+.+||+++| |+.++.++.+++..++.++....+.+
T Consensus 240 ~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag---~r~rk~eA~kkLe~tE~nL~rI~diL 316 (1486)
T PRK04863 240 RENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALE---LRRELYTSRRQLAAEQYRLVEMAREL 316 (1486)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1127899999999977 55889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 199 RTVVLERKQKKEQKEEAERHLRLQDQLKSLKKEHFLWQLFNIEKDITKASKDLEAEKRSREEVMRELEHFEDQKRGKRKE 278 (1154)
Q Consensus 199 ~~l~~ei~~lk~~~~~a~~~~~~~~el~~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 278 (1154)
..+...+.+|+.+++.+.+|..+..+...+ ...+..+...+..+...+......+..+...+.....++..++.+
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyleL~ee~lr~-----q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEee 391 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLNLVQTALRQ-----QEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEE 391 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988762221 222333334444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 036401 279 LAKYLKEIAQCEKKIAERNNRLDKSQPELLKLNEEMSRIN---SKIKSSKKELERKREERRKHANDIKELQKGIQDLTGK 355 (1154)
Q Consensus 279 ~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~~~~i~~~~---~~i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~ 355 (1154)
+..+..++..+...+..++..+..++..+..+..-...+. =....+...+..+...+......+..++.++..++..
T Consensus 392 LeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~ 471 (1486)
T PRK04863 392 VDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAA 471 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333333322222110 0112233444444444444444444444444444444
Q ss_pred HHHHHHh
Q 036401 356 LEELNEK 362 (1154)
Q Consensus 356 ~~~~~~~ 362 (1154)
+..+...
T Consensus 472 leql~~~ 478 (1486)
T PRK04863 472 HSQFEQA 478 (1486)
T ss_pred HHHHHHH
Confidence 4444443
No 18
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-27 Score=282.01 Aligned_cols=172 Identities=22% Similarity=0.333 Sum_probs=130.9
Q ss_pred CCceeEEEEecceeccCc--eeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccc-cccccccchhhhcccchhhhccc
Q 036401 7 PGKIHRLELENFKSYKGL--QIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTG-QLRGGQLKDLIYAYDDKEKEQKG 83 (1154)
Q Consensus 7 ~~~i~~l~l~nFks~~~~--~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~-~~r~~~~~~~I~~g~~~~~~~~~ 83 (1154)
|..|.+|.|.|.+||++. ++|.||+|+|+||||||||||||+.|+.++.-|..+ ..+| ..|||... ...-..
T Consensus 1 Ms~i~klsI~GIRSf~~~d~~~i~F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpnsk~---~~FiHdpk--Iage~e 75 (1294)
T KOG0962|consen 1 MSSIDKLSIRGIRSFDDKDRNTIEFFSPLTLIVGANGTGKTTIIECLKYATTGELPPNSKG---GSFIHDPK--VAGETE 75 (1294)
T ss_pred CchhHhhHhhcccccCCcccceeeecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCCcC---CCCCCCcc--ccchhh
Confidence 458999999999999865 578999999999999999999999999999866544 3555 34777532 112223
Q ss_pred ceEEEEEEEEeCCCceEEEEEEEecCCC-----------eEEEE-CCccccHH----HHHH-HHHhcCCccccCeeEEec
Q 036401 84 RRAFVRLVYQLGNESELQFTRTITSSGG-----------SEYRI-DGRVVNWD----EYNA-KLRSLGILVKARNFLVFQ 146 (1154)
Q Consensus 84 ~~a~v~~~~~~~~~~~~~i~R~i~~~g~-----------s~y~i-n~~~~~~~----~~~~-~l~~~~i~~~~~~~~i~Q 146 (1154)
-.|.|.+.|.+.+|..+++.|++.-... .-+.+ .|..++++ |+.. +..++|++...-+++||.
T Consensus 76 v~AqvkL~f~~~~G~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~~d~d~~~~~~lGVskAIl~~VIFc 155 (1294)
T KOG0962|consen 76 VRAQVKLAFTDVNGETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRSADLDAEMPLHLGVSKAILENVIFC 155 (1294)
T ss_pred hhheeeeeeecCCCcEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchhhhhhHHHHHhcCCcHHHHhhhhee
Confidence 4799999999999999999999865321 12333 45555543 5544 447788887666678888
Q ss_pred chhhhhhc-CCchHHHHHHHHhhcchhhhHHHHHHHHH
Q 036401 147 GDVESIAS-KNPKELTALLEQISGSDELKREYEVLEDE 183 (1154)
Q Consensus 147 g~v~~i~~-~~p~~~~~~~e~~~g~~~~~~~~~~~~~~ 183 (1154)
++=+..|. +.|+.+.+-|+++++...|....+.++..
T Consensus 156 HQEdS~WPLsEp~~LKkkfD~IF~~tky~KAld~~kk~ 193 (1294)
T KOG0962|consen 156 HQEDSTWPLSEPKNLKKKFDDIFSATKYTKALDSLKKL 193 (1294)
T ss_pred cccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777 66999999999999999998887766654
No 19
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=100.00 E-value=1.8e-26 Score=296.03 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=63.8
Q ss_pred ceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccc--------cccccccchhhhcccchhhh
Q 036401 9 KIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTG--------QLRGGQLKDLIYAYDDKEKE 80 (1154)
Q Consensus 9 ~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~--------~~r~~~~~~~I~~g~~~~~~ 80 (1154)
++.++-|.||--|.+. ++.|.+|+|+|+||||||||||||||.|+|+..+. ..|+.+|.++|+.|.. .+.
T Consensus 3 ~~~R~gliN~~~~~~~-~~~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~~r~~~~~l~~g~~-~~~ 80 (1353)
T TIGR02680 3 RPHRAGLVNLWYYDEQ-EFWFRDGRLLLRGNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDSRKRMAWNLLLGGV-NHD 80 (1353)
T ss_pred eeeeEEEEEeccccce-EEecCCCeEEEECCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCccccHHHHHcCCCC-CCC
Confidence 4678999999999974 57566679999999999999999998888765432 1477889999998752 122
Q ss_pred cccceEEEEEEEEeCC
Q 036401 81 QKGRRAFVRLVYQLGN 96 (1154)
Q Consensus 81 ~~~~~a~v~~~~~~~~ 96 (1154)
+..++++|++.+.+++
T Consensus 81 ~~~~y~~~e~~~~~~~ 96 (1353)
T TIGR02680 81 ERVGYLWLEFGRVEDD 96 (1353)
T ss_pred CcceeEEEEeeccCCC
Confidence 2345666677666543
No 20
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.97 E-value=1.6e-30 Score=272.92 Aligned_cols=126 Identities=39% Similarity=0.681 Sum_probs=98.7
Q ss_pred ceeEEEEecceeccCc-eeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccc-cccccccchhhhcccchhhhcccceE
Q 036401 9 KIHRLELENFKSYKGL-QIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTG-QLRGGQLKDLIYAYDDKEKEQKGRRA 86 (1154)
Q Consensus 9 ~i~~l~l~nFks~~~~-~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~-~~r~~~~~~~I~~g~~~~~~~~~~~a 86 (1154)
+|.+|+|.|||+|.+. ..+.|.+++|+|+||||||||||+|||+||||++.. .+|+....++|+.. ........|
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~---~~~~~~~~a 77 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKS---GSDQDSKSA 77 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--B---TTB---SEE
T ss_pred CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccc---ccccccccc
Confidence 5899999999999744 445555569999999999999999999999998766 48999999999871 112345689
Q ss_pred EEEEEEEeCCC------ceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCcc
Q 036401 87 FVRLVYQLGNE------SELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILV 137 (1154)
Q Consensus 87 ~v~~~~~~~~~------~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~ 137 (1154)
.|++.|++.+. .++.|.|.+.++|.+.|++||++++.+++...+...++.+
T Consensus 78 ~V~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~ 134 (220)
T PF02463_consen 78 EVELIFDNSDEEFELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISP 134 (220)
T ss_dssp EEEEEEECTTEESSSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999987642 3699999999999999999999999999999998777665
No 21
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.97 E-value=4.2e-23 Score=275.62 Aligned_cols=83 Identities=20% Similarity=0.445 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 935 FKQKMDALISEIEKTAP-NLKALDQYEALLEKERTVTEEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIY 1013 (1154)
Q Consensus 935 ~~~~l~~l~~~i~~l~~-n~~a~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~ 1013 (1154)
++.+|..+...|+.+++ |+.|+++|+.+..++..+...++++...+..+...+..+...+...|...|.+|+..|..+|
T Consensus 970 l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf 1049 (1179)
T TIGR02168 970 ARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVF 1049 (1179)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777764 77777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhh
Q 036401 1014 KQLT 1017 (1154)
Q Consensus 1014 ~~~~ 1017 (1154)
..++
T Consensus 1050 ~~~~ 1053 (1179)
T TIGR02168 1050 PKLF 1053 (1179)
T ss_pred HHHh
Confidence 7665
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.96 E-value=7.3e-26 Score=273.81 Aligned_cols=186 Identities=19% Similarity=0.229 Sum_probs=136.5
Q ss_pred CCceeEEEEecceeccCc-eeecCC-CCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccc
Q 036401 7 PGKIHRLELENFKSYKGL-QIIGPF-SDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGR 84 (1154)
Q Consensus 7 ~~~i~~l~l~nFks~~~~-~~i~~~-~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~ 84 (1154)
|++|++|.|+||+||++. +.+.|. .|+|+|+||||||||||++||+|||||.+. |+....+++..+ ...
T Consensus 1 ~~~~~~l~l~nf~s~~~~~~~i~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~--~~~~~~~~~~~~-------~~~ 71 (562)
T PHA02562 1 MLKFKKIRYKNILSVGNQPIEIQLDKVKKTLITGKNGAGKSTMLEALTFALFGKPF--RDIKKGQLINSI-------NKK 71 (562)
T ss_pred CceEEEEEEEcccccCCCceEEEEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCc--CcCCHHHhhccC-------CCC
Confidence 679999999999999985 356544 479999999999999999999999988763 332234555432 134
Q ss_pred eEEEEEEEEeCCCceEEEEEEEecCCCeEEEECCccc----cHHHHHHHHHh-cCCccccCee----EEecchhhhhhcC
Q 036401 85 RAFVRLVYQLGNESELQFTRTITSSGGSEYRIDGRVV----NWDEYNAKLRS-LGILVKARNF----LVFQGDVESIASK 155 (1154)
Q Consensus 85 ~a~v~~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~----~~~~~~~~l~~-~~i~~~~~~~----~i~Qg~v~~i~~~ 155 (1154)
.++|.++|..+ |..+.|.|.+.. +...|++||.++ +.+++...+.. +|++. ..| +++||.+..++.+
T Consensus 72 ~~~v~l~f~~~-~~~y~i~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~--~~f~~~v~l~q~~f~~f~~~ 147 (562)
T PHA02562 72 DLLVELWFEYG-EKEYYIKRGIKP-NVFEIYCNGKLLDESASSKDFQKYFEQMLGMNY--KSFKQIVVLGTAGYVPFMQL 147 (562)
T ss_pred cEEEEEEEEEC-CEEEEEEEeccC-CeEEEecCCEEEeccccHHHHHHHHHHHHCCCH--HHHhHHheeccCchhhHhcC
Confidence 68999999765 789999998863 345667798875 35688887765 34433 334 5689999999999
Q ss_pred CchHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 156 NPKELTALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKKRTVVLER 205 (1154)
Q Consensus 156 ~p~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei 205 (1154)
+|.+++.+|+.++|+..|.......+.....++..+......+..+..++
T Consensus 148 ~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i 197 (562)
T PHA02562 148 SAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQI 197 (562)
T ss_pred ChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887666666665555554444443444443333
No 23
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.95 E-value=2.9e-25 Score=263.02 Aligned_cols=183 Identities=24% Similarity=0.298 Sum_probs=151.1
Q ss_pred ceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEEE
Q 036401 9 KIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAFV 88 (1154)
Q Consensus 9 ~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~v 88 (1154)
+|.+|.|.||++|.+.. +.|.+|||+|+|||||||||||+||+|++|++. ..++|+.|+. .|.|
T Consensus 1 Ml~~l~i~nf~~~~~~~-i~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~-------~~~~i~~~~~--------~~~v 64 (563)
T TIGR00634 1 MLTELRINNFALIRVLT-VEFERGLTVLTGETGAGKSMIIDALSLLGGQRA-------GASRVRSGEN--------RAVV 64 (563)
T ss_pred CceEEEEcceeeeeeeE-EecCCCeEEEECCCCCCHHHHHHHHHHHhCcCc-------hHHHhcCCCC--------eEEE
Confidence 37899999999998754 667778999999999999999999999999874 3567887753 6888
Q ss_pred EEEEEeCC-------------------CceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchh
Q 036401 89 RLVYQLGN-------------------ESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDV 149 (1154)
Q Consensus 89 ~~~~~~~~-------------------~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v 149 (1154)
..+|.+.+ +++++|+|.|+.+|.|.|+|||++|+.+.+.+++ ..++.+||++
T Consensus 65 ~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~~ii~R~i~~~grs~~~iNg~~v~~~~l~~l~---------~~li~i~gQ~ 135 (563)
T TIGR00634 65 EGRFTTESLDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYLNGKPVSASSLLEFT---------SELLDLHGQH 135 (563)
T ss_pred EEEEccCCCchHHHHHHHhcCCCcCCCCCeEEEEEEEcCCCceEEEECCEEccHHHHHHHh---------cCeEEEECch
Confidence 88886422 2478999999999999999999999999888875 3467889999
Q ss_pred hhhhcCCchHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 150 ESIASKNPKELTALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAE 216 (1154)
Q Consensus 150 ~~i~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~ 216 (1154)
+.+..++|..++.+++.++|+..+...|..+...+..+...+.........+..++..++.+.++.+
T Consensus 136 ~~~~l~~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 136 DQQLLFRPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHhcCHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888888888888777776666666666666666666655544
No 24
>PRK10869 recombination and repair protein; Provisional
Probab=99.95 E-value=8.8e-25 Score=255.09 Aligned_cols=183 Identities=23% Similarity=0.251 Sum_probs=146.2
Q ss_pred ceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEEE
Q 036401 9 KIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAFV 88 (1154)
Q Consensus 9 ~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~v 88 (1154)
+|.+|.|+||++|... .|.|.+|||+|+||||||||+|+|||+|+||+++. .++|++|+ ..|+|
T Consensus 1 ML~~L~I~nf~~i~~~-~i~f~~glnvitGetGaGKS~ildAi~~llG~r~~-------~~~ir~g~--------~~a~V 64 (553)
T PRK10869 1 MLAQLTISNFAIVREL-EIDFQSGMTVITGETGAGKSIAIDALGLCLGGRAE-------ASMVRPGA--------TRADL 64 (553)
T ss_pred CccEEEEcccccceee-EEecCCCcEEEECCCCCChHHHHHHHHHHhCCCcc-------cccccCCC--------CcEEE
Confidence 3789999999999765 47777889999999999999999999999997652 56788775 37999
Q ss_pred EEEEEeCC---------------CceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhh
Q 036401 89 RLVYQLGN---------------ESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIA 153 (1154)
Q Consensus 89 ~~~~~~~~---------------~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~ 153 (1154)
+.+|...+ +++++|+|.+.++|.|.|+|||++|+.+++.++...+ +-.+|+.+...
T Consensus 65 e~~F~~~~~~~~~~~l~~~~~~~~~~~~i~R~i~~~g~s~~~INg~~v~~~~l~~l~~~l---------i~ihgQ~~~~~ 135 (553)
T PRK10869 65 CARFSLKDTPAALRWLEDNQLEDGNECLLRRVISSDGRSRGFINGTPVPLSQLRELGQLL---------IQIHGQHAHQL 135 (553)
T ss_pred EEEEecCCChHHHHHHHhcCCCCCCeEEEEEEEecCCcceEEECCeeccHHHHHHHHHhh---------hheeCcChHHH
Confidence 99996522 3479999999999999999999999999888875422 33455556667
Q ss_pred cCCchHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 154 SKNPKELTALLEQISGSDELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAE 216 (1154)
Q Consensus 154 ~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~ 216 (1154)
.++|..++.+|+..+|...+...|..+...+..+...+............++.-++.+.++.+
T Consensus 136 ll~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~ 198 (553)
T PRK10869 136 LLKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELN 198 (553)
T ss_pred hcCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999987788888888888877777666665555666666666666665544
No 25
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.94 E-value=1.5e-18 Score=230.93 Aligned_cols=394 Identities=19% Similarity=0.241 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 036401 179 VLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAERHLRLQDQLKSLKKEHFLWQLFNIEKDITKASKDLEAEKRSR 258 (1154)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~~~~~~~~el~~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 258 (1154)
.....+..+...+....+.+..+...+..++.+.+.+.+|.....++..+...+..+.+......+..+...+..+..++
T Consensus 167 ~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (1164)
T TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQL 246 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777778888888899999999999999999999999888887777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 259 EEVMRELEHFEDQKRGKRKELAKYLKEIAQCEKKIAERN-NRLDKSQPELLKLNEEMSRINSKIKSSKKELERKREERRK 337 (1154)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~-~~l~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~l~~~~~~ 337 (1154)
..+..++..+..++..+...+..+...+..+...+..+. ..+..+...+..+..++..+..++..+...+..+...+..
T Consensus 247 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 326 (1164)
T TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776666666666666665555555555555443 3444455555555666666666666666666666656555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 338 HANDIKELQKGIQDLTGKLEELNEKSRDGAGRLPLLDTQLTEYFQIKEEAGMKTAKLRDEKEVLDREQHADLEVLKNLEA 417 (1154)
Q Consensus 338 ~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~ 417 (1154)
...++..+...+..+...+..+...+..... ....+..........+......+..+......+...+..+..
T Consensus 327 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 399 (1164)
T TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTE-------EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555655555555555555555544432211 111111111122222333333333444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 418 NLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELRSMQDKHRDSRQKYENLKSKIGEIENQLRELKADRH 497 (1154)
Q Consensus 418 ~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~l~~l~~~l~~l~~~~~ 497 (1154)
++..+..++..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+...+.
T Consensus 400 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~ 479 (1164)
T TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444333333333333333333322
Q ss_pred HHHHH-HHHHHHHHHHhhhcCCcceecccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHHHHHHHhCC---eEe
Q 036401 498 ENERD-AKLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIKAVLFAVGN---TLV 573 (1154)
Q Consensus 498 ~~~~~-~~~~~~l~~l~~~~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~ai~~~lg~---~lv 573 (1154)
..... ..+...+..+........|.. ... ......+... .+.+.+.|++...+...|..||..++|+ +||
T Consensus 480 ~l~~~l~~l~~~~~~l~~~~~~~~~~~----~~~-~~i~~~~~~~-~~g~~g~l~dli~v~~~y~~Aie~~lg~~l~~iv 553 (1164)
T TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERV----RGG-RAVEEVLKAS-IQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVV 553 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc----cch-HHHHHHHhcC-CCCceecHHHhcCcCHHHHHHHHHHhhhhhCCEE
Confidence 21110 111111222221110011100 000 0000001111 1123334777777888999999999996 489
Q ss_pred cCChHHHHh-hhc
Q 036401 574 CDGLDEAKV-LSW 585 (1154)
Q Consensus 574 ve~~~~A~~-i~~ 585 (1154)
|+|.++|.. |.|
T Consensus 554 v~~~~~a~~~i~~ 566 (1164)
T TIGR02169 554 VEDDAVAKEAIEL 566 (1164)
T ss_pred ECCHHHHHHHHHH
Confidence 999999876 444
No 26
>PF13514 AAA_27: AAA domain
Probab=99.94 E-value=2.5e-17 Score=211.71 Aligned_cols=163 Identities=16% Similarity=0.205 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCCCCCC
Q 036401 960 EALLEKERTVTEEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPF 1039 (1154)
Q Consensus 960 ~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1154)
..+..++..+..++.++......+.-...-+.......-......|...+..+|..||...+ ..+.+....+
T Consensus 936 a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~p~vl~~As~~f~~LT~G~Y------~~l~~d~d~~-- 1007 (1111)
T PF13514_consen 936 AELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYREERQPPVLARASEYFSRLTGGRY------SRLRVDEDGD-- 1007 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCC------ceeeeccccC--
Confidence 33444444444444444443333332222222222222223456778888999999974332 2233322111
Q ss_pred CcccceeecCCCCcccccccCchhhHHHHHHHHHHhhccc-----CCCCeEEeeccccccchhhHHHHHHHHHhcccCCC
Q 036401 1040 LHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSY-----KPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGT 1114 (1154)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~-----~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~ 1114 (1154)
+..+.+..++....++..||+|-+==+-||+.||+... .|.||++ |+|+++.|+.....++++|.++
T Consensus 1008 --~~~l~~~~~~G~~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~Il-DD~fvnfDd~R~~~~l~~L~~l----- 1079 (1111)
T PF13514_consen 1008 --KPVLVVVRADGERVPVEELSRGTRDQLYLALRLALAELLAEQGEPLPFIL-DDIFVNFDDERARAALELLAEL----- 1079 (1111)
T ss_pred --cccceEEecCCeEeeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEe-eCCccccCHHHHHHHHHHHHHh-----
Confidence 11123333344457889999999999999999998644 3556555 9999999999999999999999
Q ss_pred CCCCCCCCCCCeeEEEEEechhHHHhccceEE
Q 036401 1115 RGNQDADEGNGFQSIVISLKDSFYDKAEALVG 1146 (1154)
Q Consensus 1115 ~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~G 1146 (1154)
+ ..+||||.||++.+++.+..++|
T Consensus 1080 -------s-~~~QVI~FTch~~l~~~a~~~~~ 1103 (1111)
T PF13514_consen 1080 -------S-RRRQVIYFTCHEHLVELAREVFG 1103 (1111)
T ss_pred -------c-cCCeEEEEeccHHHHHHHHHhcC
Confidence 3 67899999999999997766644
No 27
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.93 E-value=6e-17 Score=208.39 Aligned_cols=176 Identities=20% Similarity=0.326 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 397 EKEVLDREQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELRSMQDKHRDSRQKYE 476 (1154)
Q Consensus 397 ~l~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 476 (1154)
.+..+......+..+...+..++..+..++..+..++..+...+..+..++..+..++..+...+..+..++..+...+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (1163)
T COG1196 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE 456 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444445555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh---hcCCcceecccccccCchhHHHHHHHhhccCCCeEEec
Q 036401 477 NLKSKIGEIENQLRELKADRHENERD-AKLSQAVETLKR---LFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVE 552 (1154)
Q Consensus 477 ~l~~~l~~l~~~l~~l~~~~~~~~~~-~~~~~~l~~l~~---~~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd 552 (1154)
.+...+..+...+..+.......... ......+..+.. .+.|+...+ ..+...+.+++|+ |++
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~Gv~G~-----v~~ 523 (1163)
T COG1196 457 ELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVL--------EALESGLPGVYGP-----VAE 523 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH--------HHHhccCCCccch-----HHH
Confidence 55555555554444444433332111 111112222221 111222111 0111124455555 777
Q ss_pred ChhhHHHHHHHHHHHhCC---eEecCChHHHHh-hhc
Q 036401 553 DENTGKECIKAVLFAVGN---TLVCDGLDEAKV-LSW 585 (1154)
Q Consensus 553 ~~~~a~~~i~ai~~~lg~---~lvve~~~~A~~-i~~ 585 (1154)
...+..+|..|+..++|+ .|||+|..+|.. |.|
T Consensus 524 li~v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~ 560 (1163)
T COG1196 524 LIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEF 560 (1163)
T ss_pred hcCcChHHHHHHHHHcccccCCeeeCChHHHHHHHHH
Confidence 777777999999999996 489999888865 443
No 28
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=2.8e-24 Score=228.20 Aligned_cols=157 Identities=58% Similarity=0.917 Sum_probs=133.2
Q ss_pred eeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEEEE
Q 036401 10 IHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAFVR 89 (1154)
Q Consensus 10 i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~v~ 89 (1154)
|++|.|.|||||.+.+.++|++++++|+||||||||||++||+|++|+.++..|+....++|+.|.. ...++..+.|.
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~--~~~~~~~~~v~ 78 (247)
T cd03275 1 LKRLELENFKSYKGRHVIGPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARV--GKPDSNSAYVT 78 (247)
T ss_pred CcEEEEECccccCCCeeecCCCCeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCcc--ccCCCceEEEE
Confidence 6799999999999888888888899999999999999999999999987767898889999998753 12345689999
Q ss_pred EEEEeCCCceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCch-HHHHHHHHhh
Q 036401 90 LVYQLGNESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPK-ELTALLEQIS 168 (1154)
Q Consensus 90 ~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~-~~~~~~e~~~ 168 (1154)
++|.+.++..++++|.+ +.|.+.|++||+.++..++.+++..+|+++..++|+|+||+|+.|+.++|. .+...+.+++
T Consensus 79 ~~f~~~~~~~~~~~~~~-~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS 157 (247)
T cd03275 79 AVYEDDDGEEKTFRRII-TGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLS 157 (247)
T ss_pred EEEEcCCCcEEEEEEEE-ECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcC
Confidence 99988767777777777 567789999999999999999999999999888999999999999999983 3333344444
Q ss_pred c
Q 036401 169 G 169 (1154)
Q Consensus 169 g 169 (1154)
|
T Consensus 158 ~ 158 (247)
T cd03275 158 G 158 (247)
T ss_pred H
Confidence 4
No 29
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.90 E-value=9e-14 Score=179.20 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=48.9
Q ss_pred CchhhHHHHHHHHHHhhccc-CC-CCe---EEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1060 LSGGEKTVAALALLFSIHSY-KP-SPF---FILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1060 lSgGek~~~~la~~~a~~~~-~p-~~~---~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
=|=|.=-++-+.+.+|+-.+ +| +|| |.+||+ .-|||.|+..+++|+... +.++|-.+|+
T Consensus 1121 sS~G~syLi~~~~~i~l~~~lr~~~~~~ihwpiDEi-G~L~~~Nv~~l~~~~~~n---------------nI~li~A~P~ 1184 (1201)
T PF12128_consen 1121 SSHGTSYLILCMFFIALTRMLRGDADFRIHWPIDEI-GKLHPNNVKKLLDMCNSN---------------NISLISAFPN 1184 (1201)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCCCeEEEeeehhh-ccCChHHHHHHHHHHHhC---------------CceEEEeCCC
Confidence 38888777777777776543 33 355 568998 569999999999998854 6778888887
Q ss_pred h--hHHHhccceE
Q 036401 1135 D--SFYDKAEALV 1145 (1154)
Q Consensus 1135 ~--~~~~~~d~~~ 1145 (1154)
+ .++.+-...|
T Consensus 1185 ~~~~vl~lF~~rY 1197 (1201)
T PF12128_consen 1185 PDSEVLRLFKNRY 1197 (1201)
T ss_pred CChHHHHHHhhHh
Confidence 4 4444333333
No 30
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=8.6e-23 Score=217.90 Aligned_cols=145 Identities=32% Similarity=0.525 Sum_probs=123.4
Q ss_pred CceeEEEEecceeccCceeec-CCCCeEEEEcCCCCCHHHHHHHHHHHhCcccc-cccccccchhhhcccchhhhcccce
Q 036401 8 GKIHRLELENFKSYKGLQIIG-PFSDFTAIIGPNGAGKSNLMDAISFVLGVRTG-QLRGGQLKDLIYAYDDKEKEQKGRR 85 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~-~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~-~~r~~~~~~~I~~g~~~~~~~~~~~ 85 (1154)
|+|++|.|.|||||++.++++ |.+++|+||||||||||||++||+|+||+..+ .+|.....|+|+.+. ......
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~----~~~~~~ 76 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRG----QAGITK 76 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCC----CCCCcE
Confidence 589999999999999988774 44569999999999999999999999998644 588888889997642 123457
Q ss_pred EEEEEEEEeCC----------CceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcC
Q 036401 86 AFVRLVYQLGN----------ESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASK 155 (1154)
Q Consensus 86 a~v~~~~~~~~----------~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~ 155 (1154)
+.|.++|++++ .+.++|.|.+...+.+.|++|++.+...++.++|..+|+.++++.|+|+||+|++|+++
T Consensus 77 ~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~ 156 (251)
T cd03273 77 ASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM 156 (251)
T ss_pred EEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh
Confidence 89999999853 24899999998777677888988888899999999999988778899999999999987
Q ss_pred C
Q 036401 156 N 156 (1154)
Q Consensus 156 ~ 156 (1154)
.
T Consensus 157 ~ 157 (251)
T cd03273 157 G 157 (251)
T ss_pred H
Confidence 5
No 31
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=1.6e-12 Score=147.37 Aligned_cols=172 Identities=18% Similarity=0.242 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhhcCC-Chh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 935 FKQKMDALISEIEKTAP-NLK--ALDQYEALLEKERTVTEEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSIDR 1011 (1154)
Q Consensus 935 ~~~~l~~l~~~i~~l~~-n~~--a~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~ 1011 (1154)
+...+..+...|..+.. .+. +--.+..++++++........++-...-+.+.|..+++.+... +....+.
T Consensus 793 l~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~-------vi~~A~~ 865 (984)
T COG4717 793 LHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPA-------VIQEASE 865 (984)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH-------HHHHHHH
Confidence 45556666666666632 222 2335666666666666666666666666666666666655544 4455788
Q ss_pred HHHHhhcCCCCCCCceEEEeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHHhhccc----CCCCeEEe
Q 036401 1012 IYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSY----KPSPFFIL 1087 (1154)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~----~p~~~~~l 1087 (1154)
+|..+|..+ ...+.....++ .+.|.........+..||-|=+--+=+|+.||+... -|-||++
T Consensus 866 ~F~hlT~G~------Yt~Iy~~e~~d------~I~V~~~~G~~~~~~ELSqgT~EQLYlAlRfali~~~~~~~~LP~i~- 932 (984)
T COG4717 866 FFMHLTDGR------YTGIYTQEDKD------SIIVEHRAGGSKLAEELSQGTKEQLYLALRFALIHEVRTREPLPFIA- 932 (984)
T ss_pred HHhhccCCc------eeeeecccCCc------eeEEEecccccccHHHHhhhHHHHHHHHHHHHHHhhhccCCCCCeee-
Confidence 899997332 22333332222 234444444557789999999999999999998654 4568876
Q ss_pred eccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHH
Q 036401 1088 DEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYD 1139 (1154)
Q Consensus 1088 DE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~ 1139 (1154)
|.++++.|+....+++.+|.++ + ++.|+|+.||++.+.+
T Consensus 933 DD~fVhFD~~R~~r~~e~l~dl------------s-~~~QviYFTCHe~~~d 971 (984)
T COG4717 933 DDIFVHFDDERAKRMLELLADL------------S-EGNQVIYFTCHEHTCD 971 (984)
T ss_pred ccchhccCHHHHHHHHHHHHHh------------c-cCCeEEEEEechhhhc
Confidence 9999999999999999999999 3 7999999999988854
No 32
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.8e-19 Score=200.50 Aligned_cols=183 Identities=25% Similarity=0.348 Sum_probs=151.5
Q ss_pred eeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEEEE
Q 036401 10 IHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAFVR 89 (1154)
Q Consensus 10 i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~v~ 89 (1154)
|.+|.|+||--+...+ +.|.+|||+|+|.+|+|||-|+|||.++||+++. .++|++|+. .|+|+
T Consensus 2 L~~LsIknfaiIe~L~-leF~~GltVlTGETGAGKSIiidAl~lllG~ra~-------~~~VR~G~~--------~a~v~ 65 (557)
T COG0497 2 LLELSIKNFAIIEELE-LEFEKGLTVLTGETGAGKSIIIDALGLLLGGRAD-------ASLVRHGAK--------RAEVE 65 (557)
T ss_pred CcEEeeeheeeeeeee-eeccCCceEEecCCCCcHhHHHHHHHHHhCCCCC-------cchhcCCCc--------eeEEE
Confidence 6789999999998875 6788899999999999999999999999999864 678998864 79999
Q ss_pred EEEEeCC--------------CceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcC
Q 036401 90 LVYQLGN--------------ESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASK 155 (1154)
Q Consensus 90 ~~~~~~~--------------~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~ 155 (1154)
..|..++ +++++++|.|.++|.|.|||||++|+...+.++- ..++-.+|+.+....+
T Consensus 66 a~F~~~~~~~~~~L~e~gie~~~~iilrR~i~~~GrSr~~INg~~Vs~~~L~~l~---------~~Li~IHGQh~~q~Ll 136 (557)
T COG0497 66 AIFDLDNPPARAWLEENGIEDDEEVILRRVISADGRSRAFINGQPVSLAQLKELG---------QLLIDIHGQHEHQSLL 136 (557)
T ss_pred EEecCCchHHHHHHHHcCCCCcCcEEEEEEEcCCCceeEEECCEEeeHHHHHHHH---------HhhheeeccchHHHhc
Confidence 9997651 2489999999999999999999999999666653 2234468888888899
Q ss_pred CchHHHHHHHHhhcchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 156 NPKELTALLEQISGSDELK-REYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAER 217 (1154)
Q Consensus 156 ~p~~~~~~~e~~~g~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~~ 217 (1154)
+|...+.+++..+|..... ..|......+..+...+.......+....++..|+.+.++.++
T Consensus 137 ~~~~~r~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~ 199 (557)
T COG0497 137 KPELQRQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEE 199 (557)
T ss_pred ChHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999986544 3377777777777777777777777788888888888887763
No 33
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.87 E-value=9.3e-18 Score=203.15 Aligned_cols=160 Identities=26% Similarity=0.384 Sum_probs=105.3
Q ss_pred CceeEEEEecceeccCceee--cCC--CCeEEEEcCCCCCHHHHHHHHHHHhCccccc--ccccc-cc----hhhhcccc
Q 036401 8 GKIHRLELENFKSYKGLQII--GPF--SDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ--LRGGQ-LK----DLIYAYDD 76 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i--~~~--~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~--~r~~~-~~----~~I~~g~~ 76 (1154)
|+|.+|.|.||++|.|.+.+ .|. .|+++|+|||||||||+++||+|||+|..+. .|+.. .. ++|+.+.
T Consensus 1 M~i~~l~l~nf~~~~~~~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~- 79 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQA- 79 (650)
T ss_pred CcccEEEEeceEEEcCCceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccC-
Confidence 68999999999999987555 232 3599999999999999999999999886542 45442 22 3333321
Q ss_pred hhhhcccceEEEEEEEEeCC-C--ceEEEEEEEecCC---CeEE--EECCcccc--HHHHHHHHHhcCCccccCeeEEec
Q 036401 77 KEKEQKGRRAFVRLVYQLGN-E--SELQFTRTITSSG---GSEY--RIDGRVVN--WDEYNAKLRSLGILVKARNFLVFQ 146 (1154)
Q Consensus 77 ~~~~~~~~~a~v~~~~~~~~-~--~~~~i~R~i~~~g---~s~y--~in~~~~~--~~~~~~~l~~~~i~~~~~~~~i~Q 146 (1154)
.+...|+|.++|.... | ..++|+|.|...+ ...+ +.+|.+.. ...+.+++..+ ++.....||+|.
T Consensus 80 ----~~~~~~~V~l~f~~~~~~~~~~y~i~R~w~~~~k~~~~~l~v~~~~~~~~~~~~~~~~~i~~i-lp~~~~~~FfFD 154 (650)
T TIGR03185 80 ----GKTNPASITLTFSVVEGGKRHEYTLVRSWHINNKDVKEKLTVYKDDEEDDSLNDIWDEFINEL-LPLELADLFFFD 154 (650)
T ss_pred ----CCCCCeEEEEEEEEccCCceEEEEEEEEecCCCCCCCCcEEEEECCcccchhhHHHHHHHHHh-CCHhHHHHhccc
Confidence 2356789999997542 3 4688999996442 2222 34663221 12344455432 333334578899
Q ss_pred ch-hhhhhcC-CchH-HHHHHHHhhcchhh
Q 036401 147 GD-VESIASK-NPKE-LTALLEQISGSDEL 173 (1154)
Q Consensus 147 g~-v~~i~~~-~p~~-~~~~~e~~~g~~~~ 173 (1154)
|+ |..|+.. ++.+ +..-+..+.|+..|
T Consensus 155 GE~I~~la~~~~~~~~l~~Ai~~LlGl~~~ 184 (650)
T TIGR03185 155 GEKIEALANPDRLASLLKEAIEVLLGLDLI 184 (650)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhCcHHH
Confidence 99 9998873 3334 66667777777653
No 34
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=7.3e-13 Score=154.58 Aligned_cols=340 Identities=14% Similarity=0.174 Sum_probs=180.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhh
Q 036401 231 EHFLWQLFNIEKDITKASKDLEAEKRSREEVMRELEHFEDQKRGK-RKELAKYLKEIAQCEKKIAERNNRLDKSQPELLK 309 (1154)
Q Consensus 231 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~ 309 (1154)
++..|.-...+..+......+.....++..+...+.......... .......+..-..++.....+......++.++..
T Consensus 316 el~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~ 395 (1293)
T KOG0996|consen 316 ELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQD 395 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555566666666666666655555444443311 1222222222223333334444445555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHhh
Q 036401 310 LNEEMSRINSKIKSSKKELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSRDGAGRLPLLDTQLTEYFQIKEEAGM 389 (1154)
Q Consensus 310 ~~~~i~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 389 (1154)
+..+-...++.+..+.+.+..+..++.+....+.+++...+.....+.....++..+.. +......++.+....+..
T Consensus 396 ~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~---~~~~~~~~l~e~~~~l~~ 472 (1293)
T KOG0996|consen 396 LEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE---LLEKEERELDEILDSLKQ 472 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666665554321 111223344455555556
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 036401 390 KTAKLRDEKEVLDREQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELRSMQDKHR 469 (1154)
Q Consensus 390 ~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 469 (1154)
+...+..++..++.++..+..++.....+++-++.++.-+...-+.......+++..+......+.+....+..+...+.
T Consensus 473 ~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~ 552 (1293)
T KOG0996|consen 473 ETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELP 552 (1293)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66666777777777777777777777777777777777776666666666666666666666666666666666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcCCcceecccccccCchhHHHHHHHhhccCCCe
Q 036401 470 DSRQKYENLKSKIGEIENQLRELKADRHENERD-AKLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDA 548 (1154)
Q Consensus 470 ~l~~~~~~l~~~l~~l~~~l~~l~~~~~~~~~~-~~~~~~l~~l~~~~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~ 548 (1154)
.+..++.+....+..+......+.......... ......+..-... ..|...+. +....+ -|.+++|.
T Consensus 553 ~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~-~kVl~al~---r~kesG---~i~Gf~GR---- 621 (1293)
T KOG0996|consen 553 SLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR-NKVLDALM---RLKESG---RIPGFYGR---- 621 (1293)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHH---HHHHcC---CCCccccc----
Confidence 555555555555555544444333332221000 0011111110000 11111111 110000 13344554
Q ss_pred EEecChhhHHHHHHHHHHHhCC--eEecCChHHHHh-hhc
Q 036401 549 VVVEDENTGKECIKAVLFAVGN--TLVCDGLDEAKV-LSW 585 (1154)
Q Consensus 549 iVvd~~~~a~~~i~ai~~~lg~--~lvve~~~~A~~-i~~ 585 (1154)
.+|.-.+..+|-.||.+++++ .|||++.++|.. |.|
T Consensus 622 -LGDLg~Id~kYDvAIsTac~~LdyiVVdt~e~aq~cI~f 660 (1293)
T KOG0996|consen 622 -LGDLGAIDEKYDVAISTACARLDYIVVDTIETAQECINF 660 (1293)
T ss_pred -cccccccchHHHHHHHHhccccceEEeccHHHHHHHHHH
Confidence 333333445666688888775 699999999976 554
No 35
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.3e-12 Score=145.69 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=35.4
Q ss_pred HHHhhccCCCeEEecChhhHHHHHHHHHHHhCCe---EecCChHHHHhhh
Q 036401 538 VTVAMGKFMDAVVVEDENTGKECIKAVLFAVGNT---LVCDGLDEAKVLS 584 (1154)
Q Consensus 538 v~~~lG~~l~~iVvd~~~~a~~~i~ai~~~lg~~---lvve~~~~A~~i~ 584 (1154)
.++++|+ |++...++..+..|++...|+. +||++.+.|..|.
T Consensus 521 ~ngv~G~-----v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl 565 (1200)
T KOG0964|consen 521 PNGVFGT-----VYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKIL 565 (1200)
T ss_pred cccccee-----hhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHH
Confidence 4566676 8899999999999999999995 8999999998753
No 36
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.1e-12 Score=151.91 Aligned_cols=590 Identities=16% Similarity=0.236 Sum_probs=305.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhhHHHHHHH
Q 036401 237 LFNIEKDITKASKDLEAEKRSREEVMRELEHFEDQKRGKRKELAKYLKEIAQCEKKIAERNNRLDKSQPELLKLNEEMSR 316 (1154)
Q Consensus 237 l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~~~~~i~~ 316 (1154)
+.....++..+..++..+...++....++.....+......++......+...+..+.+ +.++-...........++..
T Consensus 229 i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~ 307 (1141)
T KOG0018|consen 229 IEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEE 307 (1141)
T ss_pred HhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHH
Confidence 33444555555555666666665555555555555556666666666666666666666 55555555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-cc---cCCCCCchhhHHHHHHHHHHHhhhhH
Q 036401 317 INSKIKSSKKELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSR-DG---AGRLPLLDTQLTEYFQIKEEAGMKTA 392 (1154)
Q Consensus 317 ~~~~i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~~~~~~~~~ 392 (1154)
.+..+...+.........+..++.++..+.........+++....... .+ ...+..+.....++.... ..++.
T Consensus 308 ~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~---~~el~ 384 (1141)
T KOG0018|consen 308 IEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA---LEELE 384 (1141)
T ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---HHHHH
Confidence 666666666666666666666666666666666666666555554211 11 111111111011110000 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036401 393 KLRDEKEVLDREQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELRSMQDKHRDSR 472 (1154)
Q Consensus 393 ~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~l~ 472 (1154)
-+.......+..+..+.+....++.++..+...+.++......+...+..+...+.++...+..+.........+...++
T Consensus 385 ~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n 464 (1141)
T KOG0018|consen 385 VLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELN 464 (1141)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHH
Confidence 22222222222222222223333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHH-------------HHHH-------------------HHHHHH
Q 036401 473 QKYENLKSKIGEIENQ-------------LRELKADRH-------------ENER-------------------DAKLSQ 507 (1154)
Q Consensus 473 ~~~~~l~~~l~~l~~~-------------l~~l~~~~~-------------~~~~-------------------~~~~~~ 507 (1154)
.++.....++..+... +..++...- .... .....+
T Consensus 465 ~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk~~daIiVdte~ta~~ 544 (1141)
T KOG0018|consen 465 EELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLFPGVYGRVIDLCQPTQKKYEIAVTVVLGKNMDAIIVDTEATARD 544 (1141)
T ss_pred HHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhCCCccchhhhcccccHHHHHHHHHHHHhcccceEEeccHHHHHH
Confidence 3333333333322211 111111000 0000 011112
Q ss_pred HHHHHhh-------hcC-----------------CcceecccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHHH
Q 036401 508 AVETLKR-------LFQ-----------------GVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIKA 563 (1154)
Q Consensus 508 ~l~~l~~-------~~~-----------------gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~a 563 (1154)
.|.-++. ++| | .-.+.|.+++ ++.|+.||..++| +++|||+..+|+.
T Consensus 545 CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr~~~g-~rlv~Dvi~y-e~e~eka~~~a~g---n~Lvcds~e~Ar~---- 615 (1141)
T KOG0018|consen 545 CIQYLKEQRLEPMTFLPLDSIRVKPVNEKLRELGG-VRLVIDVINY-EPEYEKAVQFACG---NALVCDSVEDARD---- 615 (1141)
T ss_pred HHHHHHHhccCCccccchhhhhcCcccccccCcCC-eEEEEEecCC-CHHHHHHHHHHhc---cceecCCHHHHHH----
Confidence 2222222 111 2 2245677777 4799999999999 5779999999985
Q ss_pred HHHHhCCeEecCChHHHHhhhccCCceeEEeeCCeEeecCceeeccCCCCcCcccccCCHHHHHHHHHHHHHHHHHHHHH
Q 036401 564 VLFAVGNTLVCDGLDEAKVLSWSGERFRVVTVDGILLTKAGTMTGGTTGGMEARSKQWDDKKIEGLKRKKEQYESELEEL 643 (1154)
Q Consensus 564 i~~~lg~~lvve~~~~A~~i~~~~~~~~~Vtl~G~~~~~~G~~tgg~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l 643 (1154)
.+.|+-+ -++.++..| .+++..|.+ +|..+|.. .... ...........|..++.++...-.
T Consensus 616 --l~y~~~~------r~k~valdG---tl~~ksGlm---sGG~s~~~-wdek--~~~~L~~~k~rl~eel~ei~~~~~-- 676 (1141)
T KOG0018|consen 616 --LAYGGEI------RFKVVALDG---TLIHKSGLM---SGGSSGAK-WDEK--EVDQLKEKKERLLEELKEIQKRRK-- 676 (1141)
T ss_pred --hhhcccc------cceEEEeee---eEEecccee---cCCccCCC-cCHH--HHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 2223211 122233344 567888833 44445544 5321 111112223455666666555222
Q ss_pred hhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 644 GSIREMQLRESETSGKISGLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKIDRRTTDINKLERRI 723 (1154)
Q Consensus 644 ~~~~~~~~~~~~l~~~i~~l~~~l~~l~~el~~l~~~l~~l~~el~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~i 723 (1154)
.+......+..++..+..+..++..+...+...+.++.....++......+..+...+......+..|+.++..++..+
T Consensus 677 -e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 677 -EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRI 755 (1141)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334445667777788888888888887778788888888888887777888888888888888999999999998887
Q ss_pred -HHHHHHHHHHhHhhhCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 036401 724 -NEITDRLYRDFSESVGV-ANIREYEENQLKAAQNVAEERLNLSNQLAKLKYQLEYEQKRDVESRIKKLESSLSTLENDL 801 (1154)
Q Consensus 724 -~~l~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 801 (1154)
..+...+.- . +.. .... ..+.......++..++..+..++......-...++...+..+++++.++..+..+-
T Consensus 756 f~~f~~~igv--~--ir~Yee~~-~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e 830 (1141)
T KOG0018|consen 756 FKGFCRRIGV--R--IREYEERE-LQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDE 830 (1141)
T ss_pred HHHhhhhcCe--e--eehHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHH
Confidence 556655411 1 221 1122 24444555566777777777777776654334455566667777777777666666
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 802 KQVKKKEGDVKSATET-ATGDITRWKEEMRGWKSNSDECEKEIQEWEKQASAATTSLSKLNRQIN 865 (1154)
Q Consensus 802 ~~~~~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 865 (1154)
..+...+.+. +.++. -......+..++.++......+..++..+...+..+...+.....+..
T Consensus 831 ~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~ 894 (1141)
T KOG0018|consen 831 EAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERH 894 (1141)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 6666555555 33332 133344455555555555555555555555444444444444444333
No 37
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=4.4e-20 Score=198.47 Aligned_cols=154 Identities=29% Similarity=0.407 Sum_probs=121.8
Q ss_pred eeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEEEE
Q 036401 10 IHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAFVR 89 (1154)
Q Consensus 10 i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~v~ 89 (1154)
|.+|.|+||++|.+. .+.|.+++|+|+||||||||||++||.|++|+++ .|.....++|+.|.+ .+.|+
T Consensus 1 l~~l~i~nfr~~~~~-~~~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~--~r~~~~~~~i~~~~~--------~~~v~ 69 (270)
T cd03242 1 LKSLELRNFRNYAEL-ELEFEPGVTVLVGENAQGKTNLLEAISLLATGKS--HRTSRDKELIRWGAE--------EAKIS 69 (270)
T ss_pred CcEEEEeCCcCccee-EEecCCCeEEEECCCCCCHHHHHHHHHHhccCCC--CCCCCHHHHHhcCCC--------CEEEE
Confidence 578999999999975 4666668999999999999999999999999865 566667899998753 78999
Q ss_pred EEEEeCCCceEEEEEEEecCCCeEEEECCccccH-HHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHHHHHHHhh
Q 036401 90 LVYQLGNESELQFTRTITSSGGSEYRIDGRVVNW-DEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQIS 168 (1154)
Q Consensus 90 ~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~~~-~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~e~~~ 168 (1154)
++|.+. +..+.|+|.+..+|.+.|+|||..++. .++...+ ..+++|++...++.++|..++.+|+.+.
T Consensus 70 ~~f~~~-~~~~~i~~~~~~~~~~~~~ing~~~~~l~~l~~~l----------~~i~~~~~~~~l~~~~p~~rr~~lD~~~ 138 (270)
T cd03242 70 AVLERQ-GGELALELTIRSGGGRKARLNGIKVRRLSDLLGVL----------NAVWFAPEDLELVKGSPADRRRFLDRLL 138 (270)
T ss_pred EEEEeC-CCeEEEEEEEEcCCceEEEECCeeccCHHHHhCcC----------cEEEEecchhhhhcCCHHHHHHHHHHHH
Confidence 999876 456899999988888999999998875 4443322 2467888888899999999999999998
Q ss_pred cchhhhHHHHHHHHHHHHH
Q 036401 169 GSDELKREYEVLEDEKGKA 187 (1154)
Q Consensus 169 g~~~~~~~~~~~~~~~~~~ 187 (1154)
+. ....|......+.++
T Consensus 139 ~~--~~~~y~~~~~~~~~~ 155 (270)
T cd03242 139 GQ--LEPAYAHVLSEYQKA 155 (270)
T ss_pred Hh--cCHHHHHHHHHHHHH
Confidence 83 334454444444333
No 38
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.9e-20 Score=202.06 Aligned_cols=132 Identities=29% Similarity=0.428 Sum_probs=112.0
Q ss_pred eeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEEEE
Q 036401 10 IHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAFVR 89 (1154)
Q Consensus 10 i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~v~ 89 (1154)
|.+|.|.||+||.+. .+.|.++||+|+||||||||||++||+|++|+++ ..++|+.|.. .+.|.
T Consensus 1 l~~l~i~nf~~~~~~-~i~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~-------~~~~~~~~~~--------~~~v~ 64 (276)
T cd03241 1 LLELSIKNFALIEEL-ELDFEEGLTVLTGETGAGKSILLDALSLLLGGRA-------SADLIRSGAE--------KAVVE 64 (276)
T ss_pred CcEEEEeCccceeee-EEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCC-------hHHHhhCCCC--------eEEEE
Confidence 578999999999875 4667778999999999999999999999999873 3578887643 57788
Q ss_pred EEEEeCC---------------CceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhc
Q 036401 90 LVYQLGN---------------ESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIAS 154 (1154)
Q Consensus 90 ~~~~~~~---------------~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~ 154 (1154)
.+|.+.+ +++++|+|+++.+|.+.|+|||++++.+++.+++ ..++..||+++.+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~Ing~~vsl~~l~~i~---------~~li~i~gq~~~~~l 135 (276)
T cd03241 65 GVFDISDEEEAKALLLELGIEDDDDLIIRREISRKGRSRYFINGQSVTLKLLRELG---------SLLVDIHGQHDHQNL 135 (276)
T ss_pred EEEecCCchHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEECCEEECHHHHHHHH---------HhheEEECcHHHHHh
Confidence 8886532 3579999999999999999999999999988875 245778999988888
Q ss_pred CCchHHHHHHHH
Q 036401 155 KNPKELTALLEQ 166 (1154)
Q Consensus 155 ~~p~~~~~~~e~ 166 (1154)
++|..++.+|++
T Consensus 136 ~~~~~~~~lLD~ 147 (276)
T cd03241 136 LNPERQLDLLDG 147 (276)
T ss_pred cChHHhHhhhhC
Confidence 999999999988
No 39
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.7e-11 Score=140.82 Aligned_cols=101 Identities=18% Similarity=0.294 Sum_probs=63.6
Q ss_pred cccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHHHHHHHhCCeEecCChHHHHhhhccCCceeEEeeCCeEeec
Q 036401 523 MTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIKAVLFAVGNTLVCDGLDEAKVLSWSGERFRVVTVDGILLTK 602 (1154)
Q Consensus 523 l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~ai~~~lg~~lvve~~~~A~~i~~~~~~~~~Vtl~G~~~~~ 602 (1154)
..+|+.. ++.+..|++.++| +.+||++.++|++ |.++-.--++.|...| .+|.+.|.+ .
T Consensus 604 al~Li~y-d~~l~~amefvFG---~tlVc~~~d~AKk------------Vaf~~~i~~rsVTl~G---DV~dP~Gtl--T 662 (1174)
T KOG0933|consen 604 ALSLIGY-DDELKKAMEFVFG---STLVCDSLDVAKK------------VAFDPKIRTRSVTLEG---DVYDPSGTL--T 662 (1174)
T ss_pred HHHHhcC-CHHHHHHHHHHhC---ceEEecCHHHHHH------------hhcccccccceeeecC---ceeCCCCcc--c
Confidence 3456676 4689999999999 5779999999997 2222222223344344 578888976 3
Q ss_pred CceeeccCCCCcCccc-ccCCHHHHHHHHHHHHHHHHHHHHHhh
Q 036401 603 AGTMTGGTTGGMEARS-KQWDDKKIEGLKRKKEQYESELEELGS 645 (1154)
Q Consensus 603 ~G~~tgg~~~~~~~~~-~~~~~~~i~~l~~~~~~l~~~l~~l~~ 645 (1154)
+|+..+|... ...-. ......+++....+++.++.++..+++
T Consensus 663 GGs~~~~a~~-L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~ 705 (1174)
T KOG0933|consen 663 GGSRSKGADL-LRQLQKLKQAQKELRAIQKELEALERELKSLEA 705 (1174)
T ss_pred CCCCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666542 11000 111235667777788888887777776
No 40
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.82 E-value=4.6e-11 Score=131.97 Aligned_cols=107 Identities=23% Similarity=0.240 Sum_probs=69.8
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccc-------cc--ccccccchhhhccc---
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRT-------GQ--LRGGQLKDLIYAYD--- 75 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~-------~~--~r~~~~~~~I~~g~--- 75 (1154)
.++-+|.+.|+..|.- .++....+-.+++|..||||||++|||.-+|-+.. +. -|-.++..+|...-
T Consensus 15 FRL~~iqliNWGTF~T-~~~~~T~~G~LvTG~~GSGKSTLIDAITavLlP~~kl~~N~AA~A~t~~RSL~tYi~G~~raq 93 (1104)
T COG4913 15 FRLSRIQLINWGTFHT-VDIPVTREGILVTGGSGSGKSTLIDAITAVLLPQGKLRFNSAAQANTPRRSLVTYIRGAWRAQ 93 (1104)
T ss_pred eeeeEEEEeeccccce-eeeeEeccceEEecCCCCCchhHHHHHHHHhcccchhhcccccccCCchhHHHHHHHHHHhhc
Confidence 4678999999999983 33421222256999999999999999999985422 11 23334555554210
Q ss_pred ---------chhhhcccceEEEEEEEEeCCCceEEEEEEEecC--CCeEEE
Q 036401 76 ---------DKEKEQKGRRAFVRLVYQLGNESELQFTRTITSS--GGSEYR 115 (1154)
Q Consensus 76 ---------~~~~~~~~~~a~v~~~~~~~~~~~~~i~R~i~~~--g~s~y~ 115 (1154)
++.-++...+.-|-++|.|+.|.++++--.++.. ..++|+
T Consensus 94 ~~~~~~~~~~~~LR~~a~YSlv~~~~~NG~~~~~TL~~iF~LK~S~~~~~~ 144 (1104)
T COG4913 94 EDPLQDQIVSTYLRPRATYSLVGLTYSNGEGVEHTLVAIFYLKSSDISSYY 144 (1104)
T ss_pred cCccccceeeeeeccccceEEEEEEeecCCCeeEEEEEEEEeeccCCCcee
Confidence 0111445566778999999878888877776643 234555
No 41
>PRK10869 recombination and repair protein; Provisional
Probab=99.82 E-value=3.6e-17 Score=191.40 Aligned_cols=199 Identities=17% Similarity=0.222 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 935 FKQKMDALISEIEKTAPNL-KALDQYEALLEKERTVT---EEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSID 1010 (1154)
Q Consensus 935 ~~~~l~~l~~~i~~l~~n~-~a~e~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~ 1010 (1154)
++.++..+..--+++|+.+ ..++-++++..++..+. ..++.+......+.+.+..+-......-..+...+...+.
T Consensus 301 ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~ 380 (553)
T PRK10869 301 LEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLIT 380 (553)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999854 45666667777776654 4677777777777777777766666666677777777777
Q ss_pred HHHHHhhcCCCCCCCceEEEeccCCCCC-CCccc---ceeec-CCCCccccc-ccCchhhHHHHHHHHHHhhcccCCCCe
Q 036401 1011 RIYKQLTRSNTHPLGGTAYLNLENEDDP-FLHGI---KYTAM-PPTKRFRDM-EQLSGGEKTVAALALLFSIHSYKPSPF 1084 (1154)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~-~~~~~~~~~-~~lSgGek~~~~la~~~a~~~~~p~~~ 1084 (1154)
.....| +++ ++.+.+.+.....+ ...|+ +|... .||...+++ +.|||||+++++||+.+++..+.|||+
T Consensus 381 ~~L~~L----~m~-~a~f~v~~~~~~~~~~~~G~d~veF~~~~n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~~~~~~~ 455 (553)
T PRK10869 381 ESMHEL----SMP-HGKFTIDVKFDPEHLSADGADRIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKMETPA 455 (553)
T ss_pred HHHHHc----CCC-CcEEEEEEecCCCCCCCCCceEEEEEEecCCCCCcchhhhhCCHHHHHHHHHHHHHHhccCCCCCE
Confidence 777777 466 67777766422211 23454 44444 355555554 589999999999999999988889999
Q ss_pred EEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEeecC
Q 036401 1085 FILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVYRDS 1151 (1154)
Q Consensus 1085 ~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~~~~ 1151 (1154)
+||||||+|||+.....+.++|..+ . .+.|+|+|||++.+...||.+|-|.+..
T Consensus 456 li~DEpd~gld~~~~~~v~~~l~~l------------~-~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 456 LIFDEVDVGISGPTAAVVGKLLRQL------------G-ESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHH------------h-cCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 9999999999999999999999999 3 5799999999999999999999998754
No 42
>PRK00064 recF recombination protein F; Reviewed
Probab=99.82 E-value=6.8e-19 Score=196.26 Aligned_cols=155 Identities=24% Similarity=0.375 Sum_probs=126.5
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
|+|.+|.|.||++|.+.+ +.|.+++|+|+||||||||||++||++++++++ .|+....++|+.|.+ .+.
T Consensus 1 M~i~~l~i~nfr~~~~~~-l~~~~~~~~i~G~NgsGKT~lleai~~l~~~~s--~r~~~~~~li~~g~~--------~~~ 69 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELD-LELSPGVNVLVGENGQGKTNLLEAIYLLAPGRS--HRTARDKELIRFGAE--------AAV 69 (361)
T ss_pred CEEEEEEEeCCCcccceE-EEecCCeEEEECCCCCCHHHHHHHHHHhCCCCC--ccCCChhHHHhcCCC--------cEE
Confidence 589999999999999764 566778999999999999999999999988765 688888999998853 688
Q ss_pred EEEEEEeCCCceEEEEEEEecCCCeEEEECCccc-cHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHHHHHHH
Q 036401 88 VRLVYQLGNESELQFTRTITSSGGSEYRIDGRVV-NWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQ 166 (1154)
Q Consensus 88 v~~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~-~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~e~ 166 (1154)
|..+|.+. +..+.|.|.+.++|.+.|+|||+++ +..++...+ + .+++.++...++..+|..|+.+|+.
T Consensus 70 v~~~~~~~-~~~~~i~~~~~~~~~~~~~ing~~~~~~~~l~~~~---------~-~v~~~p~~~~l~~~~p~~RR~fLD~ 138 (361)
T PRK00064 70 IHGRVEKG-GRELPLGLEIDKKGGRKVRINGEPQRKLAELAGLL---------N-VVLFTPEDLRLVKGGPSERRRFLDR 138 (361)
T ss_pred EEEEEEeC-CcEEEEEEEEEcCCceEEEECCccccCHHHHhhhc---------c-EEEEccchhhhhcCCHHHHHHHHHH
Confidence 99999754 4568899999887878999999999 677777764 2 4678888889999999999999999
Q ss_pred hhcchhhhHHHHHHHHHHHH
Q 036401 167 ISGSDELKREYEVLEDEKGK 186 (1154)
Q Consensus 167 ~~g~~~~~~~~~~~~~~~~~ 186 (1154)
.++ .+...|..+...+.+
T Consensus 139 ~~~--~~~~~y~~~~~~y~k 156 (361)
T PRK00064 139 LLF--QIEPVYASALSQYER 156 (361)
T ss_pred HHh--ccCHHHHHHHHHHHH
Confidence 887 334445444444433
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.81 E-value=7.5e-16 Score=186.68 Aligned_cols=89 Identities=27% Similarity=0.245 Sum_probs=74.5
Q ss_pred CCCcccccccCchhhHHHHHHHHHHhhcc------cCCCCeEEeeccc-cccchhhHHHHHHHHHhcccCCCCCCCCCCC
Q 036401 1050 PTKRFRDMEQLSGGEKTVAALALLFSIHS------YKPSPFFILDEVD-AALDNLNVAKVAGFIRSKSCEGTRGNQDADE 1122 (1154)
Q Consensus 1050 ~~~~~~~~~~lSgGek~~~~la~~~a~~~------~~p~~~~~lDE~d-~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~ 1122 (1154)
.|....++..|||||+++++||++|++.. ..+||++|||||+ ++||+.++..+..+|..+
T Consensus 459 ~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~------------- 525 (562)
T PHA02562 459 RGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL------------- 525 (562)
T ss_pred CCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-------------
Confidence 33334568899999999999999998421 1469999999997 789999999999999987
Q ss_pred CCCeeEEEEEechhHHHhccceEEEeecCC
Q 036401 1123 GNGFQSIVISLKDSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1123 ~~~~q~i~it~~~~~~~~~d~~~GV~~~~~ 1152 (1154)
.+.++|+|||++.++..||+++.|...++
T Consensus 526 -~~~~iiiish~~~~~~~~d~~~~l~~~~~ 554 (562)
T PHA02562 526 -KDTNVFVISHKDHDPQKFDRHLKMEKVGR 554 (562)
T ss_pred -CCCeEEEEECchhchhhhhcEEEEEEECC
Confidence 35789999999989999999988877543
No 44
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.80 E-value=1.7e-16 Score=188.55 Aligned_cols=199 Identities=15% Similarity=0.189 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHhhcCCChh-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 935 FKQKMDALISEIEKTAPNLK-ALDQYEALLEKERTVT---EEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSID 1010 (1154)
Q Consensus 935 ~~~~l~~l~~~i~~l~~n~~-a~e~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~ 1010 (1154)
++.++..+....++.|+.+. .+..++.+..++..+. ..++.+......+.+.+.++.......-..+...+...+.
T Consensus 306 le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~ 385 (563)
T TIGR00634 306 IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVE 385 (563)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888887543 4555556666666543 3567777777777777776666666666666666666677
Q ss_pred HHHHHhhcCCCCCCCceEEEeccCCCCC------CCcc---cceeecC-CCCccccc-ccCchhhHHHHHHHHHHhhccc
Q 036401 1011 RIYKQLTRSNTHPLGGTAYLNLENEDDP------FLHG---IKYTAMP-PTKRFRDM-EQLSGGEKTVAALALLFSIHSY 1079 (1154)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~-~~~~~~~~-~~lSgGek~~~~la~~~a~~~~ 1079 (1154)
..+..| +++ ++.+.+.+.....+ ...| ++|...+ ||...+++ ..|||||+++++||+.+++...
T Consensus 386 ~~l~~L----~m~-~~~f~v~~~~~~~~~~~~~~~~~G~d~v~f~~~~n~g~~~~pl~~~lSgGe~~rv~la~~l~~~~~ 460 (563)
T TIGR00634 386 QELKAL----AME-KAEFTVEIKTSLPSGAKARAGAYGADQVEFLFSANTGEPVKPLAKVASGGELSRVMLALKVVLSSS 460 (563)
T ss_pred HHHHhC----CCC-CcEEEEEEeecCccccccCCCCCCceEEEEEEecCCCCCCCChhhhcCHhHHHHHHHHHHHhhCCC
Confidence 666666 355 56666554321111 1235 4454443 56666666 6899999999999999998866
Q ss_pred CCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEeecC
Q 036401 1080 KPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVYRDS 1151 (1154)
Q Consensus 1080 ~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~~~~ 1151 (1154)
.|||++||||||++||+..+..+.++|..+ . .+.|||+|||++.++..||++|.|.+..
T Consensus 461 ~~~~~lilDEp~~gld~~~~~~~~~~l~~l------------~-~~~~vi~iTH~~~~~~~ad~~~~l~k~~ 519 (563)
T TIGR00634 461 AAVTTLIFDEVDVGVSGETAQAIAKKLAQL------------S-ERHQVLCVTHLPQVAAHADAHFKVEKEG 519 (563)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHH------------h-cCCEEEEEEChHHHHHhcCeEEEEEEcc
Confidence 778999999999999999999999999999 3 4789999999999999999999998753
No 45
>PRK14079 recF recombination protein F; Provisional
Probab=99.79 E-value=2e-18 Score=191.35 Aligned_cols=150 Identities=25% Similarity=0.353 Sum_probs=115.7
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
|+|.+|.|.||++|.+.+ +.|.+++|+|+||||||||||++||+|++|+ +.|+....++|+.|.. .++
T Consensus 1 M~i~~l~l~nfRn~~~~~-l~f~~g~nvi~G~NGsGKT~lLeAI~~~~~g---s~r~~~~~~lI~~g~~--------~~~ 68 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPT-LAFPPGVTAVVGENAAGKTNLLEAIYLALTG---ELPNGRLADLVRFGEG--------EAW 68 (349)
T ss_pred CEEEEEEEeccCCcccce-EEeCCCeEEEECCCCCCHHHHHHHHHHHhcC---CCCCCcHHhheecCCC--------cEE
Confidence 589999999999999875 6677789999999999999999999999987 3677888999998853 578
Q ss_pred EEEEEEeCCCceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHHHHHHHh
Q 036401 88 VRLVYQLGNESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQI 167 (1154)
Q Consensus 88 v~~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~e~~ 167 (1154)
|...|...+ ....+...+.. |++.|+|||++++..++..++ +..++.|+++.-|. .+|..|+.+|+..
T Consensus 69 v~~~~~~~~-~~~~~~~~~~~-~~~~~~ing~~~~~~~l~~~~---------~~v~~~p~d~~li~-~~p~~RR~fLD~~ 136 (349)
T PRK14079 69 VHAEVETGG-GLSRLEVGLGP-GRRELKLDGVRVSLRELARLP---------GAVLIRPEDLELVL-GPPEGRRAYLDRL 136 (349)
T ss_pred EEEEEEeCC-CeEEEEEEEEc-CceEEEECCeecCHHHHHhhh---------cEEEEecCchHhhh-CCHHHHHHHHHHH
Confidence 888887553 33445555543 457899999999888777654 33455677765544 6999999999998
Q ss_pred hcchhhhHHHHHHHHH
Q 036401 168 SGSDELKREYEVLEDE 183 (1154)
Q Consensus 168 ~g~~~~~~~~~~~~~~ 183 (1154)
.+ .+...|......
T Consensus 137 l~--~l~~~y~~~l~~ 150 (349)
T PRK14079 137 LS--RLSARYAALLSA 150 (349)
T ss_pred HH--hcCHHHHHHHHH
Confidence 76 344455444443
No 46
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.79 E-value=1e-18 Score=186.67 Aligned_cols=143 Identities=30% Similarity=0.481 Sum_probs=117.4
Q ss_pred eeEEEEecceeccCceeecCCCC-eEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEEE
Q 036401 10 IHRLELENFKSYKGLQIIGPFSD-FTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAFV 88 (1154)
Q Consensus 10 i~~l~l~nFks~~~~~~i~~~~~-~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~v 88 (1154)
|++|+|+|||||.+..++.++++ ||+|+||||||||||++||+|+||...+.+|...+.++|+.|.. .....++|
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~----~~~~~~~v 76 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSG----PSVMSAYV 76 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCC----CCCceEEE
Confidence 67999999999999887755555 99999999999999999999999977655777777899998743 12357899
Q ss_pred EEEEEeCCC------ceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCc
Q 036401 89 RLVYQLGNE------SELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNP 157 (1154)
Q Consensus 89 ~~~~~~~~~------~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p 157 (1154)
+++|++.+. .++.+.|++.. ....|.++++.++..++...+..+|+...+..|++.||++..+..+.+
T Consensus 77 ~i~~~~~~~~~~~~~~~~~i~r~ig~-~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~ 150 (243)
T cd03272 77 EIIFDNSDNRFPIDKEEVRLRRTIGL-KKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQ 150 (243)
T ss_pred EEEEEcCCCccCCCCCEEEEEEEEEC-CCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccc
Confidence 999987532 57889999965 346889999888999999999999988766667789999999877643
No 47
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.72 E-value=5.8e-13 Score=161.58 Aligned_cols=124 Identities=19% Similarity=0.335 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHH
Q 036401 990 VKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAA 1069 (1154)
Q Consensus 990 ~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~ 1069 (1154)
+..-+..........+...+..+|..|+...++ ...+.++ + +.| .+....+.....++..||||||+.++
T Consensus 492 l~~~~~~l~~~~~~~le~~~~~~f~~l~~k~~~--~~~v~id---~-~~~----~~~l~~~~g~~~~~~~lS~Ge~~~~~ 561 (650)
T TIGR03185 492 LKEFREKLLERKLQQLEEEITKSFKKLMRKHNL--ISRLKID---P-ETF----AVSLYDNNGKHIDKERLSAGERQILA 561 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc--eeEEEEc---C-Cce----eEEEEcCCCCCcCCCCCCHHHHHHHH
Confidence 334444455556777888899999999644322 1222322 1 122 22223323345678899999999999
Q ss_pred HHHHHhhcccC--CCCeEEeeccccccchhhHHHHHH-HHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHH
Q 036401 1070 LALLFSIHSYK--PSPFFILDEVDAALDNLNVAKVAG-FIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYD 1139 (1154)
Q Consensus 1070 la~~~a~~~~~--p~~~~~lDE~d~~lD~~~~~~~~~-~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~ 1139 (1154)
|||++|++.+. +.||+ ||+|++.||+.++..++. ++..+ ..|+||+||+.++-.
T Consensus 562 la~~~al~~~~~~~~p~i-iD~p~~~lD~~~r~~l~~~~~~~~---------------~~QvIils~d~e~~~ 618 (650)
T TIGR03185 562 IALLWGLAKVSGRRLPVI-IDTPLGRLDSSHRENLVVNYFPKA---------------SHQVLLLSTDEEVDE 618 (650)
T ss_pred HHHHHHHHHhcCCCCCEE-EcCCccccChHHHHHHHHHHhhcc---------------CCeEEEEechHhhCH
Confidence 99999998764 47985 599999999999999885 66654 489999999966543
No 48
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.71 E-value=8.1e-14 Score=155.78 Aligned_cols=199 Identities=19% Similarity=0.214 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 935 FKQKMDALISEIEKTAPN-LKALDQYEALLEKERTVTE---EFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSID 1010 (1154)
Q Consensus 935 ~~~~l~~l~~~i~~l~~n-~~a~e~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~ 1010 (1154)
++.++..+..-.+++|+. ..+++-++.+.+++..+.. ..+.+......+...+.+.-..-...-..+...+...+.
T Consensus 302 ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~ 381 (557)
T COG0497 302 VEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVT 381 (557)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999984 4567777788888877654 566777777777777777666666666667777777777
Q ss_pred HHHHHhhcCCCCCCCceEEEeccCCCC-CCCcccc---eeec-CCCCcccc-cccCchhhHHHHHHHHHHhhcccCCCCe
Q 036401 1011 RIYKQLTRSNTHPLGGTAYLNLENEDD-PFLHGIK---YTAM-PPTKRFRD-MEQLSGGEKTVAALALLFSIHSYKPSPF 1084 (1154)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~-~~~~~~~~-~~~lSgGek~~~~la~~~a~~~~~p~~~ 1084 (1154)
...+.|. +. .+.+.+.+...+. +-..|++ |.+. -||...++ .+..||||-||++||+-.++....+.|.
T Consensus 382 ~eL~~L~----Me-~a~F~ve~~~~~~~~t~~G~d~VeF~istNpG~~~~PL~KvASGGELSRimLAlk~i~~~~~~~pt 456 (557)
T COG0497 382 AELKALA----ME-KARFTVELKPLEESPTADGADKVEFLISTNPGEPLKPLAKVASGGELSRIMLALKVILSRKDDTPT 456 (557)
T ss_pred HHHHhcC----CC-CceEEEEeccCCCCCCcCCcceEEEEEeCCCCCCCccHHhhcchhHHHHHHHHHHHHHhccCCCCe
Confidence 7777773 55 6677766654322 2444544 3333 24444555 5689999999999999999999888899
Q ss_pred EEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEeecC
Q 036401 1085 FILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVYRDS 1151 (1154)
Q Consensus 1085 ~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~~~~ 1151 (1154)
+||||+|+|+-......|.+.|+.+ +.++|+|+|||.|.+..+||..|-|.+..
T Consensus 457 lIFDEVD~GIsG~~A~aVg~~L~~L-------------s~~~QVl~VTHlPQVAa~ad~H~~V~K~~ 510 (557)
T COG0497 457 LIFDEVDTGISGRVAQAVGKKLRRL-------------SEHHQVLCVTHLPQVAAMADTHFLVEKES 510 (557)
T ss_pred EEEecccCCCChHHHHHHHHHHHHH-------------hcCceEEEEecHHHHHhhhcceEEEEEec
Confidence 9999999999999999999999999 48999999999999999999999998876
No 49
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.70 E-value=1e-09 Score=129.26 Aligned_cols=99 Identities=16% Similarity=0.292 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 397 EKEVLDREQHADLEVLKNLEANLQQLSNREHELDAQE-DQMRKRQKNILDASGGHKDELTKLKKELRSMQDKHRDSRQKY 475 (1154)
Q Consensus 397 ~l~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~-~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~~~ 475 (1154)
+..++..++....+.+..++.....++..+..+..+. ..+..++.+.+..+..+..+.+.++..+..+..++..+..++
T Consensus 352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444 344444555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 036401 476 ENLKSKIGEIENQLRELKAD 495 (1154)
Q Consensus 476 ~~l~~~l~~l~~~l~~l~~~ 495 (1154)
...+.+...+...+..++..
T Consensus 432 ~~~~ee~~~i~~~i~~l~k~ 451 (1074)
T KOG0250|consen 432 KEEEEEKEHIEGEILQLRKK 451 (1074)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 55555555454454444433
No 50
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=1.5e-17 Score=159.54 Aligned_cols=87 Identities=23% Similarity=0.353 Sum_probs=79.4
Q ss_pred CCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeE
Q 036401 1049 PPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQS 1128 (1154)
Q Consensus 1049 ~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~ 1128 (1154)
...+...+|.+|||||+||+|||++||+. |++++|||||++|||.-+..+.+.++++ +..+.++
T Consensus 126 L~~ka~~yP~qLSGGQqQRVAIARALaM~----P~vmLFDEPTSALDPElv~EVL~vm~~L------------A~eGmTM 189 (240)
T COG1126 126 LADKADAYPAQLSGGQQQRVAIARALAMD----PKVMLFDEPTSALDPELVGEVLDVMKDL------------AEEGMTM 189 (240)
T ss_pred chhhhhhCccccCcHHHHHHHHHHHHcCC----CCEEeecCCcccCCHHHHHHHHHHHHHH------------HHcCCeE
Confidence 34566788999999999999999999999 9999999999999999999999999999 3467889
Q ss_pred EEEEechhHHH-hccceEEEeecCCC
Q 036401 1129 IVISLKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1129 i~it~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
|+|||...++. .||++ |.|++|+
T Consensus 190 ivVTHEM~FAr~Vadrv--iFmd~G~ 213 (240)
T COG1126 190 IIVTHEMGFAREVADRV--IFMDQGK 213 (240)
T ss_pred EEEechhHHHHHhhheE--EEeeCCE
Confidence 99999999996 89999 7888884
No 51
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.69 E-value=7.3e-17 Score=160.46 Aligned_cols=78 Identities=42% Similarity=0.710 Sum_probs=61.6
Q ss_pred eeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccc-ccccc---chhhhcccchhhhcccce
Q 036401 10 IHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQL-RGGQL---KDLIYAYDDKEKEQKGRR 85 (1154)
Q Consensus 10 i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~-r~~~~---~~~I~~g~~~~~~~~~~~ 85 (1154)
|++|++.|||||.+.+++.++.++|+|+||||||||||||||+|++|+++... |...+ .++|.. +...
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 72 (178)
T cd03239 1 IKQITLKNFKSYRDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKA--------GINS 72 (178)
T ss_pred CcEEEEECccCCCCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCC--------CCce
Confidence 57899999999999887644444999999999999999999999999988753 44333 333443 3458
Q ss_pred EEEEEEEEeC
Q 036401 86 AFVRLVYQLG 95 (1154)
Q Consensus 86 a~v~~~~~~~ 95 (1154)
|+|+++|.+.
T Consensus 73 ~~v~~~f~~~ 82 (178)
T cd03239 73 ASVEITFDKS 82 (178)
T ss_pred EEEEEEEECc
Confidence 9999999654
No 52
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.69 E-value=9.1e-17 Score=164.97 Aligned_cols=109 Identities=29% Similarity=0.386 Sum_probs=91.9
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-ccccccchhhhcccchhhhcccceE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLKDLIYAYDDKEKEQKGRRA 86 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~~~~~~I~~g~~~~~~~~~~~a 86 (1154)
|.|.+|.|+||++|.+ ..+.|.+++|+|+|||||||||||+||+++||++... .|+..+.++|+.|+. .+
T Consensus 1 ~~i~~i~i~nfr~~~~-~~i~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~--------~~ 71 (213)
T cd03277 1 GSIVRIKLENFVTYDE-TEFRPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCD--------EG 71 (213)
T ss_pred CeeEEEEEeCCCCcce-eEEecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCC--------cE
Confidence 6899999999999964 4577777899999999999999999999999987754 688888999998853 68
Q ss_pred EEEEEEEeCCCceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHH
Q 036401 87 FVRLVYQLGNESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELT 161 (1154)
Q Consensus 87 ~v~~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~ 161 (1154)
.|.+.|.+.++. |.++++.+++.||.+..++.|+|.+++
T Consensus 72 ~v~~~~~~~~~~------------------------------------~~~~n~~~~~~q~~~~~~~~~~~~e~l 110 (213)
T cd03277 72 TIEIELYGNPGN------------------------------------IQVDNLCQFLPQDRVGEFAKLSPIELL 110 (213)
T ss_pred EEEEEEEeCCCc------------------------------------cccCCceEEEchHHHHHHHhCChHhHh
Confidence 898888665331 555567778899999999999999876
No 53
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=1.4e-15 Score=169.05 Aligned_cols=140 Identities=21% Similarity=0.333 Sum_probs=105.7
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
|+|.+|.|.||++|.+.. +.|.+++|+|+||||||||||++||++++++++ .|+....++|+.|++ .+.
T Consensus 1 M~l~~L~i~nFR~~~~~~-l~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s--~R~~~~~~li~~g~~--------~~~ 69 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVD-LELSPGVNVIVGPNGQGKTNLLEAIYYLALGRS--HRTSRDKPLIRFGAE--------AFV 69 (365)
T ss_pred CEEEEEEEeCCcceeeeE-EEECCCeEEEECCCCCCHHHHHHHHHHHcccCC--ccccchhhHHhCCCC--------eEE
Confidence 689999999999999764 566778999999999999999999999887765 677788999998853 788
Q ss_pred EEEEEEeCCCceE--EEEEEEecCCCeEEEECCccc-cHHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHHHHH
Q 036401 88 VRLVYQLGNESEL--QFTRTITSSGGSEYRIDGRVV-NWDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALL 164 (1154)
Q Consensus 88 v~~~~~~~~~~~~--~i~R~i~~~g~s~y~in~~~~-~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~ 164 (1154)
|...|.++++ .. .+...+.+.| ...++||..+ +.+++...| ..++||.+-..++..+|..|+.+|
T Consensus 70 v~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l----------~~v~~~p~~~~L~~g~p~~RR~fL 137 (365)
T TIGR00611 70 IEGRVSKGDR-EVTIPLEGLLKKKG-KKAKVNIDGQDKLSDLAGLL----------PMQLFAPEDLTLVKGSPKYRRRFL 137 (365)
T ss_pred EEEEEEeCCc-eEEEeEEEEEccCC-CeEEECCCCCcCHHHHHhhc----------cEEEecCCCHHHhcCChHHHHHHH
Confidence 9999976533 33 3333333333 3466776655 444554443 146788888888999999999999
Q ss_pred HH-hhcc
Q 036401 165 EQ-ISGS 170 (1154)
Q Consensus 165 e~-~~g~ 170 (1154)
+. ++..
T Consensus 138 D~~~~~~ 144 (365)
T TIGR00611 138 DWGLFQV 144 (365)
T ss_pred HHHHHhc
Confidence 94 4443
No 54
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.67 E-value=6.3e-08 Score=124.05 Aligned_cols=99 Identities=21% Similarity=0.269 Sum_probs=47.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 036401 386 EAGMKTAKLRDEKEVLDREQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELRSMQ 465 (1154)
Q Consensus 386 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 465 (1154)
.+.+.+...+..+..+......+.+.+.....++..+..+++.....+..+...+.++...+.++..+++..+.....+.
T Consensus 1045 kle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~e 1124 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAE 1124 (1930)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444455555555555555555555555555555555555555555555554444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 036401 466 DKHRDSRQKYENLKSKIGE 484 (1154)
Q Consensus 466 ~~~~~l~~~~~~l~~~l~~ 484 (1154)
.....+...+..+..++.+
T Consensus 1125 k~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1125 RQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 55
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.62 E-value=1.3e-14 Score=154.73 Aligned_cols=141 Identities=24% Similarity=0.326 Sum_probs=112.8
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceEE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
|+|.+|.+.||++|.+.. +.|.+++|+++|+|||||||||+||.+.--+++ .|.....++|..|++ .+.
T Consensus 1 M~l~~L~L~nFRNy~~~~-l~~~p~~nvl~G~NgqGKTNlLEAI~~l~~grS--~Rt~~~~~lir~~~~--------~~~ 69 (363)
T COG1195 1 MYLLSLLLRNFRNYAELD-LDLSPGVNVLVGENGQGKTNLLEAIYLLALGRS--HRTSRDKELIRTGAD--------EAE 69 (363)
T ss_pred CceeeeehhhcCCcccce-eccCCCcEEEECCCCCchHHHHHHHHHHccccC--ccccchhHHHhcCCc--------cEE
Confidence 689999999999999875 666778999999999999999999999887766 888889999998864 788
Q ss_pred EEEEEEeCCCceEEEEEEEecCCCeEEEECCcccc-HHHHHHHHHhcCCccccCeeEEecchhhhhhcCCchHHHHHHHH
Q 036401 88 VRLVYQLGNESELQFTRTITSSGGSEYRIDGRVVN-WDEYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQ 166 (1154)
Q Consensus 88 v~~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~~-~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~e~ 166 (1154)
|...++.. +...++.-.+.+.|....+|||.+++ ..|+...+ + .+.|--+-..++..+|+.||.||+.
T Consensus 70 i~~~v~~~-~~~~~~~~~~~~~g~~~vring~~~~~~~el~g~l---~-------~vlf~Pedl~Lv~G~P~~RRrFLD~ 138 (363)
T COG1195 70 ISARVQRK-GREGTLGLQISKKGRRRVRINGTKARKLAELAGHL---N-------VVLFTPEDLGLVKGSPSDRRRFLDW 138 (363)
T ss_pred EEEEEeec-cceeeeEEEeccCcceEEEECCcccccHHHHhhhC---c-------eEEecccccccccCCHHHHHHHHHH
Confidence 88888766 45666666677778888999998876 55666554 2 2334444455678999999999998
Q ss_pred hhcc
Q 036401 167 ISGS 170 (1154)
Q Consensus 167 ~~g~ 170 (1154)
..+-
T Consensus 139 ~l~~ 142 (363)
T COG1195 139 LLFQ 142 (363)
T ss_pred HHhc
Confidence 7654
No 56
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.62 E-value=2.2e-07 Score=119.19 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=9.8
Q ss_pred cchhhhhhcCCchHHHHHH
Q 036401 146 QGDVESIASKNPKELTALL 164 (1154)
Q Consensus 146 Qg~v~~i~~~~p~~~~~~~ 164 (1154)
.|=+..+-.+....+..+|
T Consensus 758 aGvla~LEe~Rd~~ls~ii 776 (1930)
T KOG0161|consen 758 AGVLAHLEEMRDEKLSQII 776 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444
No 57
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.60 E-value=5.6e-16 Score=152.49 Aligned_cols=93 Identities=23% Similarity=0.324 Sum_probs=81.9
Q ss_pred ceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCC
Q 036401 1044 KYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEG 1123 (1154)
Q Consensus 1044 ~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 1123 (1154)
+..+.|+....+.|.+|||||+||+|||++|+.. |+++|||||+++||..+-..++++|.++. ..
T Consensus 126 ~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~----PklLIlDEptSaLD~siQa~IlnlL~~l~-----------~~ 190 (252)
T COG1124 126 DQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE----PKLLILDEPTSALDVSVQAQILNLLLELK-----------KE 190 (252)
T ss_pred HHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC----CCEEEecCchhhhcHHHHHHHHHHHHHHH-----------Hh
Confidence 3455677777899999999999999999999999 99999999999999999999999999994 23
Q ss_pred CCeeEEEEEechhHHH-hccceEEEeecCCC
Q 036401 1124 NGFQSIVISLKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1124 ~~~q~i~it~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
.+..||||||+..++. +||++ +.|++|+
T Consensus 191 ~~lt~l~IsHdl~~v~~~cdRi--~Vm~~G~ 219 (252)
T COG1124 191 RGLTYLFISHDLALVEHMCDRI--AVMDNGQ 219 (252)
T ss_pred cCceEEEEeCcHHHHHHHhhhe--eeeeCCe
Confidence 5678999999988887 89999 5688775
No 58
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.60 E-value=1.3e-15 Score=152.28 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=74.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
++|.+|||||+||||||++|+.. |++++.||||++||..+...++++|.++.+ ..+..+|||||+
T Consensus 138 ~~p~eLSGGqqQRVAIARAL~~~----P~iilADEPTgnLD~~t~~~V~~ll~~~~~-----------~~g~tii~VTHd 202 (226)
T COG1136 138 KKPSELSGGQQQRVAIARALINN----PKIILADEPTGNLDSKTAKEVLELLRELNK-----------ERGKTIIMVTHD 202 (226)
T ss_pred CCchhcCHHHHHHHHHHHHHhcC----CCeEEeeCccccCChHHHHHHHHHHHHHHH-----------hcCCEEEEEcCC
Confidence 56889999999999999999998 999999999999999999999999999942 246789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
+.++..||++ +++.+|+
T Consensus 203 ~~lA~~~dr~--i~l~dG~ 219 (226)
T COG1136 203 PELAKYADRV--IELKDGK 219 (226)
T ss_pred HHHHHhCCEE--EEEeCCe
Confidence 9999999999 5667664
No 59
>PRK02224 chromosome segregation protein; Provisional
Probab=99.60 E-value=2.2e-07 Score=119.10 Aligned_cols=171 Identities=22% Similarity=0.318 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEec
Q 036401 956 LDQYEALLEKERTVTEEFEAARK---EEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNL 1032 (1154)
Q Consensus 956 ~e~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1032 (1154)
++.++.+.+++..+...++.+.. ....+...+..+....... +...|...+..+|..+ |+-++...+.+
T Consensus 690 ~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~i~~ 761 (880)
T PRK02224 690 LEELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQR---NVETLERMLNETFDLV-----YQNDAYSHIEL 761 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-----cCCCCeeEEEe
Confidence 33445555555555555555543 3344555555554444444 4455666788888877 43123334443
Q ss_pred cCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHHhhccc--------CCCCeEEeeccccccchhhHHHHHH
Q 036401 1033 ENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSY--------KPSPFFILDEVDAALDNLNVAKVAG 1104 (1154)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~--------~p~~~~~lDE~d~~lD~~~~~~~~~ 1104 (1154)
.+ .+ ++.. ..|+|. ..++..||||++..++|||.+|+..+ .|+|++||||||++||+.++..+..
T Consensus 762 ~~---~~--~i~~-~~~~g~-~~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~ 834 (880)
T PRK02224 762 DG---EY--ELTV-YQKDGE-PLEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVD 834 (880)
T ss_pred cC---Cc--ceee-eCCCCC-ccChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHH
Confidence 21 12 2322 234443 45788999999998888888877642 3457899999999999999999999
Q ss_pred HHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEeecCC
Q 036401 1105 FIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1105 ~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~~~~~ 1152 (1154)
+|..+. ....+|||||||++.++..||++|+|+++++
T Consensus 835 ~l~~~~-----------~~~~~qviiish~~~~~~~ad~~~~~~~~~~ 871 (880)
T PRK02224 835 LVESMR-----------RLGVEQIVVVSHDDELVGAADDLVRVEKDPT 871 (880)
T ss_pred HHHHHH-----------hcCCCeEEEEECChHHHHhcCeeEEeecCCC
Confidence 999982 1124699999999999999999999999884
No 60
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.60 E-value=3.5e-07 Score=117.62 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=44.6
Q ss_pred cCCcceecccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHHHHHHHhCCeEec
Q 036401 516 FQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIKAVLFAVGNTLVC 574 (1154)
Q Consensus 516 ~~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~ai~~~lg~~lvv 574 (1154)
++||. |++++....+.|..++.+++|+.++.+||++...|..+|..+.-..++.+++
T Consensus 682 ~~Gvl--vsel~~~v~~~~~~~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~~p~d~~li 738 (1486)
T PRK04863 682 FGGVL--LSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSDAAEQLAGLEDCPEDLYLI 738 (1486)
T ss_pred cCCee--hhHhhhccCcchHHHHHHHHHhhhCeEEeCCHHHHHHHHHhccCCccceeee
Confidence 45665 7888883357899999999999999999999999988766655555566554
No 61
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.60 E-value=1.3e-16 Score=156.32 Aligned_cols=134 Identities=16% Similarity=0.207 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCceEE-EeccCCCCCCCcccceeecCCC-CcccccccCchhhHHHHHHHHHHhhccc
Q 036401 1002 FNHISSSIDRIYKQLTRSNTHPLGGTAY-LNLENEDDPFLHGIKYTAMPPT-KRFRDMEQLSGGEKTVAALALLFSIHSY 1079 (1154)
Q Consensus 1002 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lSgGek~~~~la~~~a~~~~ 1079 (1154)
..+|.+.+. +|+++|...|..+..... .+-.........-+...+.+|. ...++|++|||||+||+.+|++||..
T Consensus 77 IGYviQqig-LFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad-- 153 (309)
T COG1125 77 IGYVIQQIG-LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD-- 153 (309)
T ss_pred hhhhhhhcc-cCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC--
Confidence 345555554 788888888765211110 0000001112222445556553 57799999999999999999999999
Q ss_pred CCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec-hhHHHhccceEEEeecCCC
Q 036401 1080 KPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK-DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1080 ~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~-~~~~~~~d~~~GV~~~~~~ 1153 (1154)
||+++||||+++|||.+|..+-+.++.+.+ .-+.+||||||+ ++.+..||++ +-|+.|+
T Consensus 154 --P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~-----------~l~kTivfVTHDidEA~kLadri--~vm~~G~ 213 (309)
T COG1125 154 --PPILLMDEPFGALDPITRKQLQEEIKELQK-----------ELGKTIVFVTHDIDEALKLADRI--AVMDAGE 213 (309)
T ss_pred --CCeEeecCCccccChhhHHHHHHHHHHHHH-----------HhCCEEEEEecCHHHHHhhhceE--EEecCCe
Confidence 999999999999999999999999999852 246789999999 7888999999 5677775
No 62
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.58 E-value=2.9e-16 Score=153.38 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=91.0
Q ss_pred HHHHHHHhhcCCCCCC--CceEEEeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEE
Q 036401 1009 IDRIYKQLTRSNTHPL--GGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFI 1086 (1154)
Q Consensus 1009 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~ 1086 (1154)
+..+|..||..+|..+ .-...++-....+.....++..+.++......|+.||||++.|+|||+++|+. |++++
T Consensus 93 ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald----Pell~ 168 (263)
T COG1127 93 QGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD----PELLF 168 (263)
T ss_pred ccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC----CCEEE
Confidence 3457777877777532 11111111000111111234444555546789999999999999999999999 99999
Q ss_pred eeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec-hhHHHhccceEEEe
Q 036401 1087 LDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK-DSFYDKAEALVGVY 1148 (1154)
Q Consensus 1087 lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~-~~~~~~~d~~~GV~ 1148 (1154)
+||||+||||.....+-++|+.+.+ .-+.++|+|||+ ++++..||+++-++
T Consensus 169 ~DEPtsGLDPI~a~~~~~LI~~L~~-----------~lg~T~i~VTHDl~s~~~i~Drv~~L~ 220 (263)
T COG1127 169 LDEPTSGLDPISAGVIDELIRELND-----------ALGLTVIMVTHDLDSLLTIADRVAVLA 220 (263)
T ss_pred ecCCCCCCCcchHHHHHHHHHHHHH-----------hhCCEEEEEECChHHHHhhhceEEEEe
Confidence 9999999999999999999999953 246789999999 67778999998654
No 63
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=9.4e-07 Score=116.48 Aligned_cols=191 Identities=18% Similarity=0.267 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 935 FKQKMDALISEIEKTAPNLKALDQYEALLEKERTVTEEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYK 1014 (1154)
Q Consensus 935 ~~~~l~~l~~~i~~l~~n~~a~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~ 1014 (1154)
++..|..++.+++. .+|..+.++|....-++.....+..+|......++......-..-...||..+..+|.
T Consensus 1080 le~qi~~l~~eL~e--------~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~w~ 1151 (1311)
T TIGR00606 1080 YEKEIKHFKKELRE--------PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWR 1151 (1311)
T ss_pred HHHHHHHHHHHHcc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554432 3788888888888888888888888888877777776666656667889999999998
Q ss_pred HhhcCCCCCCCceE--EEeccCCCCC-----C--Ccccc-eeecCCCC-cccccccCchhhHH------HHHHHHHHhhc
Q 036401 1015 QLTRSNTHPLGGTA--YLNLENEDDP-----F--LHGIK-YTAMPPTK-RFRDMEQLSGGEKT------VAALALLFSIH 1077 (1154)
Q Consensus 1015 ~~~~~~~~~~~~~~--~~~~~~~~~~-----~--~~~~~-~~~~~~~~-~~~~~~~lSgGek~------~~~la~~~a~~ 1077 (1154)
.. |. |+. .+.+ .++.+ . ..... +.++|.|. ....+..||||+++ +++||.+|+..
T Consensus 1152 ~~-----~~--~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~ 1223 (1311)
T TIGR00606 1152 ST-----YR--GQDIEYIEI-RSDADENVSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLN 1223 (1311)
T ss_pred HH-----cC--ccHHHHhhc-CCCCChHHHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHHHHHhcC
Confidence 88 43 221 1222 11110 0 01111 23455553 23455789999999 78888888766
Q ss_pred ccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHH------hccceEEEeecC
Q 036401 1078 SYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYD------KAEALVGVYRDS 1151 (1154)
Q Consensus 1078 ~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~------~~d~~~GV~~~~ 1151 (1154)
|||++|||||++||+.++..+...|..+..... ...+.++|||||+..++. .|+..|.|+++.
T Consensus 1224 ----~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~-------~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~ 1292 (1311)
T TIGR00606 1224 ----CGIIALDEPTTNLDRENIESLAHALVEIIKSRS-------QQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNE 1292 (1311)
T ss_pred ----CCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhh-------hccCCeEEEEecCHHHHHHHhhccccceeeeeeecc
Confidence 999999999999999999999998887731100 124678999999987765 368999999876
Q ss_pred C
Q 036401 1152 D 1152 (1154)
Q Consensus 1152 ~ 1152 (1154)
+
T Consensus 1293 ~ 1293 (1311)
T TIGR00606 1293 D 1293 (1311)
T ss_pred c
Confidence 4
No 64
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.54 E-value=1.7e-15 Score=140.31 Aligned_cols=126 Identities=21% Similarity=0.210 Sum_probs=93.4
Q ss_pred HHHHHhhcCCCCCCCceEEEeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeecc
Q 036401 1011 RIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEV 1090 (1154)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~ 1090 (1154)
.+|..||+..|.++|-+..+.+...+..-...+--.+...+...+-|.+||||||||+|||+.|.-. -|+++||||
T Consensus 81 NLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~----~PilLLDEP 156 (231)
T COG3840 81 NLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVRE----QPILLLDEP 156 (231)
T ss_pred ccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhcc----CCeEEecCc
Confidence 4788999998888765555555332211111111122334556688999999999999999999876 899999999
Q ss_pred ccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhH-HHhccceEEEeecCCC
Q 036401 1091 DAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1091 d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
+++|||.-|..+..++.++. ...+.++++|||+++- ...+|+++- -++|+
T Consensus 157 FsALdP~LR~eMl~Lv~~l~-----------~E~~~TllmVTH~~~Da~~ia~~~~f--l~~Gr 207 (231)
T COG3840 157 FSALDPALRAEMLALVSQLC-----------DERKMTLLMVTHHPEDAARIADRVVF--LDNGR 207 (231)
T ss_pred hhhcCHHHHHHHHHHHHHHH-----------HhhCCEEEEEeCCHHHHHHhhhceEE--EeCCE
Confidence 99999999999999999993 2357889999999654 458999854 45554
No 65
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.8e-14 Score=143.71 Aligned_cols=87 Identities=21% Similarity=0.183 Sum_probs=77.1
Q ss_pred CCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEE
Q 036401 1051 TKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIV 1130 (1154)
Q Consensus 1051 ~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~ 1130 (1154)
+....+|++||||||||||||++|+.. |++++||||+++||+..+..+.+.|.++- ...+.++++
T Consensus 122 ~~~~~~P~qLSGGMrQRVaiARAL~~~----P~lLLlDEPFgALDalTR~~lq~~l~~lw-----------~~~~~Tvll 186 (248)
T COG1116 122 GFEDKYPHQLSGGMRQRVAIARALATR----PKLLLLDEPFGALDALTREELQDELLRLW-----------EETRKTVLL 186 (248)
T ss_pred chhhcCccccChHHHHHHHHHHHHhcC----CCEEEEcCCcchhhHHHHHHHHHHHHHHH-----------HhhCCEEEE
Confidence 445678999999999999999999999 99999999999999999999999999884 235678999
Q ss_pred EEec-hhHHHhccceEEEeecCC
Q 036401 1131 ISLK-DSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1131 it~~-~~~~~~~d~~~GV~~~~~ 1152 (1154)
|||+ ++.+..||++|-.+-.||
T Consensus 187 VTHdi~EAv~LsdRivvl~~~P~ 209 (248)
T COG1116 187 VTHDVDEAVYLADRVVVLSNRPG 209 (248)
T ss_pred EeCCHHHHHhhhCEEEEecCCCc
Confidence 9999 788889999987766664
No 66
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.51 E-value=4e-14 Score=143.89 Aligned_cols=88 Identities=43% Similarity=0.650 Sum_probs=79.4
Q ss_pred CCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEE
Q 036401 1051 TKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIV 1130 (1154)
Q Consensus 1051 ~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~ 1130 (1154)
+.....+..||||||++++||+++++..+.||++++||||+++||+.++..+.++|.++ . .+.++|+
T Consensus 105 ~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tiIi 171 (197)
T cd03278 105 GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEF------------S-KETQFIV 171 (197)
T ss_pred CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHh------------c-cCCEEEE
Confidence 34457789999999999999999987666788999999999999999999999999998 3 3578999
Q ss_pred EEechhHHHhccceEEEeecC
Q 036401 1131 ISLKDSFYDKAEALVGVYRDS 1151 (1154)
Q Consensus 1131 it~~~~~~~~~d~~~GV~~~~ 1151 (1154)
|||+...+..||++++|+|..
T Consensus 172 itH~~~~~~~~d~v~~~~~~~ 192 (197)
T cd03278 172 ITHRKGTMEAADRLYGVTMQE 192 (197)
T ss_pred EECCHHHHhhcceEEEEEecc
Confidence 999998899999999999986
No 67
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.4e-14 Score=148.76 Aligned_cols=84 Identities=23% Similarity=0.291 Sum_probs=73.1
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..+++..||||||+|+|||-++|+. |.++|||||||+||+.++..+++++.++.. ..+..+|+||
T Consensus 132 ~~r~p~~LSGGqkqRvaIA~vLa~~----P~iliLDEPta~LD~~~~~~l~~~l~~L~~-----------~~~~tii~~t 196 (235)
T COG1122 132 LDRPPFNLSGGQKQRVAIAGVLAMG----PEILLLDEPTAGLDPKGRRELLELLKKLKE-----------EGGKTIIIVT 196 (235)
T ss_pred ccCCccccCCcceeeHHhhHHHHcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-----------cCCCeEEEEe
Confidence 4688999999999999999999999 999999999999999999999999999942 1256799999
Q ss_pred echhHH-HhccceEEEeecCCC
Q 036401 1133 LKDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1133 ~~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
|+.+.+ ..||++ +.|++|+
T Consensus 197 Hd~~~~~~~ad~v--~vl~~G~ 216 (235)
T COG1122 197 HDLELVLEYADRV--VVLDDGK 216 (235)
T ss_pred CcHHHHHhhCCEE--EEEECCE
Confidence 996555 579999 5566665
No 68
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.7e-14 Score=146.50 Aligned_cols=88 Identities=22% Similarity=0.274 Sum_probs=79.6
Q ss_pred CCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeE
Q 036401 1049 PPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQS 1128 (1154)
Q Consensus 1049 ~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~ 1128 (1154)
.+++..++|.+|||||||||+||++||.. |.+++.||||++|||.....+.++|+++.+ .-+.++
T Consensus 131 L~dk~~~yP~qLSGGQKQRVaIARALa~~----P~iLL~DEaTSALDP~TT~sIL~LL~~In~-----------~lglTI 195 (339)
T COG1135 131 LSDKADRYPAQLSGGQKQRVAIARALANN----PKILLCDEATSALDPETTQSILELLKDINR-----------ELGLTI 195 (339)
T ss_pred ChhhhccCchhcCcchhhHHHHHHHHhcC----CCEEEecCccccCChHHHHHHHHHHHHHHH-----------HcCCEE
Confidence 34778899999999999999999999999 999999999999999999999999999953 247789
Q ss_pred EEEEechhHHH-hccceEEEeecCCC
Q 036401 1129 IVISLKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1129 i~it~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
++|||.++++. .||++ ..|+.|+
T Consensus 196 vlITHEm~Vvk~ic~rV--avm~~G~ 219 (339)
T COG1135 196 VLITHEMEVVKRICDRV--AVLDQGR 219 (339)
T ss_pred EEEechHHHHHHHhhhh--eEeeCCE
Confidence 99999998886 89999 6688886
No 69
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.49 E-value=4.8e-14 Score=150.66 Aligned_cols=87 Identities=34% Similarity=0.600 Sum_probs=79.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
...+..|||||+++++||.+|+...+.||++++|||||++||+..+..+.++|..+ . .+.++|+|||
T Consensus 161 ~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~------------~-~g~~ii~iSH 227 (251)
T cd03273 161 KESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH------------F-KGSQFIVVSL 227 (251)
T ss_pred cccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH------------c-CCCEEEEEEC
Confidence 45688999999999999999997666789999999999999999999999999998 3 4789999999
Q ss_pred chhHHHhccceEEEeecCCC
Q 036401 1134 KDSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~~~~d~~~GV~~~~~~ 1153 (1154)
+.+++..||++||||+.+|.
T Consensus 228 ~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 228 KEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred CHHHHHhCCEEEEEEeeCCE
Confidence 99999999999999998873
No 70
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.49 E-value=5.7e-14 Score=149.35 Aligned_cols=91 Identities=74% Similarity=1.179 Sum_probs=82.7
Q ss_pred CCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeE
Q 036401 1049 PPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQS 1128 (1154)
Q Consensus 1049 ~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~ 1128 (1154)
|++.....+..|||||+++++||++|+...+.||+++|||||+++||+..+..+.++|.++ ...+.++
T Consensus 145 p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~------------~~~g~~v 212 (247)
T cd03275 145 PPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQ------------AGPNFQF 212 (247)
T ss_pred CcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHh------------ccCCcEE
Confidence 4556667789999999999999999998778899999999999999999999999999999 3347889
Q ss_pred EEEEechhHHHhccceEEEeecC
Q 036401 1129 IVISLKDSFYDKAEALVGVYRDS 1151 (1154)
Q Consensus 1129 i~it~~~~~~~~~d~~~GV~~~~ 1151 (1154)
|+|||+..++..||++|+|+|+.
T Consensus 213 i~isH~~~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 213 IVISLKEEFFSKADALVGVYRDQ 235 (247)
T ss_pred EEEECCHHHHhhCCeEEEEEecC
Confidence 99999999999999999999986
No 71
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.8e-14 Score=145.86 Aligned_cols=124 Identities=18% Similarity=0.230 Sum_probs=93.5
Q ss_pred HHHHhhcCCCCCCCceEEEeccCCCCCCCccc---ceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEee
Q 036401 1012 IYKQLTRSNTHPLGGTAYLNLENEDDPFLHGI---KYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILD 1088 (1154)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lD 1088 (1154)
+|+.||...|..||-...-. ..+......-+ -..+...+-..++|.+|||||+||+|||+++|.. |++++||
T Consensus 88 LF~HmtVa~NIAFGl~~~~~-~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~e----P~vLLLD 162 (345)
T COG1118 88 LFPHMTVADNIAFGLKVRKE-RPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVE----PKVLLLD 162 (345)
T ss_pred hcccchHHhhhhhccccccc-CCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcC----CCeEeec
Confidence 78888888887655433300 00010000000 0123444556789999999999999999999999 9999999
Q ss_pred ccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec-hhHHHhccceEEEeecCCC
Q 036401 1089 EVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK-DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1089 E~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~-~~~~~~~d~~~GV~~~~~~ 1153 (1154)
||+.+||..-+..+...|+++..+ -+...++|||+ .+.++.||++ |-|.+|+
T Consensus 163 EPf~ALDa~vr~~lr~wLr~~~~~-----------~~~ttvfVTHD~eea~~ladrv--vvl~~G~ 215 (345)
T COG1118 163 EPFGALDAKVRKELRRWLRKLHDR-----------LGVTTVFVTHDQEEALELADRV--VVLNQGR 215 (345)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHh-----------hCceEEEEeCCHHHHHhhcceE--EEecCCe
Confidence 999999999999999999999632 36679999999 6788899999 7888886
No 72
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.48 E-value=7.2e-14 Score=128.00 Aligned_cols=87 Identities=22% Similarity=0.250 Sum_probs=78.3
Q ss_pred CCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEE
Q 036401 1051 TKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIV 1130 (1154)
Q Consensus 1051 ~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~ 1130 (1154)
.....+|.+|||||+|+||||++|+.. |.++|-||||.+||...-..+.++|-.+.+ ..+++.|+
T Consensus 138 ~Rl~HyP~qLSGGEQQRVAiARAfa~~----P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr-----------e~G~TlVl 202 (228)
T COG4181 138 KRLTHYPAQLSGGEQQRVALARAFAGR----PDVLFADEPTGNLDRATGDKIADLLFALNR-----------ERGTTLVL 202 (228)
T ss_pred cccccCccccCchHHHHHHHHHHhcCC----CCEEeccCCCCCcchhHHHHHHHHHHHHhh-----------hcCceEEE
Confidence 344578999999999999999999998 999999999999999999999999999952 35788999
Q ss_pred EEechhHHHhccceEEEeecCCCC
Q 036401 1131 ISLKDSFYDKAEALVGVYRDSDRR 1154 (1154)
Q Consensus 1131 it~~~~~~~~~d~~~GV~~~~~~~ 1154 (1154)
|||++.+...|++. |.|..|+.
T Consensus 203 VTHD~~LA~Rc~R~--~r~~~G~l 224 (228)
T COG4181 203 VTHDPQLAARCDRQ--LRLRSGRL 224 (228)
T ss_pred EeCCHHHHHhhhhe--eeeeccee
Confidence 99999999999999 77888763
No 73
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.47 E-value=1e-13 Score=142.61 Aligned_cols=117 Identities=43% Similarity=0.672 Sum_probs=84.8
Q ss_pred CceeEEEEecceeccCceeecCC-CCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhcccchhhhcccceE
Q 036401 8 GKIHRLELENFKSYKGLQIIGPF-SDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYAYDDKEKEQKGRRA 86 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~-~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~g~~~~~~~~~~~a 86 (1154)
|+|++|+|.|||+|.+..++.+. .+|++|+|||||||||+++||+|++|......|...+.++++.+.. .+....+
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~---~~~~~~~ 77 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAG---HPNLDSC 77 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCC---CCCCceE
Confidence 58999999999999998877433 3699999999999999999999999976545676677888876531 2233456
Q ss_pred EEEEEEEeCCCceEEEEEEEecCCCeEEEECCccccHHHHHHHHHhcCCccccCeeEEecchhhhhhcCC
Q 036401 87 FVRLVYQLGNESELQFTRTITSSGGSEYRIDGRVVNWDEYNAKLRSLGILVKARNFLVFQGDVESIASKN 156 (1154)
Q Consensus 87 ~v~~~~~~~~~~~~~i~R~i~~~g~s~y~in~~~~~~~~~~~~l~~~~i~~~~~~~~i~Qg~v~~i~~~~ 156 (1154)
++..+|....+ ...|...|+....+.+++.||++..+..+.
T Consensus 78 ~~~~~~~~~~~-----------------------------~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~ 118 (212)
T cd03274 78 SVEVHFQEIID-----------------------------KPLLKSKGIDLDHNRFLILQGEVEQIAQMP 118 (212)
T ss_pred EEEEEEEeCCC-----------------------------HHHHHHCCcCCCCCceEEcCCcEEEeeccc
Confidence 66666633211 014555677665556677888888887763
No 74
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.47 E-value=2.3e-14 Score=145.09 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCceEE-EeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCC
Q 036401 1005 ISSSIDRIYKQLTRSNTHPLGGTAY-LNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSP 1083 (1154)
Q Consensus 1005 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~ 1083 (1154)
|.++|. +|++.|..+|..+|-... +...+..+.....++ .+...+...++|++||||++|||.||++||.. ||
T Consensus 111 VFQ~Fa-LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~-~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~----~~ 184 (386)
T COG4175 111 VFQSFA-LLPHRTVLENVAFGLEVQGVPKAEREERALEALE-LVGLEGYADKYPNELSGGMQQRVGLARALAND----PD 184 (386)
T ss_pred hhhhhc-cccchhHhhhhhcceeecCCCHHHHHHHHHHHHH-HcCchhhhhcCcccccchHHHHHHHHHHHccC----CC
Confidence 333443 677787777765432211 111111111111122 22333445688999999999999999999999 99
Q ss_pred eEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec-hhHHHhccceEEEeecCCC
Q 036401 1084 FFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK-DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1084 ~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~-~~~~~~~d~~~GV~~~~~~ 1153 (1154)
+++||||+++|||.-|..+-+-|.+|. ..-+.++|||||+ ++.+...|++ .-|.+|+
T Consensus 185 IlLMDEaFSALDPLIR~~mQdeLl~Lq-----------~~l~KTIvFitHDLdEAlriG~rI--aimkdG~ 242 (386)
T COG4175 185 ILLMDEAFSALDPLIRTEMQDELLELQ-----------AKLKKTIVFITHDLDEALRIGDRI--AIMKDGE 242 (386)
T ss_pred EEEecCchhhcChHHHHHHHHHHHHHH-----------HHhCCeEEEEecCHHHHHhccceE--EEecCCe
Confidence 999999999999999999999999984 2247789999999 7888899998 5577775
No 75
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.46 E-value=1e-13 Score=106.98 Aligned_cols=49 Identities=49% Similarity=0.677 Sum_probs=41.8
Q ss_pred eeEEEEecceeccCceeecCC--CCeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 10 IHRLELENFKSYKGLQIIGPF--SDFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 10 i~~l~l~nFks~~~~~~i~~~--~~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
+.+|.|.||.+|.+ +.+.+. .++|+|+||||||||||||||+|+|.+..
T Consensus 1 L~rl~L~Nw~~f~~-~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 1 LTRLQLVNWGSFDG-ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEeccCccCC-eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 46899999999999 556332 24999999999999999999999998765
No 76
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.44 E-value=1e-13 Score=143.67 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=73.1
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
..++++||||++||+.||.++|.. |+++|.||||++||..+...+.++|+++.+ ..++.+|+|||
T Consensus 148 ~~YPhelSGGMrQRV~IAmala~~----P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-----------e~~~aiilITH 212 (316)
T COG0444 148 KSYPHELSGGMRQRVMIAMALALN----PKLLIADEPTTALDVTVQAQILDLLKELQR-----------EKGTALILITH 212 (316)
T ss_pred hhCCcccCCcHHHHHHHHHHHhCC----CCEEEeCCCcchhhHHHHHHHHHHHHHHHH-----------hcCCEEEEEeC
Confidence 467999999999999999999999 999999999999999999999999999942 25777999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+..++ +.||+++ .|..|+
T Consensus 213 Dl~vva~~aDri~--VMYaG~ 231 (316)
T COG0444 213 DLGVVAEIADRVA--VMYAGR 231 (316)
T ss_pred CHHHHHHhcceEE--EEECcE
Confidence 98766 5999995 355554
No 77
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.44 E-value=3.8e-13 Score=137.75 Aligned_cols=89 Identities=30% Similarity=0.471 Sum_probs=71.0
Q ss_pred eeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc--ccccccchhhhcccchhhhcccceEE
Q 036401 10 IHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ--LRGGQLKDLIYAYDDKEKEQKGRRAF 87 (1154)
Q Consensus 10 i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~--~r~~~~~~~I~~g~~~~~~~~~~~a~ 87 (1154)
|++|++.||+||.+.+.+.|.+++++|+|||||||||+++||+|++.+.... .+.....++|+.+ ...+.
T Consensus 1 ~~~l~l~nfr~~~~~~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~--------~~~~~ 72 (204)
T cd03240 1 IDKLSIRNIRSFHERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG--------EVRAQ 72 (204)
T ss_pred CcEEEEECcccccCceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCC--------CCcEE
Confidence 5789999999988887787777899999999999999999999999776542 1222244566654 34789
Q ss_pred EEEEEEeCCCceEEEEEEE
Q 036401 88 VRLVYQLGNESELQFTRTI 106 (1154)
Q Consensus 88 v~~~~~~~~~~~~~i~R~i 106 (1154)
|.++|++.++..+++.|.+
T Consensus 73 v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 73 VKLAFENANGKKYTITRSL 91 (204)
T ss_pred EEEEEEeCCCCEEEEEEEh
Confidence 9999988767889999876
No 78
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.43 E-value=7.8e-14 Score=133.37 Aligned_cols=78 Identities=15% Similarity=0.297 Sum_probs=68.3
Q ss_pred CCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEE
Q 036401 1050 PTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSI 1129 (1154)
Q Consensus 1050 ~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i 1129 (1154)
+++...+...|||||+||++||+++|+. |.+++||||+++|||.....+-++|.+| . .+.++|
T Consensus 140 KDrL~~sa~~LSGGQQQRLcIARalAv~----PeVlLmDEPtSALDPIsT~kIEeLi~eL------------k-~~yTIv 202 (253)
T COG1117 140 KDRLHKSALGLSGGQQQRLCIARALAVK----PEVLLMDEPTSALDPISTLKIEELITEL------------K-KKYTIV 202 (253)
T ss_pred HHHhhCCccCCChhHHHHHHHHHHHhcC----CcEEEecCcccccCchhHHHHHHHHHHH------------H-hccEEE
Confidence 3444466778999999999999999999 9999999999999999999999999999 3 788999
Q ss_pred EEEech-hHHHhccce
Q 036401 1130 VISLKD-SFYDKAEAL 1144 (1154)
Q Consensus 1130 ~it~~~-~~~~~~d~~ 1144 (1154)
+|||+. .....+|..
T Consensus 203 iVTHnmqQAaRvSD~t 218 (253)
T COG1117 203 IVTHNMQQAARVSDYT 218 (253)
T ss_pred EEeCCHHHHHHHhHhh
Confidence 999995 444577776
No 79
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.43 E-value=6.5e-13 Score=132.23 Aligned_cols=81 Identities=46% Similarity=0.754 Sum_probs=75.1
Q ss_pred CchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHH
Q 036401 1060 LSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYD 1139 (1154)
Q Consensus 1060 lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~ 1139 (1154)
|||||+++++||++++.+.+.+||++||||||++||+.+...+.++|.++ ...+.|+|+|||+..++.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~------------~~~g~tiIiiSH~~~~~~ 162 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEM------------AKHTSQFIVITLKKEMFE 162 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH------------HhCCCEEEEEECCHHHHh
Confidence 99999999999999998888889999999999999999999999999998 334589999999999999
Q ss_pred hccceEEEeecCC
Q 036401 1140 KAEALVGVYRDSD 1152 (1154)
Q Consensus 1140 ~~d~~~GV~~~~~ 1152 (1154)
.||+++.|++..+
T Consensus 163 ~adrvi~i~~~~~ 175 (178)
T cd03239 163 NADKLIGVLFVHG 175 (178)
T ss_pred hCCeEEEEEEeCC
Confidence 9999999999664
No 80
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.43 E-value=2.7e-13 Score=137.89 Aligned_cols=78 Identities=31% Similarity=0.430 Sum_probs=66.6
Q ss_pred eeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-ccccccchhhhcccchhhhcccceEEE
Q 036401 10 IHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLKDLIYAYDDKEKEQKGRRAFV 88 (1154)
Q Consensus 10 i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~~~~~~I~~g~~~~~~~~~~~a~v 88 (1154)
|.+|.|.||+||.+. .+.|.+++|+|+||||||||||++||++++|+.... .|+..+.++|+.|.. .+.|
T Consensus 1 i~~l~l~nfr~~~~~-~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~--------~~~i 71 (198)
T cd03276 1 IESITLKNFMCHRHL-QIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGES--------SAKI 71 (198)
T ss_pred CeEEEEeCccceeee-EEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCC--------eEEE
Confidence 678999999999865 466777899999999999999999999999987654 788889999987642 6889
Q ss_pred EEEEEeCC
Q 036401 89 RLVYQLGN 96 (1154)
Q Consensus 89 ~~~~~~~~ 96 (1154)
.++|++.+
T Consensus 72 ~~~~~~~~ 79 (198)
T cd03276 72 TVTLKNQG 79 (198)
T ss_pred EEEEEcCC
Confidence 99998763
No 81
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.43 E-value=4.2e-13 Score=137.98 Aligned_cols=90 Identities=46% Similarity=0.892 Sum_probs=81.0
Q ss_pred CCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEE
Q 036401 1050 PTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSI 1129 (1154)
Q Consensus 1050 ~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i 1129 (1154)
++.....+..||||++++++||+++++..+.||+++|||||+++||+..+..+.++|.++ . .+.++|
T Consensus 118 ~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~------------~-~~~~~i 184 (212)
T cd03274 118 PKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKER------------T-KNAQFI 184 (212)
T ss_pred ccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHH------------c-CCCEEE
Confidence 444556788999999999999999998777899999999999999999999999999999 3 467899
Q ss_pred EEEechhHHHhccceEEEeecCC
Q 036401 1130 VISLKDSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1130 ~it~~~~~~~~~d~~~GV~~~~~ 1152 (1154)
+|||++.++..||++++|++.+.
T Consensus 185 ivs~~~~~~~~~d~v~~~~~~~~ 207 (212)
T cd03274 185 VISLRNNMFELADRLVGIYKTNN 207 (212)
T ss_pred EEECcHHHHHhCCEEEEEEecCC
Confidence 99999999999999999998763
No 82
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.40 E-value=5.6e-13 Score=138.34 Aligned_cols=90 Identities=32% Similarity=0.442 Sum_probs=68.1
Q ss_pred CceeEEEEecceeccCceeecCCC----CeEEEEcCCCCCHHHHHHHHHHHhCcccc-cccccccchhhhcccchhhhcc
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFS----DFTAIIGPNGAGKSNLMDAISFVLGVRTG-QLRGGQLKDLIYAYDDKEKEQK 82 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~----~~~~IvG~NGsGKS~ildAi~~~lg~~~~-~~r~~~~~~~I~~g~~~~~~~~ 82 (1154)
|++++|+++||+||.+.+.+.|.. ++++|+||||||||||++||+|+|++... ..+.....+++..+
T Consensus 1 m~~~~i~l~nf~~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~-------- 72 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPG-------- 72 (213)
T ss_pred CEEEEEEEECCcCcCCceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCC--------
Confidence 689999999999998888775432 39999999999999999999999976553 23322334455433
Q ss_pred cceEEEEEEEEeCCCceEEEEEEE
Q 036401 83 GRRAFVRLVYQLGNESELQFTRTI 106 (1154)
Q Consensus 83 ~~~a~v~~~~~~~~~~~~~i~R~i 106 (1154)
...+.|.++|++. +..+.+.|.+
T Consensus 73 ~~~~~v~~~f~~~-~~~~~~~r~~ 95 (213)
T cd03279 73 EDTAEVSFTFQLG-GKKYRVERSR 95 (213)
T ss_pred CccEEEEEEEEEC-CeEEEEEEec
Confidence 3478899999877 5567777754
No 83
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.40 E-value=4.4e-13 Score=123.74 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=73.6
Q ss_pred CCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEE
Q 036401 1051 TKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIV 1130 (1154)
Q Consensus 1051 ~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~ 1130 (1154)
.+...+|..||||++|+++||++||+. |.+++|||||++|||.-+..+...|.+|+ ..+.++++
T Consensus 144 ek~~~YP~~LSGGQQQR~aIARaLame----P~vmLFDEPTSALDPElVgEVLkv~~~LA------------eEgrTMv~ 207 (256)
T COG4598 144 EKADAYPAHLSGGQQQRVAIARALAME----PEVMLFDEPTSALDPELVGEVLKVMQDLA------------EEGRTMVV 207 (256)
T ss_pred hhhhcCccccCchHHHHHHHHHHHhcC----CceEeecCCcccCCHHHHHHHHHHHHHHH------------HhCCeEEE
Confidence 345578999999999999999999999 99999999999999999999999999994 46777999
Q ss_pred EEechhHHH-hccceEEEeecCCC
Q 036401 1131 ISLKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1131 it~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
|||-..++. .++.+ |+.++|.
T Consensus 208 VTHEM~FAR~Vss~v--~fLh~G~ 229 (256)
T COG4598 208 VTHEMGFARDVSSHV--IFLHQGK 229 (256)
T ss_pred EeeehhHHHhhhhhe--EEeecce
Confidence 999998886 55655 5555553
No 84
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=4.9e-13 Score=135.97 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=73.0
Q ss_pred CCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEE
Q 036401 1051 TKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIV 1130 (1154)
Q Consensus 1051 ~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~ 1130 (1154)
+...+.+..|||||+||+-||++||-. |++++||||++|+|+.+...+.++|.++. ..+..+++
T Consensus 131 ~~~~r~i~~LSGGQ~QRV~lARAL~~~----p~lllLDEP~~gvD~~~~~~i~~lL~~l~------------~eg~tIl~ 194 (254)
T COG1121 131 DLRDRQIGELSGGQKQRVLLARALAQN----PDLLLLDEPFTGVDVAGQKEIYDLLKELR------------QEGKTVLM 194 (254)
T ss_pred hhhCCcccccCcHHHHHHHHHHHhccC----CCEEEecCCcccCCHHHHHHHHHHHHHHH------------HCCCEEEE
Confidence 335688999999999999999999998 99999999999999999999999999995 34677999
Q ss_pred EEech-hHHHhccceEEEee
Q 036401 1131 ISLKD-SFYDKAEALVGVYR 1149 (1154)
Q Consensus 1131 it~~~-~~~~~~d~~~GV~~ 1149 (1154)
|||+. .++..+|+++.+.+
T Consensus 195 vtHDL~~v~~~~D~vi~Ln~ 214 (254)
T COG1121 195 VTHDLGLVMAYFDRVICLNR 214 (254)
T ss_pred EeCCcHHhHhhCCEEEEEcC
Confidence 99995 55569999987654
No 85
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.39 E-value=6.6e-13 Score=120.05 Aligned_cols=83 Identities=23% Similarity=0.348 Sum_probs=72.4
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..+.|-.||||+.+++|||+++.+- |.+++||||||+|||.-...+.++|+++. +.+..-+|||
T Consensus 135 adr~plhlsggqqqrvaiaralmmk----pqvllfdeptaaldpeitaqvv~iikel~------------~tgitqvivt 198 (242)
T COG4161 135 ADRYPLHLSGGQQQRVAIARALMME----PQVLLFDEPTAALDPEITAQIVSIIKELA------------ETGITQVIVT 198 (242)
T ss_pred cccCceecccchhhhHHHHHHHhcC----CcEEeecCcccccCHHHHHHHHHHHHHHH------------hcCceEEEEE
Confidence 3456779999999999999999988 99999999999999999999999999993 3455567799
Q ss_pred echhHHH-hccceEEEeecCCC
Q 036401 1133 LKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1133 ~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
|.-++.. .|.++ |||++|+
T Consensus 199 hev~va~k~as~v--vyme~g~ 218 (242)
T COG4161 199 HEVEVARKTASRV--VYMENGH 218 (242)
T ss_pred eehhHHHhhhhhe--EeeecCe
Confidence 9987776 77887 9999986
No 86
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.38 E-value=7.2e-13 Score=135.68 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=73.9
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..+.+..|||||||++.||.+||-. ||+++|||||++||..|.-.++++++++.+ ..+..+|+|+
T Consensus 132 a~r~~~~LSGGerQrv~iArALaQ~----~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~-----------~~~~tvv~vl 196 (258)
T COG1120 132 ADRPVDELSGGERQRVLIARALAQE----TPILLLDEPTSHLDIAHQIEVLELLRDLNR-----------EKGLTVVMVL 196 (258)
T ss_pred hcCcccccChhHHHHHHHHHHHhcC----CCEEEeCCCccccCHHHHHHHHHHHHHHHH-----------hcCCEEEEEe
Confidence 4578999999999999999999998 999999999999999999999999999941 3577899999
Q ss_pred echhHHH-hccceEEEeecCCC
Q 036401 1133 LKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1133 ~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
|+.+.+. +||++ |-|.+|+
T Consensus 197 HDlN~A~ryad~~--i~lk~G~ 216 (258)
T COG1120 197 HDLNLAARYADHL--ILLKDGK 216 (258)
T ss_pred cCHHHHHHhCCEE--EEEECCe
Confidence 9986665 99999 5566664
No 87
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.38 E-value=3.6e-13 Score=150.80 Aligned_cols=84 Identities=26% Similarity=0.284 Sum_probs=75.6
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..++|++||||||||+|||++||.. |.++|+|||+++||+.....+.++|+++..+ -+..|||||
T Consensus 423 l~ryP~elSGGQrQRvaIARALa~~----P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e-----------~g~t~lfIS 487 (539)
T COG1123 423 LDRYPHELSGGQRQRVAIARALALE----PKLLILDEPVSALDVSVQAQVLNLLKDLQEE-----------LGLTYLFIS 487 (539)
T ss_pred HhcCchhcCcchhHHHHHHHHHhcC----CCEEEecCCccccCHHHHHHHHHHHHHHHHH-----------hCCEEEEEe
Confidence 4578999999999999999999999 9999999999999999999999999999532 356799999
Q ss_pred echhHHH-hccceEEEeecCCC
Q 036401 1133 LKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1133 ~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
|+..++. .||++ +.|+.|+
T Consensus 488 HDl~vV~~i~drv--~vm~~G~ 507 (539)
T COG1123 488 HDLAVVRYIADRV--AVMYDGR 507 (539)
T ss_pred CCHHHHHhhCceE--EEEECCe
Confidence 9988886 89999 6688776
No 88
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.38 E-value=7.5e-13 Score=124.22 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=73.5
Q ss_pred CCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeE
Q 036401 1049 PPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQS 1128 (1154)
Q Consensus 1049 ~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~ 1128 (1154)
..++....|.+|||||+|+++||++++.. |++++.||||.+|||.+...++.++.++. ..++++
T Consensus 127 L~~k~~~lP~~LSGGEQQRvaIARAiV~~----P~vLlADEPTGNLDp~~s~~im~lfeein------------r~GtTV 190 (223)
T COG2884 127 LKHKARALPSQLSGGEQQRVAIARAIVNQ----PAVLLADEPTGNLDPDLSWEIMRLFEEIN------------RLGTTV 190 (223)
T ss_pred cchhhhcCccccCchHHHHHHHHHHHccC----CCeEeecCCCCCCChHHHHHHHHHHHHHh------------hcCcEE
Confidence 34555677899999999999999999999 99999999999999999999999999994 356779
Q ss_pred EEEEechhHHHhc-cceEEEeecCCC
Q 036401 1129 IVISLKDSFYDKA-EALVGVYRDSDR 1153 (1154)
Q Consensus 1129 i~it~~~~~~~~~-d~~~GV~~~~~~ 1153 (1154)
++.||+..++..+ -++ ++-++|+
T Consensus 191 l~ATHd~~lv~~~~~rv--l~l~~Gr 214 (223)
T COG2884 191 LMATHDLELVNRMRHRV--LALEDGR 214 (223)
T ss_pred EEEeccHHHHHhccCcE--EEEeCCE
Confidence 9999999999754 333 4455554
No 89
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.38 E-value=8.1e-13 Score=138.24 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=70.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++|||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 134 ~~~~~LSgG~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tii~vsH~ 197 (216)
T TIGR00960 134 ALPMQLSGGEQQRVAIARAIVHK----PPLLLADEPTGNLDPELSRDIMRLFEEFN------------RRGTTVLVATHD 197 (216)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCC
Confidence 45679999999999999999998 99999999999999999999999999983 246679999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||++ +.+++|+
T Consensus 198 ~~~~~~~~d~i--~~l~~G~ 215 (216)
T TIGR00960 198 INLVETYRHRT--LTLSRGR 215 (216)
T ss_pred HHHHHHhCCEE--EEEeCCc
Confidence 77665 89998 5566775
No 90
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.37 E-value=7.8e-13 Score=138.69 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=71.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. ||++|||||+++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 136 ~~~~~LS~G~~qrv~la~al~~~----p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-----------~~~~tii~~sH~ 200 (218)
T cd03255 136 HYPSELSGGQQQRVAIARALAND----PKIILADEPTGNLDSETGKEVMELLRELNK-----------EAGTTIVVVTHD 200 (218)
T ss_pred cChhhcCHHHHHHHHHHHHHccC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-----------hcCCeEEEEECC
Confidence 45679999999999999999988 999999999999999999999999999931 136679999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||++ +.+++|+
T Consensus 201 ~~~~~~~d~v--~~l~~G~ 217 (218)
T cd03255 201 PELAEYADRI--IELRDGK 217 (218)
T ss_pred HHHHhhhcEE--EEeeCCc
Confidence 8777799998 5567775
No 91
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.36 E-value=1.2e-12 Score=136.41 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=69.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 130 ~~~~~LSgG~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~~~~~l~~~~------------~~~~tvi~~sH~ 193 (211)
T cd03225 130 RSPFTLSGGQKQRVAIAGVLAMD----PDILLLDEPTAGLDPAGRRELLELLKKLK------------AEGKTIIIVTHD 193 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHH------------HcCCEEEEEeCC
Confidence 45679999999999999999987 99999999999999999999999999983 236779999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++ .+.+|+
T Consensus 194 ~~~~~~~~d~i~--~l~~G~ 211 (211)
T cd03225 194 LDLLLELADRVI--VLEDGK 211 (211)
T ss_pred HHHHHHhCCEEE--EEeCCC
Confidence 77665 699994 455553
No 92
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.35 E-value=1e-12 Score=136.88 Aligned_cols=49 Identities=37% Similarity=0.773 Sum_probs=41.8
Q ss_pred EEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc
Q 036401 12 RLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ 61 (1154)
Q Consensus 12 ~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~ 61 (1154)
+|.|+||+||.+.+ |.|.+|+|+|+||||||||||++||+||||+..+.
T Consensus 1 ~i~i~nf~~~~~~~-i~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~~ 49 (202)
T PF13476_consen 1 KIHIKNFRSFKDLE-IDFSPGLNVIYGPNGSGKSTILEAIRYALGGQSSR 49 (202)
T ss_dssp EEEEEEETTEEEEE-EE--SEEEEEEESTTSSHHHHHHHHHHHHHSS-TT
T ss_pred CEEEEEeCCCcceE-EEcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 68999999998866 66667899999999999999999999999997754
No 93
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.35 E-value=1.5e-12 Score=132.29 Aligned_cols=86 Identities=38% Similarity=0.648 Sum_probs=67.9
Q ss_pred eeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-ccccccchhhhcccchhhhcccceEEE
Q 036401 10 IHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGGQLKDLIYAYDDKEKEQKGRRAFV 88 (1154)
Q Consensus 10 i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~~~~~~I~~g~~~~~~~~~~~a~v 88 (1154)
|++|.+.||+||+....+.+.+|+++|+|||||||||+++||+|++|..... .|+....++++.|... ......+.|
T Consensus 1 ~~~~~~~~fr~~~~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v 78 (197)
T cd03278 1 LKKLELKGFKSFADKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSET--RKPANFAEV 78 (197)
T ss_pred CcEEEEeCCcCcCCCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCC--CCCCceEEE
Confidence 5789999999995544455555699999999999999999999999876443 7888888999987532 123346889
Q ss_pred EEEEEeCCC
Q 036401 89 RLVYQLGNE 97 (1154)
Q Consensus 89 ~~~~~~~~~ 97 (1154)
.++|++.+.
T Consensus 79 ~~vfq~~~~ 87 (197)
T cd03278 79 TLTFDNSDG 87 (197)
T ss_pred EEEEEcCCC
Confidence 999987754
No 94
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.35 E-value=1.5e-12 Score=136.14 Aligned_cols=81 Identities=27% Similarity=0.327 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 133 ~~~~~LS~G~~qrl~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tii~~tH~ 196 (214)
T TIGR02673 133 AFPEQLSGGEQQRVAIARAIVNS----PPLLLADEPTGNLDPDLSERILDLLKRLN------------KRGTTVIVATHD 196 (214)
T ss_pred CChhhCCHHHHHHHHHHHHHhCC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------HcCCEEEEEeCC
Confidence 34679999999999999999987 99999999999999999999999999983 246779999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++ .+++|+
T Consensus 197 ~~~~~~~~d~i~--~l~~G~ 214 (214)
T TIGR02673 197 LSLVDRVAHRVI--ILDDGR 214 (214)
T ss_pred HHHHHHhcCEEE--EecCCC
Confidence 76665 799985 455654
No 95
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.34 E-value=1.3e-12 Score=143.79 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=71.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++.+||||||++++||++|+.. |++++|||||++||+.++..+.++|+++.+ ..+.++|+|||+
T Consensus 136 ~~~~~LSgGqkQRV~IARAL~~~----P~iLLlDEPts~LD~~t~~~i~~lL~~l~~-----------~~g~tiiliTH~ 200 (343)
T TIGR02314 136 SYPSNLSGGQKQRVAIARALASN----PKVLLCDEATSALDPATTQSILELLKEINR-----------RLGLTILLITHE 200 (343)
T ss_pred CChhhCCHHHHHHHHHHHHHHhC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 56789999999999999999998 999999999999999999999999999931 136789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||++ +.|++|+
T Consensus 201 ~~~v~~~~d~v--~vl~~G~ 218 (343)
T TIGR02314 201 MDVVKRICDCV--AVISNGE 218 (343)
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 7776 689999 4566664
No 96
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.34 E-value=1.8e-12 Score=134.18 Aligned_cols=81 Identities=27% Similarity=0.364 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |++++||||+++||+.++..+.++|.++. ..+..+|++||+
T Consensus 122 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tii~~sH~ 185 (205)
T cd03226 122 RHPLSLSGGQKQRLAIAAALLSG----KDLLIFDEPTSGLDYKNMERVGELIRELA------------AQGKAVIVITHD 185 (205)
T ss_pred CCchhCCHHHHHHHHHHHHHHhC----CCEEEEeCCCccCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCC
Confidence 45779999999999999999987 99999999999999999999999999983 246679999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++ .+++|+
T Consensus 186 ~~~~~~~~d~i~--~l~~G~ 203 (205)
T cd03226 186 YEFLAKVCDRVL--LLANGA 203 (205)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 77664 899985 445554
No 97
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.34 E-value=1.5e-12 Score=136.90 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=70.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++||||||++||+.++..+.++|..+.+ ..+..+|+|||+
T Consensus 137 ~~~~~LS~G~~qrv~laral~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tii~~tH~ 201 (221)
T TIGR02211 137 HRPSELSGGERQRVAIARALVNQ----PSLVLADEPTGNLDNNNAKIIFDLMLELNR-----------ELNTSFLVVTHD 201 (221)
T ss_pred CChhhCCHHHHHHHHHHHHHhCC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 44679999999999999999988 999999999999999999999999999831 135679999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+++|+
T Consensus 202 ~~~~~~~d~v~--~l~~G~ 218 (221)
T TIGR02211 202 LELAKKLDRVL--EMKDGQ 218 (221)
T ss_pred HHHHhhcCEEE--EEeCCE
Confidence 88888899884 455554
No 98
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.4e-12 Score=142.24 Aligned_cols=82 Identities=22% Similarity=0.345 Sum_probs=71.5
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||.+|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~~----P~lLlLDEPt~~LD~~~~~~l~~~l~~l~------------~~g~tiiivtH 223 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAME----PDFLVFDEPTAGLDPQGVKEILEIFDNLN------------KQGKTIILVTH 223 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHH------------HCCCEEEEEee
Confidence 356889999999999999999999 99999999999999999999999999993 24677999999
Q ss_pred chh-HHHhccceEEEeecCCC
Q 036401 1134 KDS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
+.. +...||+++ .+.+|+
T Consensus 224 d~~~~~~~adrv~--vl~~G~ 242 (305)
T PRK13651 224 DLDNVLEWTKRTI--FFKDGK 242 (305)
T ss_pred CHHHHHHhCCEEE--EEECCE
Confidence 976 457999994 456664
No 99
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.33 E-value=2.5e-12 Score=128.79 Aligned_cols=76 Identities=24% Similarity=0.308 Sum_probs=68.2
Q ss_pred CchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHH
Q 036401 1060 LSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYD 1139 (1154)
Q Consensus 1060 lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~ 1139 (1154)
|||||+++++||++|+.. |+++|||||+++||+..+..+.++|..+. ..+..+|+|||+...+.
T Consensus 97 LS~G~~qrv~la~al~~~----p~~lllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 97 LSGGQRQRLGLARALYGN----PRILVLDEPNSHLDVEGERALNQAIAALK------------AAGATRIVIAHRPETLA 160 (173)
T ss_pred cCHHHHHHHHHHHHHhcC----CCEEEEECCccccCHHHHHHHHHHHHHHH------------hCCCEEEEEeCCHHHHH
Confidence 999999999999999988 99999999999999999999999999983 24678999999988888
Q ss_pred hccceEEEeecCCC
Q 036401 1140 KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1140 ~~d~~~GV~~~~~~ 1153 (1154)
.||+++ .+.+|+
T Consensus 161 ~~d~v~--~l~~G~ 172 (173)
T cd03246 161 SADRIL--VLEDGR 172 (173)
T ss_pred hCCEEE--EEECCC
Confidence 999984 456665
No 100
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.33 E-value=2.3e-12 Score=134.43 Aligned_cols=77 Identities=19% Similarity=0.310 Sum_probs=68.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 128 ~~~~~LSgG~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tvi~~sH~ 191 (213)
T cd03235 128 RQIGELSGGQQQRVLLARALVQD----PDLLLLDEPFAGVDPKTQEDIYELLRELR------------REGMTILVVTHD 191 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------hcCCEEEEEeCC
Confidence 45779999999999999999987 99999999999999999999999999983 246679999999
Q ss_pred hhHH-HhccceEEE
Q 036401 1135 DSFY-DKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV 1147 (1154)
...+ ..||+++-+
T Consensus 192 ~~~~~~~~d~i~~l 205 (213)
T cd03235 192 LGLVLEYFDRVLLL 205 (213)
T ss_pred HHHHHHhcCEEEEE
Confidence 7766 589999644
No 101
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.7e-12 Score=135.50 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=69.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. ||++||||||++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 126 ~~~~~LSgG~~qrl~la~al~~~----p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tii~~sH~ 190 (213)
T cd03259 126 RYPHELSGGQQQRVALARALARE----PSLLLLDEPLSALDAKLREELREELKELQR-----------ELGITTIYVTHD 190 (213)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEecC
Confidence 44679999999999999999988 999999999999999999999999999831 136779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++-+ ++|+
T Consensus 191 ~~~~~~~~d~v~~l--~~G~ 208 (213)
T cd03259 191 QEEALALADRIAVM--NEGR 208 (213)
T ss_pred HHHHHHhcCEEEEE--ECCE
Confidence 7654 689998643 4553
No 102
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.32 E-value=1.6e-12 Score=135.89 Aligned_cols=89 Identities=22% Similarity=0.335 Sum_probs=77.9
Q ss_pred cCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCee
Q 036401 1048 MPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQ 1127 (1154)
Q Consensus 1048 ~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q 1127 (1154)
.+|..++++|+.+|||+||++|||+++++. |.|++|||||++||..-...+.++|+.|.. ..+--
T Consensus 415 LDp~~r~RYPhEFSGGQRQRIAIARAliLk----P~~i~LDEPTSALD~SVQaQvv~LLr~LQ~-----------k~~Ls 479 (534)
T COG4172 415 LDPATRNRYPHEFSGGQRQRIAIARALILK----PELILLDEPTSALDRSVQAQVLDLLRDLQQ-----------KHGLS 479 (534)
T ss_pred CChhHhhcCCcccCcchhhHHHHHHHHhcC----CcEEEecCCchHhhHHHHHHHHHHHHHHHH-----------HhCCe
Confidence 345557789999999999999999999999 999999999999999999999999999942 23566
Q ss_pred EEEEEechhHHH-hccceEEEeecCCC
Q 036401 1128 SIVISLKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1128 ~i~it~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
++||||+..++. .||.+ +.|.+|+
T Consensus 480 YLFISHDL~VvrAl~~~v--iVm~~Gk 504 (534)
T COG4172 480 YLFISHDLAVVRALCHRV--IVMRDGK 504 (534)
T ss_pred EEEEeccHHHHHHhhceE--EEEeCCE
Confidence 999999988886 89998 5678775
No 103
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.32 E-value=1.9e-12 Score=145.18 Aligned_cols=82 Identities=22% Similarity=0.292 Sum_probs=74.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
++|++||||||||+.||.++|.. |+++|+||||.+||+.....+.+.|+++.+ ..++-+|+|||+
T Consensus 150 ~yPheLSGG~rQRv~iAmALa~~----P~LLIaDEPTTaLDvt~q~qIL~llk~l~~-----------e~g~a~l~ITHD 214 (539)
T COG1123 150 RYPHQLSGGMRQRVMIAMALALK----PKLLIADEPTTALDVTTQAQILDLLKDLQR-----------ELGMAVLFITHD 214 (539)
T ss_pred cCCcccCchHHHHHHHHHHHhCC----CCEEEECCCccccCHHHHHHHHHHHHHHHH-----------HcCcEEEEEcCC
Confidence 58999999999999999999999 999999999999999999999999999942 357779999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
..++. .||++ |.|+.|+
T Consensus 215 l~Vva~~aDrv--~Vm~~G~ 232 (539)
T COG1123 215 LGVVAELADRV--VVMYKGE 232 (539)
T ss_pred HHHHHHhcCeE--EEEECCE
Confidence 88875 99999 6677775
No 104
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=2.1e-12 Score=137.06 Aligned_cols=82 Identities=24% Similarity=0.287 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++|||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 132 ~~~~~LSgG~~qrv~ia~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tvi~vsH~ 196 (235)
T cd03261 132 LYPAELSGGMKKRVALARALALD----PELLLYDEPTAGLDPIASGVIDDLIRSLKK-----------ELGLTSIMVTHD 196 (235)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCcccCCHHHHHHHHHHHHHHHH-----------hcCcEEEEEecC
Confidence 45679999999999999999988 999999999999999999999999999831 125679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 197 ~~~~~~~~d~v~--~l~~G~ 214 (235)
T cd03261 197 LDTAFAIADRIA--VLYDGK 214 (235)
T ss_pred HHHHHHhcCEEE--EEECCe
Confidence 7665 5899995 445554
No 105
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.31 E-value=2.9e-12 Score=129.27 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=70.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCC-CeeEEEEEe
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGN-GFQSIVISL 1133 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~-~~q~i~it~ 1133 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++. .. +.++|+|||
T Consensus 93 ~~~~~LS~G~~qrl~laral~~~----p~llllDEP~~~LD~~~~~~~~~~l~~~~------------~~~~~tiii~sh 156 (180)
T cd03214 93 RPFNELSGGERQRVLLARALAQE----PPILLLDEPTSHLDIAHQIELLELLRRLA------------RERGKTVVMVLH 156 (180)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHH------------HhcCCEEEEEeC
Confidence 45779999999999999999988 99999999999999999999999999983 22 678999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++- +.+|+
T Consensus 157 ~~~~~~~~~d~~~~--l~~g~ 175 (180)
T cd03214 157 DLNLAARYADRVIL--LKDGR 175 (180)
T ss_pred CHHHHHHhCCEEEE--EECCE
Confidence 97765 78999963 44553
No 106
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.31 E-value=1.8e-12 Score=142.92 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=71.5
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++.. ..+..+|||||
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~----P~llilDEPts~LD~~~~~~i~~lL~~l~~-----------~~~~til~iTH 220 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILE----PKLIICDEPVSALDVSIQAQVVNLLQQLQR-----------EMGLSLIFIAH 220 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEeC
Confidence 356789999999999999999999 999999999999999999999999999831 13678999999
Q ss_pred chhHHH-hccceEEEeecCCC
Q 036401 1134 KDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
+...+. .||+++ .|..|+
T Consensus 221 dl~~~~~~~dri~--vl~~G~ 239 (331)
T PRK15079 221 DLAVVKHISDRVL--VMYLGH 239 (331)
T ss_pred CHHHHHHhCCEEE--EEECCE
Confidence 977775 899994 455554
No 107
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=2.6e-12 Score=139.80 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=70.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||.+|+.. |+++||||||++||+.++..+.++|..+. ..+.++|+|||+
T Consensus 140 ~~~~~LSgGqkqrvaiA~aL~~~----p~illLDEPt~gLD~~~~~~l~~~l~~l~------------~~g~til~vtHd 203 (288)
T PRK13643 140 KSPFELSGGQMRRVAIAGILAME----PEVLVLDEPTAGLDPKARIEMMQLFESIH------------QSGQTVVLVTHL 203 (288)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC----CCEEEEECCccCCCHHHHHHHHHHHHHHH------------HCCCEEEEEecC
Confidence 56789999999999999999998 99999999999999999999999999983 246789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .|.+|+
T Consensus 204 ~~~~~~~~dri~--~l~~G~ 221 (288)
T PRK13643 204 MDDVADYADYVY--LLEKGH 221 (288)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7755 6899995 455554
No 108
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.7e-12 Score=120.56 Aligned_cols=85 Identities=24% Similarity=0.287 Sum_probs=74.1
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++.+||||+||++.||++||.. |.|++||||.++||.-.|+.+-.+|.++- + ..+.|+++|||
T Consensus 127 ~~~i~qLSGGmrQRvGiARALa~e----P~~LlLDEPfgAlDa~tRe~mQelLldlw----------~-~tgk~~lliTH 191 (259)
T COG4525 127 HKYIWQLSGGMRQRVGIARALAVE----PQLLLLDEPFGALDALTREQMQELLLDLW----------Q-ETGKQVLLITH 191 (259)
T ss_pred ccceEeecchHHHHHHHHHHhhcC----cceEeecCchhhHHHHHHHHHHHHHHHHH----------H-HhCCeEEEEec
Confidence 467889999999999999999999 99999999999999999999999999883 2 36889999999
Q ss_pred c-hhHHHhccceEEEeecCCC
Q 036401 1134 K-DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~-~~~~~~~d~~~GV~~~~~~ 1153 (1154)
. .+..-.|++++-....|||
T Consensus 192 ~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 192 DIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cHHHHHhhhheeEEecCCCce
Confidence 9 5666799999655555564
No 109
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.31 E-value=2.3e-12 Score=133.89 Aligned_cols=81 Identities=21% Similarity=0.205 Sum_probs=70.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||+++|||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 122 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tii~~tH~ 185 (208)
T cd03268 122 KKVKGFSLGMKQRLGIALALLGN----PDLLILDEPTNGLDPDGIKELRELILSLR------------DQGITVLISSHL 185 (208)
T ss_pred hhHhhCCHHHHHHHHHHHHHhcC----CCEEEECCCcccCCHHHHHHHHHHHHHHH------------HCCCEEEEEcCC
Confidence 45779999999999999999987 99999999999999999999999999983 246789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +++|+
T Consensus 186 ~~~~~~~~d~v~~--l~~g~ 203 (208)
T cd03268 186 LSEIQKVADRIGI--INKGK 203 (208)
T ss_pred HHHHHHhcCEEEE--EECCE
Confidence 8766 58999854 45554
No 110
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.31 E-value=3.6e-12 Score=133.35 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=70.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 132 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~~~~~l~~~~------------~~~~tiiivtH~ 195 (214)
T cd03292 132 ALPAELSGGEQQRVAIARAIVNS----PTILIADEPTGNLDPDTTWEIMNLLKKIN------------KAGTTVVVATHA 195 (214)
T ss_pred CChhhcCHHHHHHHHHHHHHHcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHH------------HcCCEEEEEeCC
Confidence 34679999999999999999987 99999999999999999999999999983 246679999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++ .+++|+
T Consensus 196 ~~~~~~~~d~i~--~l~~G~ 213 (214)
T cd03292 196 KELVDTTRHRVI--ALERGK 213 (214)
T ss_pred HHHHHHhCCEEE--EEeCCc
Confidence 77765 799984 456665
No 111
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.31 E-value=3e-12 Score=134.77 Aligned_cols=82 Identities=22% Similarity=0.201 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++|||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 110 ~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-----------~~~~tii~~sH~ 174 (230)
T TIGR01184 110 KRPGQLSGGMKQRVAIARALSIR----PKVLLLDEPFGALDALTRGNLQEELMQIWE-----------EHRVTVLMVTHD 174 (230)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 34678999999999999999998 999999999999999999999999999831 135679999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++ .+++|+
T Consensus 175 ~~~~~~~~d~v~--~l~~G~ 192 (230)
T TIGR01184 175 VDEALLLSDRVV--MLTNGP 192 (230)
T ss_pred HHHHHHhcCEEE--EEeCCc
Confidence 765 46899984 455554
No 112
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=3.3e-12 Score=133.94 Aligned_cols=77 Identities=23% Similarity=0.200 Sum_probs=66.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 127 ~~~~~LSgG~~qrl~la~al~~~----p~lllLDEPt~~LD~~~~~~~~~~l~~~~~-----------~~~~tiii~sH~ 191 (220)
T cd03293 127 AYPHQLSGGMRQRVALARALAVD----PDVLLLDEPFSALDALTREQLQEELLDIWR-----------ETGKTVLLVTHD 191 (220)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEECCCCCCCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEecC
Confidence 34578999999999999999998 999999999999999999999999998831 135679999999
Q ss_pred hhH-HHhccceEE
Q 036401 1135 DSF-YDKAEALVG 1146 (1154)
Q Consensus 1135 ~~~-~~~~d~~~G 1146 (1154)
... ...||+++-
T Consensus 192 ~~~~~~~~d~i~~ 204 (220)
T cd03293 192 IDEAVFLADRVVV 204 (220)
T ss_pred HHHHHHhCCEEEE
Confidence 775 568999853
No 113
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.30 E-value=3.6e-12 Score=120.59 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=69.4
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec-
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK- 1134 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~- 1134 (1154)
...+||||||.++-||++||.. |.|++||||+||.||..+..+..+++.|. +.+.=++|+-||
T Consensus 136 ~a~sLSGGERRR~EIARaLa~~----P~fiLLDEPFAGVDPiaV~dIq~iI~~L~------------~rgiGvLITDHNV 199 (243)
T COG1137 136 KAYSLSGGERRRVEIARALAAN----PKFILLDEPFAGVDPIAVIDIQRIIKHLK------------DRGIGVLITDHNV 199 (243)
T ss_pred cccccccchHHHHHHHHHHhcC----CCEEEecCCccCCCchhHHHHHHHHHHHH------------hCCceEEEccccH
Confidence 3458999999999999999999 99999999999999999999999999995 345558888899
Q ss_pred hhHHHhccceEEEe
Q 036401 1135 DSFYDKAEALVGVY 1148 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~ 1148 (1154)
.+++..||+.|-|+
T Consensus 200 REtL~i~dRaYIi~ 213 (243)
T COG1137 200 RETLDICDRAYIIS 213 (243)
T ss_pred HHHHhhhheEEEEe
Confidence 89999999999774
No 114
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2.3e-12 Score=141.87 Aligned_cols=82 Identities=23% Similarity=0.227 Sum_probs=71.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.++.|||||+|+++||++|+.. |+++|+||||++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 150 ~~p~~LSgGq~QRv~iArAL~~~----P~lLilDEPts~LD~~~~~~i~~lL~~l~~-----------~~g~til~iTHd 214 (327)
T PRK11308 150 RYPHMFSGGQRQRIAIARALMLD----PDVVVADEPVSALDVSVQAQVLNLMMDLQQ-----------ELGLSYVFISHD 214 (327)
T ss_pred CCCccCCHHHHHHHHHHHHHHcC----CCEEEEECCCccCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEeCC
Confidence 56789999999999999999998 999999999999999999999999999842 136779999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
..++. +||+++ .|+.|+
T Consensus 215 l~~~~~~adrv~--vm~~G~ 232 (327)
T PRK11308 215 LSVVEHIADEVM--VMYLGR 232 (327)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 88775 899995 455554
No 115
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=3.3e-12 Score=140.82 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=71.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+++|||||+|+++||++|+.. |+++|+||||++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 149 ~~p~~LSgGq~QRv~iArAL~~~----P~llilDEPts~LD~~~~~~il~lL~~l~~-----------~~g~til~iTHd 213 (326)
T PRK11022 149 VYPHQLSGGMSQRVMIAMAIACR----PKLLIADEPTTALDVTIQAQIIELLLELQQ-----------KENMALVLITHD 213 (326)
T ss_pred CCchhCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 56889999999999999999998 999999999999999999999999999931 136779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .|..|+
T Consensus 214 l~~~~~~adri~--vm~~G~ 231 (326)
T PRK11022 214 LALVAEAAHKII--VMYAGQ 231 (326)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7766 6899994 556664
No 116
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.30 E-value=2.9e-12 Score=140.67 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=70.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|++||+
T Consensus 120 ~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~~~------------~~g~tvi~~sH~ 183 (302)
T TIGR01188 120 RPVGTYSGGMRRRLDIAASLIHQ----PDVLFLDEPTTGLDPRTRRAIWDYIRALK------------EEGVTILLTTHY 183 (302)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHH------------hCCCEEEEECCC
Confidence 45779999999999999999998 99999999999999999999999999993 246789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 184 ~~~~~~~~d~v~--~l~~G~ 201 (302)
T TIGR01188 184 MEEADKLCDRIA--IIDHGR 201 (302)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7665 5899984 455554
No 117
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.30 E-value=3.4e-12 Score=139.75 Aligned_cols=81 Identities=21% Similarity=0.170 Sum_probs=70.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.++.||||||++++||.+|+.. |+++||||||+|||+.++..+.++|.++. ..+.++|++||+
T Consensus 134 ~~~~~LS~G~~qrl~la~aL~~~----P~lllLDEPt~gLD~~~~~~l~~~l~~l~------------~~g~till~sH~ 197 (306)
T PRK13537 134 AKVGELSGGMKRRLTLARALVND----PDVLVLDEPTTGLDPQARHLMWERLRSLL------------ARGKTILLTTHF 197 (306)
T ss_pred CchhhCCHHHHHHHHHHHHHhCC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHH------------hCCCEEEEECCC
Confidence 45679999999999999999998 99999999999999999999999999993 346789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||++ +.+++|+
T Consensus 198 l~e~~~~~d~i--~il~~G~ 215 (306)
T PRK13537 198 MEEAERLCDRL--CVIEEGR 215 (306)
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 7655 689999 4455554
No 118
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=3.3e-12 Score=136.37 Aligned_cols=82 Identities=24% Similarity=0.335 Sum_probs=70.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++|||||+++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 140 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tii~~tH~ 204 (241)
T cd03256 140 QRADQLSGGQQQRVAIARALMQQ----PKLILADEPVASLDPASSRQVMDLLKRINR-----------EEGITVIVSLHQ 204 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 45779999999999999999988 999999999999999999999999999831 136679999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++- +.+|+
T Consensus 205 ~~~~~~~~d~v~~--l~~G~ 222 (241)
T cd03256 205 VDLAREYADRIVG--LKDGR 222 (241)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 77665 8999853 45554
No 119
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.30 E-value=5.4e-12 Score=132.58 Aligned_cols=79 Identities=28% Similarity=0.391 Sum_probs=69.7
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++ .. +..+|+|||+.
T Consensus 137 ~~~~LSgG~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~------------~~-~~tii~~sH~~ 199 (220)
T cd03245 137 RGRGLSGGQRQAVALARALLND----PPILLLDEPTSAMDMNSEERLKERLRQL------------LG-DKTLIIITHRP 199 (220)
T ss_pred CCccCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHh------------cC-CCEEEEEeCCH
Confidence 4679999999999999999987 9999999999999999999999999999 32 37899999998
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
..+..||+++ .+++|+
T Consensus 200 ~~~~~~d~v~--~l~~g~ 215 (220)
T cd03245 200 SLLDLVDRII--VMDSGR 215 (220)
T ss_pred HHHHhCCEEE--EEeCCe
Confidence 8888999984 445554
No 120
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.30 E-value=7e-12 Score=123.74 Aligned_cols=85 Identities=24% Similarity=0.293 Sum_probs=71.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
...+..|||||+++++||.+++.. -||++++||||+++||+.++..+.++|.++. ..+..+|+|||
T Consensus 82 ~~~~~~LSgGq~qrl~laral~~~--~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~------------~~g~tvIivSH 147 (176)
T cd03238 82 GQKLSTLSGGELQRVKLASELFSE--PPGTLFILDEPSTGLHQQDINQLLEVIKGLI------------DLGNTVILIEH 147 (176)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhC--CCCCEEEEeCCcccCCHHHHHHHHHHHHHHH------------hCCCEEEEEeC
Confidence 356789999999999999998752 2389999999999999999999999999983 24677999999
Q ss_pred chhHHHhccceEEEeecCC
Q 036401 1134 KDSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1134 ~~~~~~~~d~~~GV~~~~~ 1152 (1154)
+......||+++-+...+|
T Consensus 148 ~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 148 NLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHhCCEEEEECCCCC
Confidence 9888889999966544444
No 121
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=4.4e-12 Score=127.69 Aligned_cols=76 Identities=24% Similarity=0.373 Sum_probs=66.9
Q ss_pred CchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCC-CeeEEEEEechhHH
Q 036401 1060 LSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGN-GFQSIVISLKDSFY 1138 (1154)
Q Consensus 1060 lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~-~~q~i~it~~~~~~ 1138 (1154)
|||||+++++||++|+.. ||++|||||+++||+.++..+.++|.++. .. +.++|+|||+...+
T Consensus 101 lS~G~~qr~~la~al~~~----p~llilDEP~~~LD~~~~~~l~~~l~~~~------------~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 101 LSGGQQQRVALARALAMD----PDVLLLDEPTSALDPITRREVRALLKSLQ------------AQLGITVVLVTHDLDEA 164 (178)
T ss_pred CCHHHHHHHHHHHHHHCC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------HhcCCEEEEEeCCHHHH
Confidence 999999999999999998 99999999999999999999999999983 23 57899999997777
Q ss_pred H-hccceEEEeecCCC
Q 036401 1139 D-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1139 ~-~~d~~~GV~~~~~~ 1153 (1154)
. .||+++ .+.+|+
T Consensus 165 ~~~~d~i~--~l~~g~ 178 (178)
T cd03229 165 ARLADRVV--VLRDGK 178 (178)
T ss_pred HHhcCEEE--EEeCCC
Confidence 6 899984 455553
No 122
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=4.6e-12 Score=126.91 Aligned_cols=76 Identities=24% Similarity=0.229 Sum_probs=67.2
Q ss_pred CchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHH
Q 036401 1060 LSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYD 1139 (1154)
Q Consensus 1060 lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~ 1139 (1154)
|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++. ..+.++|+|||+...+.
T Consensus 96 LS~G~~qrv~laral~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~------------~~g~tiii~th~~~~~~ 159 (173)
T cd03230 96 LSGGMKQRLALAQALLHD----PELLILDEPTSGLDPESRREFWELLRELK------------KEGKTILLSSHILEEAE 159 (173)
T ss_pred cCHHHHHHHHHHHHHHcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHH------------HCCCEEEEECCCHHHHH
Confidence 999999999999999988 99999999999999999999999999993 24678999999977665
Q ss_pred -hccceEEEeecCCC
Q 036401 1140 -KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1140 -~~d~~~GV~~~~~~ 1153 (1154)
.||+++ .+++|+
T Consensus 160 ~~~d~i~--~l~~g~ 172 (173)
T cd03230 160 RLCDRVA--ILNNGR 172 (173)
T ss_pred HhCCEEE--EEeCCC
Confidence 899995 455665
No 123
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.29 E-value=2.4e-12 Score=130.59 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=74.3
Q ss_pred CcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1052 KRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1052 ~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
...+++++|||||+||++||++||+. |.|+|+|||+++||...+..+..+|.++.. ..+..++||
T Consensus 102 ~~~ryPhelSGGQrQRi~IARALal~----P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-----------~~~lt~lFI 166 (268)
T COG4608 102 FLYRYPHELSGGQRQRIGIARALALN----PKLIVADEPVSALDVSVQAQILNLLKDLQE-----------ELGLTYLFI 166 (268)
T ss_pred HhhcCCcccCchhhhhHHHHHHHhhC----CcEEEecCchhhcchhHHHHHHHHHHHHHH-----------HhCCeEEEE
Confidence 45688999999999999999999999 999999999999999999999999999942 246779999
Q ss_pred EechhHHH-hccceEEEeecCCC
Q 036401 1132 SLKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1132 t~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
||+..++. +||++. -|.-|+
T Consensus 167 sHDL~vv~~isdri~--VMy~G~ 187 (268)
T COG4608 167 SHDLSVVRYISDRIA--VMYLGK 187 (268)
T ss_pred EEEHHhhhhhcccEE--EEecCc
Confidence 99998887 889873 455554
No 124
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.29 E-value=3.8e-12 Score=140.85 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=70.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||+++||||+++||+..+..+.+.|..+.. ..+.++|+|||+
T Consensus 125 ~~p~~LSGGq~QRV~lARAL~~~----p~iLLlDEP~saLD~~~r~~l~~~l~~l~~-----------~~~~Tii~vTHd 189 (363)
T TIGR01186 125 RYPDELSGGMQQRVGLARALAAE----PDILLMDEAFSALDPLIRDSMQDELKKLQA-----------TLQKTIVFITHD 189 (363)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 45779999999999999999988 999999999999999999999999999831 136789999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. .+..||++ +.|.+|+
T Consensus 190 ~~ea~~~~drI--~vl~~G~ 207 (363)
T TIGR01186 190 LDEAIRIGDRI--VIMKAGE 207 (363)
T ss_pred HHHHHHhCCEE--EEEeCCE
Confidence 65 56789999 4566664
No 125
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.29 E-value=3.8e-12 Score=141.47 Aligned_cols=83 Identities=22% Similarity=0.153 Sum_probs=71.8
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCC-CeeEEEEE
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGN-GFQSIVIS 1132 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~-~~q~i~it 1132 (1154)
.+.+..||||||++++||++|+.. |++++||||+++||+..+..+...|.++.. .. +.++|+||
T Consensus 132 ~~~~~~LSgGq~QRvaLARAL~~~----P~llLLDEP~s~LD~~~r~~l~~~l~~l~~-----------~~~g~til~vT 196 (362)
T TIGR03258 132 AHLPAQLSGGMQQRIAIARAIAIE----PDVLLLDEPLSALDANIRANMREEIAALHE-----------ELPELTILCVT 196 (362)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCccccCCHHHHHHHHHHHHHHHH-----------hCCCCEEEEEe
Confidence 356789999999999999999998 999999999999999999999999999831 11 57899999
Q ss_pred echh-HHHhccceEEEeecCCC
Q 036401 1133 LKDS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1133 ~~~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
|+.. .+.+||++ +.|++|+
T Consensus 197 Hd~~ea~~l~dri--~vl~~G~ 216 (362)
T TIGR03258 197 HDQDDALTLADKA--GIMKDGR 216 (362)
T ss_pred CCHHHHHHhCCEE--EEEECCE
Confidence 9954 56799999 5667775
No 126
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=3.2e-12 Score=139.24 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=70.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++..|||||+++++||.+|+.. |+++||||||++||+..+..+.++|.++. ...+.++|+|||+
T Consensus 141 ~~~~~LSgGq~qrv~lAraL~~~----P~llllDEPt~~LD~~~~~~l~~~L~~l~-----------~~~g~tviiitHd 205 (290)
T PRK13634 141 RSPFELSGGQMRRVAIAGVLAME----PEVLVLDEPTAGLDPKGRKEMMEMFYKLH-----------KEKGLTTVLVTHS 205 (290)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHHH-----------HhcCCEEEEEeCC
Confidence 56789999999999999999998 99999999999999999999999999983 1136789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 206 ~~~~~~~~drv~--~l~~G~ 223 (290)
T PRK13634 206 MEDAARYADQIV--VMHKGT 223 (290)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7655 6899994 455554
No 127
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=3.4e-12 Score=141.97 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=71.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+|+++||++|+.. |++++||||+++||+.++..+.+.|+.+.+ ..+..+|+|||+
T Consensus 130 ~~~~~LSgGq~QRvalARAL~~~----P~llLLDEP~s~LD~~~r~~l~~~l~~l~~-----------~~g~tii~vTHd 194 (356)
T PRK11650 130 RKPRELSGGQRQRVAMGRAIVRE----PAVFLFDEPLSNLDAKLRVQMRLEIQRLHR-----------RLKTTSLYVTHD 194 (356)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 56789999999999999999988 999999999999999999999999999831 136789999999
Q ss_pred h-hHHHhccceEEEeecCCC
Q 036401 1135 D-SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~-~~~~~~d~~~GV~~~~~~ 1153 (1154)
. +.+..||++ +.|++|+
T Consensus 195 ~~ea~~l~D~i--~vl~~G~ 212 (356)
T PRK11650 195 QVEAMTLADRV--VVMNGGV 212 (356)
T ss_pred HHHHHHhCCEE--EEEeCCE
Confidence 5 567899999 5566665
No 128
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.29 E-value=5e-12 Score=132.18 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=70.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++. ..+..+|++||+
T Consensus 131 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~------------~~~~tvi~~sh~ 194 (213)
T cd03262 131 AYPAQLSGGQQQRVAIARALAMN----PKVMLFDEPTSALDPELVGEVLDVMKDLA------------EEGMTMVVVTHE 194 (213)
T ss_pred hCccccCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHH------------HcCCEEEEEeCC
Confidence 45679999999999999999998 99999999999999999999999999993 235679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 195 ~~~~~~~~d~i~--~l~~g~ 212 (213)
T cd03262 195 MGFAREVADRVI--FMDDGR 212 (213)
T ss_pred HHHHHHhCCEEE--EEeCCc
Confidence 7766 5899985 456665
No 129
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=3.5e-12 Score=140.04 Aligned_cols=82 Identities=26% Similarity=0.317 Sum_probs=71.2
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|..+. ..+.++|+|||
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~~~----p~iLLLDEPtsgLD~~~~~~l~~~L~~l~------------~~g~TiiivtH 234 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQ----PEILIFDEPTAGLDPKGEHEMMQLILDAK------------ANNKTVFVITH 234 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcC----CCEEEEECCccCCCHHHHHHHHHHHHHHH------------HCCCEEEEEec
Confidence 356789999999999999999998 99999999999999999999999999983 24678999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++ .+.+|+
T Consensus 235 d~~~~~~~adri~--vl~~G~ 253 (320)
T PRK13631 235 TMEHVLEVADEVI--VMDKGK 253 (320)
T ss_pred CHHHHHHhCCEEE--EEECCE
Confidence 98755 6899984 455554
No 130
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.29 E-value=4e-12 Score=140.44 Aligned_cols=82 Identities=22% Similarity=0.167 Sum_probs=71.0
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..||||||++++||++|+.. |+++||||||+|||+.++..+.++|.++. ..+..+|++||
T Consensus 167 ~~~~~~LS~G~kqrv~lA~aL~~~----P~lLiLDEPt~gLD~~~r~~l~~~l~~l~------------~~g~tilisSH 230 (340)
T PRK13536 167 DARVSDLSGGMKRRLTLARALIND----PQLLILDEPTTGLDPHARHLIWERLRSLL------------ARGKTILLTTH 230 (340)
T ss_pred CCChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEECC
Confidence 355789999999999999999998 99999999999999999999999999993 34678999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++ .+++|+
T Consensus 231 ~l~e~~~~~d~i~--il~~G~ 249 (340)
T PRK13536 231 FMEEAERLCDRLC--VLEAGR 249 (340)
T ss_pred CHHHHHHhCCEEE--EEECCE
Confidence 96655 5899995 345554
No 131
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.29 E-value=3.1e-12 Score=138.28 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=70.2
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCC-eeEEEEE
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNG-FQSIVIS 1132 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~-~q~i~it 1132 (1154)
.+.++.||||||++++||++|+.. |+++||||||+||||..+..+.++|++++ ..+ ..+|++|
T Consensus 131 ~~~~~~lS~G~kqrl~ia~aL~~~----P~lliLDEPt~GLDp~~~~~~~~~l~~l~------------~~g~~tvliss 194 (293)
T COG1131 131 NKKVRTLSGGMKQRLSIALALLHD----PELLILDEPTSGLDPESRREIWELLRELA------------KEGGVTILLST 194 (293)
T ss_pred CcchhhcCHHHHHHHHHHHHHhcC----CCEEEECCCCcCCCHHHHHHHHHHHHHHH------------hCCCcEEEEeC
Confidence 456889999999999999999999 99999999999999999999999999994 233 6799999
Q ss_pred echhHH-HhccceEEEeecCCC
Q 036401 1133 LKDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1133 ~~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
|..+-+ ..||+++ .+.+|+
T Consensus 195 H~l~e~~~~~d~v~--il~~G~ 214 (293)
T COG1131 195 HILEEAEELCDRVI--ILNDGK 214 (293)
T ss_pred CcHHHHHHhCCEEE--EEeCCE
Confidence 996555 4799884 455554
No 132
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.29 E-value=5e-12 Score=133.62 Aligned_cols=80 Identities=28% Similarity=0.295 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|+++.. ..+..+|+|||+
T Consensus 111 ~~~~~LSgGe~qrv~iaraL~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tiiivsHd 175 (246)
T cd03237 111 REVPELSGGELQRVAIAACLSKD----ADIYLLDEPSAYLDVEQRLMASKVIRRFAE-----------NNEKTAFVVEHD 175 (246)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 45779999999999999999988 999999999999999999999999999831 135779999999
Q ss_pred hhHHH-hccceEEEee
Q 036401 1135 DSFYD-KAEALVGVYR 1149 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~ 1149 (1154)
...+. .||+++-+.-
T Consensus 176 ~~~~~~~~d~i~~l~~ 191 (246)
T cd03237 176 IIMIDYLADRLIVFEG 191 (246)
T ss_pred HHHHHHhCCEEEEEcC
Confidence 77765 8999875543
No 133
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.29 E-value=6.9e-12 Score=132.25 Aligned_cols=80 Identities=28% Similarity=0.316 Sum_probs=71.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 146 ~~~~~LSgG~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tii~~sh~ 208 (226)
T cd03248 146 EKGSQLSGGQKQRVAIARALIRN----PQVLILDEATSALDAESEQQVQQALYDW------------P-ERRTVLVIAHR 208 (226)
T ss_pred cCCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------c-CCCEEEEEECC
Confidence 45789999999999999999987 9999999999999999999999999998 3 35789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||++ +.+++|+
T Consensus 209 ~~~~~~~d~i--~~l~~g~ 225 (226)
T cd03248 209 LSTVERADQI--LVLDGGR 225 (226)
T ss_pred HHHHHhCCEE--EEecCCc
Confidence 8888889998 4556665
No 134
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.29 E-value=3.5e-12 Score=140.15 Aligned_cols=81 Identities=23% Similarity=0.175 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 131 ~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~~~------------~~g~til~~sH~ 194 (303)
T TIGR01288 131 VRVALLSGGMKRRLTLARALIND----PQLLILDEPTTGLDPHARHLIWERLRSLL------------ARGKTILLTTHF 194 (303)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHH------------hCCCEEEEECCC
Confidence 45779999999999999999988 99999999999999999999999999993 346779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 195 ~~~~~~~~d~i~--~l~~G~ 212 (303)
T TIGR01288 195 MEEAERLCDRLC--VLESGR 212 (303)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7666 5899985 445554
No 135
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=1e-12 Score=130.68 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=90.7
Q ss_pred HHHHhhcCCCCCCCceEEEeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccc
Q 036401 1012 IYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVD 1091 (1154)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d 1091 (1154)
+|+.+|+..|..+|-... . ...|..-+...+.. .-..+.|..|||||||+|||+++|.-. |.+++||||.
T Consensus 87 LFpH~tVrgNL~YG~~~~-~----~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt~----P~LLLmDEPL 156 (352)
T COG4148 87 LFPHYTVRGNLRYGMWKS-M----RAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLTA----PELLLMDEPL 156 (352)
T ss_pred cccceEEecchhhhhccc-c----hHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhcC----CCeeeecCch
Confidence 788888888877432221 1 11222222222221 124588999999999999999999988 9999999999
Q ss_pred cccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec-hhHHHhccceEEEeecCCC
Q 036401 1092 AALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK-DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1092 ~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~-~~~~~~~d~~~GV~~~~~~ 1153 (1154)
|.||......++-||..+.. .-+.=+++|||- +++...||++ |.|++|+
T Consensus 157 aSLD~~RK~EilpylERL~~-----------e~~IPIlYVSHS~~Ev~RLAd~v--V~le~Gk 206 (352)
T COG4148 157 ASLDLPRKREILPYLERLRD-----------EINIPILYVSHSLDEVLRLADRV--VVLENGK 206 (352)
T ss_pred hhcccchhhHHHHHHHHHHH-----------hcCCCEEEEecCHHHHHhhhheE--EEecCCe
Confidence 99999999999999999942 135569999998 6788899999 8899986
No 136
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.29 E-value=4.1e-12 Score=133.28 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=70.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 132 ~~~~~LS~G~~qrv~laral~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tii~~tH~ 195 (218)
T cd03266 132 RRVGGFSTGMRQKVAIARALVHD----PPVLLLDEPTTGLDVMATRALREFIRQLR------------ALGKCILFSTHI 195 (218)
T ss_pred hhhhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCcCCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCC
Confidence 45779999999999999999988 99999999999999999999999999983 246789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 196 ~~~~~~~~d~i~~--l~~G~ 213 (218)
T cd03266 196 MQEVERLCDRVVV--LHRGR 213 (218)
T ss_pred HHHHHHhcCEEEE--EECCE
Confidence 7654 58999854 45554
No 137
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=3.9e-12 Score=132.39 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=69.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|..+. ..+..+|+|||+
T Consensus 124 ~~~~~LS~G~~qrl~la~al~~~----p~~lllDEP~~~LD~~~~~~~~~~l~~~~------------~~~~tii~~sH~ 187 (210)
T cd03269 124 KRVEELSKGNQQKVQFIAAVIHD----PELLILDEPFSGLDPVNVELLKDVIRELA------------RAGKTVILSTHQ 187 (210)
T ss_pred CcHhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHH------------HCCCEEEEECCC
Confidence 35679999999999999999988 99999999999999999999999999983 246789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 188 ~~~~~~~~d~i~--~l~~g~ 205 (210)
T cd03269 188 MELVEELCDRVL--LLNKGR 205 (210)
T ss_pred HHHHHHhhhEEE--EEeCCE
Confidence 7665 5899985 445554
No 138
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.29 E-value=4.5e-12 Score=134.78 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=69.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 139 ~~~~~LSgG~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tii~vsH~ 202 (236)
T cd03219 139 RPAGELSYGQQRRLEIARALATD----PKLLLLDEPAAGLNPEETEELAELIRELR------------ERGITVLLVEHD 202 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHH------------HCCCEEEEEecC
Confidence 45789999999999999999987 99999999999999999999999999983 246679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 203 ~~~~~~~~d~i~~--l~~G~ 220 (236)
T cd03219 203 MDVVMSLADRVTV--LDQGR 220 (236)
T ss_pred HHHHHHhCCEEEE--EeCCE
Confidence 7766 57999854 44443
No 139
>PRK10908 cell division protein FtsE; Provisional
Probab=99.29 E-value=5e-12 Score=132.79 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=69.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 133 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sH~ 196 (222)
T PRK10908 133 NFPIQLSGGEQQRVGIARAVVNK----PAVLLADEPTGNLDDALSEGILRLFEEFN------------RVGVTVLMATHD 196 (222)
T ss_pred CCchhCCHHHHHHHHHHHHHHcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCC
Confidence 34679999999999999999988 99999999999999999999999999983 246779999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++- +++|+
T Consensus 197 ~~~~~~~~d~i~~--l~~G~ 214 (222)
T PRK10908 197 IGLISRRSYRMLT--LSDGH 214 (222)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 77665 7999854 45553
No 140
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.29 E-value=5.5e-12 Score=133.12 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=68.0
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
+..|||||+++++||++|+.. ||++||||||++||+.++..+.++|.++ ... ..+|+|||+..
T Consensus 139 ~~~LSgG~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~------------~~~-~tii~~sH~~~ 201 (227)
T cd03260 139 ALGLSGGQQQRLCLARALANE----PEVLLLDEPTSALDPISTAKIEELIAEL------------KKE-YTIVIVTHNMQ 201 (227)
T ss_pred cccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHH------------hhC-cEEEEEeccHH
Confidence 579999999999999999988 9999999999999999999999999999 323 78999999976
Q ss_pred HH-HhccceEEEeecCCC
Q 036401 1137 FY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~-~~~d~~~GV~~~~~~ 1153 (1154)
.+ ..||+++- +.+|+
T Consensus 202 ~~~~~~d~i~~--l~~G~ 217 (227)
T cd03260 202 QAARVADRTAF--LLNGR 217 (227)
T ss_pred HHHHhCCEEEE--EeCCE
Confidence 65 58999854 44553
No 141
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.28 E-value=4.9e-12 Score=134.11 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=69.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 129 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~~~~~l~~~~------------~~~~tii~~sH~ 192 (232)
T cd03218 129 SKASSLSGGERRRVEIARALATN----PKFLLLDEPFAGVDPIAVQDIQKIIKILK------------DRGIGVLITDHN 192 (232)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCcccCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCC
Confidence 45679999999999999999998 99999999999999999999999999983 246679999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. +...||+++ .+++|+
T Consensus 193 ~~~~~~~~d~i~--~l~~G~ 210 (232)
T cd03218 193 VRETLSITDRAY--IIYEGK 210 (232)
T ss_pred HHHHHHhCCEEE--EEECCe
Confidence 74 556899984 445554
No 142
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.28 E-value=5.9e-12 Score=124.33 Aligned_cols=77 Identities=29% Similarity=0.351 Sum_probs=66.9
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHH
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFY 1138 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~ 1138 (1154)
+|||||+++++||++|+.. ||+++||||+++||+.++..+.++|.++. ..+..+|++||+...+
T Consensus 82 qLS~G~~qrl~laral~~~----p~illlDEP~~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sh~~~~~ 145 (163)
T cd03216 82 QLSVGERQMVEIARALARN----ARLLILDEPTAALTPAEVERLFKVIRRLR------------AQGVAVIFISHRLDEV 145 (163)
T ss_pred ecCHHHHHHHHHHHHHhcC----CCEEEEECCCcCCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCCHHHH
Confidence 3999999999999999988 99999999999999999999999999983 2467899999997654
Q ss_pred -HhccceEEEeecCCC
Q 036401 1139 -DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1139 -~~~d~~~GV~~~~~~ 1153 (1154)
..||+++-+ .+|+
T Consensus 146 ~~~~d~~~~l--~~g~ 159 (163)
T cd03216 146 FEIADRVTVL--RDGR 159 (163)
T ss_pred HHhCCEEEEE--ECCE
Confidence 689999544 5553
No 143
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.28 E-value=4.3e-12 Score=134.32 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=70.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||+++|||||++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tii~~sH~ 205 (228)
T cd03257 141 RYPHELSGGQRQRVAIARALALN----PKLLIADEPTSALDVSVQAQILDLLKKLQE-----------ELGLTLLFITHD 205 (228)
T ss_pred CCchhcCHHHHHHHHHHHHHhcC----CCEEEecCCCCCCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEeCC
Confidence 45678999999999999999987 999999999999999999999999999831 126789999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++ .+++|+
T Consensus 206 ~~~~~~~~d~i~--~l~~G~ 223 (228)
T cd03257 206 LGVVAKIADRVA--VMYAGK 223 (228)
T ss_pred HHHHHHhcCeEE--EEeCCE
Confidence 87765 899995 455664
No 144
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=5.1e-12 Score=131.67 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |++++|||||++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 126 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tii~vsH~ 188 (211)
T cd03264 126 KKIGSLSGGMRRRVGIAQALVGD----PSILIVDEPTAGLDPEERIRFRNLLSEL------------G-EDRIVILSTHI 188 (211)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHH------------h-CCCEEEEEcCC
Confidence 35679999999999999999988 9999999999999999999999999999 3 24789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 189 ~~~~~~~~d~i~--~l~~g~ 206 (211)
T cd03264 189 VEDVESLCNQVA--VLNKGK 206 (211)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7766 5899984 456664
No 145
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.28 E-value=2.6e-12 Score=138.01 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=77.6
Q ss_pred CCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEE
Q 036401 1050 PTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSI 1129 (1154)
Q Consensus 1050 ~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i 1129 (1154)
.+...+.+++|||||+||+|||++|+.. |++++||||.++||..-|..+..-|+.+.+ ..+..||
T Consensus 127 ~~~~~R~p~qLSGGQqQRVALARAL~~~----P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~-----------~~giT~i 191 (352)
T COG3842 127 EGFADRKPHQLSGGQQQRVALARALVPE----PKVLLLDEPLSALDAKLREQMRKELKELQR-----------ELGITFV 191 (352)
T ss_pred hhhhhhChhhhChHHHHHHHHHHHhhcC----cchhhhcCcccchhHHHHHHHHHHHHHHHH-----------hcCCeEE
Confidence 3456689999999999999999999999 999999999999999999999999999952 2477799
Q ss_pred EEEec-hhHHHhccceEEEeecCCC
Q 036401 1130 VISLK-DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1130 ~it~~-~~~~~~~d~~~GV~~~~~~ 1153 (1154)
+|||+ .+.+.++|++ +-|++|+
T Consensus 192 ~VTHDqeEAl~msDrI--~Vm~~G~ 214 (352)
T COG3842 192 YVTHDQEEALAMSDRI--AVMNDGR 214 (352)
T ss_pred EEECCHHHHhhhccce--EEccCCc
Confidence 99998 7888899999 6788886
No 146
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=4.6e-12 Score=137.78 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=70.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||.+|+.. |+++||||||++||+.++..+.++|.++.+ ..+.++|+|||+
T Consensus 140 ~~~~~LSgGq~qrv~iAraL~~~----P~llllDEPt~gLD~~~~~~l~~~l~~l~~-----------~~g~tvi~vtHd 204 (287)
T PRK13637 140 KSPFELSGGQKRRVAIAGVVAME----PKILILDEPTAGLDPKGRDEILNKIKELHK-----------EYNMTIILVSHS 204 (287)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEECCccCCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 55789999999999999999998 999999999999999999999999999931 136789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++-+ .+|+
T Consensus 205 ~~~~~~~~drv~~l--~~G~ 222 (287)
T PRK13637 205 MEDVAKLADRIIVM--NKGK 222 (287)
T ss_pred HHHHHHhCCEEEEE--ECCE
Confidence 7665 689999544 4453
No 147
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.28 E-value=5.1e-12 Score=134.03 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=70.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 128 ~~~~~LS~G~~qrl~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~-----------~~~~tiii~sH~ 192 (236)
T TIGR03864 128 DKVRELNGGHRRRVEIARALLHR----PALLLLDEPTVGLDPASRAAIVAHVRALCR-----------DQGLSVLWATHL 192 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCccCCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEecC
Confidence 45679999999999999999988 999999999999999999999999999831 135679999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++- +++|+
T Consensus 193 ~~~~~~~d~i~~--l~~G~ 209 (236)
T TIGR03864 193 VDEIEADDRLVV--LHRGR 209 (236)
T ss_pred hhhHhhCCEEEE--EeCCe
Confidence 887778999954 45554
No 148
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.28 E-value=9.5e-12 Score=132.96 Aligned_cols=86 Identities=37% Similarity=0.649 Sum_probs=77.4
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
...+..|||||+++++||++|++....|||+++||||+++||+..+..+.+.|.++ . .++++|++||
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~------------~-~~~~ii~~~h 219 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL------------S-DGAQFITTTF 219 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH------------h-CCCEEEEEec
Confidence 35688999999999999999997656689999999999999999999999999998 3 3678999999
Q ss_pred chhHHHhccceEEEeecCC
Q 036401 1134 KDSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1134 ~~~~~~~~d~~~GV~~~~~ 1152 (1154)
...++..||+++.+.-++|
T Consensus 220 ~~~~~~~~d~i~~l~~~~~ 238 (243)
T cd03272 220 RPELLEVADKFYGVKFRNK 238 (243)
T ss_pred CHHHHhhCCEEEEEEEECC
Confidence 9999999999999987775
No 149
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.28 E-value=5.8e-12 Score=132.29 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=73.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 133 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tvii~sh~ 197 (225)
T PRK10247 133 KNIAELSGGEKQRISLIRNLQFM----PKVLLLDEITSALDESNKHNVNEIIHRYVR-----------EQNIAVLWVTHD 197 (225)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEECC
Confidence 45779999999999999999988 999999999999999999999999999831 136679999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++-+.++.|+
T Consensus 198 ~~~~~~~d~i~~l~~~~~~ 216 (225)
T PRK10247 198 KDEINHADKVITLQPHAGE 216 (225)
T ss_pred hHHHHhCCEEEEEecccch
Confidence 8888889999888766665
No 150
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.28 E-value=5.3e-12 Score=132.91 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||+++||||+++||+.++..+.++|.++. ..+.++|+|||+
T Consensus 128 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sH~ 191 (222)
T cd03224 128 QLAGTLSGGEQQMLAIARALMSR----PKLLLLDEPSEGLAPKIVEEIFEAIRELR------------DEGVTILLVEQN 191 (222)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCEEEECCCcccCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCC
Confidence 45678999999999999999987 99999999999999999999999999983 246789999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++ .+.+|+
T Consensus 192 ~~~~~~~~d~i~--~l~~G~ 209 (222)
T cd03224 192 ARFALEIADRAY--VLERGR 209 (222)
T ss_pred HHHHHHhccEEE--EeeCCe
Confidence 776 46899985 445554
No 151
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=4.7e-12 Score=140.29 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=71.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+..+..+.++|.++.. ..+..+|||||+
T Consensus 154 ~~p~~LSgG~~QRv~iArAL~~~----P~llilDEPts~LD~~~~~~i~~lL~~l~~-----------~~g~tii~itHd 218 (330)
T PRK15093 154 SFPYELTEGECQKVMIAIALANQ----PRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-----------NNNTTILLISHD 218 (330)
T ss_pred CCchhCCHHHHHHHHHHHHHHCC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEECC
Confidence 56789999999999999999999 999999999999999999999999999931 136779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ .+||++ +.|+.|+
T Consensus 219 l~~v~~~~dri--~vm~~G~ 236 (330)
T PRK15093 219 LQMLSQWADKI--NVLYCGQ 236 (330)
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 7777 589999 4566664
No 152
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.28 E-value=4.9e-12 Score=133.62 Aligned_cols=82 Identities=23% Similarity=0.240 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 142 ~~~~~LS~Ge~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tii~~sH~ 206 (228)
T PRK10584 142 HLPAQLSGGEQQRVALARAFNGR----PDVLFADEPTGNLDRQTGDKIADLLFSLNR-----------EHGTTLILVTHD 206 (228)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEecC
Confidence 34678999999999999999987 999999999999999999999999999831 135679999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+.+|+
T Consensus 207 ~~~~~~~d~i~--~l~~g~ 223 (228)
T PRK10584 207 LQLAARCDRRL--RLVNGQ 223 (228)
T ss_pred HHHHHhCCEEE--EEECCE
Confidence 88888899884 345553
No 153
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=5.3e-12 Score=133.60 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 141 ~~~~~LSgG~~qrl~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-----------~~g~tvii~sH~ 205 (233)
T PRK11629 141 HRPSELSGGERQRVAIARALVNN----PRLVLADEPTGNLDARNADSIFQLLGELNR-----------LQGTAFLVVTHD 205 (233)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEeCC
Confidence 34678999999999999999988 999999999999999999999999999831 136789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..+|++ +.+.+|+
T Consensus 206 ~~~~~~~~~~--~~l~~G~ 222 (233)
T PRK11629 206 LQLAKRMSRQ--LEMRDGR 222 (233)
T ss_pred HHHHHhhCEE--EEEECCE
Confidence 8888877766 4566664
No 154
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.28 E-value=5e-12 Score=141.04 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=71.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++||||+++||+..+..+...|+.+.+ ..+..+|+|||+
T Consensus 140 ~~p~~LSgGq~QRVaLARaL~~~----P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-----------~~g~tiI~vTHd 204 (375)
T PRK09452 140 RKPHQLSGGQQQRVAIARAVVNK----PKVLLLDESLSALDYKLRKQMQNELKALQR-----------KLGITFVFVTHD 204 (375)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 56789999999999999999998 999999999999999999999999999841 136789999999
Q ss_pred h-hHHHhccceEEEeecCCC
Q 036401 1135 D-SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~-~~~~~~d~~~GV~~~~~~ 1153 (1154)
. +.+.+||++ +.|.+|+
T Consensus 205 ~~ea~~laDri--~vl~~G~ 222 (375)
T PRK09452 205 QEEALTMSDRI--VVMRDGR 222 (375)
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 5 457799999 5566765
No 155
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=5.5e-12 Score=132.29 Aligned_cols=82 Identities=20% Similarity=0.187 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 127 ~~~~~LS~G~~qr~~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tvi~~tH~ 191 (220)
T cd03265 127 RLVKTYSGGMRRRLEIARSLVHR----PEVLFLDEPTIGLDPQTRAHVWEYIEKLKE-----------EFGMTILLTTHY 191 (220)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCccCCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 45679999999999999999988 999999999999999999999999999831 125679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 192 ~~~~~~~~d~i~--~l~~G~ 209 (220)
T cd03265 192 MEEAEQLCDRVA--IIDHGR 209 (220)
T ss_pred HHHHHHhCCEEE--EEeCCE
Confidence 7665 5899985 345554
No 156
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.27 E-value=7.9e-12 Score=132.91 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=70.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..||||||++++||++|+.. |++++||||+++||+.++..+.++|.++ . .+..+|++||+
T Consensus 134 ~~~~~LSgG~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tiii~sH~ 196 (237)
T cd03252 134 EQGAGLSGGQRQRIAIARALIHN----PRILIFDEATSALDYESEHAIMRNMHDI------------C-AGRTVIIIAHR 196 (237)
T ss_pred cCCCcCCHHHHHHHHHHHHHhhC----CCEEEEeCCcccCCHHHHHHHHHHHHHh------------c-CCCEEEEEeCC
Confidence 45789999999999999999987 9999999999999999999999999999 3 36779999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+++|+
T Consensus 197 ~~~~~~~d~v~--~l~~G~ 213 (237)
T cd03252 197 LSTVKNADRII--VMEKGR 213 (237)
T ss_pred HHHHHhCCEEE--EEECCE
Confidence 88888899984 455553
No 157
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=4.8e-12 Score=140.85 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=70.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 136 ~~~~~LSgGq~qRv~lAraL~~~----p~iLlLDEPts~LD~~~~~~l~~~L~~l~~-----------~~g~tiilvtH~ 200 (343)
T PRK11153 136 RYPAQLSGGQKQRVAIARALASN----PKVLLCDEATSALDPATTRSILELLKDINR-----------ELGLTIVLITHE 200 (343)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 45679999999999999999988 999999999999999999999999999831 126679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 201 ~~~i~~~~d~v~--~l~~G~ 218 (343)
T PRK11153 201 MDVVKRICDRVA--VIDAGR 218 (343)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7765 5799984 455554
No 158
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=5.4e-12 Score=131.68 Aligned_cols=82 Identities=27% Similarity=0.240 Sum_probs=69.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||.+|+.. |+++||||||++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 127 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tiii~sH~ 191 (214)
T cd03297 127 RYPAQLSGGEKQRVALARALAAQ----PELLLLDEPFSALDRALRLQLLPELKQIKK-----------NLNIPVIFVTHD 191 (214)
T ss_pred cCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-----------HcCcEEEEEecC
Confidence 35679999999999999999988 999999999999999999999999999831 125679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 192 ~~~~~~~~d~i~--~l~~G~ 209 (214)
T cd03297 192 LSEAEYLADRIV--VMEDGR 209 (214)
T ss_pred HHHHHHhcCEEE--EEECCE
Confidence 7766 5899984 455664
No 159
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.27 E-value=7.9e-12 Score=130.67 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=68.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCC-CCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKP-SPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p-~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.++..|||||+++++||.+|+.. | |+++|||||+++||+.++..+.++|..+. ..+..+|+|||
T Consensus 133 ~~~~~LSgG~~qrv~laral~~~---p~~~llllDEPt~gLD~~~~~~l~~~l~~~~------------~~g~tii~itH 197 (226)
T cd03270 133 RSAPTLSGGEAQRIRLATQIGSG---LTGVLYVLDEPSIGLHPRDNDRLIETLKRLR------------DLGNTVLVVEH 197 (226)
T ss_pred CccCcCCHHHHHHHHHHHHHHhC---CCCCEEEEeCCccCCCHHHHHHHHHHHHHHH------------hCCCEEEEEEe
Confidence 56789999999999999999976 3 25999999999999999999999999983 24667999999
Q ss_pred chhHHHhccceEEE
Q 036401 1134 KDSFYDKAEALVGV 1147 (1154)
Q Consensus 1134 ~~~~~~~~d~~~GV 1147 (1154)
+...+..||+++-+
T Consensus 198 ~~~~~~~~d~i~~l 211 (226)
T cd03270 198 DEDTIRAADHVIDI 211 (226)
T ss_pred CHHHHHhCCEEEEe
Confidence 98888899999544
No 160
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.27 E-value=1e-11 Score=122.99 Aligned_cols=73 Identities=25% Similarity=0.380 Sum_probs=66.2
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
.+..|||||+++++||.+++.. ||+++||||+++||+.++..+.++|.++ +..+|+|||+.
T Consensus 88 ~~~~LS~G~~~rv~laral~~~----p~~lllDEPt~~LD~~~~~~l~~~l~~~---------------~~tiiivsh~~ 148 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHK----PKFVFLDEATSALDEESEDRLYQLLKEL---------------GITVISVGHRP 148 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcC----CCEEEEECCccccCHHHHHHHHHHHHHh---------------CCEEEEEeCCh
Confidence 4678999999999999999987 9999999999999999999999999987 25699999998
Q ss_pred hHHHhccceEEE
Q 036401 1136 SFYDKAEALVGV 1147 (1154)
Q Consensus 1136 ~~~~~~d~~~GV 1147 (1154)
.....||+++-+
T Consensus 149 ~~~~~~d~i~~l 160 (166)
T cd03223 149 SLWKFHDRVLDL 160 (166)
T ss_pred hHHhhCCEEEEE
Confidence 888899998643
No 161
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.27 E-value=8.9e-12 Score=125.61 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=69.7
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
+..|||||+++++||++|+.. |+++|||||+++||+..+..+.++|.++ . .+..+|++||+..
T Consensus 96 ~~~LS~G~~qrv~laral~~~----p~~lllDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tii~~sh~~~ 158 (178)
T cd03247 96 GRRFSGGERQRLALARILLQD----APIVLLDEPTVGLDPITERQLLSLIFEV------------L-KDKTLIWITHHLT 158 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcC----CCEEEEECCcccCCHHHHHHHHHHHHHH------------c-CCCEEEEEecCHH
Confidence 678999999999999999988 9999999999999999999999999998 3 4678999999988
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
.+..||+++ .+.+|+
T Consensus 159 ~~~~~d~~~--~l~~g~ 173 (178)
T cd03247 159 GIEHMDKIL--FLENGK 173 (178)
T ss_pred HHHhCCEEE--EEECCE
Confidence 888899884 455554
No 162
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.27 E-value=5.9e-12 Score=134.65 Aligned_cols=80 Identities=21% Similarity=0.230 Sum_probs=68.4
Q ss_pred ccc-cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1056 DME-QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1056 ~~~-~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.+. .||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 140 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tvi~vsH~ 203 (243)
T TIGR01978 140 SVNEGFSGGEKKRNEILQMALLE----PKLAILDEIDSGLDIDALKIVAEGINRLR------------EPDRSFLIITHY 203 (243)
T ss_pred ccccCcCHHHHHHHHHHHHHhcC----CCEEEecCCcccCCHHHHHHHHHHHHHHH------------HCCcEEEEEEec
Confidence 344 5999999999999999987 99999999999999999999999999993 246779999999
Q ss_pred hhHHH-h-ccceEEEeecCCC
Q 036401 1135 DSFYD-K-AEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~-~d~~~GV~~~~~~ 1153 (1154)
...+. . ||+++ .+++|+
T Consensus 204 ~~~~~~~~~d~i~--~l~~G~ 222 (243)
T TIGR01978 204 QRLLNYIKPDYVH--VLLDGR 222 (243)
T ss_pred HHHHHhhcCCeEE--EEeCCE
Confidence 88776 4 79985 455554
No 163
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.27 E-value=5.5e-12 Score=139.13 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=71.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+++|||||+++++||++|+.. |+++|+||||++||+.++..+.++|.++.. ..+..+|||||+
T Consensus 157 ~~p~~LSgG~~QRv~IArAL~~~----P~llilDEPts~LD~~~~~~i~~lL~~l~~-----------~~g~til~iTHd 221 (330)
T PRK09473 157 MYPHEFSGGMRQRVMIAMALLCR----PKLLIADEPTTALDVTVQAQIMTLLNELKR-----------EFNTAIIMITHD 221 (330)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEECC
Confidence 46789999999999999999999 999999999999999999999999999931 136779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ .+||+++ .|+.|+
T Consensus 222 l~~~~~~~Dri~--vm~~G~ 239 (330)
T PRK09473 222 LGVVAGICDKVL--VMYAGR 239 (330)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7776 4899995 455654
No 164
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=4.9e-12 Score=138.22 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=70.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++|||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 146 ~~~~~LS~Gq~qrv~laral~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tiiiisH~ 210 (289)
T PRK13645 146 RSPFELSGGQKRRVALAGIIAMD----GNTLVLDEPTGGLDPKGEEDFINLFERLNK-----------EYKKRIIMVTHN 210 (289)
T ss_pred CChhhCCHHHHHHHHHHHHHHhC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEecC
Confidence 45789999999999999999998 999999999999999999999999999831 136789999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++ .+++|+
T Consensus 211 ~~~~~~~~d~i~--~l~~G~ 228 (289)
T PRK13645 211 MDQVLRIADEVI--VMHEGK 228 (289)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 765 46899984 445554
No 165
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=5.5e-12 Score=134.08 Aligned_cols=82 Identities=23% Similarity=0.290 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 132 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~-----------~~~~tvii~sH~ 196 (239)
T cd03296 132 RYPAQLSGGQRQRVALARALAVE----PKVLLLDEPFGALDAKVRKELRRWLRRLHD-----------ELHVTTVFVTHD 196 (239)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEeCC
Confidence 45679999999999999999998 999999999999999999999999999831 125679999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++- +++|+
T Consensus 197 ~~~~~~~~d~i~~--l~~G~ 214 (239)
T cd03296 197 QEEALEVADRVVV--MNKGR 214 (239)
T ss_pred HHHHHHhCCEEEE--EECCe
Confidence 765 568999854 45553
No 166
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=6.4e-12 Score=133.51 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=69.2
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
.+..|||||+++++||++|+.. ||++||||||++||+.++..+.++|.++. ..+..+|+|||+.
T Consensus 134 ~~~~LS~G~~qrl~la~al~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sH~~ 197 (237)
T PRK11614 134 RAGTMSGGEQQMLAIGRALMSQ----PRLLLLDEPSLGLAPIIIQQIFDTIEQLR------------EQGMTIFLVEQNA 197 (237)
T ss_pred chhhCCHHHHHHHHHHHHHHhC----CCEEEEcCccccCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCcH
Confidence 4668999999999999999998 99999999999999999999999999983 3467799999996
Q ss_pred h-HHHhccceEEEeecCCC
Q 036401 1136 S-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~-~~~~~d~~~GV~~~~~~ 1153 (1154)
. +...||+++- +++|+
T Consensus 198 ~~~~~~~d~i~~--l~~G~ 214 (237)
T PRK11614 198 NQALKLADRGYV--LENGH 214 (237)
T ss_pred HHHHhhCCEEEE--EeCCE
Confidence 5 6679999954 34443
No 167
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.27 E-value=5.7e-12 Score=134.70 Aligned_cols=82 Identities=22% Similarity=0.335 Sum_probs=69.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 141 ~~~~~LSgG~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tiii~tH~ 205 (243)
T TIGR02315 141 QRADQLSGGQQQRVAIARALAQQ----PDLILADEPIASLDPKTSKQVMDYLKRINK-----------EDGITVIINLHQ 205 (243)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEeCC
Confidence 45779999999999999999988 999999999999999999999999999831 125679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +++|+
T Consensus 206 ~~~~~~~~d~v~~--l~~G~ 223 (243)
T TIGR02315 206 VDLAKKYADRIVG--LKAGE 223 (243)
T ss_pred HHHHHHhcCeEEE--EECCE
Confidence 7776 58999854 45554
No 168
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=7.1e-12 Score=133.87 Aligned_cols=79 Identities=24% Similarity=0.234 Sum_probs=68.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 124 ~~~~~LSgGq~qrl~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-----------~~g~tviivsH~ 188 (255)
T PRK11248 124 RYIWQLSGGQRQRVGIARALAAN----PQLLLLDEPFGALDAFTREQMQTLLLKLWQ-----------ETGKQVLLITHD 188 (255)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 35679999999999999999987 999999999999999999999999999821 135679999999
Q ss_pred hhHH-HhccceEEEe
Q 036401 1135 DSFY-DKAEALVGVY 1148 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~ 1148 (1154)
...+ ..||+++-+.
T Consensus 189 ~~~~~~~~d~i~~l~ 203 (255)
T PRK11248 189 IEEAVFMATELVLLS 203 (255)
T ss_pred HHHHHHhCCEEEEEe
Confidence 7665 5899986553
No 169
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=6.8e-12 Score=135.63 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=70.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||.+|+.. |+++|||||+++||+.++..+.++|..+. ..+..+|+|||+
T Consensus 134 ~~~~~LSgG~~qrv~laraL~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~g~tili~tH~ 197 (274)
T PRK13647 134 KPPYHLSYGQKKRVAIAGVLAMD----PDVIVLDEPMAYLDPRGQETLMEILDRLH------------NQGKTVIVATHD 197 (274)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEECCCcCCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCC
Confidence 45679999999999999999998 99999999999999999999999999993 236789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 198 ~~~~~~~~d~i~--~l~~G~ 215 (274)
T PRK13647 198 VDLAAEWADQVI--VLKEGR 215 (274)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 8766 6899985 345554
No 170
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.27 E-value=6.5e-12 Score=133.70 Aligned_cols=78 Identities=27% Similarity=0.286 Sum_probs=67.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 129 ~~~~~LSgGqkqrl~laraL~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-----------~~~~tviivsHd 193 (257)
T PRK11247 129 EWPAALSGGQKQRVALARALIHR----PGLLLLDEPLGALDALTRIEMQDLIESLWQ-----------QHGFTVLLVTHD 193 (257)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEeCC
Confidence 45679999999999999999988 999999999999999999999999998831 135679999999
Q ss_pred hhHH-HhccceEEE
Q 036401 1135 DSFY-DKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV 1147 (1154)
...+ ..||+++-+
T Consensus 194 ~~~~~~~~d~i~~l 207 (257)
T PRK11247 194 VSEAVAMADRVLLI 207 (257)
T ss_pred HHHHHHhCCEEEEE
Confidence 7765 589998543
No 171
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.27 E-value=8.8e-12 Score=132.63 Aligned_cols=80 Identities=26% Similarity=0.290 Sum_probs=70.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++++.. |+++|||||+++||+.++..+.++|.++ . .+..+|++||+
T Consensus 135 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEP~~gLD~~~~~~l~~~l~~~------------~-~g~~vi~~sh~ 197 (238)
T cd03249 135 ERGSQLSGGQKQRIAIARALLRN----PKILLLDEATSALDAESEKLVQEALDRA------------M-KGRTTIVIAHR 197 (238)
T ss_pred cCCccCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHh------------c-CCCEEEEEeCC
Confidence 45679999999999999999988 9999999999999999999999999998 3 46779999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+++|+
T Consensus 198 ~~~~~~~d~v~--~l~~G~ 214 (238)
T cd03249 198 LSTIRNADLIA--VLQNGQ 214 (238)
T ss_pred HHHHhhCCEEE--EEECCE
Confidence 87778999984 455554
No 172
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=6.4e-12 Score=130.93 Aligned_cols=82 Identities=27% Similarity=0.332 Sum_probs=69.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 124 ~~~~~LS~G~~qrv~ia~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~-----------~~~~tii~~sH~ 188 (211)
T cd03298 124 RLPGELSGGERQRVALARVLVRD----KPVLLLDEPFAALDPALRAEMLDLVLDLHA-----------ETKMTVLMVTHQ 188 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEecC
Confidence 34669999999999999999987 999999999999999999999999999831 136779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
.... ..||+++ .+++|+
T Consensus 189 ~~~~~~~~d~i~--~l~~G~ 206 (211)
T cd03298 189 PEDAKRLAQRVV--FLDNGR 206 (211)
T ss_pred HHHHHhhhCEEE--EEECCE
Confidence 7766 5799984 455554
No 173
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=6.1e-12 Score=139.43 Aligned_cols=82 Identities=18% Similarity=0.273 Sum_probs=71.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++||||+++||+..+..+...|+.+.+ ..+..+|+|||+
T Consensus 132 r~~~~LSgGq~QRVaLARaL~~~----P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-----------~~g~tii~vTHd 196 (351)
T PRK11432 132 RYVDQISGGQQQRVALARALILK----PKVLLFDEPLSNLDANLRRSMREKIRELQQ-----------QFNITSLYVTHD 196 (351)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEcCC
Confidence 55789999999999999999998 999999999999999999999999999841 136779999999
Q ss_pred h-hHHHhccceEEEeecCCC
Q 036401 1135 D-SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~-~~~~~~d~~~GV~~~~~~ 1153 (1154)
. +.+.+||++ +.|++|+
T Consensus 197 ~~e~~~laD~i--~vm~~G~ 214 (351)
T PRK11432 197 QSEAFAVSDTV--IVMNKGK 214 (351)
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 5 556899999 5566664
No 174
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=6.8e-12 Score=136.05 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=71.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||.+|+.. |+++||||||++||+.++..+.++|.++.. ..+.++|+|||+
T Consensus 136 ~~~~~LSgGq~qrv~lAral~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-----------~~g~tilivtH~ 200 (279)
T PRK13650 136 REPARLSGGQKQRVAIAGAVAMR----PKIIILDEATSMLDPEGRLELIKTIKGIRD-----------DYQMTVISITHD 200 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEecC
Confidence 45679999999999999999998 999999999999999999999999999831 136789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+.+|+
T Consensus 201 ~~~~~~~dri~--~l~~G~ 217 (279)
T PRK13650 201 LDEVALSDRVL--VMKNGQ 217 (279)
T ss_pred HHHHHhCCEEE--EEECCE
Confidence 87778999984 445554
No 175
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.27 E-value=7.5e-12 Score=134.30 Aligned_cols=81 Identities=26% Similarity=0.370 Sum_probs=69.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 140 ~~~~~LS~Gq~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tvi~~tH~ 203 (250)
T PRK11264 140 SYPRRLSGGQQQRVAIARALAMR----PEVILFDEPTSALDPELVGEVLNTIRQLA------------QEKRTMVIVTHE 203 (250)
T ss_pred CChhhCChHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHH------------hcCCEEEEEeCC
Confidence 45789999999999999999988 99999999999999999999999999983 246679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 204 ~~~~~~~~d~i~--~l~~G~ 221 (250)
T PRK11264 204 MSFARDVADRAI--FMDQGR 221 (250)
T ss_pred HHHHHHhcCEEE--EEECCE
Confidence 7666 5899985 344553
No 176
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=8.1e-12 Score=136.07 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=70.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++|||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 141 ~~~~~LSgGq~qrl~laral~~~----p~lLlLDEPt~gLD~~~~~~l~~~l~~l~------------~~g~tvlivsH~ 204 (287)
T PRK13641 141 KSPFELSGGQMRRVAIAGVMAYE----PEILCLDEPAAGLDPEGRKEMMQLFKDYQ------------KAGHTVILVTHN 204 (287)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEEeCC
Confidence 45779999999999999999998 99999999999999999999999999993 246789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++-+ ++|+
T Consensus 205 ~~~~~~~~d~v~~l--~~G~ 222 (287)
T PRK13641 205 MDDVAEYADDVLVL--EHGK 222 (287)
T ss_pred HHHHHHhCCEEEEE--ECCE
Confidence 7765 689999543 4443
No 177
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.26 E-value=8.4e-12 Score=126.19 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=66.8
Q ss_pred CchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHH-
Q 036401 1060 LSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFY- 1138 (1154)
Q Consensus 1060 lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~- 1138 (1154)
|||||+++++||++++.. ||+++||||+++||+.++..+.++|.++. ..+.++|++||+...+
T Consensus 105 LS~G~~qrl~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sh~~~~~~ 168 (182)
T cd03215 105 LSGGNQQKVVLARWLARD----PRVLILDEPTRGVDVGAKAEIYRLIRELA------------DAGKAVLLISSELDELL 168 (182)
T ss_pred cCHHHHHHHHHHHHHccC----CCEEEECCCCcCCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCCHHHHH
Confidence 999999999999999998 99999999999999999999999999983 2467899999997655
Q ss_pred HhccceEEEeecCCC
Q 036401 1139 DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1139 ~~~d~~~GV~~~~~~ 1153 (1154)
..||+++ .+++|+
T Consensus 169 ~~~d~v~--~l~~G~ 181 (182)
T cd03215 169 GLCDRIL--VMYEGR 181 (182)
T ss_pred HhCCEEE--EecCCc
Confidence 5799984 456665
No 178
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.26 E-value=7.4e-12 Score=134.28 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=67.1
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHH
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFY 1138 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~ 1138 (1154)
.|||||+++++||++|+.. |++++|||||++||+..+..+.++|..+. ..+..+|+|||+...+
T Consensus 145 ~LS~G~~qrv~laral~~~----p~illLDEPt~~LD~~~~~~l~~~l~~l~------------~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLE----PELCILDESDSGLDIDALKIVADGVNSLR------------DGKRSFIIVTHYQRIL 208 (248)
T ss_pred CCCHHHHHHHHHHHHHHcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHH------------hCCCEEEEEeCCHHHH
Confidence 7999999999999999988 99999999999999999999999999983 2457799999998887
Q ss_pred Hh--ccceEEEeecCCC
Q 036401 1139 DK--AEALVGVYRDSDR 1153 (1154)
Q Consensus 1139 ~~--~d~~~GV~~~~~~ 1153 (1154)
.. ||+++ .+.+|+
T Consensus 209 ~~~~~d~i~--~l~~g~ 223 (248)
T PRK09580 209 DYIKPDYVH--VLYQGR 223 (248)
T ss_pred HhhhCCEEE--EEECCe
Confidence 74 79874 345553
No 179
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=8e-12 Score=135.26 Aligned_cols=81 Identities=22% Similarity=0.310 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 132 ~~~~~LSgG~~qrl~laraL~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~------------~~g~tii~vtH~ 195 (271)
T PRK13638 132 QPIQCLSHGQKKRVAIAGALVLQ----ARYLLLDEPTAGLDPAGRTQMIAIIRRIV------------AQGNHVIISSHD 195 (271)
T ss_pred CCchhCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCC
Confidence 45779999999999999999988 99999999999999999999999999983 235679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 196 ~~~~~~~~d~i~~--l~~G~ 213 (271)
T PRK13638 196 IDLIYEISDAVYV--LRQGQ 213 (271)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 7766 58999964 34443
No 180
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.26 E-value=6.6e-12 Score=139.50 Aligned_cols=83 Identities=25% Similarity=0.302 Sum_probs=71.4
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..|||||+++++||++|+.. |++++||||+++||+.++..+.+.|.++.+ ..+.++|+|||
T Consensus 131 ~~~~~~LSgGq~QRvalArAL~~~----P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-----------~~g~tii~vTH 195 (353)
T PRK10851 131 DRYPAQLSGGQKQRVALARALAVE----PQILLLDEPFGALDAQVRKELRRWLRQLHE-----------ELKFTSVFVTH 195 (353)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeC
Confidence 356789999999999999999988 999999999999999999999999999841 13678999999
Q ss_pred chh-HHHhccceEEEeecCCC
Q 036401 1134 KDS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
+.. .+..||++ +.|.+|+
T Consensus 196 d~~ea~~~~Dri--~vl~~G~ 214 (353)
T PRK10851 196 DQEEAMEVADRV--VVMSQGN 214 (353)
T ss_pred CHHHHHHhCCEE--EEEECCE
Confidence 965 56799999 4566664
No 181
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.26 E-value=8.7e-12 Score=134.07 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+.++|+|||+
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~l~------------~~g~tiiivsH~ 211 (257)
T PRK10619 148 KYPVHLSGGQQQRVSIARALAME----PEVLLFDEPTSALDPELVGEVLRIMQQLA------------EEGKTMVVVTHE 211 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------hcCCEEEEEeCC
Confidence 45779999999999999999998 99999999999999999999999999993 346789999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++- +++|+
T Consensus 212 ~~~~~~~~d~i~~--l~~G~ 229 (257)
T PRK10619 212 MGFARHVSSHVIF--LHQGK 229 (257)
T ss_pred HHHHHHhcCEEEE--EECCE
Confidence 77765 7999954 44453
No 182
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=1.3e-11 Score=123.43 Aligned_cols=75 Identities=32% Similarity=0.401 Sum_probs=66.7
Q ss_pred CchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHH
Q 036401 1060 LSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYD 1139 (1154)
Q Consensus 1060 lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~ 1139 (1154)
|||||+++++||++++.. |++++||||+++||+.++..+.++|.++ . .+..+|++||+...+.
T Consensus 97 LS~G~~~rl~la~al~~~----p~llllDEP~~gLD~~~~~~l~~~l~~~------------~-~~~tii~~sh~~~~~~ 159 (171)
T cd03228 97 LSGGQRQRIAIARALLRD----PPILILDEATSALDPETEALILEALRAL------------A-KGKTVIVIAHRLSTIR 159 (171)
T ss_pred hCHHHHHHHHHHHHHhcC----CCEEEEECCCcCCCHHHHHHHHHHHHHh------------c-CCCEEEEEecCHHHHH
Confidence 999999999999999987 9999999999999999999999999998 3 3578999999988777
Q ss_pred hccceEEEeecCCC
Q 036401 1140 KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1140 ~~d~~~GV~~~~~~ 1153 (1154)
.||+++- +++|+
T Consensus 160 ~~d~~~~--l~~g~ 171 (171)
T cd03228 160 DADRIIV--LDDGR 171 (171)
T ss_pred hCCEEEE--EcCCC
Confidence 7999854 45553
No 183
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.26 E-value=8.5e-12 Score=130.65 Aligned_cols=81 Identities=20% Similarity=0.198 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++|||||+++||+.++..+.++|.++. ..+.++|+|||+
T Consensus 138 ~~~~~LSgG~~qrv~laral~~~----p~llllDEP~~gLD~~~~~~~~~~l~~~~------------~~~~tiii~sH~ 201 (224)
T cd03220 138 LPVKTYSSGMKARLAFAIATALE----PDILLIDEVLAVGDAAFQEKCQRRLRELL------------KQGKTVILVSHD 201 (224)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------hCCCEEEEEeCC
Confidence 45678999999999999999987 99999999999999999999999999983 246789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++-+ .+|+
T Consensus 202 ~~~~~~~~d~i~~l--~~G~ 219 (224)
T cd03220 202 PSSIKRLCDRALVL--EKGK 219 (224)
T ss_pred HHHHHHhCCEEEEE--ECCE
Confidence 7665 589998544 4553
No 184
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.26 E-value=6.8e-12 Score=132.09 Aligned_cols=78 Identities=27% Similarity=0.289 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|..+. ..+..+|+|||+
T Consensus 145 ~~~~~LS~G~~qrl~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~g~tii~vsH~ 208 (224)
T TIGR02324 145 LPPATFSGGEQQRVNIARGFIAD----YPILLLDEPTASLDAANRQVVVELIAEAK------------ARGAALIGIFHD 208 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHH------------hcCCEEEEEeCC
Confidence 34779999999999999999987 99999999999999999999999999983 246679999999
Q ss_pred hhHH-HhccceEEEe
Q 036401 1135 DSFY-DKAEALVGVY 1148 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~ 1148 (1154)
...+ ..||+++-+|
T Consensus 209 ~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 209 EEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHhcceeEecC
Confidence 8877 4899998776
No 185
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=7e-12 Score=132.94 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 136 ~~~~~LS~G~~qrv~la~al~~~----p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-----------~~~~tvii~sH~ 200 (233)
T cd03258 136 AYPAQLSGGQKQRVGIARALANN----PKVLLCDEATSALDPETTQSILALLRDINR-----------ELGLTIVLITHE 200 (233)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCCCcCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEeCC
Confidence 35679999999999999999987 999999999999999999999999999831 125679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 201 ~~~~~~~~d~i~~--l~~G~ 218 (233)
T cd03258 201 MEVVKRICDRVAV--MEKGE 218 (233)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 8776 57999854 45554
No 186
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=1.2e-11 Score=118.40 Aligned_cols=88 Identities=26% Similarity=0.301 Sum_probs=75.9
Q ss_pred CcccccccCchhhHHHHHHHHHHh-hcccCCCC-eEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEE
Q 036401 1052 KRFRDMEQLSGGEKTVAALALLFS-IHSYKPSP-FFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSI 1129 (1154)
Q Consensus 1052 ~~~~~~~~lSgGek~~~~la~~~a-~~~~~p~~-~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i 1129 (1154)
...++...|||||+||+.||++|| +|...|.+ +++|||||++||...-...+...+++.++| .-++
T Consensus 128 la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g------------~~V~ 195 (259)
T COG4559 128 LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREG------------GAVL 195 (259)
T ss_pred hhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcC------------CcEE
Confidence 345788999999999999999998 46666666 999999999999999999999999995443 4499
Q ss_pred EEEechhHHH-hccceEEEeecCCC
Q 036401 1130 VISLKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1130 ~it~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
+|=|+.++.. +||++ |-|.+||
T Consensus 196 ~VLHDLNLAA~YaDri--vll~~Gr 218 (259)
T COG4559 196 AVLHDLNLAAQYADRI--VLLHQGR 218 (259)
T ss_pred EEEccchHHHHhhhee--eeeeCCe
Confidence 9999987775 99999 7788886
No 187
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.25 E-value=7.8e-12 Score=138.21 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=70.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++|||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 96 ~~~~~LSgGq~qRvalaraL~~~----p~lllLDEP~s~LD~~~~~~l~~~l~~l~~-----------~~g~tiiivTHd 160 (325)
T TIGR01187 96 RKPHQLSGGQQQRVALARALVFK----PKILLLDEPLSALDKKLRDQMQLELKTIQE-----------QLGITFVFVTHD 160 (325)
T ss_pred CChhhCCHHHHHHHHHHHHHHhC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 45679999999999999999988 999999999999999999999999999831 136789999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. .+..||+++ .|++|+
T Consensus 161 ~~e~~~~~d~i~--vl~~G~ 178 (325)
T TIGR01187 161 QEEAMTMSDRIA--IMRKGK 178 (325)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 65 456899994 455664
No 188
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=5.2e-12 Score=123.58 Aligned_cols=81 Identities=23% Similarity=0.363 Sum_probs=72.9
Q ss_pred CcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1052 KRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1052 ~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
+.++....|||||+|||+||++|+-. |.+++-|||.|+|||.+.+.++++|+++. ...+.++|+.
T Consensus 140 ~A~qra~~LSGGQQQRVaIARaL~Q~----pkiILADEPvasLDp~~a~~Vm~~l~~in-----------~~~g~Tvi~n 204 (258)
T COG3638 140 KAYQRASTLSGGQQQRVAIARALVQQ----PKIILADEPVASLDPESAKKVMDILKDIN-----------QEDGITVIVN 204 (258)
T ss_pred HHHHHhccCCcchhHHHHHHHHHhcC----CCEEecCCcccccChhhHHHHHHHHHHHH-----------HHcCCEEEEE
Confidence 45678899999999999999999988 99999999999999999999999999994 2357789999
Q ss_pred EechhHH-HhccceEEE
Q 036401 1132 SLKDSFY-DKAEALVGV 1147 (1154)
Q Consensus 1132 t~~~~~~-~~~d~~~GV 1147 (1154)
-|+-+++ .+||++||+
T Consensus 205 LH~vdlA~~Y~~Riigl 221 (258)
T COG3638 205 LHQVDLAKKYADRIIGL 221 (258)
T ss_pred echHHHHHHHHhhheEe
Confidence 9997776 499999986
No 189
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=8e-12 Score=136.16 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=69.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 141 ~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tiiivsH~ 204 (280)
T PRK13649 141 KNPFELSGGQMRRVAIAGILAME----PKILVLDEPTAGLDPKGRKELMTLFKKLH------------QSGMTIVLVTHL 204 (280)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------HCCCEEEEEecc
Confidence 45779999999999999999998 99999999999999999999999999983 236679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 205 ~~~~~~~~d~i~~--l~~G~ 222 (280)
T PRK13649 205 MDDVANYADFVYV--LEKGK 222 (280)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 7766 58999853 44443
No 190
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.25 E-value=9.2e-12 Score=129.37 Aligned_cols=75 Identities=24% Similarity=0.372 Sum_probs=67.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|+++. ..+..+|+|||+
T Consensus 130 ~~~~~lS~G~~qr~~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tii~~sh~ 193 (206)
T TIGR03608 130 QKIYELSGGEQQRVALARAILKD----PPLILADEPTGSLDPKNRDEVLDLLLELN------------DEGKTIIIVTHD 193 (206)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCcCCCCHHHHHHHHHHHHHHH------------hcCCEEEEEeCC
Confidence 34678999999999999999988 99999999999999999999999999983 346789999999
Q ss_pred hhHHHhccceE
Q 036401 1135 DSFYDKAEALV 1145 (1154)
Q Consensus 1135 ~~~~~~~d~~~ 1145 (1154)
......||+++
T Consensus 194 ~~~~~~~d~i~ 204 (206)
T TIGR03608 194 PEVAKQADRVI 204 (206)
T ss_pred HHHHhhcCEEE
Confidence 88888999875
No 191
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.25 E-value=7.1e-12 Score=140.58 Aligned_cols=82 Identities=23% Similarity=0.242 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |++++||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 129 ~~~~~LSgGq~QRvaLAraL~~~----P~lLLLDEPts~LD~~~~~~l~~~L~~l~~-----------~~g~tvI~vTHd 193 (369)
T PRK11000 129 RKPKALSGGQRQRVAIGRTLVAE----PSVFLLDEPLSNLDAALRVQMRIEISRLHK-----------RLGRTMIYVTHD 193 (369)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------HhCCEEEEEeCC
Confidence 45679999999999999999988 999999999999999999999999999831 126679999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. .+..||+++ .|++|+
T Consensus 194 ~~~~~~~~d~i~--vl~~G~ 211 (369)
T PRK11000 194 QVEAMTLADKIV--VLDAGR 211 (369)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 65 556899984 456664
No 192
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=1.3e-11 Score=130.64 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=70.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||.+|+.. |++++||||+++||+.++..+.++|..+ . .+.++|+|||+
T Consensus 135 ~~~~~LS~G~~~rv~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tii~~sh~ 197 (229)
T cd03254 135 ENGGNLSQGERQLLAIARAMLRD----PKILILDEATSNIDTETEKLIQEALEKL------------M-KGRTSIIIAHR 197 (229)
T ss_pred cCCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHh------------c-CCCEEEEEecC
Confidence 34779999999999999999988 9999999999999999999999999998 3 46789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+.+|+
T Consensus 198 ~~~~~~~d~i~--~l~~g~ 214 (229)
T cd03254 198 LSTIKNADKIL--VLDDGK 214 (229)
T ss_pred HHHHhhCCEEE--EEeCCe
Confidence 88888899984 445554
No 193
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.25 E-value=8.2e-12 Score=138.77 Aligned_cols=82 Identities=24% Similarity=0.269 Sum_probs=71.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+|+++||++|+.. |++++||||+++||+..+..+...|+++.+ ..+..+|+|||+
T Consensus 130 ~~~~~LSgGq~QRvaLARaL~~~----P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-----------~~~~tvi~vTHd 194 (353)
T TIGR03265 130 KYPGQLSGGQQQRVALARALATS----PGLLLLDEPLSALDARVREHLRTEIRQLQR-----------RLGVTTIMVTHD 194 (353)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEcCC
Confidence 56789999999999999999998 999999999999999999999999999841 136789999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. .+..||++ +.|++|+
T Consensus 195 ~~ea~~l~d~i--~vl~~G~ 212 (353)
T TIGR03265 195 QEEALSMADRI--VVMNHGV 212 (353)
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 65 56799998 5677765
No 194
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=9.7e-12 Score=139.34 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=69.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++|||||+++||+.++..+.++|.++.. ..+..+|||||+
T Consensus 160 ~~~~~LSgGq~QRv~LArAL~~~----P~iLLLDEPts~LD~~~r~~l~~~L~~l~~-----------~~g~TIIivTHd 224 (400)
T PRK10070 160 SYPDELSGGMRQRVGLARALAIN----PDILLMDEAFSALDPLIRTEMQDELVKLQA-----------KHQRTIVFISHD 224 (400)
T ss_pred cCcccCCHHHHHHHHHHHHHhcC----CCEEEEECCCccCCHHHHHHHHHHHHHHHH-----------HCCCeEEEEECC
Confidence 45679999999999999999998 999999999999999999999999999831 135679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 225 ~~~~~~~~Dri~--vL~~G~ 242 (400)
T PRK10070 225 LDEAMRIGDRIA--IMQNGE 242 (400)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 6654 6899995 455554
No 195
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.25 E-value=8.9e-12 Score=131.47 Aligned_cols=82 Identities=28% Similarity=0.312 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 121 ~~~~~LS~G~~qrv~laral~~~----p~vllLDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tiii~sH~ 185 (230)
T TIGR02770 121 KYPFQLSGGMLQRVMIALALLLE----PPFLIADEPTTDLDVVNQARVLKLLRELRQ-----------LFGTGILLITHD 185 (230)
T ss_pred CChhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCccccCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 45679999999999999999988 999999999999999999999999999831 136789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 186 ~~~~~~~~d~i~~--l~~G~ 203 (230)
T TIGR02770 186 LGVVARIADEVAV--MDDGR 203 (230)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 7766 58999854 45553
No 196
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=9.2e-12 Score=134.35 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=69.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++|||||+++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 156 ~~~~~LS~Gq~qrv~lAral~~~----p~illLDEPt~~LD~~~~~~l~~~l~~~~~-----------~~g~tiii~tH~ 220 (269)
T cd03294 156 KYPDELSGGMQQRVGLARALAVD----PDILLMDEAFSALDPLIRREMQDELLRLQA-----------ELQKTIVFITHD 220 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 44678999999999999999988 999999999999999999999999999831 135779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +++|+
T Consensus 221 ~~~~~~~~d~v~~--l~~G~ 238 (269)
T cd03294 221 LDEALRLGDRIAI--MKDGR 238 (269)
T ss_pred HHHHHHhcCEEEE--EECCE
Confidence 7654 68999854 34553
No 197
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.25 E-value=6.3e-12 Score=129.41 Aligned_cols=77 Identities=27% Similarity=0.321 Sum_probs=69.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++|||||+++||+.++..+.++|.++. ..+.++|+|||+
T Consensus 123 ~~~~~LS~G~~~rv~laral~~~----p~~lilDEP~~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sh~ 186 (200)
T PRK13540 123 YPCGLLSSGQKRQVALLRLWMSK----AKLWLLDEPLVALDELSLLTIITKIQEHR------------AKGGAVLLTSHQ 186 (200)
T ss_pred CChhhcCHHHHHHHHHHHHHhcC----CCEEEEeCCCcccCHHHHHHHHHHHHHHH------------HcCCEEEEEeCC
Confidence 34568999999999999999998 99999999999999999999999999983 246779999999
Q ss_pred hhHHHhccceEEEee
Q 036401 1135 DSFYDKAEALVGVYR 1149 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~ 1149 (1154)
......||.. |||
T Consensus 187 ~~~~~~~d~~--~~~ 199 (200)
T PRK13540 187 DLPLNKADYE--EYH 199 (200)
T ss_pred chhccccchh--hcc
Confidence 9999999987 454
No 198
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.25 E-value=1.1e-11 Score=132.48 Aligned_cols=80 Identities=16% Similarity=0.296 Sum_probs=69.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 140 ~~~~~LSgG~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tiiivsH~ 202 (247)
T TIGR00972 140 DSALGLSGGQQQRLCIARALAVE----PEVLLLDEPTSALDPIATGKIEELIQEL------------K-KKYTIVIVTHN 202 (247)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------H-hcCeEEEEecC
Confidence 45789999999999999999987 9999999999999999999999999998 2 23689999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 203 ~~~~~~~~d~i~--~l~~G~ 220 (247)
T TIGR00972 203 MQQAARISDRTA--FFYDGE 220 (247)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 8755 6899984 455554
No 199
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=6.2e-12 Score=133.97 Aligned_cols=82 Identities=17% Similarity=0.252 Sum_probs=69.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++|||||+++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 131 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~L~~~~~-----------~~g~tvii~sH~ 195 (242)
T cd03295 131 RYPHELSGGQQQRVGVARALAAD----PPLLLMDEPFGALDPITRDQLQEEFKRLQQ-----------ELGKTIVFVTHD 195 (242)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCcccCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEecC
Confidence 55789999999999999999987 999999999999999999999999999831 125679999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++ .+++|+
T Consensus 196 ~~~~~~~~d~i~--~l~~G~ 213 (242)
T cd03295 196 IDEAFRLADRIA--IMKNGE 213 (242)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 775 46899985 445554
No 200
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.25 E-value=1e-11 Score=129.45 Aligned_cols=82 Identities=24% Similarity=0.252 Sum_probs=69.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++|||||++||+.++..+.++|.++. ...+.++|+|||+
T Consensus 124 ~~~~~LS~G~~qrl~laral~~~----p~llllDEPt~~LD~~~~~~~~~~l~~~~-----------~~~~~tii~vsh~ 188 (213)
T TIGR01277 124 RLPEQLSGGQRQRVALARCLVRP----NPILLLDEPFSALDPLLREEMLALVKQLC-----------SERQRTLLMVTHH 188 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHH-----------HhcCCEEEEEeCC
Confidence 45669999999999999999987 99999999999999999999999999983 1136789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
.... ..||+++- +.+|+
T Consensus 189 ~~~~~~~~d~v~~--l~~g~ 206 (213)
T TIGR01277 189 LSDARAIASQIAV--VSQGK 206 (213)
T ss_pred HHHHHhhcCeEEE--EECCe
Confidence 7664 58999854 45554
No 201
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=1.1e-11 Score=126.45 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=65.4
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh--
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS-- 1136 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~-- 1136 (1154)
.|||||+++++||++++.. ||+++||||+++||+.++..+.++|.++. ..+.++|+|||+..
T Consensus 108 ~LSgGe~qrv~la~al~~~----p~vlllDEP~~~LD~~~~~~l~~~l~~~~------------~~~~tiiivtH~~~~~ 171 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAK----PSILFLDEPTSGLDSQAAYNIVRFLKKLA------------DSGQAILCTIHQPSAS 171 (192)
T ss_pred cCCHHHhHHHHHHHHHhcC----CcEEEEeCCCcCCCHHHHHHHHHHHHHHH------------HcCCEEEEEEcCChHH
Confidence 8999999999999999988 99999999999999999999999999983 24678999999976
Q ss_pred HHHhccceEEE
Q 036401 1137 FYDKAEALVGV 1147 (1154)
Q Consensus 1137 ~~~~~d~~~GV 1147 (1154)
....||+++-+
T Consensus 172 ~~~~~d~i~~l 182 (192)
T cd03232 172 IFEKFDRLLLL 182 (192)
T ss_pred HHhhCCEEEEE
Confidence 36789998543
No 202
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.25 E-value=1.1e-11 Score=127.33 Aligned_cols=79 Identities=28% Similarity=0.345 Sum_probs=69.0
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...|||||+++++||++++.. ||+++||||+++||+.++..+.++|.++. ..+.++|++||+..
T Consensus 102 ~~~LS~G~~qrv~laral~~~----p~illlDEPt~~LD~~~~~~l~~~L~~~~------------~~~~tiii~sh~~~ 165 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLE----PDLAILDEPDSGLDIDALRLVAEVINKLR------------EEGKSVLIITHYQR 165 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHH------------HCCCEEEEEecCHH
Confidence 368999999999999999987 99999999999999999999999999983 24678999999988
Q ss_pred HHH--hccceEEEeecCCC
Q 036401 1137 FYD--KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~--~~d~~~GV~~~~~~ 1153 (1154)
.+. .||+++.+ ++|+
T Consensus 166 ~~~~~~~d~i~~l--~~G~ 182 (200)
T cd03217 166 LLDYIKPDRVHVL--YDGR 182 (200)
T ss_pred HHHHhhCCEEEEE--ECCE
Confidence 877 79999654 4443
No 203
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1.2e-11 Score=132.90 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=70.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. ||++|||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 134 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~l~------------~~~~tiii~tH~ 197 (255)
T PRK11231 134 RRLTDLSGGQRQRAFLAMVLAQD----TPVVLLDEPTTYLDINHQVELMRLMRELN------------TQGKTVVTVLHD 197 (255)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHH------------HCCCEEEEEECC
Confidence 45789999999999999999998 99999999999999999999999999983 246789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 198 ~~~~~~~~d~i~--~l~~G~ 215 (255)
T PRK11231 198 LNQASRYCDHLV--VLANGH 215 (255)
T ss_pred HHHHHHhcCEEE--EEECCe
Confidence 7754 6899985 345554
No 204
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.24 E-value=9e-12 Score=134.55 Aligned_cols=82 Identities=20% Similarity=0.213 Sum_probs=69.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++. ...+..+|+|||+
T Consensus 139 ~~~~~LSgGq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----------~~~g~tiiivsH~ 203 (269)
T PRK11831 139 LMPSELSGGMARRAALARAIALE----PDLIMFDEPFVGQDPITMGVLVKLISELN-----------SALGVTCVVVSHD 203 (269)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHH-----------HhcCcEEEEEecC
Confidence 45679999999999999999988 99999999999999999999999999983 1125789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 204 ~~~~~~~~d~v~--~l~~G~ 221 (269)
T PRK11831 204 VPEVLSIADHAY--IVADKK 221 (269)
T ss_pred HHHHHHhhCEEE--EEECCE
Confidence 6554 5899984 445553
No 205
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.2e-11 Score=132.36 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tiiivtH~ 204 (250)
T PRK14245 142 ESAFALSGGQQQRLCIARAMAVS----PSVLLMDEPASALDPISTAKVEELIHEL------------K-KDYTIVIVTHN 204 (250)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHH------------h-cCCeEEEEeCC
Confidence 45779999999999999999987 9999999999999999999999999998 3 35789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +++|+
T Consensus 205 ~~~~~~~~d~v~~--l~~G~ 222 (250)
T PRK14245 205 MQQAARVSDKTAF--FYMGE 222 (250)
T ss_pred HHHHHhhCCEEEE--EECCE
Confidence 7665 68999854 44553
No 206
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.24 E-value=9.3e-12 Score=130.01 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=69.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 126 ~~~~~LS~G~~qr~~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tvi~~sH~ 190 (213)
T cd03301 126 RKPKQLSGGQRQRVALGRAIVRE----PKVFLMDEPLSNLDAKLRVQMRAELKRLQQ-----------RLGTTTIYVTHD 190 (213)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEeCC
Confidence 45679999999999999999987 999999999999999999999999999831 125679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 191 ~~~~~~~~d~i~~--l~~g~ 208 (213)
T cd03301 191 QVEAMTMADRIAV--MNDGQ 208 (213)
T ss_pred HHHHHHhcCeEEE--EECCE
Confidence 7655 57999853 45553
No 207
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.24 E-value=1.1e-11 Score=132.12 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 132 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sH~ 195 (240)
T PRK09493 132 HYPSELSGGQQQRVAIARALAVK----PKLMLFDEPTSALDPELRHEVLKVMQDLA------------EEGMTMVIVTHE 195 (240)
T ss_pred cChhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHH------------HcCCEEEEEeCC
Confidence 34679999999999999999987 99999999999999999999999999983 246779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 196 ~~~~~~~~d~i~~--l~~G~ 213 (240)
T PRK09493 196 IGFAEKVASRLIF--IDKGR 213 (240)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 7766 57999854 45553
No 208
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.24 E-value=1.1e-11 Score=130.22 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=69.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 129 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tii~~sH~ 191 (220)
T cd03263 129 KRARTLSGGMKRKLSLAIALIGG----PSVLLLDEPTSGLDPASRRAIWDLILEV------------R-KGRSIILTTHS 191 (220)
T ss_pred ChhhhCCHHHHHHHHHHHHHhcC----CCEEEECCCCCCCCHHHHHHHHHHHHHH------------h-cCCEEEEEcCC
Confidence 44679999999999999999987 9999999999999999999999999999 3 34789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 192 ~~~~~~~~d~i~--~l~~g~ 209 (220)
T cd03263 192 MDEAEALCDRIA--IMSDGK 209 (220)
T ss_pred HHHHHHhcCEEE--EEECCE
Confidence 8766 5799985 445554
No 209
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.2e-11 Score=134.75 Aligned_cols=82 Identities=20% Similarity=0.265 Sum_probs=70.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||.+|+.. |+++|||||+++||+.++..+.++|.++.. ..+.++|+|||+
T Consensus 141 ~~~~~LSgGq~qrv~laraL~~~----p~illlDEPt~~LD~~~~~~l~~~l~~l~~-----------~~g~tvl~vtH~ 205 (286)
T PRK13646 141 QSPFQMSGGQMRKIAIVSILAMN----PDIIVLDEPTAGLDPQSKRQVMRLLKSLQT-----------DENKTIILVSHD 205 (286)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC----CCEEEEECCcccCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEecC
Confidence 45789999999999999999998 999999999999999999999999999831 136789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 206 ~~~~~~~~dri~--~l~~G~ 223 (286)
T PRK13646 206 MNEVARYADEVI--VMKEGS 223 (286)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7665 6899984 455554
No 210
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.24 E-value=6.9e-12 Score=135.29 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=69.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-----------~~g~tviivsH~ 209 (267)
T PRK15112 145 YYPHMLAPGQKQRLGLARALILR----PKVIIADEALASLDMSMRSQLINLMLELQE-----------KQGISYIYVTQH 209 (267)
T ss_pred cCchhcCHHHHHHHHHHHHHHhC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-----------HcCcEEEEEeCC
Confidence 35679999999999999999988 999999999999999999999999999831 125679999999
Q ss_pred hhHHH-hccceEEEeecCC
Q 036401 1135 DSFYD-KAEALVGVYRDSD 1152 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~ 1152 (1154)
...+. .||+++- +.+|
T Consensus 210 ~~~~~~~~d~i~~--l~~G 226 (267)
T PRK15112 210 LGMMKHISDQVLV--MHQG 226 (267)
T ss_pred HHHHHHhcCEEEE--EECC
Confidence 77765 7999854 4444
No 211
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.24 E-value=8.8e-12 Score=133.14 Aligned_cols=84 Identities=25% Similarity=0.221 Sum_probs=74.6
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..+.|.+|||||+||||||++++.. |++++||||.++||+.-|..+...|+.+.+ .-+.++|+||
T Consensus 127 L~r~P~~LSGGQrQRVAlaRAlVr~----P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~-----------~l~~T~IYVT 191 (338)
T COG3839 127 LNRKPLQLSGGQRQRVALARALVRK----PKVFLLDEPLSNLDAKLRVLMRSEIKKLHE-----------RLGTTTIYVT 191 (338)
T ss_pred HhcCcccCChhhHHHHHHHHHHhcC----CCEEEecCchhHhhHHHHHHHHHHHHHHHH-----------hcCCcEEEEc
Confidence 4577999999999999999999998 999999999999999999999999999853 2356799999
Q ss_pred ec-hhHHHhccceEEEeecCCC
Q 036401 1133 LK-DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1133 ~~-~~~~~~~d~~~GV~~~~~~ 1153 (1154)
|+ .+.|.+||++ |.|.+|+
T Consensus 192 HDq~EAmtladri--~Vm~~G~ 211 (338)
T COG3839 192 HDQVEAMTLADRI--VVMNDGR 211 (338)
T ss_pred CCHHHHHhhCCEE--EEEeCCe
Confidence 98 7889999999 6677775
No 212
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.24 E-value=1.4e-11 Score=132.38 Aligned_cols=81 Identities=23% Similarity=0.335 Sum_probs=70.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 133 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sH~ 196 (256)
T TIGR03873 133 RDMSTLSGGERQRVHVARALAQE----PKLLLLDEPTNHLDVRAQLETLALVRELA------------ATGVTVVAALHD 196 (256)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCccccCCHHHHHHHHHHHHHHH------------hcCCEEEEEeCC
Confidence 45779999999999999999998 99999999999999999999999999983 246779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 197 ~~~~~~~~d~i~--~l~~G~ 214 (256)
T TIGR03873 197 LNLAASYCDHVV--VLDGGR 214 (256)
T ss_pred HHHHHHhCCEEE--EEeCCC
Confidence 7777 6899995 445554
No 213
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.24 E-value=1.6e-11 Score=121.29 Aligned_cols=77 Identities=25% Similarity=0.256 Sum_probs=66.5
Q ss_pred CchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHH
Q 036401 1060 LSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYD 1139 (1154)
Q Consensus 1060 lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~ 1139 (1154)
||||||++++||++|+.. |++++||||+++||+.++..+.+.|.++.+ ..+..+|+|||+...+.
T Consensus 72 LSgGq~qrv~laral~~~----p~lllLDEPts~LD~~~~~~l~~~l~~~~~-----------~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 72 LSGGELQRVAIAAALLRN----ATFYLFDEPSAYLDIEQRLNAARAIRRLSE-----------EGKKTALVVEHDLAVLD 136 (177)
T ss_pred CCHHHHHHHHHHHHHhcC----CCEEEEECCcccCCHHHHHHHHHHHHHHHH-----------cCCCEEEEEECCHHHHH
Confidence 999999999999999998 999999999999999999999999999831 12367999999977665
Q ss_pred -hccceEEEeecC
Q 036401 1140 -KAEALVGVYRDS 1151 (1154)
Q Consensus 1140 -~~d~~~GV~~~~ 1151 (1154)
.||+++-+...+
T Consensus 137 ~~~d~i~~l~~~~ 149 (177)
T cd03222 137 YLSDRIHVFEGEP 149 (177)
T ss_pred HhCCEEEEEcCCC
Confidence 899997665443
No 214
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.4e-11 Score=132.29 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=69.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tvii~tH~ 207 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVE----PEVLLMDEPASALDPIATQKIEELIHEL------------K-ARYTIIIVTHN 207 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------h-cCCeEEEEEec
Confidence 45779999999999999999987 9999999999999999999999999999 3 35689999999
Q ss_pred hhHH-HhccceEEEeecCC
Q 036401 1135 DSFY-DKAEALVGVYRDSD 1152 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~ 1152 (1154)
...+ ..||+++- +++|
T Consensus 208 ~~~~~~~~d~v~~--l~~G 224 (253)
T PRK14242 208 MQQAARVSDVTAF--FYMG 224 (253)
T ss_pred HHHHHHhCCEEEE--EECC
Confidence 7665 68999954 3444
No 215
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.3e-11 Score=133.45 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=70.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++|||||++||+.++..+.++|.++. ..+..+|++||+
T Consensus 132 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~l~------------~~g~til~~tH~ 195 (274)
T PRK13644 132 RSPKTLSGGQGQCVALAGILTME----PECLIFDEVTSMLDPDSGIAVLERIKKLH------------EKGKTIVYITHN 195 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------hCCCEEEEEecC
Confidence 35679999999999999999998 99999999999999999999999999983 246789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++- +.+|+
T Consensus 196 ~~~~~~~d~v~~--l~~G~ 212 (274)
T PRK13644 196 LEELHDADRIIV--MDRGK 212 (274)
T ss_pred HHHHhhCCEEEE--EECCE
Confidence 888888999854 44443
No 216
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.24 E-value=1.5e-05 Score=95.14 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhhcCC-ChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 935 FKQKMDALISEIEKTAP-NLKALD-QYEALLEKERTVTEEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRI 1012 (1154)
Q Consensus 935 ~~~~l~~l~~~i~~l~~-n~~a~e-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~ 1012 (1154)
+..++..+...++. || ||.|++ +|+++.+++.++..+.+++..+...+...|.. .++|+.+|..|+..|..-
T Consensus 453 ~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-----~nRfr~~~~~V~~~f~~A 526 (569)
T PRK04778 453 VSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-----ANRYRSDNEEVAEALNEA 526 (569)
T ss_pred HHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCCCCHHHHHHHHHH
Confidence 67889999999999 88 999999 99999999999999999999999999999888 899999999999999864
Q ss_pred H
Q 036401 1013 Y 1013 (1154)
Q Consensus 1013 ~ 1013 (1154)
-
T Consensus 527 e 527 (569)
T PRK04778 527 E 527 (569)
T ss_pred H
Confidence 4
No 217
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=1.5e-11 Score=130.79 Aligned_cols=80 Identities=29% Similarity=0.372 Sum_probs=70.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|..+ .. +..+|+|||+
T Consensus 133 ~~~~~LS~G~~~rl~la~aL~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~------------~~-~~tiii~sh~ 195 (236)
T cd03253 133 ERGLKLSGGEKQRVAIARAILKN----PPILLLDEATSALDTHTEREIQAALRDV------------SK-GRTTIVIAHR 195 (236)
T ss_pred cCCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHh------------cC-CCEEEEEcCC
Confidence 34779999999999999999998 9999999999999999999999999998 33 6789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
......||+++ .+.+|+
T Consensus 196 ~~~~~~~d~~~--~l~~g~ 212 (236)
T cd03253 196 LSTIVNADKII--VLKDGR 212 (236)
T ss_pred HHHHHhCCEEE--EEECCE
Confidence 88888899984 455553
No 218
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.3e-11 Score=132.57 Aligned_cols=80 Identities=15% Similarity=0.263 Sum_probs=69.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++|||||++||+.++..+.++|+++ . .+.++|+|||+
T Consensus 150 ~~~~~LSgG~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~l------------~-~~~tiiivsH~ 212 (258)
T PRK14268 150 SPALSLSGGQQQRLCIARTLAVK----PKIILFDEPTSALDPISTARIEDLIMNL------------K-KDYTIVIVTHN 212 (258)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEeCCCcccCHHHHHHHHHHHHHH------------h-hCCEEEEEECC
Confidence 45779999999999999999998 9999999999999999999999999998 3 35789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 213 ~~~~~~~~d~i~--~l~~G~ 230 (258)
T PRK14268 213 MQQAARISDYTG--FFLMGE 230 (258)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7665 6899985 345554
No 219
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.2e-11 Score=138.00 Aligned_cols=79 Identities=24% Similarity=0.231 Sum_probs=72.3
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
....|||||+||++||++|... +|+++||||||+||..+-..+.+.|.++ . ++..+|+|||+.
T Consensus 453 ~G~~LSgGQ~QRlaLARAll~~----~~l~llDEpTA~LD~etE~~i~~~l~~l------------~-~~ktvl~itHrl 515 (559)
T COG4988 453 GGAGLSGGQAQRLALARALLSP----ASLLLLDEPTAHLDAETEQIILQALQEL------------A-KQKTVLVITHRL 515 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhcCC----CCEEEecCCccCCCHhHHHHHHHHHHHH------------H-hCCeEEEEEcCh
Confidence 3457999999999999999765 9999999999999999999999999999 3 678899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
..+..||++ |.|++|+
T Consensus 516 ~~~~~~D~I--~vld~G~ 531 (559)
T COG4988 516 EDAADADRI--VVLDNGR 531 (559)
T ss_pred HHHhcCCEE--EEecCCc
Confidence 999999999 6788876
No 220
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.23 E-value=1.1e-11 Score=138.74 Aligned_cols=82 Identities=23% Similarity=0.257 Sum_probs=69.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |++++||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 127 ~~~~~LSgGqkqRvalAraL~~~----p~lllLDEPts~LD~~~~~~l~~~L~~l~~-----------~~g~tiiivtH~ 191 (354)
T TIGR02142 127 RLPGRLSGGEKQRVAIGRALLSS----PRLLLMDEPLAALDDPRKYEILPYLERLHA-----------EFGIPILYVSHS 191 (354)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEecC
Confidence 45679999999999999999998 999999999999999999999999999831 125679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||++ +.|++|+
T Consensus 192 ~~~~~~~~d~i--~~l~~G~ 209 (354)
T TIGR02142 192 LQEVLRLADRV--VVLEDGR 209 (354)
T ss_pred HHHHHHhCCEE--EEEeCCE
Confidence 6654 689998 4556654
No 221
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1.3e-11 Score=131.63 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++|||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 137 ~~~~~LS~G~~qrv~laral~~~----p~llilDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tii~~sh~ 200 (242)
T PRK11124 137 RFPLHLSGGQQQRVAIARALMME----PQVLLFDEPTAALDPEITAQIVSIIRELA------------ETGITQVIVTHE 200 (242)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCCcCCHHHHHHHHHHHHHHH------------HcCCEEEEEeCC
Confidence 34679999999999999999998 99999999999999999999999999983 246779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
.... ..||+++-+ .+|+
T Consensus 201 ~~~~~~~~d~i~~l--~~g~ 218 (242)
T PRK11124 201 VEVARKTASRVVYM--ENGH 218 (242)
T ss_pred HHHHHHhcCEEEEE--ECCE
Confidence 7776 579998543 4443
No 222
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.1e-11 Score=138.35 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=70.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |++++||||+++||+.++..+.++|+++.+ ..+..+|+|||+
T Consensus 124 ~~~~~LSgGq~qRvalaraL~~~----p~llLLDEPts~LD~~~~~~l~~~L~~l~~-----------~~g~tii~vTHd 188 (352)
T PRK11144 124 RYPGSLSGGEKQRVAIGRALLTA----PELLLMDEPLASLDLPRKRELLPYLERLAR-----------EINIPILYVSHS 188 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-----------hcCCeEEEEecC
Confidence 45679999999999999999998 999999999999999999999999999831 125679999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. ....||++ +.|++|+
T Consensus 189 ~~~~~~~~d~i--~~l~~G~ 206 (352)
T PRK11144 189 LDEILRLADRV--VVLEQGK 206 (352)
T ss_pred HHHHHHhCCEE--EEEeCCE
Confidence 65 55689998 4556664
No 223
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=1.8e-11 Score=129.97 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=70.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 134 ~~~~~LS~G~~qrv~la~al~~~----p~lllLDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tii~~sh~ 196 (234)
T cd03251 134 ERGVKLSGGQRQRIAIARALLKD----PPILILDEATSALDTESERLVQAALERL------------M-KNRTTFVIAHR 196 (234)
T ss_pred cCCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHh------------c-CCCEEEEEecC
Confidence 34779999999999999999988 9999999999999999999999999999 3 46789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||++ +.+++|+
T Consensus 197 ~~~~~~~d~v--~~l~~G~ 213 (234)
T cd03251 197 LSTIENADRI--VVLEDGK 213 (234)
T ss_pred HHHHhhCCEE--EEecCCe
Confidence 8887789999 4456654
No 224
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.23 E-value=9.6e-12 Score=133.83 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=70.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|..+. ...+..+|+|||+
T Consensus 147 ~~~~~LS~Gq~qrl~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~-----------~~~~~tii~isH~ 211 (258)
T PRK11701 147 DLPTTFSGGMQQRLQIARNLVTH----PRLVFMDEPTGGLDVSVQARLLDLLRGLV-----------RELGLAVVIVTHD 211 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHH-----------HhcCcEEEEEeCC
Confidence 45779999999999999999987 99999999999999999999999999983 1136789999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++- +++|+
T Consensus 212 ~~~~~~~~d~i~~--l~~g~ 229 (258)
T PRK11701 212 LAVARLLAHRLLV--MKQGR 229 (258)
T ss_pred HHHHHHhcCEEEE--EECCE
Confidence 88775 8999854 45553
No 225
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.23 E-value=1.4e-11 Score=138.21 Aligned_cols=82 Identities=24% Similarity=0.320 Sum_probs=71.4
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||++|+.. |+++||||||++||+.++..+.++|+++. ..+..+|++||
T Consensus 134 ~~~~~~LSgGerQRv~IArAL~~~----P~iLLLDEPtsgLD~~~~~~l~~lL~~l~------------~~g~TIIivsH 197 (402)
T PRK09536 134 DRPVTSLSGGERQRVLLARALAQA----TPVLLLDEPTASLDINHQVRTLELVRRLV------------DDGKTAVAAIH 197 (402)
T ss_pred cCChhhCCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHHH------------hcCCEEEEEEC
Confidence 356789999999999999999988 99999999999999999999999999993 24668999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++ .+++|+
T Consensus 198 dl~~~~~~adrii--~l~~G~ 216 (402)
T PRK09536 198 DLDLAARYCDELV--LLADGR 216 (402)
T ss_pred CHHHHHHhCCEEE--EEECCE
Confidence 97666 6899995 445554
No 226
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.7e-11 Score=131.54 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 142 ~~~~~LSgG~~qrv~laral~~~----p~lllLDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tiii~sH~ 204 (250)
T PRK14247 142 APAGKLSGGQQQRLCIARALAFQ----PEVLLADEPTANLDPENTAKIESLFLEL------------K-KDMTIVLVTHF 204 (250)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHH------------h-cCCEEEEEeCC
Confidence 45779999999999999999987 9999999999999999999999999998 3 35789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 205 ~~~~~~~~d~i~~--l~~G~ 222 (250)
T PRK14247 205 PQQAARISDYVAF--LYKGQ 222 (250)
T ss_pred HHHHHHhcCEEEE--EECCe
Confidence 7766 58999854 45554
No 227
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.4e-11 Score=130.88 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=69.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|..+.. ..+..+|+|||+
T Consensus 127 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~g~tii~~sH~ 191 (241)
T PRK14250 127 RDVKNLSGGEAQRVSIARTLANN----PEVLLLDEPTSALDPTSTEIIEELIVKLKN-----------KMNLTVIWITHN 191 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEecc
Confidence 45779999999999999999987 999999999999999999999999999831 136789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 192 ~~~~~~~~d~i~--~l~~G~ 209 (241)
T PRK14250 192 MEQAKRIGDYTA--FLNKGI 209 (241)
T ss_pred HHHHHHhCCEEE--EEeCCE
Confidence 7765 5899985 345553
No 228
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.7e-11 Score=131.69 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 146 ~~~~~LSgG~~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tvii~sH~ 208 (254)
T PRK14273 146 TNALSLSGGQQQRLCIARTLAIE----PNVILMDEPTSALDPISTGKIEELIINL------------K-ESYTIIIVTHN 208 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCcccCHHHHHHHHHHHHHH------------h-cCCEEEEEeCC
Confidence 45789999999999999999987 9999999999999999999999999999 3 35679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 209 ~~~~~~~~d~i~--~l~~G~ 226 (254)
T PRK14273 209 MQQAGRISDRTA--FFLNGC 226 (254)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7765 5899985 445554
No 229
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1.4e-11 Score=132.95 Aligned_cols=82 Identities=27% Similarity=0.323 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 143 ~~~~~LSgG~~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~~~~~l~~l~~-----------~~~~tiii~sH~ 207 (265)
T PRK10575 143 RLVDSLSGGERQRAWIAMLVAQD----SRCLLLDEPTSALDIAHQVDVLALVHRLSQ-----------ERGLTVIAVLHD 207 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 45779999999999999999998 999999999999999999999999999831 125779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 208 ~~~i~~~~d~i~--~l~~G~ 225 (265)
T PRK10575 208 INMAARYCDYLV--ALRGGE 225 (265)
T ss_pred HHHHHHhCCEEE--EEECCe
Confidence 7765 6899985 445554
No 230
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.23 E-value=1.2e-11 Score=129.94 Aligned_cols=81 Identities=25% Similarity=0.278 Sum_probs=70.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++. ..+.++|+|||+
T Consensus 120 ~~~~~LS~G~~~rv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~L~~~~------------~~~~tiii~sH~ 183 (223)
T TIGR03740 120 KKAKQFSLGMKQRLGIAIALLNH----PKLLILDEPTNGLDPIGIQELRELIRSFP------------EQGITVILSSHI 183 (223)
T ss_pred hhHhhCCHHHHHHHHHHHHHhcC----CCEEEECCCccCCCHHHHHHHHHHHHHHH------------HCCCEEEEEcCC
Confidence 45779999999999999999988 99999999999999999999999999983 246679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++-+ .+|+
T Consensus 184 ~~~~~~~~d~i~~l--~~g~ 201 (223)
T TIGR03740 184 LSEVQQLADHIGII--SEGV 201 (223)
T ss_pred HHHHHHhcCEEEEE--eCCE
Confidence 8766 589999544 4443
No 231
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.23 E-value=2.1e-11 Score=128.26 Aligned_cols=80 Identities=23% Similarity=0.244 Sum_probs=70.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+.++|++||+
T Consensus 135 ~~~~~LS~G~~qr~~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tii~~sh~ 197 (221)
T cd03244 135 EGGENLSVGQRQLLCLARALLRK----SKILVLDEATASVDPETDALIQKTIREA------------F-KDCTVLTIAHR 197 (221)
T ss_pred cCCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHh------------c-CCCEEEEEeCC
Confidence 35779999999999999999988 9999999999999999999999999998 3 35789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
......||+++ .+.+|+
T Consensus 198 ~~~~~~~d~i~--~l~~g~ 214 (221)
T cd03244 198 LDTIIDSDRIL--VLDKGR 214 (221)
T ss_pred HHHHhhCCEEE--EEECCe
Confidence 88888899984 445554
No 232
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1.4e-11 Score=130.33 Aligned_cols=82 Identities=23% Similarity=0.207 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++. ...+.++|+|||+
T Consensus 125 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEP~~gLD~~~~~~~~~~l~~~~-----------~~~~~tiii~sH~ 189 (232)
T PRK10771 125 RLPGQLSGGQRQRVALARCLVRE----QPILLLDEPFSALDPALRQEMLTLVSQVC-----------QERQLTLLMVSHS 189 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH-----------HhcCCEEEEEECC
Confidence 45679999999999999999988 99999999999999999999999999983 1136789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 190 ~~~~~~~~d~i~~--l~~g~ 207 (232)
T PRK10771 190 LEDAARIAPRSLV--VADGR 207 (232)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 8765 58999854 44553
No 233
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.23 E-value=2.5e-11 Score=116.82 Aligned_cols=74 Identities=27% Similarity=0.337 Sum_probs=64.8
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHH
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFY 1138 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~ 1138 (1154)
+|||||+++++||++|+.. ||+++||||+++||+.++..+.++|+++ . .++|+|||+...+
T Consensus 70 ~lS~G~~~rv~laral~~~----p~illlDEP~~~LD~~~~~~l~~~l~~~------------~---~til~~th~~~~~ 130 (144)
T cd03221 70 QLSGGEKMRLALAKLLLEN----PNLLLLDEPTNHLDLESIEALEEALKEY------------P---GTVILVSHDRYFL 130 (144)
T ss_pred cCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHc------------C---CEEEEEECCHHHH
Confidence 3999999999999999988 9999999999999999999999999987 2 4799999997666
Q ss_pred -HhccceEEEeecCCC
Q 036401 1139 -DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1139 -~~~d~~~GV~~~~~~ 1153 (1154)
..||+++ .+++|+
T Consensus 131 ~~~~d~v~--~l~~g~ 144 (144)
T cd03221 131 DQVATKII--ELEDGK 144 (144)
T ss_pred HHhCCEEE--EEeCCC
Confidence 5799995 455654
No 234
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.23 E-value=1.6e-11 Score=129.97 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++. ...+..+|+|||+
T Consensus 149 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~-----------~~~~~tiiivsH~ 213 (236)
T cd03267 149 TPVRQLSLGQRMRAEIAAALLHE----PEILFLDEPTIGLDVVAQENIRNFLKEYN-----------RERGTTVLLTSHY 213 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHHH-----------hcCCCEEEEEecC
Confidence 34678999999999999999998 99999999999999999999999999983 1135789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++-+ .+|+
T Consensus 214 ~~~~~~~~d~i~~l--~~G~ 231 (236)
T cd03267 214 MKDIEALARRVLVI--DKGR 231 (236)
T ss_pred HHHHHHhCCEEEEE--eCCE
Confidence 8765 589999654 4553
No 235
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.23 E-value=1.7e-11 Score=130.81 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++|||||++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 139 ~~~~~LS~Ge~qrv~laral~~~----p~~lllDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tii~~sH~ 201 (242)
T TIGR03411 139 RLAGLLSHGQKQWLEIGMLLMQD----PKLLLLDEPVAGMTDEETEKTAELLKSL------------A-GKHSVVVVEHD 201 (242)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCccCCCHHHHHHHHHHHHHH------------h-cCCEEEEEECC
Confidence 45779999999999999999998 9999999999999999999999999999 3 25689999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++-+ .+|+
T Consensus 202 ~~~~~~~~d~i~~l--~~g~ 219 (242)
T TIGR03411 202 MEFVRSIADKVTVL--HQGS 219 (242)
T ss_pred HHHHHHhCCEEEEE--ECCe
Confidence 7766 489998543 4453
No 236
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.23 E-value=1.7e-11 Score=138.32 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++|||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 139 ~~~~~LSGGQrQRVaLArAL~~~----P~LLLLDEPTsgLD~~sr~~LlelL~el~------------~~G~TIIIVSHd 202 (549)
T PRK13545 139 QPVKTYSSGMKSRLGFAISVHIN----PDILVIDEALSVGDQTFTKKCLDKMNEFK------------EQGKTIFFISHS 202 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC----CCEEEEECCcccCCHHHHHHHHHHHHHHH------------hCCCEEEEEECC
Confidence 45789999999999999999998 99999999999999999999999999983 346679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +++|+
T Consensus 203 l~~i~~l~DrIiv--L~~Gk 220 (549)
T PRK13545 203 LSQVKSFCTKALW--LHYGQ 220 (549)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 7666 57999854 44553
No 237
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.22 E-value=1.4e-11 Score=146.87 Aligned_cols=79 Identities=25% Similarity=0.285 Sum_probs=73.5
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
....|||||||+++||++|... ||+++|||||++||+.+-..+.+.|.++ . .+.++|+||||.
T Consensus 606 ~G~~LSGGQrQrlalARaLl~~----P~ILlLDEaTSaLD~~sE~~I~~~L~~~------------~-~~~T~I~IaHRl 668 (709)
T COG2274 606 GGANLSGGQRQRLALARALLSK----PKILLLDEATSALDPETEAIILQNLLQI------------L-QGRTVIIIAHRL 668 (709)
T ss_pred CCCCCCHHHHHHHHHHHHhccC----CCEEEEeCcccccCHhHHHHHHHHHHHH------------h-cCCeEEEEEccc
Confidence 4568999999999999999988 9999999999999999999999999999 3 678899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..||++ |.|++|+
T Consensus 669 ~ti~~adrI--iVl~~Gk 684 (709)
T COG2274 669 STIRSADRI--IVLDQGK 684 (709)
T ss_pred hHhhhccEE--EEccCCc
Confidence 999999999 6688886
No 238
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.22 E-value=1.7e-11 Score=131.56 Aligned_cols=85 Identities=29% Similarity=0.404 Sum_probs=68.9
Q ss_pred cccccCchhhHHHHHHHHHHhhccc---CCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSY---KPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~---~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
+.+..|||||+++++||++|+.. . .+|++++|||||++||+.++..+.++|.++.+ ..+..+|+|
T Consensus 130 ~~~~~LSgGe~qrv~la~al~~~-~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tiii~ 197 (258)
T PRK13548 130 RDYPQLSGGEQQRVQLARVLAQL-WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAH-----------ERGLAVIVV 197 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcc-cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEE
Confidence 45789999999999999999941 0 12899999999999999999999999999830 235679999
Q ss_pred EechhHH-HhccceEEEeecCCC
Q 036401 1132 SLKDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1132 t~~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
||+...+ ..||+++ .+.+|+
T Consensus 198 sH~~~~~~~~~d~i~--~l~~G~ 218 (258)
T PRK13548 198 LHDLNLAARYADRIV--LLHQGR 218 (258)
T ss_pred ECCHHHHHHhcCEEE--EEECCE
Confidence 9997666 4899995 444553
No 239
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.22 E-value=2e-11 Score=131.36 Aligned_cols=76 Identities=14% Similarity=0.258 Sum_probs=68.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++||||+++||+.++..+..+|.++ . .+.++|+|||+
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tviivsH~ 206 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVE----PDVLLMDEPCSALDPISTLAIEDLINEL------------K-QDYTIVIVTHN 206 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHH------------h-cCCEEEEEecC
Confidence 45789999999999999999988 9999999999999999999999999999 3 34689999999
Q ss_pred hhHH-HhccceEEE
Q 036401 1135 DSFY-DKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV 1147 (1154)
...+ ..||+++-+
T Consensus 207 ~~~~~~~~d~i~~l 220 (258)
T PRK14241 207 MQQAARVSDQTAFF 220 (258)
T ss_pred HHHHHHhCCEEEEE
Confidence 7665 689999755
No 240
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.22 E-value=1.8e-11 Score=124.94 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=67.0
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh--
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS-- 1136 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~-- 1136 (1154)
.|||||+++++||++|+.. ||+++||||+++||+.++..+.++|.++. ..+.++|+|||+..
T Consensus 111 ~LS~G~~qrv~laral~~~----p~illlDEP~~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sh~~~~~ 174 (194)
T cd03213 111 GLSGGERKRVSIALELVSN----PSLLFLDEPTSGLDSSSALQVMSLLRRLA------------DTGRTIICSIHQPSSE 174 (194)
T ss_pred cCCHHHHHHHHHHHHHHcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHH------------hCCCEEEEEecCchHH
Confidence 8999999999999999988 99999999999999999999999999983 24678999999964
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
....||+++- +++|+
T Consensus 175 ~~~~~d~v~~--l~~G~ 189 (194)
T cd03213 175 IFELFDKLLL--LSQGR 189 (194)
T ss_pred HHHhcCEEEE--EeCCE
Confidence 4568999954 45553
No 241
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.22 E-value=1.5e-11 Score=132.15 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=68.2
Q ss_pred ccc-cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1056 DME-QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1056 ~~~-~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.+. .|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 147 ~~~~~LSgG~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~g~tii~~tH~ 210 (252)
T CHL00131 147 NVNEGFSGGEKKRNEILQMALLD----SELAILDETDSGLDIDALKIIAEGINKLM------------TSENSIILITHY 210 (252)
T ss_pred ccccCCCHHHHHHHHHHHHHHcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHH------------hCCCEEEEEecC
Confidence 344 5999999999999999988 99999999999999999999999999983 246789999999
Q ss_pred hhHHH-h-ccceEEEeecCCC
Q 036401 1135 DSFYD-K-AEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~-~d~~~GV~~~~~~ 1153 (1154)
..... . ||+++ .+++|+
T Consensus 211 ~~~~~~~~~d~i~--~l~~G~ 229 (252)
T CHL00131 211 QRLLDYIKPDYVH--VMQNGK 229 (252)
T ss_pred HHHHHhhhCCEEE--EEeCCE
Confidence 88776 3 89884 345553
No 242
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.22 E-value=1.5e-11 Score=136.72 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=70.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+..+..+.+.|.++. ...+..+|||||+
T Consensus 160 ~~~~~LSgGq~QRV~LARALa~~----P~ILLlDEPts~LD~~~r~~l~~~L~~l~-----------~~~~~TII~iTHd 224 (382)
T TIGR03415 160 KKPGELSGGMQQRVGLARAFAMD----ADILLMDEPFSALDPLIRTQLQDELLELQ-----------AKLNKTIIFVSHD 224 (382)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCccCCHHHHHHHHHHHHHHH-----------HhcCCEEEEEeCC
Confidence 45678999999999999999988 99999999999999999999999999983 1136789999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... +..||++ +.|.+|+
T Consensus 225 l~e~~~l~DrI--~vl~~G~ 242 (382)
T TIGR03415 225 LDEALKIGNRI--AIMEGGR 242 (382)
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 665 5789999 5566664
No 243
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=2.1e-11 Score=120.19 Aligned_cols=72 Identities=22% Similarity=0.412 Sum_probs=64.9
Q ss_pred CchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHH
Q 036401 1060 LSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYD 1139 (1154)
Q Consensus 1060 lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~ 1139 (1154)
|||||+++++||++++.. ||++|||||+++||+.++..+.++|..+. ..+.++|+|||+.....
T Consensus 81 lS~G~~~r~~l~~~l~~~----~~i~ilDEp~~~lD~~~~~~l~~~l~~~~------------~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 81 LSGGQRQRVALARALLLN----PDLLLLDEPTSGLDPASRERLLELLRELA------------EEGRTVIIVTHDPELAE 144 (157)
T ss_pred CCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCCHHHHH
Confidence 999999999999999998 99999999999999999999999999983 23578999999988776
Q ss_pred -hccceEEE
Q 036401 1140 -KAEALVGV 1147 (1154)
Q Consensus 1140 -~~d~~~GV 1147 (1154)
.||.++-+
T Consensus 145 ~~~d~i~~l 153 (157)
T cd00267 145 LAADRVIVL 153 (157)
T ss_pred HhCCEEEEE
Confidence 46998655
No 244
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.22 E-value=1.5e-11 Score=132.10 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=69.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||+++||||+++||+.++..+.++|.++. ...+..+|+|||+
T Consensus 144 ~~~~~LSgG~~qrv~laral~~~----p~vlllDEP~~~LD~~~~~~l~~~l~~~~-----------~~~~~tii~vsH~ 208 (253)
T TIGR02323 144 DLPRAFSGGMQQRLQIARNLVTR----PRLVFMDEPTGGLDVSVQARLLDLLRGLV-----------RDLGLAVIIVTHD 208 (253)
T ss_pred cCchhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHHH-----------HhcCCEEEEEeCC
Confidence 45779999999999999999988 99999999999999999999999999883 1136789999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++ .+.+|+
T Consensus 209 ~~~~~~~~d~~~--~l~~G~ 226 (253)
T TIGR02323 209 LGVARLLAQRLL--VMQQGR 226 (253)
T ss_pred HHHHHHhcCEEE--EEECCE
Confidence 77665 799984 355554
No 245
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.22 E-value=2e-11 Score=131.67 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~l------------~-~~~tiiivtH~ 221 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVS----PEVILMDEPCSALDPIATAKVEELIDEL------------R-QNYTIVIVTHS 221 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHH------------h-cCCeEEEEEcC
Confidence 45779999999999999999988 9999999999999999999999999999 3 35679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 222 ~~~~~~~~d~v~--~l~~G~ 239 (267)
T PRK14235 222 MQQAARVSQRTA--FFHLGN 239 (267)
T ss_pred HHHHHhhCCEEE--EEECCE
Confidence 7776 5899985 345553
No 246
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=1.5e-11 Score=133.52 Aligned_cols=82 Identities=26% Similarity=0.295 Sum_probs=70.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 140 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~gLD~~~~~~l~~~l~~l~~-----------~~g~tillvtH~ 204 (280)
T PRK13633 140 HAPHLLSGGQKQRVAIAGILAMR----PECIIFDEPTAMLDPSGRREVVNTIKELNK-----------KYGITIILITHY 204 (280)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEecC
Confidence 45689999999999999999998 999999999999999999999999999831 136789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+.+|+
T Consensus 205 ~~~~~~~d~v~--~l~~G~ 221 (280)
T PRK13633 205 MEEAVEADRII--VMDSGK 221 (280)
T ss_pred hHHHhcCCEEE--EEECCE
Confidence 88877899984 445554
No 247
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=2.2e-11 Score=132.15 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 176 ~~~~~LSgGe~qrv~LAraL~~~----p~lLLLDEPts~LD~~~~~~l~~~L~~~------------~-~~~tiii~tH~ 238 (285)
T PRK14254 176 SSGLDLSGGQQQRLCIARAIAPD----PEVILMDEPASALDPVATSKIEDLIEEL------------A-EEYTVVIVTHN 238 (285)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHH------------h-cCCEEEEEeCC
Confidence 45779999999999999999988 9999999999999999999999999999 3 23679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ |.+++|+
T Consensus 239 ~~~i~~~~dri~-v~l~~G~ 257 (285)
T PRK14254 239 MQQAARISDKTA-VFLTGGE 257 (285)
T ss_pred HHHHHhhcCEEE-EEeeCCE
Confidence 7775 5799864 3345554
No 248
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.22 E-value=1.9e-11 Score=128.01 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=67.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. ||++|||||+++||+.++..+.++|.++. ..+.++|+|||+
T Consensus 109 ~~~~~LS~G~~qrv~laral~~~----p~llilDEP~~~LD~~~~~~l~~~l~~~~------------~~~~tvii~sH~ 172 (223)
T TIGR03771 109 RPVGELSGGQRQRVLVARALATR----PSVLLLDEPFTGLDMPTQELLTELFIELA------------GAGTAILMTTHD 172 (223)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------HcCCEEEEEeCC
Confidence 35678999999999999999998 99999999999999999999999999983 346789999999
Q ss_pred hhH-HHhccceE
Q 036401 1135 DSF-YDKAEALV 1145 (1154)
Q Consensus 1135 ~~~-~~~~d~~~ 1145 (1154)
... ...||+++
T Consensus 173 ~~~~~~~~d~i~ 184 (223)
T TIGR03771 173 LAQAMATCDRVV 184 (223)
T ss_pred HHHHHHhCCEEE
Confidence 764 46899986
No 249
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=1.6e-11 Score=137.29 Aligned_cols=83 Identities=20% Similarity=0.222 Sum_probs=71.4
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..|||||+++++||++|+.. |++++||||+++||+..+..+...|.++.+ ..+..+|+|||
T Consensus 144 ~~~~~~LSgGq~QRVaLARAL~~~----P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-----------~~g~tii~vTH 208 (377)
T PRK11607 144 KRKPHQLSGGQRQRVALARSLAKR----PKLLLLDEPMGALDKKLRDRMQLEVVDILE-----------RVGVTCVMVTH 208 (377)
T ss_pred cCChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEcC
Confidence 356789999999999999999998 999999999999999999999999988731 23678999999
Q ss_pred chh-HHHhccceEEEeecCCC
Q 036401 1134 KDS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
+.. .+..||++ +.|++|+
T Consensus 209 d~~ea~~laDri--~vl~~G~ 227 (377)
T PRK11607 209 DQEEAMTMAGRI--AIMNRGK 227 (377)
T ss_pred CHHHHHHhCCEE--EEEeCCE
Confidence 965 56899999 5566665
No 250
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.22 E-value=2.7e-11 Score=125.67 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=70.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+..+..+.++|+++ . .+..+|+|||+
T Consensus 121 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tiii~th~ 183 (207)
T cd03369 121 EGGLNLSQGQRQLLCLARALLKR----PRVLVLDEATASIDYATDALIQKTIREE------------F-TNSTILTIAHR 183 (207)
T ss_pred CCCCcCCHHHHHHHHHHHHHhhC----CCEEEEeCCcccCCHHHHHHHHHHHHHh------------c-CCCEEEEEeCC
Confidence 45779999999999999999987 9999999999999999999999999998 3 46789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
......||+++-+ ++|+
T Consensus 184 ~~~~~~~d~v~~l--~~g~ 200 (207)
T cd03369 184 LRTIIDYDKILVM--DAGE 200 (207)
T ss_pred HHHHhhCCEEEEE--ECCE
Confidence 8877779998644 4553
No 251
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.9e-11 Score=131.83 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=70.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++|||||++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 139 ~~~~~LS~Gq~qrv~laral~~~----p~llllDEPt~gLD~~~~~~l~~~L~~l~~-----------~~~~tiii~tH~ 203 (265)
T PRK10253 139 QSVDTLSGGQRQRAWIAMVLAQE----TAIMLLDEPTTWLDISHQIDLLELLSELNR-----------EKGYTLAAVLHD 203 (265)
T ss_pred CCcccCChHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 46789999999999999999988 999999999999999999999999999831 136789999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. +...||+++- +.+|+
T Consensus 204 ~~~~~~~~d~i~~--l~~G~ 221 (265)
T PRK10253 204 LNQACRYASHLIA--LREGK 221 (265)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 76 5578999954 44553
No 252
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.21 E-value=2.1e-11 Score=128.39 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 139 ~~~~~LS~G~~qrl~laral~~~----p~illlDEP~~gLD~~~~~~~~~~l~~~~------------~~~~tiii~sh~ 202 (226)
T cd03234 139 NLVKGISGGERRRVSIAVQLLWD----PKVLILDEPTSGLDSFTALNLVSTLSQLA------------RRNRIVILTIHQ 202 (226)
T ss_pred ccccCcCHHHHHHHHHHHHHHhC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHH------------HCCCEEEEEecC
Confidence 45779999999999999999988 99999999999999999999999999983 235679999999
Q ss_pred h--hHHHhccceEEEeecCCC
Q 036401 1135 D--SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~--~~~~~~d~~~GV~~~~~~ 1153 (1154)
. .+...||+++ .+.+|+
T Consensus 203 ~~~~~~~~~d~i~--~l~~G~ 221 (226)
T cd03234 203 PRSDLFRLFDRIL--LLSSGE 221 (226)
T ss_pred CCHHHHHhCCEEE--EEeCCE
Confidence 6 6778999985 345554
No 253
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.21 E-value=2.3e-11 Score=123.87 Aligned_cols=90 Identities=27% Similarity=0.361 Sum_probs=73.3
Q ss_pred CCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCC-eeEE
Q 036401 1051 TKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNG-FQSI 1129 (1154)
Q Consensus 1051 ~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~-~q~i 1129 (1154)
....+++..||||||++++||+++++|.+.+|||+|||||+++||+.++..+.++|.++.. ...+ ..+|
T Consensus 101 ~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~----------~~~~~~~ii 170 (198)
T cd03276 101 KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAK----------KQPGRQFIF 170 (198)
T ss_pred cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHh----------cCCCcEEEE
Confidence 3345788999999999999999999888888999999999999999999999999998721 1013 3577
Q ss_pred EEEechhHHHhccceEEEeecC
Q 036401 1130 VISLKDSFYDKAEALVGVYRDS 1151 (1154)
Q Consensus 1130 ~it~~~~~~~~~d~~~GV~~~~ 1151 (1154)
++||+...+...| .+||++..
T Consensus 171 i~th~~~~i~~~d-~v~~~~~~ 191 (198)
T cd03276 171 ITPQDISGLASSD-DVKVFRMK 191 (198)
T ss_pred EECCccccccccc-ceeEEEec
Confidence 7789977776666 46787663
No 254
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.21 E-value=1.5e-11 Score=145.75 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=71.0
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||
T Consensus 398 ~~~~~~LSgG~kqrl~la~al~~~----p~lLlLDEPt~gLD~~~~~~l~~~l~~l~------------~~g~tiIivsH 461 (510)
T PRK15439 398 EQAARTLSGGNQQKVLIAKCLEAS----PQLLIVDEPTRGVDVSARNDIYQLIRSIA------------AQNVAVLFISS 461 (510)
T ss_pred cCccccCCcHHHHHHHHHHHHhhC----CCEEEECCCCcCcChhHHHHHHHHHHHHH------------hCCCEEEEECC
Confidence 456889999999999999999988 99999999999999999999999999993 34667999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++- +.+|+
T Consensus 462 d~~~i~~~~d~i~~--l~~G~ 480 (510)
T PRK15439 462 DLEEIEQMADRVLV--MHQGE 480 (510)
T ss_pred CHHHHHHhCCEEEE--EECCE
Confidence 97666 58999964 44553
No 255
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=2e-11 Score=132.18 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=69.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 133 ~~~~~LS~Gq~qrv~laral~~~----p~llllDEPt~gLD~~~~~~l~~~l~~l~------------~~~~til~vtH~ 196 (275)
T PRK13639 133 KPPHHLSGGQKKRVAIAGILAMK----PEIIVLDEPTSGLDPMGASQIMKLLYDLN------------KEGITIIISTHD 196 (275)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHH------------HCCCEEEEEecC
Confidence 44679999999999999999988 99999999999999999999999999993 236779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 197 ~~~~~~~~d~i~--~l~~G~ 214 (275)
T PRK13639 197 VDLVPVYADKVY--VMSDGK 214 (275)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7765 5899984 445553
No 256
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=2.2e-11 Score=130.83 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=69.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++++.. |+++|||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tii~~sH~ 206 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATS----PKIILLDEPTSALDPISAGKIEETLLGL------------K-DDYTMLLVTRS 206 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCccccCHHHHHHHHHHHHHH------------h-hCCeEEEEECC
Confidence 45779999999999999999987 9999999999999999999999999998 3 34689999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++ .+++|+
T Consensus 207 ~~~~~~~~d~i~--~l~~G~ 224 (252)
T PRK14239 207 MQQASRISDRTG--FFLDGD 224 (252)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 765 56899995 345553
No 257
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.9e-11 Score=132.23 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=70.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. ||++||||||++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 138 ~~~~~LS~G~~qrl~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-----------~~~~tiiivtH~ 202 (269)
T PRK13648 138 YEPNALSGGQKQRVAIAGVLALN----PSVIILDEATSMLDPDARQNLLDLVRKVKS-----------EHNITIISITHD 202 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEecC
Confidence 34679999999999999999998 999999999999999999999999999831 136789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+.+|+
T Consensus 203 ~~~~~~~d~i~--~l~~G~ 219 (269)
T PRK13648 203 LSEAMEADHVI--VMNKGT 219 (269)
T ss_pred chHHhcCCEEE--EEECCE
Confidence 87776799985 345554
No 258
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.9e-11 Score=132.48 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=70.4
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
.+..|||||+++++||.+|+.. |+++|||||+++||+.++..+.++|..+. ...+.++|+|||+.
T Consensus 137 ~~~~LS~G~~qrv~lAraL~~~----p~llllDEPt~~LD~~~~~~l~~~l~~l~-----------~~~g~tiil~sH~~ 201 (277)
T PRK13642 137 EPARLSGGQKQRVAVAGIIALR----PEIIILDESTSMLDPTGRQEIMRVIHEIK-----------EKYQLTVLSITHDL 201 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH-----------HhcCCEEEEEeCCH
Confidence 4679999999999999999998 99999999999999999999999999983 11267899999998
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
..+..||+++ .+++|+
T Consensus 202 ~~~~~~d~i~--~l~~G~ 217 (277)
T PRK13642 202 DEAASSDRIL--VMKAGE 217 (277)
T ss_pred HHHHhCCEEE--EEECCE
Confidence 8777899984 445554
No 259
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=2e-11 Score=131.44 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=70.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|..+.+ ..+.++|+|||+
T Consensus 149 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~L~~~~~-----------~~~~tii~~sH~ 213 (255)
T PRK11300 149 RQAGNLAYGQQRRLEIARCMVTQ----PEILMLDEPAAGLNPKETKELDELIAELRN-----------EHNVTVLLIEHD 213 (255)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCccCCCHHHHHHHHHHHHHHHh-----------hcCCEEEEEeCC
Confidence 55779999999999999999998 999999999999999999999999999831 126789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 214 ~~~~~~~~d~i~~--l~~g~ 231 (255)
T PRK11300 214 MKLVMGISDRIYV--VNQGT 231 (255)
T ss_pred HHHHHHhCCEEEE--EECCe
Confidence 7665 68999854 34553
No 260
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.21 E-value=3.3e-11 Score=123.49 Aligned_cols=85 Identities=28% Similarity=0.404 Sum_probs=71.4
Q ss_pred cccccCchhhHHHHHHHHHHhh--cccCCCCeEEeeccccccchhhHH-HHHHHHHhcccCCCCCCCCCCCCC-CeeEEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSI--HSYKPSPFFILDEVDAALDNLNVA-KVAGFIRSKSCEGTRGNQDADEGN-GFQSIV 1130 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~--~~~~p~~~~~lDE~d~~lD~~~~~-~~~~~l~~~~~~~~~~~~~a~~~~-~~q~i~ 1130 (1154)
..+..|||||+++++||+.+++ .-+.+||+++||||+++||+..+. .+.++|.++. .. +.++|+
T Consensus 111 ~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~------------~~~~~~iii 178 (204)
T cd03240 111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERK------------SQKNFQLIV 178 (204)
T ss_pred cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHH------------hccCCEEEE
Confidence 5688999999999776654443 234679999999999999999999 9999999982 23 678999
Q ss_pred EEechhHHHhccceEEEeecC
Q 036401 1131 ISLKDSFYDKAEALVGVYRDS 1151 (1154)
Q Consensus 1131 it~~~~~~~~~d~~~GV~~~~ 1151 (1154)
|||+...+..||+++.+.+++
T Consensus 179 itH~~~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 179 ITHDEELVDAADHIYRVEKDG 199 (204)
T ss_pred EEecHHHHhhCCEEEEEeeCC
Confidence 999998889999999887776
No 261
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=2e-11 Score=132.18 Aligned_cols=78 Identities=26% Similarity=0.364 Sum_probs=68.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||.+|+.. |+++|||||+++||+.++..+.++|.++. ...+.++|+|||+
T Consensus 136 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~l~-----------~~~~~tilivsH~ 200 (279)
T PRK13635 136 REPHRLSGGQKQRVAIAGVLALQ----PDIIILDEATSMLDPRGRREVLETVRQLK-----------EQKGITVLSITHD 200 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH-----------HcCCCEEEEEecC
Confidence 45679999999999999999998 99999999999999999999999999993 1136789999999
Q ss_pred hhHHHhccceEEE
Q 036401 1135 DSFYDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV 1147 (1154)
...+..||+++-+
T Consensus 201 ~~~~~~~d~i~~l 213 (279)
T PRK13635 201 LDEAAQADRVIVM 213 (279)
T ss_pred HHHHHcCCEEEEE
Confidence 8877789998544
No 262
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.21 E-value=1.9e-11 Score=126.21 Aligned_cols=75 Identities=27% Similarity=0.357 Sum_probs=66.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 125 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sh~ 188 (204)
T PRK13538 125 VPVRQLSAGQQRRVALARLWLTR----APLWILDEPFTAIDKQGVARLEALLAQHA------------EQGGMVILTTHQ 188 (204)
T ss_pred CChhhcCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHH------------HCCCEEEEEecC
Confidence 45779999999999999999998 99999999999999999999999999983 245679999999
Q ss_pred hhHHHhccceE
Q 036401 1135 DSFYDKAEALV 1145 (1154)
Q Consensus 1135 ~~~~~~~d~~~ 1145 (1154)
...+..|+..+
T Consensus 189 ~~~i~~~~~~~ 199 (204)
T PRK13538 189 DLPVASDKVRK 199 (204)
T ss_pred hhhhccCCceE
Confidence 98887666643
No 263
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=2.6e-11 Score=130.55 Aligned_cols=80 Identities=16% Similarity=0.261 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 152 ~~~~~LS~Gq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~------------~-~~~tiii~sH~ 214 (260)
T PRK10744 152 QSGYSLSGGQQQRLCIARGIAIR----PEVLLLDEPCSALDPISTGRIEELITEL------------K-QDYTVVIVTHN 214 (260)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCC----CCEEEEcCCCccCCHHHHHHHHHHHHHH------------h-cCCeEEEEeCC
Confidence 45779999999999999999988 9999999999999999999999999999 3 35679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 215 ~~~~~~~~d~i~--~l~~G~ 232 (260)
T PRK10744 215 MQQAARCSDYTA--FMYLGE 232 (260)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7766 5899985 345554
No 264
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=2.2e-11 Score=132.07 Aligned_cols=82 Identities=27% Similarity=0.368 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++.. ..+..+|++||+
T Consensus 133 ~~~~~LS~Gq~qrl~laraL~~~----p~llilDEPt~gLD~~~~~~l~~~l~~l~~-----------~~g~tvli~tH~ 197 (277)
T PRK13652 133 RVPHHLSGGEKKRVAIAGVIAME----PQVLVLDEPTAGLDPQGVKELIDFLNDLPE-----------TYGMTVIFSTHQ 197 (277)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEecC
Confidence 45679999999999999999998 999999999999999999999999999831 126789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 198 ~~~~~~~~drv~--~l~~G~ 215 (277)
T PRK13652 198 LDLVPEMADYIY--VMDKGR 215 (277)
T ss_pred HHHHHHhCCEEE--EEECCe
Confidence 7765 6999984 455554
No 265
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=2.5e-11 Score=130.65 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |++++|||||++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tiiivtH~ 213 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATN----PDVLLMDEPTSALDPVSTRKIEELILKL------------K-EKYTIVIVTHN 213 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHH------------h-cCCEEEEEEcC
Confidence 45779999999999999999998 9999999999999999999999999999 3 35789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +++|+
T Consensus 214 ~~~~~~~~d~i~~--l~~G~ 231 (259)
T PRK14274 214 MQQAARVSDQTAF--FYMGE 231 (259)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 7665 58999854 45554
No 266
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=2e-11 Score=132.02 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||+++||||+++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 138 ~~~~~LS~G~~qrl~laral~~~----p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-----------~~~~tiii~sH~ 202 (271)
T PRK13632 138 KEPQNLSGGQKQRVAIASVLALN----PEIIIFDESTSMLDPKGKREIKKIMVDLRK-----------TRKKTLISITHD 202 (271)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCcEEEEEEec
Confidence 45679999999999999999988 999999999999999999999999999831 124789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+.+|+
T Consensus 203 ~~~~~~~d~v~--~l~~G~ 219 (271)
T PRK13632 203 MDEAILADKVI--VFSEGK 219 (271)
T ss_pred hhHHhhCCEEE--EEECCE
Confidence 87777899984 455554
No 267
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.21 E-value=2.5e-11 Score=129.41 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcc--cC-CCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHS--YK-PSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~--~~-p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
+.+..|||||+++++||++|+... .. +|+++|||||+++||+.++..+.++|..+. ..+..+|+|
T Consensus 122 ~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~------------~~~~tvi~~ 189 (248)
T PRK03695 122 RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC------------QQGIAVVMS 189 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHH------------hCCCEEEEE
Confidence 457799999999999999998610 11 269999999999999999999999999983 246779999
Q ss_pred Eechh-HHHhccceEEEeecCCC
Q 036401 1132 SLKDS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1132 t~~~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
||+.. +...||+++ .+++|+
T Consensus 190 sH~~~~~~~~~d~i~--~l~~G~ 210 (248)
T PRK03695 190 SHDLNHTLRHADRVW--LLKQGK 210 (248)
T ss_pred ecCHHHHHHhCCEEE--EEECCE
Confidence 99976 557999984 455554
No 268
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.7e-11 Score=129.28 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||+++||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 138 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tiii~tH~ 200 (246)
T PRK14269 138 QNALALSGGQQQRLCIARALAIK----PKLLLLDEPTSALDPISSGVIEELLKEL------------S-HNLSMIMVTHN 200 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHH------------h-CCCEEEEEecC
Confidence 45679999999999999999998 9999999999999999999999999998 3 36789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++-+ .+|+
T Consensus 201 ~~~~~~~~d~i~~l--~~G~ 218 (246)
T PRK14269 201 MQQGKRVADYTAFF--HLGE 218 (246)
T ss_pred HHHHHhhCcEEEEE--ECCE
Confidence 7755 689999544 4553
No 269
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.20 E-value=2e-11 Score=131.02 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++.+ ..+.++|+|||+
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~~~-----------~~~~tiiivsH~ 206 (252)
T TIGR03005 142 HMPAQLSGGQQQRVAIARALAMR----PKVMLFDEVTSALDPELVGEVLNVIRRLAS-----------EHDLTMLLVTHE 206 (252)
T ss_pred cChhhcCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCcEEEEEeCC
Confidence 34678999999999999999987 999999999999999999999999999831 126789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 207 ~~~~~~~~d~i~--~l~~G~ 224 (252)
T TIGR03005 207 MGFAREFADRVC--FFDKGR 224 (252)
T ss_pred HHHHHHhcCEEE--EEECCE
Confidence 7665 6899985 455554
No 270
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.20 E-value=1.7e-11 Score=132.26 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=69.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 146 ~~~~~LSgGe~qrv~laral~~~----p~illLDEPt~~LD~~~~~~l~~~l~~~~~-----------~~g~tiiivsH~ 210 (265)
T TIGR02769 146 KLPRQLSGGQLQRINIARALAVK----PKLIVLDEAVSNLDMVLQAVILELLRKLQQ-----------AFGTAYLFITHD 210 (265)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCcEEEEEeCC
Confidence 45679999999999999999987 999999999999999999999999999831 126779999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++-+ .+|+
T Consensus 211 ~~~~~~~~d~i~~l--~~G~ 228 (265)
T TIGR02769 211 LRLVQSFCQRVAVM--DKGQ 228 (265)
T ss_pred HHHHHHHhcEEEEE--eCCE
Confidence 77765 89999654 4443
No 271
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.6e-11 Score=133.61 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=70.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..||||||++++||++|+.. |++++||||+++||+.+...+.++|..+ . .+.++|+|||+
T Consensus 221 ~~~~~LSgGqkqRl~LARAl~~~----p~IlLLDEPts~LD~~~~~~i~~~i~~l------------~-~~~Tii~iTH~ 283 (329)
T PRK14257 221 KAGNALSGGQQQRLCIARAIALE----PEVLLMDEPTSALDPIATAKIEELILEL------------K-KKYSIIIVTHS 283 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------h-cCCEEEEEeCC
Confidence 45779999999999999999988 9999999999999999999999999998 3 35789999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||++ +.|++|+
T Consensus 284 l~~i~~~~Dri--ivl~~G~ 301 (329)
T PRK14257 284 MAQAQRISDET--VFFYQGW 301 (329)
T ss_pred HHHHHHhCCEE--EEEECCE
Confidence 87765 69999 5667664
No 272
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=2e-11 Score=132.62 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=70.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++|||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 137 ~~~~~LS~G~~qrl~laraL~~~----p~lLilDEPt~gLD~~~~~~l~~~l~~l~~-----------~~g~tillvsH~ 201 (283)
T PRK13636 137 KPTHCLSFGQKKRVAIAGVLVME----PKVLVLDEPTAGLDPMGVSEIMKLLVEMQK-----------ELGLTIIIATHD 201 (283)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEecC
Confidence 56889999999999999999988 999999999999999999999999999931 126789999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++ .+.+|+
T Consensus 202 ~~~~~~~~dri~--~l~~G~ 219 (283)
T PRK13636 202 IDIVPLYCDNVF--VMKEGR 219 (283)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 77764 899984 445553
No 273
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.20 E-value=2.1e-11 Score=130.79 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=69.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|..+.+ ..+..+|+|||+
T Consensus 136 ~~~~~LS~Gq~qrv~laral~~~----p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~-----------~~g~til~~sH~ 200 (254)
T PRK10418 136 LYPFEMSGGMLQRMMIALALLCE----APFIIADEPTTDLDVVAQARILDLLESIVQ-----------KRALGMLLVTHD 200 (254)
T ss_pred cCCcccCHHHHHHHHHHHHHhcC----CCEEEEeCCCcccCHHHHHHHHHHHHHHHH-----------hcCcEEEEEecC
Confidence 45779999999999999999988 999999999999999999999999999831 136789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 201 ~~~~~~~~d~v~--~l~~G~ 218 (254)
T PRK10418 201 MGVVARLADDVA--VMSHGR 218 (254)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7766 5899984 445553
No 274
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.5e-11 Score=130.16 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||.+|+.. |+++|||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 144 ~~~~~LS~G~~qrl~laral~~~----p~llllDEP~~gLD~~~~~~l~~~l~~~------------~-~~~tiiivsH~ 206 (252)
T PRK14256 144 SNAMELSGGQQQRLCIARTIAVK----PEVILMDEPASALDPISTLKIEELIEEL------------K-EKYTIIIVTHN 206 (252)
T ss_pred CCcCcCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHH------------H-hCCcEEEEECC
Confidence 35779999999999999999987 9999999999999999999999999999 3 34689999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 207 ~~~~~~~~d~i~~--l~~G~ 224 (252)
T PRK14256 207 MQQAARVSDYTAF--FYMGD 224 (252)
T ss_pred HHHHHhhCCEEEE--EECCE
Confidence 7665 68999953 45554
No 275
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.20 E-value=2.2e-11 Score=128.77 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=67.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++. ...+.++|+|||+
T Consensus 127 ~~~~~LS~G~~qrv~la~al~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~-----------~~~~~tii~~sH~ 191 (230)
T TIGR03410 127 RRGGDLSGGQQQQLAIARALVTR----PKLLLLDEPTEGIQPSIIKDIGRVIRRLR-----------AEGGMAILLVEQY 191 (230)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCcccCCHHHHHHHHHHHHHHH-----------HcCCcEEEEEeCC
Confidence 45778999999999999999988 99999999999999999999999999983 1126789999999
Q ss_pred hhHHH-hccceEEE
Q 036401 1135 DSFYD-KAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV 1147 (1154)
...+. .||+++-+
T Consensus 192 ~~~~~~~~d~v~~l 205 (230)
T TIGR03410 192 LDFARELADRYYVM 205 (230)
T ss_pred HHHHHHhCCEEEEE
Confidence 77665 79998543
No 276
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=2.2e-11 Score=132.32 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=71.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||.+|+.. |+++|||||+++||+.++..+.+.|.++.. ..+.++|+|||+
T Consensus 139 ~~~~~LS~G~~qrv~laral~~~----P~llllDEPt~gLD~~~~~~l~~~l~~l~~-----------~~g~tvli~tH~ 203 (282)
T PRK13640 139 SEPANLSGGQKQRVAIAGILAVE----PKIIILDESTSMLDPAGKEQILKLIRKLKK-----------KNNLTVISITHD 203 (282)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEecC
Confidence 45689999999999999999998 999999999999999999999999999831 136789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+.+|+
T Consensus 204 ~~~~~~~d~i~--~l~~G~ 220 (282)
T PRK13640 204 IDEANMADQVL--VLDDGK 220 (282)
T ss_pred HHHHHhCCEEE--EEECCE
Confidence 88888999985 445554
No 277
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.7e-11 Score=145.47 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=71.1
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|..+. ..+..+|+|||
T Consensus 400 ~~~~~~LSgG~kqrv~lA~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~------------~~g~tvi~~sH 463 (506)
T PRK13549 400 ELAIARLSGGNQQKAVLAKCLLLN----PKILILDEPTRGIDVGAKYEIYKLINQLV------------QQGVAIIVISS 463 (506)
T ss_pred ccccccCCHHHHHHHHHHHHHhhC----CCEEEEcCCCCCcCHhHHHHHHHHHHHHH------------HCCCEEEEECC
Confidence 356789999999999999999988 99999999999999999999999999993 24667999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++ .+.+|+
T Consensus 464 d~~~~~~~~d~v~--~l~~G~ 482 (506)
T PRK13549 464 ELPEVLGLSDRVL--VMHEGK 482 (506)
T ss_pred CHHHHHHhCCEEE--EEECCE
Confidence 96655 5899984 556664
No 278
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.8e-11 Score=130.09 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++|||||+++||+.++..+.++|+++ . .+.++|+|||+
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tiii~sH~ 206 (252)
T PRK14272 144 TPATGLSGGQQQRLCIARALAVE----PEILLMDEPTSALDPASTARIEDLMTDL------------K-KVTTIIIVTHN 206 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHH------------h-cCCeEEEEeCC
Confidence 45789999999999999999998 9999999999999999999999999998 3 35789999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++ .+.+|+
T Consensus 207 ~~~~~~~~d~i~--~l~~G~ 224 (252)
T PRK14272 207 MHQAARVSDTTS--FFLVGD 224 (252)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 77665 899984 445553
No 279
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.20 E-value=2.5e-11 Score=133.07 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=69.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|..+ . .+.++|++||+
T Consensus 129 ~~~~~LS~G~~qrv~la~al~~~----p~lliLDEPt~gLD~~~~~~l~~~l~~~------------~-~~~tiii~sH~ 191 (301)
T TIGR03522 129 KKIGQLSKGYRQRVGLAQALIHD----PKVLILDEPTTGLDPNQLVEIRNVIKNI------------G-KDKTIILSTHI 191 (301)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHh------------c-CCCEEEEEcCC
Confidence 45779999999999999999998 9999999999999999999999999999 3 35789999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. +...||+++ .+++|+
T Consensus 192 l~~~~~~~d~i~--~l~~G~ 209 (301)
T TIGR03522 192 MQEVEAICDRVI--IINKGK 209 (301)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 76 556899994 455554
No 280
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.4e-11 Score=129.47 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|..+. ..+..+|++||+
T Consensus 133 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~g~tiii~sH~ 196 (241)
T PRK10895 133 SMGQSLSGGERRRVEIARALAAN----PKFILLDEPFAGVDPISVIDIKRIIEHLR------------DSGLGVLITDHN 196 (241)
T ss_pred cchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHH------------hcCCEEEEEEcC
Confidence 45679999999999999999987 99999999999999999999999999983 246779999999
Q ss_pred hh-HHHhccceEEEeecCCC
Q 036401 1135 DS-FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~-~~~~~d~~~GV~~~~~~ 1153 (1154)
.. +...||+++- +.+|+
T Consensus 197 ~~~~~~~~d~v~~--l~~G~ 214 (241)
T PRK10895 197 VRETLAVCERAYI--VSQGH 214 (241)
T ss_pred HHHHHHhcCEEEE--EeCCe
Confidence 75 5568999854 45554
No 281
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.8e-11 Score=130.90 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++||||||++||+..+..+.++|.++ . .+..+|+|||+
T Consensus 160 ~~~~~LSgGq~qrl~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tiii~tH~ 222 (268)
T PRK14248 160 SSALSLSGGQQQRLCIARTLAMK----PAVLLLDEPASALDPISNAKIEELITEL------------K-EEYSIIIVTHN 222 (268)
T ss_pred cCcccCCHHHHHHHHHHHHHhCC----CCEEEEcCCCcccCHHHHHHHHHHHHHH------------h-cCCEEEEEEeC
Confidence 45789999999999999999987 9999999999999999999999999999 3 24679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 223 ~~~~~~~~d~v~--~l~~G~ 240 (268)
T PRK14248 223 MQQALRVSDRTA--FFLNGD 240 (268)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7654 6899984 455554
No 282
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=3.6e-11 Score=130.04 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=68.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 157 ~~~~~LSgGq~qrv~LAraL~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~------------~-~~~tiii~sH~ 219 (274)
T PRK14265 157 EKGTALSGGQQQRLCIARAIAMK----PDVLLMDEPCSALDPISTRQVEELCLEL------------K-EQYTIIMVTHN 219 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHhhC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------h-cCCEEEEEeCC
Confidence 45779999999999999999988 9999999999999999999999999999 3 35679999999
Q ss_pred hhHH-HhccceEEEe
Q 036401 1135 DSFY-DKAEALVGVY 1148 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~ 1148 (1154)
...+ ..||+++-+.
T Consensus 220 ~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 220 MQQASRVADWTAFFN 234 (274)
T ss_pred HHHHHHhCCEEEEEe
Confidence 7655 6899997553
No 283
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=3.3e-11 Score=130.01 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=67.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 150 ~~~~~LS~G~~qrl~laral~~~----p~lllLDEPt~gLD~~~~~~l~~~l~~~------------~-~~~tiiivtH~ 212 (269)
T PRK14259 150 ESGYSLSGGQQQRLCIARTIAIE----PEVILMDEPCSALDPISTLKIEETMHEL------------K-KNFTIVIVTHN 212 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHH------------h-cCCEEEEEeCC
Confidence 45789999999999999999988 9999999999999999999999999998 2 34679999999
Q ss_pred hhHH-HhccceEEE
Q 036401 1135 DSFY-DKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV 1147 (1154)
...+ ..||+++-+
T Consensus 213 ~~~~~~~~d~i~~l 226 (269)
T PRK14259 213 MQQAVRVSDMTAFF 226 (269)
T ss_pred HHHHHHhcCEEEEE
Confidence 7555 699998543
No 284
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.20 E-value=2.7e-11 Score=111.00 Aligned_cols=89 Identities=22% Similarity=0.334 Sum_probs=74.4
Q ss_pred eecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCC
Q 036401 1046 TAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNG 1125 (1154)
Q Consensus 1046 ~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 1125 (1154)
+..|.....+.+..|||||||++||++-|-.- |.+++|||||++||+.|...+-+||..+. ..++
T Consensus 120 ~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~----P~ILLLDE~TsALD~~nkr~ie~mi~~~v-----------~~q~ 184 (223)
T COG4619 120 FALPDSILTKNITELSGGEKQRIALIRNLQFM----PKILLLDEITSALDESNKRNIEEMIHRYV-----------REQN 184 (223)
T ss_pred cCCchhhhcchhhhccchHHHHHHHHHHhhcC----CceEEecCchhhcChhhHHHHHHHHHHHh-----------hhhc
Confidence 33444445577899999999999999999887 99999999999999999999999999984 2356
Q ss_pred eeEEEEEech-hHHHhccceEEEee
Q 036401 1126 FQSIVISLKD-SFYDKAEALVGVYR 1149 (1154)
Q Consensus 1126 ~q~i~it~~~-~~~~~~d~~~GV~~ 1149 (1154)
.-++-|||++ ..+..||+++-|..
T Consensus 185 vAv~WiTHd~dqa~rha~k~itl~~ 209 (223)
T COG4619 185 VAVLWITHDKDQAIRHADKVITLQP 209 (223)
T ss_pred eEEEEEecChHHHhhhhheEEEecc
Confidence 7799999985 55899999976643
No 285
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.8e-11 Score=130.06 Aligned_cols=80 Identities=14% Similarity=0.283 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tiii~sH~ 207 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMK----PKILLMDEPTANIDPVGTAKIEELLFEL------------K-KEYTIVLVTHS 207 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHH------------h-hCCEEEEEECC
Confidence 45789999999999999999987 9999999999999999999999999999 3 34789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 208 ~~~~~~~~d~i~--~l~~G~ 225 (253)
T PRK14267 208 PAQAARVSDYVA--FLYLGK 225 (253)
T ss_pred HHHHHhhCCEEE--EEECCE
Confidence 7765 5899984 345554
No 286
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3e-11 Score=129.51 Aligned_cols=80 Identities=14% Similarity=0.225 Sum_probs=69.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 143 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~L~~~------------~-~~~tiiivsH~ 205 (251)
T PRK14270 143 KSALKLSGGQQQRLCIARTIAVK----PDVILMDEPTSALDPISTLKIEDLMVEL------------K-KEYTIVIVTHN 205 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------H-hCCeEEEEEcC
Confidence 45779999999999999999987 9999999999999999999999999998 3 24789999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++- +++|+
T Consensus 206 ~~~~~~~~d~v~~--l~~G~ 223 (251)
T PRK14270 206 MQQASRVSDYTAF--FLMGD 223 (251)
T ss_pred HHHHHHhcCEEEE--EECCe
Confidence 766 468999954 45554
No 287
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.19 E-value=2.1e-11 Score=119.23 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=72.2
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..+.+.+||.|..|.+.+.-.+.+. |.++|||||++||||+|++.+.+++.++. ..+..+||.|
T Consensus 124 ~~~kIk~LSKGnqQKIQfisaviHe----PeLlILDEPFSGLDPVN~elLk~~I~~lk------------~~GatIifSs 187 (300)
T COG4152 124 KTKKIKELSKGNQQKIQFISAVIHE----PELLILDEPFSGLDPVNVELLKDAIFELK------------EEGATIIFSS 187 (300)
T ss_pred ccchHHHhhhhhhHHHHHHHHHhcC----CCEEEecCCccCCChhhHHHHHHHHHHHH------------hcCCEEEEec
Confidence 4467889999999999999999988 99999999999999999999999999995 3566799999
Q ss_pred echhHHH-hccceEEEeecCCC
Q 036401 1133 LKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1133 ~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
|+.+-++ .||++ +-+..|+
T Consensus 188 H~Me~vEeLCD~l--lmL~kG~ 207 (300)
T COG4152 188 HRMEHVEELCDRL--LMLKKGQ 207 (300)
T ss_pred chHHHHHHHhhhh--heecCCc
Confidence 9977665 99998 4455554
No 288
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3.4e-11 Score=129.11 Aligned_cols=80 Identities=15% Similarity=0.261 Sum_probs=69.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tiii~sH~ 204 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVE----PEVLLMDEPTSALDPISTLKIEELIQEL------------K-KDYTIVIVTHN 204 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHH------------h-cCCeEEEEEeC
Confidence 45779999999999999999998 9999999999999999999999999998 3 35689999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +++|+
T Consensus 205 ~~~~~~~~d~v~~--l~~G~ 222 (250)
T PRK14240 205 MQQASRISDKTAF--FLNGE 222 (250)
T ss_pred HHHHHhhCCEEEE--EECCE
Confidence 7754 68999853 44443
No 289
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.19 E-value=8.4e-05 Score=94.41 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 821 DITRWKEEMRGWKSNSDECEKEIQEWEKQASAATTSLSKLNRQINSKEAQIEQLISRKQEIMEK 884 (1154)
Q Consensus 821 ~i~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 884 (1154)
+.......+.++...+..+...+..+...+.++..++.....++..++.+..++..+..+++..
T Consensus 1237 e~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1237 ENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444455555555555555555555555555555666666655555555443
No 290
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3.5e-11 Score=129.04 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 143 ~~~~~LS~Gq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tilivsh~ 205 (251)
T PRK14249 143 KSGLALSGGQQQRLCIARVLAIE----PEVILMDEPCSALDPVSTMRIEELMQEL------------K-QNYTIAIVTHN 205 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHH------------h-cCCEEEEEeCC
Confidence 56789999999999999999988 9999999999999999999999999998 3 35679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 206 ~~~~~~~~d~i~--~l~~G~ 223 (251)
T PRK14249 206 MQQAARASDWTG--FLLTGD 223 (251)
T ss_pred HHHHHhhCCEEE--EEeCCe
Confidence 7665 5789995 445543
No 291
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.19 E-value=2.9e-11 Score=125.89 Aligned_cols=77 Identities=26% Similarity=0.280 Sum_probs=68.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 133 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sH~ 196 (214)
T PRK13543 133 TLVRQLSAGQKKRLALARLWLSP----APLWLLDEPYANLDLEGITLVNRMISAHL------------RGGGAALVTTHG 196 (214)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------hCCCEEEEEecC
Confidence 45679999999999999999988 99999999999999999999999999883 346779999999
Q ss_pred hhHH-HhccceEEE
Q 036401 1135 DSFY-DKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV 1147 (1154)
...+ ..||+++-+
T Consensus 197 ~~~~~~~~~~i~~l 210 (214)
T PRK13543 197 AYAAPPVRTRMLTL 210 (214)
T ss_pred hhhhhhhcceEEEE
Confidence 7655 699998754
No 292
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.19 E-value=4.8e-11 Score=123.50 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=68.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHH-HHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAG-FIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~-~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
..+..|||||+++++||++|+.. |++++||||+++||+.+...+.+ ++..+. ..+..+|+|||
T Consensus 123 ~~~~~lS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~ll~~~~------------~~~~tvi~~sh 186 (204)
T cd03250 123 EKGINLSGGQKQRISLARAVYSD----ADIYLLDDPLSAVDAHVGRHIFENCILGLL------------LNNKTRILVTH 186 (204)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHHhc------------cCCCEEEEEeC
Confidence 34678999999999999999998 99999999999999999999988 466662 24678999999
Q ss_pred chhHHHhccceEEEeecCCC
Q 036401 1134 KDSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~~~~d~~~GV~~~~~~ 1153 (1154)
+...+..||+++ .+.+|+
T Consensus 187 ~~~~~~~~d~i~--~l~~G~ 204 (204)
T cd03250 187 QLQLLPHADQIV--VLDNGR 204 (204)
T ss_pred CHHHHhhCCEEE--EEeCCC
Confidence 988887799984 456554
No 293
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.19 E-value=4.5e-11 Score=125.19 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=68.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHH--HHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAG--FIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~--~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..+..|||||+++++||.+|+.. |+++||||||++||+.++..+.+ ++..+ ...+..+|+||
T Consensus 136 ~~~~~LS~G~~qrv~laral~~~----p~illlDEPt~~LD~~~~~~l~~~~ll~~~------------~~~~~tii~~s 199 (218)
T cd03290 136 ERGINLSGGQRQRICVARALYQN----TNIVFLDDPFSALDIHLSDHLMQEGILKFL------------QDDKRTLVLVT 199 (218)
T ss_pred cCCCcCCHHHHHHHHHHHHHhhC----CCEEEEeCCccccCHHHHHHHHHHHHHHHH------------hcCCCEEEEEe
Confidence 35779999999999999999998 99999999999999999999998 67666 23467899999
Q ss_pred echhHHHhccceEEEeecCC
Q 036401 1133 LKDSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1133 ~~~~~~~~~d~~~GV~~~~~ 1152 (1154)
|+...+..||++ +.+.+|
T Consensus 200 H~~~~~~~~d~i--~~l~~G 217 (218)
T cd03290 200 HKLQYLPHADWI--IAMKDG 217 (218)
T ss_pred CChHHHhhCCEE--EEecCC
Confidence 998888889988 445555
No 294
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3.3e-11 Score=129.20 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=69.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 145 ~~~~~LS~Gq~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tiiiisH~ 207 (251)
T PRK14244 145 DSAFELSGGQQQRLCIARAIAVK----PTMLLMDEPCSALDPVATNVIENLIQEL------------K-KNFTIIVVTHS 207 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHH------------h-cCCeEEEEeCC
Confidence 45779999999999999999987 9999999999999999999999999998 3 36789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 208 ~~~~~~~~d~i~--~l~~G~ 225 (251)
T PRK14244 208 MKQAKKVSDRVA--FFQSGR 225 (251)
T ss_pred HHHHHhhcCEEE--EEECCE
Confidence 7765 5899985 344553
No 295
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.19 E-value=2.7e-11 Score=126.92 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=71.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||+++||||+++||+..+..+.++|..+.+ ..+..+|+|||+
T Consensus 137 ~~~~~lS~G~~qrv~laral~~~----p~illlDEP~~~LD~~~~~~l~~~l~~~~~-----------~~~~tii~~sh~ 201 (220)
T TIGR02982 137 YYPHNLSGGQKQRVAIARALVHR----PKLVLADEPTAALDSKSGRDVVELMQKLAR-----------EQGCTILIVTHD 201 (220)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEeCC
Confidence 34568999999999999999988 999999999999999999999999999831 136789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||++ +.+.+|+
T Consensus 202 ~~~~~~~d~v--~~l~~g~ 218 (220)
T TIGR02982 202 NRILDVADRI--VHMEDGK 218 (220)
T ss_pred HHHHhhCCEE--EEEECCE
Confidence 8888899998 4556664
No 296
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.19 E-value=2.7e-11 Score=124.66 Aligned_cols=89 Identities=22% Similarity=0.282 Sum_probs=75.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCC-CCeeEEEEE
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEG-NGFQSIVIS 1132 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~-~~~q~i~it 1132 (1154)
..++..||||||+++.++.+||++.+.+||+++||||+++||+.++..+.++|..+. .. .+.++|+||
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~-----------~~~g~~~viiit 189 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETA-----------CKEGTSQYFLIT 189 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHh-----------hcCCCceEEEEc
Confidence 356789999999999999999988888999999999999999999999999999983 11 236899999
Q ss_pred ech-hHHHhccceEEEeecCCC
Q 036401 1133 LKD-SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1133 ~~~-~~~~~~d~~~GV~~~~~~ 1153 (1154)
|+. ..+..||+++-+...+|+
T Consensus 190 h~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 190 PKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred hhhccCCcccCceEEEEEecCc
Confidence 984 666788887777777776
No 297
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.19 E-value=3.2e-11 Score=128.85 Aligned_cols=81 Identities=10% Similarity=0.138 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+..+..+.++|.++. ..+.++|+|||+
T Consensus 139 ~~~~~LS~Gq~qrv~Laral~~~----p~iLlLDEPt~gLD~~~~~~l~~~L~~~~------------~~g~tiIiisH~ 202 (264)
T PRK13546 139 QPVKKYSSGMRAKLGFSINITVN----PDILVIDEALSVGDQTFAQKCLDKIYEFK------------EQNKTIFFVSHN 202 (264)
T ss_pred CCcccCCHHHHHHHHHHHHHhhC----CCEEEEeCccccCCHHHHHHHHHHHHHHH------------HCCCEEEEEcCC
Confidence 35679999999999999999987 99999999999999999999999999983 346789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 203 ~~~i~~~~d~i~--~l~~G~ 220 (264)
T PRK13546 203 LGQVRQFCTKIA--WIEGGK 220 (264)
T ss_pred HHHHHHHcCEEE--EEECCE
Confidence 7665 5899984 455553
No 298
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.19 E-value=2.8e-11 Score=124.56 Aligned_cols=75 Identities=29% Similarity=0.399 Sum_probs=64.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 121 ~~~~~LS~G~~qrl~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~g~tiii~sH~ 184 (201)
T cd03231 121 RPVAQLSAGQQRRVALARLLLSG----RPLWILDEPTTALDKAGVARFAEAMAGHC------------ARGGMVVLTTHQ 184 (201)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEEecC
Confidence 45678999999999999999988 99999999999999999999999999883 246679999998
Q ss_pred hh-HHHhccceE
Q 036401 1135 DS-FYDKAEALV 1145 (1154)
Q Consensus 1135 ~~-~~~~~d~~~ 1145 (1154)
.. ....+++++
T Consensus 185 ~~~~~~~~~~~~ 196 (201)
T cd03231 185 DLGLSEAGAREL 196 (201)
T ss_pred chhhhhccceeE
Confidence 54 445777764
No 299
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3.4e-11 Score=130.95 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=69.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+..+..+.++|.++ . .+..+|+|||+
T Consensus 178 ~~~~~LSgGq~qrv~LAraL~~~----p~lllLDEPt~gLD~~~~~~l~~~L~~~------------~-~~~tvIivsH~ 240 (286)
T PRK14275 178 KNALGLSGGQQQRLCVARTLAVE----PEILLLDEPTSALDPKATAKIEDLIQEL------------R-GSYTIMIVTHN 240 (286)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHH------------h-cCCeEEEEeCC
Confidence 45789999999999999999998 9999999999999999999999999998 2 34679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 241 ~~~~~~~~d~i~--~L~~G~ 258 (286)
T PRK14275 241 MQQASRVSDYTM--FFYEGV 258 (286)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7765 5899995 345554
No 300
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.19 E-value=2.5e-11 Score=143.82 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=71.1
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..||||||++++||++|+.. |++++|||||++||+.++..+.++|.++. ..+..+|+|||
T Consensus 130 ~~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~------------~~g~tvii~tH 193 (490)
T PRK10938 130 DRRFKYLSTGETRKTLLCQALMSE----PDLLILDEPFDGLDVASRQQLAELLASLH------------QSGITLVLVLN 193 (490)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHH------------hcCCeEEEEeC
Confidence 467889999999999999999988 99999999999999999999999999993 24567999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++- +++|+
T Consensus 194 ~~~~~~~~~d~v~~--l~~G~ 212 (490)
T PRK10938 194 RFDEIPDFVQFAGV--LADCT 212 (490)
T ss_pred CHHHHHhhCCEEEE--EECCE
Confidence 97665 58999953 45554
No 301
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.19 E-value=2.5e-11 Score=144.48 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=70.8
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..+++..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+||
T Consensus 403 ~~~~~~~LSgGq~qrv~lAral~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~l~------------~~g~tvi~vs 466 (510)
T PRK09700 403 VNQNITELSGGNQQKVLISKWLCCC----PEVIIFDEPTRGIDVGAKAEIYKVMRQLA------------DDGKVILMVS 466 (510)
T ss_pred ccCccccCChHHHHHHHHHHHHhcC----CCEEEECCCCCCcCHHHHHHHHHHHHHHH------------HCCCEEEEEc
Confidence 3467889999999999999999987 99999999999999999999999999983 2466799999
Q ss_pred echhHH-HhccceEEEeecCCC
Q 036401 1133 LKDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1133 ~~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
|+...+ ..||+++- +.+|+
T Consensus 467 Hd~~~~~~~~d~i~~--l~~G~ 486 (510)
T PRK09700 467 SELPEIITVCDRIAV--FCEGR 486 (510)
T ss_pred CCHHHHHhhCCEEEE--EECCE
Confidence 996655 58999854 44553
No 302
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.19 E-value=2.4e-11 Score=131.06 Aligned_cols=78 Identities=22% Similarity=0.272 Sum_probs=68.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 147 ~~~~~LS~Ge~qrl~laral~~~----p~lllLDEPt~~LD~~~~~~~~~~l~~~~~-----------~~~~tiiivsH~ 211 (268)
T PRK10419 147 KRPPQLSGGQLQRVCLARALAVE----PKLLILDEAVSNLDLVLQAGVIRLLKKLQQ-----------QFGTACLFITHD 211 (268)
T ss_pred CCCccCChHHHHHHHHHHHHhcC----CCEEEEeCCCcccCHHHHHHHHHHHHHHHH-----------HcCcEEEEEECC
Confidence 45779999999999999999988 999999999999999999999999999831 136789999999
Q ss_pred hhHHH-hccceEEE
Q 036401 1135 DSFYD-KAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV 1147 (1154)
...+. .||+++-+
T Consensus 212 ~~~i~~~~d~i~~l 225 (268)
T PRK10419 212 LRLVERFCQRVMVM 225 (268)
T ss_pred HHHHHHhCCEEEEE
Confidence 77765 89998644
No 303
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.18 E-value=2.1e-11 Score=127.73 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=74.0
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
...+|++|||||||++.||.++|.. |.++|-||||.+||..-...+.++|++|.+ .-++-++|||
T Consensus 151 l~~yPHeLSGGqRQRVMIAMALan~----P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~-----------~~gMa~lfIT 215 (534)
T COG4172 151 LDAYPHELSGGQRQRVMIAMALANE----PDLLIADEPTTALDVTVQAQILDLLKELQA-----------ELGMAILFIT 215 (534)
T ss_pred hhhCCcccCcchhhHHHHHHHHcCC----CCeEeecCCcchhhhhhHHHHHHHHHHHHH-----------HhCcEEEEEe
Confidence 3468999999999999999999998 999999999999999999999999999952 2477799999
Q ss_pred echhHHH-hccceEEEeecCCC
Q 036401 1133 LKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1133 ~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
|+..++. +||++| | |..|+
T Consensus 216 HDL~iVr~~ADrV~-V-M~~G~ 235 (534)
T COG4172 216 HDLGIVRKFADRVY-V-MQHGE 235 (534)
T ss_pred ccHHHHHHhhhhEE-E-EeccE
Confidence 9998886 899997 3 55553
No 304
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=3.5e-11 Score=129.20 Aligned_cols=80 Identities=15% Similarity=0.291 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 144 ~~~~~LS~Gq~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tii~vsH~ 206 (252)
T PRK14255 144 ESALSLSGGQQQRVCIARVLAVK----PDVILLDEPTSALDPISSTQIENMLLEL------------R-DQYTIILVTHS 206 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHH------------H-hCCEEEEEECC
Confidence 45789999999999999999998 9999999999999999999999999999 3 24789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 207 ~~~~~~~~d~i~--~l~~G~ 224 (252)
T PRK14255 207 MHQASRISDKTA--FFLTGN 224 (252)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7765 5899984 445554
No 305
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.18 E-value=2.5e-11 Score=143.88 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=70.5
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||++|+.. |+++||||||++||+.++..+.++|..+. ..+..+|+|||
T Consensus 390 ~~~~~~LSgGekqrv~lA~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~------------~~g~tviivtH 453 (501)
T PRK10762 390 EQAIGLLSGGNQQKVAIARGLMTR----PKVLILDEPTRGVDVGAKKEIYQLINQFK------------AEGLSIILVSS 453 (501)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhC----CCEEEEcCCCCCCCHhHHHHHHHHHHHHH------------HCCCEEEEEcC
Confidence 356789999999999999999987 99999999999999999999999999993 24667999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++ .+.+|+
T Consensus 454 d~~~~~~~~d~v~--~l~~G~ 472 (501)
T PRK10762 454 EMPEVLGMSDRIL--VMHEGR 472 (501)
T ss_pred CHHHHHhhCCEEE--EEECCE
Confidence 96655 5899985 445553
No 306
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.18 E-value=2.8e-11 Score=134.97 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=73.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..||+||+|+++||.+++.. +.++|||||||+|++.-+..++++++.+.++|. -+|+|||+
T Consensus 141 ~~v~~LsiaqrQ~VeIArAl~~~----arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv------------~ii~ISHr 204 (500)
T COG1129 141 TLVGDLSIAQRQMVEIARALSFD----ARVLILDEPTAALTVKETERLFDLIRRLKAQGV------------AIIYISHR 204 (500)
T ss_pred hhhhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCC------------EEEEEcCc
Confidence 56889999999999999999998 999999999999999999999999999975555 49999999
Q ss_pred -hhHHHhccceEEEeecCCC
Q 036401 1135 -DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 -~~~~~~~d~~~GV~~~~~~ 1153 (1154)
.+++..||++ +-|++|+
T Consensus 205 l~Ei~~i~Dri--tVlRDG~ 222 (500)
T COG1129 205 LDEVFEIADRI--TVLRDGR 222 (500)
T ss_pred HHHHHHhcCEE--EEEeCCE
Confidence 7999999999 5677775
No 307
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=3.8e-11 Score=128.77 Aligned_cols=76 Identities=16% Similarity=0.316 Sum_probs=67.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 142 ~~~~~LS~Gq~qr~~la~al~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tili~sH~ 204 (250)
T PRK14262 142 KPGTRLSGGQQQRLCIARALAVE----PEVILLDEPTSALDPIATQRIEKLLEEL------------S-ENYTIVIVTHN 204 (250)
T ss_pred CChhhcCHHHHHHHHHHHHHhCC----CCEEEEeCCccccCHHHHHHHHHHHHHH------------h-cCcEEEEEeCC
Confidence 46789999999999999999998 9999999999999999999999999999 3 35789999999
Q ss_pred hhH-HHhccceEEE
Q 036401 1135 DSF-YDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV 1147 (1154)
... ...||+++-+
T Consensus 205 ~~~~~~~~d~i~~l 218 (250)
T PRK14262 205 IGQAIRIADYIAFM 218 (250)
T ss_pred HHHHHHhCCEEEEE
Confidence 774 5689999543
No 308
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.18 E-value=3.9e-11 Score=129.85 Aligned_cols=75 Identities=23% Similarity=0.280 Sum_probs=66.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||+++||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 138 ~~~~~LSgG~~qrv~laraL~~~----p~llllDEPt~~LD~~~~~~l~~~L~~~~------------~~g~tviivsH~ 201 (272)
T PRK15056 138 RQIGELSGGQKKRVFLARAIAQQ----GQVILLDEPFTGVDVKTEARIISLLRELR------------DEGKTMLVSTHN 201 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHH------------hCCCEEEEEeCC
Confidence 56789999999999999999987 99999999999999999999999999983 246679999999
Q ss_pred hhH-HHhccceE
Q 036401 1135 DSF-YDKAEALV 1145 (1154)
Q Consensus 1135 ~~~-~~~~d~~~ 1145 (1154)
... ...||+++
T Consensus 202 ~~~~~~~~d~v~ 213 (272)
T PRK15056 202 LGSVTEFCDYTV 213 (272)
T ss_pred HHHHHHhCCEEE
Confidence 755 46899874
No 309
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.9e-11 Score=148.03 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=71.2
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++.+ ..+..+|||||
T Consensus 458 ~~~~~~LSgGqrQRv~iAraL~~~----p~llllDEPts~LD~~~~~~i~~ll~~l~~-----------~~g~tvi~isH 522 (623)
T PRK10261 458 WRYPHEFSGGQRQRICIARALALN----PKVIIADEAVSALDVSIRGQIINLLLDLQR-----------DFGIAYLFISH 522 (623)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeC
Confidence 356889999999999999999998 999999999999999999999999999831 13567999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++ .|++|+
T Consensus 523 dl~~v~~~~dri~--vl~~G~ 541 (623)
T PRK10261 523 DMAVVERISHRVA--VMYLGQ 541 (623)
T ss_pred CHHHHHHhCCEEE--EEECCE
Confidence 97665 5899984 455664
No 310
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=4e-11 Score=128.47 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=69.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tii~~sh~ 203 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAME----PDVILMDEPTSALDPIATHKIEELMEEL------------K-KNYTIVIVTHS 203 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCccCCHHHHHHHHHHHHHH------------h-cCCeEEEEecC
Confidence 45779999999999999999988 9999999999999999999999999999 3 24789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 204 ~~~~~~~~d~i~~--l~~G~ 221 (249)
T PRK14253 204 MQQARRISDRTAF--FLMGE 221 (249)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 7764 57999853 44443
No 311
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.18 E-value=4.8e-11 Score=127.82 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=70.2
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...|||||+++++||++|+.. |+++|||||+++||+.++..+.+.|.++ . .+.++|+|||+..
T Consensus 136 g~~LS~G~~qrl~LaRall~~----p~illlDEpts~LD~~~~~~l~~~l~~~------------~-~~~tii~isH~~~ 198 (275)
T cd03289 136 GCVLSHGHKQLMCLARSVLSK----AKILLLDEPSAHLDPITYQVIRKTLKQA------------F-ADCTVILSEHRIE 198 (275)
T ss_pred CCCCCHHHHHHHHHHHHHhcC----CCEEEEECccccCCHHHHHHHHHHHHHh------------c-CCCEEEEEECCHH
Confidence 458999999999999999998 9999999999999999999999999987 3 4678999999988
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ +.|++|+
T Consensus 199 ~i~~~dri--~vl~~G~ 213 (275)
T cd03289 199 AMLECQRF--LVIEENK 213 (275)
T ss_pred HHHhCCEE--EEecCCe
Confidence 88889998 5566665
No 312
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.18 E-value=2.3e-11 Score=145.39 Aligned_cols=83 Identities=23% Similarity=0.248 Sum_probs=71.1
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..||||||++++||++|+.. |++++|||||++||+.++..+.++|.++.+ ..+..+|+|||
T Consensus 151 ~~~~~~LSgGe~qrv~iAraL~~~----p~llllDEPt~~LD~~~~~~l~~~l~~l~~-----------~~g~tvi~vtH 215 (529)
T PRK15134 151 TDYPHQLSGGERQRVMIAMALLTR----PELLIADEPTTALDVSVQAQILQLLRELQQ-----------ELNMGLLFITH 215 (529)
T ss_pred hhCCcccCHHHHHHHHHHHHHhcC----CCEEEEcCCCCccCHHHHHHHHHHHHHHHH-----------hcCCeEEEEcC
Confidence 356889999999999999999988 999999999999999999999999999831 12567999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++ .+++|+
T Consensus 216 d~~~~~~~~dri~--~l~~G~ 234 (529)
T PRK15134 216 NLSIVRKLADRVA--VMQNGR 234 (529)
T ss_pred cHHHHHHhcCEEE--EEECCE
Confidence 97665 5899995 455654
No 313
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.18 E-value=3.1e-11 Score=130.18 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=68.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++|||||++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~g~tvii~tH~ 212 (262)
T PRK09984 148 QRVSTLSGGQQQRVAIARALMQQ----AKVILADEPIASLDPESARIVMDTLRDINQ-----------NDGITVVVTLHQ 212 (262)
T ss_pred CCccccCHHHHHHHHHHHHHhcC----CCEEEecCccccCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEeCC
Confidence 45779999999999999999988 999999999999999999999999999831 135789999999
Q ss_pred hhH-HHhccceEEE
Q 036401 1135 DSF-YDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV 1147 (1154)
... ...||+++-+
T Consensus 213 ~~~~~~~~d~i~~l 226 (262)
T PRK09984 213 VDYALRYCERIVAL 226 (262)
T ss_pred HHHHHHhCCEEEEE
Confidence 775 6789998644
No 314
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.18 E-value=4.2e-11 Score=129.36 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 163 ~~~~~LSgGe~qrv~laraL~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tiiivsH~ 225 (271)
T PRK14238 163 DNAYGLSGGQQQRLCIARCLAIE----PDVILMDEPTSALDPISTLKVEELVQEL------------K-KDYSIIIVTHN 225 (271)
T ss_pred cCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCCcCCHHHHHHHHHHHHHH------------H-cCCEEEEEEcC
Confidence 45779999999999999999987 9999999999999999999999999999 3 35789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 226 ~~~i~~~~d~i~--~l~~G~ 243 (271)
T PRK14238 226 MQQAARISDKTA--FFLNGY 243 (271)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7765 5899984 345553
No 315
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.18 E-value=1.2e-11 Score=121.37 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=90.5
Q ss_pred HHHHHHhhcCCCCCCCceEEEeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeec
Q 036401 1010 DRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDE 1089 (1154)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE 1089 (1154)
..+|+.||+.+|..+|+...-.-...........+++......+.+....|||||+|++|||++|... |.+++|||
T Consensus 87 R~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~----PklLLLDE 162 (237)
T COG0410 87 RRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR----PKLLLLDE 162 (237)
T ss_pred ccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC----CCEEEecC
Confidence 45899999999887554332110000000111222333333345577889999999999999999999 99999999
Q ss_pred cccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHH-HhccceEEEeecCCC
Q 036401 1090 VDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1090 ~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
|+.||-|.-+..+++.|+++.+ ..+..+++|-.+-.+. +.||+.|- |..|+
T Consensus 163 Ps~GLaP~iv~~I~~~i~~l~~-----------~~g~tIlLVEQn~~~Al~iaDr~yv--le~Gr 214 (237)
T COG0410 163 PSEGLAPKIVEEIFEAIKELRK-----------EGGMTILLVEQNARFALEIADRGYV--LENGR 214 (237)
T ss_pred CccCcCHHHHHHHHHHHHHHHH-----------cCCcEEEEEeccHHHHHHhhCEEEE--EeCCE
Confidence 9999999999999999999942 1245799999995554 69999873 45553
No 316
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=3.9e-11 Score=128.73 Aligned_cols=80 Identities=15% Similarity=0.286 Sum_probs=69.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 143 ~~~~~LS~Gq~qr~~laral~~~----p~llllDEP~~~LD~~~~~~l~~~l~~~------------~-~~~tiiiisH~ 205 (251)
T PRK14251 143 RNAQAFSGGQQQRICIARALAVR----PKVVLLDEPTSALDPISSSEIEETLMEL------------K-HQYTFIMVTHN 205 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEecCCCccCCHHHHHHHHHHHHHH------------H-cCCeEEEEECC
Confidence 45779999999999999999987 9999999999999999999999999998 2 34779999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+.+|+
T Consensus 206 ~~~~~~~~d~i~--~l~~G~ 223 (251)
T PRK14251 206 LQQAGRISDQTA--FLMNGD 223 (251)
T ss_pred HHHHHhhcCEEE--EEECCE
Confidence 8765 5799984 455554
No 317
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.18 E-value=2.2e-11 Score=124.36 Aligned_cols=66 Identities=26% Similarity=0.376 Sum_probs=59.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 123 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~~LD~~~~~~~~~~l~~~~------------~~~~tili~sH~ 186 (190)
T TIGR01166 123 RPTHCLSGGEKKRVAIAGAVAMR----PDVLLLDEPTAGLDPAGREQMLAILRRLR------------AEGMTVVISTHD 186 (190)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHH------------HcCCEEEEEeec
Confidence 34679999999999999999987 99999999999999999999999999983 246689999999
Q ss_pred hh
Q 036401 1135 DS 1136 (1154)
Q Consensus 1135 ~~ 1136 (1154)
..
T Consensus 187 ~~ 188 (190)
T TIGR01166 187 VD 188 (190)
T ss_pred cc
Confidence 65
No 318
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.18 E-value=2.8e-11 Score=143.59 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=70.9
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||
T Consensus 391 ~~~~~~LSgGq~qrl~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~------------~~g~tviivsH 454 (501)
T PRK11288 391 EQLIMNLSGGNQQKAILGRWLSED----MKVILLDEPTRGIDVGAKHEIYNVIYELA------------AQGVAVLFVSS 454 (501)
T ss_pred cCccccCCHHHHHHHHHHHHHccC----CCEEEEcCCCCCCCHhHHHHHHHHHHHHH------------hCCCEEEEECC
Confidence 466889999999999999999988 99999999999999999999999999993 34667999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++-+ .+|+
T Consensus 455 d~~~~~~~~d~i~~l--~~g~ 473 (501)
T PRK11288 455 DLPEVLGVADRIVVM--REGR 473 (501)
T ss_pred CHHHHHhhCCEEEEE--ECCE
Confidence 97666 589999644 4443
No 319
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.17 E-value=3.6e-11 Score=127.85 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=67.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 116 ~~~~~LSgGq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-----------~~g~tiiivsH~ 180 (251)
T PRK09544 116 APMQKLSGGETQRVLLARALLNR----PQLLVLDEPTQGVDVNGQVALYDLIDQLRR-----------ELDCAVLMVSHD 180 (251)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-----------hcCCEEEEEecC
Confidence 45779999999999999999987 999999999999999999999999999831 126779999999
Q ss_pred hhHH-HhccceEEE
Q 036401 1135 DSFY-DKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV 1147 (1154)
...+ ..||+++-+
T Consensus 181 ~~~i~~~~d~i~~l 194 (251)
T PRK09544 181 LHLVMAKTDEVLCL 194 (251)
T ss_pred HHHHHHhCCEEEEE
Confidence 7765 689998644
No 320
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.17 E-value=5.4e-11 Score=128.11 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=67.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 147 ~~~~~LSgGq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~------------~-~~~tvi~vtH~ 209 (264)
T PRK14243 147 QSGLSLSGGQQQRLCIARAIAVQ----PEVILMDEPCSALDPISTLRIEELMHEL------------K-EQYTIIIVTHN 209 (264)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHH------------h-cCCEEEEEecC
Confidence 45779999999999999999988 9999999999999999999999999999 3 24689999999
Q ss_pred hhH-HHhccceEEE
Q 036401 1135 DSF-YDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV 1147 (1154)
... ...||+++-+
T Consensus 210 ~~~~~~~~d~v~~l 223 (264)
T PRK14243 210 MQQAARVSDMTAFF 223 (264)
T ss_pred HHHHHHhCCEEEEE
Confidence 655 5699999644
No 321
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.17 E-value=3.8e-11 Score=129.04 Aligned_cols=86 Identities=22% Similarity=0.330 Sum_probs=69.7
Q ss_pred cccccCchhhHHHHHHHHHHhh-----cccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSI-----HSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSI 1129 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~-----~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i 1129 (1154)
+.+..|||||+++++||++|+. .--.+|++++||||+++||+.++..+.++|.++.+ ..+..+|
T Consensus 141 ~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tvi 209 (272)
T PRK13547 141 RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLAR-----------DWNLGVL 209 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-----------hcCCEEE
Confidence 5678999999999999999994 01123999999999999999999999999999831 1267799
Q ss_pred EEEechhHH-HhccceEEEeecCCC
Q 036401 1130 VISLKDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1130 ~it~~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+|||+...+ ..||+++-+ .+|+
T Consensus 210 iisH~~~~~~~~~d~i~~l--~~G~ 232 (272)
T PRK13547 210 AIVHDPNLAARHADRIAML--ADGA 232 (272)
T ss_pred EEECCHHHHHHhCCEEEEE--ECCe
Confidence 999997766 589999644 4443
No 322
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.17 E-value=3.1e-11 Score=143.42 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=70.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|..+. ..+..+|+|||+
T Consensus 399 ~~~~~LSgGqkqrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~------------~~g~tviivsHd 462 (500)
T TIGR02633 399 LPIGRLSGGNQQKAVLAKMLLTN----PRVLILDEPTRGVDVGAKYEIYKLINQLA------------QEGVAIIVVSSE 462 (500)
T ss_pred CccccCCHHHHHHHHHHHHHhhC----CCEEEEcCCCCCcCHhHHHHHHHHHHHHH------------hCCCEEEEECCC
Confidence 56789999999999999999988 99999999999999999999999999993 346679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 463 ~~~~~~~~d~v~~--l~~G~ 480 (500)
T TIGR02633 463 LAEVLGLSDRVLV--IGEGK 480 (500)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 7666 58999964 34553
No 323
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.17 E-value=3.4e-11 Score=143.66 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=70.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |++++|||||++||+.++..+.++|.++.+ ..+..+|+|||+
T Consensus 164 ~~~~~LSgGq~qrv~iA~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-----------~~g~tviivtHd 228 (520)
T TIGR03269 164 HIARDLSGGEKQRVVLARQLAKE----PFLFLADEPTGTLDPQTAKLVHNALEEAVK-----------ASGISMVLTSHW 228 (520)
T ss_pred cCcccCCHHHHHHHHHHHHHhcC----CCEEEeeCCcccCCHHHHHHHHHHHHHHHH-----------hcCcEEEEEeCC
Confidence 56789999999999999999988 999999999999999999999999999831 135679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 229 ~~~~~~~~d~i~--~l~~G~ 246 (520)
T TIGR03269 229 PEVIEDLSDKAI--WLENGE 246 (520)
T ss_pred HHHHHHhcCEEE--EEeCCE
Confidence 8776 5899994 455654
No 324
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.17 E-value=3.6e-11 Score=124.41 Aligned_cols=77 Identities=31% Similarity=0.280 Sum_probs=68.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+..+..+.++|.++. ..+..+|+|||+
T Consensus 123 ~~~~~LS~G~~qrl~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sH~ 186 (207)
T PRK13539 123 LPFGYLSAGQKRRVALARLLVSN----RPIWILDEPTAALDAAAVALFAELIRAHL------------AQGGIVIAATHI 186 (207)
T ss_pred CChhhcCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCC
Confidence 34678999999999999999998 99999999999999999999999999983 246679999999
Q ss_pred hhHHHhccceEEEe
Q 036401 1135 DSFYDKAEALVGVY 1148 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~ 1148 (1154)
...+.. |+++.+.
T Consensus 187 ~~~~~~-~~~~~~~ 199 (207)
T PRK13539 187 PLGLPG-ARELDLG 199 (207)
T ss_pred chhhcc-CcEEeec
Confidence 887776 9988774
No 325
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=4.8e-11 Score=128.41 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=67.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++.. ..+.++|+|||+
T Consensus 146 ~~~~~LSgGq~qrv~laral~~~----p~vllLDEP~~~LD~~~~~~l~~~l~~l~~-----------~~~~tiiivsH~ 210 (261)
T PRK14258 146 KSALDLSGGQQQRLCIARALAVK----PKVLLMDEPCFGLDPIASMKVESLIQSLRL-----------RSELTMVIVSHN 210 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCCccCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEECC
Confidence 45779999999999999999987 999999999999999999999999999831 136789999999
Q ss_pred hhHH-HhccceEE
Q 036401 1135 DSFY-DKAEALVG 1146 (1154)
Q Consensus 1135 ~~~~-~~~d~~~G 1146 (1154)
...+ ..||+++-
T Consensus 211 ~~~i~~~~d~i~~ 223 (261)
T PRK14258 211 LHQVSRLSDFTAF 223 (261)
T ss_pred HHHHHHhcCEEEE
Confidence 7665 58999854
No 326
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.17 E-value=3.7e-11 Score=142.81 Aligned_cols=81 Identities=19% Similarity=0.301 Sum_probs=70.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 137 ~~~~~LSgG~~qrv~iA~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~------------~~g~tviiitHd 200 (500)
T TIGR02633 137 RPVGDYGGGQQQLVEIAKALNKQ----ARLLILDEPSSSLTEKETEILLDIIRDLK------------AHGVACVYISHK 200 (500)
T ss_pred CchhhCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEEeCc
Confidence 45789999999999999999998 99999999999999999999999999993 346679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 201 ~~~~~~~~d~i~--~l~~G~ 218 (500)
T TIGR02633 201 LNEVKAVCDTIC--VIRDGQ 218 (500)
T ss_pred HHHHHHhCCEEE--EEeCCe
Confidence 7665 5899995 455554
No 327
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.17 E-value=4.9e-11 Score=145.16 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=70.3
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||++||++|.-. ||++||||||++||+.+...+.+.|.++ . ++.++|+|||+..
T Consensus 483 G~~LSGGQrQRialARAll~~----~~IliLDE~TSaLD~~te~~i~~~l~~~------------~-~~~TvIiItHrl~ 545 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQP----CQLLLLDEPTASLDAHSEQLVMQALNAA------------S-RRQTTLMVTHQLE 545 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHH------------h-CCCEEEEEecChH
Confidence 447999999999999999887 9999999999999999999999999998 3 6788999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||+++ .+++|+
T Consensus 546 ~i~~aD~Ii--vl~~G~ 560 (588)
T PRK11174 546 DLAQWDQIW--VMQDGQ 560 (588)
T ss_pred HHHhCCEEE--EEeCCe
Confidence 999999995 455654
No 328
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.17 E-value=3.4e-11 Score=142.62 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=70.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++.+||||||++++||++|+.. |+++||||||++||+.++..+.++|..+. ..+..+|+|||
T Consensus 386 ~~~~~~LSgGq~qrv~la~al~~~----p~illLDEPt~gLD~~~~~~~~~~l~~l~------------~~~~tvi~vsH 449 (491)
T PRK10982 386 RTQIGSLSGGNQQKVIIGRWLLTQ----PEILMLDEPTRGIDVGAKFEIYQLIAELA------------KKDKGIIIISS 449 (491)
T ss_pred ccccccCCcHHHHHHHHHHHHhcC----CCEEEEcCCCcccChhHHHHHHHHHHHHH------------HCCCEEEEECC
Confidence 356789999999999999999988 99999999999999999999999999983 34667999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++- +.+|+
T Consensus 450 d~~~~~~~~d~v~~--l~~g~ 468 (491)
T PRK10982 450 EMPELLGITDRILV--MSNGL 468 (491)
T ss_pred ChHHHHhhCCEEEE--EECCE
Confidence 96655 58999954 45554
No 329
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=4.4e-11 Score=126.55 Aligned_cols=82 Identities=22% Similarity=0.262 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++++.. |++++||||+++||+.++..+..+|+++. ...+..+|++||+
T Consensus 125 ~~~~~LS~G~~qrl~laral~~~----p~llllDEPt~gLD~~~~~~l~~~l~~~~-----------~~~~~tili~tH~ 189 (235)
T cd03299 125 RKPETLSGGEQQRVAIARALVVN----PKILLLDEPFSALDVRTKEKLREELKKIR-----------KEFGVTVLHVTHD 189 (235)
T ss_pred cCcccCCHHHHHHHHHHHHHHcC----CCEEEECCCcccCCHHHHHHHHHHHHHHH-----------HhcCCEEEEEecC
Confidence 34578999999999999999998 99999999999999999999999999983 1126789999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++ .+..|+
T Consensus 190 ~~~~~~~~d~i~--~l~~G~ 207 (235)
T cd03299 190 FEEAWALADKVA--IMLNGK 207 (235)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 765 56899984 445553
No 330
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=5.2e-11 Score=128.77 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=69.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . ...++|+|||+
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~----p~lllLDEPt~~LD~~~~~~l~~~L~~~------------~-~~~tiiivsH~ 221 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVN----PEVLLLDEPTSALDPTTTEKIEEFIRSL------------A-DRLTVIIVTHN 221 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHH------------h-cCCEEEEEeCC
Confidence 45779999999999999999987 9999999999999999999999999998 3 24789999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++ .+.+|+
T Consensus 222 ~~~~~~~~dri~--~l~~G~ 239 (276)
T PRK14271 222 LAQAARISDRAA--LFFDGR 239 (276)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 765 46899984 445553
No 331
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.16 E-value=6e-11 Score=127.33 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=69.8
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|..+ . .+..+|+|||+.
T Consensus 153 ~~~~LS~G~~qrl~laral~~~----p~llllDEPt~gLD~~~~~~l~~~l~~~------------~-~~~tiii~sh~~ 215 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRK----SSILIMDEATASIDMATENILQKVVMTA------------F-ADRTVVTIAHRV 215 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHh------------c-CCCEEEEEecCh
Confidence 4678999999999999999987 9999999999999999999999999988 3 467899999998
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
..+..||+++ .+.+|+
T Consensus 216 ~~~~~~dri~--~l~~G~ 231 (257)
T cd03288 216 STILDADLVL--VLSRGI 231 (257)
T ss_pred HHHHhCCEEE--EEECCE
Confidence 8888899994 455554
No 332
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=5.9e-11 Score=130.25 Aligned_cols=81 Identities=16% Similarity=0.274 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|+++ . .+.++|+|||+
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~----p~lLLLDEPtsgLD~~~~~~l~~~L~~~------------~-~~~tiiivtH~ 258 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVD----PEVILMDEPASALDPIATSKIEDLIEEL------------A-EEYTVVVVTHN 258 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------h-cCCEEEEEEcC
Confidence 45789999999999999999998 9999999999999999999999999999 3 24789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++.+ +++|+
T Consensus 259 ~~~i~~~~d~i~~~-l~~G~ 277 (305)
T PRK14264 259 MQQAARISDQTAVF-LTGGE 277 (305)
T ss_pred HHHHHHhcCEEEEE-ecCCE
Confidence 7665 689986423 44443
No 333
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.16 E-value=2.5e-11 Score=145.05 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=70.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 421 ~~~~~LSgG~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~~-----------~~~~tvi~vsHd 485 (529)
T PRK15134 421 RYPAEFSGGQRQRIAIARALILK----PSLIILDEPTSSLDKTVQAQILALLKSLQQ-----------KHQLAYLFISHD 485 (529)
T ss_pred cCCccCCHHHHHHHHHHHHHhCC----CCEEEeeCCccccCHHHHHHHHHHHHHHHH-----------hhCCEEEEEeCC
Confidence 56789999999999999999988 999999999999999999999999999831 125679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 486 ~~~~~~~~d~i~--~l~~G~ 503 (529)
T PRK15134 486 LHVVRALCHQVI--VLRQGE 503 (529)
T ss_pred HHHHHHhcCeEE--EEECCE
Confidence 7665 5899995 455664
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.16 E-value=4.5e-11 Score=141.58 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||.+|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 130 ~~~~~LSgGq~qrv~lA~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~------------~~g~tvii~tH~ 193 (491)
T PRK10982 130 AKVATLSVSQMQMIEIAKAFSYN----AKIVIMDEPTSSLTEKEVNHLFTIIRKLK------------ERGCGIVYISHK 193 (491)
T ss_pred CchhhCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEEecC
Confidence 45789999999999999999988 99999999999999999999999999983 346679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 194 ~~~~~~~~d~i~--~l~~G~ 211 (491)
T PRK10982 194 MEEIFQLCDEIT--ILRDGQ 211 (491)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7665 5899985 455554
No 335
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.6e-11 Score=130.82 Aligned_cols=79 Identities=22% Similarity=0.372 Sum_probs=72.0
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
....|||||++|.+||++|-.+ +|+.+|||||.|||+.+-..++..|.+. . .+..+|+|||+.
T Consensus 471 ~G~~LSGGE~rRLAlAR~LL~d----apl~lLDEPTegLD~~TE~~vL~ll~~~------------~-~~kTll~vTHrL 533 (573)
T COG4987 471 GGRRLSGGERRRLALARALLHD----APLWLLDEPTEGLDPITERQVLALLFEH------------A-EGKTLLMVTHRL 533 (573)
T ss_pred CCCcCCchHHHHHHHHHHHHcC----CCeEEecCCcccCChhhHHHHHHHHHHH------------h-cCCeEEEEeccc
Confidence 3568999999999999999887 9999999999999999999999999988 3 578899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.-.+.||++ +.|++|+
T Consensus 534 ~~le~~drI--ivl~~Gk 549 (573)
T COG4987 534 RGLERMDRI--IVLDNGK 549 (573)
T ss_pred ccHhhcCEE--EEEECCe
Confidence 999999999 5577775
No 336
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=5.5e-11 Score=127.63 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=69.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|..+ . .+.++|++||+
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEP~~gLD~~~~~~l~~~l~~~------------~-~~~tvii~sh~ 207 (253)
T PRK14261 145 DSALSLSGGQQQRLCIARTLAVN----PEVILMDEPCSALDPIATAKIEDLIEDL------------K-KEYTVIIVTHN 207 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------h-hCceEEEEEcC
Confidence 45779999999999999999998 9999999999999999999999999999 3 34789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 208 ~~~~~~~~d~v~--~l~~G~ 225 (253)
T PRK14261 208 MQQAARVSDYTG--FMYLGK 225 (253)
T ss_pred HHHHHhhCCEEE--EEECCE
Confidence 7665 5899985 345553
No 337
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.16 E-value=4.6e-11 Score=141.72 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 136 ~~~~~LSgG~~qrv~la~aL~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~------------~~g~tiiivtHd 199 (510)
T PRK15439 136 SSAGSLEVADRQIVEILRGLMRD----SRILILDEPTASLTPAETERLFSRIRELL------------AQGVGIVFISHK 199 (510)
T ss_pred CChhhCCHHHHHHHHHHHHHHcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCC
Confidence 56789999999999999999988 99999999999999999999999999993 246679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +++|+
T Consensus 200 ~~~~~~~~d~i~~--l~~G~ 217 (510)
T PRK15439 200 LPEIRQLADRISV--MRDGT 217 (510)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 7665 58999854 45553
No 338
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.16 E-value=5.1e-11 Score=141.36 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 136 ~~~~~LSgGq~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~~------------~~g~tiiiitHd 199 (501)
T PRK11288 136 TPLKYLSIGQRQMVEIAKALARN----ARVIAFDEPTSSLSAREIEQLFRVIRELR------------AEGRVILYVSHR 199 (501)
T ss_pred CchhhCCHHHHHHHHHHHHHHhC----CCEEEEcCCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEEeCC
Confidence 56789999999999999999998 99999999999999999999999999983 346679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 200 ~~~~~~~~d~i~--~l~~G~ 217 (501)
T PRK11288 200 MEEIFALCDAIT--VFKDGR 217 (501)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7665 5899984 445553
No 339
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.15 E-value=6.4e-11 Score=127.80 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 159 ~~~~~LS~G~~qrl~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tiii~tH~ 221 (267)
T PRK14237 159 KSALTLSGGQQQRLCIARAIAVK----PDILLMDEPASALDPISTMQLEETMFEL------------K-KNYTIIIVTHN 221 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------h-cCCEEEEEecC
Confidence 45779999999999999999998 9999999999999999999999999999 3 35789999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++- +++|+
T Consensus 222 ~~~~~~~~d~i~~--l~~G~ 239 (267)
T PRK14237 222 MQQAARASDYTAF--FYLGD 239 (267)
T ss_pred HHHHHHhcCEEEE--EECCE
Confidence 765 478999854 44543
No 340
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=6.1e-11 Score=121.95 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=66.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. ||++|||||+++||+..+..+.++|.++.+ ..+..+|++||+
T Consensus 114 ~~~~~LS~Ge~qrl~laral~~~----p~llllDEPt~~LD~~~~~~~~~~l~~~~~-----------~~~~t~ii~~~h 178 (202)
T cd03233 114 EFVRGISGGERKRVSIAEALVSR----ASVLCWDNSTRGLDSSTALEILKCIRTMAD-----------VLKTTTFVSLYQ 178 (202)
T ss_pred cchhhCCHHHHHHHHHHHHHhhC----CCEEEEcCCCccCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEEcC
Confidence 45779999999999999999998 999999999999999999999999999831 124566666554
Q ss_pred --hhHHHhccceEEEeecCCC
Q 036401 1135 --DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 --~~~~~~~d~~~GV~~~~~~ 1153 (1154)
..+...||+++ .+.+|+
T Consensus 179 ~~~~~~~~~d~i~--~l~~G~ 197 (202)
T cd03233 179 ASDEIYDLFDKVL--VLYEGR 197 (202)
T ss_pred CHHHHHHhCCeEE--EEECCE
Confidence 35667999984 445554
No 341
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.15 E-value=4.9e-11 Score=141.95 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=70.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+.+||||||++++||.+|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||
T Consensus 140 ~~~~~~LSgG~~qrv~ia~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~------------~~g~tiiivsH 203 (510)
T PRK09700 140 DEKVANLSISHKQMLEIAKTLMLD----AKVIIMDEPTSSLTNKEVDYLFLIMNQLR------------KEGTAIVYISH 203 (510)
T ss_pred ccchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEEeC
Confidence 456889999999999999999988 99999999999999999999999999993 24667999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++- +++|+
T Consensus 204 d~~~~~~~~d~v~~--l~~G~ 222 (510)
T PRK09700 204 KLAEIRRICDRYTV--MKDGS 222 (510)
T ss_pred CHHHHHHhCCEEEE--EECCE
Confidence 97665 58999854 44553
No 342
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.15 E-value=5.9e-11 Score=144.38 Aligned_cols=77 Identities=32% Similarity=0.409 Sum_probs=69.3
Q ss_pred ccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhH
Q 036401 1058 EQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSF 1137 (1154)
Q Consensus 1058 ~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~ 1137 (1154)
..||||||||++||++|.-. ||+++|||||++||+.+...+.+.|..+ . ++..+|+|||+..+
T Consensus 468 ~~LSgGqrQRiaLARall~~----~~illLDEpts~LD~~~~~~i~~~L~~~------------~-~~~tiIiitH~~~~ 530 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKD----APILILDEATSALDNESERLVQAALERL------------M-QGRTTLVIAHRLST 530 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcC----CCEEEEeCccccCCHHHHHHHHHHHHHH------------h-CCCEEEEEehhhHH
Confidence 57999999999999999877 9999999999999999999999999998 3 67889999999999
Q ss_pred HHhccceEEEeecCCC
Q 036401 1138 YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1138 ~~~~d~~~GV~~~~~~ 1153 (1154)
+..||.++ .+++|+
T Consensus 531 ~~~~D~ii--~l~~g~ 544 (571)
T TIGR02203 531 IEKADRIV--VMDDGR 544 (571)
T ss_pred HHhCCEEE--EEeCCE
Confidence 99999995 345553
No 343
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.15 E-value=4.3e-11 Score=144.89 Aligned_cols=83 Identities=23% Similarity=0.231 Sum_probs=71.8
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..|||||||+++||.+|+.. |+++||||||++||+.++..+.++|+++.. ..+..+|+|||
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~----P~lLllDEPt~~LD~~~~~~l~~ll~~l~~-----------~~g~tvi~itH 227 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCR----PAVLIADEPTTALDVTIQAQILQLIKVLQK-----------EMSMGVIFITH 227 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCC----CCEEEEeCCCCccCHHHHHHHHHHHHHHHH-----------hcCCEEEEEcC
Confidence 356889999999999999999998 999999999999999999999999999931 12567999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||++ +.|++|+
T Consensus 228 dl~~~~~~adri--~vl~~G~ 246 (623)
T PRK10261 228 DMGVVAEIADRV--LVMYQGE 246 (623)
T ss_pred CHHHHHHhCCEE--EEeeCCe
Confidence 97665 689999 5566665
No 344
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.15 E-value=6.3e-11 Score=128.22 Aligned_cols=80 Identities=18% Similarity=0.294 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 164 ~~~~~LS~Gq~qrv~laral~~~----p~lllLDEPt~gLD~~~~~~l~~~L~~~------------~-~~~tiiivtH~ 226 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIAIE----PEVLLLDEPTSALDPISTLKIEELITEL------------K-SKYTIVIVTHN 226 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHCC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------H-hCCeEEEEeCC
Confidence 45779999999999999999987 9999999999999999999999999999 3 35679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 227 ~~~~~~~~d~i~--~l~~G~ 244 (272)
T PRK14236 227 MQQAARVSDYTA--FMYMGK 244 (272)
T ss_pred HHHHHhhCCEEE--EEECCE
Confidence 7765 5899984 445554
No 345
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=5.1e-11 Score=141.51 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=70.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 139 ~~~~~LSgGqkqrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~------------~~~~tvi~~tH~ 202 (506)
T PRK13549 139 TPVGNLGLGQQQLVEIAKALNKQ----ARLLILDEPTASLTESETAVLLDIIRDLK------------AHGIACIYISHK 202 (506)
T ss_pred cchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCc
Confidence 56789999999999999999988 99999999999999999999999999993 245679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +++|+
T Consensus 203 ~~~~~~~~d~v~~--l~~G~ 220 (506)
T PRK13549 203 LNEVKAISDTICV--IRDGR 220 (506)
T ss_pred HHHHHHhcCEEEE--EECCE
Confidence 7665 58999953 45553
No 346
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.15 E-value=7.9e-11 Score=123.76 Aligned_cols=80 Identities=24% Similarity=0.284 Sum_probs=68.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||.+|+.. -.+|+++|||||+++||+..+..+.++|..+. ..+..+|+|||+
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~-~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~------------~~g~tvIiitH~ 231 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKR-STGKTLYILDEPTTGLHFHDVKKLLEVLQRLV------------DKGNTVVVIEHN 231 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcC-CCCCcEEEEECCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEEeCC
Confidence 45779999999999999999864 12368999999999999999999999999983 346679999999
Q ss_pred hhHHHhccceEEE
Q 036401 1135 DSFYDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV 1147 (1154)
..++..||.++-+
T Consensus 232 ~~~i~~aD~ii~L 244 (261)
T cd03271 232 LDVIKCADWIIDL 244 (261)
T ss_pred HHHHHhCCEEEEe
Confidence 9888999988543
No 347
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.15 E-value=5.5e-11 Score=141.07 Aligned_cols=82 Identities=21% Similarity=0.237 Sum_probs=70.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..||||||++++||++|+.. |++++|||||++||+.++..+.++|.++. ..+..+|+|||
T Consensus 136 ~~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~l~------------~~~~tvii~sH 199 (501)
T PRK10762 136 DKLVGELSIGEQQMVEIAKVLSFE----SKVIIMDEPTDALTDTETESLFRVIRELK------------SQGRGIVYISH 199 (501)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcCCCCHHHHHHHHHHHHHHH------------HCCCEEEEEeC
Confidence 356789999999999999999988 99999999999999999999999999983 24567999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+...+ ..||+++-+ ++|+
T Consensus 200 d~~~~~~~~d~i~~l--~~G~ 218 (501)
T PRK10762 200 RLKEIFEICDDVTVF--RDGQ 218 (501)
T ss_pred CHHHHHHhCCEEEEE--eCCE
Confidence 97665 589999644 4553
No 348
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=5.7e-11 Score=125.54 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=69.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. ||++|||||+++||+.++..+.++|.++.. ..+.++|++||+
T Consensus 126 ~~~~~lS~G~~qrl~laral~~~----p~llllDEP~~gLD~~~~~~l~~~l~~~~~-----------~~~~tiii~sh~ 190 (232)
T cd03300 126 RKPSQLSGGQQQRVAIARALVNE----PKVLLLDEPLGALDLKLRKDMQLELKRLQK-----------ELGITFVFVTHD 190 (232)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHH-----------HcCCEEEEEeCC
Confidence 34579999999999999999998 999999999999999999999999999831 126789999999
Q ss_pred hhH-HHhccceEEEeecCCC
Q 036401 1135 DSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
... ...||+++- +.+|+
T Consensus 191 ~~~~~~~~d~i~~--l~~G~ 208 (232)
T cd03300 191 QEEALTMSDRIAV--MNKGK 208 (232)
T ss_pred HHHHHHhcCEEEE--EECCE
Confidence 775 568999853 34443
No 349
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.14 E-value=6.1e-11 Score=125.66 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=69.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCC-CeeEEEEEe
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGN-GFQSIVISL 1133 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~-~~q~i~it~ 1133 (1154)
+.+..|||||+++++||++|+.. ||++|||||+++||+.++..+.++|.++. .. +.++|++||
T Consensus 126 ~~~~~lS~G~~qrl~laral~~~----p~llllDEP~~~LD~~~~~~~~~~l~~~~------------~~~~~tvli~sH 189 (237)
T TIGR00968 126 RYPNQLSGGQRQRVALARALAVE----PQVLLLDEPFGALDAKVRKELRSWLRKLH------------DEVHVTTVFVTH 189 (237)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHH------------HhcCCEEEEEeC
Confidence 34578999999999999999998 99999999999999999999999999983 23 678999999
Q ss_pred chhH-HHhccceEEEeecCCC
Q 036401 1134 KDSF-YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~-~~~~d~~~GV~~~~~~ 1153 (1154)
+... ...||+++.+ .+|+
T Consensus 190 ~~~~~~~~~d~i~~l--~~g~ 208 (237)
T TIGR00968 190 DQEEAMEVADRIVVM--SNGK 208 (237)
T ss_pred CHHHHHhhcCEEEEE--ECCE
Confidence 9775 5689999544 4543
No 350
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.14 E-value=4e-05 Score=86.05 Aligned_cols=133 Identities=17% Similarity=0.264 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCCCCCCCcc--cceeecCCCCcc--cccc
Q 036401 983 AADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHG--IKYTAMPPTKRF--RDME 1058 (1154)
Q Consensus 983 ~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~ 1058 (1154)
+...+..-..+-.+.|....-.++..+..+|+.+.+.-. ||-...-.+...--++-.. ++..+.-+...| -...
T Consensus 1286 LLd~LS~qQ~q~qDLF~~~R~TFSEA~AKLyQRlNP~iD--MGQRt~QtiGEELLDYRNYLeLeVEV~RGaDGWLrAESG 1363 (1480)
T COG3096 1286 LLDVLSEQQEQHQDLFNSNRLTFSEALAKLYQRLNPQID--MGQRTPQTIGEELLDYRNYLELEVEVNRGSDGWLRAESG 1363 (1480)
T ss_pred HHHHHhhhHHHHHHHHhhccchHHHHHHHHHHhcCcccc--ccccCchhHHHHHHhhhhhhheeEEEecCCcchhhhhcc
Confidence 444555555666777777766777777788888732222 2211110000000001011 122222222222 3456
Q ss_pred cCchhhHHHHHHHHHHhh---c----------ccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCC
Q 036401 1059 QLSGGEKTVAALALLFSI---H----------SYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNG 1125 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~---~----------~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 1125 (1154)
.||-||--=+.++.++.. | .+.||.++||||. |-||......++++...+ .
T Consensus 1364 ALSTGEAIGTGmSILlMVVQSWEEESRRlRgKDI~PCRLLFLDEA-ARLDaKSIaTLFELCERL---------------d 1427 (1480)
T COG3096 1364 ALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL---------------D 1427 (1480)
T ss_pred CcccccccccCchhhHHHHHHHHHHHHhcccCCCcchhhhhhhhh-hhccchhHHHHHHHHHHh---------------h
Confidence 899998755544444322 3 4679999999996 789999999999988877 5
Q ss_pred eeEEEEEe
Q 036401 1126 FQSIVISL 1133 (1154)
Q Consensus 1126 ~q~i~it~ 1133 (1154)
+|.||..|
T Consensus 1428 MQLlIAAP 1435 (1480)
T COG3096 1428 MQLIIAAP 1435 (1480)
T ss_pred hhhhhccc
Confidence 88888544
No 351
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=3.7e-11 Score=110.17 Aligned_cols=81 Identities=28% Similarity=0.354 Sum_probs=71.4
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
+...|..+||||+|++.||+-|... -|+++||||||.||..|+..+.++|.+-++.|. -+|=|=
T Consensus 146 W~LaPaTFSGGEqQRVNIaRgfivd----~pILLLDEPTasLDa~Nr~vVveli~e~Ka~Ga------------AlvGIF 209 (235)
T COG4778 146 WSLAPATFSGGEQQRVNIARGFIVD----YPILLLDEPTASLDATNRAVVVELIREAKARGA------------ALVGIF 209 (235)
T ss_pred hcCCCcccCCchheehhhhhhhhcc----CceEEecCCcccccccchHHHHHHHHHHHhcCc------------eEEEee
Confidence 3356789999999999999999998 899999999999999999999999999864444 499999
Q ss_pred echhHHH-hccceEEEee
Q 036401 1133 LKDSFYD-KAEALVGVYR 1149 (1154)
Q Consensus 1133 ~~~~~~~-~~d~~~GV~~ 1149 (1154)
|+.+.=+ .||+++-|+.
T Consensus 210 HDeevre~vadR~~~~~~ 227 (235)
T COG4778 210 HDEEVREAVADRLLDVSA 227 (235)
T ss_pred ccHHHHHHHhhheeeccc
Confidence 9987776 8999988876
No 352
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=9.3e-11 Score=125.81 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=67.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPtsgLD~~~~~~l~~~l~~~------------~-~~~tii~isH~ 207 (261)
T PRK14263 145 VSGLSLSGGQQQRLCIARAIATE----PEVLLLDEPCSALDPIATRRVEELMVEL------------K-KDYTIALVTHN 207 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCccCCHHHHHHHHHHHHHH------------h-cCCeEEEEeCC
Confidence 35779999999999999999987 9999999999999999999999999999 3 35789999999
Q ss_pred hhH-HHhccceEEE
Q 036401 1135 DSF-YDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~-~~~~d~~~GV 1147 (1154)
... ...||+++-+
T Consensus 208 ~~~i~~~~d~v~~l 221 (261)
T PRK14263 208 MQQAIRVADTTAFF 221 (261)
T ss_pred HHHHHHhCCEEEEE
Confidence 765 5689999544
No 353
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.14 E-value=4.9e-11 Score=122.22 Aligned_cols=74 Identities=27% Similarity=0.337 Sum_probs=66.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++++.. |++++||||+++||+.++..+.++|..+. ..+..+|+|||+
T Consensus 119 ~~~~~LS~G~~~rl~la~al~~~----p~~lllDEP~~~LD~~~~~~l~~~l~~~~------------~~~~tiii~sh~ 182 (195)
T PRK13541 119 EKCYSLSSGMQKIVAIARLIACQ----SDLWLLDEVETNLSKENRDLLNNLIVMKA------------NSGGIVLLSSHL 182 (195)
T ss_pred cChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------hCCCEEEEEeCC
Confidence 45779999999999999999988 99999999999999999999999998762 346789999999
Q ss_pred hhHHHhccce
Q 036401 1135 DSFYDKAEAL 1144 (1154)
Q Consensus 1135 ~~~~~~~d~~ 1144 (1154)
......||.+
T Consensus 183 ~~~i~~~~~~ 192 (195)
T PRK13541 183 ESSIKSAQIL 192 (195)
T ss_pred ccccchhhee
Confidence 9988888875
No 354
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1e-10 Score=125.80 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=67.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 146 ~~~~~LS~G~~qrv~laral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tiii~tH~ 208 (259)
T PRK14260 146 KSALGLSGGQQQRLCIARALAIK----PKVLLMDEPCSALDPIATMKVEELIHSL------------R-SELTIAIVTHN 208 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCEEEEcCCCccCCHHHHHHHHHHHHHH------------h-cCCEEEEEeCC
Confidence 45779999999999999999987 9999999999999999999999999998 3 34689999999
Q ss_pred hhHH-HhccceEEEe
Q 036401 1135 DSFY-DKAEALVGVY 1148 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~ 1148 (1154)
...+ ..||+++-+.
T Consensus 209 ~~~i~~~~d~i~~l~ 223 (259)
T PRK14260 209 MQQATRVSDFTAFFS 223 (259)
T ss_pred HHHHHHhcCeEEEEe
Confidence 7665 5899986543
No 355
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=1.4e-10 Score=125.55 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=73.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.....|||||+++++||+.+++..+.+||++|||||+++||+.....+.++|..+ . .+.++|+|||+
T Consensus 166 ~~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~------------~-~~~tii~isH~ 232 (276)
T cd03241 166 PLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKEL------------S-RSHQVLCITHL 232 (276)
T ss_pred hhhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHH------------h-CCCEEEEEech
Confidence 4456899999999999998876555789999999999999999999999999998 3 46799999999
Q ss_pred hhHHHhccceEEEeec
Q 036401 1135 DSFYDKAEALVGVYRD 1150 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~ 1150 (1154)
+.++..||+++.|...
T Consensus 233 ~~~~~~~d~~~~l~~~ 248 (276)
T cd03241 233 PQVAAMADNHFLVEKE 248 (276)
T ss_pred HHHHHhcCcEEEEEEe
Confidence 9999999999888764
No 356
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.13 E-value=9.1e-11 Score=142.80 Aligned_cols=78 Identities=27% Similarity=0.345 Sum_probs=70.3
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...|||||||+++||++|.-. ||++||||||++||+.+...+.+.|..+ . .+.++|+|||+..
T Consensus 478 g~~LSGGqrQRi~LARall~~----~~ililDEptsaLD~~t~~~i~~~l~~~------------~-~~~tvI~VtHr~~ 540 (582)
T PRK11176 478 GVLLSGGQRQRIAIARALLRD----SPILILDEATSALDTESERAIQAALDEL------------Q-KNRTSLVIAHRLS 540 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHhC----CCEEEEECccccCCHHHHHHHHHHHHHH------------h-CCCEEEEEecchH
Confidence 357999999999999999988 9999999999999999999999999998 3 5788999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
.+..||+++ .+++|+
T Consensus 541 ~~~~~D~Ii--~l~~g~ 555 (582)
T PRK11176 541 TIEKADEIL--VVEDGE 555 (582)
T ss_pred HHHhCCEEE--EEECCE
Confidence 999999995 455554
No 357
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1e-10 Score=126.35 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=69.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|..+ . .+.++|+|||+
T Consensus 157 ~~~~~LS~G~~qrv~laral~~~----p~llllDEPt~gLD~~~~~~l~~~l~~l------------~-~~~tiiivth~ 219 (265)
T PRK14252 157 DLAFNLSGGQQQRLCIARALATD----PEILLFDEPTSALDPIATASIEELISDL------------K-NKVTILIVTHN 219 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEeCCCccCCHHHHHHHHHHHHHH------------H-hCCEEEEEecC
Confidence 44679999999999999999998 9999999999999999999999999999 3 35789999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
.... ..||+++ .+++|+
T Consensus 220 ~~~~~~~~d~i~--~l~~G~ 237 (265)
T PRK14252 220 MQQAARVSDYTA--YMYMGE 237 (265)
T ss_pred HHHHHHhCCEEE--EEECCE
Confidence 7665 6899984 445554
No 358
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.12 E-value=9.5e-11 Score=142.33 Aligned_cols=78 Identities=32% Similarity=0.383 Sum_probs=70.0
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||++||++|.-. ||++||||||++||+.+...+.+.|..+ . ++.++|+|||+..
T Consensus 469 g~~LSgGq~QRialARall~~----~~iliLDEpts~LD~~t~~~i~~~l~~~------------~-~~~tvIiitHr~~ 531 (588)
T PRK13657 469 GRQLSGGERQRLAIARALLKD----PPILILDEATSALDVETEAKVKAALDEL------------M-KGRTTFIIAHRLS 531 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHH------------h-cCCEEEEEEecHH
Confidence 457999999999999999877 9999999999999999999999999988 3 5788999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
.+..||+++ .+++|+
T Consensus 532 ~~~~~D~ii--~l~~G~ 546 (588)
T PRK13657 532 TVRNADRIL--VFDNGR 546 (588)
T ss_pred HHHhCCEEE--EEECCE
Confidence 999999994 456554
No 359
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.12 E-value=6.6e-11 Score=141.26 Aligned_cols=82 Identities=22% Similarity=0.226 Sum_probs=70.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++.. ..+..+|+|||+
T Consensus 423 ~~~~~LSgGq~qrv~laral~~~----p~lLllDEPt~~LD~~~~~~l~~~l~~l~~-----------~~g~tvi~vsHd 487 (520)
T TIGR03269 423 KYPDELSEGERHRVALAQVLIKE----PRIVILDEPTGTMDPITKVDVTHSILKARE-----------EMEQTFIIVSHD 487 (520)
T ss_pred CChhhCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-----------HcCcEEEEEeCC
Confidence 56789999999999999999988 999999999999999999999999999831 136679999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 488 ~~~~~~~~d~i~~--l~~G~ 505 (520)
T TIGR03269 488 MDFVLDVCDRAAL--MRDGK 505 (520)
T ss_pred HHHHHHhCCEEEE--EECCE
Confidence 7666 58999954 45553
No 360
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=6.8e-11 Score=143.14 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=68.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||.+|+.. |+|+||||||++||+.++..+.++|.++ . + .+|+|||
T Consensus 425 ~~~~~~LSgGekqRl~La~~l~~~----p~lLlLDEPt~~LD~~~~~~l~~~L~~~------------~--g-tvi~vSH 485 (638)
T PRK10636 425 TEETRRFSGGEKARLVLALIVWQR----PNLLLLDEPTNHLDLDMRQALTEALIDF------------E--G-ALVVVSH 485 (638)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHc------------C--C-eEEEEeC
Confidence 356789999999999999999987 9999999999999999999999999988 2 3 6999999
Q ss_pred chhHHH-hccceEEEeecCCC
Q 036401 1134 KDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
+..++. .||+++- +.+|+
T Consensus 486 d~~~~~~~~d~i~~--l~~G~ 504 (638)
T PRK10636 486 DRHLLRSTTDDLYL--VHDGK 504 (638)
T ss_pred CHHHHHHhCCEEEE--EECCE
Confidence 987775 8999964 44553
No 361
>PRK13409 putative ATPase RIL; Provisional
Probab=99.12 E-value=8.9e-11 Score=139.60 Aligned_cols=79 Identities=27% Similarity=0.297 Sum_probs=69.1
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..|||||+++++||++|+.. |++++|||||++||+.++..+.++|+++.. ..+..+|+|||
T Consensus 448 ~~~~~~LSGGe~QRvaiAraL~~~----p~llLLDEPt~~LD~~~~~~l~~~l~~l~~-----------~~g~tviivsH 512 (590)
T PRK13409 448 DKNVKDLSGGELQRVAIAACLSRD----ADLYLLDEPSAHLDVEQRLAVAKAIRRIAE-----------EREATALVVDH 512 (590)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHHH-----------hCCCEEEEEeC
Confidence 356889999999999999999987 999999999999999999999999999931 13567999999
Q ss_pred chhHHH-hccceEEE
Q 036401 1134 KDSFYD-KAEALVGV 1147 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV 1147 (1154)
+..++. .||+++-+
T Consensus 513 D~~~~~~~aDrvivl 527 (590)
T PRK13409 513 DIYMIDYISDRLMVF 527 (590)
T ss_pred CHHHHHHhCCEEEEE
Confidence 977664 89998754
No 362
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.12 E-value=7.4e-11 Score=139.83 Aligned_cols=83 Identities=22% Similarity=0.197 Sum_probs=70.3
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||++|+.. |++++|||||++||+.++..+.++|.++.+ ..++++|+|||
T Consensus 396 ~~~~~~LSgGq~qrv~la~al~~~----p~lllLDEPt~gLD~~~~~~l~~~L~~l~~-----------~~~~tviivsH 460 (490)
T PRK10938 396 DAPFHSLSWGQQRLALIVRALVKH----PTLLILDEPLQGLDPLNRQLVRRFVDVLIS-----------EGETQLLFVSH 460 (490)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCccccCCHHHHHHHHHHHHHHHh-----------cCCcEEEEEec
Confidence 456889999999999999999988 999999999999999999999999999931 12356999999
Q ss_pred chhHHH--hccceEEEeecCCC
Q 036401 1134 KDSFYD--KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~~--~~d~~~GV~~~~~~ 1153 (1154)
+...+. .||+++ .+.+|+
T Consensus 461 d~~~~~~~~~d~v~--~l~~G~ 480 (490)
T PRK10938 461 HAEDAPACITHRLE--FVPDGD 480 (490)
T ss_pred chhhhhhhhheeEE--EecCCc
Confidence 987774 478884 466665
No 363
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=1.2e-10 Score=124.51 Aligned_cols=76 Identities=18% Similarity=0.297 Sum_probs=68.0
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |+++||||||++||+.++..+.++|.++ . .+.++|+|||+
T Consensus 149 ~~~~~LS~G~~qrl~laral~~~----P~llllDEPt~~LD~~~~~~l~~~l~~~------------~-~~~tiilvsh~ 211 (257)
T PRK14246 149 SPASQLSGGQQQRLTIARALALK----PKVLLMDEPTSMIDIVNSQAIEKLITEL------------K-NEIAIVIVSHN 211 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEcCCCccCCHHHHHHHHHHHHHH------------h-cCcEEEEEECC
Confidence 35678999999999999999988 9999999999999999999999999998 3 35789999999
Q ss_pred hhHH-HhccceEEE
Q 036401 1135 DSFY-DKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV 1147 (1154)
...+ ..||+++-+
T Consensus 212 ~~~~~~~~d~v~~l 225 (257)
T PRK14246 212 PQQVARVADYVAFL 225 (257)
T ss_pred HHHHHHhCCEEEEE
Confidence 8776 689998644
No 364
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.11 E-value=1.3e-10 Score=124.95 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=67.3
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHH-HhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFI-RSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l-~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.+..|||||+++++||++|+.. |+++|||||+++||+..+..+.+.+ ..+ . .+..+|+|||+
T Consensus 156 ~~~~LSgGq~qrv~lAraL~~~----p~iLiLDEPt~gLD~~~~~~l~~~ll~~~------------~-~~~tIiiisH~ 218 (282)
T cd03291 156 GGITLSGGQRARISLARAVYKD----ADLYLLDSPFGYLDVFTEKEIFESCVCKL------------M-ANKTRILVTSK 218 (282)
T ss_pred CCCcCCHHHHHHHHHHHHHhcC----CCEEEEECCCccCCHHHHHHHHHHHHHHh------------h-CCCEEEEEeCC
Confidence 4679999999999999999987 9999999999999999999998854 566 2 35789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+.+|+
T Consensus 219 ~~~~~~~d~i~--~l~~G~ 235 (282)
T cd03291 219 MEHLKKADKIL--ILHEGS 235 (282)
T ss_pred hHHHHhCCEEE--EEECCE
Confidence 88888999984 455554
No 365
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.11 E-value=1.4e-10 Score=114.41 Aligned_cols=81 Identities=38% Similarity=0.540 Sum_probs=72.9
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHH
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFY 1138 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~ 1138 (1154)
.|||||+++++||.+++...+.+|+++|||||++++|+..+..+...|.++. ..+.++|++||+..+.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~------------~~~~~vii~TH~~~~~ 144 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHL------------VKGAQVIVITHLPELA 144 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH------------hcCCEEEEEcCCHHHH
Confidence 5999999999999999987667899999999999999999999999999873 2367899999999999
Q ss_pred HhccceEEEeecC
Q 036401 1139 DKAEALVGVYRDS 1151 (1154)
Q Consensus 1139 ~~~d~~~GV~~~~ 1151 (1154)
..+|+++.+++..
T Consensus 145 ~~~d~~~~l~~~~ 157 (162)
T cd03227 145 ELADKLIHIKKVI 157 (162)
T ss_pred HhhhhEEEEEEEe
Confidence 9999999987643
No 366
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=1.4e-10 Score=124.47 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=65.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++ . .+..+|+|||+
T Consensus 142 ~~~~~LS~Gq~qrv~laral~~~----p~llllDEP~~gLD~~~~~~l~~~l~~~------------~-~~~tiii~sh~ 204 (250)
T PRK14266 142 KSALGLSGGQQQRLCIARTIAVS----PEVILMDEPCSALDPISTTKIEDLIHKL------------K-EDYTIVIVTHN 204 (250)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC----CCEEEEcCCCccCCHHHHHHHHHHHHHH------------h-cCCeEEEEECC
Confidence 45779999999999999999988 9999999999999999999999999998 3 35789999999
Q ss_pred hhHH-HhccceE
Q 036401 1135 DSFY-DKAEALV 1145 (1154)
Q Consensus 1135 ~~~~-~~~d~~~ 1145 (1154)
...+ ..||+++
T Consensus 205 ~~~~~~~~~~i~ 216 (250)
T PRK14266 205 MQQATRVSKYTS 216 (250)
T ss_pred HHHHHhhcCEEE
Confidence 6655 5778774
No 367
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.11 E-value=1.4e-10 Score=123.14 Aligned_cols=77 Identities=25% Similarity=0.351 Sum_probs=67.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 135 ~~~~~LS~G~~qrv~laral~~~----p~illlDEPts~LD~~~~~~l~~~l~~l~------------~~~~tIIiiSHd 198 (255)
T cd03236 135 RNIDQLSGGELQRVAIAAALARD----ADFYFFDEPSSYLDIKQRLNAARLIRELA------------EDDNYVLVVEHD 198 (255)
T ss_pred CChhhCCHHHHHHHHHHHHHHhC----CCEEEEECCCCCCCHHHHHHHHHHHHHHH------------hcCCEEEEEECC
Confidence 45679999999999999999987 99999999999999999999999999983 235679999999
Q ss_pred hhHHH-hccceEEE
Q 036401 1135 DSFYD-KAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV 1147 (1154)
...+. .||+++-+
T Consensus 199 ~~~~~~~ad~i~~l 212 (255)
T cd03236 199 LAVLDYLSDYIHCL 212 (255)
T ss_pred HHHHHHhCCEEEEE
Confidence 77665 79998655
No 368
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.10 E-value=1.3e-10 Score=140.20 Aligned_cols=79 Identities=28% Similarity=0.383 Sum_probs=70.6
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
....|||||||+++||++|... ||++||||||++||+.+...+.+.|..+ . ++..+|+|||+.
T Consensus 468 ~~~~LSgGq~qrl~lARall~~----p~ililDEpts~LD~~~~~~i~~~l~~~------------~-~~~tvI~isH~~ 530 (585)
T TIGR01192 468 RGNRLSGGERQRLAIARAILKN----APILVLDEATSALDVETEARVKNAIDAL------------R-KNRTTFIIAHRL 530 (585)
T ss_pred CCCCCCHHHHHHHHHHHHHhcC----CCEEEEECCccCCCHHHHHHHHHHHHHH------------h-CCCEEEEEEcCh
Confidence 3568999999999999999988 9999999999999999999999999988 3 577899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..||++ +.+++|+
T Consensus 531 ~~~~~~d~i--~~l~~G~ 546 (585)
T TIGR01192 531 STVRNADLV--LFLDQGR 546 (585)
T ss_pred HHHHcCCEE--EEEECCE
Confidence 999999999 4456654
No 369
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-10 Score=112.66 Aligned_cols=71 Identities=27% Similarity=0.319 Sum_probs=65.5
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHH
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFY 1138 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~ 1138 (1154)
.+|||||.|.-|+-++++. |.|+||||||+|||....+.+.+.+..+. +++.-|++|||...+.
T Consensus 144 GFSGGEkKR~EilQ~~~le----Pkl~ILDE~DSGLDIdalk~V~~~i~~lr------------~~~~~~liITHy~rll 207 (251)
T COG0396 144 GFSGGEKKRNEILQLLLLE----PKLAILDEPDSGLDIDALKIVAEGINALR------------EEGRGVLIITHYQRLL 207 (251)
T ss_pred CcCcchHHHHHHHHHHhcC----CCEEEecCCCcCccHHHHHHHHHHHHHHh------------cCCCeEEEEecHHHHH
Confidence 7999999999999999999 99999999999999999999999999994 4677799999999999
Q ss_pred Hhc--cceE
Q 036401 1139 DKA--EALV 1145 (1154)
Q Consensus 1139 ~~~--d~~~ 1145 (1154)
... |+++
T Consensus 208 ~~i~pD~vh 216 (251)
T COG0396 208 DYIKPDKVH 216 (251)
T ss_pred hhcCCCEEE
Confidence 865 7776
No 370
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.5e-10 Score=132.06 Aligned_cols=78 Identities=31% Similarity=0.307 Sum_probs=71.5
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
..+||||||||+|||++|.-. |+++||||.|+|||..+-..+-+.|..+ . .+.++|+|.|+.+
T Consensus 602 G~qLSGGQKQRIAIARALlr~----P~VLILDEATSALDaeSE~lVq~aL~~~------------~-~~rTVlvIAHRLS 664 (716)
T KOG0058|consen 602 GSQLSGGQKQRIAIARALLRN----PRVLILDEATSALDAESEYLVQEALDRL------------M-QGRTVLVIAHRLS 664 (716)
T ss_pred cccccchHHHHHHHHHHHhcC----CCEEEEechhhhcchhhHHHHHHHHHHh------------h-cCCeEEEEehhhh
Confidence 459999999999999999988 9999999999999999999999999888 3 5689999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||.+ |.+++|+
T Consensus 665 TV~~Ad~I--vvi~~G~ 679 (716)
T KOG0058|consen 665 TVRHADQI--VVIDKGR 679 (716)
T ss_pred HhhhccEE--EEEcCCe
Confidence 99999988 6677775
No 371
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=1.3e-10 Score=140.79 Aligned_cols=76 Identities=26% Similarity=0.348 Sum_probs=70.2
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHH
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFY 1138 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~ 1138 (1154)
+||||||||+|||+++.-. |++++|||||+|||+.....+.+.|... ..+.+-|+|+|+.+++
T Consensus 489 qLSGGQKQRIAIARalv~~----P~ILLLDEaTSaLD~~se~~Vq~ALd~~-------------~~grTTivVaHRLStI 551 (1228)
T KOG0055|consen 489 QLSGGQKQRIAIARALVRN----PKILLLDEATSALDAESERVVQEALDKA-------------SKGRTTIVVAHRLSTI 551 (1228)
T ss_pred CCChHHHHHHHHHHHHHhC----CCEEEecCcccccCHHHHHHHHHHHHHh-------------hcCCeEEEEeeehhhh
Confidence 5999999999999999988 9999999999999999999999999988 3677899999999999
Q ss_pred HhccceEEEeecCCC
Q 036401 1139 DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1139 ~~~d~~~GV~~~~~~ 1153 (1154)
..||.+ +.|++|+
T Consensus 552 rnaD~I--~v~~~G~ 564 (1228)
T KOG0055|consen 552 RNADKI--AVMEEGK 564 (1228)
T ss_pred hccCEE--EEEECCE
Confidence 999999 5567764
No 372
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.09 E-value=1.7e-10 Score=140.40 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=70.4
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||++||+++.-. ||+++|||||++||+.+...+.+.|..+ . ++.++|+|||+..
T Consensus 474 g~~LSGGqrQRialARaLl~~----~~illlDEpts~LD~~t~~~i~~~l~~~------------~-~~~tvIivtHr~~ 536 (592)
T PRK10790 474 GNNLSVGQKQLLALARVLVQT----PQILILDEATANIDSGTEQAIQQALAAV------------R-EHTTLVVIAHRLS 536 (592)
T ss_pred CCCCCHHHHHHHHHHHHHHhC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------h-CCCEEEEEecchH
Confidence 457999999999999999876 9999999999999999999999999998 3 5688999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
.+..||+++ .+++|+
T Consensus 537 ~l~~~D~ii--~l~~G~ 551 (592)
T PRK10790 537 TIVEADTIL--VLHRGQ 551 (592)
T ss_pred HHHhCCEEE--EEECCE
Confidence 999999994 566665
No 373
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.09 E-value=1.5e-10 Score=119.94 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=66.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..||||||++++||++|+.. ||++|||||+++||+.++..+..+|.... .+..+|+|||+
T Consensus 100 ~~~~~lS~G~~qrv~la~al~~~----p~llllDEP~~~lD~~~~~~~~~~l~~~~-------------~~~~ii~vsH~ 162 (213)
T PRK15177 100 DRVSEYSVTMKTHLAFAINLLLP----CRLYIADGKLYTGDNATQLRMQAALACQL-------------QQKGLIVLTHN 162 (213)
T ss_pred chHhhcCHHHHHHHHHHHHHhcC----CCEEEECCCCccCCHHHHHHHHHHHHHHh-------------hCCcEEEEECC
Confidence 46778999999999999999987 99999999999999999999999886541 12349999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++- +.+|+
T Consensus 163 ~~~~~~~~d~i~~--l~~G~ 180 (213)
T PRK15177 163 PRLIKEHCHAFGV--LLHGK 180 (213)
T ss_pred HHHHHHhcCeeEE--EECCe
Confidence 8776 58999954 45554
No 374
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.09 E-value=1e-10 Score=120.26 Aligned_cols=67 Identities=34% Similarity=0.444 Sum_probs=59.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||++|+.. |++++||||+++||+.++..+.++|.++. ..+..+|+|||+
T Consensus 123 ~~~~~LS~G~~qrv~la~al~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~~------------~~~~tii~~sH~ 186 (198)
T TIGR01189 123 LPAAQLSAGQQRRLALARLWLSR----APLWILDEPTTALDKAGVALLAGLLRAHL------------ARGGIVLLTTHQ 186 (198)
T ss_pred CChhhcCHHHHHHHHHHHHHhcC----CCEEEEeCCCcCCCHHHHHHHHHHHHHHH------------hCCCEEEEEEcc
Confidence 45679999999999999999988 99999999999999999999999999983 246679999998
Q ss_pred hhH
Q 036401 1135 DSF 1137 (1154)
Q Consensus 1135 ~~~ 1137 (1154)
...
T Consensus 187 ~~~ 189 (198)
T TIGR01189 187 DLG 189 (198)
T ss_pred ccc
Confidence 743
No 375
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.08 E-value=2.1e-10 Score=109.05 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=68.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+....||-|+||+++||.++... |.++|||||++|||-..+..+.++|..+. .++.-+||.||-
T Consensus 129 rRv~~~S~G~kqkV~iARAlvh~----P~i~vlDEP~sGLDi~~~r~~~dfi~q~k------------~egr~viFSSH~ 192 (245)
T COG4555 129 RRVGEFSTGMKQKVAIARALVHD----PSILVLDEPTSGLDIRTRRKFHDFIKQLK------------NEGRAVIFSSHI 192 (245)
T ss_pred HHHhhhchhhHHHHHHHHHHhcC----CCeEEEcCCCCCccHHHHHHHHHHHHHhh------------cCCcEEEEeccc
Confidence 56779999999999999999998 99999999999999999999999999994 357779999999
Q ss_pred hhHHH-hccceEE
Q 036401 1135 DSFYD-KAEALVG 1146 (1154)
Q Consensus 1135 ~~~~~-~~d~~~G 1146 (1154)
.+-++ .||+++-
T Consensus 193 m~EvealCDrviv 205 (245)
T COG4555 193 MQEVEALCDRVIV 205 (245)
T ss_pred HHHHHHhhheEEE
Confidence 65554 9999963
No 376
>PRK13409 putative ATPase RIL; Provisional
Probab=99.08 E-value=2.1e-10 Score=136.41 Aligned_cols=77 Identities=27% Similarity=0.297 Sum_probs=68.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..|||||+++++||.+|+.. |++++||||+++||+..+..+.++|+++ .. +..+|+|||
T Consensus 207 ~~~~~~LSgGe~qrv~ia~al~~~----p~lllLDEPts~LD~~~~~~l~~~i~~l------------~~-g~tvIivsH 269 (590)
T PRK13409 207 DRDISELSGGELQRVAIAAALLRD----ADFYFFDEPTSYLDIRQRLNVARLIREL------------AE-GKYVLVVEH 269 (590)
T ss_pred cCChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHH------------HC-CCEEEEEeC
Confidence 467889999999999999999988 9999999999999999999999999999 33 677999999
Q ss_pred chhHH-HhccceEEE
Q 036401 1134 KDSFY-DKAEALVGV 1147 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV 1147 (1154)
+...+ ..||+++-+
T Consensus 270 d~~~l~~~~D~v~vl 284 (590)
T PRK13409 270 DLAVLDYLADNVHIA 284 (590)
T ss_pred CHHHHHHhCCEEEEE
Confidence 97666 589998644
No 377
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.07 E-value=1.8e-10 Score=142.71 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=70.9
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||++||++|.-. ||++||||||++||+.+...+.+.|..+ . ++.++|+|||+..
T Consensus 599 G~~LSgGQrQRlalARall~~----p~iliLDE~Ts~LD~~te~~i~~~l~~~------------~-~~~T~iiItHrl~ 661 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRD----PPILLLDEPTSAMDNRSEERFKDRLKRW------------L-AGKTLVLVTHRTS 661 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHH------------h-CCCEEEEEecCHH
Confidence 357999999999999999876 9999999999999999999999999998 3 5788999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ +.+++|+
T Consensus 662 ~~~~~D~i--ivl~~G~ 676 (694)
T TIGR03375 662 LLDLVDRI--IVMDNGR 676 (694)
T ss_pred HHHhCCEE--EEEeCCE
Confidence 99999999 5567775
No 378
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.07 E-value=2e-10 Score=138.51 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=70.2
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||+|++||++|+-. ||++||||||++||+.+...+.+.|..+ . ++.++|+|||+..
T Consensus 449 g~~LSgGq~qRi~lARall~~----~~illlDEpts~LD~~~~~~i~~~l~~~------------~-~~~tii~itH~~~ 511 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLN----AEILILDDALSAVDGRTEHQILHNLRQW------------G-EGRTVIISAHRLS 511 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcC----CCEEEEECccccCCHHHHHHHHHHHHHH------------h-CCCEEEEEecchh
Confidence 457999999999999999988 9999999999999999999999999998 3 5778999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
.+..||+++ .+++|+
T Consensus 512 ~~~~~d~i~--~l~~G~ 526 (569)
T PRK10789 512 ALTEASEIL--VMQHGH 526 (569)
T ss_pred HHHcCCEEE--EEeCCE
Confidence 999999995 455553
No 379
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.07 E-value=2.1e-10 Score=137.82 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=69.9
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||++||+++.-. ||++||||||++||+.+...+.+.|..+ ...+.++|+|||+..
T Consensus 452 g~~LSgGq~qrl~lARall~~----~~ililDEpts~LD~~~~~~i~~~l~~~------------~~~~~tvi~ith~~~ 515 (544)
T TIGR01842 452 GATLSGGQRQRIALARALYGD----PKLVVLDEPNSNLDEEGEQALANAIKAL------------KARGITVVVITHRPS 515 (544)
T ss_pred cCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCccccCHHHHHHHHHHHHHH------------hhCCCEEEEEeCCHH
Confidence 568999999999999999877 9999999999999999999999999988 224678999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
.+..||+++ .+++|+
T Consensus 516 ~~~~~d~i~--~l~~G~ 530 (544)
T TIGR01842 516 LLGCVDKIL--VLQDGR 530 (544)
T ss_pred HHHhCCEEE--EEECCE
Confidence 999999985 445554
No 380
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=1.8e-10 Score=139.55 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=68.8
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||.+|+.. |+++||||||++||+.++..+.++|.++ +..+|+|||
T Consensus 144 ~~~~~~LSgGerqRv~LA~aL~~~----P~lLLLDEPtn~LD~~~~~~L~~~L~~~---------------~~tviivsH 204 (638)
T PRK10636 144 ERPVSDFSGGWRMRLNLAQALICR----SDLLLLDEPTNHLDLDAVIWLEKWLKSY---------------QGTLILISH 204 (638)
T ss_pred cCchhhcCHHHHHHHHHHHHHccC----CCEEEEcCCCCcCCHHHHHHHHHHHHhC---------------CCeEEEEeC
Confidence 356889999999999999999988 9999999999999999999999999987 236999999
Q ss_pred chhHHH-hccceEEEeecCCC
Q 036401 1134 KDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
+..++. .||+++-+ ++|+
T Consensus 205 d~~~l~~~~d~i~~L--~~G~ 223 (638)
T PRK10636 205 DRDFLDPIVDKIIHI--EQQS 223 (638)
T ss_pred CHHHHHHhcCEEEEE--eCCE
Confidence 987765 89998644 4553
No 381
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.06 E-value=2.5e-10 Score=137.65 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=71.0
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
....||||||||++||+++.-. ||++||||||++||+.+...+.+.|..+ . ++.++|+|||+.
T Consensus 472 ~g~~LSgGqrqRialARall~~----~~ililDE~ts~lD~~t~~~i~~~l~~~------------~-~~~tviiitHr~ 534 (574)
T PRK11160 472 GGRQLSGGEQRRLGIARALLHD----APLLLLDEPTEGLDAETERQILELLAEH------------A-QNKTVLMITHRL 534 (574)
T ss_pred CCCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------c-CCCEEEEEecCh
Confidence 3558999999999999999987 9999999999999999999999999998 3 578899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..||+++ .+++|+
T Consensus 535 ~~~~~~d~i~--~l~~G~ 550 (574)
T PRK11160 535 TGLEQFDRIC--VMDNGQ 550 (574)
T ss_pred hHHHhCCEEE--EEeCCe
Confidence 9999999994 456664
No 382
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.06 E-value=2.8e-10 Score=137.57 Aligned_cols=78 Identities=27% Similarity=0.377 Sum_probs=70.1
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||++||++|.-. ||++||||||++||+.+...+.+.|..+ . ++.+.|+|+||..
T Consensus 463 G~~LSgGQrQrlaiARall~~----~~ILILDEaTSalD~~tE~~I~~~l~~l------------~-~~rT~iiIaHRls 525 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRN----PPILILDEATSALDTETEALIQDALKKL------------L-KGRTTLIIAHRLS 525 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcC----CCEEEEeccccccCHHhHHHHHHHHHHH------------h-cCCEEEEEeccHh
Confidence 458999999999999999888 9999999999999999999999999988 3 5567888999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ +.+++|+
T Consensus 526 ti~~aD~I--iVl~~G~ 540 (567)
T COG1132 526 TIKNADRI--IVLDNGR 540 (567)
T ss_pred HHHhCCEE--EEEECCE
Confidence 99999999 5567765
No 383
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.9e-10 Score=137.46 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=67.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||.+|+.. |++++|||||++||+.++..+.++|.+. +..+|+|||+
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~~---------------~~tiiivsHd 211 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSN----PDILLLDEPTNNLDINTIRWLEDVLNER---------------NSTMIIISHD 211 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCcccCHHHHHHHHHHHHhC---------------CCeEEEEeCC
Confidence 45789999999999999999987 9999999999999999999999998753 3569999999
Q ss_pred hhHH-HhccceEEEeecCCC
Q 036401 1135 DSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
...+ ..||+++ .+++|+
T Consensus 212 ~~~~~~~~d~i~--~l~~g~ 229 (530)
T PRK15064 212 RHFLNSVCTHMA--DLDYGE 229 (530)
T ss_pred HHHHHhhcceEE--EEeCCE
Confidence 7766 5899985 445553
No 384
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.06 E-value=2.9e-10 Score=138.33 Aligned_cols=78 Identities=27% Similarity=0.336 Sum_probs=69.9
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...|||||||+++||+++.-. ||+++|||||++||+.+...+.+.|..+ . ++.++|+|||+..
T Consensus 474 g~~LSgGq~Qrl~laRal~~~----~~ililDEpts~lD~~~~~~i~~~l~~~------------~-~~~t~IiitH~~~ 536 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKD----APILLLDEATSALDAESEQLVQQALETL------------M-KGRTTLIIAHRLA 536 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhC----CCeEEEeCcccccCHHHHHHHHHHHHHH------------h-CCCEEEEEecchH
Confidence 457999999999999999877 9999999999999999999999999998 3 5788999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
.+..||+++ .+++|+
T Consensus 537 ~~~~~d~vi--~l~~g~ 551 (576)
T TIGR02204 537 TVLKADRIV--VMDQGR 551 (576)
T ss_pred HHHhCCEEE--EEECCE
Confidence 999999995 445554
No 385
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.05 E-value=3.2e-10 Score=140.32 Aligned_cols=78 Identities=23% Similarity=0.277 Sum_probs=70.7
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...|||||||+++||++|.-. ||++||||||++||+.+...+.+.|.++ . .+.++|+|||+..
T Consensus 591 g~~LSgGq~qri~lARall~~----~~ililDEpts~LD~~~~~~i~~~l~~~------------~-~~~t~i~itH~~~ 653 (694)
T TIGR01846 591 GANLSGGQRQRIAIARALVGN----PRILIFDEATSALDYESEALIMRNMREI------------C-RGRTVIIIAHRLS 653 (694)
T ss_pred CCCCCHHHHHHHHHHHHHHhC----CCEEEEECCCcCCCHHHHHHHHHHHHHH------------h-CCCEEEEEeCChH
Confidence 458999999999999999887 9999999999999999999999999998 3 5778999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ +.+++|+
T Consensus 654 ~~~~~d~i--i~l~~G~ 668 (694)
T TIGR01846 654 TVRACDRI--IVLEKGQ 668 (694)
T ss_pred HHHhCCEE--EEEeCCE
Confidence 99999999 4556664
No 386
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.05 E-value=3.1e-10 Score=140.90 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=69.3
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...|||||||+++||++|.-. ||++||||||++||+.+...+.+.|..+ .+.++|+|||+..
T Consensus 609 G~~LSgGQrQRialARall~~----p~iliLDE~Ts~LD~~te~~i~~~L~~~--------------~~~T~IiitHr~~ 670 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTD----SKVLILDESTSNLDTITEKKIVNNLLNL--------------QDKTIIFVAHRLS 670 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhC----CCEEEEeCccccCCHHHHHHHHHHHHHh--------------cCCEEEEEecchH
Confidence 457999999999999999988 9999999999999999999999999876 3567999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ +.+++|+
T Consensus 671 ~~~~~D~i--~~l~~G~ 685 (708)
T TIGR01193 671 VAKQSDKI--IVLDHGK 685 (708)
T ss_pred HHHcCCEE--EEEECCE
Confidence 99999999 4566664
No 387
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.05 E-value=2.4e-10 Score=141.32 Aligned_cols=76 Identities=26% Similarity=0.300 Sum_probs=68.3
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||++||++|.-. ||++||||||++||+.+...+.+.|..+ +.++|+|||+..
T Consensus 586 G~~LSGGQrQRialARAll~~----p~iLiLDEpTS~LD~~te~~i~~~L~~~---------------~~T~IiItHr~~ 646 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRK----PRILLFDEATSALDNRTQAIVSESLERL---------------KVTRIVIAHRLS 646 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCccCCCHHHHHHHHHHHHHh---------------CCeEEEEecChH
Confidence 457999999999999999887 9999999999999999999999999887 247999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||+++ .+++|+
T Consensus 647 ~i~~~D~Ii--vl~~G~ 661 (686)
T TIGR03797 647 TIRNADRIY--VLDAGR 661 (686)
T ss_pred HHHcCCEEE--EEECCE
Confidence 999999994 456664
No 388
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.1e-10 Score=124.51 Aligned_cols=77 Identities=26% Similarity=0.336 Sum_probs=69.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.....|||||||+++||++|.=. ||+++|||||++||...-..+.++|... . .+.++|+|-|+
T Consensus 483 erG~~LSGGekQrvslaRa~lKd----a~Il~~DEaTS~LD~~TE~~i~~~i~~~------------~-~~rTvI~IvH~ 545 (591)
T KOG0057|consen 483 ERGLMLSGGEKQRVSLARAFLKD----APILLLDEATSALDSETEREILDMIMDV------------M-SGRTVIMIVHR 545 (591)
T ss_pred hcccccccchHHHHHHHHHHhcC----CCeEEecCcccccchhhHHHHHHHHHHh------------c-CCCeEEEEEec
Confidence 34568999999999999999766 9999999999999999999999999986 2 68899999999
Q ss_pred hhHHHhccceEEEe
Q 036401 1135 DSFYDKAEALVGVY 1148 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~ 1148 (1154)
..+...||.++++.
T Consensus 546 l~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 546 LDLLKDFDKIIVLD 559 (591)
T ss_pred chhHhcCCEEEEEE
Confidence 99999999998764
No 389
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.05 E-value=2.8e-10 Score=136.57 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=67.7
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHH-HhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFI-RSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l-~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
...||||||+|++||+++.-. ||++||||||++||+.+...+.+.+ ..+. ..+.++|+|||+.
T Consensus 468 ~~~LSgGq~qRlalaRall~~----~~ililDE~ts~LD~~~~~~i~~~l~~~~~------------~~~~tiiiisH~~ 531 (555)
T TIGR01194 468 TTALSTGQQKRLALICAWLED----RPILLFDEWAADQDPAFKRFFYEELLPDLK------------RQGKTIIIISHDD 531 (555)
T ss_pred cccCCHHHHHHHHHHHHHHcC----CCEEEEeCCccCCCHHHHHHHHHHHHHHHH------------hCCCEEEEEeccH
Confidence 378999999999999999887 9999999999999999999998755 3441 2467899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..||+++ .+++|+
T Consensus 532 ~~~~~~d~i~--~l~~G~ 547 (555)
T TIGR01194 532 QYFELADQII--KLAAGC 547 (555)
T ss_pred HHHHhCCEEE--EEECCE
Confidence 9999999995 456664
No 390
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=2.4e-10 Score=136.59 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=66.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||++|+.. |++++|||||++||+.++..+.++|..+ . ..+|+|||
T Consensus 433 ~~~~~~LSgGq~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~------------~---~tvi~vsH 493 (530)
T PRK15064 433 KKSVKVLSGGEKGRMLFGKLMMQK----PNVLVMDEPTNHMDMESIESLNMALEKY------------E---GTLIFVSH 493 (530)
T ss_pred cCcccccCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHC------------C---CEEEEEeC
Confidence 467889999999999999999987 9999999999999999999999999987 2 26999999
Q ss_pred chhHHH-hccceEEE
Q 036401 1134 KDSFYD-KAEALVGV 1147 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV 1147 (1154)
+...+. .||+++-+
T Consensus 494 d~~~~~~~~d~i~~l 508 (530)
T PRK15064 494 DREFVSSLATRIIEI 508 (530)
T ss_pred CHHHHHHhCCEEEEE
Confidence 977665 79999644
No 391
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.04 E-value=3.7e-10 Score=140.51 Aligned_cols=76 Identities=21% Similarity=0.346 Sum_probs=68.0
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||++||++|.-. ||++||||||++||+.+...+.+.|... +.++|+|||+..
T Consensus 613 G~~LSGGQrQRiaLARall~~----p~iliLDEptS~LD~~te~~i~~~l~~~---------------~~T~IiitHrl~ 673 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRN----PSILILDEATSALDPETEKIIDDNLRRR---------------GCTCIIVAHRLS 673 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhC----CCEEEEECccccCCHHHHHHHHHHHHhc---------------CCEEEEEecCHH
Confidence 457999999999999999877 9999999999999999999999998753 467999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ +.+++|+
T Consensus 674 ~i~~~D~I--ivl~~G~ 688 (710)
T TIGR03796 674 TIRDCDEI--IVLERGK 688 (710)
T ss_pred HHHhCCEE--EEEeCCE
Confidence 99999999 4567665
No 392
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.04 E-value=2.9e-10 Score=138.25 Aligned_cols=78 Identities=28% Similarity=0.358 Sum_probs=68.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||.+|+.. |+++||||||++||+.++..+.++|..+ . ..+|+|||+
T Consensus 152 ~~~~~LSgGekqRv~LAraL~~~----P~lLLLDEPt~~LD~~~~~~L~~~L~~~------------~---~tvlivsHd 212 (635)
T PRK11147 152 AALSSLSGGWLRKAALGRALVSN----PDVLLLDEPTNHLDIETIEWLEGFLKTF------------Q---GSIIFISHD 212 (635)
T ss_pred CchhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCCccCHHHHHHHHHHHHhC------------C---CEEEEEeCC
Confidence 56889999999999999999988 9999999999999999999999999988 2 369999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
..++. .||+++-+ ++|+
T Consensus 213 ~~~l~~~~d~i~~L--~~G~ 230 (635)
T PRK11147 213 RSFIRNMATRIVDL--DRGK 230 (635)
T ss_pred HHHHHHhcCeEEEE--ECCE
Confidence 87765 89999644 4553
No 393
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.04 E-value=4.9e-10 Score=116.35 Aligned_cols=86 Identities=23% Similarity=0.239 Sum_probs=69.5
Q ss_pred ccccccCchhhHHHHHHHHHHhhcc-c-----CCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCee
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHS-Y-----KPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQ 1127 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~-~-----~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q 1127 (1154)
.+++..|||||+++++||++|+..- + .+|+++|||||+++||+..+..+.++|.++. ..+..
T Consensus 118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~------------~~~~t 185 (213)
T cd03279 118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIR------------TENRM 185 (213)
T ss_pred cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH------------hCCCE
Confidence 4668899999999999999998642 1 2578999999999999999999999999993 23667
Q ss_pred EEEEEechhHHH-hccceEEEeecCC
Q 036401 1128 SIVISLKDSFYD-KAEALVGVYRDSD 1152 (1154)
Q Consensus 1128 ~i~it~~~~~~~-~~d~~~GV~~~~~ 1152 (1154)
+|+|||+..... .||+++ |..++|
T Consensus 186 ii~itH~~~~~~~~~~~i~-~~~~~~ 210 (213)
T cd03279 186 VGVISHVEELKERIPQRLE-VIKTPG 210 (213)
T ss_pred EEEEECchHHHHhhCcEEE-EEecCC
Confidence 999999987765 566664 444443
No 394
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.04 E-value=3e-10 Score=136.27 Aligned_cols=78 Identities=27% Similarity=0.351 Sum_probs=67.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||++|+.. |++++|||||++||+.++..+.++|.++ . ..+|+|||+
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~----p~lLLLDEPt~~LD~~~~~~l~~~L~~~------------~---~tvIiisHd 217 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSK----PDMLLLDEPTNHLDAESVAWLEQHLQEY------------P---GTVVAVTHD 217 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCChHHHHHHHHHHHhC------------C---CeEEEEeCC
Confidence 46789999999999999999987 9999999999999999999999999987 2 269999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++- +++|+
T Consensus 218 ~~~~~~~~d~v~~--l~~g~ 235 (552)
T TIGR03719 218 RYFLDNVAGWILE--LDRGR 235 (552)
T ss_pred HHHHHhhcCeEEE--EECCE
Confidence 77665 7999854 44553
No 395
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.04 E-value=3.1e-10 Score=136.07 Aligned_cols=78 Identities=27% Similarity=0.357 Sum_probs=67.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||||++++||.+|+.. |+++||||||++||+.++..+.++|.++ . ..+|+|||+
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~----p~vlLLDEPt~~LD~~~~~~l~~~L~~~------------~---~tviiisHd 219 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEK----PDMLLLDEPTNHLDAESVAWLEQFLHDY------------P---GTVVAVTHD 219 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCC----CCEEEEcCCCCcCChHHHHHHHHHHHhC------------C---CeEEEEeCC
Confidence 56789999999999999999987 9999999999999999999999999988 2 269999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
...+. .||+++- +++|+
T Consensus 220 ~~~~~~~~d~i~~--l~~g~ 237 (556)
T PRK11819 220 RYFLDNVAGWILE--LDRGR 237 (556)
T ss_pred HHHHHhhcCeEEE--EeCCE
Confidence 77665 8999854 44553
No 396
>PLN03073 ABC transporter F family; Provisional
Probab=99.03 E-value=3e-10 Score=137.67 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=67.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||++|+.. |+|+||||||++||+.++..+.+.|..+ .+ .+|+|||
T Consensus 622 ~~~~~~LSgGqkqRvaLAraL~~~----p~lLLLDEPT~~LD~~s~~~l~~~L~~~--------------~g-tvIivSH 682 (718)
T PLN03073 622 LQPMYTLSGGQKSRVAFAKITFKK----PHILLLDEPSNHLDLDAVEALIQGLVLF--------------QG-GVLMVSH 682 (718)
T ss_pred cCCccccCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCCHHHHHHHHHHHHHc--------------CC-EEEEEEC
Confidence 356789999999999999999987 9999999999999999999999988876 22 6999999
Q ss_pred chhHHH-hccceEEEeecCCC
Q 036401 1134 KDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
+..++. .||+++-+ .+|+
T Consensus 683 d~~~i~~~~drv~~l--~~G~ 701 (718)
T PLN03073 683 DEHLISGSVDELWVV--SEGK 701 (718)
T ss_pred CHHHHHHhCCEEEEE--ECCE
Confidence 977775 79998644 4453
No 397
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.03 E-value=3.5e-10 Score=135.67 Aligned_cols=75 Identities=27% Similarity=0.332 Sum_probs=66.8
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++ . + .+|+|||
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~------------~--~-~viivsH 498 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLKSG----GNVLLLDEPTNDLDVETLRALEEALLEF------------A--G-CAVVISH 498 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHC------------C--C-eEEEEeC
Confidence 456889999999999999999988 9999999999999999999999999998 2 3 4999999
Q ss_pred chhHHH-hccceEEE
Q 036401 1134 KDSFYD-KAEALVGV 1147 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV 1147 (1154)
+...+. .||+++-+
T Consensus 499 d~~~~~~~~d~i~~l 513 (552)
T TIGR03719 499 DRWFLDRIATHILAF 513 (552)
T ss_pred CHHHHHHhCCEEEEE
Confidence 977665 79998643
No 398
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=4e-10 Score=138.16 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=69.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCC-CCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKP-SPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p-~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
+.+.+|||||+|+++||.+|+.. | +++||||||+++||+..+..+.++|.++. ..+.++|+|||
T Consensus 483 r~~~tLSGGE~QRv~LA~aL~~~---~~~~llILDEPtagLD~~~~~~L~~~L~~L~------------~~G~TVIvVeH 547 (924)
T TIGR00630 483 RAAGTLSGGEAQRIRLATQIGSG---LTGVLYVLDEPSIGLHQRDNERLINTLKRLR------------DLGNTVIVVEH 547 (924)
T ss_pred CCcCcCCHHHHHHHHHHHHHhhC---CCCcEEEEcCCccCCCHHHHHHHHHHHHHHH------------hCCCEEEEEEC
Confidence 56789999999999999999865 2 37999999999999999999999999993 34678999999
Q ss_pred chhHHHhccceEEE
Q 036401 1134 KDSFYDKAEALVGV 1147 (1154)
Q Consensus 1134 ~~~~~~~~d~~~GV 1147 (1154)
+..++..||+++-+
T Consensus 548 d~~~i~~aD~vi~L 561 (924)
T TIGR00630 548 DEETIRAADYVIDI 561 (924)
T ss_pred CHHHHhhCCEEEEe
Confidence 99888999999543
No 399
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.01 E-value=4.2e-10 Score=135.12 Aligned_cols=79 Identities=23% Similarity=0.224 Sum_probs=68.2
Q ss_pred ccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhH
Q 036401 1058 EQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSF 1137 (1154)
Q Consensus 1058 ~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~ 1137 (1154)
..||||||||++||++|+-. ||++||||||++||+.+...+.+.|.... ...+.++|+|||+..+
T Consensus 448 ~~LSgGq~qRl~lARal~~~----~~ililDE~ts~LD~~~~~~i~~~l~~~~-----------~~~~~tvi~itH~~~~ 512 (547)
T PRK10522 448 LKLSKGQKKRLALLLALAEE----RDILLLDEWAADQDPHFRREFYQVLLPLL-----------QEMGKTIFAISHDDHY 512 (547)
T ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHH-----------HhCCCEEEEEEechHH
Confidence 58999999999999999887 99999999999999999999999887651 1136789999999999
Q ss_pred HHhccceEEEeecCCC
Q 036401 1138 YDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1138 ~~~~d~~~GV~~~~~~ 1153 (1154)
+..||+++ .+++|+
T Consensus 513 ~~~~d~i~--~l~~G~ 526 (547)
T PRK10522 513 FIHADRLL--EMRNGQ 526 (547)
T ss_pred HHhCCEEE--EEECCE
Confidence 99999994 456664
No 400
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.01 E-value=6.3e-10 Score=120.79 Aligned_cols=79 Identities=25% Similarity=0.293 Sum_probs=70.6
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
-..||||||||++||++|--. |-|+|||||.++||...-..+..-|...++ .+..+|+|||++.
T Consensus 470 G~~LSgGQRQRIaLARAlYG~----P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~------------rG~~vvviaHRPs 533 (580)
T COG4618 470 GATLSGGQRQRIALARALYGD----PFLVVLDEPNSNLDSEGEAALAAAILAAKA------------RGGTVVVIAHRPS 533 (580)
T ss_pred CCCCCchHHHHHHHHHHHcCC----CcEEEecCCCCCcchhHHHHHHHHHHHHHH------------cCCEEEEEecCHH
Confidence 458999999999999999766 999999999999999999999999999953 4556999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
.+..+|.+ .-|++|+
T Consensus 534 ~L~~~Dki--lvl~~G~ 548 (580)
T COG4618 534 ALASVDKI--LVLQDGR 548 (580)
T ss_pred HHhhccee--eeecCCh
Confidence 99999999 5577775
No 401
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.01 E-value=5.5e-10 Score=134.15 Aligned_cols=73 Identities=29% Similarity=0.398 Sum_probs=67.6
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
....||||||||++||++|.-. ||++||||||++||+.+...+.+.|..+ . ++..+|+|||+.
T Consensus 455 ~g~~LSgGq~qri~laRal~~~----~~ililDE~ts~lD~~~~~~i~~~l~~~------------~-~~~t~i~itH~~ 517 (529)
T TIGR02857 455 GGAGLSGGQAQRLALARAFLRD----APLLLLDEPTAHLDAETEALVTEALRAL------------A-QGRTVLLVTHRL 517 (529)
T ss_pred ccccCCHHHHHHHHHHHHHhcC----CCEEEEeCcccccCHHHHHHHHHHHHHh------------c-CCCEEEEEecCH
Confidence 3458999999999999999887 9999999999999999999999999998 3 578899999999
Q ss_pred hHHHhccceE
Q 036401 1136 SFYDKAEALV 1145 (1154)
Q Consensus 1136 ~~~~~~d~~~ 1145 (1154)
.++..||+++
T Consensus 518 ~~~~~~d~i~ 527 (529)
T TIGR02857 518 ALAERADRIV 527 (529)
T ss_pred HHHHhCCEEE
Confidence 9999999986
No 402
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.00 E-value=5.7e-10 Score=137.76 Aligned_cols=76 Identities=25% Similarity=0.272 Sum_probs=65.4
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||++||+++.-. ||++||||||++||+.+...+.+ .. . .++.++|+|||+..
T Consensus 615 G~~LSGGQkQRlalARALl~~----p~ILILDEpTSaLD~~te~~i~~-~~-~-------------~~~~TvIiItHrl~ 675 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRK----PRVLILDEATSALDAECEQLLQE-SR-S-------------RASRTVLLIAHRLS 675 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcC----CCEEEEEccccccCHHHHHHHHH-hh-c-------------cCCCeEEEEeccHH
Confidence 458999999999999999877 99999999999999999988888 22 2 25678999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||+++ .+++|+
T Consensus 676 ~i~~aD~Ii--vL~~G~ 690 (711)
T TIGR00958 676 TVERADQIL--VLKKGS 690 (711)
T ss_pred HHHhCCEEE--EEECCE
Confidence 999999994 456664
No 403
>PRK03918 chromosome segregation protein; Provisional
Probab=99.00 E-value=0.00054 Score=88.43 Aligned_cols=136 Identities=22% Similarity=0.276 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCCCCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHH
Q 036401 995 YGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLF 1074 (1154)
Q Consensus 995 ~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~ 1074 (1154)
......++..|+..+..+|..++ + ++...+.+.... ..+.+.+..+| ...++..|||||+++++||+.+
T Consensus 735 ~~l~~~~~~~l~~~~~~if~~l~-----~-~~~~~~~l~~~~----~~~~i~~l~~g-~~~~~~~lS~G~~~~~~la~rl 803 (880)
T PRK03918 735 ALLKERALSKVGEIASEIFEELT-----E-GKYSGVRVKAEE----NKVKLFVVYQG-KERPLTFLSGGERIALGLAFRL 803 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-----C-CCeeEEEEecCC----CceEEEEeCCC-CcCChhhCCHhHHHHHHHHHHH
Confidence 34445567788888889999984 2 221122221111 12344444444 3577899999999999999866
Q ss_pred hh--cccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEeecCC
Q 036401 1075 SI--HSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1075 a~--~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~~~~~ 1152 (1154)
|+ ..+.||||+||||||++||+.++..+.++|..+ ...+.|||||||++.++..||++|.|++.+|
T Consensus 804 al~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~------------~~~~~~iiiith~~~~~~~~d~~~~l~~~~~ 871 (880)
T PRK03918 804 ALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERY------------LRKIPQVIIVSHDEELKDAADYVIRVSLEGG 871 (880)
T ss_pred HHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHH------------HhcCCEEEEEECCHHHHHhCCeEEEEEecCC
Confidence 55 345789999999999999999999999999988 2346799999999999999999999998887
Q ss_pred C
Q 036401 1153 R 1153 (1154)
Q Consensus 1153 ~ 1153 (1154)
.
T Consensus 872 ~ 872 (880)
T PRK03918 872 V 872 (880)
T ss_pred e
Confidence 3
No 404
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.00 E-value=3.9e-10 Score=137.16 Aligned_cols=75 Identities=27% Similarity=0.312 Sum_probs=66.5
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||++++||.+|+.. |+|+||||||++||+.++..+.++|.++ . ..+|+|||
T Consensus 435 ~~~~~~LSgGekqRl~la~al~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~~------------~---~tvi~vSH 495 (635)
T PRK11147 435 MTPVKALSGGERNRLLLARLFLKP----SNLLILDEPTNDLDVETLELLEELLDSY------------Q---GTVLLVSH 495 (635)
T ss_pred hChhhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCCHHHHHHHHHHHHhC------------C---CeEEEEEC
Confidence 456889999999999999999987 9999999999999999999999999987 1 26999999
Q ss_pred chhHHH-hccceEEE
Q 036401 1134 KDSFYD-KAEALVGV 1147 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV 1147 (1154)
+..++. .||+++-+
T Consensus 496 d~~~~~~~~d~i~~l 510 (635)
T PRK11147 496 DRQFVDNTVTECWIF 510 (635)
T ss_pred CHHHHHHhcCEEEEE
Confidence 977664 89998644
No 405
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.00 E-value=6.1e-10 Score=145.63 Aligned_cols=76 Identities=21% Similarity=0.242 Sum_probs=68.1
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||+|||++|.-. ||++||||||++||+.+...|.+.|..+. ...+.++|+|||+..
T Consensus 1356 G~~LSGGQkQRIaIARALlr~----p~ILLLDEaTSaLD~~sE~~I~~~L~~~~-----------~~~~~TvIiIaHRls 1420 (1466)
T PTZ00265 1356 GKSLSGGQKQRIAIARALLRE----PKILLLDEATSSLDSNSEKLIEKTIVDIK-----------DKADKTIITIAHRIA 1420 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHhcC----CCEEEEeCcccccCHHHHHHHHHHHHHHh-----------ccCCCEEEEEechHH
Confidence 457999999999999999988 99999999999999999999999999872 024678999999999
Q ss_pred HHHhccceEEE
Q 036401 1137 FYDKAEALVGV 1147 (1154)
Q Consensus 1137 ~~~~~d~~~GV 1147 (1154)
++..||+++-+
T Consensus 1421 ti~~aD~Ivvl 1431 (1466)
T PTZ00265 1421 SIKRSDKIVVF 1431 (1466)
T ss_pred HHHhCCEEEEE
Confidence 99999999643
No 406
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.00 E-value=7.4e-10 Score=109.83 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=64.2
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..++..+||-||++++-||+++..+ |+++|||||++|||..++..+.++|.++. ...+..++|+||
T Consensus 165 a~r~~~~LS~Ge~rrvLiaRALv~~----P~LLiLDEP~~GLDl~~re~ll~~l~~~~----------~~~~~~~ll~Vt 230 (257)
T COG1119 165 ADRPFGSLSQGEQRRVLIARALVKD----PELLILDEPAQGLDLIAREQLLNRLEELA----------ASPGAPALLFVT 230 (257)
T ss_pred ccCchhhcCHhHHHHHHHHHHHhcC----CCEEEecCccccCChHHHHHHHHHHHHHh----------cCCCCceEEEEE
Confidence 4578899999999999999999999 99999999999999999999999999993 233588999999
Q ss_pred echhHH
Q 036401 1133 LKDSFY 1138 (1154)
Q Consensus 1133 ~~~~~~ 1138 (1154)
|+.+-+
T Consensus 231 Hh~eEi 236 (257)
T COG1119 231 HHAEEI 236 (257)
T ss_pred cchhhc
Confidence 995444
No 407
>PLN03211 ABC transporter G-25; Provisional
Probab=98.99 E-value=5.5e-10 Score=134.77 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=70.1
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
.+..||||||+|++||+.|+.. ||+++|||||+|||+.++..+.++|+++. ..+..+|++||++
T Consensus 203 ~~~~LSgGerqRv~ia~aL~~~----P~iLlLDEPtsgLD~~~~~~l~~~L~~l~------------~~g~TvI~~sH~~ 266 (659)
T PLN03211 203 FIRGISGGERKRVSIAHEMLIN----PSLLILDEPTSGLDATAAYRLVLTLGSLA------------QKGKTIVTSMHQP 266 (659)
T ss_pred CCCCcChhhhhHHHHHHHHHhC----CCEEEEeCCCCCcCHHHHHHHHHHHHHHH------------hCCCEEEEEecCC
Confidence 4678999999999999999998 99999999999999999999999999993 3467899999997
Q ss_pred h--HHHhccceEEEeecCCC
Q 036401 1136 S--FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~--~~~~~d~~~GV~~~~~~ 1153 (1154)
. ++..+|+++ .+.+|+
T Consensus 267 ~~~i~~~~D~ii--lL~~G~ 284 (659)
T PLN03211 267 SSRVYQMFDSVL--VLSEGR 284 (659)
T ss_pred CHHHHHhhceEE--EecCCc
Confidence 5 578999995 445554
No 408
>PLN03073 ABC transporter F family; Provisional
Probab=98.99 E-value=4.7e-10 Score=135.98 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=67.1
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..||||||++++||.+|+.. |++++|||||++||+.++..+.++|..+ +..+|+|||
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~----p~lLlLDEPt~~LD~~~~~~l~~~L~~~---------------~~tviivsH 399 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIE----PDLLLLDEPTNHLDLHAVLWLETYLLKW---------------PKTFIVVSH 399 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHc---------------CCEEEEEEC
Confidence 456889999999999999999988 9999999999999999999999999987 246999999
Q ss_pred chhHHH-hccceEEE
Q 036401 1134 KDSFYD-KAEALVGV 1147 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV 1147 (1154)
+...+. .||+++-+
T Consensus 400 d~~~l~~~~d~i~~l 414 (718)
T PLN03073 400 AREFLNTVVTDILHL 414 (718)
T ss_pred CHHHHHHhCCEEEEE
Confidence 977765 79999544
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.98 E-value=7.5e-10 Score=136.06 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=69.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCC-CCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKP-SPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p-~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
+.+..|||||+|+++||.+|+.. | +++||||||+++||+..+..+.++|..+. ..+.++|||||
T Consensus 485 r~~~~LSgGE~QRv~LA~aL~~~---~~~~llILDEPtagLd~~~~~~L~~~L~~L~------------~~G~TVIvVeH 549 (943)
T PRK00349 485 RSAGTLSGGEAQRIRLATQIGSG---LTGVLYVLDEPSIGLHQRDNDRLIETLKHLR------------DLGNTLIVVEH 549 (943)
T ss_pred CchhhCCHHHHHHHHHHHHHhhC---CCCcEEEecCCccCCCHHHHHHHHHHHHHHH------------hCCCEEEEEeC
Confidence 57889999999999999999976 2 37999999999999999999999999993 34678999999
Q ss_pred chhHHHhccceEEEee
Q 036401 1134 KDSFYDKAEALVGVYR 1149 (1154)
Q Consensus 1134 ~~~~~~~~d~~~GV~~ 1149 (1154)
+...+..||++ |.+
T Consensus 550 ~~~~i~~aD~v--i~L 563 (943)
T PRK00349 550 DEDTIRAADYI--VDI 563 (943)
T ss_pred CHHHHHhCCEE--EEe
Confidence 98888899998 455
No 410
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.97 E-value=8e-10 Score=132.49 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=66.3
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..||||||++++||++|+.. |+++||||||++||+.++..+.++|.++ . + .+|+|||
T Consensus 440 ~~~~~~LSgG~~qrv~la~al~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~------------~--~-tvi~vtH 500 (556)
T PRK11819 440 QKKVGVLSGGERNRLHLAKTLKQG----GNVLLLDEPTNDLDVETLRALEEALLEF------------P--G-CAVVISH 500 (556)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcC----CCEEEEcCCCCCCCHHHHHHHHHHHHhC------------C--C-eEEEEEC
Confidence 456889999999999999999987 9999999999999999999999999998 2 3 4999999
Q ss_pred chhHH-HhccceEEE
Q 036401 1134 KDSFY-DKAEALVGV 1147 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV 1147 (1154)
+...+ ..||+++-+
T Consensus 501 d~~~~~~~~d~i~~l 515 (556)
T PRK11819 501 DRWFLDRIATHILAF 515 (556)
T ss_pred CHHHHHHhCCEEEEE
Confidence 97766 489998643
No 411
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.97 E-value=0.0008 Score=88.07 Aligned_cols=113 Identities=25% Similarity=0.378 Sum_probs=62.3
Q ss_pred Cce-eecCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc-cccc----ccchhhhcccch-----hhhcccceEEEEEE
Q 036401 23 GLQ-IIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LRGG----QLKDLIYAYDDK-----EKEQKGRRAFVRLV 91 (1154)
Q Consensus 23 ~~~-~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r~~----~~~~~I~~g~~~-----~~~~~~~~a~v~~~ 91 (1154)
|.. .|. ..|.|-|+|-||+||||++.||.|--|..+.+ +++. +..++=+-..++ ..+..+..|.|-++
T Consensus 9 G~v~El~-lDG~t~i~GTNG~GKTTlLRlip~FYGa~p~rlv~k~~~rksF~~yYLP~~nSyIIYEY~R~~G~~~~vvl~ 87 (1201)
T PF12128_consen 9 GVVAELK-LDGHTHICGTNGVGKTTLLRLIPFFYGADPSRLVPKTSGRKSFDDYYLPYSNSYIIYEYQREDGQLCCVVLS 87 (1201)
T ss_pred CceEEEe-cCCceeeecCCCCcHHHHHHHHHHhcCCCccccCCccchhhhHHHHcCCCCCceEEEeeeccCCceeEEEEe
Confidence 444 454 35788999999999999999999999988766 3322 222222221111 01222323444443
Q ss_pred EEeCCCceEEEEEEEecCCCeEEEEC--C----ccccHHHHHHHHHhcCCccc
Q 036401 92 YQLGNESELQFTRTITSSGGSEYRID--G----RVVNWDEYNAKLRSLGILVK 138 (1154)
Q Consensus 92 ~~~~~~~~~~i~R~i~~~g~s~y~in--~----~~~~~~~~~~~l~~~~i~~~ 138 (1154)
.. ++|.-|. -|=|..+=...|||+ + .+.+..++...+...||.+.
T Consensus 88 ~~-s~g~~V~-YRFId~~y~~e~fi~~~~~~~~~~~~~~e~~r~~~~~gv~~S 138 (1201)
T PF12128_consen 88 RK-SDGRGVQ-YRFIDAPYQRELFIDENNGDLVQALSMWELIRELRRKGVQVS 138 (1201)
T ss_pred ec-CCCCcee-eeeccCccchhhcccccCccccccccHHHHHHHHHhCCCeee
Confidence 32 2221111 222222223456663 3 34566778788888888774
No 412
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.97 E-value=5.6e-10 Score=110.14 Aligned_cols=51 Identities=37% Similarity=0.498 Sum_probs=44.7
Q ss_pred EEEecceeccCceeecCCCC-eEEEEcCCCCCHHHHHHHHHHHhCccccc-cc
Q 036401 13 LELENFKSYKGLQIIGPFSD-FTAIIGPNGAGKSNLMDAISFVLGVRTGQ-LR 63 (1154)
Q Consensus 13 l~l~nFks~~~~~~i~~~~~-~~~IvG~NGsGKS~ildAi~~~lg~~~~~-~r 63 (1154)
|.+.||+||.....+.++++ +++|+|||||||||+++||+|++|...+. .|
T Consensus 2 i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~ 54 (162)
T cd03227 2 IVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR 54 (162)
T ss_pred ceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc
Confidence 67899999988887866665 99999999999999999999999988765 55
No 413
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.97 E-value=1.5e-09 Score=100.06 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=73.3
Q ss_pred CCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeE
Q 036401 1049 PPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQS 1128 (1154)
Q Consensus 1049 ~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~ 1128 (1154)
++..-...|..+|||++|++.||.-+... |.++||||||.+||..-..++.++++.+..+ -+.-+
T Consensus 141 ~~~RiDD~PrtFSGGMqQRLQiARnLVt~----PrLvfMDEPTGGLDVSVQARLLDllrgLv~~-----------l~la~ 205 (258)
T COG4107 141 DLDRIDDLPRTFSGGMQQRLQIARNLVTR----PRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-----------LGLAV 205 (258)
T ss_pred CcccccCcccccchHHHHHHHHHHHhccC----CceEEecCCCCCcchhhHHHHHHHHHHHHHh-----------cCceE
Confidence 34444456889999999999999999888 9999999999999999999999999998532 34559
Q ss_pred EEEEechhHHH-hccceEEEeecCCC
Q 036401 1129 IVISLKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1129 i~it~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
|||||+..++. .||++ ..|..|+
T Consensus 206 viVTHDl~VarLla~rl--mvmk~g~ 229 (258)
T COG4107 206 VIVTHDLAVARLLADRL--MVMKQGQ 229 (258)
T ss_pred EEEechhHHHHHhhhcc--eeecCCC
Confidence 99999988886 78998 4566553
No 414
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.94 E-value=1.2e-09 Score=142.86 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=72.3
Q ss_pred CcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1052 KRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1052 ~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
+..+.+..||||||++++||.+|+.. |++++|||||+|||+..+..+.++|.++ . .+..+|++
T Consensus 1054 ~~~~~~~~LSGGqKQRLsLArALi~~----PkVLLLDEPTSGLDp~sr~~l~~lL~~l------------~-~g~TIIlt 1116 (2272)
T TIGR01257 1054 KRNEEAQDLSGGMQRKLSVAIAFVGD----AKVVVLDEPTSGVDPYSRRSIWDLLLKY------------R-SGRTIIMS 1116 (2272)
T ss_pred hhcCChhhCCHHHHHHHHHHHHHHcC----CCEEEEECCCcCCCHHHHHHHHHHHHHH------------h-CCCEEEEE
Confidence 34567889999999999999999998 9999999999999999999999999999 3 46679999
Q ss_pred EechhHHH-hccceEEEeecCCC
Q 036401 1132 SLKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1132 t~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
||+.+.+. .||+++ .|.+|+
T Consensus 1117 THdmdea~~laDrI~--iL~~Gk 1137 (2272)
T TIGR01257 1117 THHMDEADLLGDRIA--IISQGR 1137 (2272)
T ss_pred ECCHHHHHHhCCEEE--EEECCE
Confidence 99977665 899984 455664
No 415
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.94 E-value=1.2e-09 Score=142.84 Aligned_cols=81 Identities=23% Similarity=0.260 Sum_probs=70.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.....||||||||++||++|+.. ||++||||||++||+.+...+.+.|.++. ...+..+|+|||+
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~----P~ILlLDEpTSaLD~~se~~i~~~L~~~~-----------~~~g~TvIiIsHr 639 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRN----PKILILDEATSSLDNKSEYLVQKTINNLK-----------GNENRITIIIAHR 639 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcC----CCEEEEeCcccccCHHHHHHHHHHHHHHh-----------hcCCCEEEEEeCC
Confidence 34678999999999999999988 99999999999999999999999999982 1136789999999
Q ss_pred hhHHHhccceEEEeecCC
Q 036401 1135 DSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~ 1152 (1154)
..++..||+++ .|++|
T Consensus 640 ls~i~~aD~Ii--vl~~g 655 (1466)
T PTZ00265 640 LSTIRYANTIF--VLSNR 655 (1466)
T ss_pred HHHHHhCCEEE--EEeCC
Confidence 99999999995 44544
No 416
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.94 E-value=1.1e-09 Score=126.25 Aligned_cols=76 Identities=25% Similarity=0.221 Sum_probs=68.6
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||||.|+.||.++.-. |.|+||||||-+||...+..+.+.|.++ ...+|+|||
T Consensus 434 ~~~v~~LSGGEk~Rl~La~ll~~~----pNvLiLDEPTNhLDi~s~~aLe~aL~~f---------------~Gtvl~VSH 494 (530)
T COG0488 434 EKPVGVLSGGEKARLLLAKLLLQP----PNLLLLDEPTNHLDIESLEALEEALLDF---------------EGTVLLVSH 494 (530)
T ss_pred hCchhhcCHhHHHHHHHHHHhccC----CCEEEEcCCCccCCHHHHHHHHHHHHhC---------------CCeEEEEeC
Confidence 467889999999999999999764 9999999999999999999999999998 345999999
Q ss_pred chhHHH-hccceEEEe
Q 036401 1134 KDSFYD-KAEALVGVY 1148 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV~ 1148 (1154)
+..++. .|+++|-|.
T Consensus 495 Dr~Fl~~va~~i~~~~ 510 (530)
T COG0488 495 DRYFLDRVATRIWLVE 510 (530)
T ss_pred CHHHHHhhcceEEEEc
Confidence 999997 889988665
No 417
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.94 E-value=1.1e-09 Score=143.27 Aligned_cols=82 Identities=20% Similarity=0.110 Sum_probs=70.9
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.++.||||||++++||++|+.. ||+++||||++|||+.++..+.++|.++. ..+..+|++||
T Consensus 2065 dk~~~~LSGGqKqRLslA~ALi~~----P~VLLLDEPTsGLDp~sr~~l~~lL~~l~------------~~g~TIILtTH 2128 (2272)
T TIGR01257 2065 DRLAGTYSGGNKRKLSTAIALIGC----PPLVLLDEPTTGMDPQARRMLWNTIVSII------------REGRAVVLTSH 2128 (2272)
T ss_pred cCChhhCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEEeC
Confidence 356789999999999999999998 99999999999999999999999999983 24667999999
Q ss_pred chhHH-HhccceEEEeecCCC
Q 036401 1134 KDSFY-DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~-~~~d~~~GV~~~~~~ 1153 (1154)
+.+.+ ..||+++ .|.+|+
T Consensus 2129 ~mee~e~lcDrV~--IL~~G~ 2147 (2272)
T TIGR01257 2129 SMEECEALCTRLA--IMVKGA 2147 (2272)
T ss_pred CHHHHHHhCCEEE--EEECCE
Confidence 96655 4899984 456664
No 418
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.94 E-value=1.7e-09 Score=131.71 Aligned_cols=72 Identities=32% Similarity=0.374 Sum_probs=65.7
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...|||||||+++||++|+.. ||++||||||++||+.+...+.+.+.+. +..+|+|||+..
T Consensus 580 ~~~LSgGqkQRl~iARal~~~----p~illLDEpts~LD~~~~~~l~~~l~~~---------------~~tvI~isH~~~ 640 (659)
T TIGR00954 580 MDVLSGGEKQRIAMARLFYHK----PQFAILDECTSAVSVDVEGYMYRLCREF---------------GITLFSVSHRKS 640 (659)
T ss_pred ccCCCHHHHHHHHHHHHHHcC----CCEEEEeCCccCCCHHHHHHHHHHHHHc---------------CCEEEEEeCchH
Confidence 468999999999999999988 9999999999999999999999988764 466999999999
Q ss_pred HHHhccceEEE
Q 036401 1137 FYDKAEALVGV 1147 (1154)
Q Consensus 1137 ~~~~~d~~~GV 1147 (1154)
+...||+++-+
T Consensus 641 ~~~~~d~il~l 651 (659)
T TIGR00954 641 LWKYHEYLLYM 651 (659)
T ss_pred HHHhCCEEEEE
Confidence 99999999744
No 419
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.93 E-value=1.4e-09 Score=125.52 Aligned_cols=75 Identities=27% Similarity=0.360 Sum_probs=68.3
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+++..||||+|.|++||.+|.-. |++++|||||.+||...+.-+-++|..+ ++ .+|||||
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~----pDlLLLDEPTNHLD~~~i~WLe~~L~~~--------------~g-tviiVSH 208 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEE----PDLLLLDEPTNHLDLESIEWLEDYLKRY--------------PG-TVIVVSH 208 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcC----CCEEEEcCCCcccCHHHHHHHHHHHHhC--------------CC-cEEEEeC
Confidence 467899999999999999999877 9999999999999999999999999988 34 7999999
Q ss_pred chhHHH-hccceEEE
Q 036401 1134 KDSFYD-KAEALVGV 1147 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV 1147 (1154)
+..+.. +|+.++-+
T Consensus 209 DR~FLd~V~t~I~~l 223 (530)
T COG0488 209 DRYFLDNVATHILEL 223 (530)
T ss_pred CHHHHHHHhhheEEe
Confidence 999997 88888654
No 420
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.93 E-value=1.3e-09 Score=132.55 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=70.8
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
.+..|||||+++++||++|+.. |+++|||||+++||+.++..+.++|.++. ..+.++|+|||+.
T Consensus 141 ~~~~LS~Gq~qrv~LAraL~~~----P~lLllDEP~~gLD~~s~~~l~~ll~~l~------------~~g~tilivsH~~ 204 (648)
T PRK10535 141 QPSQLSGGQQQRVSIARALMNG----GQVILADEPTGALDSHSGEEVMAILHQLR------------DRGHTVIIVTHDP 204 (648)
T ss_pred CcccCCHHHHHHHHHHHHHhcC----CCEEEEECCCCCCCHHHHHHHHHHHHHHH------------hcCCEEEEECCCH
Confidence 4568999999999999999998 99999999999999999999999999983 3477899999998
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.....||+++ .+++|+
T Consensus 205 ~~~~~~d~i~--~l~~G~ 220 (648)
T PRK10535 205 QVAAQAERVI--EIRDGE 220 (648)
T ss_pred HHHHhCCEEE--EEECCE
Confidence 8888999994 445554
No 421
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.92 E-value=5.4e-10 Score=105.67 Aligned_cols=95 Identities=21% Similarity=0.329 Sum_probs=79.1
Q ss_pred cccceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCC
Q 036401 1041 HGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDA 1120 (1154)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a 1120 (1154)
..++|.... +-..+++.+||||+|||+-||.+||-. .+|++||||..+||......+++.|+.+..+
T Consensus 118 ~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQd----TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e-------- 184 (252)
T COG4604 118 EAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQD----TDYVLLDEPLNNLDMKHSVQIMKILRRLADE-------- 184 (252)
T ss_pred HHHHHhccc-chHHHhHHhcccchhhhhhhheeeecc----CcEEEecCcccccchHHHHHHHHHHHHHHHH--------
Confidence 345544332 335688999999999999999999988 9999999999999999999999999999422
Q ss_pred CCCCCeeEEEEEechhHHH-hccceEEEeecCCC
Q 036401 1121 DEGNGFQSIVISLKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1121 ~~~~~~q~i~it~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
-+..+|+|=|+.++++ .+|.+ |-|.+|+
T Consensus 185 ---l~KtiviVlHDINfAS~YsD~I--VAlK~G~ 213 (252)
T COG4604 185 ---LGKTIVVVLHDINFASCYSDHI--VALKNGK 213 (252)
T ss_pred ---hCCeEEEEEecccHHHhhhhhe--eeecCCE
Confidence 4667999999999987 89998 6677775
No 422
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.92 E-value=0.00091 Score=85.41 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=33.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036401 235 WQLFNIEKDITKASKDLEAEKRS----REEVMRELEHFEDQKRGKRKELAKYLKEIAQCEKKIAERNNRLDK 302 (1154)
Q Consensus 235 ~~l~~~~~~l~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~l~~ 302 (1154)
....++..++....+.+..+..+ +..+...+..+...+..+...+..+..+...+...+......+..
T Consensus 192 s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~ 263 (1822)
T KOG4674|consen 192 SENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSK 263 (1822)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544 445555555555555555544444444444444444444444333
No 423
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.7e-09 Score=117.59 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=69.3
Q ss_pred CCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeE
Q 036401 1049 PPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQS 1128 (1154)
Q Consensus 1049 ~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~ 1128 (1154)
++.-..+++.+||||||+++++|-+.-.. |.|+||||||.+||......+..-|+.+ . .=+
T Consensus 472 ~g~la~~si~~LSGGQKsrvafA~~~~~~----PhlLVLDEPTNhLD~dsl~AL~~Al~~F------------~---GGV 532 (582)
T KOG0062|consen 472 SGELALQSIASLSGGQKSRVAFAACTWNN----PHLLVLDEPTNHLDRDSLGALAKALKNF------------N---GGV 532 (582)
T ss_pred CchhhhccccccCCcchhHHHHHHHhcCC----CcEEEecCCCccccHHHHHHHHHHHHhc------------C---CcE
Confidence 33334456889999999999999888777 9999999999999999999999999999 2 229
Q ss_pred EEEEechhHHH-hccceEEE
Q 036401 1129 IVISLKDSFYD-KAEALVGV 1147 (1154)
Q Consensus 1129 i~it~~~~~~~-~~d~~~GV 1147 (1154)
|+|||+.+++. .|+-+|-|
T Consensus 533 v~VSHd~~fi~~~c~E~Wvv 552 (582)
T KOG0062|consen 533 VLVSHDEEFISSLCKELWVV 552 (582)
T ss_pred EEEECcHHHHhhcCceeEEE
Confidence 99999999997 89999866
No 424
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.91 E-value=1.7e-09 Score=138.79 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=68.9
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCC--CeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPS--PFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~--~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
+.+..|||||+|+++||.+|+.. | ++||||||+++||+..+..+.++|+.+. ..+.++|+||
T Consensus 472 R~~~tLSGGE~QRV~LAraL~~~----p~g~lLILDEPTagLD~~~~~~L~~lL~~L~------------~~G~TVIvVe 535 (1809)
T PRK00635 472 RALATLSGGEQERTALAKHLGAE----LIGITYILDEPSIGLHPQDTHKLINVIKKLR------------DQGNTVLLVE 535 (1809)
T ss_pred CchhhCCHHHHHHHHHHHHHhcC----CCCcEEEEECCccCCCHHHHHHHHHHHHHHH------------hCCCEEEEEe
Confidence 56789999999999999999865 5 7999999999999999999999999993 3467899999
Q ss_pred echhHHHhccceEEE
Q 036401 1133 LKDSFYDKAEALVGV 1147 (1154)
Q Consensus 1133 ~~~~~~~~~d~~~GV 1147 (1154)
|+..++..||+++-+
T Consensus 536 Hd~~vi~~aDrVi~L 550 (1809)
T PRK00635 536 HDEQMISLADRIIDI 550 (1809)
T ss_pred CcHHHHHhCCEEEEE
Confidence 998889999999643
No 425
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.90 E-value=2.2e-09 Score=130.41 Aligned_cols=79 Identities=27% Similarity=0.299 Sum_probs=71.1
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
...+||||||||+|||+++.-. |++++|||.|++||...-+.+-+-|... . .+.+.|+|.||.
T Consensus 1123 rG~QLSGGQKQRIAIARAilRn----PkILLLDEATSALDseSErvVQeALd~a------------~-~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRN----PKILLLDEATSALDSESERVVQEALDRA------------M-EGRTTIVIAHRL 1185 (1228)
T ss_pred ccCcCCchHHHHHHHHHHHHcC----CCeeeeeccchhhhhhhHHHHHHHHHHh------------h-cCCcEEEEecch
Confidence 3559999999999999999888 9999999999999999999999999988 3 678899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..||.++ .+++|+
T Consensus 1186 STIqnaD~I~--Vi~~G~ 1201 (1228)
T KOG0055|consen 1186 STIQNADVIA--VLKNGK 1201 (1228)
T ss_pred hhhhcCCEEE--EEECCE
Confidence 9999999994 456664
No 426
>PLN03232 ABC transporter C family member; Provisional
Probab=98.87 E-value=3.7e-09 Score=139.99 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=70.9
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||||||||++||++|.-. ||++|||||||+||+.+-..+.+.|++. . ++.++|+||||..
T Consensus 1369 G~~LSgGQrQrlaLARALLr~----~~ILILDEATSaLD~~Te~~Iq~~L~~~------------~-~~~TvI~IAHRl~ 1431 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRR----SKILVLDEATASVDVRTDSLIQRTIREE------------F-KSCTMLVIAHRLN 1431 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhC----CCEEEEECCcccCCHHHHHHHHHHHHHH------------c-CCCEEEEEeCCHH
Confidence 457999999999999999877 9999999999999999999999999988 3 6788999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ +.|++|+
T Consensus 1432 ti~~~DrI--lVL~~G~ 1446 (1495)
T PLN03232 1432 TIIDCDKI--LVLSSGQ 1446 (1495)
T ss_pred HHHhCCEE--EEEECCE
Confidence 99999999 5567775
No 427
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.87 E-value=3.7e-09 Score=112.95 Aligned_cols=84 Identities=25% Similarity=0.291 Sum_probs=74.0
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
..++++.|||||-|++|||.+++-. ++||+||||+++||...|-.++..|+++ +.++.-+|+|-
T Consensus 207 l~r~v~~LSGGELQr~aIaa~l~rd----ADvY~FDEpsSyLDi~qRl~~ar~Irel------------~~~~k~ViVVE 270 (591)
T COG1245 207 LDRDVSELSGGELQRVAIAAALLRD----ADVYFFDEPSSYLDIRQRLNAARVIREL------------AEDGKYVIVVE 270 (591)
T ss_pred hhhhhhhcCchHHHHHHHHHHHhcc----CCEEEEcCCcccccHHHHHHHHHHHHHH------------hccCCeEEEEe
Confidence 4578999999999999999999888 9999999999999999999999999999 33467799999
Q ss_pred echhHHH-hccceEEEeecCC
Q 036401 1133 LKDSFYD-KAEALVGVYRDSD 1152 (1154)
Q Consensus 1133 ~~~~~~~-~~d~~~GV~~~~~ 1152 (1154)
|+..+.. ++|.+.-+|=.+|
T Consensus 271 HDLavLD~lsD~vhI~YG~pg 291 (591)
T COG1245 271 HDLAVLDYLSDFVHILYGEPG 291 (591)
T ss_pred chHHHHHHhhheeEEEecCCc
Confidence 9988887 6887766665555
No 428
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.86 E-value=4e-09 Score=101.56 Aligned_cols=82 Identities=26% Similarity=0.405 Sum_probs=65.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.++..||||||| ||+|+||.. .||.+++|||-||+|||.....+++.=.++. ...+-.-++|||+
T Consensus 144 ~~iglLSGGQRQ--alsL~MAtl--~~pkiLLLDEHTAALDPkta~~vm~lT~kiV-----------~~~klTtlMVTHn 208 (263)
T COG1101 144 DRIGLLSGGQRQ--ALSLLMATL--HPPKILLLDEHTAALDPKTAEFVMELTAKIV-----------EEHKLTTLMVTHN 208 (263)
T ss_pred ChhhhccchHHH--HHHHHHHhc--CCCcEEEecchhhcCCcchHHHHHHHHHHHH-----------HhcCCceEEEecc
Confidence 467899999999 555555543 6799999999999999999999998877774 2246679999999
Q ss_pred -hhHHHhccceEEEeecCCC
Q 036401 1135 -DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 -~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+.+.+++ |-+++|+
T Consensus 209 m~~Al~yG~Rl--ImLh~G~ 226 (263)
T COG1101 209 MEDALDYGNRL--IMLHSGK 226 (263)
T ss_pred HHHHHhhCCeE--EEEeCCe
Confidence 5666789999 6677775
No 429
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.86 E-value=3e-09 Score=127.78 Aligned_cols=62 Identities=27% Similarity=0.314 Sum_probs=57.0
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
...||||||||++||++|.-. ||++||||||++||+.+...+.+.|..+ . ++.++|+|||+.
T Consensus 468 G~~LSGGQrQRiaiARall~~----~~iliLDE~TSaLD~~te~~I~~~l~~~------------~-~~~TvIiItHrl 529 (529)
T TIGR02868 468 GARLSGGERQRLALARALLAD----APILLLDEPTEHLDAGTESELLEDLLAA------------L-SGKTVVVITHHL 529 (529)
T ss_pred cCcCCHHHHHHHHHHHHHhcC----CCEEEEeCCcccCCHHHHHHHHHHHHHh------------c-CCCEEEEEecCC
Confidence 457999999999999999877 9999999999999999999999999988 2 678999999983
No 430
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.85 E-value=4.8e-09 Score=139.18 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=70.9
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...|||||||+++||++|.-. ||++||||||++||+.+-..+.+.|++. . ++.++|+|||+..
T Consensus 1419 G~~LSgGQrQrl~LARALLr~----~~ILiLDEaTSalD~~Te~~Iq~~l~~~------------~-~~~TvI~IAHRl~ 1481 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRK----TKILVLDEATAAVDLETDNLIQSTIRTQ------------F-EDCTVLTIAHRLN 1481 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcC----CCEEEEECCcccCCHHHHHHHHHHHHHH------------c-CCCEEEEEecCHH
Confidence 357999999999999999876 9999999999999999999999999987 3 6788999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ +.|++|+
T Consensus 1482 ti~~~DrI--lVld~G~ 1496 (1522)
T TIGR00957 1482 TIMDYTRV--IVLDKGE 1496 (1522)
T ss_pred HHHhCCEE--EEEECCE
Confidence 99999999 5577775
No 431
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.85 E-value=6.6e-09 Score=103.28 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=72.8
Q ss_pred CcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1052 KRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1052 ~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
........||+|++.++-||++||.. |++++||||.|||.+.....+.++|+++.+ ..+..|++|
T Consensus 142 ~a~~~A~~LsyG~qR~LEIArALa~~----P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-----------~~g~tillI 206 (250)
T COG0411 142 LADRPAGNLSYGQQRRLEIARALATQ----PKLLLLDEPAAGLNPEETEELAELIRELRD-----------RGGVTILLI 206 (250)
T ss_pred hhcchhhcCChhHhHHHHHHHHHhcC----CCEEEecCccCCCCHHHHHHHHHHHHHHHh-----------cCCcEEEEE
Confidence 34466789999999999999999999 999999999999999999999999999942 134779999
Q ss_pred Eech-hHHHhccceEEEeecCCC
Q 036401 1132 SLKD-SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1132 t~~~-~~~~~~d~~~GV~~~~~~ 1153 (1154)
-|+. -+|..||++| -|+.|+
T Consensus 207 EHdM~~Vm~l~dri~--Vl~~G~ 227 (250)
T COG0411 207 EHDMKLVMGLADRIV--VLNYGE 227 (250)
T ss_pred EeccHHHhhhccEEE--eccCCc
Confidence 9994 5667999995 466654
No 432
>PLN03130 ABC transporter C family member; Provisional
Probab=98.84 E-value=5.5e-09 Score=138.30 Aligned_cols=78 Identities=23% Similarity=0.267 Sum_probs=71.2
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...|||||||+++||++|.-. ||++||||||++||+.+-..+.+.|++. . .+.++|+|+||..
T Consensus 1372 G~nLSgGQrQrlaLARALLr~----p~ILILDEATSaLD~~Te~~Iq~~I~~~------------~-~~~TvI~IAHRL~ 1434 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRR----SKILVLDEATAAVDVRTDALIQKTIREE------------F-KSCTMLIIAHRLN 1434 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcC----CCEEEEECCCCCCCHHHHHHHHHHHHHH------------C-CCCEEEEEeCChH
Confidence 458999999999999999876 9999999999999999999999999988 3 6788999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ +.|++|+
T Consensus 1435 tI~~~DrI--lVLd~G~ 1449 (1622)
T PLN03130 1435 TIIDCDRI--LVLDAGR 1449 (1622)
T ss_pred HHHhCCEE--EEEECCE
Confidence 99999999 4577775
No 433
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.84 E-value=4e-09 Score=127.67 Aligned_cols=79 Identities=20% Similarity=0.335 Sum_probs=69.4
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech-
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD- 1135 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~- 1135 (1154)
...||||||+|++||+.|+.. |++++|||||+|||+.+...+.+.|+.++ ..+..+|++||++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~----p~vlllDEPtsgLD~~~~~~l~~~L~~l~------------~~g~tvi~~~hq~~ 227 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTD----PPLLFCDEPTSGLDSFMAYSVVQVLKGLA------------QKGKTIICTIHQPS 227 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcC----CCEEEeeCCCcchhHHHHHHHHHHHHHHH------------hCCCEEEEEeCCCC
Confidence 458999999999999999988 99999999999999999999999999993 3467799999996
Q ss_pred -hHHHhccceEEEeecCCC
Q 036401 1136 -SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 -~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..+|+++ .+.+|+
T Consensus 228 ~~i~~~~D~i~--ll~~G~ 244 (617)
T TIGR00955 228 SELFELFDKII--LMAEGR 244 (617)
T ss_pred HHHHHHhceEE--EeeCCe
Confidence 4688999994 455664
No 434
>PTZ00243 ABC transporter; Provisional
Probab=98.84 E-value=5.6e-09 Score=138.06 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=70.5
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...|||||||+++||++|.-. |||++||||||++||+.+-..+.+.|... . .+.++|+|||+..
T Consensus 1443 G~nLSgGQrQrLaLARALL~~---~~~ILlLDEATSaLD~~te~~Iq~~L~~~------------~-~~~TvI~IAHRl~ 1506 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKK---GSGFILMDEATANIDPALDRQIQATVMSA------------F-SAYTVITIAHRLH 1506 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcC---CCCEEEEeCCCccCCHHHHHHHHHHHHHH------------C-CCCEEEEEeccHH
Confidence 357999999999999999752 48999999999999999999999999987 2 6788999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ +.|++|+
T Consensus 1507 ti~~~DrI--lVLd~G~ 1521 (1560)
T PTZ00243 1507 TVAQYDKI--IVMDHGA 1521 (1560)
T ss_pred HHHhCCEE--EEEECCE
Confidence 99999999 5677775
No 435
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.83 E-value=5.5e-09 Score=138.11 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=70.7
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...|||||||+++||++|.-. ||++||||||++||+.+-..+.+.|++. . ++.++|+|||+..
T Consensus 1351 G~nLSgGQrQrL~LARALLr~----~~ILlLDEaTS~lD~~Te~~I~~~L~~~------------~-~~~TvI~IaHRl~ 1413 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSK----AKILLLDEPSAHLDPVTLQIIRKTLKQS------------F-SNCTVILSEHRVE 1413 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----CCEEEEeCCcccCCHHHHHHHHHHHHHH------------c-CCCEEEEEecCHH
Confidence 347999999999999999866 9999999999999999999999999988 2 6789999999999
Q ss_pred HHHhccceEEEeecCCC
Q 036401 1137 FYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1137 ~~~~~d~~~GV~~~~~~ 1153 (1154)
++..||++ +.|++|+
T Consensus 1414 ti~~~DrI--lvL~~G~ 1428 (1490)
T TIGR01271 1414 ALLECQQF--LVIEGSS 1428 (1490)
T ss_pred HHHhCCEE--EEEECCE
Confidence 99999999 5577775
No 436
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.83 E-value=5.8e-09 Score=128.36 Aligned_cols=77 Identities=25% Similarity=0.325 Sum_probs=68.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCC---CeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPS---PFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~---~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
+.+..|||||+++++||.+|+.. | +++|||||+++||+..+..+.++|..+. ..+..+|+|
T Consensus 826 ~~~~tLSgGEkQRl~LAraL~~~----p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~------------~~G~TVIii 889 (943)
T PRK00349 826 QPATTLSGGEAQRVKLAKELSKR----STGKTLYILDEPTTGLHFEDIRKLLEVLHRLV------------DKGNTVVVI 889 (943)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC----CCCCeEEEEECCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEE
Confidence 45679999999999999999866 5 8999999999999999999999999993 346679999
Q ss_pred EechhHHHhccceEEE
Q 036401 1132 SLKDSFYDKAEALVGV 1147 (1154)
Q Consensus 1132 t~~~~~~~~~d~~~GV 1147 (1154)
||+...+..||.++-+
T Consensus 890 tH~~~~i~~aD~ii~L 905 (943)
T PRK00349 890 EHNLDVIKTADWIIDL 905 (943)
T ss_pred ecCHHHHHhCCEEEEe
Confidence 9999888999988543
No 437
>PF13166 AAA_13: AAA domain
Probab=98.82 E-value=5.9e-06 Score=103.49 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=63.7
Q ss_pred cccccCchhhHHHHHHHHHHhhcc-----cCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHS-----YKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSI 1129 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~-----~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i 1129 (1154)
.....||-|||+.+|+|+-||.-. +...+++|+|.|=+.||..++..++.+|.++. ......|+|
T Consensus 496 ~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~----------~~~~~~Qvi 565 (712)
T PF13166_consen 496 KPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEI----------KNSKFRQVI 565 (712)
T ss_pred cccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHh----------hcCCcceEE
Confidence 345899999999999999998765 12568999999999999999999999999992 014689999
Q ss_pred EEEechhHHH
Q 036401 1130 VISLKDSFYD 1139 (1154)
Q Consensus 1130 ~it~~~~~~~ 1139 (1154)
|.||+..++.
T Consensus 566 IlTHn~~F~~ 575 (712)
T PF13166_consen 566 ILTHNLYFFK 575 (712)
T ss_pred EEeCcHHHHH
Confidence 9999988775
No 438
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=7.1e-09 Score=127.30 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=69.1
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||.+|+.. ..+|+++|||||+++||+.++..+.++|..+. ..+..+|+|||+
T Consensus 824 ~~~~tLSgGe~QRl~LA~aL~~~-~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~------------~~G~TVIvi~H~ 890 (924)
T TIGR00630 824 QPATTLSGGEAQRIKLAKELSKR-STGRTLYILDEPTTGLHFDDIKKLLEVLQRLV------------DQGNTVVVIEHN 890 (924)
T ss_pred CccccCCHHHHHHHHHHHHHhhc-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH------------hCCCEEEEEeCC
Confidence 45779999999999999999852 13479999999999999999999999999993 346789999999
Q ss_pred hhHHHhccceEEE
Q 036401 1135 DSFYDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV 1147 (1154)
..++..||.++-+
T Consensus 891 ~~~i~~aD~ii~L 903 (924)
T TIGR00630 891 LDVIKTADYIIDL 903 (924)
T ss_pred HHHHHhCCEEEEe
Confidence 9888999988543
No 439
>PLN03140 ABC transporter G family member; Provisional
Probab=98.80 E-value=5.8e-09 Score=135.87 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=67.0
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
++.||||||+|++||..|+.. |++++|||||+|||+.++..+.++|+++. ..+..+|++||++.
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~----P~lL~LDEPTsgLD~~~a~~v~~~L~~l~------------~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVAN----PSIIFMDEPTSGLDARAAAIVMRTVRNTV------------DTGRTVVCTIHQPS 1080 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHH------------HCCCEEEEEeCCCC
Confidence 468999999999999999998 99999999999999999999999999993 34667999999975
Q ss_pred --HHHhccceEEE
Q 036401 1137 --FYDKAEALVGV 1147 (1154)
Q Consensus 1137 --~~~~~d~~~GV 1147 (1154)
++..+|+++-+
T Consensus 1081 ~~i~~~~D~vllL 1093 (1470)
T PLN03140 1081 IDIFEAFDELLLM 1093 (1470)
T ss_pred HHHHHhCCEEEEE
Confidence 57899998543
No 440
>PLN03232 ABC transporter C family member; Provisional
Probab=98.77 E-value=1.1e-08 Score=135.60 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=65.8
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHH-HHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGF-IRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~-l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
...||||||||++||+++.-. ||+++||||+++||+.+...+.+- +..+ . ++.++|+|||+.
T Consensus 738 G~~LSGGQkQRIaLARAly~~----~~IlLLDEptSaLD~~t~~~I~~~~l~~~------------l-~~kT~IlvTH~~ 800 (1495)
T PLN03232 738 GVNISGGQKQRVSMARAVYSN----SDIYIFDDPLSALDAHVAHQVFDSCMKDE------------L-KGKTRVLVTNQL 800 (1495)
T ss_pred CcccCHHHHHHHHHHHHHhcC----CCEEEEcCCccccCHHHHHHHHHHHhhhh------------h-cCCEEEEEECCh
Confidence 347999999999999999876 999999999999999998877654 5544 2 567899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..||.+ |.+++|+
T Consensus 801 ~~l~~aD~I--i~L~~G~ 816 (1495)
T PLN03232 801 HFLPLMDRI--ILVSEGM 816 (1495)
T ss_pred hhHHhCCEE--EEEeCCE
Confidence 999999999 4556664
No 441
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=98.77 E-value=3.5e-09 Score=108.80 Aligned_cols=51 Identities=33% Similarity=0.572 Sum_probs=43.5
Q ss_pred CceeEEEEecceeccCceeecCCC-CeEEEEcCCCCCHHHHHHHHHHHhCccc
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFS-DFTAIIGPNGAGKSNLMDAISFVLGVRT 59 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~-~~~~IvG~NGsGKS~ildAi~~~lg~~~ 59 (1154)
|+|.+|.|.||+||.+.. |.|.. +.|.||||||||||+|||||+-||..-.
T Consensus 1 mrLrkiSl~nfr~f~~ld-itf~e~~ttIivgpNGsGKTtvLdair~aL~~fi 52 (440)
T COG3950 1 MRLRKISLNNFRCFLNLD-ITFGESETTIIVGPNGSGKTTVLDAIRNALNKFI 52 (440)
T ss_pred Cccchhhhhhhhhhhhce-eecCCCceEEEECCCCCChhhHHHHHHHHHHhhc
Confidence 578999999999999986 43333 4999999999999999999999996543
No 442
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.76 E-value=1.3e-08 Score=108.83 Aligned_cols=85 Identities=28% Similarity=0.325 Sum_probs=74.3
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.+.+..|||||-|++|||..|+-- +++|+||||.|+||...|-.+.+.|+.+. .......++|-|
T Consensus 450 e~~v~~LSGGELQRvaIaa~L~re----ADlYllDEPSA~LDvEqR~~vakvIRR~~-----------e~~~kta~vVdH 514 (591)
T COG1245 450 ERPVDELSGGELQRVAIAAALSRE----ADLYLLDEPSAYLDVEQRIIVAKVIRRFI-----------ENNEKTALVVDH 514 (591)
T ss_pred hcccccCCchhHHHHHHHHHhccc----cCEEEecCchhhccHHHHHHHHHHHHHHH-----------hhcCceEEEEec
Confidence 467889999999999999999877 99999999999999999999999999884 235677899999
Q ss_pred chhHHH-hccceEEEeecCCC
Q 036401 1134 KDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
+..+.. .+|+++-..=.||+
T Consensus 515 Di~~~dyvsDr~ivF~GePg~ 535 (591)
T COG1245 515 DIYMIDYVSDRLIVFEGEPGK 535 (591)
T ss_pred ceehhhhhhceEEEEecCCCc
Confidence 998887 79999866666664
No 443
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1e-08 Score=108.91 Aligned_cols=76 Identities=32% Similarity=0.432 Sum_probs=68.5
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhHH
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSFY 1138 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~ 1138 (1154)
-||||||||+|||+.+-=. ||+++|||.|++||...-..+..-|... + .+.+-++|-|+.+++
T Consensus 399 klSggekqrvaiar~ilk~----p~il~~deatsaldt~te~~iq~~l~~~------------~-~~rttlviahrlsti 461 (497)
T COG5265 399 KLSGGEKQRVAIARTILKN----PPILILDEATSALDTHTEQAIQAALREV------------S-AGRTTLVIAHRLSTI 461 (497)
T ss_pred eccCchHHHHHHHHHHhcC----CCEEEEehhhhHhhhhHHHHHHHHHHHH------------h-CCCeEEEEeehhhhc
Confidence 6999999999999999766 9999999999999999999999999998 3 678899999999999
Q ss_pred HhccceEEEeecCCC
Q 036401 1139 DKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1139 ~~~d~~~GV~~~~~~ 1153 (1154)
-.||.++ .+++|+
T Consensus 462 ~~adeii--vl~~g~ 474 (497)
T COG5265 462 IDADEII--VLDNGR 474 (497)
T ss_pred cCCceEE--EeeCCE
Confidence 9999994 456654
No 444
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.75 E-value=1.7e-08 Score=110.27 Aligned_cols=81 Identities=21% Similarity=0.220 Sum_probs=71.2
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
...+..||-||+|++.|--+|... |.|+||||||+-|-|.-...++..|+.+.++ +..+|+|||
T Consensus 135 ~~~V~dLsVG~qQRVEIlKaLyr~----a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~------------G~tIi~ITH 198 (501)
T COG3845 135 DAKVADLSVGEQQRVEILKALYRG----ARLLILDEPTAVLTPQEADELFEILRRLAAE------------GKTIIFITH 198 (501)
T ss_pred cceeecCCcchhHHHHHHHHHhcC----CCEEEEcCCcccCCHHHHHHHHHHHHHHHHC------------CCEEEEEec
Confidence 367889999999999999999888 9999999999999999999999999999644 455999999
Q ss_pred c-hhHHHhccceEEEeecCC
Q 036401 1134 K-DSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1134 ~-~~~~~~~d~~~GV~~~~~ 1152 (1154)
+ .+.+.+||++- -++.|
T Consensus 199 KL~Ev~~iaDrvT--VLR~G 216 (501)
T COG3845 199 KLKEVMAIADRVT--VLRRG 216 (501)
T ss_pred cHHHHHHhhCeeE--EEeCC
Confidence 9 78889999983 34444
No 445
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.74 E-value=1.3e-08 Score=113.88 Aligned_cols=81 Identities=23% Similarity=0.339 Sum_probs=72.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..+..||||-+|++.||..|+.. |+++||||||.|.|.-....+..+|.+++++ +.-+|+||..
T Consensus 397 ~~v~~LSGGNQQKVvlarwL~~~----p~vLilDEPTRGIDVGAK~eIy~li~~lA~~------------G~ail~iSSE 460 (500)
T COG1129 397 QPIGTLSGGNQQKVVLARWLATD----PKVLILDEPTRGIDVGAKAEIYRLIRELAAE------------GKAILMISSE 460 (500)
T ss_pred chhhcCCchhhhhHHHHHHHhcC----CCEEEECCCCcCcccchHHHHHHHHHHHHHC------------CCEEEEEeCC
Confidence 56889999999999999999888 9999999999999999999999999999544 4559999997
Q ss_pred -hhHHHhccceEEEeecCCC
Q 036401 1135 -DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 -~~~~~~~d~~~GV~~~~~~ 1153 (1154)
++++.+||+++ .|+.|+
T Consensus 461 lpEll~~~DRIl--Vm~~Gr 478 (500)
T COG1129 461 LPELLGLSDRIL--VMREGR 478 (500)
T ss_pred hHHHHhhCCEEE--EEECCE
Confidence 89999999994 577775
No 446
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.74 E-value=1.4e-08 Score=134.26 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=67.4
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHH-HHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGF-IRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~-l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
...||||||+|++||++++.. |++++||||+++||+.....+.+. +..+ . .+..+|+|||+.
T Consensus 546 g~~LSgGqkqRi~lARAl~~~----~~illLDep~saLD~~~~~~i~~~~l~~~------------~-~~~tvilvtH~~ 608 (1490)
T TIGR01271 546 GITLSGGQRARISLARAVYKD----ADLYLLDSPFTHLDVVTEKEIFESCLCKL------------M-SNKTRILVTSKL 608 (1490)
T ss_pred CCCcCHHHHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHHHHHHHH------------h-cCCeEEEEeCCh
Confidence 568999999999999999988 999999999999999999999984 6666 2 467899999999
Q ss_pred hHHHhccceEEEeecCC
Q 036401 1136 SFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~ 1152 (1154)
..+..||+++ .+++|
T Consensus 609 ~~~~~ad~ii--~l~~g 623 (1490)
T TIGR01271 609 EHLKKADKIL--LLHEG 623 (1490)
T ss_pred HHHHhCCEEE--EEECC
Confidence 9999999995 44455
No 447
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.74 E-value=1.5e-08 Score=130.31 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=68.8
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..|||||+++++||.+|+. ...+|+++|||||+++||+.++..+.++|..+. ..+..+|+|||+
T Consensus 805 q~~~tLSGGE~QRV~LAraL~~-~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~------------~~G~TVIiIsHd 871 (1809)
T PRK00635 805 RPLSSLSGGEIQRLKLAYELLA-PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLT------------HQGHTVVIIEHN 871 (1809)
T ss_pred CccccCCHHHHHHHHHHHHHhh-cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH------------hcCCEEEEEeCC
Confidence 4567899999999999999973 234599999999999999999999999999993 346679999999
Q ss_pred hhHHHhccceEEE
Q 036401 1135 DSFYDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV 1147 (1154)
...+..||+++-+
T Consensus 872 l~~i~~aDrVi~L 884 (1809)
T PRK00635 872 MHVVKVADYVLEL 884 (1809)
T ss_pred HHHHHhCCEEEEE
Confidence 8888999998533
No 448
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.7e-08 Score=95.45 Aligned_cols=72 Identities=26% Similarity=0.298 Sum_probs=63.0
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVIS 1132 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it 1132 (1154)
...+..+||-|++.++|||.+.+-+ +|+-|||||+++||..++..+..++... +..+.=+|+.|
T Consensus 124 ~dlp~~~LSAGQqRRvAlArL~ls~----~pLWiLDEP~taLDk~g~a~l~~l~~~H------------~~~GGiVlltt 187 (209)
T COG4133 124 EDLPVGQLSAGQQRRVALARLWLSP----APLWILDEPFTALDKEGVALLTALMAAH------------AAQGGIVLLTT 187 (209)
T ss_pred cccchhhcchhHHHHHHHHHHHcCC----CCceeecCcccccCHHHHHHHHHHHHHH------------hcCCCEEEEec
Confidence 3456789999999999999999887 9999999999999999999999999998 44566699999
Q ss_pred echhHHHh
Q 036401 1133 LKDSFYDK 1140 (1154)
Q Consensus 1133 ~~~~~~~~ 1140 (1154)
|++.-..-
T Consensus 188 Hq~l~~~~ 195 (209)
T COG4133 188 HQPLPIAS 195 (209)
T ss_pred CCccCCCc
Confidence 99766543
No 449
>PLN03130 ABC transporter C family member; Provisional
Probab=98.73 E-value=1.7e-08 Score=133.82 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=66.1
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHH-HHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAG-FIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~-~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
...||||||||++||+++.-. ||+++||||+++||+.+...+++ .+..+ . ++..+|+|||+.
T Consensus 738 G~~LSGGQKQRIaLARAly~~----~~IlLLDEptSALD~~~~~~I~~~~l~~~------------l-~~kTvIlVTH~l 800 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSN----SDVYIFDDPLSALDAHVGRQVFDKCIKDE------------L-RGKTRVLVTNQL 800 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCC----CCEEEECCCccccCHHHHHHHHHHHhhHH------------h-cCCEEEEEECCH
Confidence 347999999999999999877 99999999999999998887764 55554 2 467899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
..+..||.+ |.+++|+
T Consensus 801 ~~l~~aD~I--i~L~~G~ 816 (1622)
T PLN03130 801 HFLSQVDRI--ILVHEGM 816 (1622)
T ss_pred hHHHhCCEE--EEEeCCE
Confidence 999999999 4566664
No 450
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.73 E-value=1.9e-08 Score=100.80 Aligned_cols=82 Identities=20% Similarity=0.224 Sum_probs=70.6
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.+++.||-|||.++.||-.|-.. |.+++|||||.+||...+..+.++|++.. ...++++++.||.
T Consensus 152 ~~vr~LSlGqRmraeLaaaLLh~----p~VLfLDEpTvgLDV~aq~~ir~Flke~n-----------~~~~aTVllTTH~ 216 (325)
T COG4586 152 WPVRKLSLGQRMRAELAAALLHP----PKVLFLDEPTVGLDVNAQANIREFLKEYN-----------EERQATVLLTTHI 216 (325)
T ss_pred hhhhhccchHHHHHHHHHHhcCC----CcEEEecCCccCcchhHHHHHHHHHHHHH-----------HhhCceEEEEecc
Confidence 56889999999999999988765 99999999999999999999999999984 2357889999999
Q ss_pred -hhHHHhccceEEEeecCCC
Q 036401 1135 -DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 -~~~~~~~d~~~GV~~~~~~ 1153 (1154)
..+..+||+++- ++.|+
T Consensus 217 ~~di~~lc~rv~~--I~~Gq 234 (325)
T COG4586 217 FDDIATLCDRVLL--IDQGQ 234 (325)
T ss_pred hhhHHHhhhheEE--eeCCc
Confidence 567779999964 45554
No 451
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.72 E-value=1.7e-08 Score=134.14 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=68.8
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
....||||||+|++||+++... ||+++||||+++||+.+...+.+.+.... | ...+..+|+|||+.
T Consensus 757 ~g~~LSGGQkqRiaLARAl~~~----~~illLDEp~saLD~~~~~~i~~~l~~~~--~--------~~~~~tvIlvTH~~ 822 (1522)
T TIGR00957 757 KGVNLSGGQKQRVSLARAVYSN----ADIYLFDDPLSAVDAHVGKHIFEHVIGPE--G--------VLKNKTRILVTHGI 822 (1522)
T ss_pred CCCCCCHHHHHHHHHHHHHhcC----CCEEEEcCCccccCHHHHHHHHHHHhhhh--h--------hhcCCEEEEEeCCh
Confidence 3568999999999999999887 99999999999999999999999886430 0 01457899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
..+..||+++ .+++|+
T Consensus 823 ~~l~~~D~ii--~l~~G~ 838 (1522)
T TIGR00957 823 SYLPQVDVII--VMSGGK 838 (1522)
T ss_pred hhhhhCCEEE--EecCCe
Confidence 9999999994 456664
No 452
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.71 E-value=1.5e-08 Score=132.62 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=69.6
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
.++.||||||+|++||..|+.. |++++|||||+|||+.+...+.+.|++++. ..+..+|++||++
T Consensus 206 ~~~~LSGGerkRvsIA~aL~~~----p~vlllDEPTsgLD~~~~~~i~~~L~~la~-----------~~g~tvii~~Hq~ 270 (1394)
T TIGR00956 206 FVRGVSGGERKRVSIAEASLGG----AKIQCWDNATRGLDSATALEFIRALKTSAN-----------ILDTTPLVAIYQC 270 (1394)
T ss_pred cCCCCCcccchHHHHHHHHHhC----CCEEEEeCCCCCcCHHHHHHHHHHHHHHHH-----------hcCCEEEEEecCC
Confidence 4679999999999999999988 999999999999999999999999999931 1356799999994
Q ss_pred --hHHHhccceEEEeecCCC
Q 036401 1136 --SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 --~~~~~~d~~~GV~~~~~~ 1153 (1154)
.++..+|+++-+ .+|+
T Consensus 271 ~~~i~~l~D~v~~L--~~G~ 288 (1394)
T TIGR00956 271 SQDAYELFDKVIVL--YEGY 288 (1394)
T ss_pred CHHHHHhhceEEEE--eCCe
Confidence 577899999644 4554
No 453
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=98.69 E-value=3e-08 Score=92.73 Aligned_cols=67 Identities=45% Similarity=0.692 Sum_probs=61.2
Q ss_pred CCcceecccccccCchhHHHHHHHhhccCCCeEEecChhhHHHHHH----------------------------------
Q 036401 517 QGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDENTGKECIK---------------------------------- 562 (1154)
Q Consensus 517 ~gv~g~l~~l~~~~~~~~~~av~~~lG~~l~~iVvd~~~~a~~~i~---------------------------------- 562 (1154)
+||+|+|++++++ +++|+.||++++|.++++|||++.+++..|+.
T Consensus 2 ~gv~G~l~dli~v-~~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~~ 80 (120)
T PF06470_consen 2 PGVLGRLADLIEV-DPKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPPG 80 (120)
T ss_dssp TTEEEEGGGSEEE-SGGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHSTT
T ss_pred CCeeeeHHhceec-CHHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCCc
Confidence 6899999999999 78999999999999999999999999999887
Q ss_pred ------------------HHHHHhCCeEecCChHHHHhhh
Q 036401 563 ------------------AVLFAVGNTLVCDGLDEAKVLS 584 (1154)
Q Consensus 563 ------------------ai~~~lg~~lvve~~~~A~~i~ 584 (1154)
++.++||+++||+|+++|.+++
T Consensus 81 ~~~~l~d~i~~~d~~~~~~~~~llg~~~vv~~l~~A~~la 120 (120)
T PF06470_consen 81 GAGPLIDLIEFPDEEYRPALEFLLGDVVVVDDLEEARKLA 120 (120)
T ss_dssp SEEEGGGGEEESCGGGHHHHHHHHTTEEEESSHHHHHHHH
T ss_pred chHHHHHhcccCcHHHHHHHHHHcCCEEEECCHHHHHHhC
Confidence 7788888888888888887763
No 454
>PRK00064 recF recombination protein F; Reviewed
Probab=98.69 E-value=7.3e-07 Score=100.05 Aligned_cols=150 Identities=12% Similarity=0.130 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCC-C-------CCC------------
Q 036401 980 EKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENE-D-------DPF------------ 1039 (1154)
Q Consensus 980 ~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~------------ 1039 (1154)
.+.+...+..+-......-..++..++..+..+|..++... ..+.+.+... . +.+
T Consensus 173 l~~w~~~l~~~g~~I~~~R~~~~~~L~~~~~~~~~~l~~~~-----~~~~l~y~~~~~~~~~~~~~~~~~~l~~~~~~d~ 247 (361)
T PRK00064 173 LDVWDEQLAELGAAIAAARLEYLERLAPLAAKTHQEISPEF-----ELASLSYQSSVEDDAEKIEEDLLEALAKNRERDR 247 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CceEEEEeCCCCcchhHHHHHHHHHHHHhHHHHH
Confidence 44555666666666666667778888888888888873211 1222222111 0 000
Q ss_pred Ccccc--------eeecCCCCcccccccCchhhHHHHHHHHHHhhcc-----cCCCCeEEeeccccccchhhHHHHHHHH
Q 036401 1040 LHGIK--------YTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHS-----YKPSPFFILDEVDAALDNLNVAKVAGFI 1106 (1154)
Q Consensus 1040 ~~~~~--------~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~-----~~p~~~~~lDE~d~~lD~~~~~~~~~~l 1106 (1154)
..|.. +....++ ......+|+||+.+++||+.||... ..+||+++||||+++||+.++..+.++|
T Consensus 248 ~~g~T~~GpHrdDl~~~~~g--~~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l 325 (361)
T PRK00064 248 ARGRTLVGPHRDDLRFRING--LPAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERL 325 (361)
T ss_pred hcCCCCCCcchhceEEEECC--CCHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHH
Confidence 01111 1111112 2456789999999999999998532 4679999999999999999999999999
Q ss_pred HhcccCCCCCCCCCCCCCCeeEEEEEechhHHH-hc--cceEEEeecCCC
Q 036401 1107 RSKSCEGTRGNQDADEGNGFQSIVISLKDSFYD-KA--EALVGVYRDSDR 1153 (1154)
Q Consensus 1107 ~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~~~-~~--d~~~GV~~~~~~ 1153 (1154)
..+ +.|+|++||+...+. .+ +.++- +..|+
T Consensus 326 ~~~---------------~~qv~it~~~~~~~~~~~~~~~i~~--v~~G~ 358 (361)
T PRK00064 326 KGL---------------GAQVFITTTDLEDLADLLENAKIFH--VEQGK 358 (361)
T ss_pred hcc---------------CCEEEEEcCChhhhhhhhccCcEEE--EeCCE
Confidence 865 248999999854433 32 34543 45553
No 455
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.68 E-value=0.0029 Score=76.21 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=14.1
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 167 ISGSDELKREYEVLEDEKGKAEEKSALVYQKK 198 (1154)
Q Consensus 167 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (1154)
.+-+...+..+........++...+....+.+
T Consensus 52 ~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL 83 (775)
T PF10174_consen 52 AAELSRLKEQLRVTQEENQKAQEEIQALQEEL 83 (775)
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34445555555444444444444333333333
No 456
>PTZ00243 ABC transporter; Provisional
Probab=98.67 E-value=2.9e-08 Score=131.37 Aligned_cols=79 Identities=22% Similarity=0.209 Sum_probs=66.2
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHH-HhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFI-RSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l-~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
....||||||+|++||++|+.. |++++||||+++||+.....+++.+ ... . .+..+|+|||+
T Consensus 779 ~g~~LSGGQkqRvaLARAl~~~----p~illLDEP~saLD~~~~~~i~~~~~~~~------------~-~~~TvIlvTH~ 841 (1560)
T PTZ00243 779 KGVNLSGGQKARVSLARAVYAN----RDVYLLDDPLSALDAHVGERVVEECFLGA------------L-AGKTRVLATHQ 841 (1560)
T ss_pred CCCCCCHHHHHHHHHHHHHhcC----CCEEEEcCccccCCHHHHHHHHHHHHHHh------------h-CCCEEEEEeCC
Confidence 3668999999999999999988 9999999999999999988887643 323 1 36789999999
Q ss_pred hhHHHhccceEEEeecCCC
Q 036401 1135 DSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~~ 1153 (1154)
...+..||+++ .+++|+
T Consensus 842 ~~~~~~ad~ii--~l~~G~ 858 (1560)
T PTZ00243 842 VHVVPRADYVV--ALGDGR 858 (1560)
T ss_pred HHHHHhCCEEE--EEECCE
Confidence 99999999994 455654
No 457
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=98.67 E-value=1.5e-07 Score=103.00 Aligned_cols=61 Identities=38% Similarity=0.571 Sum_probs=50.4
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhh
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLI 71 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I 71 (1154)
|+|.+|+|.||+++.... + ++.++|++||+||+|||||++||+++||... ..|.=...||=
T Consensus 1 M~l~~i~i~~FRgi~~~~-~-~l~~~t~liG~N~~GKss~l~Al~~~l~~~~-~~~~f~~~DFh 61 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLS-L-PLDDNTVLIGENNWGKSSLLDALSLLLSPSR-RLYQFTESDFH 61 (373)
T ss_pred CeEEEEEEeccCccceEE-E-EecCceEEEcCCCccHhHHHHHHHHHhCCCc-cccccCHHHhC
Confidence 689999999999999865 5 3567999999999999999999999999863 24444556663
No 458
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.65 E-value=3.3e-08 Score=89.04 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=66.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
.++|.+||||+|.+++|-+++.-. |.|++||||++.||..-|..+.+.+-+-.+. -+.-.|.|||
T Consensus 129 ~~dP~tlSGGQrARvaL~R~Lla~----Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~-----------agiPtv~VTH 193 (213)
T COG4136 129 HQDPATLSGGQRARVALLRALLAQ----PKALLLDEPFSRLDVALRDQFRQWVFSEVRA-----------AGIPTVQVTH 193 (213)
T ss_pred hcChhhcCcchHHHHHHHHHHHhC----cceeeeCCchhHHHHHHHHHHHHHHHHHHHh-----------cCCCeEEEec
Confidence 478999999999999999999888 9999999999999999999999877655321 3455899999
Q ss_pred chhHHHhccceEEEee
Q 036401 1134 KDSFYDKAEALVGVYR 1149 (1154)
Q Consensus 1134 ~~~~~~~~d~~~GV~~ 1149 (1154)
+..-+....+++-+-|
T Consensus 194 D~~DvpagsrVie~~~ 209 (213)
T COG4136 194 DLQDVPAGSRVIEMAQ 209 (213)
T ss_pred ccccCCCCCeeeeeeh
Confidence 9777766667655443
No 459
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.65 E-value=3e-08 Score=130.01 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=63.5
Q ss_pred cCchhhHHHHHHHHHHhhcccCCCC-eEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhH
Q 036401 1059 QLSGGEKTVAALALLFSIHSYKPSP-FFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSF 1137 (1154)
Q Consensus 1059 ~lSgGek~~~~la~~~a~~~~~p~~-~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~ 1137 (1154)
.||||||+|++||+.|+.. |+ +++|||||++||+.+...+.++|++++ ..+..+|++||++..
T Consensus 901 ~LSgGqrqRl~Ia~aL~~~----P~~iLlLDEPTsgLD~~~~~~i~~~L~~la------------~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 901 GLNVEQRKRLTIGVELVAK----PKLLLFLDEPTSGLDSQTAWSICKLMRKLA------------DHGQAILCTIHQPSA 964 (1394)
T ss_pred CCCHHHhhHHHHHHHHHcC----CCeEEEEcCCCCCCCHHHHHHHHHHHHHHH------------HcCCEEEEEecCCCH
Confidence 7999999999999999987 85 999999999999999999999999993 346679999999764
Q ss_pred --HHhccceE
Q 036401 1138 --YDKAEALV 1145 (1154)
Q Consensus 1138 --~~~~d~~~ 1145 (1154)
+..+|+++
T Consensus 965 ~~~~~~D~vl 974 (1394)
T TIGR00956 965 ILFEEFDRLL 974 (1394)
T ss_pred HHHHhcCEEE
Confidence 57899985
No 460
>COG1106 Predicted ATPases [General function prediction only]
Probab=98.64 E-value=1.9e-08 Score=108.98 Aligned_cols=51 Identities=39% Similarity=0.733 Sum_probs=44.3
Q ss_pred ceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccc
Q 036401 9 KIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTG 60 (1154)
Q Consensus 9 ~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~ 60 (1154)
+|.++.|.|||||.+....+ +.+|++|+|+|||||||+++||.|..|--..
T Consensus 1 MI~~~~IkNFkSf~e~~~~~-~~~in~I~G~N~sGKSNlleAl~f~~~~~~~ 51 (371)
T COG1106 1 MIKSFKIKNFKSFRELELED-FGKINIIYGANGAGKSNLLEALYFLKGLISP 51 (371)
T ss_pred CceEEEecccccHHHhhhcc-ccceEEEEcCCCCchhHHHHHHHHHHHhccC
Confidence 48899999999999986444 5789999999999999999999999876443
No 461
>PLN03140 ABC transporter G family member; Provisional
Probab=98.62 E-value=2.1e-08 Score=130.70 Aligned_cols=82 Identities=12% Similarity=0.219 Sum_probs=70.2
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..++.||||||+|++||.+++.. |++++|||||+|||+.++..+.+.|+++. +. .+..+|++||+
T Consensus 332 ~~~rglSGGerkRVsia~aL~~~----p~vlllDEPTsGLDs~t~~~i~~~Lr~la----------~~-~g~Tviis~Hq 396 (1470)
T PLN03140 332 EMIRGISGGQKKRVTTGEMIVGP----TKTLFMDEISTGLDSSTTYQIVKCLQQIV----------HL-TEATVLMSLLQ 396 (1470)
T ss_pred ccccCCCcccceeeeehhhhcCC----CcEEEEeCCCcCccHHHHHHHHHHHHHHH----------Hh-cCCEEEEEecC
Confidence 35779999999999999999887 99999999999999999999999999993 11 36679999998
Q ss_pred h--hHHHhccceEEEeecCCC
Q 036401 1135 D--SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~--~~~~~~d~~~GV~~~~~~ 1153 (1154)
+ .++..+|+++ .+.+|+
T Consensus 397 p~~~i~~lfD~vi--lL~~G~ 415 (1470)
T PLN03140 397 PAPETFDLFDDII--LLSEGQ 415 (1470)
T ss_pred CCHHHHHHhheEE--EeeCce
Confidence 4 7888999995 445554
No 462
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.61 E-value=0.00012 Score=76.79 Aligned_cols=70 Identities=14% Similarity=0.317 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 036401 285 EIAQCEKKIAERNNRLDKSQPELLKLNEEMSRINSKIKSSKKELERKREERRKHANDIKELQKGIQDLTG 354 (1154)
Q Consensus 285 ~l~~~~~~i~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 354 (1154)
.+..+...+..+...+......+.....++.............+..+..........+..++.++..+..
T Consensus 37 e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~ 106 (237)
T PF00261_consen 37 EVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKR 106 (237)
T ss_dssp HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344433333333333444444444443333333333333333333333444443333333
No 463
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.61 E-value=6.4e-08 Score=90.33 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=78.1
Q ss_pred eecCCCCcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCC
Q 036401 1046 TAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNG 1125 (1154)
Q Consensus 1046 ~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 1125 (1154)
.+..|+...-+++.||-|+||+||||++|.+. |.++|.||.-++||..-+..+..++.++... -+
T Consensus 136 VGL~Pdhan~~~~~la~~QKQRVaLARALIL~----P~iIIaDeAl~~LD~smrsQl~NL~LeLQek-----------~G 200 (267)
T COG4167 136 VGLLPDHANYYPHMLAPGQKQRVALARALILR----PKIIIADEALASLDMSMRSQLINLMLELQEK-----------QG 200 (267)
T ss_pred hccCccccccchhhcCchhHHHHHHHHHHhcC----CcEEEehhhhhhccHHHHHHHHHHHHHHHHH-----------hC
Confidence 34455666678999999999999999999999 9999999999999999999999999998422 35
Q ss_pred eeEEEEEechhHHH-hccceEEEeecCCC
Q 036401 1126 FQSIVISLKDSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1126 ~q~i~it~~~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
.-||+||.+..++. .+|.+ +.|+.|+
T Consensus 201 iSyiYV~QhlG~iKHi~D~v--iVM~EG~ 227 (267)
T COG4167 201 ISYIYVTQHIGMIKHISDQV--LVMHEGE 227 (267)
T ss_pred ceEEEEechhhHhhhhcccE--EEEecCc
Confidence 55999999999998 78988 5577775
No 464
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=4.8e-08 Score=106.57 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=64.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+++.+||||=|.+++||+++-.. |++++|||||..||..|+.-+-.||..+ ..++|+|||+
T Consensus 194 ~pt~slSGGWrMrlaLARAlf~~----pDlLLLDEPTNhLDv~av~WLe~yL~t~---------------~~T~liVSHD 254 (582)
T KOG0062|consen 194 QPTKSLSGGWRMRLALARALFAK----PDLLLLDEPTNHLDVVAVAWLENYLQTW---------------KITSLIVSHD 254 (582)
T ss_pred ccccccCcchhhHHHHHHHHhcC----CCEEeecCCcccchhHHHHHHHHHHhhC---------------CceEEEEecc
Confidence 56889999999999999999888 9999999999999999999999999988 2679999999
Q ss_pred hhHHH-hccce
Q 036401 1135 DSFYD-KAEAL 1144 (1154)
Q Consensus 1135 ~~~~~-~~d~~ 1144 (1154)
..+.. .|..+
T Consensus 255 r~FLn~V~tdI 265 (582)
T KOG0062|consen 255 RNFLNTVCTDI 265 (582)
T ss_pred HHHHHHHHHHH
Confidence 99886 56544
No 465
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.59 E-value=5.3e-08 Score=104.65 Aligned_cols=73 Identities=25% Similarity=0.270 Sum_probs=66.2
Q ss_pred ccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhH
Q 036401 1058 EQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSF 1137 (1154)
Q Consensus 1058 ~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~ 1137 (1154)
--||||||||||||+.+-=. |.|++|||.|++||-.+-+.+-.-|..+ + .+.+-|+|-|+.++
T Consensus 673 LkLSGGEKQRVAiARtiLK~----P~iIlLDEATSALDT~tER~IQaaL~rl------------c-a~RTtIVvAHRLST 735 (790)
T KOG0056|consen 673 LKLSGGEKQRVAIARTILKA----PSIILLDEATSALDTNTERAIQAALARL------------C-ANRTTIVVAHRLST 735 (790)
T ss_pred cccCCcchhhHHHHHHHhcC----CcEEEEcchhhhcCCccHHHHHHHHHHH------------h-cCCceEEEeeeehh
Confidence 36999999999999998655 9999999999999999999999999999 4 67789999999999
Q ss_pred HHhccceEEE
Q 036401 1138 YDKAEALVGV 1147 (1154)
Q Consensus 1138 ~~~~d~~~GV 1147 (1154)
+-.||-+.-+
T Consensus 736 ivnAD~ILvi 745 (790)
T KOG0056|consen 736 IVNADLILVI 745 (790)
T ss_pred eecccEEEEE
Confidence 9999998644
No 466
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.55 E-value=0.00015 Score=75.98 Aligned_cols=51 Identities=18% Similarity=0.351 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhhchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 286 IAQCEKKIAERNNRLDKSQPELLKLNEEMSRINSKIKSSKKELERKREERR 336 (1154)
Q Consensus 286 l~~~~~~i~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~l~~~~~ 336 (1154)
...++..+..+...+..+...+.....++.....++..+....+.......
T Consensus 31 ~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k 81 (237)
T PF00261_consen 31 AEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333343333333333333333333333333333333333333333
No 467
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=2.2e-06 Score=95.91 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCC----CC------------CCCccc
Q 036401 980 EKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENE----DD------------PFLHGI 1043 (1154)
Q Consensus 980 ~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------------~~~~~~ 1043 (1154)
+..+...+..+-......-..++..++..+..+|..++... ....+.+... .+ +...|.
T Consensus 179 l~~w~~~L~~~g~~i~~~R~~~~~~l~~~~~~~~~~l~~~~-----~~~~l~y~~~~~~~~~~~~~~L~~~~~~d~~~g~ 253 (365)
T TIGR00611 179 LEVWDSQLAELGAKVSAWRAEFIEKLEPEAQKAHQLLLPEL-----ESLSLFYRGELWDKETDYAEALARNFERDLERGY 253 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cceEEEEeCchHHHHHHHHHHHHHhHHHHHHcCC
Confidence 44455566666666666666777888888888888873211 1223332211 00 011111
Q ss_pred ceeecCCCC-------cccc-cccCchhhHHHHHHHHHHhhc-----ccCCCCeEEeeccccccchhhHHHHHHHHHhcc
Q 036401 1044 KYTAMPPTK-------RFRD-MEQLSGGEKTVAALALLFSIH-----SYKPSPFFILDEVDAALDNLNVAKVAGFIRSKS 1110 (1154)
Q Consensus 1044 ~~~~~~~~~-------~~~~-~~~lSgGek~~~~la~~~a~~-----~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~ 1110 (1154)
+-.-|.+ ..++ -..+|+||+..++||+.||.. ....||+++||||+++||+..+..+.++|...
T Consensus 254 --T~~GPHRdDl~~~~~g~~~~~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~- 330 (365)
T TIGR00611 254 --TLVGPHRDDLRFRLNGLPVEDFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL- 330 (365)
T ss_pred --CCCCcchhceEEEECCEEHHHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc-
Confidence 1111111 0123 347899999999999999982 22349999999999999999999999999754
Q ss_pred cCCCCCCCCCCCCCCeeEEEEEechhHH
Q 036401 1111 CEGTRGNQDADEGNGFQSIVISLKDSFY 1138 (1154)
Q Consensus 1111 ~~~~~~~~~a~~~~~~q~i~it~~~~~~ 1138 (1154)
+.|+|++||+...+
T Consensus 331 --------------~~qv~it~~~~~~~ 344 (365)
T TIGR00611 331 --------------GVQVFVTAISLDHL 344 (365)
T ss_pred --------------CCEEEEEecChhhc
Confidence 45999999986544
No 468
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.51 E-value=1.9e-08 Score=124.48 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 658 GKISGLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKIDRRTTDINKLERRINEI 726 (1154)
Q Consensus 658 ~~i~~l~~~l~~l~~el~~l~~~l~~l~~el~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~i~~l 726 (1154)
.++..+..++.........+..........+..+..++..-+.....+...-..++..++.+..++.++
T Consensus 665 ~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~ 733 (859)
T PF01576_consen 665 AEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEA 733 (859)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333444444444444443
No 469
>PRK01156 chromosome segregation protein; Provisional
Probab=98.51 E-value=0.014 Score=75.24 Aligned_cols=90 Identities=27% Similarity=0.316 Sum_probs=76.1
Q ss_pred ccccccCchhhHHHHHHHHHHhh--cccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCC-CeeEEE
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSI--HSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGN-GFQSIV 1130 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~--~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~-~~q~i~ 1130 (1154)
..++..||||++++++||+.||+ .-+.||||++|||||++||+.++..+.++|..... ... .+|+||
T Consensus 796 ~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~----------~~~~~~~ii~ 865 (895)
T PRK01156 796 VEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLK----------DSSDIPQVIM 865 (895)
T ss_pred cCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHH----------hcCCCCeEEE
Confidence 46788999999999999976666 34578999999999999999999999999886421 112 369999
Q ss_pred EEechhHHHhccceEEEeecCCC
Q 036401 1131 ISLKDSFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1131 it~~~~~~~~~d~~~GV~~~~~~ 1153 (1154)
|||+..+...||++|.|++.+|.
T Consensus 866 ish~~~~~~~~d~ii~~~~~~~~ 888 (895)
T PRK01156 866 ISHHRELLSVADVAYEVKKSSGS 888 (895)
T ss_pred EECchHHHHhcCeEEEEEecCCe
Confidence 99999999999999999999884
No 470
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=1e-06 Score=95.15 Aligned_cols=82 Identities=23% Similarity=0.166 Sum_probs=61.7
Q ss_pred ccccCchhhHHHHHHHHHHhhc-----ccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEE
Q 036401 1056 DMEQLSGGEKTVAALALLFSIH-----SYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIV 1130 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~-----~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~ 1130 (1154)
....||+||+++++||+.||.- .+..||+++||||+++||+..+..+.++|..+ . |+|+
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~------------~----q~ii 243 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR------------V----QTFV 243 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC------------C----CEEE
Confidence 3668999999999999998732 23568999999999999999999999999877 2 5777
Q ss_pred EEec-hhHHHhc-cceEEEeecCCC
Q 036401 1131 ISLK-DSFYDKA-EALVGVYRDSDR 1153 (1154)
Q Consensus 1131 it~~-~~~~~~~-d~~~GV~~~~~~ 1153 (1154)
+||+ +.+...| +.-..+.++.|+
T Consensus 244 ~~~~~~~~~~~~~~~~~i~~l~~g~ 268 (270)
T cd03242 244 TTTDLADFDALWLRRAQIFRVDAGT 268 (270)
T ss_pred EeCCchhccchhccCccEEEEeCcE
Confidence 7766 4444555 222235556664
No 471
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.45 E-value=3.5e-07 Score=91.35 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=72.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
.+++.+|-|++.|+++|.+.+.. |+++|+||+.+.-|+....+-.+.+.++. .++..+|+|||+
T Consensus 143 ~PvktYSSGM~aRLaFsia~~~~----pdILllDEvlavGD~~F~~K~~~rl~e~~------------~~~~tiv~VSHd 206 (249)
T COG1134 143 QPVKTYSSGMYARLAFSVATHVE----PDILLLDEVLAVGDAAFQEKCLERLNELV------------EKNKTIVLVSHD 206 (249)
T ss_pred CchhhccHHHHHHHHHhhhhhcC----CCEEEEehhhhcCCHHHHHHHHHHHHHHH------------HcCCEEEEEECC
Confidence 45779999999999999999999 99999999999999999999999999993 356789999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
..++. +||++ ++++.|+
T Consensus 207 ~~~I~~~Cd~~--i~l~~G~ 224 (249)
T COG1134 207 LGAIKQYCDRA--IWLEHGQ 224 (249)
T ss_pred HHHHHHhcCee--EEEeCCE
Confidence 88885 99998 6677664
No 472
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.43 E-value=1.6e-07 Score=103.32 Aligned_cols=73 Identities=23% Similarity=0.205 Sum_probs=62.7
Q ss_pred ccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEe
Q 036401 1054 FRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISL 1133 (1154)
Q Consensus 1054 ~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~ 1133 (1154)
..++++||+|+|.||.+|+++.- +|.+++|||||.+||......+.++|.++ ..-+|+|||
T Consensus 504 ~~p~~~LS~Gqr~rVlFa~l~~k----qP~lLlLDEPtnhLDi~tid~laeaiNe~---------------~Ggvv~vSH 564 (614)
T KOG0927|consen 504 VVPMSQLSDGQRRRVLFARLAVK----QPHLLLLDEPTNHLDIETIDALAEAINEF---------------PGGVVLVSH 564 (614)
T ss_pred ccchhhcccccchhHHHHHHHhc----CCcEEEecCCCcCCCchhHHHHHHHHhcc---------------CCceeeeec
Confidence 35688999999999999887754 49999999999999999999999999998 234999999
Q ss_pred chhHHH-hccceE
Q 036401 1134 KDSFYD-KAEALV 1145 (1154)
Q Consensus 1134 ~~~~~~-~~d~~~ 1145 (1154)
+-.++. +|+.++
T Consensus 565 DfrlI~qVaeEi~ 577 (614)
T KOG0927|consen 565 DFRLISQVAEEIW 577 (614)
T ss_pred hhhHHHHHHHHhH
Confidence 977775 677665
No 473
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=2.8e-07 Score=97.64 Aligned_cols=69 Identities=28% Similarity=0.301 Sum_probs=59.3
Q ss_pred ccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1056 DMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1056 ~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
.+..||||+|++|+||=+..-- |+++||||||.+||-.....+.+.|.++ +.-+|||||+.
T Consensus 701 kikdLSGGQKaRValaeLal~~----PDvlILDEPTNNLDIESIDALaEAIney---------------~GgVi~VsHDe 761 (807)
T KOG0066|consen 701 KIKDLSGGQKARVALAELALGG----PDVLILDEPTNNLDIESIDALAEAINEY---------------NGGVIMVSHDE 761 (807)
T ss_pred eeeecCCcchHHHHHHHHhcCC----CCEEEecCCCCCcchhhHHHHHHHHHhc---------------cCcEEEEeccc
Confidence 4678999999999999876555 9999999999999999999999999998 23399999998
Q ss_pred hHHHhccc
Q 036401 1136 SFYDKAEA 1143 (1154)
Q Consensus 1136 ~~~~~~d~ 1143 (1154)
.++...|.
T Consensus 762 RLi~eT~C 769 (807)
T KOG0066|consen 762 RLIVETDC 769 (807)
T ss_pred ceeeecCc
Confidence 87764443
No 474
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.42 E-value=2e-07 Score=116.95 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=70.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
..++.+|||.|.++++|.++... |++++||||++||||..++.+++++..+.++|. -+|++||.
T Consensus 694 ~~~~~ySgG~kRkLs~aialig~----p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~------------aiiLTSHs 757 (885)
T KOG0059|consen 694 KQVRTYSGGNKRRLSFAIALIGD----PSVILLDEPSTGLDPKARRHLWDIIARLRKNGK------------AIILTSHS 757 (885)
T ss_pred cchhhCCCcchhhHHHHHHHhcC----CCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC------------EEEEEcCC
Confidence 45889999999999999999999 999999999999999999999999999953332 59999999
Q ss_pred hhHHH-hccceEEEeecCCC
Q 036401 1135 DSFYD-KAEALVGVYRDSDR 1153 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~~ 1153 (1154)
.+-.+ .||++ .-|.+|+
T Consensus 758 MeE~EaLCtR~--aImv~G~ 775 (885)
T KOG0059|consen 758 MEEAEALCTRT--AIMVIGQ 775 (885)
T ss_pred HHHHHHHhhhh--heeecCe
Confidence 77766 89998 4566665
No 475
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.42 E-value=2.7e-07 Score=110.29 Aligned_cols=72 Identities=22% Similarity=0.397 Sum_probs=65.0
Q ss_pred ccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEech--
Q 036401 1058 EQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKD-- 1135 (1154)
Q Consensus 1058 ~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~-- 1135 (1154)
+.+|||||.|++||.=+... ||+++|||||+|||..+...+..+|++++ ..+..+|++=|++
T Consensus 169 rgiSGGErkRvsia~Ell~~----P~iLflDEPTSGLDS~sA~~vv~~Lk~lA------------~~grtVi~tIHQPss 232 (613)
T KOG0061|consen 169 RGLSGGERKRVSIALELLTD----PSILFLDEPTSGLDSFSALQVVQLLKRLA------------RSGRTVICTIHQPSS 232 (613)
T ss_pred CccccchhhHHHHHHHHHcC----CCEEEecCCCCCcchhhHHHHHHHHHHHH------------hCCCEEEEEEeCCcH
Confidence 68999999999999999998 99999999999999999999999999993 3477899999995
Q ss_pred hHHHhccceE
Q 036401 1136 SFYDKAEALV 1145 (1154)
Q Consensus 1136 ~~~~~~d~~~ 1145 (1154)
+++..-|.++
T Consensus 233 ~lf~lFD~l~ 242 (613)
T KOG0061|consen 233 ELFELFDKLL 242 (613)
T ss_pred HHHHHHhHhh
Confidence 6777778874
No 476
>PF13166 AAA_13: AAA domain
Probab=98.42 E-value=0.0059 Score=76.70 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=32.6
Q ss_pred cceeccCc-eeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCc
Q 036401 17 NFKSYKGL-QIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGV 57 (1154)
Q Consensus 17 nFks~~~~-~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~ 57 (1154)
||+||.+. ..+.++.++|+|-|+|||||||+...|.-+-++
T Consensus 1 n~~~~~~~~~~~~~~~~~n~IYG~NGsGKStlsr~l~~~~~~ 42 (712)
T PF13166_consen 1 NYASFDNWDNELDEFKKINLIYGRNGSGKSTLSRILKSLCRG 42 (712)
T ss_pred CeeeecCCCccCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 78999623 345567889999999999999999998776543
No 477
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.40 E-value=4e-07 Score=100.16 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=69.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+.+..||||.+.|++||.+|-.. |.+++|||||.+||...+.-+-++|..+ . ...+++|+|-
T Consensus 217 k~~~~~SgGwrmR~aLAr~Lf~k----P~LLLLDEPtnhLDleA~~wLee~L~k~------------d--~~~lVi~sh~ 278 (614)
T KOG0927|consen 217 KKVKDLSGGWRMRAALARALFQK----PDLLLLDEPTNHLDLEAIVWLEEYLAKY------------D--RIILVIVSHS 278 (614)
T ss_pred HHhhccCchHHHHHHHHHHHhcC----CCEEEecCCccCCCHHHHHHHHHHHHhc------------c--CceEEEEecc
Confidence 56789999999999999999988 9999999999999999999999999988 2 2367888887
Q ss_pred hhHHH-hccceEEEeecCC
Q 036401 1135 DSFYD-KAEALVGVYRDSD 1152 (1154)
Q Consensus 1135 ~~~~~-~~d~~~GV~~~~~ 1152 (1154)
..++. +|..++-+++..+
T Consensus 279 QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 279 QDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred hhhhhhHhhhhheecccce
Confidence 77774 9999988776653
No 478
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.39 E-value=5.8e-08 Score=120.17 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhc
Q 036401 935 FKQKMDALISEIEKT 949 (1154)
Q Consensus 935 ~~~~l~~l~~~i~~l 949 (1154)
+..+|..+...++..
T Consensus 663 le~~i~~l~~eleE~ 677 (859)
T PF01576_consen 663 LEAEIQQLEEELEEE 677 (859)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555443
No 479
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.38 E-value=4.7e-07 Score=113.53 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=66.4
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHH-hcccCCCCCCCCCCCCCCeeEEEEEech
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIR-SKSCEGTRGNQDADEGNGFQSIVISLKD 1135 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~-~~~~~~~~~~~~a~~~~~~q~i~it~~~ 1135 (1154)
.-+||||||+|++||+++=-. +++|+||.|.+|+|...-+.+++-.. .+ -.+++.|+|||+.
T Consensus 641 GinLSGGQKqRIsLARAVY~~----adIYLLDDplSAVDahvg~~if~~ci~~~-------------L~~KT~ILVTHql 703 (1381)
T KOG0054|consen 641 GINLSGGQKQRISLARAVYQD----ADIYLLDDPLSAVDAHVGKHIFEECIRGL-------------LRGKTVILVTHQL 703 (1381)
T ss_pred ccCCcHhHHHHHHHHHHHhcc----CCEEEEcCcchhhhHhhhHHHHHHHHHhh-------------hcCCEEEEEeCch
Confidence 448999999999999998555 99999999999999998877776444 33 2578899999999
Q ss_pred hHHHhccceEEEeecCCC
Q 036401 1136 SFYDKAEALVGVYRDSDR 1153 (1154)
Q Consensus 1136 ~~~~~~d~~~GV~~~~~~ 1153 (1154)
.+...||.+ |-|.+|+
T Consensus 704 ~~L~~ad~I--ivl~~G~ 719 (1381)
T KOG0054|consen 704 QFLPHADQI--IVLKDGK 719 (1381)
T ss_pred hhhhhCCEE--EEecCCe
Confidence 999999999 6677775
No 480
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.38 E-value=0.016 Score=70.12 Aligned_cols=63 Identities=16% Similarity=0.313 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 036401 658 GKISGLEKKIQYAEIEKRSIEDKLANLRQEKRTIKEEIGRIKPDLQKLKDKIDRRTTDINKLE 720 (1154)
Q Consensus 658 ~~i~~l~~~l~~l~~el~~l~~~l~~l~~el~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~ 720 (1154)
.++..+...+..++.++......+..++.+...+-.........+..+.-.+.....++..+.
T Consensus 472 ~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~ 534 (775)
T PF10174_consen 472 KELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLE 534 (775)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHH
Confidence 344444444444444444444444444444333333333333333333333333333333333
No 481
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.38 E-value=2.9e-07 Score=79.73 Aligned_cols=55 Identities=31% Similarity=0.445 Sum_probs=45.1
Q ss_pred ccccccCchhhH-HHHHHHHHHhhccc--------CCCCeEEeeccccccchhhHHHHHHHHHh
Q 036401 1054 FRDMEQLSGGEK-TVAALALLFSIHSY--------KPSPFFILDEVDAALDNLNVAKVAGFIRS 1108 (1154)
Q Consensus 1054 ~~~~~~lSgGek-~~~~la~~~a~~~~--------~p~~~~~lDE~d~~lD~~~~~~~~~~l~~ 1108 (1154)
.+....+||||| ..+++|+++|+..+ ..+.+++||||++.||+.++..++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 467899999999 78888888777422 23589999999999999999999999864
No 482
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.37 E-value=3.3e-07 Score=94.20 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=64.1
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHH-HHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVA-GFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~-~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
....++.+|+|+++++.++..+ .+|++++||||+++||+..+..++ .++..+. ..+..+|++
T Consensus 85 l~~~~s~fs~g~~~~~~i~~~~-----~~p~llllDEp~~glD~~~~~~i~~~~l~~l~------------~~~~~vi~~ 147 (200)
T cd03280 85 IEQSLSTFSSHMKNIARILQHA-----DPDSLVLLDELGSGTDPVEGAALAIAILEELL------------ERGALVIAT 147 (200)
T ss_pred hhcCcchHHHHHHHHHHHHHhC-----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH------------hcCCEEEEE
Confidence 4466789999999999887653 368999999999999999999886 4677772 246679999
Q ss_pred EechhHHHhccceEEE
Q 036401 1132 SLKDSFYDKAEALVGV 1147 (1154)
Q Consensus 1132 t~~~~~~~~~d~~~GV 1147 (1154)
||...+...||+++.+
T Consensus 148 tH~~~l~~~~d~~~~l 163 (200)
T cd03280 148 THYGELKAYAYKREGV 163 (200)
T ss_pred CCHHHHHHHHhcCCCe
Confidence 9998888899988654
No 483
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.36 E-value=0.0053 Score=63.75 Aligned_cols=78 Identities=14% Similarity=0.317 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 408 DLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELRSMQDKHRDSRQKYENLKSKIGEI 485 (1154)
Q Consensus 408 ~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~l~~l 485 (1154)
+......+..++..+.++...+..++..+-....++......+...+......+..+..++..+.+.+..+...+..+
T Consensus 170 lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l 247 (294)
T COG1340 170 LKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333334444444444444444444444444444444444433333
No 484
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=4.3e-07 Score=86.48 Aligned_cols=49 Identities=43% Similarity=0.707 Sum_probs=38.6
Q ss_pred EEEecc-eeccCceeec------CCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc
Q 036401 13 LELENF-KSYKGLQIIG------PFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ 61 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i~------~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~ 61 (1154)
|++.|. |+|.+..+++ |..++|+|+||||+||||+|..++-.+...++.
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~ 57 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE 57 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCce
Confidence 456775 7887766552 445699999999999999999999988776653
No 485
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.35 E-value=7.5e-07 Score=102.21 Aligned_cols=73 Identities=21% Similarity=0.317 Sum_probs=65.5
Q ss_pred ccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechhH
Q 036401 1058 EQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDSF 1137 (1154)
Q Consensus 1058 ~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~~ 1137 (1154)
..|||||||++|+|+++-.. |.++||||-|++||+..-..+.++|++. . ++..||-|+|++..
T Consensus 514 ~vLS~GEqQRlafARilL~k----P~~v~LDEATsALDe~~e~~l~q~l~~~------------l-p~~tvISV~Hr~tl 576 (604)
T COG4178 514 RVLSGGEQQRLAFARLLLHK----PKWVFLDEATSALDEETEDRLYQLLKEE------------L-PDATVISVGHRPTL 576 (604)
T ss_pred hhcChhHHHHHHHHHHHHcC----CCEEEEecchhccChHHHHHHHHHHHhh------------C-CCCEEEEeccchhh
Confidence 37999999999999999998 9999999999999999999999999986 3 88999999999888
Q ss_pred HHhccceEEE
Q 036401 1138 YDKAEALVGV 1147 (1154)
Q Consensus 1138 ~~~~d~~~GV 1147 (1154)
-...+...-+
T Consensus 577 ~~~h~~~l~l 586 (604)
T COG4178 577 WNFHSRQLEL 586 (604)
T ss_pred HHHHhhheee
Confidence 8766665444
No 486
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.32 E-value=6.5e-07 Score=92.30 Aligned_cols=49 Identities=41% Similarity=0.731 Sum_probs=36.8
Q ss_pred EEEecc-eeccCceee------cCCCCeEEEEcCCCCCHHHHHHHHHHHhCccccc
Q 036401 13 LELENF-KSYKGLQII------GPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQ 61 (1154)
Q Consensus 13 l~l~nF-ks~~~~~~i------~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~ 61 (1154)
|+++|. -+|.+..++ -|...||+|+|||||||||+|.||.-.|-..++.
T Consensus 3 L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~ 58 (258)
T COG1120 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58 (258)
T ss_pred eEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCE
Confidence 556664 467666544 1233599999999999999999999988776654
No 487
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.31 E-value=7.5e-07 Score=102.86 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=73.4
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
++...|||||-||+=||.=|+-. ....-+|||||||.||=..-+..+.+.|..| ...+..+|+|-|+
T Consensus 818 QpatTLSGGEaQRvKLA~EL~k~-~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rL------------vd~GnTViVIEHN 884 (935)
T COG0178 818 QPATTLSGGEAQRVKLAKELSKR-STGKTLYILDEPTTGLHFDDIKKLLEVLHRL------------VDKGNTVIVIEHN 884 (935)
T ss_pred CccccccchHHHHHHHHHHHhhc-cCCCeEEEeCCCCCCCCHHHHHHHHHHHHHH------------HhCCCEEEEEecc
Confidence 56779999999999999988754 3444899999999999999999999999999 4577889999999
Q ss_pred hhHHHhccceEEEeecCC
Q 036401 1135 DSFYDKAEALVGVYRDSD 1152 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV~~~~~ 1152 (1154)
..++..||.++-+=.+.|
T Consensus 885 LdVIk~AD~IIDLGPeGG 902 (935)
T COG0178 885 LDVIKTADWIIDLGPEGG 902 (935)
T ss_pred cceEeecCEEEEcCCCCC
Confidence 999999999976655444
No 488
>PF13175 AAA_15: AAA ATPase domain
Probab=98.29 E-value=5.8e-07 Score=105.28 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=59.5
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCC--C----eEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeE
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPS--P----FFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQS 1128 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~--~----~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~ 1128 (1154)
-++..+|.|.+.++.|+++++.....-. + ++++|||.++|-|.....++++|.+++ ...+.||
T Consensus 337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~-----------~~~~~Qi 405 (415)
T PF13175_consen 337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLS-----------KNNNIQI 405 (415)
T ss_pred CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHh-----------ccCCCEE
Confidence 4678999999999999998866432111 2 999999999999999999999999993 1258899
Q ss_pred EEEEechhH
Q 036401 1129 IVISLKDSF 1137 (1154)
Q Consensus 1129 i~it~~~~~ 1137 (1154)
|++||-+.+
T Consensus 406 iitTHSp~i 414 (415)
T PF13175_consen 406 IITTHSPFI 414 (415)
T ss_pred EEECCChhh
Confidence 999998765
No 489
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=98.27 E-value=6.9e-07 Score=102.24 Aligned_cols=64 Identities=27% Similarity=0.488 Sum_probs=53.5
Q ss_pred CceeEEEEecceeccCceeecCCCCeEEEEcCCCCCHHHHHHHHHHHhCcccccccccccchhhhc
Q 036401 8 GKIHRLELENFKSYKGLQIIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGGQLKDLIYA 73 (1154)
Q Consensus 8 ~~i~~l~l~nFks~~~~~~i~~~~~~~~IvG~NGsGKS~ildAi~~~lg~~~~~~r~~~~~~~I~~ 73 (1154)
|+|.+|+|.||+||...+ +.+..|.|++||+|-||||+|||||+.+|+.. +..+.-.+.|+++.
T Consensus 1 M~L~~v~I~nFR~i~~ls-l~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~-~~~~~f~~~d~~~~ 64 (581)
T COG3593 1 MHLERVKIKNFRGINRLS-LEFEEGLNVLIGENNSGKSSLLDALRLLLDPE-SDLYSFTLDDFHFP 64 (581)
T ss_pred CcceeEEecccceeeeee-eeecCCceEEEcCCCcchHHHHHHHHHHcCCc-ccccceeeccCccC
Confidence 689999999999999876 55667799999999999999999999999886 33455556677664
No 490
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.27 E-value=0.014 Score=64.80 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 184 KGKAEEKSALVYQKKRTVVLERKQKKEQK 212 (1154)
Q Consensus 184 ~~~~~~~l~~~~~~~~~l~~ei~~lk~~~ 212 (1154)
+...+..+....++++.+..+-..|..+.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i 34 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEI 34 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44455555556666666665544444443
No 491
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.24 E-value=1.2e-06 Score=83.29 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=68.4
Q ss_pred CcccccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1052 KRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1052 ~~~~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
.+......||-||||.+-|+.+++-. |.+++||||.|||-..-.....++|+.+ + ..+-+++|
T Consensus 140 ~~~~~A~~LSHGqKQwLEIGMll~Q~----P~lLLlDEPvAGMTd~Et~~taeLl~~l------------a-~~hsilVV 202 (249)
T COG4674 140 ERDRLAALLSHGQKQWLEIGMLLAQD----PKLLLLDEPVAGMTDAETEKTAELLKSL------------A-GKHSILVV 202 (249)
T ss_pred hhhhhhhhhccchhhhhhhheeeccC----CcEEEecCccCCCcHHHHHHHHHHHHHH------------h-cCceEEEE
Confidence 34566789999999999999999987 9999999999999999999999999999 3 56779999
Q ss_pred EechhHHH-hccceE
Q 036401 1132 SLKDSFYD-KAEALV 1145 (1154)
Q Consensus 1132 t~~~~~~~-~~d~~~ 1145 (1154)
-|+..++. .|+++-
T Consensus 203 EHDM~Fvr~~A~~VT 217 (249)
T COG4674 203 EHDMGFVREIADKVT 217 (249)
T ss_pred eccHHHHHHhhheeE
Confidence 99999996 888763
No 492
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.24 E-value=5.4e-07 Score=92.32 Aligned_cols=68 Identities=28% Similarity=0.359 Sum_probs=46.7
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...||-|.-.+.+++ -++.+.+||||++||||...|=|.-...++.++.+. + +.+|+||+||-+.
T Consensus 268 ~~eLSDGTlRfl~l~--t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sA------------a-k~sQv~VsTHS~r 332 (373)
T COG4637 268 DRELSDGTLRFLALA--TLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSA------------A-KRSQVIVSTHSPR 332 (373)
T ss_pred hhhccccHHHHHHHH--HHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHh------------h-ccceEEEEeCCHH
Confidence 347777766654443 444566677777778887777777777777777776 2 5567777777766
Q ss_pred HHH
Q 036401 1137 FYD 1139 (1154)
Q Consensus 1137 ~~~ 1139 (1154)
++.
T Consensus 333 Ll~ 335 (373)
T COG4637 333 LLN 335 (373)
T ss_pred HHh
Confidence 654
No 493
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.21 E-value=0.021 Score=65.18 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 172 ELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQK 212 (1154)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~ 212 (1154)
.+......=+..+..+...|....+++|.|..+-..|..+.
T Consensus 32 ~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di 72 (546)
T KOG0977|consen 32 PIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDI 72 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455666666666666666666666544444433
No 494
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.17 E-value=0.029 Score=67.28 Aligned_cols=320 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 036401 158 KELTALLEQISGS-DELKREYEVLEDEKGKAEEKSALVYQKKRTVVLERKQKKEQKEEAERHLRLQDQ----LKSLKKEH 232 (1154)
Q Consensus 158 ~~~~~~~e~~~g~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ei~~lk~~~~~a~~~~~~~~e----l~~l~~~~ 232 (1154)
.+++..+.++-.+ ....+....+.+...+++..+.....-+..+.+....++.-.+....|+....- ++.+..+.
T Consensus 1422 ~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~v 1501 (1758)
T KOG0994|consen 1422 TQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEV 1501 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHhh
Q 036401 233 FLWQLFNIEKDITKASKDLEAEKRSREEVMRELEHFED---QKRGKRKELAKYLKEIAQCEKKIAERNNRLDKSQPELLK 309 (1154)
Q Consensus 233 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~ 309 (1154)
...++-.--.++..+..+|.+.-+.+..+..-+..... ..+.+..+.......-..++...+.....+.........
T Consensus 1502 L~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~ 1581 (1758)
T KOG0994|consen 1502 LALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGE 1581 (1758)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCCCchhhHHHHHHHHHHHhh
Q 036401 310 LNEEMSRINSKIKSSKKELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSRDGAGRLPLLDTQLTEYFQIKEEAGM 389 (1154)
Q Consensus 310 ~~~~i~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 389 (1154)
.+..|......+...+..+..+++.....+..+....+++.++...++.++.+... ....-....+.......
T Consensus 1582 a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q-------ns~~A~~a~~~a~sa~~ 1654 (1758)
T KOG0994|consen 1582 AQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ-------NSAEAKQAEKTAGSAKE 1654 (1758)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 036401 390 KTAKLRDEKEVLDREQHADLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILDASGGHKDELTKLKKELRSMQDKHR 469 (1154)
Q Consensus 390 ~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 469 (1154)
.....+..+..++.......+-+..-...-...+.+.+.+..+-..|-.+-......+.+++..+...+..+.....++.
T Consensus 1655 ~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~ 1734 (1758)
T KOG0994|consen 1655 QALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELA 1734 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHH
Q 036401 470 DSRQKYENLKSKIGE 484 (1154)
Q Consensus 470 ~l~~~~~~l~~~l~~ 484 (1154)
.|+.+++.....+..
T Consensus 1735 ~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1735 GLEKRVESVLDHINE 1749 (1758)
T ss_pred hHHHHHHHHHHHHhh
No 495
>PRK14079 recF recombination protein F; Provisional
Probab=98.15 E-value=5.7e-05 Score=84.36 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccCC--CCCC------------Ccccce
Q 036401 980 EKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLENE--DDPF------------LHGIKY 1045 (1154)
Q Consensus 980 ~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------~~~~~~ 1045 (1154)
...+...+..+-......-..++..++..+..+|..+.. +....+.+... .+.+ ..|.
T Consensus 170 l~~w~~~l~~~g~~i~~~R~~~~~~l~~~~~~~~~~l~~------~~~l~l~y~~~~~~~~~~~~l~~~~~~d~~~g~-- 241 (349)
T PRK14079 170 LHVWDDELVKLGDEIMALRRRALTRLSELAREAYAELGS------RKPLRLELSESTAPEGYLAALEARRAEELARGA-- 241 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CCcEEEEEecCcCHHHHHHHHHHhhHHHHHcCC--
Confidence 334555555555555566666777777888888877721 11222222111 0001 1111
Q ss_pred eecCCCC-------cccc-cccCchhhHHHHHHHHHHhh----c-ccCCCCeEEeeccccccchhhHHHHHHHHHhcccC
Q 036401 1046 TAMPPTK-------RFRD-MEQLSGGEKTVAALALLFSI----H-SYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCE 1112 (1154)
Q Consensus 1046 ~~~~~~~-------~~~~-~~~lSgGek~~~~la~~~a~----~-~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~ 1112 (1154)
+-.-|.+ ..++ -..+|+||+.+++||+.||- . ....+|+++||||++.||+..+..+.++|...
T Consensus 242 T~~GpHRdD~~~~~~g~~~~~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~--- 318 (349)
T PRK14079 242 TVVGPHRDDLVLTLEGRPAHRYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL--- 318 (349)
T ss_pred CCCCCchhceEEEECCEehHHhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---
Confidence 1111111 0123 34789999999999999982 1 12458999999999999999999999988754
Q ss_pred CCCCCCCCCCCCCeeEEEEEechhHHHhccceEEEe
Q 036401 1113 GTRGNQDADEGNGFQSIVISLKDSFYDKAEALVGVY 1148 (1154)
Q Consensus 1113 ~~~~~~~a~~~~~~q~i~it~~~~~~~~~d~~~GV~ 1148 (1154)
.|++++|- +....||..+.+.
T Consensus 319 -------------~q~~it~t--~~~~~~~~~~~~~ 339 (349)
T PRK14079 319 -------------PQAIVAGT--EAPPGAALTLRIE 339 (349)
T ss_pred -------------CcEEEEcC--CCCCCCceEEEEe
Confidence 25555433 3456788888773
No 496
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.14 E-value=5.9e-05 Score=82.58 Aligned_cols=153 Identities=20% Similarity=0.290 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEeccC
Q 036401 955 ALDQYEALLEKERTVTEEFEAARKEEKQAADAYNSVKQKRYGLFMEAFNHISSSIDRIYKQLTRSNTHPLGGTAYLNLEN 1034 (1154)
Q Consensus 955 a~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~f~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1154)
++..|..++.+.+.|.++....+++++.+...+.++. .|+-....+...|+.....- .|.+.+.+.-
T Consensus 443 e~~~Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie-----~~l~~~~~~vke~nq~l~~g--------~gra~~~L~~ 509 (758)
T COG4694 443 EYNKYCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIE-----KFLVSIKPIVKEINQTLLKG--------YGRANFSLAC 509 (758)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHH-----HHHhhchhhHHHHHHHHHhh--------cchheeeeee
Confidence 3445667777777777777777767666666666654 34433334444454433333 2344433322
Q ss_pred C-CCCCCcccceeecCCCCcccccccCchhhHHHHHHHHHHhhcccCCC----CeEEeeccccccchhhHHHHHHHHHhc
Q 036401 1035 E-DDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPS----PFFILDEVDAALDNLNVAKVAGFIRSK 1109 (1154)
Q Consensus 1035 ~-~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~la~~~a~~~~~p~----~~~~lDE~d~~lD~~~~~~~~~~l~~~ 1109 (1154)
. ++.+. ++... + .......||-|||+.+|+++.+|-..-+|- .++|+|.|-+.+|...+-+++.+++..
T Consensus 510 ~~kek~y-~i~r~-~----g~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~ 583 (758)
T COG4694 510 TEKEKFY-RIQRE-D----GQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEE 583 (758)
T ss_pred ccchhhh-eeecc-c----CccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHH
Confidence 1 11121 11111 1 112345699999999999988887655554 789999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCeeEEEEEechhHH
Q 036401 1110 SCEGTRGNQDADEGNGFQSIVISLKDSFY 1138 (1154)
Q Consensus 1110 ~~~~~~~~~~a~~~~~~q~i~it~~~~~~ 1138 (1154)
.....|+||.||+..++
T Consensus 584 ------------~t~~kQviVLtHntYF~ 600 (758)
T COG4694 584 ------------KTNIKQVIVLTHNTYFY 600 (758)
T ss_pred ------------HhCceEEEEEeccceeh
Confidence 45789999999996555
No 497
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.14 E-value=3.1e-06 Score=93.56 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=54.2
Q ss_pred cccccccCchhhHHHHHHHHHHhhcccCCC-CeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEE
Q 036401 1053 RFRDMEQLSGGEKTVAALALLFSIHSYKPS-PFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVI 1131 (1154)
Q Consensus 1053 ~~~~~~~lSgGek~~~~la~~~a~~~~~p~-~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~i 1131 (1154)
...++..+|.|+++++.|+..+... .+. +++++|||+++|.|.....++++|..+ ...+.|||++
T Consensus 230 ~~~~~~~~S~G~~~~l~l~~~l~~~--~~~~~illiDEpE~~LHp~~q~~l~~~l~~~------------~~~~~Qviit 295 (303)
T PF13304_consen 230 KEIPLSSLSSGEKRLLSLLSLLLSA--KKNGSILLIDEPENHLHPSWQRKLIELLKEL------------SKKNIQVIIT 295 (303)
T ss_dssp EEGGGS---HHHHHHHHHHHHHHTT--TTT-SEEEEESSSTTSSHHHHHHHHHHHHHT------------GGGSSEEEEE
T ss_pred eEEeeccCCHHHHHHHHHHHHHhCc--CCCCeEEEecCCcCCCCHHHHHHHHHHHHhh------------CccCCEEEEe
Confidence 4567889999999997555544433 333 999999999999999999999999988 3248999999
Q ss_pred EechhHH
Q 036401 1132 SLKDSFY 1138 (1154)
Q Consensus 1132 t~~~~~~ 1138 (1154)
||.+.++
T Consensus 296 THSp~il 302 (303)
T PF13304_consen 296 THSPFIL 302 (303)
T ss_dssp ES-GGG-
T ss_pred Cccchhc
Confidence 9998775
No 498
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.12 E-value=4.9e-06 Score=92.57 Aligned_cols=70 Identities=27% Similarity=0.329 Sum_probs=64.8
Q ss_pred cccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEechh
Q 036401 1057 MEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLKDS 1136 (1154)
Q Consensus 1057 ~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~~~ 1136 (1154)
...|||||+||.++|++|-+. |.|-||||-|+|+|..+-..+..+++++ +.+||-|+||..
T Consensus 568 ~dvLS~GEqQRLa~ARLfy~k----Pk~AiLDE~TSAv~~dvE~~~Yr~~r~~---------------giT~iSVgHRkS 628 (659)
T KOG0060|consen 568 MDVLSPGEQQRLAFARLFYHK----PKFAILDECTSAVTEDVEGALYRKCREM---------------GITFISVGHRKS 628 (659)
T ss_pred HhhcCHHHHHHHHHHHHHhcC----CceEEeechhhhccHHHHHHHHHHHHHc---------------CCeEEEeccHHH
Confidence 568999999999999999999 9999999999999999999999999988 678999999999
Q ss_pred HHHhccceE
Q 036401 1137 FYDKAEALV 1145 (1154)
Q Consensus 1137 ~~~~~d~~~ 1145 (1154)
+-.+=|.+.
T Consensus 629 L~kfHd~~L 637 (659)
T KOG0060|consen 629 LWKFHDYVL 637 (659)
T ss_pred HHhhhhEEE
Confidence 988877763
No 499
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.12 E-value=4.8e-06 Score=96.44 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=68.3
Q ss_pred cccccCchhhHHHHHHHHHHhhcccCCCCeEEeeccccccchhhHHHHHHHHHhcccCCCCCCCCCCCCCCeeEEEEEec
Q 036401 1055 RDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGTRGNQDADEGNGFQSIVISLK 1134 (1154)
Q Consensus 1055 ~~~~~lSgGek~~~~la~~~a~~~~~p~~~~~lDE~d~~lD~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~q~i~it~~ 1134 (1154)
+....|||||-||+-||--+.-.. --=+||||||..||=+.-..++...|+.| ...+.++|+|.|+
T Consensus 477 R~a~TLSGGEaQRIRLAtqiGS~L--tGVlYVLDEPSIGLHqrDn~rLi~tL~~L------------RDlGNTviVVEHD 542 (935)
T COG0178 477 RSAGTLSGGEAQRIRLATQIGSGL--TGVLYVLDEPSIGLHQRDNERLIETLKRL------------RDLGNTVIVVEHD 542 (935)
T ss_pred ccCCCcChhHHHHHHHHHHhcccc--eeeEEEecCCccCCChhhHHHHHHHHHHH------------HhcCCeEEEEecC
Confidence 567899999999999998885321 13689999999999999999999999999 3467789999999
Q ss_pred hhHHHhccceEEE
Q 036401 1135 DSFYDKAEALVGV 1147 (1154)
Q Consensus 1135 ~~~~~~~d~~~GV 1147 (1154)
+++|..||.++-|
T Consensus 543 edti~~AD~iIDi 555 (935)
T COG0178 543 EDTIRAADHIIDI 555 (935)
T ss_pred HHHHhhcCEEEee
Confidence 9999999999644
No 500
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.08 E-value=0.061 Score=64.69 Aligned_cols=348 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhcchhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------HHHH
Q 036401 158 KELTALLEQISGSDELKREYE---VLEDEKGKAEEKSALVYQKKRTVVLER-KQKKEQKEEAERHLR---------LQDQ 224 (1154)
Q Consensus 158 ~~~~~~~e~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~l~~ei-~~lk~~~~~a~~~~~---------~~~e 224 (1154)
+....-|++++....|.+..+ .+...+..+...+...|.-...+...+ .++..-..-...... ...+
T Consensus 178 e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~ 257 (569)
T PRK04778 178 EEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKE 257 (569)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 036401 225 LKSLKKEHFLWQLFNIEKDITKASKDLEAEKRSREEVMRELEHFEDQKRGKRKELAKYLKEIAQCEKKIAERNNRLDKSQ 304 (1154)
Q Consensus 225 l~~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~ 304 (1154)
+..+...+....-..-.-++......+..+..+++.+-..+..-.............+...+..+......+..++..+.
T Consensus 258 i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 258 IQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCCCch
Q 036401 305 PE----------LLKLNEEMSRINSKIKSSKKELERKREERRKHANDIKELQKGIQDLTGKLEELNEKSRDGAGRLPLLD 374 (1154)
Q Consensus 305 ~~----------~~~~~~~i~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ 374 (1154)
.. ...+..++..+...+......+.........+...+..+..++..+......+...
T Consensus 338 ~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~------------ 405 (569)
T PRK04778 338 QSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEM------------ 405 (569)
T ss_pred HccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036401 375 TQLTEYFQIKEEAGMKTAKLRDEKEVLDREQHA---------DLEVLKNLEANLQQLSNREHELDAQEDQMRKRQKNILD 445 (1154)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~---------~~~~~~~l~~~i~~~~~~~~~l~~~~~~l~~~~~~l~~ 445 (1154)
+..+......+...+..++..+..+.+.+.. ....+..+...+..+..++...-=.+..+...+.....
T Consensus 406 --l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~ 483 (569)
T PRK04778 406 --LQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATE 483 (569)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceec
Q 036401 446 ASGGHKDELTKLKKELRSMQDKHRDSRQKYENLKSKIGEIENQLRELKADRHENERDAKLSQAVETLKRLFQGVHGRM 523 (1154)
Q Consensus 446 ~l~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~gv~g~l 523 (1154)
.+..+..+...+......+..-++. -+........+...+..+....+......++......+...-||+.-++
T Consensus 484 ~~~~L~~q~~dL~~~a~~lE~~Iqy----~nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG~~~ri 557 (569)
T PRK04778 484 DVETLEEETEELVENATLTEQLIQY----ANRYRSDNEEVAEALNEAERLFREYDYKAALEIIATALEKVEPGVTKRI 557 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhccCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCcHHHHH
Done!